<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:32:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717545" ref_strand="+" ref_description="SGN-E717545 [FC02AC01]">
      <seq>gattggcggccaatcggccgaataaatctcctattcaactcccttttcatatcctctttctatgcaactaaccatggatagagaacaagaagagatgcaattcctaggcctctttgatatctacatagaagcctacaaagtcatctaccaatggaagaaaattttcagccaaatcaccctatctttgatccttcctatgtccttcatcttcttagctcacatggaagtttaccatcttttcttttctgaccttaaacactctgaatctcagctcagacatactcacacgggcacggcaaaatacaacaggatctctgatcacatagattcagagataacctctctatggcttttcataattgtctacttcactatcctcatcatcttctcccttctatctacctctgcagtggtttacacaattgcttctatatacacgtcacgtgaagtcggttacaagaaagttatgaatgttgttcctaaagtttggaagagagttatggtgactttcttgtgtgctttcctttgtttcttcatctacaaccttgtctccttctttctcttagctttatggtttgtatgggctttcagcatgcggggtgaaaatcatggtcttgctaactttatttttgtaatcatggcgattgtttatgttgttggatctgtgtacctttcggttatatggcacttagctactgtggtaactgtgttagaggattcatatggagtgaaagccatgatcaaaagcaaggatttgttaaaggggaagatgagaatagccttggttttctttttcaagttcaatctctcacttggtatcttgaactttgttttcaagaagtttgtggtgcatggaagccatcatatgcatctagggatgttgtatagagtaggggttgggttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118" g_stop="1001" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="906" r_length="884" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E717545" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118" e_stop="1001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTCCTATTCAACTCCATTTTCATATCCTCTTTCTATGCAACTAACCATGGATAGAGAACAAGAAGAGATGCAATTCCTAGGCCTCTTTGATATCTACATAGAAGCCTACAAAGTCATCTACCAATGGAAGAAAATTTTCAGCCAAATCACCCTATCTTTGATCCTTCCTATGTCCTTCATCTTCTTAGCTCACATGGAAGTTTACCATCTTTTCTTTTCTGACCTTAAACACTCTGAATCTCAGCTCAGACATACTCACACGGGCACGGCAAAATACAACAGGATCTCTGATCACATAGATTCAGAGATAACCTCTCTATGGCTTTTCATAATTGTCTACTTCACTATCCTCATCATCTTCTCCCTTCTATCTACCTCTGCAGTGGTTTACACAATTGCTTCTATATACACGTCACGTGAAGTCGGTTACAAGAAAGTTATGAATGTTGTTCCTAAAGTTTGGAAGAGAGTTATGGTGACTTTCTTGTGTGCTTTCCTTTGTTTCTTCATCTACAACCTTGTCTCCTTCTTTCTCTTAGCTTTATGGTTTGTATGGGCTTTCAGCATGCGGGGTGAAAATCATGGTCTTGCTAACTTTATTTTTGTAATCATGGCGATTGTTTATGTTGTTGGATCTGTGTACCTTTCGGTTATATGGCACTTAGCTACTGTGGTAACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGCAAGGATTTGTTAAAGGGGAAGATGAGAATAGCCTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTT</genome_strand>
        <mrna_strand>TAAATCTCCTATTCAACTCCCTTTTCATATCCTCTTTCTATGCAACTAACCATGGATAGAGAACAAGAAGAGATGCAATTCCTAGGCCTCTTTGATATCTACATAGAAGCCTACAAAGTCATCTACCAATGGAAGAAAATTTTCAGCCAAATCACCCTATCTTTGATCCTTCCTATGTCCTTCATCTTCTTAGCTCACATGGAAGTTTACCATCTTTTCTTTTCTGACCTTAAACACTCTGAATCTCAGCTCAGACATACTCACACGGGCACGGCAAAATACAACAGGATCTCTGATCACATAGATTCAGAGATAACCTCTCTATGGCTTTTCATAATTGTCTACTTCACTATCCTCATCATCTTCTCCCTTCTATCTACCTCTGCAGTGGTTTACACAATTGCTTCTATATACACGTCACGTGAAGTCGGTTACAAGAAAGTTATGAATGTTGTTCCTAAAGTTTGGAAGAGAGTTATGGTGACTTTCTTGTGTGCTTTCCTTTGTTTCTTCATCTACAACCTTGTCTCCTTCTTTCTCTTAGCTTTATGGTTTGTATGGGCTTTCAGCATGCGGGGTGAAAATCATGGTCTTGCTAACTTTATTTTTGTAATCATGGCGATTGTTTATGTTGTTGGATCTGTGTACCTTTCGGTTATATGGCACTTAGCTACTGTGGTAACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGCAAGGATTTGTTAAAGGGGAAGATGAGAATAGCCTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209050" ref_strand="+" ref_description="SGN-E209050 [cLEC-38-D10]">
      <seq>ttttcatatcctctttctatgcaactaaccatggatagagaacaagaagagatgcaattcctaggcctctttgatatctacatagaagcctacaaagtcatctaccaatggaagaaaattttcagccaaatcaccctatctttgatccttcctatgtccttcatcttcttagctcacatggaagtttaccatcttttcttttctgaccttaaacactctgaatctcagctcagacatactcacacgggcacggcaaaatacaacaggatctctgatcacatagattcagagataacctctctatggcttttcataattgtctacttcactatcctcatcatcttctcccttctatctacctctgcagtggtttacacaattgcttctatatacacgtcacgtgaagtcggttacaagaaagttatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139" g_stop="567" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E209050" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139" e_stop="567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATATCCTCTTTCTATGCAACTAACCATGGATAGAGAACAAGAAGAGATGCAATTCCTAGGCCTCTTTGATATCTACATAGAAGCCTACAAAGTCATCTACCAATGGAAGAAAATTTTCAGCCAAATCACCCTATCTTTGATCCTTCCTATGTCCTTCATCTTCTTAGCTCACATGGAAGTTTACCATCTTTTCTTTTCTGACCTTAAACACTCTGAATCTCAGCTCAGACATACTCACACGGGCACGGCAAAATACAACAGGATCTCTGATCACATAGATTCAGAGATAACCTCTCTATGGCTTTTCATAATTGTCTACTTCACTATCCTCATCATCTTCTCCCTTCTATCTACCTCTGCAGTGGTTTACACAATTGCTTCTATATACACGTCACGTGAAGTCGGTTACAAGAAAGTTATGAAT</genome_strand>
        <mrna_strand>TTTTCATATCCTCTTTCTATGCAACTAACCATGGATAGAGAACAAGAAGAGATGCAATTCCTAGGCCTCTTTGATATCTACATAGAAGCCTACAAAGTCATCTACCAATGGAAGAAAATTTTCAGCCAAATCACCCTATCTTTGATCCTTCCTATGTCCTTCATCTTCTTAGCTCACATGGAAGTTTACCATCTTTTCTTTTCTGACCTTAAACACTCTGAATCTCAGCTCAGACATACTCACACGGGCACGGCAAAATACAACAGGATCTCTGATCACATAGATTCAGAGATAACCTCTCTATGGCTTTTCATAATTGTCTACTTCACTATCCTCATCATCTTCTCCCTTCTATCTACCTCTGCAGTGGTTTACACAATTGCTTCTATATACACGTCACGTGAAGTCGGTTACAAGAAAGTTATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718548" ref_strand="+" ref_description="SGN-E718548 [FC05AA01]">
      <seq>ttcctaggcctctttgatatctacatagaagcctacaaagtcatctaccaatggaagaaaattttcggccaaatcaccctatctttgatccttcctatgtccttcatcttcttagctcacatggaagtttaccatcttttcttttctgaccttaaacactctgaatctcagctcagacatactcacacgggcacggcaaaatacaacaggatctctgatcacatagattcagagataacctctctatggcttttcataattgtctacttcactatcctcatcatcttctcccttctatctacctctgcagtggtttacacaattgcttctatatacacgtcacgtgaagtcggttacaagaaagttatgaatgttgttcctaaagtttggaagagagttatggtgactttcttgtgtgctttcctttgtttcttcatctacaaccttgtctccttctttctcttagctttatggtttgtatgggctttcagcatgcggggtgaaaatcatggtcttgctaactttatttttgtaatcatggcgattgtttatgttgtaggatctgtgtacctttcggttatatggcacttagctactgtggtaactgtgttagaggattcatatggagtgaaagccatgatcaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="196" g_stop="843" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E718548" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="196" e_stop="843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTAGGCCTCTTTGATATCTACATAGAAGCCTACAAAGTCATCTACCAATGGAAGAAAATTTTCAGCCAAATCACCCTATCTTTGATCCTTCCTATGTCCTTCATCTTCTTAGCTCACATGGAAGTTTACCATCTTTTCTTTTCTGACCTTAAACACTCTGAATCTCAGCTCAGACATACTCACACGGGCACGGCAAAATACAACAGGATCTCTGATCACATAGATTCAGAGATAACCTCTCTATGGCTTTTCATAATTGTCTACTTCACTATCCTCATCATCTTCTCCCTTCTATCTACCTCTGCAGTGGTTTACACAATTGCTTCTATATACACGTCACGTGAAGTCGGTTACAAGAAAGTTATGAATGTTGTTCCTAAAGTTTGGAAGAGAGTTATGGTGACTTTCTTGTGTGCTTTCCTTTGTTTCTTCATCTACAACCTTGTCTCCTTCTTTCTCTTAGCTTTATGGTTTGTATGGGCTTTCAGCATGCGGGGTGAAAATCATGGTCTTGCTAACTTTATTTTTGTAATCATGGCGATTGTTTATGTTGTTGGATCTGTGTACCTTTCGGTTATATGGCACTTAGCTACTGTGGTAACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGC</genome_strand>
        <mrna_strand>TTCCTAGGCCTCTTTGATATCTACATAGAAGCCTACAAAGTCATCTACCAATGGAAGAAAATTTTCGGCCAAATCACCCTATCTTTGATCCTTCCTATGTCCTTCATCTTCTTAGCTCACATGGAAGTTTACCATCTTTTCTTTTCTGACCTTAAACACTCTGAATCTCAGCTCAGACATACTCACACGGGCACGGCAAAATACAACAGGATCTCTGATCACATAGATTCAGAGATAACCTCTCTATGGCTTTTCATAATTGTCTACTTCACTATCCTCATCATCTTCTCCCTTCTATCTACCTCTGCAGTGGTTTACACAATTGCTTCTATATACACGTCACGTGAAGTCGGTTACAAGAAAGTTATGAATGTTGTTCCTAAAGTTTGGAAGAGAGTTATGGTGACTTTCTTGTGTGCTTTCCTTTGTTTCTTCATCTACAACCTTGTCTCCTTCTTTCTCTTAGCTTTATGGTTTGTATGGGCTTTCAGCATGCGGGGTGAAAATCATGGTCTTGCTAACTTTATTTTTGTAATCATGGCGATTGTTTATGTTGTAGGATCTGTGTACCTTTCGGTTATATGGCACTTAGCTACTGTGGTAACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433200" ref_strand="+" ref_description="SGN-E433200 [STM-58-K11]">
      <seq>ctacatagaagcctacaaagtcatcaaccaatggaagaaaattttcagccaaatcaccctatctttgatccttcctatgtccttcatcttcttagctcacatggaagtttaccatcttttcttctctgaccttaaacactctgaatctcagctcagacatactcacacgggcacggcaaaatacaacaagatctctgatcacatagattcagagctaacctctctatggctttttataattgtctacttcactatcctcatcatcttctcccttctttccacctctgctgtggtttacacaattgcttccatatacacgtcacgtgaaatcggttacaagaaagttatgagtgttgttcctaaagtttggaagagggttatggtgactttcttgtgtgctttcctttgtttcttcatctataaccttgtttccttctttctcttagctttatggtttgtatgggctttcagcatgcggggtgaaaatgatggtcttgctaaccttatttttgtgatcatggcgattgtttatgttgttggatctgtgtacctttcggttatatggcacttagctagtgtggtaactgtgttagaggattcatatggagtgaaagccatgatcaaaagcaaggatttgttaaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="1161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="216" g_stop="861" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E433200" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="216" e_stop="861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATAGAAGCCTACAAAGTCATCTACCAATGGAAGAAAATTTTCAGCCAAATCACCCTATCTTTGATCCTTCCTATGTCCTTCATCTTCTTAGCTCACATGGAAGTTTACCATCTTTTCTTTTCTGACCTTAAACACTCTGAATCTCAGCTCAGACATACTCACACGGGCACGGCAAAATACAACAGGATCTCTGATCACATAGATTCAGAGATAACCTCTCTATGGCTTTTCATAATTGTCTACTTCACTATCCTCATCATCTTCTCCCTTCTATCTACCTCTGCAGTGGTTTACACAATTGCTTCTATATACACGTCACGTGAAGTCGGTTACAAGAAAGTTATGAATGTTGTTCCTAAAGTTTGGAAGAGAGTTATGGTGACTTTCTTGTGTGCTTTCCTTTGTTTCTTCATCTACAACCTTGTCTCCTTCTTTCTCTTAGCTTTATGGTTTGTATGGGCTTTCAGCATGCGGGGTGAAAATCATGGTCTTGCTAACTTTATTTTTGTAATCATGGCGATTGTTTATGTTGTTGGATCTGTGTACCTTTCGGTTATATGGCACTTAGCTACTGTGGTAACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGCAAGGATTTGTTAAAGGGG</genome_strand>
        <mrna_strand>CTACATAGAAGCCTACAAAGTCATCAACCAATGGAAGAAAATTTTCAGCCAAATCACCCTATCTTTGATCCTTCCTATGTCCTTCATCTTCTTAGCTCACATGGAAGTTTACCATCTTTTCTTCTCTGACCTTAAACACTCTGAATCTCAGCTCAGACATACTCACACGGGCACGGCAAAATACAACAAGATCTCTGATCACATAGATTCAGAGCTAACCTCTCTATGGCTTTTTATAATTGTCTACTTCACTATCCTCATCATCTTCTCCCTTCTTTCCACCTCTGCTGTGGTTTACACAATTGCTTCCATATACACGTCACGTGAAATCGGTTACAAGAAAGTTATGAGTGTTGTTCCTAAAGTTTGGAAGAGGGTTATGGTGACTTTCTTGTGTGCTTTCCTTTGTTTCTTCATCTATAACCTTGTTTCCTTCTTTCTCTTAGCTTTATGGTTTGTATGGGCTTTCAGCATGCGGGGTGAAAATGATGGTCTTGCTAACCTTATTTTTGTGATCATGGCGATTGTTTATGTTGTTGGATCTGTGTACCTTTCGGTTATATGGCACTTAGCTAGTGTGGTAACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGCAAGGATTTGTTAAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433199" ref_strand="+" ref_description="SGN-E433199 [STM-58-K11]">
      <seq>ttccatactctcccaaataaacttcaagatgatctgaaagtgcagacttgtcaatgttctcatggtgataggacttgcaaacaaagtaaataattgtttgaatcaccaaaccaaatagcatcaaagtaaacaataaaagaagacaaaacaacccaacacctactctatacaacatccctagatgcatatgatggcttccatgtaccacaaacttcttgaaaacaaagttcaagataccaaataagagattgaacttgaaaaagaaaaacagggctattctcatcttcccctttaacaaatccttgcttttgatcatggctttcactccatatgaatcctctaacacagttaccacactagctaagtgccatataaccgaaaggtacacagatccaacaacataaacaatcgccatgatcacaaaaataaggttagcaagaccatcattttcaccccgcatgctgaaagcccatacaaaccataaagctaagagaaagaaggaaacaaggttatagatgaagaaacaaaggaaagcacacaagaaagtcaccataaccctcttccaaactttaggaacaacactcataactttcttgtaaccgatttcacgtgacgtgtatatggaagcaattgtgtaaaccacagcagaggtggaaagaagggagaagatgatgaggatagtgaagtagacnattataaaaagccatagagaggttagctctgaatctatgtgatcagagatcttgttgtattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="1444" stop="91"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1147" g_stop="391" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E433199" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1147" e_stop="391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATACTCTCCCAAATAAACTTCAAGATGATCAGAAAGTGCAGACTTGTCAATGTTCTCATGGTGATAGGACTTACAAACAAAGTAAATAATTGTTTGAATCACCAAACCAAAGAGTATCAAAGCAAACAATAACAGAAGACAAAACAACCCAACCCCTACTCTATACAACATCCCTAGATGCATATGATGGCTTCCATGCACCACAAACTTCTTGAAAACAAAGTTCAAGATACCAAGTGAGAGATTGAACTTGAAAAAGAAAACCAAGGCTATTCTCATCTTCCCCTTTAACAAATCCTTGCTTTTGATCATGGCTTTCACTCCATATGAATCCTCTAACACAGTTACCACAGTAGCTAAGTGCCATATAACCGAAAGGTACACAGATCCAACAACATAAACAATCGCCATGATTACAAAAATAAAGTTAGCAAGACCATGATTTTCACCCCGCATGCTGAAAGCCCATACAAACCATAAAGCTAAGAGAAAGAAGGAGACAAGGTTGTAGATGAAGAAACAAAGGAAAGCACACAAGAAAGTCACCATAACTCTCTTCCAAACTTTAGGAACAACATTCATAACTTTCTTGTAACCGACTTCACGTGACGTGTATATAGAAGCAATTGTGTAAACCACTGCAGAGGTAGATAGAAGGGAGAAGATGATGAGGATAGTGAAGTAGACAATTATGAAAAGCCATAGAGAGGTTATCTCTGAATCTATGTGATCAGAGATCCTGTTGTATTTTGC</genome_strand>
        <mrna_strand>TTCCATACTCTCCCAAATAAACTTCAAGATGATCTGAAAGTGCAGACTTGTCAATGTTCTCATGGTGATAGGACTTGCAAACAAAGTAAATAATTGTTTGAATCACCAAACCAAATAGCATCAAAGTAAACAATAAAAGAAGACAAAACAACCCAACACCTACTCTATACAACATCCCTAGATGCATATGATGGCTTCCATGTACCACAAACTTCTTGAAAACAAAGTTCAAGATACCAAATAAGAGATTGAACTTGAAAAAGAAAAACAGGGCTATTCTCATCTTCCCCTTTAACAAATCCTTGCTTTTGATCATGGCTTTCACTCCATATGAATCCTCTAACACAGTTACCACACTAGCTAAGTGCCATATAACCGAAAGGTACACAGATCCAACAACATAAACAATCGCCATGATCACAAAAATAAGGTTAGCAAGACCATCATTTTCACCCCGCATGCTGAAAGCCCATACAAACCATAAAGCTAAGAGAAAGAAGGAAACAAGGTTATAGATGAAGAAACAAAGGAAAGCACACAAGAAAGTCACCATAACCCTCTTCCAAACTTTAGGAACAACACTCATAACTTTCTTGTAACCGATTTCACGTGACGTGTATATGGAAGCAATTGTGTAAACCACAGCAGAGGTGGAAAGAAGGGAGAAGATGATGAGGATAGTGAAGTAGACNATTATAAAAAGCCATAGAGAGGTTAGCTCTGAATCTATGTGATCAGAGATCTTGTTGTATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403073" ref_strand="+" ref_description="SGN-E403073 [PPC-9-F15]">
      <seq>gttcatactctcccaaataaacttcaagatgatctgaaagtgcagacttgtcaatgttctcatggtgataggacttgcaaacaaagtaaataattgtttgaatcaccaaaccaaatagcatcaaagtaaacaataaaagaagacaaaacaacccaacacctactctatacaacatccctagatgcatatgatggcttccatgtaccacaaacttcttgaaaacaaagttcaagataccaaataagagattgaacttgaaaaagaaaaacagggctattctcatcttcccctttaacaaatccttgcttttgatcatggctttcactccatatgaatcctctaacacagttaccacactagctaagtgccatataaccgaaaggtacacagatccaacaacataaacaatcgccatgatcacaaaaataaggttagcaagaccatcattttcaccccgcatgctgaaagcccatacaaaccataaagctaagagaaagaaggaaacaaggttatagatgaagaaacaaaggaaagcacaccagaaagtcaccataaccctcttcccaactttaggaacaacactcataactttcttgtaaccgatttcacgtgacgtgtatatggaagcaattgtgtaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="1447" stop="208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1147" g_stop="508" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E403073" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1147" e_stop="508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATACTCTCCCAAATAAACTTCAAGATGATCAGAAAGTGCAGACTTGTCAATGTTCTCATGGTGATAGGACTTACAAACAAAGTAAATAATTGTTTGAATCACCAAACCAAAGAGTATCAAAGCAAACAATAACAGAAGACAAAACAACCCAACCCCTACTCTATACAACATCCCTAGATGCATATGATGGCTTCCATGCACCACAAACTTCTTGAAAACAAAGTTCAAGATACCAAGTGAGAGATTGAACTTGAAAAAGAAAACCAAGGCTATTCTCATCTTCCCCTTTAACAAATCCTTGCTTTTGATCATGGCTTTCACTCCATATGAATCCTCTAACACAGTTACCACAGTAGCTAAGTGCCATATAACCGAAAGGTACACAGATCCAACAACATAAACAATCGCCATGATTACAAAAATAAAGTTAGCAAGACCATGATTTTCACCCCGCATGCTGAAAGCCCATACAAACCATAAAGCTAAGAGAAAGAAGGAGACAAGGTTGTAGATGAAGAAACAAAGGAAAGCACACAAGAAAGTCACCATAACTCTCTTCCAAACTTTAGGAACAACATTCATAACTTTCTTGTAACCGACTTCACGTGACGTGTATATAGAAGCAATTGTGTAAAC</genome_strand>
        <mrna_strand>GTTCATACTCTCCCAAATAAACTTCAAGATGATCTGAAAGTGCAGACTTGTCAATGTTCTCATGGTGATAGGACTTGCAAACAAAGTAAATAATTGTTTGAATCACCAAACCAAATAGCATCAAAGTAAACAATAAAAGAAGACAAAACAACCCAACACCTACTCTATACAACATCCCTAGATGCATATGATGGCTTCCATGTACCACAAACTTCTTGAAAACAAAGTTCAAGATACCAAATAAGAGATTGAACTTGAAAAAGAAAAACAGGGCTATTCTCATCTTCCCCTTTAACAAATCCTTGCTTTTGATCATGGCTTTCACTCCATATGAATCCTCTAACACAGTTACCACACTAGCTAAGTGCCATATAACCGAAAGGTACACAGATCCAACAACATAAACAATCGCCATGATCACAAAAATAAGGTTAGCAAGACCATCATTTTCACCCCGCATGCTGAAAGCCCATACAAACCATAAAGCTAAGAGAAAGAAGGAAACAAGGTTATAGATGAAGAAACAAAGGAAAGCACACCAGAAAGTCACCATAACCCTCTTCCCAACTTTAGGAACAACACTCATAACTTTCTTGTAACCGATTTCACGTGACGTGTATATGGAAGCAATTGTGTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548402" ref_strand="+" ref_description="SGN-E548402 [TUS-60-N23]">
      <seq>ggctttcagcatgcggggtgaaaatcatggtcttgctaactttatttttgtaatcatggcgattgtttatgttgttggatctgtgtacctttcggttatatggcacttagctactgtggtaactgtgttagaggattcatatggagtgaaagccatgatcaaaagcaaggatttgttaaaggggaagatgagaatagccttggttttctttttcaagttcaatctctcacttggtatcttgaactttgttttcaagaagtttgtggtgcatggaagccatcatatgcatctagggatgttgtatagagtaggggnttgggttgttttgtcttcttttattgtttactttgatactctttggtttggtgattcaaacaattatttactttgtttgtaagtcctatcaccatgagaacattgacaagtctgcactttctgatcatcttgaagtttatttgggagagtatgaacctttgaagtctcaagatgtgcaaatggagagttatcaagtttaaaatattttacttgtatcttctgtgggtgaaacaattctctatgtatttgactttgtcaatggatgatatttatgagaattattatgatagaaaagatttaatatcttcaaacacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="378" stop="1600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="678" g_stop="1291" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E548402" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="678" e_stop="1291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTCAGCATGCGGGGTGAAAATCATGGTCTTGCTAACTTTATTTTTGTAATCATGGCGATTGTTTATGTTGTTGGATCTGTGTACCTTTCGGTTATATGGCACTTAGCTACTGTGGTAACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGCAAGGATTTGTTAAAGGGGAAGATGAGAATAGCCTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGG-TTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</genome_strand>
        <mrna_strand>GGCTTTCAGCATGCGGGGTGAAAATCATGGTCTTGCTAACTTTATTTTTGTAATCATGGCGATTGTTTATGTTGTTGGATCTGTGTACCTTTCGGTTATATGGCACTTAGCTACTGTGGTAACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGCAAGGATTTGTTAAAGGGGAAGATGAGAATAGCCTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGNTTGGGTTGTTTTGTCTTCTTTTATTGTTTACTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAACCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAATATTTTACTTGTATCTTCTGTGGGTGAAACAATTCTCTATGTATTTGACTTTGTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540540" ref_strand="+" ref_description="SGN-E540540 [TUS-60-N23](-)">
      <seq>ggctttcagcatgcggggtgaaaatcatggtcttgctaactttatttttgtaatcatggcgattgtttatgttgttggatctgtgtacctttcggttatatggcacttagctactgtggtaactgtgttagaggattcatatggagtgaaagccatgatcaaaagcaaggatttgttaaaggggaagatgagaatagccttggttttctttttcaagttcaatctctcacttggtatcttgaactttgttttcaagaagtttgtggtgcatggaagccatcatatgcatctagggatgttgtatagagtaggggttgggttgttttgtcttcttttattgtttactttgatactctttggtttggtgattcaaacaattatttactttgtttgtaagtcctatcaccatgagaacattgacaagtctgcactttctgatcatcttgaagtttatttgggagagtatgaacctttgaagtctcaagatgtgcaaatggagagttatcaagtttaaaatattttacttgtatcttctgtgggtgaaacaattctctatgtatttgactttttcaatggatgatatttatgagaattattatgatagaaaagatttaatatcttaaaaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="378" stop="1600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="678" g_stop="1291" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="640"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E540540" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="678" e_stop="1291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTCAGCATGCGGGGTGAAAATCATGGTCTTGCTAACTTTATTTTTGTAATCATGGCGATTGTTTATGTTGTTGGATCTGTGTACCTTTCGGTTATATGGCACTTAGCTACTGTGGTAACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGCAAGGATTTGTTAAAGGGGAAGATGAGAATAGCCTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</genome_strand>
        <mrna_strand>GGCTTTCAGCATGCGGGGTGAAAATCATGGTCTTGCTAACTTTATTTTTGTAATCATGGCGATTGTTTATGTTGTTGGATCTGTGTACCTTTCGGTTATATGGCACTTAGCTACTGTGGTAACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGCAAGGATTTGTTAAAGGGGAAGATGAGAATAGCCTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTTTTATTGTTTACTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAACCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAATATTTTACTTGTATCTTCTGTGGGTGAAACAATTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291381" ref_strand="+" ref_description="SGN-E291381 [cLET-2-B6]">
      <seq>gctttcagcatgcggggcgaaaatcatggtcttgctaactttatttttgtaatcatggccattgtttatgctgttggatctgtgtacctttccgttatatggcacttagctactgtggtcactgtgttagaggattcatatggagtgaaagccatgatcaaaagcaaggatctgataaaggggaagatgagaatagccttgggtttctttttcaagttcaatctctcacttggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="379" stop="1215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="679" g_stop="915" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E291381" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="679" e_stop="915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCAGCATGCGGGGTGAAAATCATGGTCTTGCTAACTTTATTTTTGTAATCATGGCGATTGTTTATGTTGTTGGATCTGTGTACCTTTCGGTTATATGGCACTTAGCTACTGTGGTAACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGCAAGGATTTGTTAAAGGGGAAGATGAGAATAGCCTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATC</genome_strand>
        <mrna_strand>GCTTTCAGCATGCGGGGCGAAAATCATGGTCTTGCTAACTTTATTTTTGTAATCATGGCCATTGTTTATGCTGTTGGATCTGTGTACCTTTCCGTTATATGGCACTTAGCTACTGTGGTCACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGCAAGGATCTGATAAAGGGGAAGATGAGAATAGCCTTGGGTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540264" ref_strand="+" ref_description="SGN-E540264 [TUS-60-H5]">
      <seq>cttggttttctttttcagttcaatctctcacttggtatcttgaactttgttttcaagaagtttgtggtgcatggaagccatcatatgcatctagggatgttgtatagagtaggggttgggttgttttgtcttctgttattgtttgctttgatactctttggtttggtgattcaaacaattatttactttgtttgtaagtcctatcaccatgagaacattgacaagtctgcactttctgatcatcttgaagtttatttgggagagtatgagcctttgaagtctcaagatgtgcaaatggagagttatcaagtttaaaaaattttacttgtatcttctgtgggtgaaacatttctctatgtatttgactttttcaatggatgatatttatgagaattattatgatagaaaagatttaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="576" stop="1594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="876" g_stop="1291" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="427"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E540264" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="876" e_stop="1291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</genome_strand>
        <mrna_strand>CTTGGTTTTCTTTTTC-AGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540177" ref_strand="+" ref_description="SGN-E540177 [TUS-60-F4](-)">
      <seq>cttggttttctttttcaagttcaatctctcacttggtatcttgaactttgttttcaagaagtttgtggtgcatggaagccatcatatgcatctagggatgttgtatagagtaggggttgggttgttttgtcttctgttattgtttgctttgatactctttggtttggtgattcaaacaattatttactttgtttgtaagtcctatcaccatgagaacattgacaagtctgcactttctgatcatcttgaagtttatttgggagagtatgagcctttgaagtctcaagatgtgcaaatggagagttatcaagtttaaaaaattttacttgtatcttctgtgggtgaaacatttctctatgtatttgactttttcaatggatgatatttatgagaattattatgatagaaaagatttaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="576" stop="1594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="876" g_stop="1291" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="428"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E540177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="876" e_stop="1291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</genome_strand>
        <mrna_strand>CTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540262" ref_strand="+" ref_description="SGN-E540262 [TUS-60-H5](-)">
      <seq>cttggttttctttttcaagttcaatctctcacttggtatcttgaactttgttttcaagaagtttgtggtgcatggaagccatcatatgcatctagggatgttgtatagagtaggggttgggttgttttgtcttctgttattgtttgctttgatactctttggtttggtgattcaaacaattatttactttgtttgtaagtcctatcaccatgagaacattgacaagtctgcactttctgatcatcttgaagtttatttgggagagtatgagcctttgaagtctcaagatgtgcaaatggagagttatcaagtttaaaaaattttacttgtatcttctgtgggtgaaacatttctctatgtatttgactttttcaatggatgatatttatgagaattattatgatagaaaagatttaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="576" stop="1594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="876" g_stop="1291" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="428"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E540262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="876" e_stop="1291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</genome_strand>
        <mrna_strand>CTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540491" ref_strand="+" ref_description="SGN-E540491 [TUS-60-M17]">
      <seq>cttggttttctttttcaagttcaatctctcacttggtatcttgaactttgttttcaagaagtttgtggtgcatggaagccatcatatgcatctagggatgttgtatagagtaggggttgggttgttttgtcttctgttattgtttgctttgatactctttggtttggtgattcaaacaattatttactttgtttgtaagtcctatcaccatgagaacattgacaagtctgcactttctgatcatcttgaagtttatttgggagagtatgagcctttgaagtctcaagatgtgcaaatggagagttatcaagtttaaaaaattttacttgtatcttctgtgggtgaaacatttctctatgtatttgactttttcaatggatgatatttatgagaattattatgatagaaaagatttaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="576" stop="1594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="876" g_stop="1291" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="428"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E540491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="876" e_stop="1291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</genome_strand>
        <mrna_strand>CTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543600" ref_strand="+" ref_description="SGN-E543600 [TUS-65-I1](-)">
      <seq>cttggttttctttttcaagttcaatctctcacttggtatcttgaactttgttttcaagaagtttgtggtgcatggaagccatcatatgcatctagggatgttgtatagagtaggggttgggttgttttgtcttctgttattgtttgctttgatactctttggtttggtgattcaaacaattatttactttgtttgtaagtcctatcaccatgagaacattgacaagtctgcactttctgatcatcttgaagtttatttgggagagtatgagcctttgaagtctcaagatgtgcaaatggagagttatcaagtttaaaaaattttacttgtatcttctgtgggtgaaacatttctctatgtatttgactttttcaatggatgatatttatgagaattattatgatagaaaagatttaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="576" stop="1594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="876" g_stop="1291" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="428"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E543600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="876" e_stop="1291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</genome_strand>
        <mrna_strand>CTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548393" ref_strand="+" ref_description="SGN-E548393 [TUS-60-M17](-)">
      <seq>cttggttttctttttcaagttcaatctctcacttggtatcttgaactttgttttcaagaagtttgtggtgcatggaagccatcatatgcatctagggatgttgtatagagtaggggttgggttgttttgtcttctgttattgtttgctttgatactctttggtttggtgattcaaacaattatttactttgtttgtaagtcctatcaccatgagaacattgacaagtctgcactttctgatcatcttgaagtttatttgggagagtatgagcctttgaagtctcaagatgtgcaaatggagagttatcaagtttaaaaaattttacttgtatcttctgtgggtgaaacatttctctatgtatttgactttttcaatggatgatatttatgagaattattatgatagaaaagatttaataaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="576" stop="1594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="876" g_stop="1291" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="436"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E548393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="876" e_stop="1291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</genome_strand>
        <mrna_strand>CTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540180" ref_strand="+" ref_description="SGN-E540180 [TUS-60-F4]">
      <seq>cttggttttctttttcagttcaatctctcacttggtatcttgaactttgttttcaagaagtttgtggtgcatggaagccatcatatgcatctagggatgttgtatagagtaggggttgggttgttttgtcttctgttattgtttgctttgatactctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="576" stop="1336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="876" g_stop="1036" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E540180" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="876" e_stop="1036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTG</genome_strand>
        <mrna_strand>CTTGGTTTTCTTTTTC-AGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286522" ref_strand="+" ref_description="SGN-E286522 [cLES-12-H5]">
      <seq>ttggttttctttttcaagttcaatctctcacttggtatcttgaactttgttttcaagaagtttgtggtgcatggaagccatcatatgcatctagggatgttgtatagagtaggggttgggttgttttgtcttctgttattgtttgctttgatactctttggtttggtgattcaaacaattatttactttgtttgtaagtcctatcaccatgagaacattgacaagtctgcactttctgatcatcttgaagtttatttgggagagtatgagcctttgaagtctcaagatgtgcaaatggagagttatcaagtttaaaaaattttacttgtatcttctgtgggtgaaacatttctctatgtatttgactttttcaatggatgatatttatgagaattattatgatagaaaagatttaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="577" stop="1594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="877" g_stop="1291" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="427"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E286522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="877" e_stop="1291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</genome_strand>
        <mrna_strand>TTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409589" ref_strand="+" ref_description="SGN-E409589 [PPI-14-B21]">
      <seq>cttcagcccattctccccgtatctttctccggcgagtctccgagcaatcagttcctccggcggaaatctagcggtagacaaatatgagtataaaaccaacagttgctttgagagccattattgtcggaggaatagctgcctttgcaaaaattggtggtgctgttaaagctgcaggaggagtaaaattaggtgcagctgctgctgccatgactgctgcagcaacagcagctgtatcaggatccaaacaggaagaaaagaaggatggttctcagcagttgtcatccaagtgatgcacacaactcatgtgttatttttttcttcagtgtaacgtataaactgttaaaataaaagttgttgggtggtggaatatgccagtcaaatggtttcccaggatgatctttaatagctaagatatatgggtccttacaactgcgggactcgttagttctgtactaatggaagtaggagtttgttgaagtgaaaaagcatcactcagtgcctgtgctagatgcagtttgtttaccctccggtacctgaggtatgtaattgtttttgtaccagtaaaggatatattactgcttccgtgatactttcnaaagcaaaatatatgtttattgtaaggttttaaaacatgagatctgtncataaaaccagatggaacttctggttcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="8507" stop="1456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8207" g_stop="8135" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8134" i_stop="2347" i_length="5788">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.648" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2346" g_stop="1756" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="675" r_length="602" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E409589" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8207" e_stop="8135"/>
          <exon e_start="2346" e_stop="1756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGCCCATTCTTCCCGTATCTTTCTCCGGTGAGTCTCCGAGCAATCAGTTCCTCCGGCTGAAATCTAGCGGTAAGTAATACTCTCGCGGTTTCTGCCTTTTGATTTTCATAACTATAATTTTATCTGTAATATGAGAATCCCCAATATGGGTTTGGTAGCATTGATATTTTCTGGTCTCCCACTGCCAAAATGAAGCCTCAAATCTTTTGTAAGATAATTTGCAGTCTTTTGCTTACACGAAATTGTTCAGTTTTTGGTCGTATTTGTCTTGCAACCCATGATAGTTTTGACAAATATCCTCAGCAGGTCCATGTATATGAAAGTTAGGAGATTCAAGCTGTGGAGGCAATGTCTGGTTTTTTGTTTTGGGGGTGGGGGGGATTACTAGATGTTGATTCCAATATCATGGCCTCATGGGGCAAGACAAGTTTTCTTTAGAATAGTTTTATGTGTGGGCAATCGAAGGACTTTGATGTAGTACTCACTGCTCATAATGTGTCAGCAACATAACTCAAGAAGTTTGTTAAGTTGCAAATTTGGGTTGGTTTACTATACAATCTGGAATTGGAAGCTAACTAAGCTTGAGAAATTACAGCAAAACACGAAAGAAGAAATAAGAGGGTCTAAGAACTACCCTAAAAACTAGGGCTAATTCATTCTCAAAATATAAGCAAGTCCTTTCAGGGGGAAGTTATTTATAGGCTTAATACAAAGGGAAGTAGGATGGGAATGAGCAAACATGCTTCTCTAAAACAAGCCATAAGTGCCCAATGCTAACTTGAGCCTCCTTAATTCCTTGCCAGTTGCTTTAAGAGGCTTAAGAAATTCATATCGTATCAAATCTCCCTCCTTCAACTCACCCTTGTCCTCAAAAGTGTGCATTGTAATAAGCAAAGAACTCATGTGTAGATTCACCGTTTGTAAACATTTTTGAGTGTTATCAAAAGAATAAAGCTCCAAAAAGCATTAAAATGCTACTCTAGTTCTGCTGGCTTTATTTTTCAAGAGCTTTTGCAGCACCTGAAACAACTGCAACTCCTCCCATGTCAAACTTAATTAGCTTTATCAAGCACCAGGTTCAGTGTTGATGTTGTACCACCACAGTCAAAAGTCAATTTCGTTCCAACCAAGGGTAACAACTTCTTTGTGACTTCTGCACTAGTAGGCTTATAAGATACAAACAACAACATACCCAATGAAATTCCACAAATGGGGTCTGAGAAGGGTGGTGTGTAACGGAACCTTACTCTTACCTCATGAAGGTATATAGGTTGATTCCGATAGACTCTCGGCTTAAGTAAAGCATAACAAAACAAGAAGAAAATATAATACTATTAGCAAATGACACGATAATTGAAGCATAGAAAACATGTAATAATAAAATCGAAAAGTATAAGAAAGTAGGAGAAGCGGAAATACTATTACCACTGATGAGGGAAACTAGATTGACTACCTACTAATCTTTCTATCCTTATCCTTTGACATCCATATCCTCTTATCTAGGGTCATGTCCTCGATAAACTGCAAGTGTTTCAAATCCTGTCCAATCACCTCCCCTCTCCCCAGTACTTCTTTGGCCTACCTTTACCCTTTCTTGGACCCACTATAGCCAACCTCTTATATCTCCTCACTGGGCATATGGACATCTCGTCTTCACATGTCCGAACCATCAATGTTTCACTTGCCTCCTACTTTTCCCAAATATCTTCGTTCCTAATCATATCTCGTCTAGTATGCCCACACTCTCAACATCCTTATTTATGCTAATTTCATCTTGACGTGCGAGTTCTTGAACGACCAACACGTGGTCCCTTACAAAGTAGCTGGTCGAATAACCACTTTATGAAACTTATCTTTAAGACTTGGGTGGCACATTCTAATCACATAAGACACTGTATGTGAGCCTCTATTTCCTCCACCTCACTTCAATACGATGTATTACATCCTTGTCGACCTCACTATATCCTTGGCTTAAAGATCCAAGATATTTGAACTTTTCTCTCCTAGCGATGACCTTAGTATCAATCCTCACTTCCACATCCTCCTCATGGGTAATGTCACTGCACTTGCAATCTAAGTACTCAATCTTAGTCCTGCCCAACTTAAACCCTTTAAAGTCTCAGGTCTGTGTCCAACCTCTAGCTTATTGTCAATCGATACAATGCCATTTGCAAAACATTCACCCTTGGATATGTCGCAGTGCATTCATCATCAAGGCAAATAAAAATGGACTAAGCATGATCCCTGGTGTAACCCTATCATGTCTAAAAAATGCTCCGGATCTTCTCCCAAGTCCCATTATCCTCACCCGTGTCATGGATCGATCATACATGTCCTGATGTCCTTAATCTCCCTAATGTAGGCTTCATGTACTCCTTTAGCCTCCAAACATCTCCATAAAACTCTTCTAATGACTTTGTCGTATGTTTTTCGAACACCGTATGTAAGTCCCTCTTTTTCTCAAGATACTGCTCCTCCAATCTACTCACGAGATGATTGACTTCTATAGTTGAACGCCGTGGCATGAATTCAAATTTGTTCTTGGTGCTGCCCCAGAACCATTAGGTACACCGTACACATGGAGAGCCCTTGGAAAGGTAATATTGTAGACACCAATATCATTGGATCAATCAGTACAAGTTGGAACTGTTCATGCTCAAATTCATGTGACCAGCAGTTAACCCCACACTGTTGTTCAAATTATTGAACCCAAGCATTTGGGTTGTCATGTTCCATTTGGTCCTGTGCAAACTTAGTACTCAATCTCTATCCAACATGAAGCGCACGTTTGACAGTTTGGGCCTCATTCCAGTACTCTTCTAAAGAAATAAAATTGCTAGATAGGTCATACAATTCCATCATTCAGGGAACAGTCTTCACACCAACAAGAGTATGATCCATTGCAATCTCAGTGTTAGAACTGTTATGCCCCTTCTTTTGTTGTTGTCTCAGTGTCCACCTTGGAGTCATAGCGAAACTCTCTATCAGTTGACAGTACCTCAGATGGTATGCACCAAGTGATAGCAATTCCTGTTGCAACATATGACCACTGCAGAAGTTTGTCCCTCAAATTCCCTTTACTGGTGCACACTGCAAATGTTGTAGCTGTACCGAGGAAGCAAATTTGTCCGTAAAACATTCTTTCTAACTCACATTGCCATAAGCAACACGAGAGCTAAATAATATCCACTAAACAGAGGAGTCGATGTGAACATGCTTATACTTTACCAGTTCTTCTTCGACTTCAAGATAGCCATCTTGATCCATTTTACACCAGAATTATGCCAACTAACAAAGCTACACCGGAGATTGCCTTATCTGGACGAACCCACAGGAATCTTGCATTATCTCAAAACAATGTACATCTTCCTTGTTAGTTCCTTGTTGTGCATCACCAGAGATCATTGAATACCAGAACTGCTAGTTCTACATTAACAGTCTCTTCCTCAACATCTGTTGCTTCGTCTTCCTCATCTACAAGGGTACCCTGTGAACCATCTAACGATGAAGCAGGTTCCACTTCTTCATGATTTATTGCATCTATTTGCATGGTTGTAGCTTCAACAGTTGAAAGATCTGCCTCTACCACCATCTGCGTGTTGTAGCTTTTTCTTCCATGTGCTGCTGAGCATTTCTGGGCTTGGCTAAACTCATATCACCATACATCCATCTGATCATTCGTATTTTATGGAAATTGCTGGGGTGCCGGAAGCACAACACTCGCTCATGTAACATTGCTAGTCTTACGACTATTTTGTAGAACTTGTTTTGCTTGAAGGATGAAACACATAATTGAGGCTGCAACAGTTCTGCCCCATTTGGGCCTTTTAATTCCAATACTCTATAATTGATTTTTCGGAAAAATTAAGGGCATTTTAATGAAGTCAAGGGCACATGAGGCTGATTTACCGAAGAGGCACGGCCAAGTCCAAGCCGAGCACAACAGTCATGGTCATGCCATACAAATGGTTATAGAAAATCATCATCAAAATTTGAATTGATGAATATGAATGAGAAGTCTTAATGGATTAATGGTGTGGATACAGTGAAAGACCGTAAAATTCATGTAGCTTGGAGGGCTATTGTTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAAACCGTAAAATTCATGTAGCTTGGAGAGCTATTATTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAATATGTTTTAGCAGATGACATGTGAGATACAATGATCAAATAGCATCATGTGATGTTCTTGTTTTCATGTTTTATTAGGTTTAAATGATTAGATAGGTAATTGAAAACTGTGTGTTCTGATGAGAAAAATACAAGTTGAAGCCAAAGTTTAGGTACTTGCTTGTGATATCAGCTTGTGCTGTAGACAATGTGAATTGTTAAACATGAAATTGTATATGAATTTGTTACAGGAGGAGGTTCTGAAACCTATTTGTGTCTGATAACTTTACTAATATTTAGATATGGTTATAATAGTTTTTTAAAAAGGTAAAGTGCCTTTTCCTGTATTGCAGTCTAAGGATACGGGTGCGGATTCCTTAATATCTGGGTAATGAAAGAAATCTAGTTTATTTAACGAGGCTTTTTCAGTATATTGGTAGTTTTAGAAGTCTAATGATCCGTGAGACCTACTGTATGATGAATAAGTGGTACTATAGGTTCATATGTTATCACAAGAATGCGAGAAGGACAATTAGGATTTCTTTGAAGTACATGACAGTTGCTGGAATGAAGGTTAATTATATTTCAAGTGTGCCAAGTTTTCTTCCTTTTGTCTTGATATGGAAGCTGGTGGTTCTGTAAGGAGGGTTCTAATGAATGAACAATGTGTAACAGTATAATTTCTGGCCATGGAATGCATGGATTTGGTGGAAGATCAGAGGTACTTGGGCCTTTTAGCCTGTAGTCAGTGCAGGGTTGTTGATAGAGCATTCTTCTGGTATATCTTCATGTCTGTGCCATGTTCTTGCAGCATGCTAGTGACATGGTGCAAGACATGTGTCAACAAGAACCAGAACCTATTTATTTTGGGTAGTACCGAACAATTGGAATCACAAGAATAGAGAAGTTGCTGTAGAGGCGCTGCTCAATATCTCATGGTTGACTCTAAGATTGCGGCGAATCTTTATGCTGCTTTTTCGTTTTTATGGATGTGAGGATCCTGCAAATGTGATTGCTTCAAGCACTGACACAACATATTTGGAAGAAAAATTCCATCCCATAGTTTGAGTTAGGTGGAGAAACGGTTCACATGTTATTGCTATAGAGCTGGTCTGAATTTTATATTGGACGCTTAATGCTTAATATCTTGGTTTTCTTTTACATAAGAATGTGCTGCTTTCAGTTTGCAGAAGAAGAATCTGTAGGGATTGCCATGAATAACTTTACCATCTATAGATGAGTACTTTTTGCCTTTGGTTCTTTCTAGTGCTGGGTTATTGGGAATTATTTCCGAAACTCCTGTAATTTGGAAGCCATTTGTAGGACTTATTTGAAACTGCTACACTCTATTCCAGCCTTCGTGTTGCAACGTAGCCGTTTAGGAGGTCGTTGCAGCAGTTAATGCATTTTTTTGTCTGTTATAGGAATCAGGAAATGAATTAACTGATCTTTGTGGTGTGTAGTTTCTGAAAATAGCATTAAAGAGAATTTTTCTAGTTCCTTATCTGTTATATTCTATTTTTACTTTAGGAATTGTAACTTAGGCTCTTTATCATCTCACGGAAGCTTCTGCATTTCAAAGAAAATTGTGTTAATATCTTTCCTTTTATATGCCAATCTGATATTTGTGTTTAAGTGATCTGGGGCTTTGCAACTCTGATATTTTTTCTCTAAGGTAGAAAAATATGAGTATAAAACCAACTGTTGCATTGAGAGCCATTCTCGTTGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCCGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCGTCCAAGTGATGCACACAACTCATGTGTTATTTTTTTTTCTTCAATGTAACGTCTGAACTGTCAAAATAAAAGTTGTAGGGTGGTGGAATATGCCAGTCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTTCTTACAACTGCGGGACTCGTTAGTTCTGTACTAGTGGAAGTTGGAGTTTGTTGAAGT------G-ATCACTCAGTGCCTGTGCTAGATGCAATTTGTTTTCCCTCCAGTACCTGAGGTATGTAACTG----T-TACCAGTAAAGGATATATTACTGCTTCCGTGATACTTTCAAAAGCAAAATATATGTTT-TTATAAGGTTTTATAACATGAGATCTGTCAATAAACCCAGATGGAACTTCTGGTTCTGGGC</genome_strand>
        <mrna_strand>CTTCAGCCCATTCTCCCCGTATCTTTCTCCGGCGAGTCTCCGAGCAATCAGTTCCTCCGGCGGAAATCTAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACAAATATGAGTATAAAACCAACAGTTGCTTTGAGAGCCATTATTGTCGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCTGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCATCCAAGTGATGCACACAACTCATGTGTTA--TTTTTTTCTTCAGTGTAACGTATAAACTGTTAAAATAAAAGTTGTTGGGTGGTGGAATATGCCAGTCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTCCTTACAACTGCGGGACTCGTTAGTTCTGTACTAATGGAAGTAGGAGTTTGTTGAAGTGAAAAAGCATCACTCAGTGCCTGTGCTAGATGCAGTTTGTTTACCCTCCGGTACCTGAGGTATGTAATTGTTTTTGTACCAGTAAAGGATATATTACTGCTTCCGTGATACTTTCNAAAGCAAAATATATGTTTATTGTAAGGTTTTAAAACATGAGATCTGTNCATAAAACCAGATGGAACTTCTGGTTCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464009" ref_strand="+" ref_description="SGN-E464009 [cPRO-16-N21]">
      <seq>aacaaacagaaaccccgcattttcaaattaagctgtctccggtgcttcagcccattctccccgtatctttctccggcgagtctccgagcaatcagttcctccggcggaaatctagcggtagacaaatatgagtataaaaccaacagttgctttgagagccattattgtcggaggaatagctgcctttgcaaaaattggtggtgctgttaaagctgcaggaggagtaaaattaggtgcagctgctgctgccatgactgctgcagcaacagcagctgtatcaggatccaaacaggaagaaaagaaggatggttctcagcagttgtcatccaagtgatgcacacaactcatgtgttatttttttcttcagtgtaacgtataaactgttaaaataaaagttgttgggtggtggaatatgccagtcaaatggtttcccaggatgatctttaatagctaagatatatgggtccttacaactgcgggactcgttagttctgtactaatggaagtaggagtttgttgaagtgaaaaagcatcactcagtgcctgtgctagatgcagtttgtttaccctccggtacctgaggtatgtaattgtttttgtaccagtaaaggatatattactgcttccgtgatactttcaaaagcaaaatatatgtttttgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="8551" stop="1511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8251" g_stop="8135" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8134" i_stop="2347" i_length="5788">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.648" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2346" g_stop="1798" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="676" r_length="559" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E464009" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8251" e_stop="8135"/>
          <exon e_start="2346" e_stop="1798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAGAAACTCCGCATTTTCAAATTAAGCCGTCTCCGGTGCTTCAGCCCATTCTTCCCGTATCTTTCTCCGGTGAGTCTCCGAGCAATCAGTTCCTCCGGCTGAAATCTAGCGGTAAGTAATACTCTCGCGGTTTCTGCCTTTTGATTTTCATAACTATAATTTTATCTGTAATATGAGAATCCCCAATATGGGTTTGGTAGCATTGATATTTTCTGGTCTCCCACTGCCAAAATGAAGCCTCAAATCTTTTGTAAGATAATTTGCAGTCTTTTGCTTACACGAAATTGTTCAGTTTTTGGTCGTATTTGTCTTGCAACCCATGATAGTTTTGACAAATATCCTCAGCAGGTCCATGTATATGAAAGTTAGGAGATTCAAGCTGTGGAGGCAATGTCTGGTTTTTTGTTTTGGGGGTGGGGGGGATTACTAGATGTTGATTCCAATATCATGGCCTCATGGGGCAAGACAAGTTTTCTTTAGAATAGTTTTATGTGTGGGCAATCGAAGGACTTTGATGTAGTACTCACTGCTCATAATGTGTCAGCAACATAACTCAAGAAGTTTGTTAAGTTGCAAATTTGGGTTGGTTTACTATACAATCTGGAATTGGAAGCTAACTAAGCTTGAGAAATTACAGCAAAACACGAAAGAAGAAATAAGAGGGTCTAAGAACTACCCTAAAAACTAGGGCTAATTCATTCTCAAAATATAAGCAAGTCCTTTCAGGGGGAAGTTATTTATAGGCTTAATACAAAGGGAAGTAGGATGGGAATGAGCAAACATGCTTCTCTAAAACAAGCCATAAGTGCCCAATGCTAACTTGAGCCTCCTTAATTCCTTGCCAGTTGCTTTAAGAGGCTTAAGAAATTCATATCGTATCAAATCTCCCTCCTTCAACTCACCCTTGTCCTCAAAAGTGTGCATTGTAATAAGCAAAGAACTCATGTGTAGATTCACCGTTTGTAAACATTTTTGAGTGTTATCAAAAGAATAAAGCTCCAAAAAGCATTAAAATGCTACTCTAGTTCTGCTGGCTTTATTTTTCAAGAGCTTTTGCAGCACCTGAAACAACTGCAACTCCTCCCATGTCAAACTTAATTAGCTTTATCAAGCACCAGGTTCAGTGTTGATGTTGTACCACCACAGTCAAAAGTCAATTTCGTTCCAACCAAGGGTAACAACTTCTTTGTGACTTCTGCACTAGTAGGCTTATAAGATACAAACAACAACATACCCAATGAAATTCCACAAATGGGGTCTGAGAAGGGTGGTGTGTAACGGAACCTTACTCTTACCTCATGAAGGTATATAGGTTGATTCCGATAGACTCTCGGCTTAAGTAAAGCATAACAAAACAAGAAGAAAATATAATACTATTAGCAAATGACACGATAATTGAAGCATAGAAAACATGTAATAATAAAATCGAAAAGTATAAGAAAGTAGGAGAAGCGGAAATACTATTACCACTGATGAGGGAAACTAGATTGACTACCTACTAATCTTTCTATCCTTATCCTTTGACATCCATATCCTCTTATCTAGGGTCATGTCCTCGATAAACTGCAAGTGTTTCAAATCCTGTCCAATCACCTCCCCTCTCCCCAGTACTTCTTTGGCCTACCTTTACCCTTTCTTGGACCCACTATAGCCAACCTCTTATATCTCCTCACTGGGCATATGGACATCTCGTCTTCACATGTCCGAACCATCAATGTTTCACTTGCCTCCTACTTTTCCCAAATATCTTCGTTCCTAATCATATCTCGTCTAGTATGCCCACACTCTCAACATCCTTATTTATGCTAATTTCATCTTGACGTGCGAGTTCTTGAACGACCAACACGTGGTCCCTTACAAAGTAGCTGGTCGAATAACCACTTTATGAAACTTATCTTTAAGACTTGGGTGGCACATTCTAATCACATAAGACACTGTATGTGAGCCTCTATTTCCTCCACCTCACTTCAATACGATGTATTACATCCTTGTCGACCTCACTATATCCTTGGCTTAAAGATCCAAGATATTTGAACTTTTCTCTCCTAGCGATGACCTTAGTATCAATCCTCACTTCCACATCCTCCTCATGGGTAATGTCACTGCACTTGCAATCTAAGTACTCAATCTTAGTCCTGCCCAACTTAAACCCTTTAAAGTCTCAGGTCTGTGTCCAACCTCTAGCTTATTGTCAATCGATACAATGCCATTTGCAAAACATTCACCCTTGGATATGTCGCAGTGCATTCATCATCAAGGCAAATAAAAATGGACTAAGCATGATCCCTGGTGTAACCCTATCATGTCTAAAAAATGCTCCGGATCTTCTCCCAAGTCCCATTATCCTCACCCGTGTCATGGATCGATCATACATGTCCTGATGTCCTTAATCTCCCTAATGTAGGCTTCATGTACTCCTTTAGCCTCCAAACATCTCCATAAAACTCTTCTAATGACTTTGTCGTATGTTTTTCGAACACCGTATGTAAGTCCCTCTTTTTCTCAAGATACTGCTCCTCCAATCTACTCACGAGATGATTGACTTCTATAGTTGAACGCCGTGGCATGAATTCAAATTTGTTCTTGGTGCTGCCCCAGAACCATTAGGTACACCGTACACATGGAGAGCCCTTGGAAAGGTAATATTGTAGACACCAATATCATTGGATCAATCAGTACAAGTTGGAACTGTTCATGCTCAAATTCATGTGACCAGCAGTTAACCCCACACTGTTGTTCAAATTATTGAACCCAAGCATTTGGGTTGTCATGTTCCATTTGGTCCTGTGCAAACTTAGTACTCAATCTCTATCCAACATGAAGCGCACGTTTGACAGTTTGGGCCTCATTCCAGTACTCTTCTAAAGAAATAAAATTGCTAGATAGGTCATACAATTCCATCATTCAGGGAACAGTCTTCACACCAACAAGAGTATGATCCATTGCAATCTCAGTGTTAGAACTGTTATGCCCCTTCTTTTGTTGTTGTCTCAGTGTCCACCTTGGAGTCATAGCGAAACTCTCTATCAGTTGACAGTACCTCAGATGGTATGCACCAAGTGATAGCAATTCCTGTTGCAACATATGACCACTGCAGAAGTTTGTCCCTCAAATTCCCTTTACTGGTGCACACTGCAAATGTTGTAGCTGTACCGAGGAAGCAAATTTGTCCGTAAAACATTCTTTCTAACTCACATTGCCATAAGCAACACGAGAGCTAAATAATATCCACTAAACAGAGGAGTCGATGTGAACATGCTTATACTTTACCAGTTCTTCTTCGACTTCAAGATAGCCATCTTGATCCATTTTACACCAGAATTATGCCAACTAACAAAGCTACACCGGAGATTGCCTTATCTGGACGAACCCACAGGAATCTTGCATTATCTCAAAACAATGTACATCTTCCTTGTTAGTTCCTTGTTGTGCATCACCAGAGATCATTGAATACCAGAACTGCTAGTTCTACATTAACAGTCTCTTCCTCAACATCTGTTGCTTCGTCTTCCTCATCTACAAGGGTACCCTGTGAACCATCTAACGATGAAGCAGGTTCCACTTCTTCATGATTTATTGCATCTATTTGCATGGTTGTAGCTTCAACAGTTGAAAGATCTGCCTCTACCACCATCTGCGTGTTGTAGCTTTTTCTTCCATGTGCTGCTGAGCATTTCTGGGCTTGGCTAAACTCATATCACCATACATCCATCTGATCATTCGTATTTTATGGAAATTGCTGGGGTGCCGGAAGCACAACACTCGCTCATGTAACATTGCTAGTCTTACGACTATTTTGTAGAACTTGTTTTGCTTGAAGGATGAAACACATAATTGAGGCTGCAACAGTTCTGCCCCATTTGGGCCTTTTAATTCCAATACTCTATAATTGATTTTTCGGAAAAATTAAGGGCATTTTAATGAAGTCAAGGGCACATGAGGCTGATTTACCGAAGAGGCACGGCCAAGTCCAAGCCGAGCACAACAGTCATGGTCATGCCATACAAATGGTTATAGAAAATCATCATCAAAATTTGAATTGATGAATATGAATGAGAAGTCTTAATGGATTAATGGTGTGGATACAGTGAAAGACCGTAAAATTCATGTAGCTTGGAGGGCTATTGTTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAAACCGTAAAATTCATGTAGCTTGGAGAGCTATTATTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAATATGTTTTAGCAGATGACATGTGAGATACAATGATCAAATAGCATCATGTGATGTTCTTGTTTTCATGTTTTATTAGGTTTAAATGATTAGATAGGTAATTGAAAACTGTGTGTTCTGATGAGAAAAATACAAGTTGAAGCCAAAGTTTAGGTACTTGCTTGTGATATCAGCTTGTGCTGTAGACAATGTGAATTGTTAAACATGAAATTGTATATGAATTTGTTACAGGAGGAGGTTCTGAAACCTATTTGTGTCTGATAACTTTACTAATATTTAGATATGGTTATAATAGTTTTTTAAAAAGGTAAAGTGCCTTTTCCTGTATTGCAGTCTAAGGATACGGGTGCGGATTCCTTAATATCTGGGTAATGAAAGAAATCTAGTTTATTTAACGAGGCTTTTTCAGTATATTGGTAGTTTTAGAAGTCTAATGATCCGTGAGACCTACTGTATGATGAATAAGTGGTACTATAGGTTCATATGTTATCACAAGAATGCGAGAAGGACAATTAGGATTTCTTTGAAGTACATGACAGTTGCTGGAATGAAGGTTAATTATATTTCAAGTGTGCCAAGTTTTCTTCCTTTTGTCTTGATATGGAAGCTGGTGGTTCTGTAAGGAGGGTTCTAATGAATGAACAATGTGTAACAGTATAATTTCTGGCCATGGAATGCATGGATTTGGTGGAAGATCAGAGGTACTTGGGCCTTTTAGCCTGTAGTCAGTGCAGGGTTGTTGATAGAGCATTCTTCTGGTATATCTTCATGTCTGTGCCATGTTCTTGCAGCATGCTAGTGACATGGTGCAAGACATGTGTCAACAAGAACCAGAACCTATTTATTTTGGGTAGTACCGAACAATTGGAATCACAAGAATAGAGAAGTTGCTGTAGAGGCGCTGCTCAATATCTCATGGTTGACTCTAAGATTGCGGCGAATCTTTATGCTGCTTTTTCGTTTTTATGGATGTGAGGATCCTGCAAATGTGATTGCTTCAAGCACTGACACAACATATTTGGAAGAAAAATTCCATCCCATAGTTTGAGTTAGGTGGAGAAACGGTTCACATGTTATTGCTATAGAGCTGGTCTGAATTTTATATTGGACGCTTAATGCTTAATATCTTGGTTTTCTTTTACATAAGAATGTGCTGCTTTCAGTTTGCAGAAGAAGAATCTGTAGGGATTGCCATGAATAACTTTACCATCTATAGATGAGTACTTTTTGCCTTTGGTTCTTTCTAGTGCTGGGTTATTGGGAATTATTTCCGAAACTCCTGTAATTTGGAAGCCATTTGTAGGACTTATTTGAAACTGCTACACTCTATTCCAGCCTTCGTGTTGCAACGTAGCCGTTTAGGAGGTCGTTGCAGCAGTTAATGCATTTTTTTGTCTGTTATAGGAATCAGGAAATGAATTAACTGATCTTTGTGGTGTGTAGTTTCTGAAAATAGCATTAAAGAGAATTTTTCTAGTTCCTTATCTGTTATATTCTATTTTTACTTTAGGAATTGTAACTTAGGCTCTTTATCATCTCACGGAAGCTTCTGCATTTCAAAGAAAATTGTGTTAATATCTTTCCTTTTATATGCCAATCTGATATTTGTGTTTAAGTGATCTGGGGCTTTGCAACTCTGATATTTTTTCTCTAAGGTAGAAAAATATGAGTATAAAACCAACTGTTGCATTGAGAGCCATTCTCGTTGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCCGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCGTCCAAGTGATGCACACAACTCATGTGTTATTTTTTTTTCTTCAATGTAACGTCTGAACTGTCAAAATAAAAGTTGTAGGGTGGTGGAATATGCCAGTCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTTCTTACAACTGCGGGACTCGTTAGTTCTGTACTAGTGGAAGTTGGAGTTTGTTGAAGT------G-ATCACTCAGTGCCTGTGCTAGATGCAATTTGTTTTCCCTCCAGTACCTGAGGTATGTAACTG-TT----ACCAGTAAAGGATATATTACTGCTTCCGTGATACTTTCAAAAGCAAAATATATGTTTTTATAAGGTTTTATAACAT</genome_strand>
        <mrna_strand>AACAAACAGAAACCCCGCATTTTCAAATTAAGCTGTCTCCGGTGCTTCAGCCCATTCTCCCCGTATCTTTCTCCGGCGAGTCTCCGAGCAATCAGTTCCTCCGGCGGAAATCTAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACAAATATGAGTATAAAACCAACAGTTGCTTTGAGAGCCATTATTGTCGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCTGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCATCCAAGTGATGCACACAACTCATGTGTTA--TTTTTTTCTTCAGTGTAACGTATAAACTGTTAAAATAAAAGTTGTTGGGTGGTGGAATATGCCAGTCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTCCTTACAACTGCGGGACTCGTTAGTTCTGTACTAATGGAAGTAGGAGTTTGTTGAAGTGAAAAAGCATCACTCAGTGCCTGTGCTAGATGCAGTTTGTTTACCCTCCGGTACCTGAGGTATGTAATTGTTTTTGTACCAGTAAAGGATATATTACTGCTTCCGTGATACTTTCAAAAGCAAAATATATGTTTTTGTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435170" ref_strand="+" ref_description="SGN-E435170 [STM-61-I9]">
      <seq>aacaaacagaaaccccgcattttcaaattaagctgtctccggtgcttcagcccattctccccgtatctttctccggcgagtctccgagcaatcagttcctccggcggaaatctagcggtagacaaatatgagtataaaaccaacagttgctttgagagccattattgtcggaggaatagctgcctttgcaaaaattggtggtgctgttaaagctgcaggaggagtaaaattaggtgcagctgctgctgccatgactgctgcagcaacagcagctgtatcaggatccaaacaggaagaaaagaaggatggttctcagcagttgtcatccaagtgatgcacacaactcatgtgttatttttttcttcagtgtaacgtataaactgttaaaataaaagttgttgggtggtggaatatgccagtcaaatggtttcccaggatgatctttaatagctaagatatatgggtccttacaactgcgggactcgttagttctgtactaatggaagtaggagtttgttgaagtgaaaaagcatcactcagtgcctgtgctagatgcagtttgtttaccctccggtacctgaggtatgtaattgtttttgtaccagtaaaggatatattactgcttccgtgatactttcaaaagcaaaatatatgtttttggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="8551" stop="1515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8251" g_stop="8135" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8134" i_stop="2347" i_length="5788">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.648" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2346" g_stop="1815" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="659" r_length="542" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="678"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E435170" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8251" e_stop="8135"/>
          <exon e_start="2346" e_stop="1815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAGAAACTCCGCATTTTCAAATTAAGCCGTCTCCGGTGCTTCAGCCCATTCTTCCCGTATCTTTCTCCGGTGAGTCTCCGAGCAATCAGTTCCTCCGGCTGAAATCTAGCGGTAAGTAATACTCTCGCGGTTTCTGCCTTTTGATTTTCATAACTATAATTTTATCTGTAATATGAGAATCCCCAATATGGGTTTGGTAGCATTGATATTTTCTGGTCTCCCACTGCCAAAATGAAGCCTCAAATCTTTTGTAAGATAATTTGCAGTCTTTTGCTTACACGAAATTGTTCAGTTTTTGGTCGTATTTGTCTTGCAACCCATGATAGTTTTGACAAATATCCTCAGCAGGTCCATGTATATGAAAGTTAGGAGATTCAAGCTGTGGAGGCAATGTCTGGTTTTTTGTTTTGGGGGTGGGGGGGATTACTAGATGTTGATTCCAATATCATGGCCTCATGGGGCAAGACAAGTTTTCTTTAGAATAGTTTTATGTGTGGGCAATCGAAGGACTTTGATGTAGTACTCACTGCTCATAATGTGTCAGCAACATAACTCAAGAAGTTTGTTAAGTTGCAAATTTGGGTTGGTTTACTATACAATCTGGAATTGGAAGCTAACTAAGCTTGAGAAATTACAGCAAAACACGAAAGAAGAAATAAGAGGGTCTAAGAACTACCCTAAAAACTAGGGCTAATTCATTCTCAAAATATAAGCAAGTCCTTTCAGGGGGAAGTTATTTATAGGCTTAATACAAAGGGAAGTAGGATGGGAATGAGCAAACATGCTTCTCTAAAACAAGCCATAAGTGCCCAATGCTAACTTGAGCCTCCTTAATTCCTTGCCAGTTGCTTTAAGAGGCTTAAGAAATTCATATCGTATCAAATCTCCCTCCTTCAACTCACCCTTGTCCTCAAAAGTGTGCATTGTAATAAGCAAAGAACTCATGTGTAGATTCACCGTTTGTAAACATTTTTGAGTGTTATCAAAAGAATAAAGCTCCAAAAAGCATTAAAATGCTACTCTAGTTCTGCTGGCTTTATTTTTCAAGAGCTTTTGCAGCACCTGAAACAACTGCAACTCCTCCCATGTCAAACTTAATTAGCTTTATCAAGCACCAGGTTCAGTGTTGATGTTGTACCACCACAGTCAAAAGTCAATTTCGTTCCAACCAAGGGTAACAACTTCTTTGTGACTTCTGCACTAGTAGGCTTATAAGATACAAACAACAACATACCCAATGAAATTCCACAAATGGGGTCTGAGAAGGGTGGTGTGTAACGGAACCTTACTCTTACCTCATGAAGGTATATAGGTTGATTCCGATAGACTCTCGGCTTAAGTAAAGCATAACAAAACAAGAAGAAAATATAATACTATTAGCAAATGACACGATAATTGAAGCATAGAAAACATGTAATAATAAAATCGAAAAGTATAAGAAAGTAGGAGAAGCGGAAATACTATTACCACTGATGAGGGAAACTAGATTGACTACCTACTAATCTTTCTATCCTTATCCTTTGACATCCATATCCTCTTATCTAGGGTCATGTCCTCGATAAACTGCAAGTGTTTCAAATCCTGTCCAATCACCTCCCCTCTCCCCAGTACTTCTTTGGCCTACCTTTACCCTTTCTTGGACCCACTATAGCCAACCTCTTATATCTCCTCACTGGGCATATGGACATCTCGTCTTCACATGTCCGAACCATCAATGTTTCACTTGCCTCCTACTTTTCCCAAATATCTTCGTTCCTAATCATATCTCGTCTAGTATGCCCACACTCTCAACATCCTTATTTATGCTAATTTCATCTTGACGTGCGAGTTCTTGAACGACCAACACGTGGTCCCTTACAAAGTAGCTGGTCGAATAACCACTTTATGAAACTTATCTTTAAGACTTGGGTGGCACATTCTAATCACATAAGACACTGTATGTGAGCCTCTATTTCCTCCACCTCACTTCAATACGATGTATTACATCCTTGTCGACCTCACTATATCCTTGGCTTAAAGATCCAAGATATTTGAACTTTTCTCTCCTAGCGATGACCTTAGTATCAATCCTCACTTCCACATCCTCCTCATGGGTAATGTCACTGCACTTGCAATCTAAGTACTCAATCTTAGTCCTGCCCAACTTAAACCCTTTAAAGTCTCAGGTCTGTGTCCAACCTCTAGCTTATTGTCAATCGATACAATGCCATTTGCAAAACATTCACCCTTGGATATGTCGCAGTGCATTCATCATCAAGGCAAATAAAAATGGACTAAGCATGATCCCTGGTGTAACCCTATCATGTCTAAAAAATGCTCCGGATCTTCTCCCAAGTCCCATTATCCTCACCCGTGTCATGGATCGATCATACATGTCCTGATGTCCTTAATCTCCCTAATGTAGGCTTCATGTACTCCTTTAGCCTCCAAACATCTCCATAAAACTCTTCTAATGACTTTGTCGTATGTTTTTCGAACACCGTATGTAAGTCCCTCTTTTTCTCAAGATACTGCTCCTCCAATCTACTCACGAGATGATTGACTTCTATAGTTGAACGCCGTGGCATGAATTCAAATTTGTTCTTGGTGCTGCCCCAGAACCATTAGGTACACCGTACACATGGAGAGCCCTTGGAAAGGTAATATTGTAGACACCAATATCATTGGATCAATCAGTACAAGTTGGAACTGTTCATGCTCAAATTCATGTGACCAGCAGTTAACCCCACACTGTTGTTCAAATTATTGAACCCAAGCATTTGGGTTGTCATGTTCCATTTGGTCCTGTGCAAACTTAGTACTCAATCTCTATCCAACATGAAGCGCACGTTTGACAGTTTGGGCCTCATTCCAGTACTCTTCTAAAGAAATAAAATTGCTAGATAGGTCATACAATTCCATCATTCAGGGAACAGTCTTCACACCAACAAGAGTATGATCCATTGCAATCTCAGTGTTAGAACTGTTATGCCCCTTCTTTTGTTGTTGTCTCAGTGTCCACCTTGGAGTCATAGCGAAACTCTCTATCAGTTGACAGTACCTCAGATGGTATGCACCAAGTGATAGCAATTCCTGTTGCAACATATGACCACTGCAGAAGTTTGTCCCTCAAATTCCCTTTACTGGTGCACACTGCAAATGTTGTAGCTGTACCGAGGAAGCAAATTTGTCCGTAAAACATTCTTTCTAACTCACATTGCCATAAGCAACACGAGAGCTAAATAATATCCACTAAACAGAGGAGTCGATGTGAACATGCTTATACTTTACCAGTTCTTCTTCGACTTCAAGATAGCCATCTTGATCCATTTTACACCAGAATTATGCCAACTAACAAAGCTACACCGGAGATTGCCTTATCTGGACGAACCCACAGGAATCTTGCATTATCTCAAAACAATGTACATCTTCCTTGTTAGTTCCTTGTTGTGCATCACCAGAGATCATTGAATACCAGAACTGCTAGTTCTACATTAACAGTCTCTTCCTCAACATCTGTTGCTTCGTCTTCCTCATCTACAAGGGTACCCTGTGAACCATCTAACGATGAAGCAGGTTCCACTTCTTCATGATTTATTGCATCTATTTGCATGGTTGTAGCTTCAACAGTTGAAAGATCTGCCTCTACCACCATCTGCGTGTTGTAGCTTTTTCTTCCATGTGCTGCTGAGCATTTCTGGGCTTGGCTAAACTCATATCACCATACATCCATCTGATCATTCGTATTTTATGGAAATTGCTGGGGTGCCGGAAGCACAACACTCGCTCATGTAACATTGCTAGTCTTACGACTATTTTGTAGAACTTGTTTTGCTTGAAGGATGAAACACATAATTGAGGCTGCAACAGTTCTGCCCCATTTGGGCCTTTTAATTCCAATACTCTATAATTGATTTTTCGGAAAAATTAAGGGCATTTTAATGAAGTCAAGGGCACATGAGGCTGATTTACCGAAGAGGCACGGCCAAGTCCAAGCCGAGCACAACAGTCATGGTCATGCCATACAAATGGTTATAGAAAATCATCATCAAAATTTGAATTGATGAATATGAATGAGAAGTCTTAATGGATTAATGGTGTGGATACAGTGAAAGACCGTAAAATTCATGTAGCTTGGAGGGCTATTGTTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAAACCGTAAAATTCATGTAGCTTGGAGAGCTATTATTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAATATGTTTTAGCAGATGACATGTGAGATACAATGATCAAATAGCATCATGTGATGTTCTTGTTTTCATGTTTTATTAGGTTTAAATGATTAGATAGGTAATTGAAAACTGTGTGTTCTGATGAGAAAAATACAAGTTGAAGCCAAAGTTTAGGTACTTGCTTGTGATATCAGCTTGTGCTGTAGACAATGTGAATTGTTAAACATGAAATTGTATATGAATTTGTTACAGGAGGAGGTTCTGAAACCTATTTGTGTCTGATAACTTTACTAATATTTAGATATGGTTATAATAGTTTTTTAAAAAGGTAAAGTGCCTTTTCCTGTATTGCAGTCTAAGGATACGGGTGCGGATTCCTTAATATCTGGGTAATGAAAGAAATCTAGTTTATTTAACGAGGCTTTTTCAGTATATTGGTAGTTTTAGAAGTCTAATGATCCGTGAGACCTACTGTATGATGAATAAGTGGTACTATAGGTTCATATGTTATCACAAGAATGCGAGAAGGACAATTAGGATTTCTTTGAAGTACATGACAGTTGCTGGAATGAAGGTTAATTATATTTCAAGTGTGCCAAGTTTTCTTCCTTTTGTCTTGATATGGAAGCTGGTGGTTCTGTAAGGAGGGTTCTAATGAATGAACAATGTGTAACAGTATAATTTCTGGCCATGGAATGCATGGATTTGGTGGAAGATCAGAGGTACTTGGGCCTTTTAGCCTGTAGTCAGTGCAGGGTTGTTGATAGAGCATTCTTCTGGTATATCTTCATGTCTGTGCCATGTTCTTGCAGCATGCTAGTGACATGGTGCAAGACATGTGTCAACAAGAACCAGAACCTATTTATTTTGGGTAGTACCGAACAATTGGAATCACAAGAATAGAGAAGTTGCTGTAGAGGCGCTGCTCAATATCTCATGGTTGACTCTAAGATTGCGGCGAATCTTTATGCTGCTTTTTCGTTTTTATGGATGTGAGGATCCTGCAAATGTGATTGCTTCAAGCACTGACACAACATATTTGGAAGAAAAATTCCATCCCATAGTTTGAGTTAGGTGGAGAAACGGTTCACATGTTATTGCTATAGAGCTGGTCTGAATTTTATATTGGACGCTTAATGCTTAATATCTTGGTTTTCTTTTACATAAGAATGTGCTGCTTTCAGTTTGCAGAAGAAGAATCTGTAGGGATTGCCATGAATAACTTTACCATCTATAGATGAGTACTTTTTGCCTTTGGTTCTTTCTAGTGCTGGGTTATTGGGAATTATTTCCGAAACTCCTGTAATTTGGAAGCCATTTGTAGGACTTATTTGAAACTGCTACACTCTATTCCAGCCTTCGTGTTGCAACGTAGCCGTTTAGGAGGTCGTTGCAGCAGTTAATGCATTTTTTTGTCTGTTATAGGAATCAGGAAATGAATTAACTGATCTTTGTGGTGTGTAGTTTCTGAAAATAGCATTAAAGAGAATTTTTCTAGTTCCTTATCTGTTATATTCTATTTTTACTTTAGGAATTGTAACTTAGGCTCTTTATCATCTCACGGAAGCTTCTGCATTTCAAAGAAAATTGTGTTAATATCTTTCCTTTTATATGCCAATCTGATATTTGTGTTTAAGTGATCTGGGGCTTTGCAACTCTGATATTTTTTCTCTAAGGTAGAAAAATATGAGTATAAAACCAACTGTTGCATTGAGAGCCATTCTCGTTGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCCGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCGTCCAAGTGATGCACACAACTCATGTGTTATTTTTTTTTCTTCAATGTAACGTCTGAACTGTCAAAATAAAAGTTGTAGGGTGGTGGAATATGCCAGTCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTTCTTACAACTGCGGGACTCGTTAGTTCTGTACTAGTGGAAGTTGGAGTTTGTTGAAGT------G-ATCACTCAGTGCCTGTGCTAGATGCAATTTGTTTTCCCTCCAGTACCTGAGGTATGTAACTG---TT--ACCAGTAAAGGATATATTACTGCTTCCGTGATACTTTCAAAAGCAAAATATATGTTTTT</genome_strand>
        <mrna_strand>AACAAACAGAAACCCCGCATTTTCAAATTAAGCTGTCTCCGGTGCTTCAGCCCATTCTCCCCGTATCTTTCTCCGGCGAGTCTCCGAGCAATCAGTTCCTCCGGCGGAAATCTAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACAAATATGAGTATAAAACCAACAGTTGCTTTGAGAGCCATTATTGTCGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCTGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCATCCAAGTGATGCACACAACTCATGTGTTA--TTTTTTTCTTCAGTGTAACGTATAAACTGTTAAAATAAAAGTTGTTGGGTGGTGGAATATGCCAGTCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTCCTTACAACTGCGGGACTCGTTAGTTCTGTACTAATGGAAGTAGGAGTTTGTTGAAGTGAAAAAGCATCACTCAGTGCCTGTGCTAGATGCAGTTTGTTTACCCTCCGGTACCTGAGGTATGTAATTGTTTTTGTACCAGTAAAGGATATATTACTGCTTCCGTGATACTTTCAAAAGCAAAATATATGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375930" ref_strand="+" ref_description="SGN-E375930 [TUS-40-A16]">
      <seq>aaacagaaaccccgcattttcaaattaagccgtctccggtgcttcagcccattcttcccgtatctttctccggcgagtctccgagcaatcagttcctccggctgaaatctagcggtagaaaaatatgagtataaaaccaactgttgcattgagagccattctcgttggaggaatagctgcctttgcaaaaattggtggtgccgttaaagctgcaggaggagtaaaattaggtgcagctgctgctgccatgactgctgcagcaacagcagctgtatcaggatccaaacaggaagaaaagaaggatggttctcagcagttgtcgtccaagtgatgcacacaactcatgtgttattttttttcttcaatgtaacgtctaaactgtcaaaataaaagttgtagggtggtggaatatgccaatcaaatggtttcccaggatgatctttaatagctaagatatatgggttcttacaactgcgggactcgttagttctgtactagtggaagttggagtttgttgaagtgatcactcagtgcctgtgctagatgcaatttgttttccctccagtacctgaggtatgtaactgtttttgtaccagtaaaggatatattactgcttccgtgatacttttcaaaagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="8548" stop="1522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8248" g_stop="8135" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8134" i_stop="2347" i_length="5788">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2346" g_stop="1820" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="646" r_length="532" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E375930" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8248" e_stop="8135"/>
          <exon e_start="2346" e_stop="1820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAAACTCCGCATTTTCAAATTAAGCCGTCTCCGGTGCTTCAGCCCATTCTTCCCGTATCTTTCTCCGGTGAGTCTCCGAGCAATCAGTTCCTCCGGCTGAAATCTAGCGGTAAGTAATACTCTCGCGGTTTCTGCCTTTTGATTTTCATAACTATAATTTTATCTGTAATATGAGAATCCCCAATATGGGTTTGGTAGCATTGATATTTTCTGGTCTCCCACTGCCAAAATGAAGCCTCAAATCTTTTGTAAGATAATTTGCAGTCTTTTGCTTACACGAAATTGTTCAGTTTTTGGTCGTATTTGTCTTGCAACCCATGATAGTTTTGACAAATATCCTCAGCAGGTCCATGTATATGAAAGTTAGGAGATTCAAGCTGTGGAGGCAATGTCTGGTTTTTTGTTTTGGGGGTGGGGGGGATTACTAGATGTTGATTCCAATATCATGGCCTCATGGGGCAAGACAAGTTTTCTTTAGAATAGTTTTATGTGTGGGCAATCGAAGGACTTTGATGTAGTACTCACTGCTCATAATGTGTCAGCAACATAACTCAAGAAGTTTGTTAAGTTGCAAATTTGGGTTGGTTTACTATACAATCTGGAATTGGAAGCTAACTAAGCTTGAGAAATTACAGCAAAACACGAAAGAAGAAATAAGAGGGTCTAAGAACTACCCTAAAAACTAGGGCTAATTCATTCTCAAAATATAAGCAAGTCCTTTCAGGGGGAAGTTATTTATAGGCTTAATACAAAGGGAAGTAGGATGGGAATGAGCAAACATGCTTCTCTAAAACAAGCCATAAGTGCCCAATGCTAACTTGAGCCTCCTTAATTCCTTGCCAGTTGCTTTAAGAGGCTTAAGAAATTCATATCGTATCAAATCTCCCTCCTTCAACTCACCCTTGTCCTCAAAAGTGTGCATTGTAATAAGCAAAGAACTCATGTGTAGATTCACCGTTTGTAAACATTTTTGAGTGTTATCAAAAGAATAAAGCTCCAAAAAGCATTAAAATGCTACTCTAGTTCTGCTGGCTTTATTTTTCAAGAGCTTTTGCAGCACCTGAAACAACTGCAACTCCTCCCATGTCAAACTTAATTAGCTTTATCAAGCACCAGGTTCAGTGTTGATGTTGTACCACCACAGTCAAAAGTCAATTTCGTTCCAACCAAGGGTAACAACTTCTTTGTGACTTCTGCACTAGTAGGCTTATAAGATACAAACAACAACATACCCAATGAAATTCCACAAATGGGGTCTGAGAAGGGTGGTGTGTAACGGAACCTTACTCTTACCTCATGAAGGTATATAGGTTGATTCCGATAGACTCTCGGCTTAAGTAAAGCATAACAAAACAAGAAGAAAATATAATACTATTAGCAAATGACACGATAATTGAAGCATAGAAAACATGTAATAATAAAATCGAAAAGTATAAGAAAGTAGGAGAAGCGGAAATACTATTACCACTGATGAGGGAAACTAGATTGACTACCTACTAATCTTTCTATCCTTATCCTTTGACATCCATATCCTCTTATCTAGGGTCATGTCCTCGATAAACTGCAAGTGTTTCAAATCCTGTCCAATCACCTCCCCTCTCCCCAGTACTTCTTTGGCCTACCTTTACCCTTTCTTGGACCCACTATAGCCAACCTCTTATATCTCCTCACTGGGCATATGGACATCTCGTCTTCACATGTCCGAACCATCAATGTTTCACTTGCCTCCTACTTTTCCCAAATATCTTCGTTCCTAATCATATCTCGTCTAGTATGCCCACACTCTCAACATCCTTATTTATGCTAATTTCATCTTGACGTGCGAGTTCTTGAACGACCAACACGTGGTCCCTTACAAAGTAGCTGGTCGAATAACCACTTTATGAAACTTATCTTTAAGACTTGGGTGGCACATTCTAATCACATAAGACACTGTATGTGAGCCTCTATTTCCTCCACCTCACTTCAATACGATGTATTACATCCTTGTCGACCTCACTATATCCTTGGCTTAAAGATCCAAGATATTTGAACTTTTCTCTCCTAGCGATGACCTTAGTATCAATCCTCACTTCCACATCCTCCTCATGGGTAATGTCACTGCACTTGCAATCTAAGTACTCAATCTTAGTCCTGCCCAACTTAAACCCTTTAAAGTCTCAGGTCTGTGTCCAACCTCTAGCTTATTGTCAATCGATACAATGCCATTTGCAAAACATTCACCCTTGGATATGTCGCAGTGCATTCATCATCAAGGCAAATAAAAATGGACTAAGCATGATCCCTGGTGTAACCCTATCATGTCTAAAAAATGCTCCGGATCTTCTCCCAAGTCCCATTATCCTCACCCGTGTCATGGATCGATCATACATGTCCTGATGTCCTTAATCTCCCTAATGTAGGCTTCATGTACTCCTTTAGCCTCCAAACATCTCCATAAAACTCTTCTAATGACTTTGTCGTATGTTTTTCGAACACCGTATGTAAGTCCCTCTTTTTCTCAAGATACTGCTCCTCCAATCTACTCACGAGATGATTGACTTCTATAGTTGAACGCCGTGGCATGAATTCAAATTTGTTCTTGGTGCTGCCCCAGAACCATTAGGTACACCGTACACATGGAGAGCCCTTGGAAAGGTAATATTGTAGACACCAATATCATTGGATCAATCAGTACAAGTTGGAACTGTTCATGCTCAAATTCATGTGACCAGCAGTTAACCCCACACTGTTGTTCAAATTATTGAACCCAAGCATTTGGGTTGTCATGTTCCATTTGGTCCTGTGCAAACTTAGTACTCAATCTCTATCCAACATGAAGCGCACGTTTGACAGTTTGGGCCTCATTCCAGTACTCTTCTAAAGAAATAAAATTGCTAGATAGGTCATACAATTCCATCATTCAGGGAACAGTCTTCACACCAACAAGAGTATGATCCATTGCAATCTCAGTGTTAGAACTGTTATGCCCCTTCTTTTGTTGTTGTCTCAGTGTCCACCTTGGAGTCATAGCGAAACTCTCTATCAGTTGACAGTACCTCAGATGGTATGCACCAAGTGATAGCAATTCCTGTTGCAACATATGACCACTGCAGAAGTTTGTCCCTCAAATTCCCTTTACTGGTGCACACTGCAAATGTTGTAGCTGTACCGAGGAAGCAAATTTGTCCGTAAAACATTCTTTCTAACTCACATTGCCATAAGCAACACGAGAGCTAAATAATATCCACTAAACAGAGGAGTCGATGTGAACATGCTTATACTTTACCAGTTCTTCTTCGACTTCAAGATAGCCATCTTGATCCATTTTACACCAGAATTATGCCAACTAACAAAGCTACACCGGAGATTGCCTTATCTGGACGAACCCACAGGAATCTTGCATTATCTCAAAACAATGTACATCTTCCTTGTTAGTTCCTTGTTGTGCATCACCAGAGATCATTGAATACCAGAACTGCTAGTTCTACATTAACAGTCTCTTCCTCAACATCTGTTGCTTCGTCTTCCTCATCTACAAGGGTACCCTGTGAACCATCTAACGATGAAGCAGGTTCCACTTCTTCATGATTTATTGCATCTATTTGCATGGTTGTAGCTTCAACAGTTGAAAGATCTGCCTCTACCACCATCTGCGTGTTGTAGCTTTTTCTTCCATGTGCTGCTGAGCATTTCTGGGCTTGGCTAAACTCATATCACCATACATCCATCTGATCATTCGTATTTTATGGAAATTGCTGGGGTGCCGGAAGCACAACACTCGCTCATGTAACATTGCTAGTCTTACGACTATTTTGTAGAACTTGTTTTGCTTGAAGGATGAAACACATAATTGAGGCTGCAACAGTTCTGCCCCATTTGGGCCTTTTAATTCCAATACTCTATAATTGATTTTTCGGAAAAATTAAGGGCATTTTAATGAAGTCAAGGGCACATGAGGCTGATTTACCGAAGAGGCACGGCCAAGTCCAAGCCGAGCACAACAGTCATGGTCATGCCATACAAATGGTTATAGAAAATCATCATCAAAATTTGAATTGATGAATATGAATGAGAAGTCTTAATGGATTAATGGTGTGGATACAGTGAAAGACCGTAAAATTCATGTAGCTTGGAGGGCTATTGTTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAAACCGTAAAATTCATGTAGCTTGGAGAGCTATTATTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAATATGTTTTAGCAGATGACATGTGAGATACAATGATCAAATAGCATCATGTGATGTTCTTGTTTTCATGTTTTATTAGGTTTAAATGATTAGATAGGTAATTGAAAACTGTGTGTTCTGATGAGAAAAATACAAGTTGAAGCCAAAGTTTAGGTACTTGCTTGTGATATCAGCTTGTGCTGTAGACAATGTGAATTGTTAAACATGAAATTGTATATGAATTTGTTACAGGAGGAGGTTCTGAAACCTATTTGTGTCTGATAACTTTACTAATATTTAGATATGGTTATAATAGTTTTTTAAAAAGGTAAAGTGCCTTTTCCTGTATTGCAGTCTAAGGATACGGGTGCGGATTCCTTAATATCTGGGTAATGAAAGAAATCTAGTTTATTTAACGAGGCTTTTTCAGTATATTGGTAGTTTTAGAAGTCTAATGATCCGTGAGACCTACTGTATGATGAATAAGTGGTACTATAGGTTCATATGTTATCACAAGAATGCGAGAAGGACAATTAGGATTTCTTTGAAGTACATGACAGTTGCTGGAATGAAGGTTAATTATATTTCAAGTGTGCCAAGTTTTCTTCCTTTTGTCTTGATATGGAAGCTGGTGGTTCTGTAAGGAGGGTTCTAATGAATGAACAATGTGTAACAGTATAATTTCTGGCCATGGAATGCATGGATTTGGTGGAAGATCAGAGGTACTTGGGCCTTTTAGCCTGTAGTCAGTGCAGGGTTGTTGATAGAGCATTCTTCTGGTATATCTTCATGTCTGTGCCATGTTCTTGCAGCATGCTAGTGACATGGTGCAAGACATGTGTCAACAAGAACCAGAACCTATTTATTTTGGGTAGTACCGAACAATTGGAATCACAAGAATAGAGAAGTTGCTGTAGAGGCGCTGCTCAATATCTCATGGTTGACTCTAAGATTGCGGCGAATCTTTATGCTGCTTTTTCGTTTTTATGGATGTGAGGATCCTGCAAATGTGATTGCTTCAAGCACTGACACAACATATTTGGAAGAAAAATTCCATCCCATAGTTTGAGTTAGGTGGAGAAACGGTTCACATGTTATTGCTATAGAGCTGGTCTGAATTTTATATTGGACGCTTAATGCTTAATATCTTGGTTTTCTTTTACATAAGAATGTGCTGCTTTCAGTTTGCAGAAGAAGAATCTGTAGGGATTGCCATGAATAACTTTACCATCTATAGATGAGTACTTTTTGCCTTTGGTTCTTTCTAGTGCTGGGTTATTGGGAATTATTTCCGAAACTCCTGTAATTTGGAAGCCATTTGTAGGACTTATTTGAAACTGCTACACTCTATTCCAGCCTTCGTGTTGCAACGTAGCCGTTTAGGAGGTCGTTGCAGCAGTTAATGCATTTTTTTGTCTGTTATAGGAATCAGGAAATGAATTAACTGATCTTTGTGGTGTGTAGTTTCTGAAAATAGCATTAAAGAGAATTTTTCTAGTTCCTTATCTGTTATATTCTATTTTTACTTTAGGAATTGTAACTTAGGCTCTTTATCATCTCACGGAAGCTTCTGCATTTCAAAGAAAATTGTGTTAATATCTTTCCTTTTATATGCCAATCTGATATTTGTGTTTAAGTGATCTGGGGCTTTGCAACTCTGATATTTTTTCTCTAAGGTAGAAAAATATGAGTATAAAACCAACTGTTGCATTGAGAGCCATTCTCGTTGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCCGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCGTCCAAGTGATGCACACAACTCATGTGTTATTTTTTTTTCTTCAATGTAACGTCTGAACTGTCAAAATAAAAGTTGTAGGGTGGTGGAATATGCCAGTCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTTCTTACAACTGCGGGACTCGTTAGTTCTGTACTAGTGGAAGTTGGAGTTTGTTGAAGTGATCACTCAGTGCCTGTGCTAGATGCAATTTGTTTTCCCTCCAGTACCTGAGGTATGTAACTG----T-TACCAGTAAAGGATATATTACTGCTTCCGTGATAC-TTTCAAAAGCAAAATATATG</genome_strand>
        <mrna_strand>AAACAGAAACCCCGCATTTTCAAATTAAGCCGTCTCCGGTGCTTCAGCCCATTCTTCCCGTATCTTTCTCCGGCGAGTCTCCGAGCAATCAGTTCCTCCGGCTGAAATCTAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAAATATGAGTATAAAACCAACTGTTGCATTGAGAGCCATTCTCGTTGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCCGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCGTCCAAGTGATGCACACAACTCATGTGTTA-TTTTTTTTCTTCAATGTAACGTCTAAACTGTCAAAATAAAAGTTGTAGGGTGGTGGAATATGCCAATCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTTCTTACAACTGCGGGACTCGTTAGTTCTGTACTAGTGGAAGTTGGAGTTTGTTGAAGTGATCACTCAGTGCCTGTGCTAGATGCAATTTGTTTTCCCTCCAGTACCTGAGGTATGTAACTGTTTTTGTACCAGTAAAGGATATATTACTGCTTCCGTGATACTTTTCAAAAGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375929" ref_strand="+" ref_description="SGN-E375929 [TUS-40-A16](-)">
      <seq>caaacagaaaccccgcattttcaaattaagccgtctccggtgcttcagcccattcttcccgtatctttctccggcgagtctccgagcaatcagttcctccggctgaaatctagcggtagaaaaatatgagtataaaaccaactgttgcattgagagccattctcgttggaggaatagctgcctttgcaaaaattggtggtgccgttaaagctgcaggaggagtaaaattaggtgcagctgctgctgccatgactgctgcagcaacagcagctgtatcaggatccaaacaggaagaaaagaaggatggttctcagcagttgtcgtccaagtgatgcacacaactcatgtgttattttttttcttcaatgtaacgtctaaactgtcaaaataaaagttgtagggtggtggaatatgccaatcaaatggtttcccaggatgatctttaatagctaagatatatgggttcttacaactgcgggactcgttagttctgtactagtggaagttggagtttgttgaagtgatcactcagtgcctgtgctagatgcaatttgttttccctccagtacctgaggtatgtaactgtttttgtaccagtaaaggatatattactgcttccgtgatactttcaaaagcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="8549" stop="1522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8249" g_stop="8135" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8134" i_stop="2347" i_length="5788">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2346" g_stop="1821" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="645" r_length="530" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E375929" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8249" e_stop="8135"/>
          <exon e_start="2346" e_stop="1821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAGAAACTCCGCATTTTCAAATTAAGCCGTCTCCGGTGCTTCAGCCCATTCTTCCCGTATCTTTCTCCGGTGAGTCTCCGAGCAATCAGTTCCTCCGGCTGAAATCTAGCGGTAAGTAATACTCTCGCGGTTTCTGCCTTTTGATTTTCATAACTATAATTTTATCTGTAATATGAGAATCCCCAATATGGGTTTGGTAGCATTGATATTTTCTGGTCTCCCACTGCCAAAATGAAGCCTCAAATCTTTTGTAAGATAATTTGCAGTCTTTTGCTTACACGAAATTGTTCAGTTTTTGGTCGTATTTGTCTTGCAACCCATGATAGTTTTGACAAATATCCTCAGCAGGTCCATGTATATGAAAGTTAGGAGATTCAAGCTGTGGAGGCAATGTCTGGTTTTTTGTTTTGGGGGTGGGGGGGATTACTAGATGTTGATTCCAATATCATGGCCTCATGGGGCAAGACAAGTTTTCTTTAGAATAGTTTTATGTGTGGGCAATCGAAGGACTTTGATGTAGTACTCACTGCTCATAATGTGTCAGCAACATAACTCAAGAAGTTTGTTAAGTTGCAAATTTGGGTTGGTTTACTATACAATCTGGAATTGGAAGCTAACTAAGCTTGAGAAATTACAGCAAAACACGAAAGAAGAAATAAGAGGGTCTAAGAACTACCCTAAAAACTAGGGCTAATTCATTCTCAAAATATAAGCAAGTCCTTTCAGGGGGAAGTTATTTATAGGCTTAATACAAAGGGAAGTAGGATGGGAATGAGCAAACATGCTTCTCTAAAACAAGCCATAAGTGCCCAATGCTAACTTGAGCCTCCTTAATTCCTTGCCAGTTGCTTTAAGAGGCTTAAGAAATTCATATCGTATCAAATCTCCCTCCTTCAACTCACCCTTGTCCTCAAAAGTGTGCATTGTAATAAGCAAAGAACTCATGTGTAGATTCACCGTTTGTAAACATTTTTGAGTGTTATCAAAAGAATAAAGCTCCAAAAAGCATTAAAATGCTACTCTAGTTCTGCTGGCTTTATTTTTCAAGAGCTTTTGCAGCACCTGAAACAACTGCAACTCCTCCCATGTCAAACTTAATTAGCTTTATCAAGCACCAGGTTCAGTGTTGATGTTGTACCACCACAGTCAAAAGTCAATTTCGTTCCAACCAAGGGTAACAACTTCTTTGTGACTTCTGCACTAGTAGGCTTATAAGATACAAACAACAACATACCCAATGAAATTCCACAAATGGGGTCTGAGAAGGGTGGTGTGTAACGGAACCTTACTCTTACCTCATGAAGGTATATAGGTTGATTCCGATAGACTCTCGGCTTAAGTAAAGCATAACAAAACAAGAAGAAAATATAATACTATTAGCAAATGACACGATAATTGAAGCATAGAAAACATGTAATAATAAAATCGAAAAGTATAAGAAAGTAGGAGAAGCGGAAATACTATTACCACTGATGAGGGAAACTAGATTGACTACCTACTAATCTTTCTATCCTTATCCTTTGACATCCATATCCTCTTATCTAGGGTCATGTCCTCGATAAACTGCAAGTGTTTCAAATCCTGTCCAATCACCTCCCCTCTCCCCAGTACTTCTTTGGCCTACCTTTACCCTTTCTTGGACCCACTATAGCCAACCTCTTATATCTCCTCACTGGGCATATGGACATCTCGTCTTCACATGTCCGAACCATCAATGTTTCACTTGCCTCCTACTTTTCCCAAATATCTTCGTTCCTAATCATATCTCGTCTAGTATGCCCACACTCTCAACATCCTTATTTATGCTAATTTCATCTTGACGTGCGAGTTCTTGAACGACCAACACGTGGTCCCTTACAAAGTAGCTGGTCGAATAACCACTTTATGAAACTTATCTTTAAGACTTGGGTGGCACATTCTAATCACATAAGACACTGTATGTGAGCCTCTATTTCCTCCACCTCACTTCAATACGATGTATTACATCCTTGTCGACCTCACTATATCCTTGGCTTAAAGATCCAAGATATTTGAACTTTTCTCTCCTAGCGATGACCTTAGTATCAATCCTCACTTCCACATCCTCCTCATGGGTAATGTCACTGCACTTGCAATCTAAGTACTCAATCTTAGTCCTGCCCAACTTAAACCCTTTAAAGTCTCAGGTCTGTGTCCAACCTCTAGCTTATTGTCAATCGATACAATGCCATTTGCAAAACATTCACCCTTGGATATGTCGCAGTGCATTCATCATCAAGGCAAATAAAAATGGACTAAGCATGATCCCTGGTGTAACCCTATCATGTCTAAAAAATGCTCCGGATCTTCTCCCAAGTCCCATTATCCTCACCCGTGTCATGGATCGATCATACATGTCCTGATGTCCTTAATCTCCCTAATGTAGGCTTCATGTACTCCTTTAGCCTCCAAACATCTCCATAAAACTCTTCTAATGACTTTGTCGTATGTTTTTCGAACACCGTATGTAAGTCCCTCTTTTTCTCAAGATACTGCTCCTCCAATCTACTCACGAGATGATTGACTTCTATAGTTGAACGCCGTGGCATGAATTCAAATTTGTTCTTGGTGCTGCCCCAGAACCATTAGGTACACCGTACACATGGAGAGCCCTTGGAAAGGTAATATTGTAGACACCAATATCATTGGATCAATCAGTACAAGTTGGAACTGTTCATGCTCAAATTCATGTGACCAGCAGTTAACCCCACACTGTTGTTCAAATTATTGAACCCAAGCATTTGGGTTGTCATGTTCCATTTGGTCCTGTGCAAACTTAGTACTCAATCTCTATCCAACATGAAGCGCACGTTTGACAGTTTGGGCCTCATTCCAGTACTCTTCTAAAGAAATAAAATTGCTAGATAGGTCATACAATTCCATCATTCAGGGAACAGTCTTCACACCAACAAGAGTATGATCCATTGCAATCTCAGTGTTAGAACTGTTATGCCCCTTCTTTTGTTGTTGTCTCAGTGTCCACCTTGGAGTCATAGCGAAACTCTCTATCAGTTGACAGTACCTCAGATGGTATGCACCAAGTGATAGCAATTCCTGTTGCAACATATGACCACTGCAGAAGTTTGTCCCTCAAATTCCCTTTACTGGTGCACACTGCAAATGTTGTAGCTGTACCGAGGAAGCAAATTTGTCCGTAAAACATTCTTTCTAACTCACATTGCCATAAGCAACACGAGAGCTAAATAATATCCACTAAACAGAGGAGTCGATGTGAACATGCTTATACTTTACCAGTTCTTCTTCGACTTCAAGATAGCCATCTTGATCCATTTTACACCAGAATTATGCCAACTAACAAAGCTACACCGGAGATTGCCTTATCTGGACGAACCCACAGGAATCTTGCATTATCTCAAAACAATGTACATCTTCCTTGTTAGTTCCTTGTTGTGCATCACCAGAGATCATTGAATACCAGAACTGCTAGTTCTACATTAACAGTCTCTTCCTCAACATCTGTTGCTTCGTCTTCCTCATCTACAAGGGTACCCTGTGAACCATCTAACGATGAAGCAGGTTCCACTTCTTCATGATTTATTGCATCTATTTGCATGGTTGTAGCTTCAACAGTTGAAAGATCTGCCTCTACCACCATCTGCGTGTTGTAGCTTTTTCTTCCATGTGCTGCTGAGCATTTCTGGGCTTGGCTAAACTCATATCACCATACATCCATCTGATCATTCGTATTTTATGGAAATTGCTGGGGTGCCGGAAGCACAACACTCGCTCATGTAACATTGCTAGTCTTACGACTATTTTGTAGAACTTGTTTTGCTTGAAGGATGAAACACATAATTGAGGCTGCAACAGTTCTGCCCCATTTGGGCCTTTTAATTCCAATACTCTATAATTGATTTTTCGGAAAAATTAAGGGCATTTTAATGAAGTCAAGGGCACATGAGGCTGATTTACCGAAGAGGCACGGCCAAGTCCAAGCCGAGCACAACAGTCATGGTCATGCCATACAAATGGTTATAGAAAATCATCATCAAAATTTGAATTGATGAATATGAATGAGAAGTCTTAATGGATTAATGGTGTGGATACAGTGAAAGACCGTAAAATTCATGTAGCTTGGAGGGCTATTGTTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAAACCGTAAAATTCATGTAGCTTGGAGAGCTATTATTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAATATGTTTTAGCAGATGACATGTGAGATACAATGATCAAATAGCATCATGTGATGTTCTTGTTTTCATGTTTTATTAGGTTTAAATGATTAGATAGGTAATTGAAAACTGTGTGTTCTGATGAGAAAAATACAAGTTGAAGCCAAAGTTTAGGTACTTGCTTGTGATATCAGCTTGTGCTGTAGACAATGTGAATTGTTAAACATGAAATTGTATATGAATTTGTTACAGGAGGAGGTTCTGAAACCTATTTGTGTCTGATAACTTTACTAATATTTAGATATGGTTATAATAGTTTTTTAAAAAGGTAAAGTGCCTTTTCCTGTATTGCAGTCTAAGGATACGGGTGCGGATTCCTTAATATCTGGGTAATGAAAGAAATCTAGTTTATTTAACGAGGCTTTTTCAGTATATTGGTAGTTTTAGAAGTCTAATGATCCGTGAGACCTACTGTATGATGAATAAGTGGTACTATAGGTTCATATGTTATCACAAGAATGCGAGAAGGACAATTAGGATTTCTTTGAAGTACATGACAGTTGCTGGAATGAAGGTTAATTATATTTCAAGTGTGCCAAGTTTTCTTCCTTTTGTCTTGATATGGAAGCTGGTGGTTCTGTAAGGAGGGTTCTAATGAATGAACAATGTGTAACAGTATAATTTCTGGCCATGGAATGCATGGATTTGGTGGAAGATCAGAGGTACTTGGGCCTTTTAGCCTGTAGTCAGTGCAGGGTTGTTGATAGAGCATTCTTCTGGTATATCTTCATGTCTGTGCCATGTTCTTGCAGCATGCTAGTGACATGGTGCAAGACATGTGTCAACAAGAACCAGAACCTATTTATTTTGGGTAGTACCGAACAATTGGAATCACAAGAATAGAGAAGTTGCTGTAGAGGCGCTGCTCAATATCTCATGGTTGACTCTAAGATTGCGGCGAATCTTTATGCTGCTTTTTCGTTTTTATGGATGTGAGGATCCTGCAAATGTGATTGCTTCAAGCACTGACACAACATATTTGGAAGAAAAATTCCATCCCATAGTTTGAGTTAGGTGGAGAAACGGTTCACATGTTATTGCTATAGAGCTGGTCTGAATTTTATATTGGACGCTTAATGCTTAATATCTTGGTTTTCTTTTACATAAGAATGTGCTGCTTTCAGTTTGCAGAAGAAGAATCTGTAGGGATTGCCATGAATAACTTTACCATCTATAGATGAGTACTTTTTGCCTTTGGTTCTTTCTAGTGCTGGGTTATTGGGAATTATTTCCGAAACTCCTGTAATTTGGAAGCCATTTGTAGGACTTATTTGAAACTGCTACACTCTATTCCAGCCTTCGTGTTGCAACGTAGCCGTTTAGGAGGTCGTTGCAGCAGTTAATGCATTTTTTTGTCTGTTATAGGAATCAGGAAATGAATTAACTGATCTTTGTGGTGTGTAGTTTCTGAAAATAGCATTAAAGAGAATTTTTCTAGTTCCTTATCTGTTATATTCTATTTTTACTTTAGGAATTGTAACTTAGGCTCTTTATCATCTCACGGAAGCTTCTGCATTTCAAAGAAAATTGTGTTAATATCTTTCCTTTTATATGCCAATCTGATATTTGTGTTTAAGTGATCTGGGGCTTTGCAACTCTGATATTTTTTCTCTAAGGTAGAAAAATATGAGTATAAAACCAACTGTTGCATTGAGAGCCATTCTCGTTGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCCGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCGTCCAAGTGATGCACACAACTCATGTGTTATTTTTTTTTCTTCAATGTAACGTCTGAACTGTCAAAATAAAAGTTGTAGGGTGGTGGAATATGCCAGTCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTTCTTACAACTGCGGGACTCGTTAGTTCTGTACTAGTGGAAGTTGGAGTTTGTTGAAGTGATCACTCAGTGCCTGTGCTAGATGCAATTTGTTTTCCCTCCAGTACCTGAGGTATGTAACTG----T-TACCAGTAAAGGATATATTACTGCTTCCGTGATACTTTCAAAAGCAAAATATAT</genome_strand>
        <mrna_strand>CAAACAGAAACCCCGCATTTTCAAATTAAGCCGTCTCCGGTGCTTCAGCCCATTCTTCCCGTATCTTTCTCCGGCGAGTCTCCGAGCAATCAGTTCCTCCGGCTGAAATCTAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAAATATGAGTATAAAACCAACTGTTGCATTGAGAGCCATTCTCGTTGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCCGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCGTCCAAGTGATGCACACAACTCATGTGTTA-TTTTTTTTCTTCAATGTAACGTCTAAACTGTCAAAATAAAAGTTGTAGGGTGGTGGAATATGCCAATCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTTCTTACAACTGCGGGACTCGTTAGTTCTGTACTAGTGGAAGTTGGAGTTTGTTGAAGTGATCACTCAGTGCCTGTGCTAGATGCAATTTGTTTTCCCTCCAGTACCTGAGGTATGTAACTGTTTTTGTACCAGTAAAGGATATATTACTGCTTCCGTGATACTTTCAAAAGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319741" ref_strand="+" ref_description="SGN-E319741 [cTOB-12-E2]">
      <seq>aaacagaaaccccgcattttcaaattaagccgtctccggtgcttcagcccattcttcccgtatctttctccggcgagtctccgagcaatcagttcctccggctgaaatctagcggtagaaaaatatgagtataaaaccaactgttgcattgagagccattctcgttggaggaatagctgcctttgcaaaaattggtggtgccgttaaagctgcaggaggagtaaaattaggtgcagctgctgctgccatgactgctgcagcaacagcagctgtatcaggatccaaacaggaagaaaagaaggatggttctcagcagttgtcgtccaagtgatgcacacaactcatgtgttattttttttcttcaatgtaacgtctaaactgtcaaaataaaagttgtagggtggtggaatatgccaatcaaatggtttcccaggatgatctttaatagctaagatatatgggttcttacaactgcgggactcgttagttctgtactagtggaagttggagtttgttgaagtgatcactcagtgcctgtgctagatgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="8548" stop="1610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8248" g_stop="8135" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8134" i_stop="2347" i_length="5788">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2346" g_stop="1910" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="550" r_length="436" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E319741" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8248" e_stop="8135"/>
          <exon e_start="2346" e_stop="1910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAAACTCCGCATTTTCAAATTAAGCCGTCTCCGGTGCTTCAGCCCATTCTTCCCGTATCTTTCTCCGGTGAGTCTCCGAGCAATCAGTTCCTCCGGCTGAAATCTAGCGGTAAGTAATACTCTCGCGGTTTCTGCCTTTTGATTTTCATAACTATAATTTTATCTGTAATATGAGAATCCCCAATATGGGTTTGGTAGCATTGATATTTTCTGGTCTCCCACTGCCAAAATGAAGCCTCAAATCTTTTGTAAGATAATTTGCAGTCTTTTGCTTACACGAAATTGTTCAGTTTTTGGTCGTATTTGTCTTGCAACCCATGATAGTTTTGACAAATATCCTCAGCAGGTCCATGTATATGAAAGTTAGGAGATTCAAGCTGTGGAGGCAATGTCTGGTTTTTTGTTTTGGGGGTGGGGGGGATTACTAGATGTTGATTCCAATATCATGGCCTCATGGGGCAAGACAAGTTTTCTTTAGAATAGTTTTATGTGTGGGCAATCGAAGGACTTTGATGTAGTACTCACTGCTCATAATGTGTCAGCAACATAACTCAAGAAGTTTGTTAAGTTGCAAATTTGGGTTGGTTTACTATACAATCTGGAATTGGAAGCTAACTAAGCTTGAGAAATTACAGCAAAACACGAAAGAAGAAATAAGAGGGTCTAAGAACTACCCTAAAAACTAGGGCTAATTCATTCTCAAAATATAAGCAAGTCCTTTCAGGGGGAAGTTATTTATAGGCTTAATACAAAGGGAAGTAGGATGGGAATGAGCAAACATGCTTCTCTAAAACAAGCCATAAGTGCCCAATGCTAACTTGAGCCTCCTTAATTCCTTGCCAGTTGCTTTAAGAGGCTTAAGAAATTCATATCGTATCAAATCTCCCTCCTTCAACTCACCCTTGTCCTCAAAAGTGTGCATTGTAATAAGCAAAGAACTCATGTGTAGATTCACCGTTTGTAAACATTTTTGAGTGTTATCAAAAGAATAAAGCTCCAAAAAGCATTAAAATGCTACTCTAGTTCTGCTGGCTTTATTTTTCAAGAGCTTTTGCAGCACCTGAAACAACTGCAACTCCTCCCATGTCAAACTTAATTAGCTTTATCAAGCACCAGGTTCAGTGTTGATGTTGTACCACCACAGTCAAAAGTCAATTTCGTTCCAACCAAGGGTAACAACTTCTTTGTGACTTCTGCACTAGTAGGCTTATAAGATACAAACAACAACATACCCAATGAAATTCCACAAATGGGGTCTGAGAAGGGTGGTGTGTAACGGAACCTTACTCTTACCTCATGAAGGTATATAGGTTGATTCCGATAGACTCTCGGCTTAAGTAAAGCATAACAAAACAAGAAGAAAATATAATACTATTAGCAAATGACACGATAATTGAAGCATAGAAAACATGTAATAATAAAATCGAAAAGTATAAGAAAGTAGGAGAAGCGGAAATACTATTACCACTGATGAGGGAAACTAGATTGACTACCTACTAATCTTTCTATCCTTATCCTTTGACATCCATATCCTCTTATCTAGGGTCATGTCCTCGATAAACTGCAAGTGTTTCAAATCCTGTCCAATCACCTCCCCTCTCCCCAGTACTTCTTTGGCCTACCTTTACCCTTTCTTGGACCCACTATAGCCAACCTCTTATATCTCCTCACTGGGCATATGGACATCTCGTCTTCACATGTCCGAACCATCAATGTTTCACTTGCCTCCTACTTTTCCCAAATATCTTCGTTCCTAATCATATCTCGTCTAGTATGCCCACACTCTCAACATCCTTATTTATGCTAATTTCATCTTGACGTGCGAGTTCTTGAACGACCAACACGTGGTCCCTTACAAAGTAGCTGGTCGAATAACCACTTTATGAAACTTATCTTTAAGACTTGGGTGGCACATTCTAATCACATAAGACACTGTATGTGAGCCTCTATTTCCTCCACCTCACTTCAATACGATGTATTACATCCTTGTCGACCTCACTATATCCTTGGCTTAAAGATCCAAGATATTTGAACTTTTCTCTCCTAGCGATGACCTTAGTATCAATCCTCACTTCCACATCCTCCTCATGGGTAATGTCACTGCACTTGCAATCTAAGTACTCAATCTTAGTCCTGCCCAACTTAAACCCTTTAAAGTCTCAGGTCTGTGTCCAACCTCTAGCTTATTGTCAATCGATACAATGCCATTTGCAAAACATTCACCCTTGGATATGTCGCAGTGCATTCATCATCAAGGCAAATAAAAATGGACTAAGCATGATCCCTGGTGTAACCCTATCATGTCTAAAAAATGCTCCGGATCTTCTCCCAAGTCCCATTATCCTCACCCGTGTCATGGATCGATCATACATGTCCTGATGTCCTTAATCTCCCTAATGTAGGCTTCATGTACTCCTTTAGCCTCCAAACATCTCCATAAAACTCTTCTAATGACTTTGTCGTATGTTTTTCGAACACCGTATGTAAGTCCCTCTTTTTCTCAAGATACTGCTCCTCCAATCTACTCACGAGATGATTGACTTCTATAGTTGAACGCCGTGGCATGAATTCAAATTTGTTCTTGGTGCTGCCCCAGAACCATTAGGTACACCGTACACATGGAGAGCCCTTGGAAAGGTAATATTGTAGACACCAATATCATTGGATCAATCAGTACAAGTTGGAACTGTTCATGCTCAAATTCATGTGACCAGCAGTTAACCCCACACTGTTGTTCAAATTATTGAACCCAAGCATTTGGGTTGTCATGTTCCATTTGGTCCTGTGCAAACTTAGTACTCAATCTCTATCCAACATGAAGCGCACGTTTGACAGTTTGGGCCTCATTCCAGTACTCTTCTAAAGAAATAAAATTGCTAGATAGGTCATACAATTCCATCATTCAGGGAACAGTCTTCACACCAACAAGAGTATGATCCATTGCAATCTCAGTGTTAGAACTGTTATGCCCCTTCTTTTGTTGTTGTCTCAGTGTCCACCTTGGAGTCATAGCGAAACTCTCTATCAGTTGACAGTACCTCAGATGGTATGCACCAAGTGATAGCAATTCCTGTTGCAACATATGACCACTGCAGAAGTTTGTCCCTCAAATTCCCTTTACTGGTGCACACTGCAAATGTTGTAGCTGTACCGAGGAAGCAAATTTGTCCGTAAAACATTCTTTCTAACTCACATTGCCATAAGCAACACGAGAGCTAAATAATATCCACTAAACAGAGGAGTCGATGTGAACATGCTTATACTTTACCAGTTCTTCTTCGACTTCAAGATAGCCATCTTGATCCATTTTACACCAGAATTATGCCAACTAACAAAGCTACACCGGAGATTGCCTTATCTGGACGAACCCACAGGAATCTTGCATTATCTCAAAACAATGTACATCTTCCTTGTTAGTTCCTTGTTGTGCATCACCAGAGATCATTGAATACCAGAACTGCTAGTTCTACATTAACAGTCTCTTCCTCAACATCTGTTGCTTCGTCTTCCTCATCTACAAGGGTACCCTGTGAACCATCTAACGATGAAGCAGGTTCCACTTCTTCATGATTTATTGCATCTATTTGCATGGTTGTAGCTTCAACAGTTGAAAGATCTGCCTCTACCACCATCTGCGTGTTGTAGCTTTTTCTTCCATGTGCTGCTGAGCATTTCTGGGCTTGGCTAAACTCATATCACCATACATCCATCTGATCATTCGTATTTTATGGAAATTGCTGGGGTGCCGGAAGCACAACACTCGCTCATGTAACATTGCTAGTCTTACGACTATTTTGTAGAACTTGTTTTGCTTGAAGGATGAAACACATAATTGAGGCTGCAACAGTTCTGCCCCATTTGGGCCTTTTAATTCCAATACTCTATAATTGATTTTTCGGAAAAATTAAGGGCATTTTAATGAAGTCAAGGGCACATGAGGCTGATTTACCGAAGAGGCACGGCCAAGTCCAAGCCGAGCACAACAGTCATGGTCATGCCATACAAATGGTTATAGAAAATCATCATCAAAATTTGAATTGATGAATATGAATGAGAAGTCTTAATGGATTAATGGTGTGGATACAGTGAAAGACCGTAAAATTCATGTAGCTTGGAGGGCTATTGTTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAAACCGTAAAATTCATGTAGCTTGGAGAGCTATTATTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAATATGTTTTAGCAGATGACATGTGAGATACAATGATCAAATAGCATCATGTGATGTTCTTGTTTTCATGTTTTATTAGGTTTAAATGATTAGATAGGTAATTGAAAACTGTGTGTTCTGATGAGAAAAATACAAGTTGAAGCCAAAGTTTAGGTACTTGCTTGTGATATCAGCTTGTGCTGTAGACAATGTGAATTGTTAAACATGAAATTGTATATGAATTTGTTACAGGAGGAGGTTCTGAAACCTATTTGTGTCTGATAACTTTACTAATATTTAGATATGGTTATAATAGTTTTTTAAAAAGGTAAAGTGCCTTTTCCTGTATTGCAGTCTAAGGATACGGGTGCGGATTCCTTAATATCTGGGTAATGAAAGAAATCTAGTTTATTTAACGAGGCTTTTTCAGTATATTGGTAGTTTTAGAAGTCTAATGATCCGTGAGACCTACTGTATGATGAATAAGTGGTACTATAGGTTCATATGTTATCACAAGAATGCGAGAAGGACAATTAGGATTTCTTTGAAGTACATGACAGTTGCTGGAATGAAGGTTAATTATATTTCAAGTGTGCCAAGTTTTCTTCCTTTTGTCTTGATATGGAAGCTGGTGGTTCTGTAAGGAGGGTTCTAATGAATGAACAATGTGTAACAGTATAATTTCTGGCCATGGAATGCATGGATTTGGTGGAAGATCAGAGGTACTTGGGCCTTTTAGCCTGTAGTCAGTGCAGGGTTGTTGATAGAGCATTCTTCTGGTATATCTTCATGTCTGTGCCATGTTCTTGCAGCATGCTAGTGACATGGTGCAAGACATGTGTCAACAAGAACCAGAACCTATTTATTTTGGGTAGTACCGAACAATTGGAATCACAAGAATAGAGAAGTTGCTGTAGAGGCGCTGCTCAATATCTCATGGTTGACTCTAAGATTGCGGCGAATCTTTATGCTGCTTTTTCGTTTTTATGGATGTGAGGATCCTGCAAATGTGATTGCTTCAAGCACTGACACAACATATTTGGAAGAAAAATTCCATCCCATAGTTTGAGTTAGGTGGAGAAACGGTTCACATGTTATTGCTATAGAGCTGGTCTGAATTTTATATTGGACGCTTAATGCTTAATATCTTGGTTTTCTTTTACATAAGAATGTGCTGCTTTCAGTTTGCAGAAGAAGAATCTGTAGGGATTGCCATGAATAACTTTACCATCTATAGATGAGTACTTTTTGCCTTTGGTTCTTTCTAGTGCTGGGTTATTGGGAATTATTTCCGAAACTCCTGTAATTTGGAAGCCATTTGTAGGACTTATTTGAAACTGCTACACTCTATTCCAGCCTTCGTGTTGCAACGTAGCCGTTTAGGAGGTCGTTGCAGCAGTTAATGCATTTTTTTGTCTGTTATAGGAATCAGGAAATGAATTAACTGATCTTTGTGGTGTGTAGTTTCTGAAAATAGCATTAAAGAGAATTTTTCTAGTTCCTTATCTGTTATATTCTATTTTTACTTTAGGAATTGTAACTTAGGCTCTTTATCATCTCACGGAAGCTTCTGCATTTCAAAGAAAATTGTGTTAATATCTTTCCTTTTATATGCCAATCTGATATTTGTGTTTAAGTGATCTGGGGCTTTGCAACTCTGATATTTTTTCTCTAAGGTAGAAAAATATGAGTATAAAACCAACTGTTGCATTGAGAGCCATTCTCGTTGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCCGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCGTCCAAGTGATGCACACAACTCATGTGTTATTTTTTTTTCTTCAATGTAACGTCTGAACTGTCAAAATAAAAGTTGTAGGGTGGTGGAATATGCCAGTCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTTCTTACAACTGCGGGACTCGTTAGTTCTGTACTAGTGGAAGTTGGAGTTTGTTGAAGTGATCACTCAGTGCCTGTGCTAGATGCAAT</genome_strand>
        <mrna_strand>AAACAGAAACCCCGCATTTTCAAATTAAGCCGTCTCCGGTGCTTCAGCCCATTCTTCCCGTATCTTTCTCCGGCGAGTCTCCGAGCAATCAGTTCCTCCGGCTGAAATCTAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAAATATGAGTATAAAACCAACTGTTGCATTGAGAGCCATTCTCGTTGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCCGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCGTCCAAGTGATGCACACAACTCATGTGTTA-TTTTTTTTCTTCAATGTAACGTCTAAACTGTCAAAATAAAAGTTGTAGGGTGGTGGAATATGCCAATCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTTCTTACAACTGCGGGACTCGTTAGTTCTGTACTAGTGGAAGTTGGAGTTTGTTGAAGTGATCACTCAGTGCCTGTGCTAGATGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319118" ref_strand="+" ref_description="SGN-E319118 [cTOB-16-E21]">
      <seq>acagaaaccccgcattttcaaattaagccgtctccggtgcttcagcccattcttcccgtatctttctccggcgagtctccgagcaatcagttcctccggctgaaatctagcggtagaaaaatatgagtataaaaccaactgttgcattgagagccattctcgttggaggaatagctgcctttgcaaaaattggtggtgccgttaaagctgcaggaggagtaaaattaggtgcagctgctgctgccatgactgctgcagcaacagcagctgtatcaggatccaaacaggaagaaaagaaggatggttctcagcagttgtcgtccaagtgatgcacacaactcatgtgttattttttttcttcaatgtaacgtctaaactgtcaaaataaaagttgtagggtggtggaatatgccaatcaaatggtttcccaggatgatctttaatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="8546" stop="1711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8246" g_stop="8135" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8134" i_stop="2347" i_length="5788">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2346" g_stop="2011" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="447" r_length="335" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E319118" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8246" e_stop="8135"/>
          <exon e_start="2346" e_stop="2011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAAACTCCGCATTTTCAAATTAAGCCGTCTCCGGTGCTTCAGCCCATTCTTCCCGTATCTTTCTCCGGTGAGTCTCCGAGCAATCAGTTCCTCCGGCTGAAATCTAGCGGTAAGTAATACTCTCGCGGTTTCTGCCTTTTGATTTTCATAACTATAATTTTATCTGTAATATGAGAATCCCCAATATGGGTTTGGTAGCATTGATATTTTCTGGTCTCCCACTGCCAAAATGAAGCCTCAAATCTTTTGTAAGATAATTTGCAGTCTTTTGCTTACACGAAATTGTTCAGTTTTTGGTCGTATTTGTCTTGCAACCCATGATAGTTTTGACAAATATCCTCAGCAGGTCCATGTATATGAAAGTTAGGAGATTCAAGCTGTGGAGGCAATGTCTGGTTTTTTGTTTTGGGGGTGGGGGGGATTACTAGATGTTGATTCCAATATCATGGCCTCATGGGGCAAGACAAGTTTTCTTTAGAATAGTTTTATGTGTGGGCAATCGAAGGACTTTGATGTAGTACTCACTGCTCATAATGTGTCAGCAACATAACTCAAGAAGTTTGTTAAGTTGCAAATTTGGGTTGGTTTACTATACAATCTGGAATTGGAAGCTAACTAAGCTTGAGAAATTACAGCAAAACACGAAAGAAGAAATAAGAGGGTCTAAGAACTACCCTAAAAACTAGGGCTAATTCATTCTCAAAATATAAGCAAGTCCTTTCAGGGGGAAGTTATTTATAGGCTTAATACAAAGGGAAGTAGGATGGGAATGAGCAAACATGCTTCTCTAAAACAAGCCATAAGTGCCCAATGCTAACTTGAGCCTCCTTAATTCCTTGCCAGTTGCTTTAAGAGGCTTAAGAAATTCATATCGTATCAAATCTCCCTCCTTCAACTCACCCTTGTCCTCAAAAGTGTGCATTGTAATAAGCAAAGAACTCATGTGTAGATTCACCGTTTGTAAACATTTTTGAGTGTTATCAAAAGAATAAAGCTCCAAAAAGCATTAAAATGCTACTCTAGTTCTGCTGGCTTTATTTTTCAAGAGCTTTTGCAGCACCTGAAACAACTGCAACTCCTCCCATGTCAAACTTAATTAGCTTTATCAAGCACCAGGTTCAGTGTTGATGTTGTACCACCACAGTCAAAAGTCAATTTCGTTCCAACCAAGGGTAACAACTTCTTTGTGACTTCTGCACTAGTAGGCTTATAAGATACAAACAACAACATACCCAATGAAATTCCACAAATGGGGTCTGAGAAGGGTGGTGTGTAACGGAACCTTACTCTTACCTCATGAAGGTATATAGGTTGATTCCGATAGACTCTCGGCTTAAGTAAAGCATAACAAAACAAGAAGAAAATATAATACTATTAGCAAATGACACGATAATTGAAGCATAGAAAACATGTAATAATAAAATCGAAAAGTATAAGAAAGTAGGAGAAGCGGAAATACTATTACCACTGATGAGGGAAACTAGATTGACTACCTACTAATCTTTCTATCCTTATCCTTTGACATCCATATCCTCTTATCTAGGGTCATGTCCTCGATAAACTGCAAGTGTTTCAAATCCTGTCCAATCACCTCCCCTCTCCCCAGTACTTCTTTGGCCTACCTTTACCCTTTCTTGGACCCACTATAGCCAACCTCTTATATCTCCTCACTGGGCATATGGACATCTCGTCTTCACATGTCCGAACCATCAATGTTTCACTTGCCTCCTACTTTTCCCAAATATCTTCGTTCCTAATCATATCTCGTCTAGTATGCCCACACTCTCAACATCCTTATTTATGCTAATTTCATCTTGACGTGCGAGTTCTTGAACGACCAACACGTGGTCCCTTACAAAGTAGCTGGTCGAATAACCACTTTATGAAACTTATCTTTAAGACTTGGGTGGCACATTCTAATCACATAAGACACTGTATGTGAGCCTCTATTTCCTCCACCTCACTTCAATACGATGTATTACATCCTTGTCGACCTCACTATATCCTTGGCTTAAAGATCCAAGATATTTGAACTTTTCTCTCCTAGCGATGACCTTAGTATCAATCCTCACTTCCACATCCTCCTCATGGGTAATGTCACTGCACTTGCAATCTAAGTACTCAATCTTAGTCCTGCCCAACTTAAACCCTTTAAAGTCTCAGGTCTGTGTCCAACCTCTAGCTTATTGTCAATCGATACAATGCCATTTGCAAAACATTCACCCTTGGATATGTCGCAGTGCATTCATCATCAAGGCAAATAAAAATGGACTAAGCATGATCCCTGGTGTAACCCTATCATGTCTAAAAAATGCTCCGGATCTTCTCCCAAGTCCCATTATCCTCACCCGTGTCATGGATCGATCATACATGTCCTGATGTCCTTAATCTCCCTAATGTAGGCTTCATGTACTCCTTTAGCCTCCAAACATCTCCATAAAACTCTTCTAATGACTTTGTCGTATGTTTTTCGAACACCGTATGTAAGTCCCTCTTTTTCTCAAGATACTGCTCCTCCAATCTACTCACGAGATGATTGACTTCTATAGTTGAACGCCGTGGCATGAATTCAAATTTGTTCTTGGTGCTGCCCCAGAACCATTAGGTACACCGTACACATGGAGAGCCCTTGGAAAGGTAATATTGTAGACACCAATATCATTGGATCAATCAGTACAAGTTGGAACTGTTCATGCTCAAATTCATGTGACCAGCAGTTAACCCCACACTGTTGTTCAAATTATTGAACCCAAGCATTTGGGTTGTCATGTTCCATTTGGTCCTGTGCAAACTTAGTACTCAATCTCTATCCAACATGAAGCGCACGTTTGACAGTTTGGGCCTCATTCCAGTACTCTTCTAAAGAAATAAAATTGCTAGATAGGTCATACAATTCCATCATTCAGGGAACAGTCTTCACACCAACAAGAGTATGATCCATTGCAATCTCAGTGTTAGAACTGTTATGCCCCTTCTTTTGTTGTTGTCTCAGTGTCCACCTTGGAGTCATAGCGAAACTCTCTATCAGTTGACAGTACCTCAGATGGTATGCACCAAGTGATAGCAATTCCTGTTGCAACATATGACCACTGCAGAAGTTTGTCCCTCAAATTCCCTTTACTGGTGCACACTGCAAATGTTGTAGCTGTACCGAGGAAGCAAATTTGTCCGTAAAACATTCTTTCTAACTCACATTGCCATAAGCAACACGAGAGCTAAATAATATCCACTAAACAGAGGAGTCGATGTGAACATGCTTATACTTTACCAGTTCTTCTTCGACTTCAAGATAGCCATCTTGATCCATTTTACACCAGAATTATGCCAACTAACAAAGCTACACCGGAGATTGCCTTATCTGGACGAACCCACAGGAATCTTGCATTATCTCAAAACAATGTACATCTTCCTTGTTAGTTCCTTGTTGTGCATCACCAGAGATCATTGAATACCAGAACTGCTAGTTCTACATTAACAGTCTCTTCCTCAACATCTGTTGCTTCGTCTTCCTCATCTACAAGGGTACCCTGTGAACCATCTAACGATGAAGCAGGTTCCACTTCTTCATGATTTATTGCATCTATTTGCATGGTTGTAGCTTCAACAGTTGAAAGATCTGCCTCTACCACCATCTGCGTGTTGTAGCTTTTTCTTCCATGTGCTGCTGAGCATTTCTGGGCTTGGCTAAACTCATATCACCATACATCCATCTGATCATTCGTATTTTATGGAAATTGCTGGGGTGCCGGAAGCACAACACTCGCTCATGTAACATTGCTAGTCTTACGACTATTTTGTAGAACTTGTTTTGCTTGAAGGATGAAACACATAATTGAGGCTGCAACAGTTCTGCCCCATTTGGGCCTTTTAATTCCAATACTCTATAATTGATTTTTCGGAAAAATTAAGGGCATTTTAATGAAGTCAAGGGCACATGAGGCTGATTTACCGAAGAGGCACGGCCAAGTCCAAGCCGAGCACAACAGTCATGGTCATGCCATACAAATGGTTATAGAAAATCATCATCAAAATTTGAATTGATGAATATGAATGAGAAGTCTTAATGGATTAATGGTGTGGATACAGTGAAAGACCGTAAAATTCATGTAGCTTGGAGGGCTATTGTTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAAACCGTAAAATTCATGTAGCTTGGAGAGCTATTATTTCATGTATTGTGCAGAATTTTGACTGCAATTCTGCTTACAATATGTTTTAGCAGATGACATGTGAGATACAATGATCAAATAGCATCATGTGATGTTCTTGTTTTCATGTTTTATTAGGTTTAAATGATTAGATAGGTAATTGAAAACTGTGTGTTCTGATGAGAAAAATACAAGTTGAAGCCAAAGTTTAGGTACTTGCTTGTGATATCAGCTTGTGCTGTAGACAATGTGAATTGTTAAACATGAAATTGTATATGAATTTGTTACAGGAGGAGGTTCTGAAACCTATTTGTGTCTGATAACTTTACTAATATTTAGATATGGTTATAATAGTTTTTTAAAAAGGTAAAGTGCCTTTTCCTGTATTGCAGTCTAAGGATACGGGTGCGGATTCCTTAATATCTGGGTAATGAAAGAAATCTAGTTTATTTAACGAGGCTTTTTCAGTATATTGGTAGTTTTAGAAGTCTAATGATCCGTGAGACCTACTGTATGATGAATAAGTGGTACTATAGGTTCATATGTTATCACAAGAATGCGAGAAGGACAATTAGGATTTCTTTGAAGTACATGACAGTTGCTGGAATGAAGGTTAATTATATTTCAAGTGTGCCAAGTTTTCTTCCTTTTGTCTTGATATGGAAGCTGGTGGTTCTGTAAGGAGGGTTCTAATGAATGAACAATGTGTAACAGTATAATTTCTGGCCATGGAATGCATGGATTTGGTGGAAGATCAGAGGTACTTGGGCCTTTTAGCCTGTAGTCAGTGCAGGGTTGTTGATAGAGCATTCTTCTGGTATATCTTCATGTCTGTGCCATGTTCTTGCAGCATGCTAGTGACATGGTGCAAGACATGTGTCAACAAGAACCAGAACCTATTTATTTTGGGTAGTACCGAACAATTGGAATCACAAGAATAGAGAAGTTGCTGTAGAGGCGCTGCTCAATATCTCATGGTTGACTCTAAGATTGCGGCGAATCTTTATGCTGCTTTTTCGTTTTTATGGATGTGAGGATCCTGCAAATGTGATTGCTTCAAGCACTGACACAACATATTTGGAAGAAAAATTCCATCCCATAGTTTGAGTTAGGTGGAGAAACGGTTCACATGTTATTGCTATAGAGCTGGTCTGAATTTTATATTGGACGCTTAATGCTTAATATCTTGGTTTTCTTTTACATAAGAATGTGCTGCTTTCAGTTTGCAGAAGAAGAATCTGTAGGGATTGCCATGAATAACTTTACCATCTATAGATGAGTACTTTTTGCCTTTGGTTCTTTCTAGTGCTGGGTTATTGGGAATTATTTCCGAAACTCCTGTAATTTGGAAGCCATTTGTAGGACTTATTTGAAACTGCTACACTCTATTCCAGCCTTCGTGTTGCAACGTAGCCGTTTAGGAGGTCGTTGCAGCAGTTAATGCATTTTTTTGTCTGTTATAGGAATCAGGAAATGAATTAACTGATCTTTGTGGTGTGTAGTTTCTGAAAATAGCATTAAAGAGAATTTTTCTAGTTCCTTATCTGTTATATTCTATTTTTACTTTAGGAATTGTAACTTAGGCTCTTTATCATCTCACGGAAGCTTCTGCATTTCAAAGAAAATTGTGTTAATATCTTTCCTTTTATATGCCAATCTGATATTTGTGTTTAAGTGATCTGGGGCTTTGCAACTCTGATATTTTTTCTCTAAGGTAGAAAAATATGAGTATAAAACCAACTGTTGCATTGAGAGCCATTCTCGTTGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCCGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCGTCCAAGTGATGCACACAACTCATGTGTTATTTTTTTTTCTTCAATGTAACGTCTGAACTGTCAAAATAAAAGTTGTAGGGTGGTGGAATATGCCAGTCAAATGGTTTCCCAGGATGATCTTTAATAGC</genome_strand>
        <mrna_strand>ACAGAAACCCCGCATTTTCAAATTAAGCCGTCTCCGGTGCTTCAGCCCATTCTTCCCGTATCTTTCTCCGGCGAGTCTCCGAGCAATCAGTTCCTCCGGCTGAAATCTAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAAATATGAGTATAAAACCAACTGTTGCATTGAGAGCCATTCTCGTTGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCCGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCGTCCAAGTGATGCACACAACTCATGTGTTA-TTTTTTTTCTTCAATGTAACGTCTAAACTGTCAAAATAAAAGTTGTAGGGTGGTGGAATATGCCAATCAAATGGTTTCCCAGGATGATCTTTAATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724908" ref_strand="+" ref_description="SGN-E724908 [FC25CA08]">
      <seq>ggcgattggcggccaatcggccgaattgctcttcttttttttcttcttcgatttcgttttttaattttgttgatttgatatatagttttttttttgaatctgtgtttattgattgttgttctgaattttattttttttggatcttagggttttttaggtaaattgagtatctgggtataactggaaatttgaaattgttggaaggtttttgaaaaaatggaaccgtcttcgtcttccccggagtttgattacttgtttaagctgttgttgattggaaattcaggagtagggaaaagtagtttgttgctcagtttcacttctgatgcctttgaggatctttctccaactattgggggggacttcaaggtaaaacatgtcaccctcggggggaaaaagttgaaccttgctatatgggatacagctggacaggaaaaatttaggactttaacgagttcatactaccgaggagctcaaggaataatcatggtttatgatgtaacaaggcgagacacatttactaatctctctgatatatgggccaaaaaaatcgacctgtactcaacaaatcaggagtgcatcaagatgcttgtaggcaacaaagttgataaggagagtgaaagggttgtcaccaaaaaagagggaattgattttgccagggaatatggatgtcttttcatcgaatgcagtgcaaagacaagggttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="11689" stop="16024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11992" g_stop="12314" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="352" r_length="324" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12315" i_stop="13098" i_length="784">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13099" g_stop="13167" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="421" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13168" i_stop="14332" i_length="1165">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14333" g_stop="14398" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="487" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14399" i_stop="15325" i_length="927">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15326" g_stop="15447" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="609" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15448" i_stop="15628" i_length="181">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15629" g_stop="15724" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="705" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E724908" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11992" e_stop="12314"/>
          <exon e_start="13099" e_stop="13167"/>
          <exon e_start="14333" e_stop="14398"/>
          <exon e_start="15326" e_stop="15447"/>
          <exon e_start="15629" e_stop="15724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTTTTTTTTCTTCTTCGATTTCGTTTTTTAATTTTGTTGATTTGATATATAG-TTTTTTTTTGAATCTGTGTTTATTGATTGTTGTTCTGAATTTTATTTTTTTTGGATCTTAGGGTTTTTTAGGTAGATTGAGTATCTGGGTATAACTGGAAATTTGAAATTGTTGGAAGGTTTTTGAGAAAATGGAACCGTCTTCGTCTTCGCCGGAGTTTGATTACTTGTTTAAGCTGTTGTTGATTGGAGATTCAGGAGTAGGGAAGAGTAGTTTGTTGCTCAGTTTCACTTCTGATGCCTTTGAGGATCTTTCTCCAACTATTGGTAAGTTGTGTTAATATGTCCTTTTTGAAAATTGTTAATTTATAGGCTTGTCTGTTTTTAAGTATATTGTGCAAATATTATTGCTTAAAAATTGTTTTTTTGTTGTTGTGTACATTTGTAAATAAAGAGGAGGTGTGTGTGGAAGTGGGAATGTTAGATTAATCAAATATGAAATATTGGGTGATAATTAATTTGTGGATATGATGGTATTGATGGAAAGATTGAAAATAATAGTTGTGTTTTGTGGGTGTGGTAATTAGTTAAGTGAGGGTTCTTTCAGCTGTTTATGCGCGGAACTTGTGTTGGTCAATGGTTCTATTGCATATTGAAGGTTAATTAACAGTTTGGCTGCAGCGATTCGATAAGTTGAAGCCGCATAAATTGTGAAAGAGTTAATAAGACACTATTTGGAATTGTTATGTGCCTATATCAGAAGTGAAACTAACAGTTCGAGATAATTCAATATGAGTGGACGAGGTGGTGTTGCATAACTAAATTTAGGGGAGTATTTACTGCATTGTGGTATTCATGTCGTGCCGCATGACCAGCAGCAACAAAAAGAAAATAGATACTTTAGGATTAAAATGGTGGTATAAACAGTTAATTGATCTGACCAATTTCATGATGGTCTTTTCCGTTACACAGTGTCTGTACTGACAAATATATTAAGAGATAGTGCACTTGAACTGAACTTAGCAGGTTTTCACCGTGCACTTAATATGCCATAAATGCATTAGATAAATCCTATTTCTTTTATGCATTAAGTCATTTCTCATATTCTCAGGTGTGGACTTCAAGGTAAAACATGTCACCCTCGGGGGGAAGAAGTTGAAGCTTGCTATATGGGATACAGGTAATTCTGTTATTTTATGCCCGATCCTCAATAAAGTCATGCTTTATTTTAAATGTTTTAGTTGCAAACCCTTTTCACCAAGTAGCATTCTTTTAAACCCGGATTCTTATCCAATTATATCCTATGCAAACCAATGAAAGCTCATTATTGATTACCCCTTAAGTTAAATTATATGACATGGTATCCCGGGTTTTATCTTGTGGTTTTCCATCTAAAAGCTAAAATTTCTTCAACCTAAGAAACCTTATTTTGCATCTGTCAAGTAAGAGTGAAGAATTGAAAATTATGTCCCCCTTGAGTCATTTGATATTACAATTTACTTGACAGAAACTAGTACTGTCAACTGTTGGTCGCAACACACACAAGTAAATGCAATTGCACGCATACACCAAAAACTCACCATACCAAGAATAGGACAACGTTGGTTTGTTTAGACAACTAAACTTGCTTCATACACCAAAAACTCACCAATTACCAAGAATAGGACAACGTTGGTTTGTTTAGACAACTAAACTTGCTTAAAGAACCAAACTAAACATGAATCAAATTTTTGATAAATTTAGAGCAAGTAGAATCTTGTCAAATTCTGAATGCTAAAATCTTTGTGATTTCTCTTGGTACTTCATTGAGCTTCTCGTATTCTCCTTACTGTACCTTGATGAATTAATCTACAATCAATTAGATGAACCAGGCGCAATGTTGTAATACACATCTTTTTGATGCCATTAATGAAGCCAATTACTTCTTCATAACCAAGCACAATGCAGCACTTAGGCTCTAAGATTAGAGGACCTAGGCGGGTTGTCCACAAGTTCAAATAGTGATGCCTGTTATTCAGTTAGGTGTGGGGGTGCCAATGGTAAGTTGAATATTGTATATTAAAATGAGGAAGACCTATGAAGTGCCTTGAAACTTAGGAAATCTTAACTAACGAATTCTTGATATTTGTTCATTTATTTAAAATCAATTCATCACCAACTGACCCATCTAACGCCTTTGGAAATAAGGTGGTGGCAGAGTGCGCTGCTGATTGGTATTGCTTCTTTGAATATTGTTGTCAATTTAATTCAGTGATTGAACTCAGCATGTTTTGCTCAATGTGCTAATAAGAGGTCTCCTCCAGCACAATTCTTAGTTATAACATTATGACTTTCTTGTTTTGCAGCTGGACAGGAAAGATTTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGGGTAATCTGACATCTCTTCTTTCTGCTTTGTTATTTGGTTTGAGTATTTGACGAATATCCAATATTATGTAATCATCATGCTACACTCACTTCATTTGCTTTATAAGAGATAAGCAATGTTCACTGCTGTCAGGACAAACACTAAGCACAGGACAAGAAGTTGGCACAGCTTGCAGCCTGCGTATATATGACATTATGCTTCCTTTTGTGTTGGTTCATATGGTTGTCGTAGTTTTCGAGTTTCTATAAATAGTAGTCCATAACATTGAAAGAGTGTTCTAGTACCACGGAGAATGGATTGTAGAGTGTCTTGACTTCTTAGAGTATTTCTTAGGAGAAGTATACGTCCTTTCTTGCATTGTTAAAAGAATAGAAACTGGAAAGAGAAAACTAGAGCTGGTGCATATGAAAGTATACATCCTTTCTTGCACTGTTAGAAGAATAGAAATGTTAGTGGAAAGAGAACTAGTGCTGGTGCACAAGAAACCTCTTTAACGAATTGAAACGTTAGTGGAAAGAGAACTAGTGCTGGTGCATAGGTAACCTCTTTAACGATCTGATTGTGAGTTCCATTTAGAAATATGATTCTTCTTGCTTGTTAAAAGAATAGAAACATTAGTGGAAAGACAAAACTAGTGCTGGTTCATATGAAAGTATACGACCTTTCTTGCAGTTTTAATAGAATAGAAACGTTAGTGGAAAGAGCACTAGTGCTGGTGCATAGGAAAGCTCTTTAACAATCTGATTGTGAGTACCATTTAGAAATATGATTCTTCTTGCTTGTTTATTTTTAGAAGCAAATTCAGTTTCTTCTTAATGAATTTCTTGTTGTTCGAACAAATTCTTTCACCTTACTCCCTTGCCACCCCCAAGAATTTTTTTAGAATGTTGTCTTTTTTTAGACTTATCTATCTTTGATTTTCAACAGTTTATGATGTAACAAGGCGAGACACATTTACTAATCTCTCTGATATATGGGCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAGGTACCTCTCCTCGTTTGCAGAAGAGAATTTCTTCCATCTCAAGCTTCTTCTATTTCCCAAACACAATCGTATACGCTATATTGACCAGGTGCATTTGTTTCTTTTGAGTCAAATTGGCGGTACGTGATGATGCTCGTGAATTTTCAAGGGATGATTCACATACATATGAATTTTTTTGCAGGAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACGAGGGTTAAT</genome_strand>
        <mrna_strand>CTCTTCTTTTTTTTCTTCTTCGATTTCGTTTTTTAATTTTGTTGATTTGATATATAGTTTTTTTTTTGAATCTGTGTTTATTGATTGTTGTTCTGAATTTTATTTTTTTTGGATCTTAGGGTTTTTTAGGTAAATTGAGTATCTGGGTATAACTGGAAATTTGAAATTGTTGGAAGGTTTTTGAAAAAATGGAACCGTCTTCGTCTTCCCCGGAGTTTGATTACTTGTTTAAGCTGTTGTTGATTGGAAATTCAGGAGTAGGGAAAAGTAGTTTGTTGCTCAGTTTCACTTCTGATGCCTTTGAGGATCTTTCTCCAACTATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGGACTTCAAGGTAAAACATGTCACCCTCGGGGGGAAAAAGTTGAACCTTGCTATATGGGATACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAGGAAAAATTTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGATGTAACAAGGCGAGACACATTTACTAATCTCTCTGATATATGGGCCAAAAAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAG.....................................................................................................................................................................................GAGAGTGAAAGGGTTGTCACCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACAAGGGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254932" ref_strand="+" ref_description="SGN-E254932 [cLEG-33-K10]">
      <seq>aattttgttgatttgataattagttttttttgtttattgattgttgttctgaattttattttttttggatcttagggttttttaggtagattgagtatctgggtataactggaaatttgaaattgttggaaggtttttgagaaaatggaaccgtcttcgtcttcgccggagtttgattacttgtttaagctgttgttgattggagattcaggagtagggaagagtagtttgttgctcagtttcacttctgatgcctttgaggatctttctccaactattggtgtggacttcaaggtaaaacatgtcaccctcggggggaagaagttgaagcttgctatatgggatacagctggacaggaaagatttaggactttaacgagttcatactaccgaggagctcaaggaataatcatggtttatgatgtaacaaggcgagacacatttactaatctctctgatatatgggccaaagaaatcgacctgtactcaacaaatcaggagtgcatcaagatgcttgtaggcaacaaagttgataaggagagtgaaagggttgtcagcaaaaaagagggaattgattctgccagggaatatggatgtcttttcatcgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="11761" stop="16002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12026" g_stop="12314" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12315" i_stop="13098" i_length="784">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13099" g_stop="13167" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="349" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13168" i_stop="14332" i_length="1165">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14333" g_stop="14398" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="415" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14399" i_stop="15325" i_length="927">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15326" g_stop="15447" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="537" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15448" i_stop="15628" i_length="181">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15629" g_stop="15702" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="611" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E254932" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12026" e_stop="12314"/>
          <exon e_start="13099" e_stop="13167"/>
          <exon e_start="14333" e_stop="14398"/>
          <exon e_start="15326" e_stop="15447"/>
          <exon e_start="15629" e_stop="15702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGTTGATTTGATATATAGTTTTTTTTTGAATCTGTGTTTATTGATTGTTGTTCTGAATTTTATTTTTTTTGGATCTTAGGGTTTTTTAGGTAGATTGAGTATCTGGGTATAACTGGAAATTTGAAATTGTTGGAAGGTTTTTGAGAAAATGGAACCGTCTTCGTCTTCGCCGGAGTTTGATTACTTGTTTAAGCTGTTGTTGATTGGAGATTCAGGAGTAGGGAAGAGTAGTTTGTTGCTCAGTTTCACTTCTGATGCCTTTGAGGATCTTTCTCCAACTATTGGTAAGTTGTGTTAATATGTCCTTTTTGAAAATTGTTAATTTATAGGCTTGTCTGTTTTTAAGTATATTGTGCAAATATTATTGCTTAAAAATTGTTTTTTTGTTGTTGTGTACATTTGTAAATAAAGAGGAGGTGTGTGTGGAAGTGGGAATGTTAGATTAATCAAATATGAAATATTGGGTGATAATTAATTTGTGGATATGATGGTATTGATGGAAAGATTGAAAATAATAGTTGTGTTTTGTGGGTGTGGTAATTAGTTAAGTGAGGGTTCTTTCAGCTGTTTATGCGCGGAACTTGTGTTGGTCAATGGTTCTATTGCATATTGAAGGTTAATTAACAGTTTGGCTGCAGCGATTCGATAAGTTGAAGCCGCATAAATTGTGAAAGAGTTAATAAGACACTATTTGGAATTGTTATGTGCCTATATCAGAAGTGAAACTAACAGTTCGAGATAATTCAATATGAGTGGACGAGGTGGTGTTGCATAACTAAATTTAGGGGAGTATTTACTGCATTGTGGTATTCATGTCGTGCCGCATGACCAGCAGCAACAAAAAGAAAATAGATACTTTAGGATTAAAATGGTGGTATAAACAGTTAATTGATCTGACCAATTTCATGATGGTCTTTTCCGTTACACAGTGTCTGTACTGACAAATATATTAAGAGATAGTGCACTTGAACTGAACTTAGCAGGTTTTCACCGTGCACTTAATATGCCATAAATGCATTAGATAAATCCTATTTCTTTTATGCATTAAGTCATTTCTCATATTCTCAGGTGTGGACTTCAAGGTAAAACATGTCACCCTCGGGGGGAAGAAGTTGAAGCTTGCTATATGGGATACAGGTAATTCTGTTATTTTATGCCCGATCCTCAATAAAGTCATGCTTTATTTTAAATGTTTTAGTTGCAAACCCTTTTCACCAAGTAGCATTCTTTTAAACCCGGATTCTTATCCAATTATATCCTATGCAAACCAATGAAAGCTCATTATTGATTACCCCTTAAGTTAAATTATATGACATGGTATCCCGGGTTTTATCTTGTGGTTTTCCATCTAAAAGCTAAAATTTCTTCAACCTAAGAAACCTTATTTTGCATCTGTCAAGTAAGAGTGAAGAATTGAAAATTATGTCCCCCTTGAGTCATTTGATATTACAATTTACTTGACAGAAACTAGTACTGTCAACTGTTGGTCGCAACACACACAAGTAAATGCAATTGCACGCATACACCAAAAACTCACCATACCAAGAATAGGACAACGTTGGTTTGTTTAGACAACTAAACTTGCTTCATACACCAAAAACTCACCAATTACCAAGAATAGGACAACGTTGGTTTGTTTAGACAACTAAACTTGCTTAAAGAACCAAACTAAACATGAATCAAATTTTTGATAAATTTAGAGCAAGTAGAATCTTGTCAAATTCTGAATGCTAAAATCTTTGTGATTTCTCTTGGTACTTCATTGAGCTTCTCGTATTCTCCTTACTGTACCTTGATGAATTAATCTACAATCAATTAGATGAACCAGGCGCAATGTTGTAATACACATCTTTTTGATGCCATTAATGAAGCCAATTACTTCTTCATAACCAAGCACAATGCAGCACTTAGGCTCTAAGATTAGAGGACCTAGGCGGGTTGTCCACAAGTTCAAATAGTGATGCCTGTTATTCAGTTAGGTGTGGGGGTGCCAATGGTAAGTTGAATATTGTATATTAAAATGAGGAAGACCTATGAAGTGCCTTGAAACTTAGGAAATCTTAACTAACGAATTCTTGATATTTGTTCATTTATTTAAAATCAATTCATCACCAACTGACCCATCTAACGCCTTTGGAAATAAGGTGGTGGCAGAGTGCGCTGCTGATTGGTATTGCTTCTTTGAATATTGTTGTCAATTTAATTCAGTGATTGAACTCAGCATGTTTTGCTCAATGTGCTAATAAGAGGTCTCCTCCAGCACAATTCTTAGTTATAACATTATGACTTTCTTGTTTTGCAGCTGGACAGGAAAGATTTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGGGTAATCTGACATCTCTTCTTTCTGCTTTGTTATTTGGTTTGAGTATTTGACGAATATCCAATATTATGTAATCATCATGCTACACTCACTTCATTTGCTTTATAAGAGATAAGCAATGTTCACTGCTGTCAGGACAAACACTAAGCACAGGACAAGAAGTTGGCACAGCTTGCAGCCTGCGTATATATGACATTATGCTTCCTTTTGTGTTGGTTCATATGGTTGTCGTAGTTTTCGAGTTTCTATAAATAGTAGTCCATAACATTGAAAGAGTGTTCTAGTACCACGGAGAATGGATTGTAGAGTGTCTTGACTTCTTAGAGTATTTCTTAGGAGAAGTATACGTCCTTTCTTGCATTGTTAAAAGAATAGAAACTGGAAAGAGAAAACTAGAGCTGGTGCATATGAAAGTATACATCCTTTCTTGCACTGTTAGAAGAATAGAAATGTTAGTGGAAAGAGAACTAGTGCTGGTGCACAAGAAACCTCTTTAACGAATTGAAACGTTAGTGGAAAGAGAACTAGTGCTGGTGCATAGGTAACCTCTTTAACGATCTGATTGTGAGTTCCATTTAGAAATATGATTCTTCTTGCTTGTTAAAAGAATAGAAACATTAGTGGAAAGACAAAACTAGTGCTGGTTCATATGAAAGTATACGACCTTTCTTGCAGTTTTAATAGAATAGAAACGTTAGTGGAAAGAGCACTAGTGCTGGTGCATAGGAAAGCTCTTTAACAATCTGATTGTGAGTACCATTTAGAAATATGATTCTTCTTGCTTGTTTATTTTTAGAAGCAAATTCAGTTTCTTCTTAATGAATTTCTTGTTGTTCGAACAAATTCTTTCACCTTACTCCCTTGCCACCCCCAAGAATTTTTTTAGAATGTTGTCTTTTTTTAGACTTATCTATCTTTGATTTTCAACAGTTTATGATGTAACAAGGCGAGACACATTTACTAATCTCTCTGATATATGGGCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAGGTACCTCTCCTCGTTTGCAGAAGAGAATTTCTTCCATCTCAAGCTTCTTCTATTTCCCAAACACAATCGTATACGCTATATTGACCAGGTGCATTTGTTTCTTTTGAGTCAAATTGGCGGTACGTGATGATGCTCGTGAATTTTCAAGGGATGATTCACATACATATGAATTTTTTTGCAGGAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATG</genome_strand>
        <mrna_strand>AATTTTGTTGATTTGATA-AT---TAGTTTTT---T-T-TGTTTATTGATTGTTGTTCTGAATTTTATTTTTTTTGGATCTTAGGGTTTTTTAGGTAGATTGAGTATCTGGGTATAACTGGAAATTTGAAATTGTTGGAAGGTTTTTGAGAAAATGGAACCGTCTTCGTCTTCGCCGGAGTTTGATTACTTGTTTAAGCTGTTGTTGATTGGAGATTCAGGAGTAGGGAAGAGTAGTTTGTTGCTCAGTTTCACTTCTGATGCCTTTGAGGATCTTTCTCCAACTATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACTTCAAGGTAAAACATGTCACCCTCGGGGGGAAGAAGTTGAAGCTTGCTATATGGGATACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAGGAAAGATTTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGATGTAACAAGGCGAGACACATTTACTAATCTCTCTGATATATGGGCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAG.....................................................................................................................................................................................GAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTCTGCCAGGGAATATGGATGTCTTTTCATCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608266" ref_strand="+" ref_description="SGN-E608266 [24249]">
      <seq>gtaaaacatgtcaccctcggggggaagaagttgaagcttgctatatgggatacagctggacaggaaagatctaggactttaacgagttcatactaccgaggagctcaaggaataatcatggtttatgatgtaacaaggcgagacacattcactaatctctctgatatatgggccaaagaaatcgactgtattcaacaaatcaggagtgcatcaagatgcttgttggcaacaaagttgataaggagagtgaaagggttgtcagcaaaaaagagggaattgaatttgccagggaatatggatgtcttttcatcgaatgcagtgcaaagacaagggttaatgtggaacagtgctttgaggagcttgtgctgaagattctggacactccaagtctcttggctgaaggttcagctggtgtcaggaaaaatatatttagacagaaacctccggaatctgatgcatcaacaagtggctgttgttgagatggatgtttcgttgttttcttcacgctttccctttcttttgtaaaacaaaatgatgtaattacttggagatgacaaatctgtctctatccttcacgttggtagtccgtttgactgaaatgttctcttgctcttaaatttgatatttgaaagctttcttccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="12813" stop="16954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13113" g_stop="13167" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13168" i_stop="14332" i_length="1165">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14333" g_stop="14398" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="121" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14399" i_stop="15325" i_length="927">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15326" g_stop="15447" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="242" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15448" i_stop="15628" i_length="181">
            <donor d_prob="0.885" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15629" g_stop="15757" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="371" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15758" i_stop="16409" i_length="652">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16410" g_stop="16636" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="597" r_length="226" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E608266" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13113" e_stop="13167"/>
          <exon e_start="14333" e_stop="14398"/>
          <exon e_start="15326" e_stop="15447"/>
          <exon e_start="15629" e_stop="15757"/>
          <exon e_start="16410" e_stop="16636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACATGTCACCCTCGGGGGGAAGAAGTTGAAGCTTGCTATATGGGATACAGGTAATTCTGTTATTTTATGCCCGATCCTCAATAAAGTCATGCTTTATTTTAAATGTTTTAGTTGCAAACCCTTTTCACCAAGTAGCATTCTTTTAAACCCGGATTCTTATCCAATTATATCCTATGCAAACCAATGAAAGCTCATTATTGATTACCCCTTAAGTTAAATTATATGACATGGTATCCCGGGTTTTATCTTGTGGTTTTCCATCTAAAAGCTAAAATTTCTTCAACCTAAGAAACCTTATTTTGCATCTGTCAAGTAAGAGTGAAGAATTGAAAATTATGTCCCCCTTGAGTCATTTGATATTACAATTTACTTGACAGAAACTAGTACTGTCAACTGTTGGTCGCAACACACACAAGTAAATGCAATTGCACGCATACACCAAAAACTCACCATACCAAGAATAGGACAACGTTGGTTTGTTTAGACAACTAAACTTGCTTCATACACCAAAAACTCACCAATTACCAAGAATAGGACAACGTTGGTTTGTTTAGACAACTAAACTTGCTTAAAGAACCAAACTAAACATGAATCAAATTTTTGATAAATTTAGAGCAAGTAGAATCTTGTCAAATTCTGAATGCTAAAATCTTTGTGATTTCTCTTGGTACTTCATTGAGCTTCTCGTATTCTCCTTACTGTACCTTGATGAATTAATCTACAATCAATTAGATGAACCAGGCGCAATGTTGTAATACACATCTTTTTGATGCCATTAATGAAGCCAATTACTTCTTCATAACCAAGCACAATGCAGCACTTAGGCTCTAAGATTAGAGGACCTAGGCGGGTTGTCCACAAGTTCAAATAGTGATGCCTGTTATTCAGTTAGGTGTGGGGGTGCCAATGGTAAGTTGAATATTGTATATTAAAATGAGGAAGACCTATGAAGTGCCTTGAAACTTAGGAAATCTTAACTAACGAATTCTTGATATTTGTTCATTTATTTAAAATCAATTCATCACCAACTGACCCATCTAACGCCTTTGGAAATAAGGTGGTGGCAGAGTGCGCTGCTGATTGGTATTGCTTCTTTGAATATTGTTGTCAATTTAATTCAGTGATTGAACTCAGCATGTTTTGCTCAATGTGCTAATAAGAGGTCTCCTCCAGCACAATTCTTAGTTATAACATTATGACTTTCTTGTTTTGCAGCTGGACAGGAAAGATTTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGGGTAATCTGACATCTCTTCTTTCTGCTTTGTTATTTGGTTTGAGTATTTGACGAATATCCAATATTATGTAATCATCATGCTACACTCACTTCATTTGCTTTATAAGAGATAAGCAATGTTCACTGCTGTCAGGACAAACACTAAGCACAGGACAAGAAGTTGGCACAGCTTGCAGCCTGCGTATATATGACATTATGCTTCCTTTTGTGTTGGTTCATATGGTTGTCGTAGTTTTCGAGTTTCTATAAATAGTAGTCCATAACATTGAAAGAGTGTTCTAGTACCACGGAGAATGGATTGTAGAGTGTCTTGACTTCTTAGAGTATTTCTTAGGAGAAGTATACGTCCTTTCTTGCATTGTTAAAAGAATAGAAACTGGAAAGAGAAAACTAGAGCTGGTGCATATGAAAGTATACATCCTTTCTTGCACTGTTAGAAGAATAGAAATGTTAGTGGAAAGAGAACTAGTGCTGGTGCACAAGAAACCTCTTTAACGAATTGAAACGTTAGTGGAAAGAGAACTAGTGCTGGTGCATAGGTAACCTCTTTAACGATCTGATTGTGAGTTCCATTTAGAAATATGATTCTTCTTGCTTGTTAAAAGAATAGAAACATTAGTGGAAAGACAAAACTAGTGCTGGTTCATATGAAAGTATACGACCTTTCTTGCAGTTTTAATAGAATAGAAACGTTAGTGGAAAGAGCACTAGTGCTGGTGCATAGGAAAGCTCTTTAACAATCTGATTGTGAGTACCATTTAGAAATATGATTCTTCTTGCTTGTTTATTTTTAGAAGCAAATTCAGTTTCTTCTTAATGAATTTCTTGTTGTTCGAACAAATTCTTTCACCTTACTCCCTTGCCACCCCCAAGAATTTTTTTAGAATGTTGTCTTTTTTTAGACTTATCTATCTTTGATTTTCAACAGTTTATGATGTAACAAGGCGAGACACATTTACTAATCTCTCTGATATATGGGCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAGGTACCTCTCCTCGTTTGCAGAAGAGAATTTCTTCCATCTCAAGCTTCTTCTATTTCCCAAACACAATCGTATACGCTATATTGACCAGGTGCATTTGTTTCTTTTGAGTCAAATTGGCGGTACGTGATGATGCTCGTGAATTTTCAAGGGATGATTCACATACATATGAATTTTTTTGCAGGAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACGAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAGGTATGAATCAGCCAAGGGTCTTTCTTGTATATTGTTCATGTTATAGTTTGAATGGACTAGTAAAAATTAAAAAAAGAAAAATAGTTTTGAGTGGACTTGCCAGTGGTCATGAGTTGTTAAAAATAAATGGAGTTACAATGCAACTGAACATTAACAGGGATGTAAGATCTCTACCTTCATTTTAGATGTTTAACTGTCTTCATCGGTGATAACATATCTCGAGTGTACCTAGAGCAGGCCATATCTTAATCATGTCCCATGCATTTCTGGGAGATCTCCTTGTTGAACAGCTGGGCTTTTGCATTCTAGGCAAACATTAAACTGAACCACAGAGACTTTTAACACTAGTGCCATGCTAGAAGAAAGTTCTTTCTTTGTTGGGGAGATGATTGAACTTTGTCAGTCATCTGGCGGTAGTCACTGCAACTTGCCCTGGTTGTTTCCCTGTCCAACATCCTTGCTAGCAAATATTATCTCAATAAATGGTTCAAATATTGCTTCGCGGAACAGAATGCATGCTCTATGAAGTTCAGTTTACATTTTGTCTTCATCTGTAATGTGTTATTGCAATAGTCCCTTTTACTTCCCCTCTCTCTACCGAAGGAGAACATTGCTTAGTCGTGAACTTGTGATGATGAATTTTGGTTTGCAGATTTTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGCGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGACGTTTCTTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGACGAACTCTGTTTCTATCCTTCACGTTTGTAGTTTGTTTGACTGA</genome_strand>
        <mrna_strand>GTAAAACATGTCACCCTCGGGGGGAAGAAGTTGAAGCTTGCTATATGGGATACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAGGAAAGATCTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGATGTAACAAGGCGAGACACATTCACTAATCTCTCTGATATATGGGCCAAAGAAATCGA-CTGTATTCAACAAATCAGGAGTGCATCAAGATGCTTGTTGGCAACAAAGTTGATAAG.....................................................................................................................................................................................GAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGAATTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACAAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGTGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGATGTTTCGTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGAC-AAATCTGTCTCTATCCTTCACGTTGGTAGTCCGTTTGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308394" ref_strand="+" ref_description="SGN-E308394 [cLEY-25-E7]">
      <seq>tttgaagcttgctatatgggatacagctgggcaggaaggatttaggactttaacgagttcatactaccgaggagctcaaggaataatcatggtttatgatgtaacaaggcgagacacatttactaatctctctgatatatgggccaaagaaatcgacctgtactcaacaaatcaggagtgcatcaagatgcttgtaggcaacaaagttgataaggagagtgaaagggttgtcagcaaaaaagagggaattgattttgccagggaatatggatgtcttttcatcgaatgcagtgcaaagacgagggttaatgtggaacagtgctttgaggagcttgtgctgaagattttggacactccaagtctcttggctgaaggttcagctggcgtcaggaaaaatatatttagacagaaacctccggaatctgatgcatcaacaagtggctgttgttgagatggacgtttctttgttttcttcacgctttccctttcttttgtaaaacaaaatgatgtaattacttggagatgacgaactttgtttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="12843" stop="16908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13142" g_stop="13167" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13168" i_stop="14332" i_length="1165">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14333" g_stop="14398" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="92" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14399" i_stop="15325" i_length="927">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15326" g_stop="15447" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="214" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15448" i_stop="15628" i_length="181">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15629" g_stop="15757" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="343" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15758" i_stop="16409" i_length="652">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16410" g_stop="16608" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="542" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E308394" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13142" e_stop="13167"/>
          <exon e_start="14333" e_stop="14398"/>
          <exon e_start="15326" e_stop="15447"/>
          <exon e_start="15629" e_stop="15757"/>
          <exon e_start="16410" e_stop="16608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGCTTGCTATATGGGATACAGGTAATTCTGTTATTTTATGCCCGATCCTCAATAAAGTCATGCTTTATTTTAAATGTTTTAGTTGCAAACCCTTTTCACCAAGTAGCATTCTTTTAAACCCGGATTCTTATCCAATTATATCCTATGCAAACCAATGAAAGCTCATTATTGATTACCCCTTAAGTTAAATTATATGACATGGTATCCCGGGTTTTATCTTGTGGTTTTCCATCTAAAAGCTAAAATTTCTTCAACCTAAGAAACCTTATTTTGCATCTGTCAAGTAAGAGTGAAGAATTGAAAATTATGTCCCCCTTGAGTCATTTGATATTACAATTTACTTGACAGAAACTAGTACTGTCAACTGTTGGTCGCAACACACACAAGTAAATGCAATTGCACGCATACACCAAAAACTCACCATACCAAGAATAGGACAACGTTGGTTTGTTTAGACAACTAAACTTGCTTCATACACCAAAAACTCACCAATTACCAAGAATAGGACAACGTTGGTTTGTTTAGACAACTAAACTTGCTTAAAGAACCAAACTAAACATGAATCAAATTTTTGATAAATTTAGAGCAAGTAGAATCTTGTCAAATTCTGAATGCTAAAATCTTTGTGATTTCTCTTGGTACTTCATTGAGCTTCTCGTATTCTCCTTACTGTACCTTGATGAATTAATCTACAATCAATTAGATGAACCAGGCGCAATGTTGTAATACACATCTTTTTGATGCCATTAATGAAGCCAATTACTTCTTCATAACCAAGCACAATGCAGCACTTAGGCTCTAAGATTAGAGGACCTAGGCGGGTTGTCCACAAGTTCAAATAGTGATGCCTGTTATTCAGTTAGGTGTGGGGGTGCCAATGGTAAGTTGAATATTGTATATTAAAATGAGGAAGACCTATGAAGTGCCTTGAAACTTAGGAAATCTTAACTAACGAATTCTTGATATTTGTTCATTTATTTAAAATCAATTCATCACCAACTGACCCATCTAACGCCTTTGGAAATAAGGTGGTGGCAGAGTGCGCTGCTGATTGGTATTGCTTCTTTGAATATTGTTGTCAATTTAATTCAGTGATTGAACTCAGCATGTTTTGCTCAATGTGCTAATAAGAGGTCTCCTCCAGCACAATTCTTAGTTATAACATTATGACTTTCTTGTTTTGCAGCTGGACAGGAAAGATTTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGGGTAATCTGACATCTCTTCTTTCTGCTTTGTTATTTGGTTTGAGTATTTGACGAATATCCAATATTATGTAATCATCATGCTACACTCACTTCATTTGCTTTATAAGAGATAAGCAATGTTCACTGCTGTCAGGACAAACACTAAGCACAGGACAAGAAGTTGGCACAGCTTGCAGCCTGCGTATATATGACATTATGCTTCCTTTTGTGTTGGTTCATATGGTTGTCGTAGTTTTCGAGTTTCTATAAATAGTAGTCCATAACATTGAAAGAGTGTTCTAGTACCACGGAGAATGGATTGTAGAGTGTCTTGACTTCTTAGAGTATTTCTTAGGAGAAGTATACGTCCTTTCTTGCATTGTTAAAAGAATAGAAACTGGAAAGAGAAAACTAGAGCTGGTGCATATGAAAGTATACATCCTTTCTTGCACTGTTAGAAGAATAGAAATGTTAGTGGAAAGAGAACTAGTGCTGGTGCACAAGAAACCTCTTTAACGAATTGAAACGTTAGTGGAAAGAGAACTAGTGCTGGTGCATAGGTAACCTCTTTAACGATCTGATTGTGAGTTCCATTTAGAAATATGATTCTTCTTGCTTGTTAAAAGAATAGAAACATTAGTGGAAAGACAAAACTAGTGCTGGTTCATATGAAAGTATACGACCTTTCTTGCAGTTTTAATAGAATAGAAACGTTAGTGGAAAGAGCACTAGTGCTGGTGCATAGGAAAGCTCTTTAACAATCTGATTGTGAGTACCATTTAGAAATATGATTCTTCTTGCTTGTTTATTTTTAGAAGCAAATTCAGTTTCTTCTTAATGAATTTCTTGTTGTTCGAACAAATTCTTTCACCTTACTCCCTTGCCACCCCCAAGAATTTTTTTAGAATGTTGTCTTTTTTTAGACTTATCTATCTTTGATTTTCAACAGTTTATGATGTAACAAGGCGAGACACATTTACTAATCTCTCTGATATATGGGCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAGGTACCTCTCCTCGTTTGCAGAAGAGAATTTCTTCCATCTCAAGCTTCTTCTATTTCCCAAACACAATCGTATACGCTATATTGACCAGGTGCATTTGTTTCTTTTGAGTCAAATTGGCGGTACGTGATGATGCTCGTGAATTTTCAAGGGATGATTCACATACATATGAATTTTTTTGCAGGAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACGAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAGGTATGAATCAGCCAAGGGTCTTTCTTGTATATTGTTCATGTTATAGTTTGAATGGACTAGTAAAAATTAAAAAAAGAAAAATAGTTTTGAGTGGACTTGCCAGTGGTCATGAGTTGTTAAAAATAAATGGAGTTACAATGCAACTGAACATTAACAGGGATGTAAGATCTCTACCTTCATTTTAGATGTTTAACTGTCTTCATCGGTGATAACATATCTCGAGTGTACCTAGAGCAGGCCATATCTTAATCATGTCCCATGCATTTCTGGGAGATCTCCTTGTTGAACAGCTGGGCTTTTGCATTCTAGGCAAACATTAAACTGAACCACAGAGACTTTTAACACTAGTGCCATGCTAGAAGAAAGTTCTTTCTTTGTTGGGGAGATGATTGAACTTTGTCAGTCATCTGGCGGTAGTCACTGCAACTTGCCCTGGTTGTTTCCCTGTCCAACATCCTTGCTAGCAAATATTATCTCAATAAATGGTTCAAATATTGCTTCGCGGAACAGAATGCATGCTCTATGAAGTTCAGTTTACATTTTGTCTTCATCTGTAATGTGTTATTGCAATAGTCCCTTTTACTTCCCCTCTCTCTACCGAAGGAGAACATTGCTTAGTCGTGAACTTGTGATGATGAATTTTGGTTTGCAGATTTTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGCGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGACGTTTCTTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGACGAACTCTGTTTCTAT</genome_strand>
        <mrna_strand>TTTGAAGCTTGCTATATGGGATACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCAGGAAGGATTTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGATGTAACAAGGCGAGACACATTTACTAATCTCTCTGATATATGGGCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAG.....................................................................................................................................................................................GAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACGAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGCGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGACGTTTCTTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGACGAACTTTGTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352516" ref_strand="+" ref_description="SGN-E352516 [cTOS-9-I10]">
      <seq>tggacaggaaagatttaggactttaacgagttcatactaccgaggagctcaaggaataatcatggtttatgatgtaacaaggcgagacacatttactaatctctctgatatatgggccaaagaaatcgacctgtactcaacaaatcaggagtgcatcaagatgcttgtaggcaacaaagttgataaggagagtgaaagggttgtcagcaaaaaagagggaattgattttgccagggaatatggatgtcttttcatcgaatgcagtgcaaagacgagggttaatgtggaacagtgctttgaggagcttgtgctgaagattttggacactccaagtctcttggctgaaggttcagctggcgtcaggaaaaatatatttagacagaaacctccggaatctgatgcatcaacaagtggctgttgttgagatggacgtttctttgttttcttcacgctttccctttcttttgtaaaacaaaatgatgtaattacttggagatgacgaactctgtttctatccttcacgtttgtagtttgtttgactgaatggtcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="14034" stop="16946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14334" g_stop="14398" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14399" i_stop="15325" i_length="927">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15326" g_stop="15447" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="187" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15448" i_stop="15628" i_length="181">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15629" g_stop="15757" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="316" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15758" i_stop="16409" i_length="652">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16410" g_stop="16646" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="553" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E352516" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14334" e_stop="14398"/>
          <exon e_start="15326" e_stop="15447"/>
          <exon e_start="15629" e_stop="15757"/>
          <exon e_start="16410" e_stop="16646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACAGGAAAGATTTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGGGTAATCTGACATCTCTTCTTTCTGCTTTGTTATTTGGTTTGAGTATTTGACGAATATCCAATATTATGTAATCATCATGCTACACTCACTTCATTTGCTTTATAAGAGATAAGCAATGTTCACTGCTGTCAGGACAAACACTAAGCACAGGACAAGAAGTTGGCACAGCTTGCAGCCTGCGTATATATGACATTATGCTTCCTTTTGTGTTGGTTCATATGGTTGTCGTAGTTTTCGAGTTTCTATAAATAGTAGTCCATAACATTGAAAGAGTGTTCTAGTACCACGGAGAATGGATTGTAGAGTGTCTTGACTTCTTAGAGTATTTCTTAGGAGAAGTATACGTCCTTTCTTGCATTGTTAAAAGAATAGAAACTGGAAAGAGAAAACTAGAGCTGGTGCATATGAAAGTATACATCCTTTCTTGCACTGTTAGAAGAATAGAAATGTTAGTGGAAAGAGAACTAGTGCTGGTGCACAAGAAACCTCTTTAACGAATTGAAACGTTAGTGGAAAGAGAACTAGTGCTGGTGCATAGGTAACCTCTTTAACGATCTGATTGTGAGTTCCATTTAGAAATATGATTCTTCTTGCTTGTTAAAAGAATAGAAACATTAGTGGAAAGACAAAACTAGTGCTGGTTCATATGAAAGTATACGACCTTTCTTGCAGTTTTAATAGAATAGAAACGTTAGTGGAAAGAGCACTAGTGCTGGTGCATAGGAAAGCTCTTTAACAATCTGATTGTGAGTACCATTTAGAAATATGATTCTTCTTGCTTGTTTATTTTTAGAAGCAAATTCAGTTTCTTCTTAATGAATTTCTTGTTGTTCGAACAAATTCTTTCACCTTACTCCCTTGCCACCCCCAAGAATTTTTTTAGAATGTTGTCTTTTTTTAGACTTATCTATCTTTGATTTTCAACAGTTTATGATGTAACAAGGCGAGACACATTTACTAATCTCTCTGATATATGGGCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAGGTACCTCTCCTCGTTTGCAGAAGAGAATTTCTTCCATCTCAAGCTTCTTCTATTTCCCAAACACAATCGTATACGCTATATTGACCAGGTGCATTTGTTTCTTTTGAGTCAAATTGGCGGTACGTGATGATGCTCGTGAATTTTCAAGGGATGATTCACATACATATGAATTTTTTTGCAGGAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACGAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAGGTATGAATCAGCCAAGGGTCTTTCTTGTATATTGTTCATGTTATAGTTTGAATGGACTAGTAAAAATTAAAAAAAGAAAAATAGTTTTGAGTGGACTTGCCAGTGGTCATGAGTTGTTAAAAATAAATGGAGTTACAATGCAACTGAACATTAACAGGGATGTAAGATCTCTACCTTCATTTTAGATGTTTAACTGTCTTCATCGGTGATAACATATCTCGAGTGTACCTAGAGCAGGCCATATCTTAATCATGTCCCATGCATTTCTGGGAGATCTCCTTGTTGAACAGCTGGGCTTTTGCATTCTAGGCAAACATTAAACTGAACCACAGAGACTTTTAACACTAGTGCCATGCTAGAAGAAAGTTCTTTCTTTGTTGGGGAGATGATTGAACTTTGTCAGTCATCTGGCGGTAGTCACTGCAACTTGCCCTGGTTGTTTCCCTGTCCAACATCCTTGCTAGCAAATATTATCTCAATAAATGGTTCAAATATTGCTTCGCGGAACAGAATGCATGCTCTATGAAGTTCAGTTTACATTTTGTCTTCATCTGTAATGTGTTATTGCAATAGTCCCTTTTACTTCCCCTCTCTCTACCGAAGGAGAACATTGCTTAGTCGTGAACTTGTGATGATGAATTTTGGTTTGCAGATTTTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGCGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGACGTTTCTTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGACGAACTCTGTTTCTATCCTTCACGTTTGTAGTTTGTTTGACTGAATGTTCTTCT</genome_strand>
        <mrna_strand>TGGACAGGAAAGATTTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGATGTAACAAGGCGAGACACATTTACTAATCTCTCTGATATATGGGCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAG.....................................................................................................................................................................................GAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACGAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGCGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGACGTTTCTTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGACGAACTCTGTTTCTATCCTTCACGTTTGTAGTTTGTTTGACTGAATGGTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352987" ref_strand="+" ref_description="SGN-E352987 [cTOS-14-C2]">
      <seq>tggacaggaaagatttaggactttaacgagttcatactaccgaggagctcaaggaataatcatggtttatgatgtaacaaggcgagacacatttactaatctctctgatatatgggccaaagaaatcgacctgtactcaacaaatcaggagtgcatcaagatgcttgtaggcaacaaagttgataaggagagtgaaagggttgtcagcaaaaaagagggaattgattttgccagggaatatggatgtcttttcatcgaatgcagtgcaaagacgagggttaatgtggaacagtgctttgaggagcttgtgctgaagattttggacactccaagtctcttggctgaaggttcagctggcgtcaggaaaaatatatttagacagaaacctccggaatctgatgcatcaacaagtggctgttgttgagatggacgtttctttgttttcttcacgctttccctttcttttgtaaaacaaaatgatgtaattacttggagatgacgaactctgtttctatccttcacgtttgtagtttgtttgactgaatgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="14034" stop="16944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14334" g_stop="14398" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14399" i_stop="15325" i_length="927">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15326" g_stop="15447" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="187" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15448" i_stop="15628" i_length="181">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15629" g_stop="15757" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="316" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15758" i_stop="16409" i_length="652">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16410" g_stop="16644" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="551" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E352987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14334" e_stop="14398"/>
          <exon e_start="15326" e_stop="15447"/>
          <exon e_start="15629" e_stop="15757"/>
          <exon e_start="16410" e_stop="16644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACAGGAAAGATTTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGGGTAATCTGACATCTCTTCTTTCTGCTTTGTTATTTGGTTTGAGTATTTGACGAATATCCAATATTATGTAATCATCATGCTACACTCACTTCATTTGCTTTATAAGAGATAAGCAATGTTCACTGCTGTCAGGACAAACACTAAGCACAGGACAAGAAGTTGGCACAGCTTGCAGCCTGCGTATATATGACATTATGCTTCCTTTTGTGTTGGTTCATATGGTTGTCGTAGTTTTCGAGTTTCTATAAATAGTAGTCCATAACATTGAAAGAGTGTTCTAGTACCACGGAGAATGGATTGTAGAGTGTCTTGACTTCTTAGAGTATTTCTTAGGAGAAGTATACGTCCTTTCTTGCATTGTTAAAAGAATAGAAACTGGAAAGAGAAAACTAGAGCTGGTGCATATGAAAGTATACATCCTTTCTTGCACTGTTAGAAGAATAGAAATGTTAGTGGAAAGAGAACTAGTGCTGGTGCACAAGAAACCTCTTTAACGAATTGAAACGTTAGTGGAAAGAGAACTAGTGCTGGTGCATAGGTAACCTCTTTAACGATCTGATTGTGAGTTCCATTTAGAAATATGATTCTTCTTGCTTGTTAAAAGAATAGAAACATTAGTGGAAAGACAAAACTAGTGCTGGTTCATATGAAAGTATACGACCTTTCTTGCAGTTTTAATAGAATAGAAACGTTAGTGGAAAGAGCACTAGTGCTGGTGCATAGGAAAGCTCTTTAACAATCTGATTGTGAGTACCATTTAGAAATATGATTCTTCTTGCTTGTTTATTTTTAGAAGCAAATTCAGTTTCTTCTTAATGAATTTCTTGTTGTTCGAACAAATTCTTTCACCTTACTCCCTTGCCACCCCCAAGAATTTTTTTAGAATGTTGTCTTTTTTTAGACTTATCTATCTTTGATTTTCAACAGTTTATGATGTAACAAGGCGAGACACATTTACTAATCTCTCTGATATATGGGCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAGGTACCTCTCCTCGTTTGCAGAAGAGAATTTCTTCCATCTCAAGCTTCTTCTATTTCCCAAACACAATCGTATACGCTATATTGACCAGGTGCATTTGTTTCTTTTGAGTCAAATTGGCGGTACGTGATGATGCTCGTGAATTTTCAAGGGATGATTCACATACATATGAATTTTTTTGCAGGAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACGAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAGGTATGAATCAGCCAAGGGTCTTTCTTGTATATTGTTCATGTTATAGTTTGAATGGACTAGTAAAAATTAAAAAAAGAAAAATAGTTTTGAGTGGACTTGCCAGTGGTCATGAGTTGTTAAAAATAAATGGAGTTACAATGCAACTGAACATTAACAGGGATGTAAGATCTCTACCTTCATTTTAGATGTTTAACTGTCTTCATCGGTGATAACATATCTCGAGTGTACCTAGAGCAGGCCATATCTTAATCATGTCCCATGCATTTCTGGGAGATCTCCTTGTTGAACAGCTGGGCTTTTGCATTCTAGGCAAACATTAAACTGAACCACAGAGACTTTTAACACTAGTGCCATGCTAGAAGAAAGTTCTTTCTTTGTTGGGGAGATGATTGAACTTTGTCAGTCATCTGGCGGTAGTCACTGCAACTTGCCCTGGTTGTTTCCCTGTCCAACATCCTTGCTAGCAAATATTATCTCAATAAATGGTTCAAATATTGCTTCGCGGAACAGAATGCATGCTCTATGAAGTTCAGTTTACATTTTGTCTTCATCTGTAATGTGTTATTGCAATAGTCCCTTTTACTTCCCCTCTCTCTACCGAAGGAGAACATTGCTTAGTCGTGAACTTGTGATGATGAATTTTGGTTTGCAGATTTTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGCGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGACGTTTCTTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGACGAACTCTGTTTCTATCCTTCACGTTTGTAGTTTGTTTGACTGAATGTTCTT</genome_strand>
        <mrna_strand>TGGACAGGAAAGATTTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGATGTAACAAGGCGAGACACATTTACTAATCTCTCTGATATATGGGCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAG.....................................................................................................................................................................................GAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACGAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGCGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGACGTTTCTTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGACGAACTCTGTTTCTATCCTTCACGTTTGTAGTTTGTTTGACTGAATGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250027" ref_strand="+" ref_description="SGN-E250027 [cLEG-4-F6]">
      <seq>taagagaagtatacgtcctttcttgcattgttaaaagaatagaaactggaaagagaaaacgtagagctggtgcatatgaaagtatacatcctttcttgcactgttagaagaatagaaatgttagtggaaagagaactagtgctggtgcacaggaaacctctttaacgaattgaaacgttagtggaaagagaactagtgctggtgcataggtaacctctttaacgatctgattgtgagttccatttagaaatatgattcttcttgcttgttaaaagaatagaaacattagtggaaagacaaaactagtgctggttcatatgaaagtatacgacctttcttgcagttttaatagaatagaaacgttngtggaaagagcactantgctggtgcataggaaagctttttttcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="14429" stop="15438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14729" g_stop="15140" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E250027" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14729" e_stop="15140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAGAAGTATACGTCCTTTCTTGCATTGTTAAAAGAATAGAAACTGGAAAGAGAAAAC-TAGAGCTGGTGCATATGAAAGTATACATCCTTTCTTGCACTGTTAGAAGAATAGAAATGTTAGTGGAAAGAGAACTAGTGCTGGTGCACAAGAAACCTCTTTAACGAATTGAAACGTTAGTGGAAAGAGAACTAGTGCTGGTGCATAGGTAACCTCTTTAACGATCTGATTGTGAGTTCCATTTAGAAATATGATTCTTCTTGCTTGTTAAAAGAATAGAAACATTAGTGGAAAGACAAAACTAGTGCTGGTTCATATGAAAGTATACGACCTTTCTTGCAGTTTTAATAGAATAGAAACGTTAGTGGAAAGAGCACTAGTGCTGGTGCATAGGAAAGCTCTTTAACAATCT</genome_strand>
        <mrna_strand>TAAGAGAAGTATACGTCCTTTCTTGCATTGTTAAAAGAATAGAAACTGGAAAGAGAAAACGTAGAGCTGGTGCATATGAAAGTATACATCCTTTCTTGCACTGTTAGAAGAATAGAAATGTTAGTGGAAAGAGAACTAGTGCTGGTGCACAGGAAACCTCTTTAACGAATTGAAACGTTAGTGGAAAGAGAACTAGTGCTGGTGCATAGGTAACCTCTTTAACGATCTGATTGTGAGTTCCATTTAGAAATATGATTCTTCTTGCTTGTTAAAAGAATAGAAACATTAGTGGAAAGACAAAACTAGTGCTGGTTCATATGAAAGTATACGACCTTTCTTGCAGTTTTAATAGAATAGAAACGTTNGTGGAAAGAGCACTANTGCTGGTGCATAGGAAAGCTTTTTTTCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339244" ref_strand="+" ref_description="SGN-E339244 [cTOF-4-G8]">
      <seq>gccaaagaaatcgacctgtactcaacaaatcaggagtgcatcaagatgcttgtaggcaacaaagttgataaggagagtgaaagggttgtcagcaaaaaagagggaattgattttgccagggaatatggatgtcttttcatcgaatgcagtgcaaagacgagggttaatgtggaacagtgctttgaggagcttgtgctgaagattttggacactccaagtctcttggctgaaggttcagctggcgtcaggaaaaatatatttagacagaaacctccggaatctgatgcatcaacaagtggctgttgttgagatggacgtttctttgttttcttcacgctttccctttcttttgtaaaacaaaatgatgtaattacttggagatgacgaactctgtttctatccttcacgtttgtagtttgtttgactgaatgttcttctgttgtcctcttgctcttaatttgatatttgaagaagatgaggagttcttttctatttgtgattgattaagaaagattttatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="15076" stop="17035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15376" g_stop="15447" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15448" i_stop="15628" i_length="181">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15629" g_stop="15757" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="201" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15758" i_stop="16409" i_length="652">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16410" g_stop="16740" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="532" r_length="331" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E339244" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15376" e_stop="15447"/>
          <exon e_start="15629" e_stop="15757"/>
          <exon e_start="16410" e_stop="16740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAGGTACCTCTCCTCGTTTGCAGAAGAGAATTTCTTCCATCTCAAGCTTCTTCTATTTCCCAAACACAATCGTATACGCTATATTGACCAGGTGCATTTGTTTCTTTTGAGTCAAATTGGCGGTACGTGATGATGCTCGTGAATTTTCAAGGGATGATTCACATACATATGAATTTTTTTGCAGGAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACGAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAGGTATGAATCAGCCAAGGGTCTTTCTTGTATATTGTTCATGTTATAGTTTGAATGGACTAGTAAAAATTAAAAAAAGAAAAATAGTTTTGAGTGGACTTGCCAGTGGTCATGAGTTGTTAAAAATAAATGGAGTTACAATGCAACTGAACATTAACAGGGATGTAAGATCTCTACCTTCATTTTAGATGTTTAACTGTCTTCATCGGTGATAACATATCTCGAGTGTACCTAGAGCAGGCCATATCTTAATCATGTCCCATGCATTTCTGGGAGATCTCCTTGTTGAACAGCTGGGCTTTTGCATTCTAGGCAAACATTAAACTGAACCACAGAGACTTTTAACACTAGTGCCATGCTAGAAGAAAGTTCTTTCTTTGTTGGGGAGATGATTGAACTTTGTCAGTCATCTGGCGGTAGTCACTGCAACTTGCCCTGGTTGTTTCCCTGTCCAACATCCTTGCTAGCAAATATTATCTCAATAAATGGTTCAAATATTGCTTCGCGGAACAGAATGCATGCTCTATGAAGTTCAGTTTACATTTTGTCTTCATCTGTAATGTGTTATTGCAATAGTCCCTTTTACTTCCCCTCTCTCTACCGAAGGAGAACATTGCTTAGTCGTGAACTTGTGATGATGAATTTTGGTTTGCAGATTTTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGCGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGACGTTTCTTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGACGAACTCTGTTTCTATCCTTCACGTTTGTAGTTTGTTTGACTGAATGTTCTTCTGTTGTCCTCTTGCTCTTAATTTGATATTTGAAGAAGATGAGGAGTTCTTTTCTATTTGTGATTGATTAAGAAAGATTTTATTTACCACAGCAGT</genome_strand>
        <mrna_strand>GCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAG.....................................................................................................................................................................................GAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACGAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGCGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGACGTTTCTTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGACGAACTCTGTTTCTATCCTTCACGTTTGTAGTTTGTTTGACTGAATGTTCTTCTGTTGTCCTCTTGCTCTTAATTTGATATTTGAAGAAGATGAGGAGTTCTTTTCTATTTGTGATTGATTAAGAAAGATTTTATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443364" ref_strand="-" ref_description="SGN-E443364 [cSTA-37-O12]">
      <seq>aagttgataaggagagtgaaagggttgtcagcaaaaaagagggaattgattttgccagggaatatggatgtcttttcatcgaatgcagtgcaaagacaagggttaatgtggaacagtgctttgaggagcttgtgctgaagattctggacactccaagtctcttggctgaaggttcagctggtgtcaggaaaaatatatttagacagaaacctccggaatctgatgcatcaacaagtggctgttgttgagatggatgtttcgttgttttcttcacgctttccctttcttttgtaaaacaaaatgatgtaattacttggagatgacaaactctgtttctatccttcacgtttgtagttcgtttgactgaatgttcttctgttgtcctcttgctcttaatttgatatttgaagaaaaaaaaaaaaaaaaaaactcgagacagttcctctcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="15327" stop="16983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15437" g_stop="15447" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15448" i_stop="15628" i_length="181">
            <donor d_prob="0.885" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15629" g_stop="15757" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="140" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15758" i_stop="16409" i_length="652">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16410" g_stop="16682" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="413" r_length="273" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="430"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E443364" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443364" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15437" e_stop="15447"/>
          <exon e_start="15629" e_stop="15757"/>
          <exon e_start="16410" e_stop="16682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGATAAGGTACCTCTCCTCGTTTGCAGAAGAGAATTTCTTCCATCTCAAGCTTCTTCTATTTCCCAAACACAATCGTATACGCTATATTGACCAGGTGCATTTGTTTCTTTTGAGTCAAATTGGCGGTACGTGATGATGCTCGTGAATTTTCAAGGGATGATTCACATACATATGAATTTTTTTGCAGGAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACGAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAGGTATGAATCAGCCAAGGGTCTTTCTTGTATATTGTTCATGTTATAGTTTGAATGGACTAGTAAAAATTAAAAAAAGAAAAATAGTTTTGAGTGGACTTGCCAGTGGTCATGAGTTGTTAAAAATAAATGGAGTTACAATGCAACTGAACATTAACAGGGATGTAAGATCTCTACCTTCATTTTAGATGTTTAACTGTCTTCATCGGTGATAACATATCTCGAGTGTACCTAGAGCAGGCCATATCTTAATCATGTCCCATGCATTTCTGGGAGATCTCCTTGTTGAACAGCTGGGCTTTTGCATTCTAGGCAAACATTAAACTGAACCACAGAGACTTTTAACACTAGTGCCATGCTAGAAGAAAGTTCTTTCTTTGTTGGGGAGATGATTGAACTTTGTCAGTCATCTGGCGGTAGTCACTGCAACTTGCCCTGGTTGTTTCCCTGTCCAACATCCTTGCTAGCAAATATTATCTCAATAAATGGTTCAAATATTGCTTCGCGGAACAGAATGCATGCTCTATGAAGTTCAGTTTACATTTTGTCTTCATCTGTAATGTGTTATTGCAATAGTCCCTTTTACTTCCCCTCTCTCTACCGAAGGAGAACATTGCTTAGTCGTGAACTTGTGATGATGAATTTTGGTTTGCAGATTTTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGCGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGACGTTTCTTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGACGAACTCTGTTTCTATCCTTCACGTTTGTAGTTTGTTTGACTGAATGTTCTTCTGTTGTCCTCTTGCTCTTAATTTGATATTTGAAGAAG</genome_strand>
        <mrna_strand>AAGTTGATAAG.....................................................................................................................................................................................GAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACAAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGTGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGATGTTTCGTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGACAAACTCTGTTTCTATCCTTCACGTTTGTAGTTCGTTTGACTGAATGTTCTTCTGTTGTCCTCTTGCTCTTAATTTGATATTTGAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376979" ref_strand="+" ref_description="SGN-E376979 [TUS-20-O15](-)">
      <seq>caaaaaaagacgcgaaactttctcctcgtttgttttgcaacagacttgagcattaaaaatgatgtttgtcgtcaatgctactcagtctgcagataaaagatcctgaagtgaggatgtaggccttgtaactagcttatttttccaactcttccattcttctgttgatcattaaattattcgggtggtcatgtcagttgaagtagtgatcatgaggatttctatggatactctccgcttatagacttgtaatgttgccttcaattgttatgtgatgatgatgaagtgtaaatcacactggcatagtttcttcttctctatttacatgcatctattattgtaggtgttctctatttcacttggcctacttagaattcgtaatccagtatttgttaacgttgtattctcctgactttgttactcatgggactatagtgattatgtttactggtactttctttgacttctgagttgtgattcgatttaattttttttccagagactccatagataaatgttgtacgtaggctgtatgtaaagtcattattcgacttattaggacacactgttacgtttaggtgctatacaaattatatttcttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="19053" stop="17848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18756" g_stop="18148" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E376979" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18756" e_stop="18148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAAGACGCGAAACTTTCTCCTCG-TTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCTATTTACATACATCTATTATTGTAGGTGTTCTCTATTTCACTTGGCCTACTTAGAATTCGTAATCCAGTATTTGTTAACGTTGTATTCTCCTAACTTTGTTACTCATGGGACTATAGTGATTATGTTTACTGGTACTTTCTTTGACTTCTGAGTTGTGATTCGATTTAATTTTTTTTCCAGAGACTCCATAGATAAATGTTGTACGTAGGCTGTATGTAAAGTCATTATTCGACTTATTAGGACACACTGTTACGTTTAGGTGCTATACAAATTATATTTCTTATACAATTAATA</genome_strand>
        <mrna_strand>CAAAAAAAGACGCGAAACTTTCTCCTCGTTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCTATTTACATGCATCTATTATTGTAGGTGTTCTCTATTTCACTTGGCCTACTTAGAATTCGTAATCCAGTATTTGTTAACGTTGTATTCTCCTGACTTTGTTACTCATGGGACTATAGTGATTATGTTTACTGGTACTTTCTTTGACTTCTGAGTTGTGATTCGATTTAATTTTTTTTCCAGAGACTCCATAGATAAATGTTGTACGTAGGCTGTATGTAAAGTCATTATTCGACTTATTAGGACACACTGTTACGTTTAGGTGCTATACAAATTATATTTCTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714685" ref_strand="-" ref_description="SGN-E714685 [FB12AF02]">
      <seq>ttttttttttttttaccagtaaacataatcactatagtcccatgagtaacaaagttaggagaatacaacgttaacaaatactggattacgaattctaagtaggccaagtgaaatagagaacacctacaataatagatgtatgtaaatagagaagaagaaactatgccagtgtgatttacacttcatcatcatcacataacaattgaaggcaacattacaagtctataagcggagagtatccatagaaatcctcatgatcactacttcaactgacatgaccacccgaataatttaatgatcaacagaagaatggaagagttggaaaaataagctagttacaaggcctacatcctcacttcaggatcttttatctgcagactgagtagcattgacgacaaacatcatttttaatgctcaagtctgttgcaaaacaacgaggagaaagtttcgcgtctttttggtttttctttatgtttgtaagtaaaggaaaggtaggcagaccttaaaaggtccattcatgtgctttcaaatcgaacaaccacacaggtgatgttatctgaactcccccttgaataagcttcttcaataagcttacgtgaagctgcctcagcatcttttatgtcctgcacaatggtcacggcctcctcgttagagaggacattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="18008" stop="24483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18308" g_stop="18940" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="646" r_length="633" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18941" i_stop="20535" i_length="1595">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.496" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20536" g_stop="20553" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="664" r_length="18" r_score="0.611"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="13" polyA_stop="1"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E714685" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714685" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18308" e_stop="18940"/>
          <exon e_start="20536" e_stop="20553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAGTAAACATAATCACTATAGTCCCATGAGTAACAAAGTTAGGAGAATACAACGTTAACAAATACTGGATTACGAATTCTAAGTAGGCCAAGTGAAATAGAGAACACCTACAATAATAGATGTATGTAAATAGAGAAGAAGAAACTATGCCAGTGTGATTTACACTTCATCATCATCACATAACAATTGAAGGCAACATTACAAGTCTATAAGCGGAGAGTATCCATAGAAATCCTCATGATCACTACTTCAACTGACATGACCACCCGAATAATTTAATGATCAACAGAAGAATGGAAGAGTTGGAAAAATAAGCTAGTTACAAGGCCTACATCCTCACTTCAGGATCTTTTATCTGCAGACTGAGTAGCATTGACGACAAACATCATTTTTAATGCTCAAGTCTGTTGCAAAACAACGAGGAGAAAGTTTCGCGTCTTTTTGGTTTTTCTTTATGTTTGTAAGTAAAGGAAAGGTAGGCAGACCTTAAAAGGTCCATTCATGTGCTTTCAAATCGAACAACCACACAGGTGATGTTATCTGAACTCCCCCTTGAATAAGCTTCTTCAATAAGCTTACGTGAAGCTGCCTCAGCATCTTTTATGTCCTGCACAATGGTCACGGCCTCCTGTATGTAATGAATAGAAGTTAAACAGTTAATGTTCATAACTGCATGAATCTTTAAGAAAGCAATCAGCAAATAACAACATACTAGACACATCAGCAAAGCTTTCAAGCGAAGCACTATGAAGCTACTCTGTAATGTCCTAACAATCATGAAACTAGAATCAAAGAAGAAGCTTAGTATATTAAGAAAGAAAAACTTCCCTGGTTTATTATTTTCTTCTAACTTTATAAATAAGGAAAGGGTAAAAAGCCTCACACAAGCTCTAGAAATCAACACTAATCAAACTTGAGCTTGCCTAAGCAAAGAAGCATTACATCAAGCTCTAAGCCTATGAACCAATTCTGGCCAATTCTTCTGAGCATAATAGTTCCCACTTTCATCAAACTCCCAAAATAGTGAATACATTAGCAAGTCTTTTCCCCTCAATTTCAACCTCAAACCTACGAAAATTTAAAGCTCAACTTGGAATTACAAAACTGAGTTCCTGATCACTAATGAACTTAGAGAAGATTTTCATCTCTTTTTTGATGTTCCTACCTTTTAATGACAAGCTCCAGGTTGAAACAAAGACCGAAGAAATAAAAGAAACCCATGTATGAGCCATTCAAATTCAGTCCAGGTTCTGAGGTTTCAAATGGAGATGTCTGGATTAATCATCCACCTCAGAGCATCCTCGGTCACCTCCTTCCACCCATCAAATTTATACTCTGTCCCTCCTTTTTAATGTGACATTGTTTGACAATGCAAGGAATTTGAAATTTAAAAAAATTACACTAAATCTATGTACAAGGTCCCAAAAGCCCCTTATTTAAATTGAATGCGGTAAGAGTTCCACGTGTCACTTCTTATTTCTCTTTAATAAAAGATCAGTTTTTGTATCAAGTTGGTTCCAACCAAGTAACATCAGGAAGAAAAGCAAAAAATAAGGTTAGTTACACTAAGTACCCCCATAATATTCAGTTTAGGATACAACCTTTTTACCTTCACAAGGTAAGACAAGGTCTGCATATACACCATCCTCCCTAAACCCCACCCGTTGAATTACACAGGGTATGTTTTGTTGTTGTACACCCCTTGTACTATGAAAATCATACACTTAAATCTCATACGAGGTATATTATTAACTAAGTATATTAAAATATAATTATTAAAAGGTAACTTAAAATTATAAATACCACAAATTACCTAATAAGAAATATCACTTATTACTACAATCTTCTTGCACTTTAAACATGTAACTTATTTGTATGTTTATTTAATTTTAATATTTTTATTATATTATATACAAATTTCTTCTTTTTATTTTTGTTTTGTTTATTCTCTGCTTCAAAATTCTTATGTTAATTTACTTAGATAAAGTATCGTTTGTGTAGGATTTCTATTAGGGAAAAGAGTCTGAAAAATACTTCAACTTTGGCTCAAATTGTTGTTGCGATACCGAACTTTATAGAGACCTTTTACCCCTGCACTATTTAATAGTGTATTTTAAAAGTATATATGTGCTCACGTGGACAAATTACTATTTACAATTATGCAATATTTTTTATGTCCACGTGGACAAATATATACCTTTAAAATACACTATTAAATAGTGCAGGGCTAAAAGGTACTTTCC</genome_strand>
        <mrna_strand>TACCAGTAAACATAATCACTATAGTCCCATGAGTAACAAAGTTAGGAGAATACAACGTTAACAAATACTGGATTACGAATTCTAAGTAGGCCAAGTGAAATAGAGAACACCTACAATAATAGATGTATGTAAATAGAGAAGAAGAAACTATGCCAGTGTGATTTACACTTCATCATCATCACATAACAATTGAAGGCAACATTACAAGTCTATAAGCGGAGAGTATCCATAGAAATCCTCATGATCACTACTTCAACTGACATGACCACCCGAATAATTTAATGATCAACAGAAGAATGGAAGAGTTGGAAAAATAAGCTAGTTACAAGGCCTACATCCTCACTTCAGGATCTTTTATCTGCAGACTGAGTAGCATTGACGACAAACATCATTTTTAATGCTCAAGTCTGTTGCAAAACAACGAGGAGAAAGTTTCGCGTCTTTTTGGTTTTTCTTTATGTTTGTAAGTAAAGGAAAGGTAGGCAGACCTTAAAAGGTCCATTCATGTGCTTTCAAATCGAACAACCACACAGGTGATGTTATCTGAACTCCCCCTTGAATAAGCTTCTTCAATAAGCTTACGTGAAGCTGCCTCAGCATCTTTTATGTCCTGCACAATGGTCACGGCCTCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTAGAGAGGACATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347040" ref_strand="+" ref_description="SGN-E347040 [cTOF-25-D15]">
      <seq>ctgtttctcgtgcatttggagataaaatgctaaagccatatgttgtggcagacccagagattcaggaagaagaaattgatggtgtacaatttttgatagttgcgagtgatgggctttggaatgtcctctctaacgaggaggccgtgaccattgtgcaggacataaaagatgctgaggcagcttcacgtaagcttattgaagaagcttattcaagggggagttcagataacatcacctgtgtggttgttcgatttgaaagcacatgaatggaccttttaaggtctgcctacctttcctttacttacaaacataaagaaaaaccaaaaagacgcgaaactttctcctcgttgttttgcaacagacttgagcattaaaaatgatgtttgtcgtcaatgctactcagtctgcagataaaagatcctgaagtgaggatgtaggccttgtaactagcttatttttccaactcttccattcttctgttgatcattaaattattcgggtggtcatgtcagttgaagtagtgatcatgaggatttctatggatactctccgcttatagacttgtaatgttgccttcaattgttatgtgatgatgatgaagtgtaaatcacactggcatagtttcttcttctctatnacatgcatctattattggangtgttctctatttcacttggcctacttagaattcgtaatccagtatttgnttacgntgtattctcctgactttgttactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="26858" stop="18035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26558" g_stop="26494" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26493" i_stop="24236" i_length="2258">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24235" g_stop="24164" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="137" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24163" i_stop="18939" i_length="5225">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18938" g_stop="18335" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="740" r_length="603" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E347040" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26558" e_stop="26494"/>
          <exon e_start="24235" e_stop="24164"/>
          <exon e_start="18938" e_stop="18335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAGGTAACTCGGCTTTGTTTCTTGAAGCAATAGTTTGTCTTCATTTGCTGCTCTAATTGCCTGATCTGTCAAGGCACAAGAACATGGTGTTAATCTAGACGTACGGTTCTCCGCTGTCCCCTTGTGATATATTACTGGAAAAGGAAATTTTAAATTTTAAAGAAATCTATGGTGTCTTATTAGCTTCTTTAACACAACAACAACAACATGAAATTTCACAAGTGGTGGTCTGGGTAGTGTGTTGTGTATGCAATGTCACTCACCTTTTTAAGGTAGAAAGTCTATGTTTGGTAGACCCTTGACTCAAGTAAAACATATAAAAATAGGTAAGAGATAATACAGTAAAGAAGAAGCTGTGTTAAATAATGGGGAAAAGAACAGTAGTAATAACAACAGATAATGCAACAATCGAAGTAAAGGAAACAACAAGTAATAATAAATTGAAGAAACCCTTCGAGGTGACCCAGAGGTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAATGAAAGCAAGGGGTTTGCCTTCTGGGTCAAGCTCGTCGCACTACGGCTTGTCAAGTGCGGGTTACCTCTCTCGTGTGGTTTGCGAGCTATTGCATACGAGCAGGTGTTTTGCCCTGTGCACCCAAGGGGTAGCGACGGCGAGTTTCCCTTGTCATAAAAGTTAAATAATAAAATTGAAGATAAGAAAGTAGGAGGAAAATGCTGATAATACTTATAAGGGAACTAAACTACGCATGATTAATTACTAAACTTCTACCTTAATTTCGACCTTCATATCTTTCTATCTAGACTCATGCCCTCGGTAAGCTGAGGGTAGTGTTCAGCAAAGCAAGTGCTTCATTGCTTTAAGTGGTGAACCGAAACGAAGTGAAGCGAGGCATGTGAAAAGAAGCATCCGCTTTTGGGCTTGAAGCATGGTGCTACCAGAAGCGGCAACTCGAGAAAAACAGCGGTTTTATTTTTTTTGACTTAATTATTGACCGATTTTAAAGGATAAAAAGAGGCGTGACTGGCCTTGTCCTTAAGAAAGTAGAACAGTAAGGTATCAGTGTACTCTTTCCTTCCAGTACCTTTTCTCTTTTCTTTTTTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTGGTACAGTGGCATTGCTAGCCTAGGTTTTTTCTTCTCTCTGTTTTTCTTTTCCCTGTTTAGCTTTGATTATTTGAATTATATGTTGCTAATTTTTTCTTCACATTGATTAAATCATCTGTTGCTGAATTGTTTTGTTTCATAACAATGTCTAAAATGTTGTTGAATTGTTTCTTAATACTTAATAGTGATAAAAATATATTGTTGATTATATTCTTAAGTCTTATCTGCCGTTAGAAATGGCTGACCCAACATGAAAATATGGGAAAAGAAGTTAGTAAGACCAATAAGACAAATTGTATGTCAGTCTGTCTATTTGGTGACAAGACAACTAATGGGGAACCTTTTCCTAGTTTTTAATATGAATATTTGCTTATATATTTTGTCTTTATGTATTTTGGTCTTTTTTCTTTTAAATTGTGCTTCACTTCAATGAAGCGAGACCTTACCGCTTTTTACTGCTTCCGCTCCCCTACACACTAGCTGAGGGTGTATCATATCCCCCCGCCCCCTGAATCAGTTGTATGAAAATTGAATAGTGACAAGTACATTGCTCTGGGACTGTGATGAAGTTTAAAAGAGGGAAGAAACGAAGGAAGTTTAAAATAGAATACACAGCCTTAATCTTCCTTTTCCTCCTGTTCCACCACAGTTAATTAGATGATACTATAACCATTGCACAAAACGTGTTGCTATTTTGTCCCACGATTGTAGATGGAAGAATGATATGTTTGCATAGAGGTTTGACAGTTCCTATCCAAGGACTGACAGTAGACAAGTATCTCAATAAGAAAATGTTTGAGATGGTACATTGCACTTATACACATAAGCATACAAGGGGAAACTGGCATTCAGTTGTATCTTTTATGTCCATTTTTTTGCAGCTAAAGTATTTTAGGTCTCATATTCATGCTGTATTTTTCTTAGCACATCTTGTCCCTTTGATTTGGTTGTTTTATTATGATACCGTAACTCAGTAGTTTTATTGAACTGAAATATTTCTATGCACATCTCTTCCCTCTCCTCTCTCTCCCTCTCTCTTGTATAATTAGCTTCCATTGTTAATTGACTTGTATTGATGGTGAGTGCACTGCTGTTTGATCTCCTTTTCAGGAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAGGTCAGGTTTCTTTTAGTAAATTTGGTGAACCTTTCTTGTTTTTTCAACACTAACCAATTTTCCTCAACTTAAAAAGTCTTAGTAAGACGACAATGCTCATGGAGTTAGATGTCTTGATTGCATAATTTAGTTCGGCTTCTTACCTAGATGTTCTAGCTTTTATCTAATTTCTGACTTGCATTACTTATCGTAAGAAAAGTACAGAACAAGAAAAAGATAAGCTGCAGAATTGCCTTCCTTTAGTAAGGTACTTGCTACTCCTTACAAATAGGAGGAAGGCCAATGATGCAGGACTCGAGGGGCCAACAGTCGAGTATCTTTCATGCATTAATGTTCTTGCTACAATAATAAAAAATCAAGTATCCTTCATGCAGTAGTTTTCTTGCTACAGTAACTGTATCTCGTTCATCTAGATCTTGGGTTTTATTTATGTAATTTTTTCTTAAATTTTCTTACAGGACTTATTTGGTTATTTCTTTTCCTTATAGGAAAGACTGGGTGCACTAGATCCAATGTGATCCGGTCCTTACCTAGAGTCTAGAGTCTACGTATATTGGGAGCTTAGTCTCAAGCTTTCATTTCTTTCCACTTGGGAATTTCTTTGTTGACAAGAATTTGGAGTCGTAGTTGTTTAGAATTAGGGTTCTTGGATTTGTTTCCTCATAAATAAAAGTAGATACAATAATGTCAGCATTCAACTTTTTGTTTATAATAATGCTGGACTATTGACATGGTACCTGTGCTGGGAGGTAGGAGGTACCATGTGGAATTATTAGTTTAGATGCACTGATGCTGGCTAGGACACAACAATTAATAGAAAAACGGATAAGGGTAAAAAATGTCCTTAAACTATGCTAAATTGAACAAAAATGCCCTGTGTTAATAGTTTGATCCTAAATTCCCCTATTGTTACTTTTGGGTAAAAACTGTCATTTTCCTGATAAATAGGATGTTTCTTTTCTTTGTAAACACATTGCTTACCTAATAAAATATTATTTTTAAAGGACCTTTTTCTTTTCTTTTGTCCTTTAAAAATTCAACTAATATAAAAGTAGAAACTAATTTTTTCCTTCTTAATCTCCTTTTTTAAATAAAAAAGAGAATTACCCTACATGTGATTTTCCTCTAAGGCATGTATTTATCAAGCATTGCCTCAGACCATCCAGGATGATGCAAATAGACGTAGAGGATAAGTGGTCATAGAAGAAAAATTAGCAATGGAATATATAGATTTGCAAGTACTGTACCTTTGCAAAGATATGATGACAAAGGAACTGGCATACGACATGTTTCATTGGTCTCTCTCATCCTCGAGTAAACTTGAACAGTTGGCGGTCTTGCTAGCACAAATGAGCAAGCGCAATAGTCGATTGGTGTTCAGTAAAAGAACAAGTAGACGAAGGAGCATCATCTAATTGTTCTGTTAAAGCATAGGTAAATTGATTGACTACCCACTCATTTTCCTCCTCCTAACTAGTAGAAATGGGGAGGTGCATCTCTGAAAATACCATTTCGGTTGACACCAAATATTTGCTGAGTTTGGTATAATGACGCCGATACCCGTTCTGAAGTTGAGAATAGCCAAGGAGAACACATTTCAATGCCATGGAAACCAAATTGGTAATAGCTTGTCGAGCATCTTGGAAATATCATGTACTTCCAAATACCTTAGGTTCCACTGGAAATAGGGACTTGTTGGGGAGTCGAACACTTAAGGCATGTTATCAACAAGTGCACTAGGTGGGATGCAATTAATTAAAAAGTTAAGTTGTAGAGACTGCATCTGTCCAAATTGTTTAGAAACCTTCATTTGGATTAGAAGTACCTTAGTTGTCTCAAGTAAATTCCTATTTTTCCTCTTAGCAACTCTATTTGAGATGGTGTATAATACATGAAGACTGATGGTGAATTCCGTGTTGTCTCATGAATGATAGAAACAATTATGGCATGTATTCTCTGGCATTATCACTCCTTAGAATAAGCAGTGAAGCATTGATTTGAGTTTTGATTTCAGCATGGGAGGCACAAAAGTGAGTAAACACTTCGAAACGACTCTTCATAAAATAAATCCAAGACATTTGAGAGAAATCGTTCACAAAGTAACAAATATATATGCCCTGTTTTGGAAACAATAGGACAGTCCCCAAACATCAAAATGAACTAATTCAAAAGCTGACTCAACTAGCTTATTAATCTTGGACCTACTGAGGTGCAACAGTGTTTTACAAATTCACATGACTTATTGTCTAAGAAGAAACATTCTGAAACTTGGGACGACTTTAATGTAGGCAAAGAAGGATCGCTTCGCCGATGATATGCTTCAAATGGAAACACACCATAGGAGTAGGCACCAAACCGAGGCTCCCACTTATTAAAAATATGAAGATCATCAGATGTATGTCCCTTACCAATTACTTGATTTGTCGTAAGATGATGAGACAAACAATGATCGGGAAAGAATGAGATATAGCAATTGAGTTCTCTTAATGATGGTTAATTTTATGTTGGGGATAGAGACCTAGTCGTTTGAGGTTATAAGTGTTGAAGAAGACAATGTTGTTAATTCTGAAAAAAGAAGACAGTGTTGTTGTTGGAATAGTAACCCTGTCCTTATATAAGCACAAGGCAAATATGGGTCATTTCACATAATTCAAGGGCTTATTGAACTCTTTTCTTTTTGTCAAAAATGTCCACGTGCTGGTAAGCATTATTTGTTGGTTAAAAAGGGCAAATCTAACCCCTTTTTACAATGATAGGGGTATATCTAACACCCCTACCACTAATGATGTTCAAATTTAGACCATTTTGCCAAGTTTAGGGGCAAATTTGGATCTTTTCACTTTTATTATTGAGTTCTAGAATATATTCAACTTGTTTGAATCTTAAAGAATTATGATTACTGTGAGGAGACACAACCCCAATTTTCAATCAACATATGCTAGTAAATCATGTCTTTTAAAAGATAATATTGCACTACTTTTCTACCCTTTTGCGTCACACTTTTATTTTTAGGATGTTCAAAAGAACAAAACCATTAAATATTTGGAAACTATTAAACATTAGTATTTTAAGCGTTAATTGCACTAAATACCCCTGTTAATGTGATTTCCTCTTGGATGCACCTCTGTATTTTAAAATTGAACACTTACAACCGTCTTAGGAGGTATATCCTTAACTATACTTGCACGTCTTAGGAGGTATATTTGTAACTAAGTATATTAAAATAGACAAACTGAAATTATAAATAAAAAGTTTTTATGTATTTATGAAATTTGAAAAGTGGATAATTCTTTTTATTGAAAATATTTATTCATGCCTTAAATTAAAAGAGAATTTTTATTTTCTTTAAATATGCATCTTTTTAAACTCTTAGATAAGAAATGACCACAAATTACTTAATAGGATGAATAAATTTTGACATAATTATTTTCTCTTTTTTTAAAAAAAGAACTATGGCAAAAAAGTTTTCATCTTTCAAGCAATTAAAATATAATGATGATATCTCAATTTCTTTTTTTGACATTTAAACCTACTATATATAATAGTAAGGGAAAAAGGTCGGAAATATATCTGAACTTTGACCGAAATTGTTGTAATGATACTAGACATTGGAAAGTACCTTTTAGCCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATTTGTCCACGTGGACATAAAAAATATTGCATAATTGTAAATAGTAATTTGTCCACGTGAGCACATATATACTTTTAAAATACACTATTAAATAGTGCAGGGGTAAAAGGTCTCTATAAAGTTCGGTATCGCAACAACAATTTGAGCCAAAGTTGAAGTATTTTTCAGACTCTTTTCCCTAATAGAAATCCTACACAAACGATACTTTATCTAAGTAAATTAACATAAGAATTTTGAAGCAGAGAATAAACAAAACAAAAATAAAAAGAAGAAATTTGTATATAATATAATAAAAATATTAAAATTAAATAAACATACAAATAAGTTACATGTTTAAAGTGCAAGAAGATTGTAGTAATAAGTGATATTTCTTATTAGGTAATTTGTGGTATTTATAATTTTAAGTTACCTTTTAATAATTATATTTTAATATACTTAGTTAATAATATACCTCGTATGAGATTTAAGTGTATGATTTTCATAGTACAAGGGGTGTACAACAACAAAACATACCCTGTGTAATTCAACGGGTGGGGTTTAGGGAGGATGGTGTATATGCAGACCTTGTCTTACCTTGTGAAGGTAAAAAGGTTGTATCCTAAACTGAATATTATGGGGGTACTTAGTGTAACTAACCTTATTTTTTGCTTTTCTTCCTGATGTTACTTGGTTGGAACCAACTTGATACAAAAACTGATCTTTTATTAAAGAGAAATAAGAAGTGACACGTGGAACTCTTACCGCATTCAATTTAAATAAGGGGCTTTTGGGACCTTGTACATAGATTTAGTGTAATTTTTTTAAATTTCAAATTCCTTGCATTGTCAAACAATGTCACATTAAAAAGGAGGGACAGAGTATAAATTTGATGGGTGGAAGGAGGTGACCGAGGATGCTCTGAGGTGGATGATTAATCCAGACATCTCCATTTGAAACCTCAGAACCTGGACTGAATTTGAATGGCTCATACATGGGTTTCTTTTATTTCTTCGGTCTTTGTTTCAACCTGGAGCTTGTCATTAAAAGGTAGGAACATCAAAAAAGAGATGAAAATCTTCTCTAAGTTCATTAGTGATCAGGAACTCAGTTTTGTAATTCCAAGTTGAGCTTTAAATTTTCGTAGGTTTGAGGTTGAAATTGAGGGGAAAAGACTTGCTAATGTATTCACTATTTTGGGAGTTTGATGAAAGTGGGAACTATTATGCTCAGAAGAATTGGCCAGAATTGGTTCATAGGCTTAGAGCTTGATGTAATGCTTCTTTGCTTAGGCAAGCTCAAGTTTGATTAGTGTTGATTTCTAGAGCTTGTGTGAGGCTTTTTACCCTTTCCTTATTTATAAAGTTAGAAGAAAATAATAAACCAGGGAAGTTTTTCTTTCTTAATATACTAAGCTTCTTCTTTGATTCTAGTTTCATGATTGTTAGGACATTACAGAGTAGCTTCATAGTGCTTCGCTTGAAAGCTTTGCTGATGTGTCTAGTATGTTGTTATTTGCTGATTGCTTTCTTAAAGATTCATGCAGTTATGAACATTAACTGTTTAACTTCTATTCATTACATACAGGAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCTATTTACATACATCTATTATTGTAGGTGTTCTCTATTTCACTTGGCCTACTTAGAATTCGTAATCCAGTATTTGTTAACGTTGTATTCTCCTAACTTTGTTACTCATG</genome_strand>
        <mrna_strand>CTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCTA-TNACATGCATCTATTATTGGANGTGTTCTCTATTTCACTTGGCCTACTTAGAATTCGTAATCCAGTATTTGNTTACGNTGTATTCTCCTGACTTTGTTACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615976" ref_strand="+" ref_description="SGN-E615976 [65780]">
      <seq>ggcgtgtaggtggggtccttgctgtttctcgtgcatttggagataaaatgctaaagccatatgttgtggcagacccagagattcaggaagaagaaattgatggtgtagaatttttgatagttgcgagtgatgggctttggaatgtcctgtctaacgaggaggccgtgacccttgtgcaggacataaaagatgctgaggcagcttcacgtaggcttattgaagaagcttattcaagggggagttcagataacatcacctgtgtggttgttcgatttgagagcgcatgaatggaccttttaaggtctgcctacctttcctttacttacaaacataaagaaaaaccaaaaagacacggaaactttctcctctgttgttttgcaacagacttaagcattaagaatgatgtttgtcgtcaatgctattcactctgcagataaaagatcccgaagggaagatgtaggtaggccttgtaactagcttatttttccaactttgccattcttctattgatcattaagttattcggatggtcatgtcagttgaagtagtggtcatggggatttctatggatggtctcctcttatagacttgtaatgttgccttcaattgttatgtgatgacgaagtgtaaatcacactggcaggtcttttctttctctatttacatatagttattatgataggtgtctctatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="26879" stop="18158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26579" g_stop="26494" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26493" i_stop="24236" i_length="2258">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24235" g_stop="24164" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="158" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24163" i_stop="18939" i_length="5225">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18938" g_stop="18404" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="695" r_length="537" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E615976" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26579" e_stop="26494"/>
          <exon e_start="24235" e_stop="24164"/>
          <exon e_start="18938" e_stop="18404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAGGTAACTCGGCTTTGTTTCTTGAAGCAATAGTTTGTCTTCATTTGCTGCTCTAATTGCCTGATCTGTCAAGGCACAAGAACATGGTGTTAATCTAGACGTACGGTTCTCCGCTGTCCCCTTGTGATATATTACTGGAAAAGGAAATTTTAAATTTTAAAGAAATCTATGGTGTCTTATTAGCTTCTTTAACACAACAACAACAACATGAAATTTCACAAGTGGTGGTCTGGGTAGTGTGTTGTGTATGCAATGTCACTCACCTTTTTAAGGTAGAAAGTCTATGTTTGGTAGACCCTTGACTCAAGTAAAACATATAAAAATAGGTAAGAGATAATACAGTAAAGAAGAAGCTGTGTTAAATAATGGGGAAAAGAACAGTAGTAATAACAACAGATAATGCAACAATCGAAGTAAAGGAAACAACAAGTAATAATAAATTGAAGAAACCCTTCGAGGTGACCCAGAGGTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAATGAAAGCAAGGGGTTTGCCTTCTGGGTCAAGCTCGTCGCACTACGGCTTGTCAAGTGCGGGTTACCTCTCTCGTGTGGTTTGCGAGCTATTGCATACGAGCAGGTGTTTTGCCCTGTGCACCCAAGGGGTAGCGACGGCGAGTTTCCCTTGTCATAAAAGTTAAATAATAAAATTGAAGATAAGAAAGTAGGAGGAAAATGCTGATAATACTTATAAGGGAACTAAACTACGCATGATTAATTACTAAACTTCTACCTTAATTTCGACCTTCATATCTTTCTATCTAGACTCATGCCCTCGGTAAGCTGAGGGTAGTGTTCAGCAAAGCAAGTGCTTCATTGCTTTAAGTGGTGAACCGAAACGAAGTGAAGCGAGGCATGTGAAAAGAAGCATCCGCTTTTGGGCTTGAAGCATGGTGCTACCAGAAGCGGCAACTCGAGAAAAACAGCGGTTTTATTTTTTTTGACTTAATTATTGACCGATTTTAAAGGATAAAAAGAGGCGTGACTGGCCTTGTCCTTAAGAAAGTAGAACAGTAAGGTATCAGTGTACTCTTTCCTTCCAGTACCTTTTCTCTTTTCTTTTTTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTGGTACAGTGGCATTGCTAGCCTAGGTTTTTTCTTCTCTCTGTTTTTCTTTTCCCTGTTTAGCTTTGATTATTTGAATTATATGTTGCTAATTTTTTCTTCACATTGATTAAATCATCTGTTGCTGAATTGTTTTGTTTCATAACAATGTCTAAAATGTTGTTGAATTGTTTCTTAATACTTAATAGTGATAAAAATATATTGTTGATTATATTCTTAAGTCTTATCTGCCGTTAGAAATGGCTGACCCAACATGAAAATATGGGAAAAGAAGTTAGTAAGACCAATAAGACAAATTGTATGTCAGTCTGTCTATTTGGTGACAAGACAACTAATGGGGAACCTTTTCCTAGTTTTTAATATGAATATTTGCTTATATATTTTGTCTTTATGTATTTTGGTCTTTTTTCTTTTAAATTGTGCTTCACTTCAATGAAGCGAGACCTTACCGCTTTTTACTGCTTCCGCTCCCCTACACACTAGCTGAGGGTGTATCATATCCCCCCGCCCCCTGAATCAGTTGTATGAAAATTGAATAGTGACAAGTACATTGCTCTGGGACTGTGATGAAGTTTAAAAGAGGGAAGAAACGAAGGAAGTTTAAAATAGAATACACAGCCTTAATCTTCCTTTTCCTCCTGTTCCACCACAGTTAATTAGATGATACTATAACCATTGCACAAAACGTGTTGCTATTTTGTCCCACGATTGTAGATGGAAGAATGATATGTTTGCATAGAGGTTTGACAGTTCCTATCCAAGGACTGACAGTAGACAAGTATCTCAATAAGAAAATGTTTGAGATGGTACATTGCACTTATACACATAAGCATACAAGGGGAAACTGGCATTCAGTTGTATCTTTTATGTCCATTTTTTTGCAGCTAAAGTATTTTAGGTCTCATATTCATGCTGTATTTTTCTTAGCACATCTTGTCCCTTTGATTTGGTTGTTTTATTATGATACCGTAACTCAGTAGTTTTATTGAACTGAAATATTTCTATGCACATCTCTTCCCTCTCCTCTCTCTCCCTCTCTCTTGTATAATTAGCTTCCATTGTTAATTGACTTGTATTGATGGTGAGTGCACTGCTGTTTGATCTCCTTTTCAGGAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAGGTCAGGTTTCTTTTAGTAAATTTGGTGAACCTTTCTTGTTTTTTCAACACTAACCAATTTTCCTCAACTTAAAAAGTCTTAGTAAGACGACAATGCTCATGGAGTTAGATGTCTTGATTGCATAATTTAGTTCGGCTTCTTACCTAGATGTTCTAGCTTTTATCTAATTTCTGACTTGCATTACTTATCGTAAGAAAAGTACAGAACAAGAAAAAGATAAGCTGCAGAATTGCCTTCCTTTAGTAAGGTACTTGCTACTCCTTACAAATAGGAGGAAGGCCAATGATGCAGGACTCGAGGGGCCAACAGTCGAGTATCTTTCATGCATTAATGTTCTTGCTACAATAATAAAAAATCAAGTATCCTTCATGCAGTAGTTTTCTTGCTACAGTAACTGTATCTCGTTCATCTAGATCTTGGGTTTTATTTATGTAATTTTTTCTTAAATTTTCTTACAGGACTTATTTGGTTATTTCTTTTCCTTATAGGAAAGACTGGGTGCACTAGATCCAATGTGATCCGGTCCTTACCTAGAGTCTAGAGTCTACGTATATTGGGAGCTTAGTCTCAAGCTTTCATTTCTTTCCACTTGGGAATTTCTTTGTTGACAAGAATTTGGAGTCGTAGTTGTTTAGAATTAGGGTTCTTGGATTTGTTTCCTCATAAATAAAAGTAGATACAATAATGTCAGCATTCAACTTTTTGTTTATAATAATGCTGGACTATTGACATGGTACCTGTGCTGGGAGGTAGGAGGTACCATGTGGAATTATTAGTTTAGATGCACTGATGCTGGCTAGGACACAACAATTAATAGAAAAACGGATAAGGGTAAAAAATGTCCTTAAACTATGCTAAATTGAACAAAAATGCCCTGTGTTAATAGTTTGATCCTAAATTCCCCTATTGTTACTTTTGGGTAAAAACTGTCATTTTCCTGATAAATAGGATGTTTCTTTTCTTTGTAAACACATTGCTTACCTAATAAAATATTATTTTTAAAGGACCTTTTTCTTTTCTTTTGTCCTTTAAAAATTCAACTAATATAAAAGTAGAAACTAATTTTTTCCTTCTTAATCTCCTTTTTTAAATAAAAAAGAGAATTACCCTACATGTGATTTTCCTCTAAGGCATGTATTTATCAAGCATTGCCTCAGACCATCCAGGATGATGCAAATAGACGTAGAGGATAAGTGGTCATAGAAGAAAAATTAGCAATGGAATATATAGATTTGCAAGTACTGTACCTTTGCAAAGATATGATGACAAAGGAACTGGCATACGACATGTTTCATTGGTCTCTCTCATCCTCGAGTAAACTTGAACAGTTGGCGGTCTTGCTAGCACAAATGAGCAAGCGCAATAGTCGATTGGTGTTCAGTAAAAGAACAAGTAGACGAAGGAGCATCATCTAATTGTTCTGTTAAAGCATAGGTAAATTGATTGACTACCCACTCATTTTCCTCCTCCTAACTAGTAGAAATGGGGAGGTGCATCTCTGAAAATACCATTTCGGTTGACACCAAATATTTGCTGAGTTTGGTATAATGACGCCGATACCCGTTCTGAAGTTGAGAATAGCCAAGGAGAACACATTTCAATGCCATGGAAACCAAATTGGTAATAGCTTGTCGAGCATCTTGGAAATATCATGTACTTCCAAATACCTTAGGTTCCACTGGAAATAGGGACTTGTTGGGGAGTCGAACACTTAAGGCATGTTATCAACAAGTGCACTAGGTGGGATGCAATTAATTAAAAAGTTAAGTTGTAGAGACTGCATCTGTCCAAATTGTTTAGAAACCTTCATTTGGATTAGAAGTACCTTAGTTGTCTCAAGTAAATTCCTATTTTTCCTCTTAGCAACTCTATTTGAGATGGTGTATAATACATGAAGACTGATGGTGAATTCCGTGTTGTCTCATGAATGATAGAAACAATTATGGCATGTATTCTCTGGCATTATCACTCCTTAGAATAAGCAGTGAAGCATTGATTTGAGTTTTGATTTCAGCATGGGAGGCACAAAAGTGAGTAAACACTTCGAAACGACTCTTCATAAAATAAATCCAAGACATTTGAGAGAAATCGTTCACAAAGTAACAAATATATATGCCCTGTTTTGGAAACAATAGGACAGTCCCCAAACATCAAAATGAACTAATTCAAAAGCTGACTCAACTAGCTTATTAATCTTGGACCTACTGAGGTGCAACAGTGTTTTACAAATTCACATGACTTATTGTCTAAGAAGAAACATTCTGAAACTTGGGACGACTTTAATGTAGGCAAAGAAGGATCGCTTCGCCGATGATATGCTTCAAATGGAAACACACCATAGGAGTAGGCACCAAACCGAGGCTCCCACTTATTAAAAATATGAAGATCATCAGATGTATGTCCCTTACCAATTACTTGATTTGTCGTAAGATGATGAGACAAACAATGATCGGGAAAGAATGAGATATAGCAATTGAGTTCTCTTAATGATGGTTAATTTTATGTTGGGGATAGAGACCTAGTCGTTTGAGGTTATAAGTGTTGAAGAAGACAATGTTGTTAATTCTGAAAAAAGAAGACAGTGTTGTTGTTGGAATAGTAACCCTGTCCTTATATAAGCACAAGGCAAATATGGGTCATTTCACATAATTCAAGGGCTTATTGAACTCTTTTCTTTTTGTCAAAAATGTCCACGTGCTGGTAAGCATTATTTGTTGGTTAAAAAGGGCAAATCTAACCCCTTTTTACAATGATAGGGGTATATCTAACACCCCTACCACTAATGATGTTCAAATTTAGACCATTTTGCCAAGTTTAGGGGCAAATTTGGATCTTTTCACTTTTATTATTGAGTTCTAGAATATATTCAACTTGTTTGAATCTTAAAGAATTATGATTACTGTGAGGAGACACAACCCCAATTTTCAATCAACATATGCTAGTAAATCATGTCTTTTAAAAGATAATATTGCACTACTTTTCTACCCTTTTGCGTCACACTTTTATTTTTAGGATGTTCAAAAGAACAAAACCATTAAATATTTGGAAACTATTAAACATTAGTATTTTAAGCGTTAATTGCACTAAATACCCCTGTTAATGTGATTTCCTCTTGGATGCACCTCTGTATTTTAAAATTGAACACTTACAACCGTCTTAGGAGGTATATCCTTAACTATACTTGCACGTCTTAGGAGGTATATTTGTAACTAAGTATATTAAAATAGACAAACTGAAATTATAAATAAAAAGTTTTTATGTATTTATGAAATTTGAAAAGTGGATAATTCTTTTTATTGAAAATATTTATTCATGCCTTAAATTAAAAGAGAATTTTTATTTTCTTTAAATATGCATCTTTTTAAACTCTTAGATAAGAAATGACCACAAATTACTTAATAGGATGAATAAATTTTGACATAATTATTTTCTCTTTTTTTAAAAAAAGAACTATGGCAAAAAAGTTTTCATCTTTCAAGCAATTAAAATATAATGATGATATCTCAATTTCTTTTTTTGACATTTAAACCTACTATATATAATAGTAAGGGAAAAAGGTCGGAAATATATCTGAACTTTGACCGAAATTGTTGTAATGATACTAGACATTGGAAAGTACCTTTTAGCCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATTTGTCCACGTGGACATAAAAAATATTGCATAATTGTAAATAGTAATTTGTCCACGTGAGCACATATATACTTTTAAAATACACTATTAAATAGTGCAGGGGTAAAAGGTCTCTATAAAGTTCGGTATCGCAACAACAATTTGAGCCAAAGTTGAAGTATTTTTCAGACTCTTTTCCCTAATAGAAATCCTACACAAACGATACTTTATCTAAGTAAATTAACATAAGAATTTTGAAGCAGAGAATAAACAAAACAAAAATAAAAAGAAGAAATTTGTATATAATATAATAAAAATATTAAAATTAAATAAACATACAAATAAGTTACATGTTTAAAGTGCAAGAAGATTGTAGTAATAAGTGATATTTCTTATTAGGTAATTTGTGGTATTTATAATTTTAAGTTACCTTTTAATAATTATATTTTAATATACTTAGTTAATAATATACCTCGTATGAGATTTAAGTGTATGATTTTCATAGTACAAGGGGTGTACAACAACAAAACATACCCTGTGTAATTCAACGGGTGGGGTTTAGGGAGGATGGTGTATATGCAGACCTTGTCTTACCTTGTGAAGGTAAAAAGGTTGTATCCTAAACTGAATATTATGGGGGTACTTAGTGTAACTAACCTTATTTTTTGCTTTTCTTCCTGATGTTACTTGGTTGGAACCAACTTGATACAAAAACTGATCTTTTATTAAAGAGAAATAAGAAGTGACACGTGGAACTCTTACCGCATTCAATTTAAATAAGGGGCTTTTGGGACCTTGTACATAGATTTAGTGTAATTTTTTTAAATTTCAAATTCCTTGCATTGTCAAACAATGTCACATTAAAAAGGAGGGACAGAGTATAAATTTGATGGGTGGAAGGAGGTGACCGAGGATGCTCTGAGGTGGATGATTAATCCAGACATCTCCATTTGAAACCTCAGAACCTGGACTGAATTTGAATGGCTCATACATGGGTTTCTTTTATTTCTTCGGTCTTTGTTTCAACCTGGAGCTTGTCATTAAAAGGTAGGAACATCAAAAAAGAGATGAAAATCTTCTCTAAGTTCATTAGTGATCAGGAACTCAGTTTTGTAATTCCAAGTTGAGCTTTAAATTTTCGTAGGTTTGAGGTTGAAATTGAGGGGAAAAGACTTGCTAATGTATTCACTATTTTGGGAGTTTGATGAAAGTGGGAACTATTATGCTCAGAAGAATTGGCCAGAATTGGTTCATAGGCTTAGAGCTTGATGTAATGCTTCTTTGCTTAGGCAAGCTCAAGTTTGATTAGTGTTGATTTCTAGAGCTTGTGTGAGGCTTTTTACCCTTTCCTTATTTATAAAGTTAGAAGAAAATAATAAACCAGGGAAGTTTTTCTTTCTTAATATACTAAGCTTCTTCTTTGATTCTAGTTTCATGATTGTTAGGACATTACAGAGTAGCTTCATAGTGCTTCGCTTGAAAGCTTTGCTGATGTGTCTAGTATGTTGTTATTTGCTGATTGCTTTCTTAAAGATTCATGCAGTTATGAACATTAACTGTTTAACTTCTATTCATTACATACAGGAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGC-GAAACTTTCTCCTC-GTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTG-AG--G-ATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCTATTTACATACATCTATTATTGTAGGTGTTCTCTATTTC</genome_strand>
        <mrna_strand>GGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAATTGATGGTGTAGAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTGTCTAACGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCGTGACCCTTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAGGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAGAGCGCATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACACGGAAACTTTCTCCTCTGTTGTTTTGCAACAGACTTAAGCATTAAGAATGATGTTTGTCGTCAATGCTATTCACTCTGCAGATAAAAGATCCCGAAGGGAAGATGTAGGTAGGCCTTGTAACTAGCTTATTTTTCCAACTTTGCCATTCTTCTATTGATCATTAAGTTATTCGGATGGTCATGTCAGTTGAAGTAGTGGTCATGGGGATTTCTATGGATGGTCTCCTCTTATAGACTTGTAATGTTGCCTTCAATTGTTA--TG-TGATGACGAAGTGTAAATCACACTGGCAGGTCTTTTCTTTCTCTATTTACATATAGTTATTATGATAGGTG-TCTCTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221568" ref_strand="+" ref_description="SGN-E221568 [cLEL-10-P12](-)">
      <seq>agcttattcaagggggagttcagataacatcacctgtgtggttgttcgatttgaaagcacatgaatggaccttttaaggtctgcctacctttcctttacttacaaacataaagaaaaaccaaaaagacgcgaaactttctcctcgttgttttgcaacagacttgagcattaaaaatgatgtttgtcgtcaatgctactcagtctgcagataaaagatcctgaagtgaggatgtaggccttgtaactagcttatttttccaactcttccattcttctgttgatcattaaattattcgggtggtcatgtcagttgaagtagtgatcatgaggatttctatggatactctccgcttatagacttgtaatgttgccttcaattgttatgtgatgatgatgaagtgtaaatcacactggcatagtttcttcttctctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="19173" stop="18141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18873" g_stop="18442" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="450"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E221568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18873" e_stop="18442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCT</genome_strand>
        <mrna_strand>AGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221986" ref_strand="+" ref_description="SGN-E221986 [cLEL-10-P12](-)">
      <seq>gttgttcgatttgaaagcacatgaatggaccttttaaggtctgcctacctattcctttacttacaaacataaagaaaaaccaaaaagacgcgaaactttctcctcgttgttttgcaacagacttgagcattaaaaatgatgtttgtcgtcaatgctactcagtctgcagataaaagatcctgaagtgaggatgtaggccttgtaactagcttatttttccaactcttccattcttctgttgatcattaaattattcgggtggtcatgtcagttgaagtagtgatcatgaggatttctatggatactctccgcttatagacttgtaatgttgccttcaattgttatgtgatgatgatgaagtgtaactcacactggcatagtttcttcttctctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="19133" stop="18141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18833" g_stop="18442" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="411"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E221986" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18833" e_stop="18442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCT-TTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCT</genome_strand>
        <mrna_strand>GTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTATTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAACTCACACTGGCATAGTTTCTTCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350901" ref_strand="+" ref_description="SGN-E350901 [cTOS-7-D19]">
      <seq>tcagctattcctttgtccattgatcacaagcctgacagatcagatgagcgtgaaaggatagaacaggccggtggtttcattatctgggcaggtacatggcgtgtaggtggggtccttgctgtttctcgtgcatttggagataaaatgctaaagccatatgttgtggcagacccagagattcaggaagaagaaattgatggtgtacaatttttgatagttgcgagtgatgggctttggaatgtcctctctaacgaggaggccgtgaccattgtgcaggacataaaagatgctgaggcagcttcacgtaagcttattgaagaagcttattcaagggggagttcagataacatcacctgtgtggttgttcgatttgaaagcacatgaatggaccttttaaggtctgcctacctttcctttacttacaaacataaagaaaaaccaaaaagacgcgaaactttctcctcgttgttttgcaacagacttgagcattaaaaatgatgtttgtcgtcaatgctactcagtctgcagataaaagatcctgaagtgangatgtaggccttgtaactagcttatttttccaactcttccattcttctgttgatcattaaattattcgggtggtcatgtcagttgaagtagtgatcatgaggatttctatggatactctccgcttatagacttgtaatgttgccttncaattgtatgtgatgatgatgaagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="28262" stop="18172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27963" g_stop="27873" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26585" g_stop="26494" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="183" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26493" i_stop="24236" i_length="2258">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24235" g_stop="24164" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="255" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24163" i_stop="18939" i_length="5225">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18938" g_stop="18472" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="722" r_length="467" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E350901" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27963" e_stop="27873"/>
          <exon e_start="26585" e_stop="26494"/>
          <exon e_start="24235" e_stop="24164"/>
          <exon e_start="18938" e_stop="18472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAGGTATAAGCCTGTTGCAATTTCTTTGTATGTATCAATTGCTGCTTGATTGGCCCAGTAAATGCTACCGGAGTCCCAAAGAATTGTATTTATTCTAGTGTTCTTGTATAAATTTAATAAAAAATTTATCTTAGTTTTCCTATCGGGTGCTATACATATTCATTTTGTGTATAATTTTCACTAGGCCCAAAATTTTTTTTAAAGAATTTTCCATAATCACATTAAAATAAGTATTTCAACCTTCATCGCATGTGAATATTATGAGACTTCACAAAAAATTGCTTTTCTGCCATTGTGAACATAACCTCAATCTAGGGCTAAAGGTTAGCGAGGTTACACTTAGGTATTTTTGATATGCTCTGATTGCAATTTGGTGGTTGAATAAAGTATCATTCTTGTCATGAAATTATTGTCTCCTCCAGTAAGATCACGCACAGATTGCATCTGAAGCTCACGAAGTGACAATAGGTTTTCCATGTTTCTTCATGAAGTATTGTTGAATTTTCAAGGTGTGATGTGATTTGATGTGTAAGATAACCTAGTCCTTTCAACACCCCATCTTCTGATCCATCCCTTCCTGGGCTACGAAAATTTGTAGTTAAATATAACACACACACCACCCTCCATTTTATATGATGTACTTTGACTTGGCACAGTTTAAGAAAGAAAGAAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAATTTGTGTGGCTGTGAATCATTTCTTTAAGGGTAAAATAGACATTTTATTGTTAAATTGTTACTTAATTAGAAATATGTCATTCTTTTTGGAACTGATTAAAAAGGAAAGCAAGTCACATAATTTGGAATAGAGGGAGTAGTTATTTATACTATTGTAGAATCATTTCGTTAAGTGGAAAAAGGGTACTAACTTGATTTATGTGTTAGTTTTAGATGTATTTTTCTATGTTGTGGAGCTAAAAAGCTTTTGGTGCTTTGTTTGGGATGTAGTTTTGTATGTGCTTATGTTGATTGGAGGTATAATGCTAATGCTTTGATCATGGAGCAAAGTGAGTTTTTCAGTGTATGGAATACAATTGATAAAGATGTTTATTGCAGTATGCTTCATGTGGTTTCTTTTCCTGTCAATTCCTTATATGAGCGCAATAAATACTACATATTCGTGCTTGCGTGCCTTTGGTGTTTCTTACTGAAAGTTATTATGGCTCAACATGACAAAAATATGCATGCACAATTTCTTAGTTCCTCTTTTTCCTTTTAGTTGAATTCAGTTCAATGTCCTGCTGCTCTATTCTTCAGGTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAGGTAACTCGGCTTTGTTTCTTGAAGCAATAGTTTGTCTTCATTTGCTGCTCTAATTGCCTGATCTGTCAAGGCACAAGAACATGGTGTTAATCTAGACGTACGGTTCTCCGCTGTCCCCTTGTGATATATTACTGGAAAAGGAAATTTTAAATTTTAAAGAAATCTATGGTGTCTTATTAGCTTCTTTAACACAACAACAACAACATGAAATTTCACAAGTGGTGGTCTGGGTAGTGTGTTGTGTATGCAATGTCACTCACCTTTTTAAGGTAGAAAGTCTATGTTTGGTAGACCCTTGACTCAAGTAAAACATATAAAAATAGGTAAGAGATAATACAGTAAAGAAGAAGCTGTGTTAAATAATGGGGAAAAGAACAGTAGTAATAACAACAGATAATGCAACAATCGAAGTAAAGGAAACAACAAGTAATAATAAATTGAAGAAACCCTTCGAGGTGACCCAGAGGTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAATGAAAGCAAGGGGTTTGCCTTCTGGGTCAAGCTCGTCGCACTACGGCTTGTCAAGTGCGGGTTACCTCTCTCGTGTGGTTTGCGAGCTATTGCATACGAGCAGGTGTTTTGCCCTGTGCACCCAAGGGGTAGCGACGGCGAGTTTCCCTTGTCATAAAAGTTAAATAATAAAATTGAAGATAAGAAAGTAGGAGGAAAATGCTGATAATACTTATAAGGGAACTAAACTACGCATGATTAATTACTAAACTTCTACCTTAATTTCGACCTTCATATCTTTCTATCTAGACTCATGCCCTCGGTAAGCTGAGGGTAGTGTTCAGCAAAGCAAGTGCTTCATTGCTTTAAGTGGTGAACCGAAACGAAGTGAAGCGAGGCATGTGAAAAGAAGCATCCGCTTTTGGGCTTGAAGCATGGTGCTACCAGAAGCGGCAACTCGAGAAAAACAGCGGTTTTATTTTTTTTGACTTAATTATTGACCGATTTTAAAGGATAAAAAGAGGCGTGACTGGCCTTGTCCTTAAGAAAGTAGAACAGTAAGGTATCAGTGTACTCTTTCCTTCCAGTACCTTTTCTCTTTTCTTTTTTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTGGTACAGTGGCATTGCTAGCCTAGGTTTTTTCTTCTCTCTGTTTTTCTTTTCCCTGTTTAGCTTTGATTATTTGAATTATATGTTGCTAATTTTTTCTTCACATTGATTAAATCATCTGTTGCTGAATTGTTTTGTTTCATAACAATGTCTAAAATGTTGTTGAATTGTTTCTTAATACTTAATAGTGATAAAAATATATTGTTGATTATATTCTTAAGTCTTATCTGCCGTTAGAAATGGCTGACCCAACATGAAAATATGGGAAAAGAAGTTAGTAAGACCAATAAGACAAATTGTATGTCAGTCTGTCTATTTGGTGACAAGACAACTAATGGGGAACCTTTTCCTAGTTTTTAATATGAATATTTGCTTATATATTTTGTCTTTATGTATTTTGGTCTTTTTTCTTTTAAATTGTGCTTCACTTCAATGAAGCGAGACCTTACCGCTTTTTACTGCTTCCGCTCCCCTACACACTAGCTGAGGGTGTATCATATCCCCCCGCCCCCTGAATCAGTTGTATGAAAATTGAATAGTGACAAGTACATTGCTCTGGGACTGTGATGAAGTTTAAAAGAGGGAAGAAACGAAGGAAGTTTAAAATAGAATACACAGCCTTAATCTTCCTTTTCCTCCTGTTCCACCACAGTTAATTAGATGATACTATAACCATTGCACAAAACGTGTTGCTATTTTGTCCCACGATTGTAGATGGAAGAATGATATGTTTGCATAGAGGTTTGACAGTTCCTATCCAAGGACTGACAGTAGACAAGTATCTCAATAAGAAAATGTTTGAGATGGTACATTGCACTTATACACATAAGCATACAAGGGGAAACTGGCATTCAGTTGTATCTTTTATGTCCATTTTTTTGCAGCTAAAGTATTTTAGGTCTCATATTCATGCTGTATTTTTCTTAGCACATCTTGTCCCTTTGATTTGGTTGTTTTATTATGATACCGTAACTCAGTAGTTTTATTGAACTGAAATATTTCTATGCACATCTCTTCCCTCTCCTCTCTCTCCCTCTCTCTTGTATAATTAGCTTCCATTGTTAATTGACTTGTATTGATGGTGAGTGCACTGCTGTTTGATCTCCTTTTCAGGAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAGGTCAGGTTTCTTTTAGTAAATTTGGTGAACCTTTCTTGTTTTTTCAACACTAACCAATTTTCCTCAACTTAAAAAGTCTTAGTAAGACGACAATGCTCATGGAGTTAGATGTCTTGATTGCATAATTTAGTTCGGCTTCTTACCTAGATGTTCTAGCTTTTATCTAATTTCTGACTTGCATTACTTATCGTAAGAAAAGTACAGAACAAGAAAAAGATAAGCTGCAGAATTGCCTTCCTTTAGTAAGGTACTTGCTACTCCTTACAAATAGGAGGAAGGCCAATGATGCAGGACTCGAGGGGCCAACAGTCGAGTATCTTTCATGCATTAATGTTCTTGCTACAATAATAAAAAATCAAGTATCCTTCATGCAGTAGTTTTCTTGCTACAGTAACTGTATCTCGTTCATCTAGATCTTGGGTTTTATTTATGTAATTTTTTCTTAAATTTTCTTACAGGACTTATTTGGTTATTTCTTTTCCTTATAGGAAAGACTGGGTGCACTAGATCCAATGTGATCCGGTCCTTACCTAGAGTCTAGAGTCTACGTATATTGGGAGCTTAGTCTCAAGCTTTCATTTCTTTCCACTTGGGAATTTCTTTGTTGACAAGAATTTGGAGTCGTAGTTGTTTAGAATTAGGGTTCTTGGATTTGTTTCCTCATAAATAAAAGTAGATACAATAATGTCAGCATTCAACTTTTTGTTTATAATAATGCTGGACTATTGACATGGTACCTGTGCTGGGAGGTAGGAGGTACCATGTGGAATTATTAGTTTAGATGCACTGATGCTGGCTAGGACACAACAATTAATAGAAAAACGGATAAGGGTAAAAAATGTCCTTAAACTATGCTAAATTGAACAAAAATGCCCTGTGTTAATAGTTTGATCCTAAATTCCCCTATTGTTACTTTTGGGTAAAAACTGTCATTTTCCTGATAAATAGGATGTTTCTTTTCTTTGTAAACACATTGCTTACCTAATAAAATATTATTTTTAAAGGACCTTTTTCTTTTCTTTTGTCCTTTAAAAATTCAACTAATATAAAAGTAGAAACTAATTTTTTCCTTCTTAATCTCCTTTTTTAAATAAAAAAGAGAATTACCCTACATGTGATTTTCCTCTAAGGCATGTATTTATCAAGCATTGCCTCAGACCATCCAGGATGATGCAAATAGACGTAGAGGATAAGTGGTCATAGAAGAAAAATTAGCAATGGAATATATAGATTTGCAAGTACTGTACCTTTGCAAAGATATGATGACAAAGGAACTGGCATACGACATGTTTCATTGGTCTCTCTCATCCTCGAGTAAACTTGAACAGTTGGCGGTCTTGCTAGCACAAATGAGCAAGCGCAATAGTCGATTGGTGTTCAGTAAAAGAACAAGTAGACGAAGGAGCATCATCTAATTGTTCTGTTAAAGCATAGGTAAATTGATTGACTACCCACTCATTTTCCTCCTCCTAACTAGTAGAAATGGGGAGGTGCATCTCTGAAAATACCATTTCGGTTGACACCAAATATTTGCTGAGTTTGGTATAATGACGCCGATACCCGTTCTGAAGTTGAGAATAGCCAAGGAGAACACATTTCAATGCCATGGAAACCAAATTGGTAATAGCTTGTCGAGCATCTTGGAAATATCATGTACTTCCAAATACCTTAGGTTCCACTGGAAATAGGGACTTGTTGGGGAGTCGAACACTTAAGGCATGTTATCAACAAGTGCACTAGGTGGGATGCAATTAATTAAAAAGTTAAGTTGTAGAGACTGCATCTGTCCAAATTGTTTAGAAACCTTCATTTGGATTAGAAGTACCTTAGTTGTCTCAAGTAAATTCCTATTTTTCCTCTTAGCAACTCTATTTGAGATGGTGTATAATACATGAAGACTGATGGTGAATTCCGTGTTGTCTCATGAATGATAGAAACAATTATGGCATGTATTCTCTGGCATTATCACTCCTTAGAATAAGCAGTGAAGCATTGATTTGAGTTTTGATTTCAGCATGGGAGGCACAAAAGTGAGTAAACACTTCGAAACGACTCTTCATAAAATAAATCCAAGACATTTGAGAGAAATCGTTCACAAAGTAACAAATATATATGCCCTGTTTTGGAAACAATAGGACAGTCCCCAAACATCAAAATGAACTAATTCAAAAGCTGACTCAACTAGCTTATTAATCTTGGACCTACTGAGGTGCAACAGTGTTTTACAAATTCACATGACTTATTGTCTAAGAAGAAACATTCTGAAACTTGGGACGACTTTAATGTAGGCAAAGAAGGATCGCTTCGCCGATGATATGCTTCAAATGGAAACACACCATAGGAGTAGGCACCAAACCGAGGCTCCCACTTATTAAAAATATGAAGATCATCAGATGTATGTCCCTTACCAATTACTTGATTTGTCGTAAGATGATGAGACAAACAATGATCGGGAAAGAATGAGATATAGCAATTGAGTTCTCTTAATGATGGTTAATTTTATGTTGGGGATAGAGACCTAGTCGTTTGAGGTTATAAGTGTTGAAGAAGACAATGTTGTTAATTCTGAAAAAAGAAGACAGTGTTGTTGTTGGAATAGTAACCCTGTCCTTATATAAGCACAAGGCAAATATGGGTCATTTCACATAATTCAAGGGCTTATTGAACTCTTTTCTTTTTGTCAAAAATGTCCACGTGCTGGTAAGCATTATTTGTTGGTTAAAAAGGGCAAATCTAACCCCTTTTTACAATGATAGGGGTATATCTAACACCCCTACCACTAATGATGTTCAAATTTAGACCATTTTGCCAAGTTTAGGGGCAAATTTGGATCTTTTCACTTTTATTATTGAGTTCTAGAATATATTCAACTTGTTTGAATCTTAAAGAATTATGATTACTGTGAGGAGACACAACCCCAATTTTCAATCAACATATGCTAGTAAATCATGTCTTTTAAAAGATAATATTGCACTACTTTTCTACCCTTTTGCGTCACACTTTTATTTTTAGGATGTTCAAAAGAACAAAACCATTAAATATTTGGAAACTATTAAACATTAGTATTTTAAGCGTTAATTGCACTAAATACCCCTGTTAATGTGATTTCCTCTTGGATGCACCTCTGTATTTTAAAATTGAACACTTACAACCGTCTTAGGAGGTATATCCTTAACTATACTTGCACGTCTTAGGAGGTATATTTGTAACTAAGTATATTAAAATAGACAAACTGAAATTATAAATAAAAAGTTTTTATGTATTTATGAAATTTGAAAAGTGGATAATTCTTTTTATTGAAAATATTTATTCATGCCTTAAATTAAAAGAGAATTTTTATTTTCTTTAAATATGCATCTTTTTAAACTCTTAGATAAGAAATGACCACAAATTACTTAATAGGATGAATAAATTTTGACATAATTATTTTCTCTTTTTTTAAAAAAAGAACTATGGCAAAAAAGTTTTCATCTTTCAAGCAATTAAAATATAATGATGATATCTCAATTTCTTTTTTTGACATTTAAACCTACTATATATAATAGTAAGGGAAAAAGGTCGGAAATATATCTGAACTTTGACCGAAATTGTTGTAATGATACTAGACATTGGAAAGTACCTTTTAGCCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATTTGTCCACGTGGACATAAAAAATATTGCATAATTGTAAATAGTAATTTGTCCACGTGAGCACATATATACTTTTAAAATACACTATTAAATAGTGCAGGGGTAAAAGGTCTCTATAAAGTTCGGTATCGCAACAACAATTTGAGCCAAAGTTGAAGTATTTTTCAGACTCTTTTCCCTAATAGAAATCCTACACAAACGATACTTTATCTAAGTAAATTAACATAAGAATTTTGAAGCAGAGAATAAACAAAACAAAAATAAAAAGAAGAAATTTGTATATAATATAATAAAAATATTAAAATTAAATAAACATACAAATAAGTTACATGTTTAAAGTGCAAGAAGATTGTAGTAATAAGTGATATTTCTTATTAGGTAATTTGTGGTATTTATAATTTTAAGTTACCTTTTAATAATTATATTTTAATATACTTAGTTAATAATATACCTCGTATGAGATTTAAGTGTATGATTTTCATAGTACAAGGGGTGTACAACAACAAAACATACCCTGTGTAATTCAACGGGTGGGGTTTAGGGAGGATGGTGTATATGCAGACCTTGTCTTACCTTGTGAAGGTAAAAAGGTTGTATCCTAAACTGAATATTATGGGGGTACTTAGTGTAACTAACCTTATTTTTTGCTTTTCTTCCTGATGTTACTTGGTTGGAACCAACTTGATACAAAAACTGATCTTTTATTAAAGAGAAATAAGAAGTGACACGTGGAACTCTTACCGCATTCAATTTAAATAAGGGGCTTTTGGGACCTTGTACATAGATTTAGTGTAATTTTTTTAAATTTCAAATTCCTTGCATTGTCAAACAATGTCACATTAAAAAGGAGGGACAGAGTATAAATTTGATGGGTGGAAGGAGGTGACCGAGGATGCTCTGAGGTGGATGATTAATCCAGACATCTCCATTTGAAACCTCAGAACCTGGACTGAATTTGAATGGCTCATACATGGGTTTCTTTTATTTCTTCGGTCTTTGTTTCAACCTGGAGCTTGTCATTAAAAGGTAGGAACATCAAAAAAGAGATGAAAATCTTCTCTAAGTTCATTAGTGATCAGGAACTCAGTTTTGTAATTCCAAGTTGAGCTTTAAATTTTCGTAGGTTTGAGGTTGAAATTGAGGGGAAAAGACTTGCTAATGTATTCACTATTTTGGGAGTTTGATGAAAGTGGGAACTATTATGCTCAGAAGAATTGGCCAGAATTGGTTCATAGGCTTAGAGCTTGATGTAATGCTTCTTTGCTTAGGCAAGCTCAAGTTTGATTAGTGTTGATTTCTAGAGCTTGTGTGAGGCTTTTTACCCTTTCCTTATTTATAAAGTTAGAAGAAAATAATAAACCAGGGAAGTTTTTCTTTCTTAATATACTAAGCTTCTTCTTTGATTCTAGTTTCATGATTGTTAGGACATTACAGAGTAGCTTCATAGTGCTTCGCTTGAAAGCTTTGCTGATGTGTCTAGTATGTTGTTATTTGCTGATTGCTTTCTTAAAGATTCATGCAGTTATGAACATTAACTGTTTAACTTCTATTCATTACATACAGGAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTT-CAATTGTTATGTGATGATGATGAAGTGT</genome_strand>
        <mrna_strand>TCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGTGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGANGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTNCAATTG-TATGTGATGATGATGAAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354351" ref_strand="+" ref_description="SGN-E354351 [cTOS-17-G7]">
      <seq>gcagacccagagattcaggaagaagaaattgatggtgtacaatttttgatagttgcgagtgatgggctttggaatgtcctctctaacgaggaggccgtgaccattgtgcaggacataaaagatgctgaggcagcttcacgtaagcttattgaagaagcttattcaagggggagttcagataacatcacctgtgtggttgttcgatttgaaagcacatgaatggaccttttaaggtctgcctacctttcctttacttacaaacataaagaaaaaccaaaaagacgcgaaactttctcctcgttgttttgcaacagacttgagcattaaaaatgatgtttgtcgtcaatgctactcagtctgcagataaaagatcctgaagtgaggatgtaagccttgtaactagcttatttttccaactcttccattcttctgttgatcattaaattattcgggtggtcatgtcagttgaagtagtgatcatgaggatttctatggatactctccgcttatagacttgtaatggtgccttcaattgttatgtgatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="26811" stop="18177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26511" g_stop="26494" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26493" i_stop="24236" i_length="2258">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24235" g_stop="24164" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="90" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24163" i_stop="18939" i_length="5225">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18938" g_stop="18477" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="552" r_length="462" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E354351" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26511" e_stop="26494"/>
          <exon e_start="24235" e_stop="24164"/>
          <exon e_start="18938" e_stop="18477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACCCAGAGATTCAGGTAACTCGGCTTTGTTTCTTGAAGCAATAGTTTGTCTTCATTTGCTGCTCTAATTGCCTGATCTGTCAAGGCACAAGAACATGGTGTTAATCTAGACGTACGGTTCTCCGCTGTCCCCTTGTGATATATTACTGGAAAAGGAAATTTTAAATTTTAAAGAAATCTATGGTGTCTTATTAGCTTCTTTAACACAACAACAACAACATGAAATTTCACAAGTGGTGGTCTGGGTAGTGTGTTGTGTATGCAATGTCACTCACCTTTTTAAGGTAGAAAGTCTATGTTTGGTAGACCCTTGACTCAAGTAAAACATATAAAAATAGGTAAGAGATAATACAGTAAAGAAGAAGCTGTGTTAAATAATGGGGAAAAGAACAGTAGTAATAACAACAGATAATGCAACAATCGAAGTAAAGGAAACAACAAGTAATAATAAATTGAAGAAACCCTTCGAGGTGACCCAGAGGTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAATGAAAGCAAGGGGTTTGCCTTCTGGGTCAAGCTCGTCGCACTACGGCTTGTCAAGTGCGGGTTACCTCTCTCGTGTGGTTTGCGAGCTATTGCATACGAGCAGGTGTTTTGCCCTGTGCACCCAAGGGGTAGCGACGGCGAGTTTCCCTTGTCATAAAAGTTAAATAATAAAATTGAAGATAAGAAAGTAGGAGGAAAATGCTGATAATACTTATAAGGGAACTAAACTACGCATGATTAATTACTAAACTTCTACCTTAATTTCGACCTTCATATCTTTCTATCTAGACTCATGCCCTCGGTAAGCTGAGGGTAGTGTTCAGCAAAGCAAGTGCTTCATTGCTTTAAGTGGTGAACCGAAACGAAGTGAAGCGAGGCATGTGAAAAGAAGCATCCGCTTTTGGGCTTGAAGCATGGTGCTACCAGAAGCGGCAACTCGAGAAAAACAGCGGTTTTATTTTTTTTGACTTAATTATTGACCGATTTTAAAGGATAAAAAGAGGCGTGACTGGCCTTGTCCTTAAGAAAGTAGAACAGTAAGGTATCAGTGTACTCTTTCCTTCCAGTACCTTTTCTCTTTTCTTTTTTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTGGTACAGTGGCATTGCTAGCCTAGGTTTTTTCTTCTCTCTGTTTTTCTTTTCCCTGTTTAGCTTTGATTATTTGAATTATATGTTGCTAATTTTTTCTTCACATTGATTAAATCATCTGTTGCTGAATTGTTTTGTTTCATAACAATGTCTAAAATGTTGTTGAATTGTTTCTTAATACTTAATAGTGATAAAAATATATTGTTGATTATATTCTTAAGTCTTATCTGCCGTTAGAAATGGCTGACCCAACATGAAAATATGGGAAAAGAAGTTAGTAAGACCAATAAGACAAATTGTATGTCAGTCTGTCTATTTGGTGACAAGACAACTAATGGGGAACCTTTTCCTAGTTTTTAATATGAATATTTGCTTATATATTTTGTCTTTATGTATTTTGGTCTTTTTTCTTTTAAATTGTGCTTCACTTCAATGAAGCGAGACCTTACCGCTTTTTACTGCTTCCGCTCCCCTACACACTAGCTGAGGGTGTATCATATCCCCCCGCCCCCTGAATCAGTTGTATGAAAATTGAATAGTGACAAGTACATTGCTCTGGGACTGTGATGAAGTTTAAAAGAGGGAAGAAACGAAGGAAGTTTAAAATAGAATACACAGCCTTAATCTTCCTTTTCCTCCTGTTCCACCACAGTTAATTAGATGATACTATAACCATTGCACAAAACGTGTTGCTATTTTGTCCCACGATTGTAGATGGAAGAATGATATGTTTGCATAGAGGTTTGACAGTTCCTATCCAAGGACTGACAGTAGACAAGTATCTCAATAAGAAAATGTTTGAGATGGTACATTGCACTTATACACATAAGCATACAAGGGGAAACTGGCATTCAGTTGTATCTTTTATGTCCATTTTTTTGCAGCTAAAGTATTTTAGGTCTCATATTCATGCTGTATTTTTCTTAGCACATCTTGTCCCTTTGATTTGGTTGTTTTATTATGATACCGTAACTCAGTAGTTTTATTGAACTGAAATATTTCTATGCACATCTCTTCCCTCTCCTCTCTCTCCCTCTCTCTTGTATAATTAGCTTCCATTGTTAATTGACTTGTATTGATGGTGAGTGCACTGCTGTTTGATCTCCTTTTCAGGAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAGGTCAGGTTTCTTTTAGTAAATTTGGTGAACCTTTCTTGTTTTTTCAACACTAACCAATTTTCCTCAACTTAAAAAGTCTTAGTAAGACGACAATGCTCATGGAGTTAGATGTCTTGATTGCATAATTTAGTTCGGCTTCTTACCTAGATGTTCTAGCTTTTATCTAATTTCTGACTTGCATTACTTATCGTAAGAAAAGTACAGAACAAGAAAAAGATAAGCTGCAGAATTGCCTTCCTTTAGTAAGGTACTTGCTACTCCTTACAAATAGGAGGAAGGCCAATGATGCAGGACTCGAGGGGCCAACAGTCGAGTATCTTTCATGCATTAATGTTCTTGCTACAATAATAAAAAATCAAGTATCCTTCATGCAGTAGTTTTCTTGCTACAGTAACTGTATCTCGTTCATCTAGATCTTGGGTTTTATTTATGTAATTTTTTCTTAAATTTTCTTACAGGACTTATTTGGTTATTTCTTTTCCTTATAGGAAAGACTGGGTGCACTAGATCCAATGTGATCCGGTCCTTACCTAGAGTCTAGAGTCTACGTATATTGGGAGCTTAGTCTCAAGCTTTCATTTCTTTCCACTTGGGAATTTCTTTGTTGACAAGAATTTGGAGTCGTAGTTGTTTAGAATTAGGGTTCTTGGATTTGTTTCCTCATAAATAAAAGTAGATACAATAATGTCAGCATTCAACTTTTTGTTTATAATAATGCTGGACTATTGACATGGTACCTGTGCTGGGAGGTAGGAGGTACCATGTGGAATTATTAGTTTAGATGCACTGATGCTGGCTAGGACACAACAATTAATAGAAAAACGGATAAGGGTAAAAAATGTCCTTAAACTATGCTAAATTGAACAAAAATGCCCTGTGTTAATAGTTTGATCCTAAATTCCCCTATTGTTACTTTTGGGTAAAAACTGTCATTTTCCTGATAAATAGGATGTTTCTTTTCTTTGTAAACACATTGCTTACCTAATAAAATATTATTTTTAAAGGACCTTTTTCTTTTCTTTTGTCCTTTAAAAATTCAACTAATATAAAAGTAGAAACTAATTTTTTCCTTCTTAATCTCCTTTTTTAAATAAAAAAGAGAATTACCCTACATGTGATTTTCCTCTAAGGCATGTATTTATCAAGCATTGCCTCAGACCATCCAGGATGATGCAAATAGACGTAGAGGATAAGTGGTCATAGAAGAAAAATTAGCAATGGAATATATAGATTTGCAAGTACTGTACCTTTGCAAAGATATGATGACAAAGGAACTGGCATACGACATGTTTCATTGGTCTCTCTCATCCTCGAGTAAACTTGAACAGTTGGCGGTCTTGCTAGCACAAATGAGCAAGCGCAATAGTCGATTGGTGTTCAGTAAAAGAACAAGTAGACGAAGGAGCATCATCTAATTGTTCTGTTAAAGCATAGGTAAATTGATTGACTACCCACTCATTTTCCTCCTCCTAACTAGTAGAAATGGGGAGGTGCATCTCTGAAAATACCATTTCGGTTGACACCAAATATTTGCTGAGTTTGGTATAATGACGCCGATACCCGTTCTGAAGTTGAGAATAGCCAAGGAGAACACATTTCAATGCCATGGAAACCAAATTGGTAATAGCTTGTCGAGCATCTTGGAAATATCATGTACTTCCAAATACCTTAGGTTCCACTGGAAATAGGGACTTGTTGGGGAGTCGAACACTTAAGGCATGTTATCAACAAGTGCACTAGGTGGGATGCAATTAATTAAAAAGTTAAGTTGTAGAGACTGCATCTGTCCAAATTGTTTAGAAACCTTCATTTGGATTAGAAGTACCTTAGTTGTCTCAAGTAAATTCCTATTTTTCCTCTTAGCAACTCTATTTGAGATGGTGTATAATACATGAAGACTGATGGTGAATTCCGTGTTGTCTCATGAATGATAGAAACAATTATGGCATGTATTCTCTGGCATTATCACTCCTTAGAATAAGCAGTGAAGCATTGATTTGAGTTTTGATTTCAGCATGGGAGGCACAAAAGTGAGTAAACACTTCGAAACGACTCTTCATAAAATAAATCCAAGACATTTGAGAGAAATCGTTCACAAAGTAACAAATATATATGCCCTGTTTTGGAAACAATAGGACAGTCCCCAAACATCAAAATGAACTAATTCAAAAGCTGACTCAACTAGCTTATTAATCTTGGACCTACTGAGGTGCAACAGTGTTTTACAAATTCACATGACTTATTGTCTAAGAAGAAACATTCTGAAACTTGGGACGACTTTAATGTAGGCAAAGAAGGATCGCTTCGCCGATGATATGCTTCAAATGGAAACACACCATAGGAGTAGGCACCAAACCGAGGCTCCCACTTATTAAAAATATGAAGATCATCAGATGTATGTCCCTTACCAATTACTTGATTTGTCGTAAGATGATGAGACAAACAATGATCGGGAAAGAATGAGATATAGCAATTGAGTTCTCTTAATGATGGTTAATTTTATGTTGGGGATAGAGACCTAGTCGTTTGAGGTTATAAGTGTTGAAGAAGACAATGTTGTTAATTCTGAAAAAAGAAGACAGTGTTGTTGTTGGAATAGTAACCCTGTCCTTATATAAGCACAAGGCAAATATGGGTCATTTCACATAATTCAAGGGCTTATTGAACTCTTTTCTTTTTGTCAAAAATGTCCACGTGCTGGTAAGCATTATTTGTTGGTTAAAAAGGGCAAATCTAACCCCTTTTTACAATGATAGGGGTATATCTAACACCCCTACCACTAATGATGTTCAAATTTAGACCATTTTGCCAAGTTTAGGGGCAAATTTGGATCTTTTCACTTTTATTATTGAGTTCTAGAATATATTCAACTTGTTTGAATCTTAAAGAATTATGATTACTGTGAGGAGACACAACCCCAATTTTCAATCAACATATGCTAGTAAATCATGTCTTTTAAAAGATAATATTGCACTACTTTTCTACCCTTTTGCGTCACACTTTTATTTTTAGGATGTTCAAAAGAACAAAACCATTAAATATTTGGAAACTATTAAACATTAGTATTTTAAGCGTTAATTGCACTAAATACCCCTGTTAATGTGATTTCCTCTTGGATGCACCTCTGTATTTTAAAATTGAACACTTACAACCGTCTTAGGAGGTATATCCTTAACTATACTTGCACGTCTTAGGAGGTATATTTGTAACTAAGTATATTAAAATAGACAAACTGAAATTATAAATAAAAAGTTTTTATGTATTTATGAAATTTGAAAAGTGGATAATTCTTTTTATTGAAAATATTTATTCATGCCTTAAATTAAAAGAGAATTTTTATTTTCTTTAAATATGCATCTTTTTAAACTCTTAGATAAGAAATGACCACAAATTACTTAATAGGATGAATAAATTTTGACATAATTATTTTCTCTTTTTTTAAAAAAAGAACTATGGCAAAAAAGTTTTCATCTTTCAAGCAATTAAAATATAATGATGATATCTCAATTTCTTTTTTTGACATTTAAACCTACTATATATAATAGTAAGGGAAAAAGGTCGGAAATATATCTGAACTTTGACCGAAATTGTTGTAATGATACTAGACATTGGAAAGTACCTTTTAGCCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATTTGTCCACGTGGACATAAAAAATATTGCATAATTGTAAATAGTAATTTGTCCACGTGAGCACATATATACTTTTAAAATACACTATTAAATAGTGCAGGGGTAAAAGGTCTCTATAAAGTTCGGTATCGCAACAACAATTTGAGCCAAAGTTGAAGTATTTTTCAGACTCTTTTCCCTAATAGAAATCCTACACAAACGATACTTTATCTAAGTAAATTAACATAAGAATTTTGAAGCAGAGAATAAACAAAACAAAAATAAAAAGAAGAAATTTGTATATAATATAATAAAAATATTAAAATTAAATAAACATACAAATAAGTTACATGTTTAAAGTGCAAGAAGATTGTAGTAATAAGTGATATTTCTTATTAGGTAATTTGTGGTATTTATAATTTTAAGTTACCTTTTAATAATTATATTTTAATATACTTAGTTAATAATATACCTCGTATGAGATTTAAGTGTATGATTTTCATAGTACAAGGGGTGTACAACAACAAAACATACCCTGTGTAATTCAACGGGTGGGGTTTAGGGAGGATGGTGTATATGCAGACCTTGTCTTACCTTGTGAAGGTAAAAAGGTTGTATCCTAAACTGAATATTATGGGGGTACTTAGTGTAACTAACCTTATTTTTTGCTTTTCTTCCTGATGTTACTTGGTTGGAACCAACTTGATACAAAAACTGATCTTTTATTAAAGAGAAATAAGAAGTGACACGTGGAACTCTTACCGCATTCAATTTAAATAAGGGGCTTTTGGGACCTTGTACATAGATTTAGTGTAATTTTTTTAAATTTCAAATTCCTTGCATTGTCAAACAATGTCACATTAAAAAGGAGGGACAGAGTATAAATTTGATGGGTGGAAGGAGGTGACCGAGGATGCTCTGAGGTGGATGATTAATCCAGACATCTCCATTTGAAACCTCAGAACCTGGACTGAATTTGAATGGCTCATACATGGGTTTCTTTTATTTCTTCGGTCTTTGTTTCAACCTGGAGCTTGTCATTAAAAGGTAGGAACATCAAAAAAGAGATGAAAATCTTCTCTAAGTTCATTAGTGATCAGGAACTCAGTTTTGTAATTCCAAGTTGAGCTTTAAATTTTCGTAGGTTTGAGGTTGAAATTGAGGGGAAAAGACTTGCTAATGTATTCACTATTTTGGGAGTTTGATGAAAGTGGGAACTATTATGCTCAGAAGAATTGGCCAGAATTGGTTCATAGGCTTAGAGCTTGATGTAATGCTTCTTTGCTTAGGCAAGCTCAAGTTTGATTAGTGTTGATTTCTAGAGCTTGTGTGAGGCTTTTTACCCTTTCCTTATTTATAAAGTTAGAAGAAAATAATAAACCAGGGAAGTTTTTCTTTCTTAATATACTAAGCTTCTTCTTTGATTCTAGTTTCATGATTGTTAGGACATTACAGAGTAGCTTCATAGTGCTTCGCTTGAAAGCTTTGCTGATGTGTCTAGTATGTTGTTATTTGCTGATTGCTTTCTTAAAGATTCATGCAGTTATGAACATTAACTGTTTAACTTCTATTCATTACATACAGGAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGA</genome_strand>
        <mrna_strand>GCAGACCCAGAGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAAGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGGTGCCTTCAATTGTTATGTGATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302182" ref_strand="+" ref_description="SGN-E302182 [cLEW-19-A11]">
      <seq>tcatcatcacataacaattgaaggcaacattacaagtctataagcggagagtatccatagaaatcctcatgatcactacttcaactgacatgaccacccgaataatttaatgatcaacagaagaatggaagagttggaaaaataagctagttacaaggcctacatcctcacttcaagatcttttatctgcagactgagtagcattgacgacaaacatcatttttaatgctcaagtctgttgcaaaacaacgaggagaaagtttcgcgtctttttggtttttctttatgtttgtaagtaaaggaaaggtaggcagaccttaaaaggtccattcatgtgctttcaaatcgaacaaccacacaggtgatgttatctgaactcccccttgaataagcttcttcaataagcttacgtgaagctgcctcagcatcttttatgtcctgcacaatggtcacggcctcctgtatgtaatgaatagaagttaaacagttaatgttcataactgcatgaatctttaagaaagcaatcagcaaataacaacatactagacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="18180" stop="19330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18480" g_stop="19030" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E302182" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18480" e_stop="19030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCATCACATAACAATTGAAGGCAACATTACAAGTCTATAAGCGGAGAGTATCCATAGAAATCCTCATGATCACTACTTCAACTGACATGACCACCCGAATAATTTAATGATCAACAGAAGAATGGAAGAGTTGGAAAAATAAGCTAGTTACAAGGCCTACATCCTCACTTCAGGATCTTTTATCTGCAGACTGAGTAGCATTGACGACAAACATCATTTTTAATGCTCAAGTCTGTTGCAAAACAACGAGGAGAAAGTTTCGCGTCTTTTTGGTTTTTCTTTATGTTTGTAAGTAAAGGAAAGGTAGGCAGACCTTAAAAGGTCCATTCATGTGCTTTCAAATCGAACAACCACACAGGTGATGTTATCTGAACTCCCCCTTGAATAAGCTTCTTCAATAAGCTTACGTGAAGCTGCCTCAGCATCTTTTATGTCCTGCACAATGGTCACGGCCTCCTGTATGTAATGAATAGAAGTTAAACAGTTAATGTTCATAACTGCATGAATCTTTAAGAAAGCAATCAGCAAATAACAACATACTAGACACA</genome_strand>
        <mrna_strand>TCATCATCACATAACAATTGAAGGCAACATTACAAGTCTATAAGCGGAGAGTATCCATAGAAATCCTCATGATCACTACTTCAACTGACATGACCACCCGAATAATTTAATGATCAACAGAAGAATGGAAGAGTTGGAAAAATAAGCTAGTTACAAGGCCTACATCCTCACTTCAAGATCTTTTATCTGCAGACTGAGTAGCATTGACGACAAACATCATTTTTAATGCTCAAGTCTGTTGCAAAACAACGAGGAGAAAGTTTCGCGTCTTTTTGGTTTTTCTTTATGTTTGTAAGTAAAGGAAAGGTAGGCAGACCTTAAAAGGTCCATTCATGTGCTTTCAAATCGAACAACCACACAGGTGATGTTATCTGAACTCCCCCTTGAATAAGCTTCTTCAATAAGCTTACGTGAAGCTGCCTCAGCATCTTTTATGTCCTGCACAATGGTCACGGCCTCCTGTATGTAATGAATAGAAGTTAAACAGTTAATGTTCATAACTGCATGAATCTTTAAGAAAGCAATCAGCAAATAACAACATACTAGACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378512" ref_strand="+" ref_description="SGN-E378512 [TUS-20-O15]">
      <seq>tggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgatagattgcttgtcgcaaatgtgggggactctagagtcgtggcttgcagagatggttcagctattcctttgtccattgatcacaagcctgacagatcagatgagcgtgaaaggatagaacaggccggtggtttcattatctgggcaggtacatggcgtgtaggtggggtccttgctgtttctcgtgcatttggagataaaatgctaaagccatatgttgtggcagacccagagattcaggaagaagaaattgatggtgtacaatttttgatagttgcgagtgatgggctttggaatgtcctctctaacgaggaggccgtgaccattgtgcaggacataaaagatgctgaggcagcttcacgtaagcttattgaagaagcttattncagggggagttcagataacatcacctgtgtggttgttcgatttgaaagcacatgaatggaccttttaaggtctgcctacctttcctttacttacaaacataaagaaaaaccaaaagacgcgaaactttctcctcgttgttttgcacagacttgagcattaaaatgatngttgtcgtcatgctactcagtctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="34954" stop="18368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34654" g_stop="34521" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="233" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32976" g_stop="32818" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="391" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27959" g_stop="27873" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="478" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26585" g_stop="26494" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="570" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26493" i_stop="24236" i_length="2258">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24235" g_stop="24164" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="642" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24163" i_stop="18939" i_length="5225">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18938" g_stop="18668" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="909" r_length="267" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E378512" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34654" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32818"/>
          <exon e_start="27959" e_stop="27873"/>
          <exon e_start="26585" e_stop="26494"/>
          <exon e_start="24235" e_stop="24164"/>
          <exon e_start="18938" e_stop="18668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAGGTTTGTTGCTTGTTGACTATTTACTATATCCAAAGTTTTCACAAACATGACTTTGGCTATCTCAAGGTCCATTAGTTCTTTTGTGGATTATCTTTGTTATAGGTAAACAAACTTTTTATAAGGGAAGTACATCAGAAAAAATGGGTAAAGGCGTAAAGCTCACAGGGACAGAGGGAGTTTTTCATTAGGTTTAGTCTGAATAGTTTGCATAGGATAACATATTCTTTGGTCTGTACAAAACTGTGATTCTGGAACTACTTTTTGTAATTTCTAGAACTTTCCACATTTTCATATCAATGGAAGTTCATTAATATATCAAAAACGTGTAAAAAAGTACATATACCTGAACAAACAAATTAAAAATAACAAAGCACATTTCAAACCTTCAAGCAATTAAGAACCTCAAACAAATTCAGACACTTGAAACAACTTTGTTACTCGATGCTAGCTTATCACAATTTATGTTAAGCATTCTTACAATCATAGTAACCACTACACTTAATTTGTCTGGCTAGTTGCTTCCGCTATGCGTTATAAATGAACTGATCATTAGGATCACATATATCAGCTTTCTATATCCTCTATTGTTTATACCCTTTGGTCTGATTGTTTGTATAATGATTTATTCAATAATTTAGAAAGCTTGTTATGTTGTCTTTTGTTTTGATTTGGCCATAGCCAGGCAGAACATATTTCTGCTTGGAAGATGTTAACTATGAGACTTTTGCAACAAAGGAATATGACTTGTATAATTTAAAAAATTAACCGATGAAGCATGTTTTGTATTGACTGACCTTAATCATATTTGTCTCCAAGGTCATTTGTCGGTGTAAAATTTTGTTATAGTCTTTTATCTGTAGGTTCTCACAAGAGTTATTAATCTGTGAAAACTGAAAAGCTTGCCCTGTTTTTCATTCAGAATAAGATATGAAGGAATCTGTGGGGTGTTTTATAATTTTTGTATATGGGTTTATCTTATGAATATAGGTTCATTATTACTCATTTAAAAAGAAAAAGAAGACTAGAAAGATAGGATGTTTCTTATGTATACTATCTAGTAAAGTCTCAATGATTTACCGTTTGCAGCCTTTACCATTTAACATTTGGGCTTTCCATCCCCCTATTATCCTTTTAACAACAACAACATCCCCTGTGAAATCTCACAAGTGAGGTCTTAGGAGGGTAAAATGTATGCATACCTTACAACTACCTCGTGGAGGTAGAGAGTCTGTTCCCGACATATTTTTATTAAGACTTTCCATATTTATGGAGTGGAACAATGACAAATCATATGGTTTGATGTAAACACATGGTGAGGTTATGCTTTTTTTGATGAAGTCACAACGGGTTTGGGTAAGTTATCGGTATGATATTCCGTAAGAAGAGAGAACTTCTTAGAAAGCACCATTAAGAATATAGATTGGAAAAAGTCCAAATATACCCATGAATTATACTATTTGGAGCAAATTTATCCTCCCATAAAAATGGCCTATATCTACCCCTATCGTTACACAAATGACTCATATATATCCTGTTCGATAGATGGAGCTCAAATACCCGTCATTGAAATATTTTTCCTAGTGTATTCATTATAAGTAAAGCCATGTGTAAAAAATTAAATCTTGATCAGATAGTAGCTGTTAAATTAAAGAATAGAAGTCCATTAATCCTAGTTTGTTTTGGCCTATTTTGCTTATTGAGGATTAATTTGATCAATTTTGGTGTTAAGATTAAAACAAATTCATTCTTTTTAAGATATTAAGCACTTACATTAAAAGTAAAGAACTACAAGTTGCAACACCGCAATTCAGAAGAACACATTTTACATATTAGTCAAAGCTCACCTAAATTTCATCCTTGGAAAGTTAATAGGGAAATAATTTGGGACATTTAAGGGAAGTTCCGATCTTTCACCTCATGAATTGATAAGGAAATGTACTTTATAATTCATTTTTGTACCGACCAAAAAGGAAATGGGTTATTCCATTTGAAATGGAGGAGGTACTTGTGGTTGAATTAGATTTGCAAGTTAAGAAAAAATCATTATGCAATTTAGGAGTTTTTTTAAAGATGAAGTAGGAATATTATTAACAAAAGAGCATTAACTAGCCCGTATACAAAAAGTAGAAAATCTTTAAAGAAAATATAATTTTTTATGAATGACACCAAATCATCTAAACAAAAAGTAACCTCACGGGTGCACCAAAGATAGCTAAGGGAAACAAGGTAGTTCTCAAGGGTAGAATTTTTCTCTATTCCATCAAAAGCTCTGCTATTCCCCTCTCTCCGTATGGTTCACATCTGTGCTATAGGGGTAATTTCATATGCCTTGCGTCTAGGGGTGTGCATCAGTCAGCTTAGTTCGGTTTTACATATTATTGATTCGATTTACAGTTTTTAATATGCTAAACCCATAAGATATTTTTATCGATTTTGGTCCTTAACGGTTTGGTTCTCGGTTTAACCAATAAGAAAATGCTTATAAAGCAACTATATGATTTTCCAACAATTTGACGCGACAAAACAATAATTATAACTTTACAAATGATCGTAAAAAAATAATAACTAAGGTGAAAAGAACTATACTAGTGTAATACAAAGAGAAATAAGATTCTTACATTAGGTTTTGACGTTTTGAATAATGTGAAGTTGTGAACTCAAAGTCATTGTGAAGTGTGAATTGAAGGCTAAAAGACAAAGACAGTATCTAGTAAGGTATTGAGATTAATATTTAATGTTTTAGTAAATTACTACAGCCTTAATGGGTTACCGATTTATCCAATAACCCAATATTGAAAACCAAAATCGAACCGGTAACTCTATAATGTTTTTGTATTAAATCATTGAAAAACCATTAATCCAGTAACCCAATAGCAATAAATCAATAATACTTTTTCCATTCGATTTATGAGTCGATTCGGATTTTACACACCGCTACCTTCCTCTGCCTTTCTATGAGCCTAGCTGAACATTGTTTCGAGTAAAGTAGTAAATCAGTGCAGTCTTAATTGGTTATTGATTTATCCAATAACCCAACATTGAAAACCAAACCGAACAGACAACCCAATAATATTTTTTTAATATAAAACCATTAACTCAATAGCAATAGACCAATAATACTTTTTCGGTTCGATTTTTCGGTCAGTTTGGTTTTTCACACTCCTACCTGTACCTCCTCCTCCACCTTTCTATGACCCTACATAAACATTGTTTCTTTCATAGTTCTCGACATTACCCACTCAAAACAAAACCGTCTAATTAACTCCCCCCATAACAAAGATGCTACCCGATAATGTAAGAATAGGTGATCTATGTCTTCCCTTGATTCTTTGCAACTGAGGAATTGATTAAGAAAATATAGTGGTATTTCTATCGGTGTAGAAAACAAGTGATACTAAAAGATTACATTTATAATTCAACAACATACCTGGTGAGATTCCACAAGTCGGGTCTGGGAGGATGGTGGGTGTATACATACCTTATTCCTACCTTTGTGGAGTAGAAGAAGTTGTTTCAATAGACCCTCAGACTCGGGAGAAAAGGAACCGTTTTTCCAAAACAGTTCTGAAGAAAAACAAATGCAAGAGTAAATAAGCTATGATAAAAGTATCTCTGAGAGTTTAAGTTATAATTCCTTTAATGATAATAGAATTAAGTAACCACCTCATTGTGTAAATCTTCCTAGCGAGAAACTTAAATGGAAAGATTTAAAAGTCAAACTAAATTATTGACCTAACATAGTGGATAAATAAAGAAAAATATTTCATCATTGATGGAAATTTAACAAAATAATAACTACTCCGTCCATCCCATTTTATGTGGCACCCTTTCCTTTTTAGTCCGTCCCAAAAAGAATGTCACATACTATAATTAGGAACAATTTAACTTTAAAATTCCCTTTTACCCTTGATAAAATGATTTAACAACCGCACAAATATCTAACTATTGTTTTAGACCATAAGTTTTAAAAATCTTCCTTTTTTTCTTAAATAACGTGTCAAATCAAATAGTATCACATAAAATGGGATGGAGGGAGTAAAATGTATATTCGTTTTTATATTTGAATATCATTTCTGAATAACCACCACATAATAAAGAAATATAAGGGACCTATCCATTTTCTTATCTCTTATAAGAGATTTAGCTACTTCAGTTTTTGAATTGAAACAGTAAAGGAAGTGAAATACCAATAGAAATCCATTGAATGAATAAAGTAAAAGTAAAACACTCCTAATCCAACTTGTATGGAGCACTTATTATGAAGAAGTAAAAACAACTTTTTTCTTTACCAAGTTCTTCTTTGAAAATATCTATAAATAATTTTTATTTTTTAAATTTGGTTTTGATTGTACATTCAAAATTGACCAGAAAGTAGGTATGACGTGATATATCTTGGGACTGTTGAAAACTTGGAATAACTCATGTTTTGAAACTGTTAATATGACAGTTGGAATAACTTTCAGCAATTCTAAAGTCCACCTTATCCATTTACTTTTGTATTCATTGTCTTACAAGAAAGTAGTCTTCATTCTCTGCTTTATTGTGTCCGATGCAAAAACTGTGTTTGCTAAATGTTTGTACAAATGGAAACCAGGAAAACTATCATTCTCATTGAACTTGCCACGTGAGCTTTATTCCTAGTATAACACCTAAATCTTGATAAATTAGGTGTTGGAATCTATTTTCTTCTCAAATTTCAACACGCCTAAACTTAATTATTTATTTCTCAGATTTCTAGATCAAATTTAGGAAGTGATTCATCAGTTGAATGATTATTGAACATATTTTAGATTTTTAAAAGATGTTAATTCATTTTAAGCTATTTGGTTATGAGATATAACTGTTGCAATTAATGCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAGGTATAAGCCTGTTGCAATTTCTTTGTATGTATCAATTGCTGCTTGATTGGCCCAGTAAATGCTACCGGAGTCCCAAAGAATTGTATTTATTCTAGTGTTCTTGTATAAATTTAATAAAAAATTTATCTTAGTTTTCCTATCGGGTGCTATACATATTCATTTTGTGTATAATTTTCACTAGGCCCAAAATTTTTTTTAAAGAATTTTCCATAATCACATTAAAATAAGTATTTCAACCTTCATCGCATGTGAATATTATGAGACTTCACAAAAAATTGCTTTTCTGCCATTGTGAACATAACCTCAATCTAGGGCTAAAGGTTAGCGAGGTTACACTTAGGTATTTTTGATATGCTCTGATTGCAATTTGGTGGTTGAATAAAGTATCATTCTTGTCATGAAATTATTGTCTCCTCCAGTAAGATCACGCACAGATTGCATCTGAAGCTCACGAAGTGACAATAGGTTTTCCATGTTTCTTCATGAAGTATTGTTGAATTTTCAAGGTGTGATGTGATTTGATGTGTAAGATAACCTAGTCCTTTCAACACCCCATCTTCTGATCCATCCCTTCCTGGGCTACGAAAATTTGTAGTTAAATATAACACACACACCACCCTCCATTTTATATGATGTACTTTGACTTGGCACAGTTTAAGAAAGAAAGAAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAATTTGTGTGGCTGTGAATCATTTCTTTAAGGGTAAAATAGACATTTTATTGTTAAATTGTTACTTAATTAGAAATATGTCATTCTTTTTGGAACTGATTAAAAAGGAAAGCAAGTCACATAATTTGGAATAGAGGGAGTAGTTATTTATACTATTGTAGAATCATTTCGTTAAGTGGAAAAAGGGTACTAACTTGATTTATGTGTTAGTTTTAGATGTATTTTTCTATGTTGTGGAGCTAAAAAGCTTTTGGTGCTTTGTTTGGGATGTAGTTTTGTATGTGCTTATGTTGATTGGAGGTATAATGCTAATGCTTTGATCATGGAGCAAAGTGAGTTTTTCAGTGTATGGAATACAATTGATAAAGATGTTTATTGCAGTATGCTTCATGTGGTTTCTTTTCCTGTCAATTCCTTATATGAGCGCAATAAATACTACATATTCGTGCTTGCGTGCCTTTGGTGTTTCTTACTGAAAGTTATTATGGCTCAACATGACAAAAATATGCATGCACAATTTCTTAGTTCCTCTTTTTCCTTTTAGTTGAATTCAGTTCAATGTCCTGCTGCTCTATTCTTCAGGTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAGGTAACTCGGCTTTGTTTCTTGAAGCAATAGTTTGTCTTCATTTGCTGCTCTAATTGCCTGATCTGTCAAGGCACAAGAACATGGTGTTAATCTAGACGTACGGTTCTCCGCTGTCCCCTTGTGATATATTACTGGAAAAGGAAATTTTAAATTTTAAAGAAATCTATGGTGTCTTATTAGCTTCTTTAACACAACAACAACAACATGAAATTTCACAAGTGGTGGTCTGGGTAGTGTGTTGTGTATGCAATGTCACTCACCTTTTTAAGGTAGAAAGTCTATGTTTGGTAGACCCTTGACTCAAGTAAAACATATAAAAATAGGTAAGAGATAATACAGTAAAGAAGAAGCTGTGTTAAATAATGGGGAAAAGAACAGTAGTAATAACAACAGATAATGCAACAATCGAAGTAAAGGAAACAACAAGTAATAATAAATTGAAGAAACCCTTCGAGGTGACCCAGAGGTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAATGAAAGCAAGGGGTTTGCCTTCTGGGTCAAGCTCGTCGCACTACGGCTTGTCAAGTGCGGGTTACCTCTCTCGTGTGGTTTGCGAGCTATTGCATACGAGCAGGTGTTTTGCCCTGTGCACCCAAGGGGTAGCGACGGCGAGTTTCCCTTGTCATAAAAGTTAAATAATAAAATTGAAGATAAGAAAGTAGGAGGAAAATGCTGATAATACTTATAAGGGAACTAAACTACGCATGATTAATTACTAAACTTCTACCTTAATTTCGACCTTCATATCTTTCTATCTAGACTCATGCCCTCGGTAAGCTGAGGGTAGTGTTCAGCAAAGCAAGTGCTTCATTGCTTTAAGTGGTGAACCGAAACGAAGTGAAGCGAGGCATGTGAAAAGAAGCATCCGCTTTTGGGCTTGAAGCATGGTGCTACCAGAAGCGGCAACTCGAGAAAAACAGCGGTTTTATTTTTTTTGACTTAATTATTGACCGATTTTAAAGGATAAAAAGAGGCGTGACTGGCCTTGTCCTTAAGAAAGTAGAACAGTAAGGTATCAGTGTACTCTTTCCTTCCAGTACCTTTTCTCTTTTCTTTTTTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTGGTACAGTGGCATTGCTAGCCTAGGTTTTTTCTTCTCTCTGTTTTTCTTTTCCCTGTTTAGCTTTGATTATTTGAATTATATGTTGCTAATTTTTTCTTCACATTGATTAAATCATCTGTTGCTGAATTGTTTTGTTTCATAACAATGTCTAAAATGTTGTTGAATTGTTTCTTAATACTTAATAGTGATAAAAATATATTGTTGATTATATTCTTAAGTCTTATCTGCCGTTAGAAATGGCTGACCCAACATGAAAATATGGGAAAAGAAGTTAGTAAGACCAATAAGACAAATTGTATGTCAGTCTGTCTATTTGGTGACAAGACAACTAATGGGGAACCTTTTCCTAGTTTTTAATATGAATATTTGCTTATATATTTTGTCTTTATGTATTTTGGTCTTTTTTCTTTTAAATTGTGCTTCACTTCAATGAAGCGAGACCTTACCGCTTTTTACTGCTTCCGCTCCCCTACACACTAGCTGAGGGTGTATCATATCCCCCCGCCCCCTGAATCAGTTGTATGAAAATTGAATAGTGACAAGTACATTGCTCTGGGACTGTGATGAAGTTTAAAAGAGGGAAGAAACGAAGGAAGTTTAAAATAGAATACACAGCCTTAATCTTCCTTTTCCTCCTGTTCCACCACAGTTAATTAGATGATACTATAACCATTGCACAAAACGTGTTGCTATTTTGTCCCACGATTGTAGATGGAAGAATGATATGTTTGCATAGAGGTTTGACAGTTCCTATCCAAGGACTGACAGTAGACAAGTATCTCAATAAGAAAATGTTTGAGATGGTACATTGCACTTATACACATAAGCATACAAGGGGAAACTGGCATTCAGTTGTATCTTTTATGTCCATTTTTTTGCAGCTAAAGTATTTTAGGTCTCATATTCATGCTGTATTTTTCTTAGCACATCTTGTCCCTTTGATTTGGTTGTTTTATTATGATACCGTAACTCAGTAGTTTTATTGAACTGAAATATTTCTATGCACATCTCTTCCCTCTCCTCTCTCTCCCTCTCTCTTGTATAATTAGCTTCCATTGTTAATTGACTTGTATTGATGGTGAGTGCACTGCTGTTTGATCTCCTTTTCAGGAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAGGTCAGGTTTCTTTTAGTAAATTTGGTGAACCTTTCTTGTTTTTTCAACACTAACCAATTTTCCTCAACTTAAAAAGTCTTAGTAAGACGACAATGCTCATGGAGTTAGATGTCTTGATTGCATAATTTAGTTCGGCTTCTTACCTAGATGTTCTAGCTTTTATCTAATTTCTGACTTGCATTACTTATCGTAAGAAAAGTACAGAACAAGAAAAAGATAAGCTGCAGAATTGCCTTCCTTTAGTAAGGTACTTGCTACTCCTTACAAATAGGAGGAAGGCCAATGATGCAGGACTCGAGGGGCCAACAGTCGAGTATCTTTCATGCATTAATGTTCTTGCTACAATAATAAAAAATCAAGTATCCTTCATGCAGTAGTTTTCTTGCTACAGTAACTGTATCTCGTTCATCTAGATCTTGGGTTTTATTTATGTAATTTTTTCTTAAATTTTCTTACAGGACTTATTTGGTTATTTCTTTTCCTTATAGGAAAGACTGGGTGCACTAGATCCAATGTGATCCGGTCCTTACCTAGAGTCTAGAGTCTACGTATATTGGGAGCTTAGTCTCAAGCTTTCATTTCTTTCCACTTGGGAATTTCTTTGTTGACAAGAATTTGGAGTCGTAGTTGTTTAGAATTAGGGTTCTTGGATTTGTTTCCTCATAAATAAAAGTAGATACAATAATGTCAGCATTCAACTTTTTGTTTATAATAATGCTGGACTATTGACATGGTACCTGTGCTGGGAGGTAGGAGGTACCATGTGGAATTATTAGTTTAGATGCACTGATGCTGGCTAGGACACAACAATTAATAGAAAAACGGATAAGGGTAAAAAATGTCCTTAAACTATGCTAAATTGAACAAAAATGCCCTGTGTTAATAGTTTGATCCTAAATTCCCCTATTGTTACTTTTGGGTAAAAACTGTCATTTTCCTGATAAATAGGATGTTTCTTTTCTTTGTAAACACATTGCTTACCTAATAAAATATTATTTTTAAAGGACCTTTTTCTTTTCTTTTGTCCTTTAAAAATTCAACTAATATAAAAGTAGAAACTAATTTTTTCCTTCTTAATCTCCTTTTTTAAATAAAAAAGAGAATTACCCTACATGTGATTTTCCTCTAAGGCATGTATTTATCAAGCATTGCCTCAGACCATCCAGGATGATGCAAATAGACGTAGAGGATAAGTGGTCATAGAAGAAAAATTAGCAATGGAATATATAGATTTGCAAGTACTGTACCTTTGCAAAGATATGATGACAAAGGAACTGGCATACGACATGTTTCATTGGTCTCTCTCATCCTCGAGTAAACTTGAACAGTTGGCGGTCTTGCTAGCACAAATGAGCAAGCGCAATAGTCGATTGGTGTTCAGTAAAAGAACAAGTAGACGAAGGAGCATCATCTAATTGTTCTGTTAAAGCATAGGTAAATTGATTGACTACCCACTCATTTTCCTCCTCCTAACTAGTAGAAATGGGGAGGTGCATCTCTGAAAATACCATTTCGGTTGACACCAAATATTTGCTGAGTTTGGTATAATGACGCCGATACCCGTTCTGAAGTTGAGAATAGCCAAGGAGAACACATTTCAATGCCATGGAAACCAAATTGGTAATAGCTTGTCGAGCATCTTGGAAATATCATGTACTTCCAAATACCTTAGGTTCCACTGGAAATAGGGACTTGTTGGGGAGTCGAACACTTAAGGCATGTTATCAACAAGTGCACTAGGTGGGATGCAATTAATTAAAAAGTTAAGTTGTAGAGACTGCATCTGTCCAAATTGTTTAGAAACCTTCATTTGGATTAGAAGTACCTTAGTTGTCTCAAGTAAATTCCTATTTTTCCTCTTAGCAACTCTATTTGAGATGGTGTATAATACATGAAGACTGATGGTGAATTCCGTGTTGTCTCATGAATGATAGAAACAATTATGGCATGTATTCTCTGGCATTATCACTCCTTAGAATAAGCAGTGAAGCATTGATTTGAGTTTTGATTTCAGCATGGGAGGCACAAAAGTGAGTAAACACTTCGAAACGACTCTTCATAAAATAAATCCAAGACATTTGAGAGAAATCGTTCACAAAGTAACAAATATATATGCCCTGTTTTGGAAACAATAGGACAGTCCCCAAACATCAAAATGAACTAATTCAAAAGCTGACTCAACTAGCTTATTAATCTTGGACCTACTGAGGTGCAACAGTGTTTTACAAATTCACATGACTTATTGTCTAAGAAGAAACATTCTGAAACTTGGGACGACTTTAATGTAGGCAAAGAAGGATCGCTTCGCCGATGATATGCTTCAAATGGAAACACACCATAGGAGTAGGCACCAAACCGAGGCTCCCACTTATTAAAAATATGAAGATCATCAGATGTATGTCCCTTACCAATTACTTGATTTGTCGTAAGATGATGAGACAAACAATGATCGGGAAAGAATGAGATATAGCAATTGAGTTCTCTTAATGATGGTTAATTTTATGTTGGGGATAGAGACCTAGTCGTTTGAGGTTATAAGTGTTGAAGAAGACAATGTTGTTAATTCTGAAAAAAGAAGACAGTGTTGTTGTTGGAATAGTAACCCTGTCCTTATATAAGCACAAGGCAAATATGGGTCATTTCACATAATTCAAGGGCTTATTGAACTCTTTTCTTTTTGTCAAAAATGTCCACGTGCTGGTAAGCATTATTTGTTGGTTAAAAAGGGCAAATCTAACCCCTTTTTACAATGATAGGGGTATATCTAACACCCCTACCACTAATGATGTTCAAATTTAGACCATTTTGCCAAGTTTAGGGGCAAATTTGGATCTTTTCACTTTTATTATTGAGTTCTAGAATATATTCAACTTGTTTGAATCTTAAAGAATTATGATTACTGTGAGGAGACACAACCCCAATTTTCAATCAACATATGCTAGTAAATCATGTCTTTTAAAAGATAATATTGCACTACTTTTCTACCCTTTTGCGTCACACTTTTATTTTTAGGATGTTCAAAAGAACAAAACCATTAAATATTTGGAAACTATTAAACATTAGTATTTTAAGCGTTAATTGCACTAAATACCCCTGTTAATGTGATTTCCTCTTGGATGCACCTCTGTATTTTAAAATTGAACACTTACAACCGTCTTAGGAGGTATATCCTTAACTATACTTGCACGTCTTAGGAGGTATATTTGTAACTAAGTATATTAAAATAGACAAACTGAAATTATAAATAAAAAGTTTTTATGTATTTATGAAATTTGAAAAGTGGATAATTCTTTTTATTGAAAATATTTATTCATGCCTTAAATTAAAAGAGAATTTTTATTTTCTTTAAATATGCATCTTTTTAAACTCTTAGATAAGAAATGACCACAAATTACTTAATAGGATGAATAAATTTTGACATAATTATTTTCTCTTTTTTTAAAAAAAGAACTATGGCAAAAAAGTTTTCATCTTTCAAGCAATTAAAATATAATGATGATATCTCAATTTCTTTTTTTGACATTTAAACCTACTATATATAATAGTAAGGGAAAAAGGTCGGAAATATATCTGAACTTTGACCGAAATTGTTGTAATGATACTAGACATTGGAAAGTACCTTTTAGCCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATTTGTCCACGTGGACATAAAAAATATTGCATAATTGTAAATAGTAATTTGTCCACGTGAGCACATATATACTTTTAAAATACACTATTAAATAGTGCAGGGGTAAAAGGTCTCTATAAAGTTCGGTATCGCAACAACAATTTGAGCCAAAGTTGAAGTATTTTTCAGACTCTTTTCCCTAATAGAAATCCTACACAAACGATACTTTATCTAAGTAAATTAACATAAGAATTTTGAAGCAGAGAATAAACAAAACAAAAATAAAAAGAAGAAATTTGTATATAATATAATAAAAATATTAAAATTAAATAAACATACAAATAAGTTACATGTTTAAAGTGCAAGAAGATTGTAGTAATAAGTGATATTTCTTATTAGGTAATTTGTGGTATTTATAATTTTAAGTTACCTTTTAATAATTATATTTTAATATACTTAGTTAATAATATACCTCGTATGAGATTTAAGTGTATGATTTTCATAGTACAAGGGGTGTACAACAACAAAACATACCCTGTGTAATTCAACGGGTGGGGTTTAGGGAGGATGGTGTATATGCAGACCTTGTCTTACCTTGTGAAGGTAAAAAGGTTGTATCCTAAACTGAATATTATGGGGGTACTTAGTGTAACTAACCTTATTTTTTGCTTTTCTTCCTGATGTTACTTGGTTGGAACCAACTTGATACAAAAACTGATCTTTTATTAAAGAGAAATAAGAAGTGACACGTGGAACTCTTACCGCATTCAATTTAAATAAGGGGCTTTTGGGACCTTGTACATAGATTTAGTGTAATTTTTTTAAATTTCAAATTCCTTGCATTGTCAAACAATGTCACATTAAAAAGGAGGGACAGAGTATAAATTTGATGGGTGGAAGGAGGTGACCGAGGATGCTCTGAGGTGGATGATTAATCCAGACATCTCCATTTGAAACCTCAGAACCTGGACTGAATTTGAATGGCTCATACATGGGTTTCTTTTATTTCTTCGGTCTTTGTTTCAACCTGGAGCTTGTCATTAAAAGGTAGGAACATCAAAAAAGAGATGAAAATCTTCTCTAAGTTCATTAGTGATCAGGAACTCAGTTTTGTAATTCCAAGTTGAGCTTTAAATTTTCGTAGGTTTGAGGTTGAAATTGAGGGGAAAAGACTTGCTAATGTATTCACTATTTTGGGAGTTTGATGAAAGTGGGAACTATTATGCTCAGAAGAATTGGCCAGAATTGGTTCATAGGCTTAGAGCTTGATGTAATGCTTCTTTGCTTAGGCAAGCTCAAGTTTGATTAGTGTTGATTTCTAGAGCTTGTGTGAGGCTTTTTACCCTTTCCTTATTTATAAAGTTAGAAGAAAATAATAAACCAGGGAAGTTTTTCTTTCTTAATATACTAAGCTTCTTCTTTGATTCTAGTTTCATGATTGTTAGGACATTACAGAGTAGCTTCATAGTGCTTCGCTTGAAAGCTTTGCTGATGTGTCTAGTATGTTGTTATTTGCTGATTGCTTTCTTAAAGATTCATGCAGTTATGAACATTAACTGTTTAACTTCTATTCATTACATACAGGAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGC</genome_strand>
        <mrna_strand>TGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGC-AAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGTGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTNCAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACC-AAAAGACGCGAAACTTTCTCCTCGTTGTTTTGC-ACAGACTTGAGCATT-AAAATGATNGTTGTCGTC-ATGCTACTCAGTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696607" ref_strand="+" ref_description="SGN-E696607 [LH_Ea09J05](-)">
      <seq>tccatgacgcagattaaacagccgccgtccctgccgctggtgaaacatccgccgtctctgacgcaggtgaaacagacgccgtctattgatcccagtgcgctctttagcggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcggaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgatagattgcttgtcgcaaatgtgggggactctagagtcgtggcttgcagagatggttcagctattcctttgtccattgatcacaagcctgacagatcggatgagcgtgaaaggatagaacaggccggtggtttcattatctgggcaggtacatggcgtgtaggtggggtccttgctgtgtctcgtgcatttggagataaaatgctaaagccatatgttgttgcagacccagagattcaggacataaaagatgctgaggcagcttcacgtaagcttattgaagaagcttattcaagggggagttcagataacatcacctgtgtggttgttcgatttgagagcgcatgaatgaaccttttaaggtctgcctacctttcctttactacaaacataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38537" stop="18449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38237" g_stop="38116" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38115" i_stop="34664" i_length="3452">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="265" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="364" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32976" g_stop="32818" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="523" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27959" g_stop="27873" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="610" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26585" g_stop="26494" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="702" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26493" i_stop="18918" i_length="7576">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18917" g_stop="18749" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="870" r_length="168" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E696607" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38237" e_stop="38116"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32818"/>
          <exon e_start="27959" e_stop="27873"/>
          <exon e_start="26585" e_stop="26494"/>
          <exon e_start="18917" e_stop="18749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAGGTTTGTTGCTTGTTGACTATTTACTATATCCAAAGTTTTCACAAACATGACTTTGGCTATCTCAAGGTCCATTAGTTCTTTTGTGGATTATCTTTGTTATAGGTAAACAAACTTTTTATAAGGGAAGTACATCAGAAAAAATGGGTAAAGGCGTAAAGCTCACAGGGACAGAGGGAGTTTTTCATTAGGTTTAGTCTGAATAGTTTGCATAGGATAACATATTCTTTGGTCTGTACAAAACTGTGATTCTGGAACTACTTTTTGTAATTTCTAGAACTTTCCACATTTTCATATCAATGGAAGTTCATTAATATATCAAAAACGTGTAAAAAAGTACATATACCTGAACAAACAAATTAAAAATAACAAAGCACATTTCAAACCTTCAAGCAATTAAGAACCTCAAACAAATTCAGACACTTGAAACAACTTTGTTACTCGATGCTAGCTTATCACAATTTATGTTAAGCATTCTTACAATCATAGTAACCACTACACTTAATTTGTCTGGCTAGTTGCTTCCGCTATGCGTTATAAATGAACTGATCATTAGGATCACATATATCAGCTTTCTATATCCTCTATTGTTTATACCCTTTGGTCTGATTGTTTGTATAATGATTTATTCAATAATTTAGAAAGCTTGTTATGTTGTCTTTTGTTTTGATTTGGCCATAGCCAGGCAGAACATATTTCTGCTTGGAAGATGTTAACTATGAGACTTTTGCAACAAAGGAATATGACTTGTATAATTTAAAAAATTAACCGATGAAGCATGTTTTGTATTGACTGACCTTAATCATATTTGTCTCCAAGGTCATTTGTCGGTGTAAAATTTTGTTATAGTCTTTTATCTGTAGGTTCTCACAAGAGTTATTAATCTGTGAAAACTGAAAAGCTTGCCCTGTTTTTCATTCAGAATAAGATATGAAGGAATCTGTGGGGTGTTTTATAATTTTTGTATATGGGTTTATCTTATGAATATAGGTTCATTATTACTCATTTAAAAAGAAAAAGAAGACTAGAAAGATAGGATGTTTCTTATGTATACTATCTAGTAAAGTCTCAATGATTTACCGTTTGCAGCCTTTACCATTTAACATTTGGGCTTTCCATCCCCCTATTATCCTTTTAACAACAACAACATCCCCTGTGAAATCTCACAAGTGAGGTCTTAGGAGGGTAAAATGTATGCATACCTTACAACTACCTCGTGGAGGTAGAGAGTCTGTTCCCGACATATTTTTATTAAGACTTTCCATATTTATGGAGTGGAACAATGACAAATCATATGGTTTGATGTAAACACATGGTGAGGTTATGCTTTTTTTGATGAAGTCACAACGGGTTTGGGTAAGTTATCGGTATGATATTCCGTAAGAAGAGAGAACTTCTTAGAAAGCACCATTAAGAATATAGATTGGAAAAAGTCCAAATATACCCATGAATTATACTATTTGGAGCAAATTTATCCTCCCATAAAAATGGCCTATATCTACCCCTATCGTTACACAAATGACTCATATATATCCTGTTCGATAGATGGAGCTCAAATACCCGTCATTGAAATATTTTTCCTAGTGTATTCATTATAAGTAAAGCCATGTGTAAAAAATTAAATCTTGATCAGATAGTAGCTGTTAAATTAAAGAATAGAAGTCCATTAATCCTAGTTTGTTTTGGCCTATTTTGCTTATTGAGGATTAATTTGATCAATTTTGGTGTTAAGATTAAAACAAATTCATTCTTTTTAAGATATTAAGCACTTACATTAAAAGTAAAGAACTACAAGTTGCAACACCGCAATTCAGAAGAACACATTTTACATATTAGTCAAAGCTCACCTAAATTTCATCCTTGGAAAGTTAATAGGGAAATAATTTGGGACATTTAAGGGAAGTTCCGATCTTTCACCTCATGAATTGATAAGGAAATGTACTTTATAATTCATTTTTGTACCGACCAAAAAGGAAATGGGTTATTCCATTTGAAATGGAGGAGGTACTTGTGGTTGAATTAGATTTGCAAGTTAAGAAAAAATCATTATGCAATTTAGGAGTTTTTTTAAAGATGAAGTAGGAATATTATTAACAAAAGAGCATTAACTAGCCCGTATACAAAAAGTAGAAAATCTTTAAAGAAAATATAATTTTTTATGAATGACACCAAATCATCTAAACAAAAAGTAACCTCACGGGTGCACCAAAGATAGCTAAGGGAAACAAGGTAGTTCTCAAGGGTAGAATTTTTCTCTATTCCATCAAAAGCTCTGCTATTCCCCTCTCTCCGTATGGTTCACATCTGTGCTATAGGGGTAATTTCATATGCCTTGCGTCTAGGGGTGTGCATCAGTCAGCTTAGTTCGGTTTTACATATTATTGATTCGATTTACAGTTTTTAATATGCTAAACCCATAAGATATTTTTATCGATTTTGGTCCTTAACGGTTTGGTTCTCGGTTTAACCAATAAGAAAATGCTTATAAAGCAACTATATGATTTTCCAACAATTTGACGCGACAAAACAATAATTATAACTTTACAAATGATCGTAAAAAAATAATAACTAAGGTGAAAAGAACTATACTAGTGTAATACAAAGAGAAATAAGATTCTTACATTAGGTTTTGACGTTTTGAATAATGTGAAGTTGTGAACTCAAAGTCATTGTGAAGTGTGAATTGAAGGCTAAAAGACAAAGACAGTATCTAGTAAGGTATTGAGATTAATATTTAATGTTTTAGTAAATTACTACAGCCTTAATGGGTTACCGATTTATCCAATAACCCAATATTGAAAACCAAAATCGAACCGGTAACTCTATAATGTTTTTGTATTAAATCATTGAAAAACCATTAATCCAGTAACCCAATAGCAATAAATCAATAATACTTTTTCCATTCGATTTATGAGTCGATTCGGATTTTACACACCGCTACCTTCCTCTGCCTTTCTATGAGCCTAGCTGAACATTGTTTCGAGTAAAGTAGTAAATCAGTGCAGTCTTAATTGGTTATTGATTTATCCAATAACCCAACATTGAAAACCAAACCGAACAGACAACCCAATAATATTTTTTTAATATAAAACCATTAACTCAATAGCAATAGACCAATAATACTTTTTCGGTTCGATTTTTCGGTCAGTTTGGTTTTTCACACTCCTACCTGTACCTCCTCCTCCACCTTTCTATGACCCTACATAAACATTGTTTCTTTCATAGTTCTCGACATTACCCACTCAAAACAAAACCGTCTAATTAACTCCCCCCATAACAAAGATGCTACCCGATAATGTAAGAATAGGTGATCTATGTCTTCCCTTGATTCTTTGCAACTGAGGAATTGATTAAGAAAATATAGTGGTATTTCTATCGGTGTAGAAAACAAGTGATACTAAAAGATTACATTTATAATTCAACAACATACCTGGTGAGATTCCACAAGTCGGGTCTGGGAGGATGGTGGGTGTATACATACCTTATTCCTACCTTTGTGGAGTAGAAGAAGTTGTTTCAATAGACCCTCAGACTCGGGAGAAAAGGAACCGTTTTTCCAAAACAGTTCTGAAGAAAAACAAATGCAAGAGTAAATAAGCTATGATAAAAGTATCTCTGAGAGTTTAAGTTATAATTCCTTTAATGATAATAGAATTAAGTAACCACCTCATTGTGTAAATCTTCCTAGCGAGAAACTTAAATGGAAAGATTTAAAAGTCAAACTAAATTATTGACCTAACATAGTGGATAAATAAAGAAAAATATTTCATCATTGATGGAAATTTAACAAAATAATAACTACTCCGTCCATCCCATTTTATGTGGCACCCTTTCCTTTTTAGTCCGTCCCAAAAAGAATGTCACATACTATAATTAGGAACAATTTAACTTTAAAATTCCCTTTTACCCTTGATAAAATGATTTAACAACCGCACAAATATCTAACTATTGTTTTAGACCATAAGTTTTAAAAATCTTCCTTTTTTTCTTAAATAACGTGTCAAATCAAATAGTATCACATAAAATGGGATGGAGGGAGTAAAATGTATATTCGTTTTTATATTTGAATATCATTTCTGAATAACCACCACATAATAAAGAAATATAAGGGACCTATCCATTTTCTTATCTCTTATAAGAGATTTAGCTACTTCAGTTTTTGAATTGAAACAGTAAAGGAAGTGAAATACCAATAGAAATCCATTGAATGAATAAAGTAAAAGTAAAACACTCCTAATCCAACTTGTATGGAGCACTTATTATGAAGAAGTAAAAACAACTTTTTTCTTTACCAAGTTCTTCTTTGAAAATATCTATAAATAATTTTTATTTTTTAAATTTGGTTTTGATTGTACATTCAAAATTGACCAGAAAGTAGGTATGACGTGATATATCTTGGGACTGTTGAAAACTTGGAATAACTCATGTTTTGAAACTGTTAATATGACAGTTGGAATAACTTTCAGCAATTCTAAAGTCCACCTTATCCATTTACTTTTGTATTCATTGTCTTACAAGAAAGTAGTCTTCATTCTCTGCTTTATTGTGTCCGATGCAAAAACTGTGTTTGCTAAATGTTTGTACAAATGGAAACCAGGAAAACTATCATTCTCATTGAACTTGCCACGTGAGCTTTATTCCTAGTATAACACCTAAATCTTGATAAATTAGGTGTTGGAATCTATTTTCTTCTCAAATTTCAACACGCCTAAACTTAATTATTTATTTCTCAGATTTCTAGATCAAATTTAGGAAGTGATTCATCAGTTGAATGATTATTGAACATATTTTAGATTTTTAAAAGATGTTAATTCATTTTAAGCTATTTGGTTATGAGATATAACTGTTGCAATTAATGCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAGGTATAAGCCTGTTGCAATTTCTTTGTATGTATCAATTGCTGCTTGATTGGCCCAGTAAATGCTACCGGAGTCCCAAAGAATTGTATTTATTCTAGTGTTCTTGTATAAATTTAATAAAAAATTTATCTTAGTTTTCCTATCGGGTGCTATACATATTCATTTTGTGTATAATTTTCACTAGGCCCAAAATTTTTTTTAAAGAATTTTCCATAATCACATTAAAATAAGTATTTCAACCTTCATCGCATGTGAATATTATGAGACTTCACAAAAAATTGCTTTTCTGCCATTGTGAACATAACCTCAATCTAGGGCTAAAGGTTAGCGAGGTTACACTTAGGTATTTTTGATATGCTCTGATTGCAATTTGGTGGTTGAATAAAGTATCATTCTTGTCATGAAATTATTGTCTCCTCCAGTAAGATCACGCACAGATTGCATCTGAAGCTCACGAAGTGACAATAGGTTTTCCATGTTTCTTCATGAAGTATTGTTGAATTTTCAAGGTGTGATGTGATTTGATGTGTAAGATAACCTAGTCCTTTCAACACCCCATCTTCTGATCCATCCCTTCCTGGGCTACGAAAATTTGTAGTTAAATATAACACACACACCACCCTCCATTTTATATGATGTACTTTGACTTGGCACAGTTTAAGAAAGAAAGAAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAATTTGTGTGGCTGTGAATCATTTCTTTAAGGGTAAAATAGACATTTTATTGTTAAATTGTTACTTAATTAGAAATATGTCATTCTTTTTGGAACTGATTAAAAAGGAAAGCAAGTCACATAATTTGGAATAGAGGGAGTAGTTATTTATACTATTGTAGAATCATTTCGTTAAGTGGAAAAAGGGTACTAACTTGATTTATGTGTTAGTTTTAGATGTATTTTTCTATGTTGTGGAGCTAAAAAGCTTTTGGTGCTTTGTTTGGGATGTAGTTTTGTATGTGCTTATGTTGATTGGAGGTATAATGCTAATGCTTTGATCATGGAGCAAAGTGAGTTTTTCAGTGTATGGAATACAATTGATAAAGATGTTTATTGCAGTATGCTTCATGTGGTTTCTTTTCCTGTCAATTCCTTATATGAGCGCAATAAATACTACATATTCGTGCTTGCGTGCCTTTGGTGTTTCTTACTGAAAGTTATTATGGCTCAACATGACAAAAATATGCATGCACAATTTCTTAGTTCCTCTTTTTCCTTTTAGTTGAATTCAGTTCAATGTCCTGCTGCTCTATTCTTCAGGTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAGGTAACTCGGCTTTGTTTCTTGAAGCAATAGTTTGTCTTCATTTGCTGCTCTAATTGCCTGATCTGTCAAGGCACAAGAACATGGTGTTAATCTAGACGTACGGTTCTCCGCTGTCCCCTTGTGATATATTACTGGAAAAGGAAATTTTAAATTTTAAAGAAATCTATGGTGTCTTATTAGCTTCTTTAACACAACAACAACAACATGAAATTTCACAAGTGGTGGTCTGGGTAGTGTGTTGTGTATGCAATGTCACTCACCTTTTTAAGGTAGAAAGTCTATGTTTGGTAGACCCTTGACTCAAGTAAAACATATAAAAATAGGTAAGAGATAATACAGTAAAGAAGAAGCTGTGTTAAATAATGGGGAAAAGAACAGTAGTAATAACAACAGATAATGCAACAATCGAAGTAAAGGAAACAACAAGTAATAATAAATTGAAGAAACCCTTCGAGGTGACCCAGAGGTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAATGAAAGCAAGGGGTTTGCCTTCTGGGTCAAGCTCGTCGCACTACGGCTTGTCAAGTGCGGGTTACCTCTCTCGTGTGGTTTGCGAGCTATTGCATACGAGCAGGTGTTTTGCCCTGTGCACCCAAGGGGTAGCGACGGCGAGTTTCCCTTGTCATAAAAGTTAAATAATAAAATTGAAGATAAGAAAGTAGGAGGAAAATGCTGATAATACTTATAAGGGAACTAAACTACGCATGATTAATTACTAAACTTCTACCTTAATTTCGACCTTCATATCTTTCTATCTAGACTCATGCCCTCGGTAAGCTGAGGGTAGTGTTCAGCAAAGCAAGTGCTTCATTGCTTTAAGTGGTGAACCGAAACGAAGTGAAGCGAGGCATGTGAAAAGAAGCATCCGCTTTTGGGCTTGAAGCATGGTGCTACCAGAAGCGGCAACTCGAGAAAAACAGCGGTTTTATTTTTTTTGACTTAATTATTGACCGATTTTAAAGGATAAAAAGAGGCGTGACTGGCCTTGTCCTTAAGAAAGTAGAACAGTAAGGTATCAGTGTACTCTTTCCTTCCAGTACCTTTTCTCTTTTCTTTTTTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTGGTACAGTGGCATTGCTAGCCTAGGTTTTTTCTTCTCTCTGTTTTTCTTTTCCCTGTTTAGCTTTGATTATTTGAATTATATGTTGCTAATTTTTTCTTCACATTGATTAAATCATCTGTTGCTGAATTGTTTTGTTTCATAACAATGTCTAAAATGTTGTTGAATTGTTTCTTAATACTTAATAGTGATAAAAATATATTGTTGATTATATTCTTAAGTCTTATCTGCCGTTAGAAATGGCTGACCCAACATGAAAATATGGGAAAAGAAGTTAGTAAGACCAATAAGACAAATTGTATGTCAGTCTGTCTATTTGGTGACAAGACAACTAATGGGGAACCTTTTCCTAGTTTTTAATATGAATATTTGCTTATATATTTTGTCTTTATGTATTTTGGTCTTTTTTCTTTTAAATTGTGCTTCACTTCAATGAAGCGAGACCTTACCGCTTTTTACTGCTTCCGCTCCCCTACACACTAGCTGAGGGTGTATCATATCCCCCCGCCCCCTGAATCAGTTGTATGAAAATTGAATAGTGACAAGTACATTGCTCTGGGACTGTGATGAAGTTTAAAAGAGGGAAGAAACGAAGGAAGTTTAAAATAGAATACACAGCCTTAATCTTCCTTTTCCTCCTGTTCCACCACAGTTAATTAGATGATACTATAACCATTGCACAAAACGTGTTGCTATTTTGTCCCACGATTGTAGATGGAAGAATGATATGTTTGCATAGAGGTTTGACAGTTCCTATCCAAGGACTGACAGTAGACAAGTATCTCAATAAGAAAATGTTTGAGATGGTACATTGCACTTATACACATAAGCATACAAGGGGAAACTGGCATTCAGTTGTATCTTTTATGTCCATTTTTTTGCAGCTAAAGTATTTTAGGTCTCATATTCATGCTGTATTTTTCTTAGCACATCTTGTCCCTTTGATTTGGTTGTTTTATTATGATACCGTAACTCAGTAGTTTTATTGAACTGAAATATTTCTATGCACATCTCTTCCCTCTCCTCTCTCTCCCTCTCTCTTGTATAATTAGCTTCCATTGTTAATTGACTTGTATTGATGGTGAGTGCACTGCTGTTTGATCTCCTTTTCAGGAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAGGTCAGGTTTCTTTTAGTAAATTTGGTGAACCTTTCTTGTTTTTTCAACACTAACCAATTTTCCTCAACTTAAAAAGTCTTAGTAAGACGACAATGCTCATGGAGTTAGATGTCTTGATTGCATAATTTAGTTCGGCTTCTTACCTAGATGTTCTAGCTTTTATCTAATTTCTGACTTGCATTACTTATCGTAAGAAAAGTACAGAACAAGAAAAAGATAAGCTGCAGAATTGCCTTCCTTTAGTAAGGTACTTGCTACTCCTTACAAATAGGAGGAAGGCCAATGATGCAGGACTCGAGGGGCCAACAGTCGAGTATCTTTCATGCATTAATGTTCTTGCTACAATAATAAAAAATCAAGTATCCTTCATGCAGTAGTTTTCTTGCTACAGTAACTGTATCTCGTTCATCTAGATCTTGGGTTTTATTTATGTAATTTTTTCTTAAATTTTCTTACAGGACTTATTTGGTTATTTCTTTTCCTTATAGGAAAGACTGGGTGCACTAGATCCAATGTGATCCGGTCCTTACCTAGAGTCTAGAGTCTACGTATATTGGGAGCTTAGTCTCAAGCTTTCATTTCTTTCCACTTGGGAATTTCTTTGTTGACAAGAATTTGGAGTCGTAGTTGTTTAGAATTAGGGTTCTTGGATTTGTTTCCTCATAAATAAAAGTAGATACAATAATGTCAGCATTCAACTTTTTGTTTATAATAATGCTGGACTATTGACATGGTACCTGTGCTGGGAGGTAGGAGGTACCATGTGGAATTATTAGTTTAGATGCACTGATGCTGGCTAGGACACAACAATTAATAGAAAAACGGATAAGGGTAAAAAATGTCCTTAAACTATGCTAAATTGAACAAAAATGCCCTGTGTTAATAGTTTGATCCTAAATTCCCCTATTGTTACTTTTGGGTAAAAACTGTCATTTTCCTGATAAATAGGATGTTTCTTTTCTTTGTAAACACATTGCTTACCTAATAAAATATTATTTTTAAAGGACCTTTTTCTTTTCTTTTGTCCTTTAAAAATTCAACTAATATAAAAGTAGAAACTAATTTTTTCCTTCTTAATCTCCTTTTTTAAATAAAAAAGAGAATTACCCTACATGTGATTTTCCTCTAAGGCATGTATTTATCAAGCATTGCCTCAGACCATCCAGGATGATGCAAATAGACGTAGAGGATAAGTGGTCATAGAAGAAAAATTAGCAATGGAATATATAGATTTGCAAGTACTGTACCTTTGCAAAGATATGATGACAAAGGAACTGGCATACGACATGTTTCATTGGTCTCTCTCATCCTCGAGTAAACTTGAACAGTTGGCGGTCTTGCTAGCACAAATGAGCAAGCGCAATAGTCGATTGGTGTTCAGTAAAAGAACAAGTAGACGAAGGAGCATCATCTAATTGTTCTGTTAAAGCATAGGTAAATTGATTGACTACCCACTCATTTTCCTCCTCCTAACTAGTAGAAATGGGGAGGTGCATCTCTGAAAATACCATTTCGGTTGACACCAAATATTTGCTGAGTTTGGTATAATGACGCCGATACCCGTTCTGAAGTTGAGAATAGCCAAGGAGAACACATTTCAATGCCATGGAAACCAAATTGGTAATAGCTTGTCGAGCATCTTGGAAATATCATGTACTTCCAAATACCTTAGGTTCCACTGGAAATAGGGACTTGTTGGGGAGTCGAACACTTAAGGCATGTTATCAACAAGTGCACTAGGTGGGATGCAATTAATTAAAAAGTTAAGTTGTAGAGACTGCATCTGTCCAAATTGTTTAGAAACCTTCATTTGGATTAGAAGTACCTTAGTTGTCTCAAGTAAATTCCTATTTTTCCTCTTAGCAACTCTATTTGAGATGGTGTATAATACATGAAGACTGATGGTGAATTCCGTGTTGTCTCATGAATGATAGAAACAATTATGGCATGTATTCTCTGGCATTATCACTCCTTAGAATAAGCAGTGAAGCATTGATTTGAGTTTTGATTTCAGCATGGGAGGCACAAAAGTGAGTAAACACTTCGAAACGACTCTTCATAAAATAAATCCAAGACATTTGAGAGAAATCGTTCACAAAGTAACAAATATATATGCCCTGTTTTGGAAACAATAGGACAGTCCCCAAACATCAAAATGAACTAATTCAAAAGCTGACTCAACTAGCTTATTAATCTTGGACCTACTGAGGTGCAACAGTGTTTTACAAATTCACATGACTTATTGTCTAAGAAGAAACATTCTGAAACTTGGGACGACTTTAATGTAGGCAAAGAAGGATCGCTTCGCCGATGATATGCTTCAAATGGAAACACACCATAGGAGTAGGCACCAAACCGAGGCTCCCACTTATTAAAAATATGAAGATCATCAGATGTATGTCCCTTACCAATTACTTGATTTGTCGTAAGATGATGAGACAAACAATGATCGGGAAAGAATGAGATATAGCAATTGAGTTCTCTTAATGATGGTTAATTTTATGTTGGGGATAGAGACCTAGTCGTTTGAGGTTATAAGTGTTGAAGAAGACAATGTTGTTAATTCTGAAAAAAGAAGACAGTGTTGTTGTTGGAATAGTAACCCTGTCCTTATATAAGCACAAGGCAAATATGGGTCATTTCACATAATTCAAGGGCTTATTGAACTCTTTTCTTTTTGTCAAAAATGTCCACGTGCTGGTAAGCATTATTTGTTGGTTAAAAAGGGCAAATCTAACCCCTTTTTACAATGATAGGGGTATATCTAACACCCCTACCACTAATGATGTTCAAATTTAGACCATTTTGCCAAGTTTAGGGGCAAATTTGGATCTTTTCACTTTTATTATTGAGTTCTAGAATATATTCAACTTGTTTGAATCTTAAAGAATTATGATTACTGTGAGGAGACACAACCCCAATTTTCAATCAACATATGCTAGTAAATCATGTCTTTTAAAAGATAATATTGCACTACTTTTCTACCCTTTTGCGTCACACTTTTATTTTTAGGATGTTCAAAAGAACAAAACCATTAAATATTTGGAAACTATTAAACATTAGTATTTTAAGCGTTAATTGCACTAAATACCCCTGTTAATGTGATTTCCTCTTGGATGCACCTCTGTATTTTAAAATTGAACACTTACAACCGTCTTAGGAGGTATATCCTTAACTATACTTGCACGTCTTAGGAGGTATATTTGTAACTAAGTATATTAAAATAGACAAACTGAAATTATAAATAAAAAGTTTTTATGTATTTATGAAATTTGAAAAGTGGATAATTCTTTTTATTGAAAATATTTATTCATGCCTTAAATTAAAAGAGAATTTTTATTTTCTTTAAATATGCATCTTTTTAAACTCTTAGATAAGAAATGACCACAAATTACTTAATAGGATGAATAAATTTTGACATAATTATTTTCTCTTTTTTTAAAAAAAGAACTATGGCAAAAAAGTTTTCATCTTTCAAGCAATTAAAATATAATGATGATATCTCAATTTCTTTTTTTGACATTTAAACCTACTATATATAATAGTAAGGGAAAAAGGTCGGAAATATATCTGAACTTTGACCGAAATTGTTGTAATGATACTAGACATTGGAAAGTACCTTTTAGCCCTGCACTATTTAATAGTGTATTTTAAAGGTATATATTTGTCCACGTGGACATAAAAAATATTGCATAATTGTAAATAGTAATTTGTCCACGTGAGCACATATATACTTTTAAAATACACTATTAAATAGTGCAGGGGTAAAAGGTCTCTATAAAGTTCGGTATCGCAACAACAATTTGAGCCAAAGTTGAAGTATTTTTCAGACTCTTTTCCCTAATAGAAATCCTACACAAACGATACTTTATCTAAGTAAATTAACATAAGAATTTTGAAGCAGAGAATAAACAAAACAAAAATAAAAAGAAGAAATTTGTATATAATATAATAAAAATATTAAAATTAAATAAACATACAAATAAGTTACATGTTTAAAGTGCAAGAAGATTGTAGTAATAAGTGATATTTCTTATTAGGTAATTTGTGGTATTTATAATTTTAAGTTACCTTTTAATAATTATATTTTAATATACTTAGTTAATAATATACCTCGTATGAGATTTAAGTGTATGATTTTCATAGTACAAGGGGTGTACAACAACAAAACATACCCTGTGTAATTCAACGGGTGGGGTTTAGGGAGGATGGTGTATATGCAGACCTTGTCTTACCTTGTGAAGGTAAAAAGGTTGTATCCTAAACTGAATATTATGGGGGTACTTAGTGTAACTAACCTTATTTTTTGCTTTTCTTCCTGATGTTACTTGGTTGGAACCAACTTGATACAAAAACTGATCTTTTATTAAAGAGAAATAAGAAGTGACACGTGGAACTCTTACCGCATTCAATTTAAATAAGGGGCTTTTGGGACCTTGTACATAGATTTAGTGTAATTTTTTTAAATTTCAAATTCCTTGCATTGTCAAACAATGTCACATTAAAAAGGAGGGACAGAGTATAAATTTGATGGGTGGAAGGAGGTGACCGAGGATGCTCTGAGGTGGATGATTAATCCAGACATCTCCATTTGAAACCTCAGAACCTGGACTGAATTTGAATGGCTCATACATGGGTTTCTTTTATTTCTTCGGTCTTTGTTTCAACCTGGAGCTTGTCATTAAAAGGTAGGAACATCAAAAAAGAGATGAAAATCTTCTCTAAGTTCATTAGTGATCAGGAACTCAGTTTTGTAATTCCAAGTTGAGCTTTAAATTTTCGTAGGTTTGAGGTTGAAATTGAGGGGAAAAGACTTGCTAATGTATTCACTATTTTGGGAGTTTGATGAAAGTGGGAACTATTATGCTCAGAAGAATTGGCCAGAATTGGTTCATAGGCTTAGAGCTTGATGTAATGCTTCTTTGCTTAGGCAAGCTCAAGTTTGATTAGTGTTGATTTCTAGAGCTTGTGTGAGGCTTTTTACCCTTTCCTTATTTATAAAGTTAGAAGAAAATAATAAACCAGGGAAGTTTTTCTTTCTTAATATACTAAGCTTCTTCTTTGATTCTAGTTTCATGATTGTTAGGACATTACAGAGTAGCTTCATAGTGCTTCGCTTGAAAGCTTTGCTGATGTGTCTAGTATGTTGTTATTTGCTGATTGCTTTCTTAAAGATTCATGCAGTTATGAACATTAACTGTTTAACTTCTATTCATTACATACAGGAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAA</genome_strand>
        <mrna_strand>TCCATGACGCAGATTAAACAGCCGCCGTCCCTGCCGCTGGTGAAACATCCGCCGTCTCTGACGCAGGTGAAACAGACGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCGGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCGGATGAGCGTGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGCGTGTAGGTGGGGTCCTTGCTGTGTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTTGCAGACCCAGAGATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAGAGCGCATGAATGAACCTTTTAAGGTCTGCCTACCTTTCCTTTAC-TACAAACATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242964" ref_strand="+" ref_description="SGN-E242964 [cLED-31-D20]">
      <seq>taaatttcaaattccttgcattgtcaaacaatgtcacattaaaaaggagggacagagtataaatttgatgggtggaaggaggtgaccgaggatgctctgaggtggatgattaatccagacatctccatttgaaacctcagaacctggactgaatttgaatggctcatacatgggtttcttttatttcttcggtctttgtttcaacctggagcttgtcattaaaaggtaggaatatcaaaaaagagatgaaaatcttctctaagttcattagtgatcaggaactcagttttgtaattccaagttgagctttaaattttcgtaggtttgaggttgaaattgaggggaaaagacttgctaatgtattcactattttgggagtttgatgaaagtgggaactattatgctcagaagaattggccagaattggttcataggcttagagcttgatgtaatgcttctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="20000" stop="18938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19700" g_stop="19238" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E242964" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19700" e_stop="19238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTTCAAATTCCTTGCATTGTCAAACAATGTCACATTAAAAAGGAGGGACAGAGTATAAATTTGATGGGTGGAAGGAGGTGACCGAGGATGCTCTGAGGTGGATGATTAATCCAGACATCTCCATTTGAAACCTCAGAACCTGGACTGAATTTGAATGGCTCATACATGGGTTTCTTTTATTTCTTCGGTCTTTGTTTCAACCTGGAGCTTGTCATTAAAAGGTAGGAACATCAAAAAAGAGATGAAAATCTTCTCTAAGTTCATTAGTGATCAGGAACTCAGTTTTGTAATTCCAAGTTGAGCTTTAAATTTTCGTAGGTTTGAGGTTGAAATTGAGGGGAAAAGACTTGCTAATGTATTCACTATTTTGGGAGTTTGATGAAAGTGGGAACTATTATGCTCAGAAGAATTGGCCAGAATTGGTTCATAGGCTTAGAGCTTGATGTAATGCTTCTTTGC</genome_strand>
        <mrna_strand>TAAATTTCAAATTCCTTGCATTGTCAAACAATGTCACATTAAAAAGGAGGGACAGAGTATAAATTTGATGGGTGGAAGGAGGTGACCGAGGATGCTCTGAGGTGGATGATTAATCCAGACATCTCCATTTGAAACCTCAGAACCTGGACTGAATTTGAATGGCTCATACATGGGTTTCTTTTATTTCTTCGGTCTTTGTTTCAACCTGGAGCTTGTCATTAAAAGGTAGGAATATCAAAAAAGAGATGAAAATCTTCTCTAAGTTCATTAGTGATCAGGAACTCAGTTTTGTAATTCCAAGTTGAGCTTTAAATTTTCGTAGGTTTGAGGTTGAAATTGAGGGGAAAAGACTTGCTAATGTATTCACTATTTTGGGAGTTTGATGAAAGTGGGAACTATTATGCTCAGAAGAATTGGCCAGAATTGGTTCATAGGCTTAGAGCTTGATGTAATGCTTCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376980" ref_strand="+" ref_description="SGN-E376980 [TUS-20-O15]">
      <seq>tggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgatagattgcttgtcgcaaatgtgggggactctagagtcgtggcttgcagagatggttcagctattcctttgtccattgatcacaagcctgacagatcagatgagcgtgaaaggatagaacaggccggtggtttcattatctgggcaggtacatggcgtgtaggtggggtccttgctgtttctcgtgcatttggagataaaatgctaaagccatatgttgtggcagacccagagattcaggaagaagaaattgatggtgtacaatttttgatagttgcgagtgatgggctttggaatgtcctctctaacgaggaggccgtgaccattgtgcaggacataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="34954" stop="18610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34654" g_stop="34521" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="233" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32976" g_stop="32818" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="391" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27959" g_stop="27873" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="478" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26585" g_stop="26494" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="570" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26493" i_stop="24236" i_length="2258">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24235" g_stop="24164" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="642" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24163" i_stop="23893" i_length="271">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.388" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23892" g_stop="23865" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="671" r_length="29" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E376980" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34654" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32818"/>
          <exon e_start="27959" e_stop="27873"/>
          <exon e_start="26585" e_stop="26494"/>
          <exon e_start="24235" e_stop="24164"/>
          <exon e_start="23892" e_stop="23865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAGGTTTGTTGCTTGTTGACTATTTACTATATCCAAAGTTTTCACAAACATGACTTTGGCTATCTCAAGGTCCATTAGTTCTTTTGTGGATTATCTTTGTTATAGGTAAACAAACTTTTTATAAGGGAAGTACATCAGAAAAAATGGGTAAAGGCGTAAAGCTCACAGGGACAGAGGGAGTTTTTCATTAGGTTTAGTCTGAATAGTTTGCATAGGATAACATATTCTTTGGTCTGTACAAAACTGTGATTCTGGAACTACTTTTTGTAATTTCTAGAACTTTCCACATTTTCATATCAATGGAAGTTCATTAATATATCAAAAACGTGTAAAAAAGTACATATACCTGAACAAACAAATTAAAAATAACAAAGCACATTTCAAACCTTCAAGCAATTAAGAACCTCAAACAAATTCAGACACTTGAAACAACTTTGTTACTCGATGCTAGCTTATCACAATTTATGTTAAGCATTCTTACAATCATAGTAACCACTACACTTAATTTGTCTGGCTAGTTGCTTCCGCTATGCGTTATAAATGAACTGATCATTAGGATCACATATATCAGCTTTCTATATCCTCTATTGTTTATACCCTTTGGTCTGATTGTTTGTATAATGATTTATTCAATAATTTAGAAAGCTTGTTATGTTGTCTTTTGTTTTGATTTGGCCATAGCCAGGCAGAACATATTTCTGCTTGGAAGATGTTAACTATGAGACTTTTGCAACAAAGGAATATGACTTGTATAATTTAAAAAATTAACCGATGAAGCATGTTTTGTATTGACTGACCTTAATCATATTTGTCTCCAAGGTCATTTGTCGGTGTAAAATTTTGTTATAGTCTTTTATCTGTAGGTTCTCACAAGAGTTATTAATCTGTGAAAACTGAAAAGCTTGCCCTGTTTTTCATTCAGAATAAGATATGAAGGAATCTGTGGGGTGTTTTATAATTTTTGTATATGGGTTTATCTTATGAATATAGGTTCATTATTACTCATTTAAAAAGAAAAAGAAGACTAGAAAGATAGGATGTTTCTTATGTATACTATCTAGTAAAGTCTCAATGATTTACCGTTTGCAGCCTTTACCATTTAACATTTGGGCTTTCCATCCCCCTATTATCCTTTTAACAACAACAACATCCCCTGTGAAATCTCACAAGTGAGGTCTTAGGAGGGTAAAATGTATGCATACCTTACAACTACCTCGTGGAGGTAGAGAGTCTGTTCCCGACATATTTTTATTAAGACTTTCCATATTTATGGAGTGGAACAATGACAAATCATATGGTTTGATGTAAACACATGGTGAGGTTATGCTTTTTTTGATGAAGTCACAACGGGTTTGGGTAAGTTATCGGTATGATATTCCGTAAGAAGAGAGAACTTCTTAGAAAGCACCATTAAGAATATAGATTGGAAAAAGTCCAAATATACCCATGAATTATACTATTTGGAGCAAATTTATCCTCCCATAAAAATGGCCTATATCTACCCCTATCGTTACACAAATGACTCATATATATCCTGTTCGATAGATGGAGCTCAAATACCCGTCATTGAAATATTTTTCCTAGTGTATTCATTATAAGTAAAGCCATGTGTAAAAAATTAAATCTTGATCAGATAGTAGCTGTTAAATTAAAGAATAGAAGTCCATTAATCCTAGTTTGTTTTGGCCTATTTTGCTTATTGAGGATTAATTTGATCAATTTTGGTGTTAAGATTAAAACAAATTCATTCTTTTTAAGATATTAAGCACTTACATTAAAAGTAAAGAACTACAAGTTGCAACACCGCAATTCAGAAGAACACATTTTACATATTAGTCAAAGCTCACCTAAATTTCATCCTTGGAAAGTTAATAGGGAAATAATTTGGGACATTTAAGGGAAGTTCCGATCTTTCACCTCATGAATTGATAAGGAAATGTACTTTATAATTCATTTTTGTACCGACCAAAAAGGAAATGGGTTATTCCATTTGAAATGGAGGAGGTACTTGTGGTTGAATTAGATTTGCAAGTTAAGAAAAAATCATTATGCAATTTAGGAGTTTTTTTAAAGATGAAGTAGGAATATTATTAACAAAAGAGCATTAACTAGCCCGTATACAAAAAGTAGAAAATCTTTAAAGAAAATATAATTTTTTATGAATGACACCAAATCATCTAAACAAAAAGTAACCTCACGGGTGCACCAAAGATAGCTAAGGGAAACAAGGTAGTTCTCAAGGGTAGAATTTTTCTCTATTCCATCAAAAGCTCTGCTATTCCCCTCTCTCCGTATGGTTCACATCTGTGCTATAGGGGTAATTTCATATGCCTTGCGTCTAGGGGTGTGCATCAGTCAGCTTAGTTCGGTTTTACATATTATTGATTCGATTTACAGTTTTTAATATGCTAAACCCATAAGATATTTTTATCGATTTTGGTCCTTAACGGTTTGGTTCTCGGTTTAACCAATAAGAAAATGCTTATAAAGCAACTATATGATTTTCCAACAATTTGACGCGACAAAACAATAATTATAACTTTACAAATGATCGTAAAAAAATAATAACTAAGGTGAAAAGAACTATACTAGTGTAATACAAAGAGAAATAAGATTCTTACATTAGGTTTTGACGTTTTGAATAATGTGAAGTTGTGAACTCAAAGTCATTGTGAAGTGTGAATTGAAGGCTAAAAGACAAAGACAGTATCTAGTAAGGTATTGAGATTAATATTTAATGTTTTAGTAAATTACTACAGCCTTAATGGGTTACCGATTTATCCAATAACCCAATATTGAAAACCAAAATCGAACCGGTAACTCTATAATGTTTTTGTATTAAATCATTGAAAAACCATTAATCCAGTAACCCAATAGCAATAAATCAATAATACTTTTTCCATTCGATTTATGAGTCGATTCGGATTTTACACACCGCTACCTTCCTCTGCCTTTCTATGAGCCTAGCTGAACATTGTTTCGAGTAAAGTAGTAAATCAGTGCAGTCTTAATTGGTTATTGATTTATCCAATAACCCAACATTGAAAACCAAACCGAACAGACAACCCAATAATATTTTTTTAATATAAAACCATTAACTCAATAGCAATAGACCAATAATACTTTTTCGGTTCGATTTTTCGGTCAGTTTGGTTTTTCACACTCCTACCTGTACCTCCTCCTCCACCTTTCTATGACCCTACATAAACATTGTTTCTTTCATAGTTCTCGACATTACCCACTCAAAACAAAACCGTCTAATTAACTCCCCCCATAACAAAGATGCTACCCGATAATGTAAGAATAGGTGATCTATGTCTTCCCTTGATTCTTTGCAACTGAGGAATTGATTAAGAAAATATAGTGGTATTTCTATCGGTGTAGAAAACAAGTGATACTAAAAGATTACATTTATAATTCAACAACATACCTGGTGAGATTCCACAAGTCGGGTCTGGGAGGATGGTGGGTGTATACATACCTTATTCCTACCTTTGTGGAGTAGAAGAAGTTGTTTCAATAGACCCTCAGACTCGGGAGAAAAGGAACCGTTTTTCCAAAACAGTTCTGAAGAAAAACAAATGCAAGAGTAAATAAGCTATGATAAAAGTATCTCTGAGAGTTTAAGTTATAATTCCTTTAATGATAATAGAATTAAGTAACCACCTCATTGTGTAAATCTTCCTAGCGAGAAACTTAAATGGAAAGATTTAAAAGTCAAACTAAATTATTGACCTAACATAGTGGATAAATAAAGAAAAATATTTCATCATTGATGGAAATTTAACAAAATAATAACTACTCCGTCCATCCCATTTTATGTGGCACCCTTTCCTTTTTAGTCCGTCCCAAAAAGAATGTCACATACTATAATTAGGAACAATTTAACTTTAAAATTCCCTTTTACCCTTGATAAAATGATTTAACAACCGCACAAATATCTAACTATTGTTTTAGACCATAAGTTTTAAAAATCTTCCTTTTTTTCTTAAATAACGTGTCAAATCAAATAGTATCACATAAAATGGGATGGAGGGAGTAAAATGTATATTCGTTTTTATATTTGAATATCATTTCTGAATAACCACCACATAATAAAGAAATATAAGGGACCTATCCATTTTCTTATCTCTTATAAGAGATTTAGCTACTTCAGTTTTTGAATTGAAACAGTAAAGGAAGTGAAATACCAATAGAAATCCATTGAATGAATAAAGTAAAAGTAAAACACTCCTAATCCAACTTGTATGGAGCACTTATTATGAAGAAGTAAAAACAACTTTTTTCTTTACCAAGTTCTTCTTTGAAAATATCTATAAATAATTTTTATTTTTTAAATTTGGTTTTGATTGTACATTCAAAATTGACCAGAAAGTAGGTATGACGTGATATATCTTGGGACTGTTGAAAACTTGGAATAACTCATGTTTTGAAACTGTTAATATGACAGTTGGAATAACTTTCAGCAATTCTAAAGTCCACCTTATCCATTTACTTTTGTATTCATTGTCTTACAAGAAAGTAGTCTTCATTCTCTGCTTTATTGTGTCCGATGCAAAAACTGTGTTTGCTAAATGTTTGTACAAATGGAAACCAGGAAAACTATCATTCTCATTGAACTTGCCACGTGAGCTTTATTCCTAGTATAACACCTAAATCTTGATAAATTAGGTGTTGGAATCTATTTTCTTCTCAAATTTCAACACGCCTAAACTTAATTATTTATTTCTCAGATTTCTAGATCAAATTTAGGAAGTGATTCATCAGTTGAATGATTATTGAACATATTTTAGATTTTTAAAAGATGTTAATTCATTTTAAGCTATTTGGTTATGAGATATAACTGTTGCAATTAATGCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAGGTATAAGCCTGTTGCAATTTCTTTGTATGTATCAATTGCTGCTTGATTGGCCCAGTAAATGCTACCGGAGTCCCAAAGAATTGTATTTATTCTAGTGTTCTTGTATAAATTTAATAAAAAATTTATCTTAGTTTTCCTATCGGGTGCTATACATATTCATTTTGTGTATAATTTTCACTAGGCCCAAAATTTTTTTTAAAGAATTTTCCATAATCACATTAAAATAAGTATTTCAACCTTCATCGCATGTGAATATTATGAGACTTCACAAAAAATTGCTTTTCTGCCATTGTGAACATAACCTCAATCTAGGGCTAAAGGTTAGCGAGGTTACACTTAGGTATTTTTGATATGCTCTGATTGCAATTTGGTGGTTGAATAAAGTATCATTCTTGTCATGAAATTATTGTCTCCTCCAGTAAGATCACGCACAGATTGCATCTGAAGCTCACGAAGTGACAATAGGTTTTCCATGTTTCTTCATGAAGTATTGTTGAATTTTCAAGGTGTGATGTGATTTGATGTGTAAGATAACCTAGTCCTTTCAACACCCCATCTTCTGATCCATCCCTTCCTGGGCTACGAAAATTTGTAGTTAAATATAACACACACACCACCCTCCATTTTATATGATGTACTTTGACTTGGCACAGTTTAAGAAAGAAAGAAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAATTTGTGTGGCTGTGAATCATTTCTTTAAGGGTAAAATAGACATTTTATTGTTAAATTGTTACTTAATTAGAAATATGTCATTCTTTTTGGAACTGATTAAAAAGGAAAGCAAGTCACATAATTTGGAATAGAGGGAGTAGTTATTTATACTATTGTAGAATCATTTCGTTAAGTGGAAAAAGGGTACTAACTTGATTTATGTGTTAGTTTTAGATGTATTTTTCTATGTTGTGGAGCTAAAAAGCTTTTGGTGCTTTGTTTGGGATGTAGTTTTGTATGTGCTTATGTTGATTGGAGGTATAATGCTAATGCTTTGATCATGGAGCAAAGTGAGTTTTTCAGTGTATGGAATACAATTGATAAAGATGTTTATTGCAGTATGCTTCATGTGGTTTCTTTTCCTGTCAATTCCTTATATGAGCGCAATAAATACTACATATTCGTGCTTGCGTGCCTTTGGTGTTTCTTACTGAAAGTTATTATGGCTCAACATGACAAAAATATGCATGCACAATTTCTTAGTTCCTCTTTTTCCTTTTAGTTGAATTCAGTTCAATGTCCTGCTGCTCTATTCTTCAGGTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAGGTAACTCGGCTTTGTTTCTTGAAGCAATAGTTTGTCTTCATTTGCTGCTCTAATTGCCTGATCTGTCAAGGCACAAGAACATGGTGTTAATCTAGACGTACGGTTCTCCGCTGTCCCCTTGTGATATATTACTGGAAAAGGAAATTTTAAATTTTAAAGAAATCTATGGTGTCTTATTAGCTTCTTTAACACAACAACAACAACATGAAATTTCACAAGTGGTGGTCTGGGTAGTGTGTTGTGTATGCAATGTCACTCACCTTTTTAAGGTAGAAAGTCTATGTTTGGTAGACCCTTGACTCAAGTAAAACATATAAAAATAGGTAAGAGATAATACAGTAAAGAAGAAGCTGTGTTAAATAATGGGGAAAAGAACAGTAGTAATAACAACAGATAATGCAACAATCGAAGTAAAGGAAACAACAAGTAATAATAAATTGAAGAAACCCTTCGAGGTGACCCAGAGGTTTGGGCTTGAGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAATGAAAGCAAGGGGTTTGCCTTCTGGGTCAAGCTCGTCGCACTACGGCTTGTCAAGTGCGGGTTACCTCTCTCGTGTGGTTTGCGAGCTATTGCATACGAGCAGGTGTTTTGCCCTGTGCACCCAAGGGGTAGCGACGGCGAGTTTCCCTTGTCATAAAAGTTAAATAATAAAATTGAAGATAAGAAAGTAGGAGGAAAATGCTGATAATACTTATAAGGGAACTAAACTACGCATGATTAATTACTAAACTTCTACCTTAATTTCGACCTTCATATCTTTCTATCTAGACTCATGCCCTCGGTAAGCTGAGGGTAGTGTTCAGCAAAGCAAGTGCTTCATTGCTTTAAGTGGTGAACCGAAACGAAGTGAAGCGAGGCATGTGAAAAGAAGCATCCGCTTTTGGGCTTGAAGCATGGTGCTACCAGAAGCGGCAACTCGAGAAAAACAGCGGTTTTATTTTTTTTGACTTAATTATTGACCGATTTTAAAGGATAAAAAGAGGCGTGACTGGCCTTGTCCTTAAGAAAGTAGAACAGTAAGGTATCAGTGTACTCTTTCCTTCCAGTACCTTTTCTCTTTTCTTTTTTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTGGTACAGTGGCATTGCTAGCCTAGGTTTTTTCTTCTCTCTGTTTTTCTTTTCCCTGTTTAGCTTTGATTATTTGAATTATATGTTGCTAATTTTTTCTTCACATTGATTAAATCATCTGTTGCTGAATTGTTTTGTTTCATAACAATGTCTAAAATGTTGTTGAATTGTTTCTTAATACTTAATAGTGATAAAAATATATTGTTGATTATATTCTTAAGTCTTATCTGCCGTTAGAAATGGCTGACCCAACATGAAAATATGGGAAAAGAAGTTAGTAAGACCAATAAGACAAATTGTATGTCAGTCTGTCTATTTGGTGACAAGACAACTAATGGGGAACCTTTTCCTAGTTTTTAATATGAATATTTGCTTATATATTTTGTCTTTATGTATTTTGGTCTTTTTTCTTTTAAATTGTGCTTCACTTCAATGAAGCGAGACCTTACCGCTTTTTACTGCTTCCGCTCCCCTACACACTAGCTGAGGGTGTATCATATCCCCCCGCCCCCTGAATCAGTTGTATGAAAATTGAATAGTGACAAGTACATTGCTCTGGGACTGTGATGAAGTTTAAAAGAGGGAAGAAACGAAGGAAGTTTAAAATAGAATACACAGCCTTAATCTTCCTTTTCCTCCTGTTCCACCACAGTTAATTAGATGATACTATAACCATTGCACAAAACGTGTTGCTATTTTGTCCCACGATTGTAGATGGAAGAATGATATGTTTGCATAGAGGTTTGACAGTTCCTATCCAAGGACTGACAGTAGACAAGTATCTCAATAAGAAAATGTTTGAGATGGTACATTGCACTTATACACATAAGCATACAAGGGGAAACTGGCATTCAGTTGTATCTTTTATGTCCATTTTTTTGCAGCTAAAGTATTTTAGGTCTCATATTCATGCTGTATTTTTCTTAGCACATCTTGTCCCTTTGATTTGGTTGTTTTATTATGATACCGTAACTCAGTAGTTTTATTGAACTGAAATATTTCTATGCACATCTCTTCCCTCTCCTCTCTCTCCCTCTCTCTTGTATAATTAGCTTCCATTGTTAATTGACTTGTATTGATGGTGAGTGCACTGCTGTTTGATCTCCTTTTCAGGAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAGGTCAGGTTTCTTTTAGTAAATTTGGTGAACCTTTCTTGTTTTTTCAACACTAACCAATTTTCCTCAACTTAAAAAGTCTTAGTAAGACGACAATGCTCATGGAGTTAGATGTCTTGATTGCATAATTTAGTTCGGCTTCTTACCTAGATGTTCTAGCTTTTATCTAATTTCTGACTTGCATTACTTATCGTAAGAAAAGTACAGAACAAGAAAAAGATAAGCTGCAGAATTGCCTTCCTTTAGTAAGGTACTTGCTACTCCTTACAAATAGGAGGAAG-GCCAATGATGCAGGACTCGAG</genome_strand>
        <mrna_strand>TGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGC-AAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGTGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAG...............................................................................................................................................................................................................................................................................GAGGCCGTGACCATTGTGCAGGACATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228207" ref_strand="+" ref_description="SGN-E228207 [cLED-2-G10]">
      <seq>caactgctgttcttttaggtgatagattgcttgtcgcaaatgtgggggactctagagtcgtggcttgcagagatggttcagctattcctttgtccattgatcacaagcctgacagatcagatgagcgtgaaaggatagaacaggccggtggtttcattatctgggcaggtacatggcgtgtaggtggggtccttgctgtttctcgtgcatttggagataaaatgctaaagccatatgttgtggcagacccagagattcaggaagaagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="33198" stop="26190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32898" g_stop="32818" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27959" g_stop="27873" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="168" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26585" g_stop="26494" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="260" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E228207" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32898" e_stop="32818"/>
          <exon e_start="27959" e_stop="27873"/>
          <exon e_start="26585" e_stop="26494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAGGTTTGTTGCTTGTTGACTATTTACTATATCCAAAGTTTTCACAAACATGACTTTGGCTATCTCAAGGTCCATTAGTTCTTTTGTGGATTATCTTTGTTATAGGTAAACAAACTTTTTATAAGGGAAGTACATCAGAAAAAATGGGTAAAGGCGTAAAGCTCACAGGGACAGAGGGAGTTTTTCATTAGGTTTAGTCTGAATAGTTTGCATAGGATAACATATTCTTTGGTCTGTACAAAACTGTGATTCTGGAACTACTTTTTGTAATTTCTAGAACTTTCCACATTTTCATATCAATGGAAGTTCATTAATATATCAAAAACGTGTAAAAAAGTACATATACCTGAACAAACAAATTAAAAATAACAAAGCACATTTCAAACCTTCAAGCAATTAAGAACCTCAAACAAATTCAGACACTTGAAACAACTTTGTTACTCGATGCTAGCTTATCACAATTTATGTTAAGCATTCTTACAATCATAGTAACCACTACACTTAATTTGTCTGGCTAGTTGCTTCCGCTATGCGTTATAAATGAACTGATCATTAGGATCACATATATCAGCTTTCTATATCCTCTATTGTTTATACCCTTTGGTCTGATTGTTTGTATAATGATTTATTCAATAATTTAGAAAGCTTGTTATGTTGTCTTTTGTTTTGATTTGGCCATAGCCAGGCAGAACATATTTCTGCTTGGAAGATGTTAACTATGAGACTTTTGCAACAAAGGAATATGACTTGTATAATTTAAAAAATTAACCGATGAAGCATGTTTTGTATTGACTGACCTTAATCATATTTGTCTCCAAGGTCATTTGTCGGTGTAAAATTTTGTTATAGTCTTTTATCTGTAGGTTCTCACAAGAGTTATTAATCTGTGAAAACTGAAAAGCTTGCCCTGTTTTTCATTCAGAATAAGATATGAAGGAATCTGTGGGGTGTTTTATAATTTTTGTATATGGGTTTATCTTATGAATATAGGTTCATTATTACTCATTTAAAAAGAAAAAGAAGACTAGAAAGATAGGATGTTTCTTATGTATACTATCTAGTAAAGTCTCAATGATTTACCGTTTGCAGCCTTTACCATTTAACATTTGGGCTTTCCATCCCCCTATTATCCTTTTAACAACAACAACATCCCCTGTGAAATCTCACAAGTGAGGTCTTAGGAGGGTAAAATGTATGCATACCTTACAACTACCTCGTGGAGGTAGAGAGTCTGTTCCCGACATATTTTTATTAAGACTTTCCATATTTATGGAGTGGAACAATGACAAATCATATGGTTTGATGTAAACACATGGTGAGGTTATGCTTTTTTTGATGAAGTCACAACGGGTTTGGGTAAGTTATCGGTATGATATTCCGTAAGAAGAGAGAACTTCTTAGAAAGCACCATTAAGAATATAGATTGGAAAAAGTCCAAATATACCCATGAATTATACTATTTGGAGCAAATTTATCCTCCCATAAAAATGGCCTATATCTACCCCTATCGTTACACAAATGACTCATATATATCCTGTTCGATAGATGGAGCTCAAATACCCGTCATTGAAATATTTTTCCTAGTGTATTCATTATAAGTAAAGCCATGTGTAAAAAATTAAATCTTGATCAGATAGTAGCTGTTAAATTAAAGAATAGAAGTCCATTAATCCTAGTTTGTTTTGGCCTATTTTGCTTATTGAGGATTAATTTGATCAATTTTGGTGTTAAGATTAAAACAAATTCATTCTTTTTAAGATATTAAGCACTTACATTAAAAGTAAAGAACTACAAGTTGCAACACCGCAATTCAGAAGAACACATTTTACATATTAGTCAAAGCTCACCTAAATTTCATCCTTGGAAAGTTAATAGGGAAATAATTTGGGACATTTAAGGGAAGTTCCGATCTTTCACCTCATGAATTGATAAGGAAATGTACTTTATAATTCATTTTTGTACCGACCAAAAAGGAAATGGGTTATTCCATTTGAAATGGAGGAGGTACTTGTGGTTGAATTAGATTTGCAAGTTAAGAAAAAATCATTATGCAATTTAGGAGTTTTTTTAAAGATGAAGTAGGAATATTATTAACAAAAGAGCATTAACTAGCCCGTATACAAAAAGTAGAAAATCTTTAAAGAAAATATAATTTTTTATGAATGACACCAAATCATCTAAACAAAAAGTAACCTCACGGGTGCACCAAAGATAGCTAAGGGAAACAAGGTAGTTCTCAAGGGTAGAATTTTTCTCTATTCCATCAAAAGCTCTGCTATTCCCCTCTCTCCGTATGGTTCACATCTGTGCTATAGGGGTAATTTCATATGCCTTGCGTCTAGGGGTGTGCATCAGTCAGCTTAGTTCGGTTTTACATATTATTGATTCGATTTACAGTTTTTAATATGCTAAACCCATAAGATATTTTTATCGATTTTGGTCCTTAACGGTTTGGTTCTCGGTTTAACCAATAAGAAAATGCTTATAAAGCAACTATATGATTTTCCAACAATTTGACGCGACAAAACAATAATTATAACTTTACAAATGATCGTAAAAAAATAATAACTAAGGTGAAAAGAACTATACTAGTGTAATACAAAGAGAAATAAGATTCTTACATTAGGTTTTGACGTTTTGAATAATGTGAAGTTGTGAACTCAAAGTCATTGTGAAGTGTGAATTGAAGGCTAAAAGACAAAGACAGTATCTAGTAAGGTATTGAGATTAATATTTAATGTTTTAGTAAATTACTACAGCCTTAATGGGTTACCGATTTATCCAATAACCCAATATTGAAAACCAAAATCGAACCGGTAACTCTATAATGTTTTTGTATTAAATCATTGAAAAACCATTAATCCAGTAACCCAATAGCAATAAATCAATAATACTTTTTCCATTCGATTTATGAGTCGATTCGGATTTTACACACCGCTACCTTCCTCTGCCTTTCTATGAGCCTAGCTGAACATTGTTTCGAGTAAAGTAGTAAATCAGTGCAGTCTTAATTGGTTATTGATTTATCCAATAACCCAACATTGAAAACCAAACCGAACAGACAACCCAATAATATTTTTTTAATATAAAACCATTAACTCAATAGCAATAGACCAATAATACTTTTTCGGTTCGATTTTTCGGTCAGTTTGGTTTTTCACACTCCTACCTGTACCTCCTCCTCCACCTTTCTATGACCCTACATAAACATTGTTTCTTTCATAGTTCTCGACATTACCCACTCAAAACAAAACCGTCTAATTAACTCCCCCCATAACAAAGATGCTACCCGATAATGTAAGAATAGGTGATCTATGTCTTCCCTTGATTCTTTGCAACTGAGGAATTGATTAAGAAAATATAGTGGTATTTCTATCGGTGTAGAAAACAAGTGATACTAAAAGATTACATTTATAATTCAACAACATACCTGGTGAGATTCCACAAGTCGGGTCTGGGAGGATGGTGGGTGTATACATACCTTATTCCTACCTTTGTGGAGTAGAAGAAGTTGTTTCAATAGACCCTCAGACTCGGGAGAAAAGGAACCGTTTTTCCAAAACAGTTCTGAAGAAAAACAAATGCAAGAGTAAATAAGCTATGATAAAAGTATCTCTGAGAGTTTAAGTTATAATTCCTTTAATGATAATAGAATTAAGTAACCACCTCATTGTGTAAATCTTCCTAGCGAGAAACTTAAATGGAAAGATTTAAAAGTCAAACTAAATTATTGACCTAACATAGTGGATAAATAAAGAAAAATATTTCATCATTGATGGAAATTTAACAAAATAATAACTACTCCGTCCATCCCATTTTATGTGGCACCCTTTCCTTTTTAGTCCGTCCCAAAAAGAATGTCACATACTATAATTAGGAACAATTTAACTTTAAAATTCCCTTTTACCCTTGATAAAATGATTTAACAACCGCACAAATATCTAACTATTGTTTTAGACCATAAGTTTTAAAAATCTTCCTTTTTTTCTTAAATAACGTGTCAAATCAAATAGTATCACATAAAATGGGATGGAGGGAGTAAAATGTATATTCGTTTTTATATTTGAATATCATTTCTGAATAACCACCACATAATAAAGAAATATAAGGGACCTATCCATTTTCTTATCTCTTATAAGAGATTTAGCTACTTCAGTTTTTGAATTGAAACAGTAAAGGAAGTGAAATACCAATAGAAATCCATTGAATGAATAAAGTAAAAGTAAAACACTCCTAATCCAACTTGTATGGAGCACTTATTATGAAGAAGTAAAAACAACTTTTTTCTTTACCAAGTTCTTCTTTGAAAATATCTATAAATAATTTTTATTTTTTAAATTTGGTTTTGATTGTACATTCAAAATTGACCAGAAAGTAGGTATGACGTGATATATCTTGGGACTGTTGAAAACTTGGAATAACTCATGTTTTGAAACTGTTAATATGACAGTTGGAATAACTTTCAGCAATTCTAAAGTCCACCTTATCCATTTACTTTTGTATTCATTGTCTTACAAGAAAGTAGTCTTCATTCTCTGCTTTATTGTGTCCGATGCAAAAACTGTGTTTGCTAAATGTTTGTACAAATGGAAACCAGGAAAACTATCATTCTCATTGAACTTGCCACGTGAGCTTTATTCCTAGTATAACACCTAAATCTTGATAAATTAGGTGTTGGAATCTATTTTCTTCTCAAATTTCAACACGCCTAAACTTAATTATTTATTTCTCAGATTTCTAGATCAAATTTAGGAAGTGATTCATCAGTTGAATGATTATTGAACATATTTTAGATTTTTAAAAGATGTTAATTCATTTTAAGCTATTTGGTTATGAGATATAACTGTTGCAATTAATGCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAGGTATAAGCCTGTTGCAATTTCTTTGTATGTATCAATTGCTGCTTGATTGGCCCAGTAAATGCTACCGGAGTCCCAAAGAATTGTATTTATTCTAGTGTTCTTGTATAAATTTAATAAAAAATTTATCTTAGTTTTCCTATCGGGTGCTATACATATTCATTTTGTGTATAATTTTCACTAGGCCCAAAATTTTTTTTAAAGAATTTTCCATAATCACATTAAAATAAGTATTTCAACCTTCATCGCATGTGAATATTATGAGACTTCACAAAAAATTGCTTTTCTGCCATTGTGAACATAACCTCAATCTAGGGCTAAAGGTTAGCGAGGTTACACTTAGGTATTTTTGATATGCTCTGATTGCAATTTGGTGGTTGAATAAAGTATCATTCTTGTCATGAAATTATTGTCTCCTCCAGTAAGATCACGCACAGATTGCATCTGAAGCTCACGAAGTGACAATAGGTTTTCCATGTTTCTTCATGAAGTATTGTTGAATTTTCAAGGTGTGATGTGATTTGATGTGTAAGATAACCTAGTCCTTTCAACACCCCATCTTCTGATCCATCCCTTCCTGGGCTACGAAAATTTGTAGTTAAATATAACACACACACCACCCTCCATTTTATATGATGTACTTTGACTTGGCACAGTTTAAGAAAGAAAGAAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAATTTGTGTGGCTGTGAATCATTTCTTTAAGGGTAAAATAGACATTTTATTGTTAAATTGTTACTTAATTAGAAATATGTCATTCTTTTTGGAACTGATTAAAAAGGAAAGCAAGTCACATAATTTGGAATAGAGGGAGTAGTTATTTATACTATTGTAGAATCATTTCGTTAAGTGGAAAAAGGGTACTAACTTGATTTATGTGTTAGTTTTAGATGTATTTTTCTATGTTGTGGAGCTAAAAAGCTTTTGGTGCTTTGTTTGGGATGTAGTTTTGTATGTGCTTATGTTGATTGGAGGTATAATGCTAATGCTTTGATCATGGAGCAAAGTGAGTTTTTCAGTGTATGGAATACAATTGATAAAGATGTTTATTGCAGTATGCTTCATGTGGTTTCTTTTCCTGTCAATTCCTTATATGAGCGCAATAAATACTACATATTCGTGCTTGCGTGCCTTTGGTGTTTCTTACTGAAAGTTATTATGGCTCAACATGACAAAAATATGCATGCACAATTTCTTAGTTCCTCTTTTTCCTTTTAGTTGAATTCAGTTCAATGTCCTGCTGCTCTATTCTTCAGGTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG</genome_strand>
        <mrna_strand>CAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGTGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268978" ref_strand="+" ref_description="SGN-E268978 [cLEI-16-A6]">
      <seq>gctggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaaagatgccggttcaacagcgtcaactgctgttcttttaagtgatagattgcttgtcgcaaatgtgggggactctagagtcgtggcttgcagagatggttcagctattcctttgtccattgatcacaagcctgacagatcagatgagcgtgaaaggatagaacaggccggtggtttcattatctgggcaggtacatggcgtgtaggtggggtccttgctgtttctcgtgcatttggagataaaatgctaaagccatatgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="34955" stop="26213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34656" g_stop="34521" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="235" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32976" g_stop="32818" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="394" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27959" g_stop="27873" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="481" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26585" g_stop="26513" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="554" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E268978" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34656" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32818"/>
          <exon e_start="27959" e_stop="27873"/>
          <exon e_start="26585" e_stop="26513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAGGTTTGTTGCTTGTTGACTATTTACTATATCCAAAGTTTTCACAAACATGACTTTGGCTATCTCAAGGTCCATTAGTTCTTTTGTGGATTATCTTTGTTATAGGTAAACAAACTTTTTATAAGGGAAGTACATCAGAAAAAATGGGTAAAGGCGTAAAGCTCACAGGGACAGAGGGAGTTTTTCATTAGGTTTAGTCTGAATAGTTTGCATAGGATAACATATTCTTTGGTCTGTACAAAACTGTGATTCTGGAACTACTTTTTGTAATTTCTAGAACTTTCCACATTTTCATATCAATGGAAGTTCATTAATATATCAAAAACGTGTAAAAAAGTACATATACCTGAACAAACAAATTAAAAATAACAAAGCACATTTCAAACCTTCAAGCAATTAAGAACCTCAAACAAATTCAGACACTTGAAACAACTTTGTTACTCGATGCTAGCTTATCACAATTTATGTTAAGCATTCTTACAATCATAGTAACCACTACACTTAATTTGTCTGGCTAGTTGCTTCCGCTATGCGTTATAAATGAACTGATCATTAGGATCACATATATCAGCTTTCTATATCCTCTATTGTTTATACCCTTTGGTCTGATTGTTTGTATAATGATTTATTCAATAATTTAGAAAGCTTGTTATGTTGTCTTTTGTTTTGATTTGGCCATAGCCAGGCAGAACATATTTCTGCTTGGAAGATGTTAACTATGAGACTTTTGCAACAAAGGAATATGACTTGTATAATTTAAAAAATTAACCGATGAAGCATGTTTTGTATTGACTGACCTTAATCATATTTGTCTCCAAGGTCATTTGTCGGTGTAAAATTTTGTTATAGTCTTTTATCTGTAGGTTCTCACAAGAGTTATTAATCTGTGAAAACTGAAAAGCTTGCCCTGTTTTTCATTCAGAATAAGATATGAAGGAATCTGTGGGGTGTTTTATAATTTTTGTATATGGGTTTATCTTATGAATATAGGTTCATTATTACTCATTTAAAAAGAAAAAGAAGACTAGAAAGATAGGATGTTTCTTATGTATACTATCTAGTAAAGTCTCAATGATTTACCGTTTGCAGCCTTTACCATTTAACATTTGGGCTTTCCATCCCCCTATTATCCTTTTAACAACAACAACATCCCCTGTGAAATCTCACAAGTGAGGTCTTAGGAGGGTAAAATGTATGCATACCTTACAACTACCTCGTGGAGGTAGAGAGTCTGTTCCCGACATATTTTTATTAAGACTTTCCATATTTATGGAGTGGAACAATGACAAATCATATGGTTTGATGTAAACACATGGTGAGGTTATGCTTTTTTTGATGAAGTCACAACGGGTTTGGGTAAGTTATCGGTATGATATTCCGTAAGAAGAGAGAACTTCTTAGAAAGCACCATTAAGAATATAGATTGGAAAAAGTCCAAATATACCCATGAATTATACTATTTGGAGCAAATTTATCCTCCCATAAAAATGGCCTATATCTACCCCTATCGTTACACAAATGACTCATATATATCCTGTTCGATAGATGGAGCTCAAATACCCGTCATTGAAATATTTTTCCTAGTGTATTCATTATAAGTAAAGCCATGTGTAAAAAATTAAATCTTGATCAGATAGTAGCTGTTAAATTAAAGAATAGAAGTCCATTAATCCTAGTTTGTTTTGGCCTATTTTGCTTATTGAGGATTAATTTGATCAATTTTGGTGTTAAGATTAAAACAAATTCATTCTTTTTAAGATATTAAGCACTTACATTAAAAGTAAAGAACTACAAGTTGCAACACCGCAATTCAGAAGAACACATTTTACATATTAGTCAAAGCTCACCTAAATTTCATCCTTGGAAAGTTAATAGGGAAATAATTTGGGACATTTAAGGGAAGTTCCGATCTTTCACCTCATGAATTGATAAGGAAATGTACTTTATAATTCATTTTTGTACCGACCAAAAAGGAAATGGGTTATTCCATTTGAAATGGAGGAGGTACTTGTGGTTGAATTAGATTTGCAAGTTAAGAAAAAATCATTATGCAATTTAGGAGTTTTTTTAAAGATGAAGTAGGAATATTATTAACAAAAGAGCATTAACTAGCCCGTATACAAAAAGTAGAAAATCTTTAAAGAAAATATAATTTTTTATGAATGACACCAAATCATCTAAACAAAAAGTAACCTCACGGGTGCACCAAAGATAGCTAAGGGAAACAAGGTAGTTCTCAAGGGTAGAATTTTTCTCTATTCCATCAAAAGCTCTGCTATTCCCCTCTCTCCGTATGGTTCACATCTGTGCTATAGGGGTAATTTCATATGCCTTGCGTCTAGGGGTGTGCATCAGTCAGCTTAGTTCGGTTTTACATATTATTGATTCGATTTACAGTTTTTAATATGCTAAACCCATAAGATATTTTTATCGATTTTGGTCCTTAACGGTTTGGTTCTCGGTTTAACCAATAAGAAAATGCTTATAAAGCAACTATATGATTTTCCAACAATTTGACGCGACAAAACAATAATTATAACTTTACAAATGATCGTAAAAAAATAATAACTAAGGTGAAAAGAACTATACTAGTGTAATACAAAGAGAAATAAGATTCTTACATTAGGTTTTGACGTTTTGAATAATGTGAAGTTGTGAACTCAAAGTCATTGTGAAGTGTGAATTGAAGGCTAAAAGACAAAGACAGTATCTAGTAAGGTATTGAGATTAATATTTAATGTTTTAGTAAATTACTACAGCCTTAATGGGTTACCGATTTATCCAATAACCCAATATTGAAAACCAAAATCGAACCGGTAACTCTATAATGTTTTTGTATTAAATCATTGAAAAACCATTAATCCAGTAACCCAATAGCAATAAATCAATAATACTTTTTCCATTCGATTTATGAGTCGATTCGGATTTTACACACCGCTACCTTCCTCTGCCTTTCTATGAGCCTAGCTGAACATTGTTTCGAGTAAAGTAGTAAATCAGTGCAGTCTTAATTGGTTATTGATTTATCCAATAACCCAACATTGAAAACCAAACCGAACAGACAACCCAATAATATTTTTTTAATATAAAACCATTAACTCAATAGCAATAGACCAATAATACTTTTTCGGTTCGATTTTTCGGTCAGTTTGGTTTTTCACACTCCTACCTGTACCTCCTCCTCCACCTTTCTATGACCCTACATAAACATTGTTTCTTTCATAGTTCTCGACATTACCCACTCAAAACAAAACCGTCTAATTAACTCCCCCCATAACAAAGATGCTACCCGATAATGTAAGAATAGGTGATCTATGTCTTCCCTTGATTCTTTGCAACTGAGGAATTGATTAAGAAAATATAGTGGTATTTCTATCGGTGTAGAAAACAAGTGATACTAAAAGATTACATTTATAATTCAACAACATACCTGGTGAGATTCCACAAGTCGGGTCTGGGAGGATGGTGGGTGTATACATACCTTATTCCTACCTTTGTGGAGTAGAAGAAGTTGTTTCAATAGACCCTCAGACTCGGGAGAAAAGGAACCGTTTTTCCAAAACAGTTCTGAAGAAAAACAAATGCAAGAGTAAATAAGCTATGATAAAAGTATCTCTGAGAGTTTAAGTTATAATTCCTTTAATGATAATAGAATTAAGTAACCACCTCATTGTGTAAATCTTCCTAGCGAGAAACTTAAATGGAAAGATTTAAAAGTCAAACTAAATTATTGACCTAACATAGTGGATAAATAAAGAAAAATATTTCATCATTGATGGAAATTTAACAAAATAATAACTACTCCGTCCATCCCATTTTATGTGGCACCCTTTCCTTTTTAGTCCGTCCCAAAAAGAATGTCACATACTATAATTAGGAACAATTTAACTTTAAAATTCCCTTTTACCCTTGATAAAATGATTTAACAACCGCACAAATATCTAACTATTGTTTTAGACCATAAGTTTTAAAAATCTTCCTTTTTTTCTTAAATAACGTGTCAAATCAAATAGTATCACATAAAATGGGATGGAGGGAGTAAAATGTATATTCGTTTTTATATTTGAATATCATTTCTGAATAACCACCACATAATAAAGAAATATAAGGGACCTATCCATTTTCTTATCTCTTATAAGAGATTTAGCTACTTCAGTTTTTGAATTGAAACAGTAAAGGAAGTGAAATACCAATAGAAATCCATTGAATGAATAAAGTAAAAGTAAAACACTCCTAATCCAACTTGTATGGAGCACTTATTATGAAGAAGTAAAAACAACTTTTTTCTTTACCAAGTTCTTCTTTGAAAATATCTATAAATAATTTTTATTTTTTAAATTTGGTTTTGATTGTACATTCAAAATTGACCAGAAAGTAGGTATGACGTGATATATCTTGGGACTGTTGAAAACTTGGAATAACTCATGTTTTGAAACTGTTAATATGACAGTTGGAATAACTTTCAGCAATTCTAAAGTCCACCTTATCCATTTACTTTTGTATTCATTGTCTTACAAGAAAGTAGTCTTCATTCTCTGCTTTATTGTGTCCGATGCAAAAACTGTGTTTGCTAAATGTTTGTACAAATGGAAACCAGGAAAACTATCATTCTCATTGAACTTGCCACGTGAGCTTTATTCCTAGTATAACACCTAAATCTTGATAAATTAGGTGTTGGAATCTATTTTCTTCTCAAATTTCAACACGCCTAAACTTAATTATTTATTTCTCAGATTTCTAGATCAAATTTAGGAAGTGATTCATCAGTTGAATGATTATTGAACATATTTTAGATTTTTAAAAGATGTTAATTCATTTTAAGCTATTTGGTTATGAGATATAACTGTTGCAATTAATGCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAGGTATAAGCCTGTTGCAATTTCTTTGTATGTATCAATTGCTGCTTGATTGGCCCAGTAAATGCTACCGGAGTCCCAAAGAATTGTATTTATTCTAGTGTTCTTGTATAAATTTAATAAAAAATTTATCTTAGTTTTCCTATCGGGTGCTATACATATTCATTTTGTGTATAATTTTCACTAGGCCCAAAATTTTTTTTAAAGAATTTTCCATAATCACATTAAAATAAGTATTTCAACCTTCATCGCATGTGAATATTATGAGACTTCACAAAAAATTGCTTTTCTGCCATTGTGAACATAACCTCAATCTAGGGCTAAAGGTTAGCGAGGTTACACTTAGGTATTTTTGATATGCTCTGATTGCAATTTGGTGGTTGAATAAAGTATCATTCTTGTCATGAAATTATTGTCTCCTCCAGTAAGATCACGCACAGATTGCATCTGAAGCTCACGAAGTGACAATAGGTTTTCCATGTTTCTTCATGAAGTATTGTTGAATTTTCAAGGTGTGATGTGATTTGATGTGTAAGATAACCTAGTCCTTTCAACACCCCATCTTCTGATCCATCCCTTCCTGGGCTACGAAAATTTGTAGTTAAATATAACACACACACCACCCTCCATTTTATATGATGTACTTTGACTTGGCACAGTTTAAGAAAGAAAGAAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAATTTGTGTGGCTGTGAATCATTTCTTTAAGGGTAAAATAGACATTTTATTGTTAAATTGTTACTTAATTAGAAATATGTCATTCTTTTTGGAACTGATTAAAAAGGAAAGCAAGTCACATAATTTGGAATAGAGGGAGTAGTTATTTATACTATTGTAGAATCATTTCGTTAAGTGGAAAAAGGGTACTAACTTGATTTATGTGTTAGTTTTAGATGTATTTTTCTATGTTGTGGAGCTAAAAAGCTTTTGGTGCTTTGTTTGGGATGTAGTTTTGTATGTGCTTATGTTGATTGGAGGTATAATGCTAATGCTTTGATCATGGAGCAAAGTGAGTTTTTCAGTGTATGGAATACAATTGATAAAGATGTTTATTGCAGTATGCTTCATGTGGTTTCTTTTCCTGTCAATTCCTTATATGAGCGCAATAAATACTACATATTCGTGCTTGCGTGCCTTTGGTGTTTCTTACTGAAAGTTATTATGGCTCAACATGACAAAAATATGCATGCACAATTTCTTAGTTCCTCTTTTTCCTTTTAGTTGAATTCAGTTCAATGTCCTGCTGCTCTATTCTTCAGGTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGT</genome_strand>
        <mrna_strand>GCTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAAGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGTGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692767" ref_strand="+" ref_description="SGN-E692767 [LH_Ea09J05]">
      <seq>tcgcgatgaacgttgacaaggaacaatccgatcgcaaccttccagaactttctccaccgtccatggagaaacctgcaccggagccggagccggaaccgtcacagcaaccaccgagagagtctactgctccgacgccgtccatgacgcagattaaacagccgccgtccctgccgctggtgaaacatccgccgtctctgacgcaggtgaaacagacgccgtctattgatcccagtgcgctctttagcggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcggaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgatagattgcttgtcgcaaatgtgggggactctagagtcgtggcttgcagagatggttcagctattcctttgtccattgatcacaagcctgacagatcggatgagcgtgaaaggatagaacaggccggtggtttcattatctgggcaggtacatggcgtgtaggtggggtccttgctgtgtctcgtgcatttggagataaatgctaaagccatatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38700" stop="26214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38401" g_stop="38116" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38115" i_stop="34664" i_length="3452">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="402" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="501" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32976" g_stop="32818" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="660" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27959" g_stop="27873" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="747" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26585" g_stop="26514" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="818" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E692767" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.034" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38401" e_stop="38116"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32818"/>
          <exon e_start="27959" e_stop="27873"/>
          <exon e_start="26585" e_stop="26514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAGGTTTGTTGCTTGTTGACTATTTACTATATCCAAAGTTTTCACAAACATGACTTTGGCTATCTCAAGGTCCATTAGTTCTTTTGTGGATTATCTTTGTTATAGGTAAACAAACTTTTTATAAGGGAAGTACATCAGAAAAAATGGGTAAAGGCGTAAAGCTCACAGGGACAGAGGGAGTTTTTCATTAGGTTTAGTCTGAATAGTTTGCATAGGATAACATATTCTTTGGTCTGTACAAAACTGTGATTCTGGAACTACTTTTTGTAATTTCTAGAACTTTCCACATTTTCATATCAATGGAAGTTCATTAATATATCAAAAACGTGTAAAAAAGTACATATACCTGAACAAACAAATTAAAAATAACAAAGCACATTTCAAACCTTCAAGCAATTAAGAACCTCAAACAAATTCAGACACTTGAAACAACTTTGTTACTCGATGCTAGCTTATCACAATTTATGTTAAGCATTCTTACAATCATAGTAACCACTACACTTAATTTGTCTGGCTAGTTGCTTCCGCTATGCGTTATAAATGAACTGATCATTAGGATCACATATATCAGCTTTCTATATCCTCTATTGTTTATACCCTTTGGTCTGATTGTTTGTATAATGATTTATTCAATAATTTAGAAAGCTTGTTATGTTGTCTTTTGTTTTGATTTGGCCATAGCCAGGCAGAACATATTTCTGCTTGGAAGATGTTAACTATGAGACTTTTGCAACAAAGGAATATGACTTGTATAATTTAAAAAATTAACCGATGAAGCATGTTTTGTATTGACTGACCTTAATCATATTTGTCTCCAAGGTCATTTGTCGGTGTAAAATTTTGTTATAGTCTTTTATCTGTAGGTTCTCACAAGAGTTATTAATCTGTGAAAACTGAAAAGCTTGCCCTGTTTTTCATTCAGAATAAGATATGAAGGAATCTGTGGGGTGTTTTATAATTTTTGTATATGGGTTTATCTTATGAATATAGGTTCATTATTACTCATTTAAAAAGAAAAAGAAGACTAGAAAGATAGGATGTTTCTTATGTATACTATCTAGTAAAGTCTCAATGATTTACCGTTTGCAGCCTTTACCATTTAACATTTGGGCTTTCCATCCCCCTATTATCCTTTTAACAACAACAACATCCCCTGTGAAATCTCACAAGTGAGGTCTTAGGAGGGTAAAATGTATGCATACCTTACAACTACCTCGTGGAGGTAGAGAGTCTGTTCCCGACATATTTTTATTAAGACTTTCCATATTTATGGAGTGGAACAATGACAAATCATATGGTTTGATGTAAACACATGGTGAGGTTATGCTTTTTTTGATGAAGTCACAACGGGTTTGGGTAAGTTATCGGTATGATATTCCGTAAGAAGAGAGAACTTCTTAGAAAGCACCATTAAGAATATAGATTGGAAAAAGTCCAAATATACCCATGAATTATACTATTTGGAGCAAATTTATCCTCCCATAAAAATGGCCTATATCTACCCCTATCGTTACACAAATGACTCATATATATCCTGTTCGATAGATGGAGCTCAAATACCCGTCATTGAAATATTTTTCCTAGTGTATTCATTATAAGTAAAGCCATGTGTAAAAAATTAAATCTTGATCAGATAGTAGCTGTTAAATTAAAGAATAGAAGTCCATTAATCCTAGTTTGTTTTGGCCTATTTTGCTTATTGAGGATTAATTTGATCAATTTTGGTGTTAAGATTAAAACAAATTCATTCTTTTTAAGATATTAAGCACTTACATTAAAAGTAAAGAACTACAAGTTGCAACACCGCAATTCAGAAGAACACATTTTACATATTAGTCAAAGCTCACCTAAATTTCATCCTTGGAAAGTTAATAGGGAAATAATTTGGGACATTTAAGGGAAGTTCCGATCTTTCACCTCATGAATTGATAAGGAAATGTACTTTATAATTCATTTTTGTACCGACCAAAAAGGAAATGGGTTATTCCATTTGAAATGGAGGAGGTACTTGTGGTTGAATTAGATTTGCAAGTTAAGAAAAAATCATTATGCAATTTAGGAGTTTTTTTAAAGATGAAGTAGGAATATTATTAACAAAAGAGCATTAACTAGCCCGTATACAAAAAGTAGAAAATCTTTAAAGAAAATATAATTTTTTATGAATGACACCAAATCATCTAAACAAAAAGTAACCTCACGGGTGCACCAAAGATAGCTAAGGGAAACAAGGTAGTTCTCAAGGGTAGAATTTTTCTCTATTCCATCAAAAGCTCTGCTATTCCCCTCTCTCCGTATGGTTCACATCTGTGCTATAGGGGTAATTTCATATGCCTTGCGTCTAGGGGTGTGCATCAGTCAGCTTAGTTCGGTTTTACATATTATTGATTCGATTTACAGTTTTTAATATGCTAAACCCATAAGATATTTTTATCGATTTTGGTCCTTAACGGTTTGGTTCTCGGTTTAACCAATAAGAAAATGCTTATAAAGCAACTATATGATTTTCCAACAATTTGACGCGACAAAACAATAATTATAACTTTACAAATGATCGTAAAAAAATAATAACTAAGGTGAAAAGAACTATACTAGTGTAATACAAAGAGAAATAAGATTCTTACATTAGGTTTTGACGTTTTGAATAATGTGAAGTTGTGAACTCAAAGTCATTGTGAAGTGTGAATTGAAGGCTAAAAGACAAAGACAGTATCTAGTAAGGTATTGAGATTAATATTTAATGTTTTAGTAAATTACTACAGCCTTAATGGGTTACCGATTTATCCAATAACCCAATATTGAAAACCAAAATCGAACCGGTAACTCTATAATGTTTTTGTATTAAATCATTGAAAAACCATTAATCCAGTAACCCAATAGCAATAAATCAATAATACTTTTTCCATTCGATTTATGAGTCGATTCGGATTTTACACACCGCTACCTTCCTCTGCCTTTCTATGAGCCTAGCTGAACATTGTTTCGAGTAAAGTAGTAAATCAGTGCAGTCTTAATTGGTTATTGATTTATCCAATAACCCAACATTGAAAACCAAACCGAACAGACAACCCAATAATATTTTTTTAATATAAAACCATTAACTCAATAGCAATAGACCAATAATACTTTTTCGGTTCGATTTTTCGGTCAGTTTGGTTTTTCACACTCCTACCTGTACCTCCTCCTCCACCTTTCTATGACCCTACATAAACATTGTTTCTTTCATAGTTCTCGACATTACCCACTCAAAACAAAACCGTCTAATTAACTCCCCCCATAACAAAGATGCTACCCGATAATGTAAGAATAGGTGATCTATGTCTTCCCTTGATTCTTTGCAACTGAGGAATTGATTAAGAAAATATAGTGGTATTTCTATCGGTGTAGAAAACAAGTGATACTAAAAGATTACATTTATAATTCAACAACATACCTGGTGAGATTCCACAAGTCGGGTCTGGGAGGATGGTGGGTGTATACATACCTTATTCCTACCTTTGTGGAGTAGAAGAAGTTGTTTCAATAGACCCTCAGACTCGGGAGAAAAGGAACCGTTTTTCCAAAACAGTTCTGAAGAAAAACAAATGCAAGAGTAAATAAGCTATGATAAAAGTATCTCTGAGAGTTTAAGTTATAATTCCTTTAATGATAATAGAATTAAGTAACCACCTCATTGTGTAAATCTTCCTAGCGAGAAACTTAAATGGAAAGATTTAAAAGTCAAACTAAATTATTGACCTAACATAGTGGATAAATAAAGAAAAATATTTCATCATTGATGGAAATTTAACAAAATAATAACTACTCCGTCCATCCCATTTTATGTGGCACCCTTTCCTTTTTAGTCCGTCCCAAAAAGAATGTCACATACTATAATTAGGAACAATTTAACTTTAAAATTCCCTTTTACCCTTGATAAAATGATTTAACAACCGCACAAATATCTAACTATTGTTTTAGACCATAAGTTTTAAAAATCTTCCTTTTTTTCTTAAATAACGTGTCAAATCAAATAGTATCACATAAAATGGGATGGAGGGAGTAAAATGTATATTCGTTTTTATATTTGAATATCATTTCTGAATAACCACCACATAATAAAGAAATATAAGGGACCTATCCATTTTCTTATCTCTTATAAGAGATTTAGCTACTTCAGTTTTTGAATTGAAACAGTAAAGGAAGTGAAATACCAATAGAAATCCATTGAATGAATAAAGTAAAAGTAAAACACTCCTAATCCAACTTGTATGGAGCACTTATTATGAAGAAGTAAAAACAACTTTTTTCTTTACCAAGTTCTTCTTTGAAAATATCTATAAATAATTTTTATTTTTTAAATTTGGTTTTGATTGTACATTCAAAATTGACCAGAAAGTAGGTATGACGTGATATATCTTGGGACTGTTGAAAACTTGGAATAACTCATGTTTTGAAACTGTTAATATGACAGTTGGAATAACTTTCAGCAATTCTAAAGTCCACCTTATCCATTTACTTTTGTATTCATTGTCTTACAAGAAAGTAGTCTTCATTCTCTGCTTTATTGTGTCCGATGCAAAAACTGTGTTTGCTAAATGTTTGTACAAATGGAAACCAGGAAAACTATCATTCTCATTGAACTTGCCACGTGAGCTTTATTCCTAGTATAACACCTAAATCTTGATAAATTAGGTGTTGGAATCTATTTTCTTCTCAAATTTCAACACGCCTAAACTTAATTATTTATTTCTCAGATTTCTAGATCAAATTTAGGAAGTGATTCATCAGTTGAATGATTATTGAACATATTTTAGATTTTTAAAAGATGTTAATTCATTTTAAGCTATTTGGTTATGAGATATAACTGTTGCAATTAATGCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAGGTATAAGCCTGTTGCAATTTCTTTGTATGTATCAATTGCTGCTTGATTGGCCCAGTAAATGCTACCGGAGTCCCAAAGAATTGTATTTATTCTAGTGTTCTTGTATAAATTTAATAAAAAATTTATCTTAGTTTTCCTATCGGGTGCTATACATATTCATTTTGTGTATAATTTTCACTAGGCCCAAAATTTTTTTTAAAGAATTTTCCATAATCACATTAAAATAAGTATTTCAACCTTCATCGCATGTGAATATTATGAGACTTCACAAAAAATTGCTTTTCTGCCATTGTGAACATAACCTCAATCTAGGGCTAAAGGTTAGCGAGGTTACACTTAGGTATTTTTGATATGCTCTGATTGCAATTTGGTGGTTGAATAAAGTATCATTCTTGTCATGAAATTATTGTCTCCTCCAGTAAGATCACGCACAGATTGCATCTGAAGCTCACGAAGTGACAATAGGTTTTCCATGTTTCTTCATGAAGTATTGTTGAATTTTCAAGGTGTGATGTGATTTGATGTGTAAGATAACCTAGTCCTTTCAACACCCCATCTTCTGATCCATCCCTTCCTGGGCTACGAAAATTTGTAGTTAAATATAACACACACACCACCCTCCATTTTATATGATGTACTTTGACTTGGCACAGTTTAAGAAAGAAAGAAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAATTTGTGTGGCTGTGAATCATTTCTTTAAGGGTAAAATAGACATTTTATTGTTAAATTGTTACTTAATTAGAAATATGTCATTCTTTTTGGAACTGATTAAAAAGGAAAGCAAGTCACATAATTTGGAATAGAGGGAGTAGTTATTTATACTATTGTAGAATCATTTCGTTAAGTGGAAAAAGGGTACTAACTTGATTTATGTGTTAGTTTTAGATGTATTTTTCTATGTTGTGGAGCTAAAAAGCTTTTGGTGCTTTGTTTGGGATGTAGTTTTGTATGTGCTTATGTTGATTGGAGGTATAATGCTAATGCTTTGATCATGGAGCAAAGTGAGTTTTTCAGTGTATGGAATACAATTGATAAAGATGTTTATTGCAGTATGCTTCATGTGGTTTCTTTTCCTGTCAATTCCTTATATGAGCGCAATAAATACTACATATTCGTGCTTGCGTGCCTTTGGTGTTTCTTACTGAAAGTTATTATGGCTCAACATGACAAAAATATGCATGCACAATTTCTTAGTTCCTCTTTTTCCTTTTAGTTGAATTCAGTTCAATGTCCTGCTGCTCTATTCTTCAGGTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTG</genome_strand>
        <mrna_strand>TCGCGATGAACGTTGACAAGGAACAATCCGATCGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGAGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCG--TC---C-C---T---------GCCG---CT------GGTGAAACATCCGCCGTCTCTGACGCAGGTGAAACAGACGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCGGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCGGATGAGCGTGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGCGTGTAGGTGGGGTCCTTGCTGTGTCTCGTGCATTTGGAGAT-AAATGCTAAAGCCATATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232020" ref_strand="+" ref_description="SGN-E232020 [cLED-7-I22]">
      <seq>tggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgatagattgcttgtcgcaaatgtgggggactctagagtcgtggcttgcagagatggttcagctattcctttgtccattgatcacaagcctgacagatcagatgagcgtgaaaggatagaacaggccggtggtttcattatctgggcaggtacatggcgtgtaggtggggtccttgctgtttctcgtgcatttggagataaaatgctaaagccatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="34954" stop="26217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34654" g_stop="34521" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="233" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32976" g_stop="32818" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="391" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27959" g_stop="27873" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="478" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26585" g_stop="26517" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="547" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E232020" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34654" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32818"/>
          <exon e_start="27959" e_stop="27873"/>
          <exon e_start="26585" e_stop="26517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAGGTTTGTTGCTTGTTGACTATTTACTATATCCAAAGTTTTCACAAACATGACTTTGGCTATCTCAAGGTCCATTAGTTCTTTTGTGGATTATCTTTGTTATAGGTAAACAAACTTTTTATAAGGGAAGTACATCAGAAAAAATGGGTAAAGGCGTAAAGCTCACAGGGACAGAGGGAGTTTTTCATTAGGTTTAGTCTGAATAGTTTGCATAGGATAACATATTCTTTGGTCTGTACAAAACTGTGATTCTGGAACTACTTTTTGTAATTTCTAGAACTTTCCACATTTTCATATCAATGGAAGTTCATTAATATATCAAAAACGTGTAAAAAAGTACATATACCTGAACAAACAAATTAAAAATAACAAAGCACATTTCAAACCTTCAAGCAATTAAGAACCTCAAACAAATTCAGACACTTGAAACAACTTTGTTACTCGATGCTAGCTTATCACAATTTATGTTAAGCATTCTTACAATCATAGTAACCACTACACTTAATTTGTCTGGCTAGTTGCTTCCGCTATGCGTTATAAATGAACTGATCATTAGGATCACATATATCAGCTTTCTATATCCTCTATTGTTTATACCCTTTGGTCTGATTGTTTGTATAATGATTTATTCAATAATTTAGAAAGCTTGTTATGTTGTCTTTTGTTTTGATTTGGCCATAGCCAGGCAGAACATATTTCTGCTTGGAAGATGTTAACTATGAGACTTTTGCAACAAAGGAATATGACTTGTATAATTTAAAAAATTAACCGATGAAGCATGTTTTGTATTGACTGACCTTAATCATATTTGTCTCCAAGGTCATTTGTCGGTGTAAAATTTTGTTATAGTCTTTTATCTGTAGGTTCTCACAAGAGTTATTAATCTGTGAAAACTGAAAAGCTTGCCCTGTTTTTCATTCAGAATAAGATATGAAGGAATCTGTGGGGTGTTTTATAATTTTTGTATATGGGTTTATCTTATGAATATAGGTTCATTATTACTCATTTAAAAAGAAAAAGAAGACTAGAAAGATAGGATGTTTCTTATGTATACTATCTAGTAAAGTCTCAATGATTTACCGTTTGCAGCCTTTACCATTTAACATTTGGGCTTTCCATCCCCCTATTATCCTTTTAACAACAACAACATCCCCTGTGAAATCTCACAAGTGAGGTCTTAGGAGGGTAAAATGTATGCATACCTTACAACTACCTCGTGGAGGTAGAGAGTCTGTTCCCGACATATTTTTATTAAGACTTTCCATATTTATGGAGTGGAACAATGACAAATCATATGGTTTGATGTAAACACATGGTGAGGTTATGCTTTTTTTGATGAAGTCACAACGGGTTTGGGTAAGTTATCGGTATGATATTCCGTAAGAAGAGAGAACTTCTTAGAAAGCACCATTAAGAATATAGATTGGAAAAAGTCCAAATATACCCATGAATTATACTATTTGGAGCAAATTTATCCTCCCATAAAAATGGCCTATATCTACCCCTATCGTTACACAAATGACTCATATATATCCTGTTCGATAGATGGAGCTCAAATACCCGTCATTGAAATATTTTTCCTAGTGTATTCATTATAAGTAAAGCCATGTGTAAAAAATTAAATCTTGATCAGATAGTAGCTGTTAAATTAAAGAATAGAAGTCCATTAATCCTAGTTTGTTTTGGCCTATTTTGCTTATTGAGGATTAATTTGATCAATTTTGGTGTTAAGATTAAAACAAATTCATTCTTTTTAAGATATTAAGCACTTACATTAAAAGTAAAGAACTACAAGTTGCAACACCGCAATTCAGAAGAACACATTTTACATATTAGTCAAAGCTCACCTAAATTTCATCCTTGGAAAGTTAATAGGGAAATAATTTGGGACATTTAAGGGAAGTTCCGATCTTTCACCTCATGAATTGATAAGGAAATGTACTTTATAATTCATTTTTGTACCGACCAAAAAGGAAATGGGTTATTCCATTTGAAATGGAGGAGGTACTTGTGGTTGAATTAGATTTGCAAGTTAAGAAAAAATCATTATGCAATTTAGGAGTTTTTTTAAAGATGAAGTAGGAATATTATTAACAAAAGAGCATTAACTAGCCCGTATACAAAAAGTAGAAAATCTTTAAAGAAAATATAATTTTTTATGAATGACACCAAATCATCTAAACAAAAAGTAACCTCACGGGTGCACCAAAGATAGCTAAGGGAAACAAGGTAGTTCTCAAGGGTAGAATTTTTCTCTATTCCATCAAAAGCTCTGCTATTCCCCTCTCTCCGTATGGTTCACATCTGTGCTATAGGGGTAATTTCATATGCCTTGCGTCTAGGGGTGTGCATCAGTCAGCTTAGTTCGGTTTTACATATTATTGATTCGATTTACAGTTTTTAATATGCTAAACCCATAAGATATTTTTATCGATTTTGGTCCTTAACGGTTTGGTTCTCGGTTTAACCAATAAGAAAATGCTTATAAAGCAACTATATGATTTTCCAACAATTTGACGCGACAAAACAATAATTATAACTTTACAAATGATCGTAAAAAAATAATAACTAAGGTGAAAAGAACTATACTAGTGTAATACAAAGAGAAATAAGATTCTTACATTAGGTTTTGACGTTTTGAATAATGTGAAGTTGTGAACTCAAAGTCATTGTGAAGTGTGAATTGAAGGCTAAAAGACAAAGACAGTATCTAGTAAGGTATTGAGATTAATATTTAATGTTTTAGTAAATTACTACAGCCTTAATGGGTTACCGATTTATCCAATAACCCAATATTGAAAACCAAAATCGAACCGGTAACTCTATAATGTTTTTGTATTAAATCATTGAAAAACCATTAATCCAGTAACCCAATAGCAATAAATCAATAATACTTTTTCCATTCGATTTATGAGTCGATTCGGATTTTACACACCGCTACCTTCCTCTGCCTTTCTATGAGCCTAGCTGAACATTGTTTCGAGTAAAGTAGTAAATCAGTGCAGTCTTAATTGGTTATTGATTTATCCAATAACCCAACATTGAAAACCAAACCGAACAGACAACCCAATAATATTTTTTTAATATAAAACCATTAACTCAATAGCAATAGACCAATAATACTTTTTCGGTTCGATTTTTCGGTCAGTTTGGTTTTTCACACTCCTACCTGTACCTCCTCCTCCACCTTTCTATGACCCTACATAAACATTGTTTCTTTCATAGTTCTCGACATTACCCACTCAAAACAAAACCGTCTAATTAACTCCCCCCATAACAAAGATGCTACCCGATAATGTAAGAATAGGTGATCTATGTCTTCCCTTGATTCTTTGCAACTGAGGAATTGATTAAGAAAATATAGTGGTATTTCTATCGGTGTAGAAAACAAGTGATACTAAAAGATTACATTTATAATTCAACAACATACCTGGTGAGATTCCACAAGTCGGGTCTGGGAGGATGGTGGGTGTATACATACCTTATTCCTACCTTTGTGGAGTAGAAGAAGTTGTTTCAATAGACCCTCAGACTCGGGAGAAAAGGAACCGTTTTTCCAAAACAGTTCTGAAGAAAAACAAATGCAAGAGTAAATAAGCTATGATAAAAGTATCTCTGAGAGTTTAAGTTATAATTCCTTTAATGATAATAGAATTAAGTAACCACCTCATTGTGTAAATCTTCCTAGCGAGAAACTTAAATGGAAAGATTTAAAAGTCAAACTAAATTATTGACCTAACATAGTGGATAAATAAAGAAAAATATTTCATCATTGATGGAAATTTAACAAAATAATAACTACTCCGTCCATCCCATTTTATGTGGCACCCTTTCCTTTTTAGTCCGTCCCAAAAAGAATGTCACATACTATAATTAGGAACAATTTAACTTTAAAATTCCCTTTTACCCTTGATAAAATGATTTAACAACCGCACAAATATCTAACTATTGTTTTAGACCATAAGTTTTAAAAATCTTCCTTTTTTTCTTAAATAACGTGTCAAATCAAATAGTATCACATAAAATGGGATGGAGGGAGTAAAATGTATATTCGTTTTTATATTTGAATATCATTTCTGAATAACCACCACATAATAAAGAAATATAAGGGACCTATCCATTTTCTTATCTCTTATAAGAGATTTAGCTACTTCAGTTTTTGAATTGAAACAGTAAAGGAAGTGAAATACCAATAGAAATCCATTGAATGAATAAAGTAAAAGTAAAACACTCCTAATCCAACTTGTATGGAGCACTTATTATGAAGAAGTAAAAACAACTTTTTTCTTTACCAAGTTCTTCTTTGAAAATATCTATAAATAATTTTTATTTTTTAAATTTGGTTTTGATTGTACATTCAAAATTGACCAGAAAGTAGGTATGACGTGATATATCTTGGGACTGTTGAAAACTTGGAATAACTCATGTTTTGAAACTGTTAATATGACAGTTGGAATAACTTTCAGCAATTCTAAAGTCCACCTTATCCATTTACTTTTGTATTCATTGTCTTACAAGAAAGTAGTCTTCATTCTCTGCTTTATTGTGTCCGATGCAAAAACTGTGTTTGCTAAATGTTTGTACAAATGGAAACCAGGAAAACTATCATTCTCATTGAACTTGCCACGTGAGCTTTATTCCTAGTATAACACCTAAATCTTGATAAATTAGGTGTTGGAATCTATTTTCTTCTCAAATTTCAACACGCCTAAACTTAATTATTTATTTCTCAGATTTCTAGATCAAATTTAGGAAGTGATTCATCAGTTGAATGATTATTGAACATATTTTAGATTTTTAAAAGATGTTAATTCATTTTAAGCTATTTGGTTATGAGATATAACTGTTGCAATTAATGCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAGGTATAAGCCTGTTGCAATTTCTTTGTATGTATCAATTGCTGCTTGATTGGCCCAGTAAATGCTACCGGAGTCCCAAAGAATTGTATTTATTCTAGTGTTCTTGTATAAATTTAATAAAAAATTTATCTTAGTTTTCCTATCGGGTGCTATACATATTCATTTTGTGTATAATTTTCACTAGGCCCAAAATTTTTTTTAAAGAATTTTCCATAATCACATTAAAATAAGTATTTCAACCTTCATCGCATGTGAATATTATGAGACTTCACAAAAAATTGCTTTTCTGCCATTGTGAACATAACCTCAATCTAGGGCTAAAGGTTAGCGAGGTTACACTTAGGTATTTTTGATATGCTCTGATTGCAATTTGGTGGTTGAATAAAGTATCATTCTTGTCATGAAATTATTGTCTCCTCCAGTAAGATCACGCACAGATTGCATCTGAAGCTCACGAAGTGACAATAGGTTTTCCATGTTTCTTCATGAAGTATTGTTGAATTTTCAAGGTGTGATGTGATTTGATGTGTAAGATAACCTAGTCCTTTCAACACCCCATCTTCTGATCCATCCCTTCCTGGGCTACGAAAATTTGTAGTTAAATATAACACACACACCACCCTCCATTTTATATGATGTACTTTGACTTGGCACAGTTTAAGAAAGAAAGAAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAATTTGTGTGGCTGTGAATCATTTCTTTAAGGGTAAAATAGACATTTTATTGTTAAATTGTTACTTAATTAGAAATATGTCATTCTTTTTGGAACTGATTAAAAAGGAAAGCAAGTCACATAATTTGGAATAGAGGGAGTAGTTATTTATACTATTGTAGAATCATTTCGTTAAGTGGAAAAAGGGTACTAACTTGATTTATGTGTTAGTTTTAGATGTATTTTTCTATGTTGTGGAGCTAAAAAGCTTTTGGTGCTTTGTTTGGGATGTAGTTTTGTATGTGCTTATGTTGATTGGAGGTATAATGCTAATGCTTTGATCATGGAGCAAAGTGAGTTTTTCAGTGTATGGAATACAATTGATAAAGATGTTTATTGCAGTATGCTTCATGTGGTTTCTTTTCCTGTCAATTCCTTATATGAGCGCAATAAATACTACATATTCGTGCTTGCGTGCCTTTGGTGTTTCTTACTGAAAGTTATTATGGCTCAACATGACAAAAATATGCATGCACAATTTCTTAGTTCCTCTTTTTCCTTTTAGTTGAATTCAGTTCAATGTCCTGCTGCTCTATTCTTCAGGTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATG</genome_strand>
        <mrna_strand>TGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGC-AAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGTGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729453" ref_strand="+" ref_description="SGN-E729453 [LA21AE01]">
      <seq>gaaaaagtaaaaaaaccgaatgcggcgaccgcgatgaacgttgacaaggaacaatccgattgcaaccttccagaactttctccaccgtccatggagaaacctgcaccggagccggcgccggaaccgtcacagcaaccaccgagagagtctactgctccgacgccgtccatgacgcagattaaacagccgccgtctctgacgcaggtgaaacagccgccgtctctgacgcaggtgaaacagccgccgtctctgacgcaggtgaaacagccgccgtctattgatcccagtgcgctctttagcggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgatagattgcttgtcgcaaatgtgggggactctagagtcgtggcttgcagagatggttcagctattcctttgtccattgatcacaagcctgacagatcagatgagcgcgaaaggatagaacaggccggtggtttcattatctgggcaggtacatggcgtgtangtggggtccttgctgtttctcgtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38729" stop="26244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38429" g_stop="38116" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38115" i_stop="34664" i_length="3452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="457" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="556" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32976" g_stop="32818" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="715" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27959" g_stop="27873" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="802" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26585" g_stop="26544" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="844" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E729453" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38429" e_stop="38116"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32818"/>
          <exon e_start="27959" e_stop="27873"/>
          <exon e_start="26585" e_stop="26544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTAAAAAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAGGTTTGTTGCTTGTTGACTATTTACTATATCCAAAGTTTTCACAAACATGACTTTGGCTATCTCAAGGTCCATTAGTTCTTTTGTGGATTATCTTTGTTATAGGTAAACAAACTTTTTATAAGGGAAGTACATCAGAAAAAATGGGTAAAGGCGTAAAGCTCACAGGGACAGAGGGAGTTTTTCATTAGGTTTAGTCTGAATAGTTTGCATAGGATAACATATTCTTTGGTCTGTACAAAACTGTGATTCTGGAACTACTTTTTGTAATTTCTAGAACTTTCCACATTTTCATATCAATGGAAGTTCATTAATATATCAAAAACGTGTAAAAAAGTACATATACCTGAACAAACAAATTAAAAATAACAAAGCACATTTCAAACCTTCAAGCAATTAAGAACCTCAAACAAATTCAGACACTTGAAACAACTTTGTTACTCGATGCTAGCTTATCACAATTTATGTTAAGCATTCTTACAATCATAGTAACCACTACACTTAATTTGTCTGGCTAGTTGCTTCCGCTATGCGTTATAAATGAACTGATCATTAGGATCACATATATCAGCTTTCTATATCCTCTATTGTTTATACCCTTTGGTCTGATTGTTTGTATAATGATTTATTCAATAATTTAGAAAGCTTGTTATGTTGTCTTTTGTTTTGATTTGGCCATAGCCAGGCAGAACATATTTCTGCTTGGAAGATGTTAACTATGAGACTTTTGCAACAAAGGAATATGACTTGTATAATTTAAAAAATTAACCGATGAAGCATGTTTTGTATTGACTGACCTTAATCATATTTGTCTCCAAGGTCATTTGTCGGTGTAAAATTTTGTTATAGTCTTTTATCTGTAGGTTCTCACAAGAGTTATTAATCTGTGAAAACTGAAAAGCTTGCCCTGTTTTTCATTCAGAATAAGATATGAAGGAATCTGTGGGGTGTTTTATAATTTTTGTATATGGGTTTATCTTATGAATATAGGTTCATTATTACTCATTTAAAAAGAAAAAGAAGACTAGAAAGATAGGATGTTTCTTATGTATACTATCTAGTAAAGTCTCAATGATTTACCGTTTGCAGCCTTTACCATTTAACATTTGGGCTTTCCATCCCCCTATTATCCTTTTAACAACAACAACATCCCCTGTGAAATCTCACAAGTGAGGTCTTAGGAGGGTAAAATGTATGCATACCTTACAACTACCTCGTGGAGGTAGAGAGTCTGTTCCCGACATATTTTTATTAAGACTTTCCATATTTATGGAGTGGAACAATGACAAATCATATGGTTTGATGTAAACACATGGTGAGGTTATGCTTTTTTTGATGAAGTCACAACGGGTTTGGGTAAGTTATCGGTATGATATTCCGTAAGAAGAGAGAACTTCTTAGAAAGCACCATTAAGAATATAGATTGGAAAAAGTCCAAATATACCCATGAATTATACTATTTGGAGCAAATTTATCCTCCCATAAAAATGGCCTATATCTACCCCTATCGTTACACAAATGACTCATATATATCCTGTTCGATAGATGGAGCTCAAATACCCGTCATTGAAATATTTTTCCTAGTGTATTCATTATAAGTAAAGCCATGTGTAAAAAATTAAATCTTGATCAGATAGTAGCTGTTAAATTAAAGAATAGAAGTCCATTAATCCTAGTTTGTTTTGGCCTATTTTGCTTATTGAGGATTAATTTGATCAATTTTGGTGTTAAGATTAAAACAAATTCATTCTTTTTAAGATATTAAGCACTTACATTAAAAGTAAAGAACTACAAGTTGCAACACCGCAATTCAGAAGAACACATTTTACATATTAGTCAAAGCTCACCTAAATTTCATCCTTGGAAAGTTAATAGGGAAATAATTTGGGACATTTAAGGGAAGTTCCGATCTTTCACCTCATGAATTGATAAGGAAATGTACTTTATAATTCATTTTTGTACCGACCAAAAAGGAAATGGGTTATTCCATTTGAAATGGAGGAGGTACTTGTGGTTGAATTAGATTTGCAAGTTAAGAAAAAATCATTATGCAATTTAGGAGTTTTTTTAAAGATGAAGTAGGAATATTATTAACAAAAGAGCATTAACTAGCCCGTATACAAAAAGTAGAAAATCTTTAAAGAAAATATAATTTTTTATGAATGACACCAAATCATCTAAACAAAAAGTAACCTCACGGGTGCACCAAAGATAGCTAAGGGAAACAAGGTAGTTCTCAAGGGTAGAATTTTTCTCTATTCCATCAAAAGCTCTGCTATTCCCCTCTCTCCGTATGGTTCACATCTGTGCTATAGGGGTAATTTCATATGCCTTGCGTCTAGGGGTGTGCATCAGTCAGCTTAGTTCGGTTTTACATATTATTGATTCGATTTACAGTTTTTAATATGCTAAACCCATAAGATATTTTTATCGATTTTGGTCCTTAACGGTTTGGTTCTCGGTTTAACCAATAAGAAAATGCTTATAAAGCAACTATATGATTTTCCAACAATTTGACGCGACAAAACAATAATTATAACTTTACAAATGATCGTAAAAAAATAATAACTAAGGTGAAAAGAACTATACTAGTGTAATACAAAGAGAAATAAGATTCTTACATTAGGTTTTGACGTTTTGAATAATGTGAAGTTGTGAACTCAAAGTCATTGTGAAGTGTGAATTGAAGGCTAAAAGACAAAGACAGTATCTAGTAAGGTATTGAGATTAATATTTAATGTTTTAGTAAATTACTACAGCCTTAATGGGTTACCGATTTATCCAATAACCCAATATTGAAAACCAAAATCGAACCGGTAACTCTATAATGTTTTTGTATTAAATCATTGAAAAACCATTAATCCAGTAACCCAATAGCAATAAATCAATAATACTTTTTCCATTCGATTTATGAGTCGATTCGGATTTTACACACCGCTACCTTCCTCTGCCTTTCTATGAGCCTAGCTGAACATTGTTTCGAGTAAAGTAGTAAATCAGTGCAGTCTTAATTGGTTATTGATTTATCCAATAACCCAACATTGAAAACCAAACCGAACAGACAACCCAATAATATTTTTTTAATATAAAACCATTAACTCAATAGCAATAGACCAATAATACTTTTTCGGTTCGATTTTTCGGTCAGTTTGGTTTTTCACACTCCTACCTGTACCTCCTCCTCCACCTTTCTATGACCCTACATAAACATTGTTTCTTTCATAGTTCTCGACATTACCCACTCAAAACAAAACCGTCTAATTAACTCCCCCCATAACAAAGATGCTACCCGATAATGTAAGAATAGGTGATCTATGTCTTCCCTTGATTCTTTGCAACTGAGGAATTGATTAAGAAAATATAGTGGTATTTCTATCGGTGTAGAAAACAAGTGATACTAAAAGATTACATTTATAATTCAACAACATACCTGGTGAGATTCCACAAGTCGGGTCTGGGAGGATGGTGGGTGTATACATACCTTATTCCTACCTTTGTGGAGTAGAAGAAGTTGTTTCAATAGACCCTCAGACTCGGGAGAAAAGGAACCGTTTTTCCAAAACAGTTCTGAAGAAAAACAAATGCAAGAGTAAATAAGCTATGATAAAAGTATCTCTGAGAGTTTAAGTTATAATTCCTTTAATGATAATAGAATTAAGTAACCACCTCATTGTGTAAATCTTCCTAGCGAGAAACTTAAATGGAAAGATTTAAAAGTCAAACTAAATTATTGACCTAACATAGTGGATAAATAAAGAAAAATATTTCATCATTGATGGAAATTTAACAAAATAATAACTACTCCGTCCATCCCATTTTATGTGGCACCCTTTCCTTTTTAGTCCGTCCCAAAAAGAATGTCACATACTATAATTAGGAACAATTTAACTTTAAAATTCCCTTTTACCCTTGATAAAATGATTTAACAACCGCACAAATATCTAACTATTGTTTTAGACCATAAGTTTTAAAAATCTTCCTTTTTTTCTTAAATAACGTGTCAAATCAAATAGTATCACATAAAATGGGATGGAGGGAGTAAAATGTATATTCGTTTTTATATTTGAATATCATTTCTGAATAACCACCACATAATAAAGAAATATAAGGGACCTATCCATTTTCTTATCTCTTATAAGAGATTTAGCTACTTCAGTTTTTGAATTGAAACAGTAAAGGAAGTGAAATACCAATAGAAATCCATTGAATGAATAAAGTAAAAGTAAAACACTCCTAATCCAACTTGTATGGAGCACTTATTATGAAGAAGTAAAAACAACTTTTTTCTTTACCAAGTTCTTCTTTGAAAATATCTATAAATAATTTTTATTTTTTAAATTTGGTTTTGATTGTACATTCAAAATTGACCAGAAAGTAGGTATGACGTGATATATCTTGGGACTGTTGAAAACTTGGAATAACTCATGTTTTGAAACTGTTAATATGACAGTTGGAATAACTTTCAGCAATTCTAAAGTCCACCTTATCCATTTACTTTTGTATTCATTGTCTTACAAGAAAGTAGTCTTCATTCTCTGCTTTATTGTGTCCGATGCAAAAACTGTGTTTGCTAAATGTTTGTACAAATGGAAACCAGGAAAACTATCATTCTCATTGAACTTGCCACGTGAGCTTTATTCCTAGTATAACACCTAAATCTTGATAAATTAGGTGTTGGAATCTATTTTCTTCTCAAATTTCAACACGCCTAAACTTAATTATTTATTTCTCAGATTTCTAGATCAAATTTAGGAAGTGATTCATCAGTTGAATGATTATTGAACATATTTTAGATTTTTAAAAGATGTTAATTCATTTTAAGCTATTTGGTTATGAGATATAACTGTTGCAATTAATGCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAGGTATAAGCCTGTTGCAATTTCTTTGTATGTATCAATTGCTGCTTGATTGGCCCAGTAAATGCTACCGGAGTCCCAAAGAATTGTATTTATTCTAGTGTTCTTGTATAAATTTAATAAAAAATTTATCTTAGTTTTCCTATCGGGTGCTATACATATTCATTTTGTGTATAATTTTCACTAGGCCCAAAATTTTTTTTAAAGAATTTTCCATAATCACATTAAAATAAGTATTTCAACCTTCATCGCATGTGAATATTATGAGACTTCACAAAAAATTGCTTTTCTGCCATTGTGAACATAACCTCAATCTAGGGCTAAAGGTTAGCGAGGTTACACTTAGGTATTTTTGATATGCTCTGATTGCAATTTGGTGGTTGAATAAAGTATCATTCTTGTCATGAAATTATTGTCTCCTCCAGTAAGATCACGCACAGATTGCATCTGAAGCTCACGAAGTGACAATAGGTTTTCCATGTTTCTTCATGAAGTATTGTTGAATTTTCAAGGTGTGATGTGATTTGATGTGTAAGATAACCTAGTCCTTTCAACACCCCATCTTCTGATCCATCCCTTCCTGGGCTACGAAAATTTGTAGTTAAATATAACACACACACCACCCTCCATTTTATATGATGTACTTTGACTTGGCACAGTTTAAGAAAGAAAGAAAGACTTTTAAAACTTGTGGTCCAAAATGAATGATAGAAATTTGTGTGGCTGTGAATCATTTCTTTAAGGGTAAAATAGACATTTTATTGTTAAATTGTTACTTAATTAGAAATATGTCATTCTTTTTGGAACTGATTAAAAAGGAAAGCAAGTCACATAATTTGGAATAGAGGGAGTAGTTATTTATACTATTGTAGAATCATTTCGTTAAGTGGAAAAAGGGTACTAACTTGATTTATGTGTTAGTTTTAGATGTATTTTTCTATGTTGTGGAGCTAAAAAGCTTTTGGTGCTTTGTTTGGGATGTAGTTTTGTATGTGCTTATGTTGATTGGAGGTATAATGCTAATGCTTTGATCATGGAGCAAAGTGAGTTTTTCAGTGTATGGAATACAATTGATAAAGATGTTTATTGCAGTATGCTTCATGTGGTTTCTTTTCCTGTCAATTCCTTATATGAGCGCAATAAATACTACATATTCGTGCTTGCGTGCCTTTGGTGTTTCTTACTGAAAGTTATTATGGCTCAACATGACAAAAATATGCATGCACAATTTCTTAGTTCCTCTTTTTCCTTTTAGTTGAATTCAGTTCAATGTCCTGCTGCTCTATTCTTCAGGTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCAT</genome_strand>
        <mrna_strand>GAAAAAGTAAAAAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGGCGTGTANGTGGGGTCCTTGCTGTTTCTCGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241872" ref_strand="+" ref_description="SGN-E241872 [cLED-27-M16]">
      <seq>tggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgatagattgcttgtcgcacatgtgggggactctagagtcgtggcttgcagagatggttcagctattcctttgtccattgatcacaagcctgacagatcagatgagcgtgaaaggatagaacaggccggtggtttcattatctgggcaggtacatggcgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="34954" stop="27561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34654" g_stop="34521" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="233" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32976" g_stop="32818" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="391" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27959" g_stop="27877" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="474" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E241872" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34654" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32818"/>
          <exon e_start="27959" e_stop="27877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAGGTTTGTTGCTTGTTGACTATTTACTATATCCAAAGTTTTCACAAACATGACTTTGGCTATCTCAAGGTCCATTAGTTCTTTTGTGGATTATCTTTGTTATAGGTAAACAAACTTTTTATAAGGGAAGTACATCAGAAAAAATGGGTAAAGGCGTAAAGCTCACAGGGACAGAGGGAGTTTTTCATTAGGTTTAGTCTGAATAGTTTGCATAGGATAACATATTCTTTGGTCTGTACAAAACTGTGATTCTGGAACTACTTTTTGTAATTTCTAGAACTTTCCACATTTTCATATCAATGGAAGTTCATTAATATATCAAAAACGTGTAAAAAAGTACATATACCTGAACAAACAAATTAAAAATAACAAAGCACATTTCAAACCTTCAAGCAATTAAGAACCTCAAACAAATTCAGACACTTGAAACAACTTTGTTACTCGATGCTAGCTTATCACAATTTATGTTAAGCATTCTTACAATCATAGTAACCACTACACTTAATTTGTCTGGCTAGTTGCTTCCGCTATGCGTTATAAATGAACTGATCATTAGGATCACATATATCAGCTTTCTATATCCTCTATTGTTTATACCCTTTGGTCTGATTGTTTGTATAATGATTTATTCAATAATTTAGAAAGCTTGTTATGTTGTCTTTTGTTTTGATTTGGCCATAGCCAGGCAGAACATATTTCTGCTTGGAAGATGTTAACTATGAGACTTTTGCAACAAAGGAATATGACTTGTATAATTTAAAAAATTAACCGATGAAGCATGTTTTGTATTGACTGACCTTAATCATATTTGTCTCCAAGGTCATTTGTCGGTGTAAAATTTTGTTATAGTCTTTTATCTGTAGGTTCTCACAAGAGTTATTAATCTGTGAAAACTGAAAAGCTTGCCCTGTTTTTCATTCAGAATAAGATATGAAGGAATCTGTGGGGTGTTTTATAATTTTTGTATATGGGTTTATCTTATGAATATAGGTTCATTATTACTCATTTAAAAAGAAAAAGAAGACTAGAAAGATAGGATGTTTCTTATGTATACTATCTAGTAAAGTCTCAATGATTTACCGTTTGCAGCCTTTACCATTTAACATTTGGGCTTTCCATCCCCCTATTATCCTTTTAACAACAACAACATCCCCTGTGAAATCTCACAAGTGAGGTCTTAGGAGGGTAAAATGTATGCATACCTTACAACTACCTCGTGGAGGTAGAGAGTCTGTTCCCGACATATTTTTATTAAGACTTTCCATATTTATGGAGTGGAACAATGACAAATCATATGGTTTGATGTAAACACATGGTGAGGTTATGCTTTTTTTGATGAAGTCACAACGGGTTTGGGTAAGTTATCGGTATGATATTCCGTAAGAAGAGAGAACTTCTTAGAAAGCACCATTAAGAATATAGATTGGAAAAAGTCCAAATATACCCATGAATTATACTATTTGGAGCAAATTTATCCTCCCATAAAAATGGCCTATATCTACCCCTATCGTTACACAAATGACTCATATATATCCTGTTCGATAGATGGAGCTCAAATACCCGTCATTGAAATATTTTTCCTAGTGTATTCATTATAAGTAAAGCCATGTGTAAAAAATTAAATCTTGATCAGATAGTAGCTGTTAAATTAAAGAATAGAAGTCCATTAATCCTAGTTTGTTTTGGCCTATTTTGCTTATTGAGGATTAATTTGATCAATTTTGGTGTTAAGATTAAAACAAATTCATTCTTTTTAAGATATTAAGCACTTACATTAAAAGTAAAGAACTACAAGTTGCAACACCGCAATTCAGAAGAACACATTTTACATATTAGTCAAAGCTCACCTAAATTTCATCCTTGGAAAGTTAATAGGGAAATAATTTGGGACATTTAAGGGAAGTTCCGATCTTTCACCTCATGAATTGATAAGGAAATGTACTTTATAATTCATTTTTGTACCGACCAAAAAGGAAATGGGTTATTCCATTTGAAATGGAGGAGGTACTTGTGGTTGAATTAGATTTGCAAGTTAAGAAAAAATCATTATGCAATTTAGGAGTTTTTTTAAAGATGAAGTAGGAATATTATTAACAAAAGAGCATTAACTAGCCCGTATACAAAAAGTAGAAAATCTTTAAAGAAAATATAATTTTTTATGAATGACACCAAATCATCTAAACAAAAAGTAACCTCACGGGTGCACCAAAGATAGCTAAGGGAAACAAGGTAGTTCTCAAGGGTAGAATTTTTCTCTATTCCATCAAAAGCTCTGCTATTCCCCTCTCTCCGTATGGTTCACATCTGTGCTATAGGGGTAATTTCATATGCCTTGCGTCTAGGGGTGTGCATCAGTCAGCTTAGTTCGGTTTTACATATTATTGATTCGATTTACAGTTTTTAATATGCTAAACCCATAAGATATTTTTATCGATTTTGGTCCTTAACGGTTTGGTTCTCGGTTTAACCAATAAGAAAATGCTTATAAAGCAACTATATGATTTTCCAACAATTTGACGCGACAAAACAATAATTATAACTTTACAAATGATCGTAAAAAAATAATAACTAAGGTGAAAAGAACTATACTAGTGTAATACAAAGAGAAATAAGATTCTTACATTAGGTTTTGACGTTTTGAATAATGTGAAGTTGTGAACTCAAAGTCATTGTGAAGTGTGAATTGAAGGCTAAAAGACAAAGACAGTATCTAGTAAGGTATTGAGATTAATATTTAATGTTTTAGTAAATTACTACAGCCTTAATGGGTTACCGATTTATCCAATAACCCAATATTGAAAACCAAAATCGAACCGGTAACTCTATAATGTTTTTGTATTAAATCATTGAAAAACCATTAATCCAGTAACCCAATAGCAATAAATCAATAATACTTTTTCCATTCGATTTATGAGTCGATTCGGATTTTACACACCGCTACCTTCCTCTGCCTTTCTATGAGCCTAGCTGAACATTGTTTCGAGTAAAGTAGTAAATCAGTGCAGTCTTAATTGGTTATTGATTTATCCAATAACCCAACATTGAAAACCAAACCGAACAGACAACCCAATAATATTTTTTTAATATAAAACCATTAACTCAATAGCAATAGACCAATAATACTTTTTCGGTTCGATTTTTCGGTCAGTTTGGTTTTTCACACTCCTACCTGTACCTCCTCCTCCACCTTTCTATGACCCTACATAAACATTGTTTCTTTCATAGTTCTCGACATTACCCACTCAAAACAAAACCGTCTAATTAACTCCCCCCATAACAAAGATGCTACCCGATAATGTAAGAATAGGTGATCTATGTCTTCCCTTGATTCTTTGCAACTGAGGAATTGATTAAGAAAATATAGTGGTATTTCTATCGGTGTAGAAAACAAGTGATACTAAAAGATTACATTTATAATTCAACAACATACCTGGTGAGATTCCACAAGTCGGGTCTGGGAGGATGGTGGGTGTATACATACCTTATTCCTACCTTTGTGGAGTAGAAGAAGTTGTTTCAATAGACCCTCAGACTCGGGAGAAAAGGAACCGTTTTTCCAAAACAGTTCTGAAGAAAAACAAATGCAAGAGTAAATAAGCTATGATAAAAGTATCTCTGAGAGTTTAAGTTATAATTCCTTTAATGATAATAGAATTAAGTAACCACCTCATTGTGTAAATCTTCCTAGCGAGAAACTTAAATGGAAAGATTTAAAAGTCAAACTAAATTATTGACCTAACATAGTGGATAAATAAAGAAAAATATTTCATCATTGATGGAAATTTAACAAAATAATAACTACTCCGTCCATCCCATTTTATGTGGCACCCTTTCCTTTTTAGTCCGTCCCAAAAAGAATGTCACATACTATAATTAGGAACAATTTAACTTTAAAATTCCCTTTTACCCTTGATAAAATGATTTAACAACCGCACAAATATCTAACTATTGTTTTAGACCATAAGTTTTAAAAATCTTCCTTTTTTTCTTAAATAACGTGTCAAATCAAATAGTATCACATAAAATGGGATGGAGGGAGTAAAATGTATATTCGTTTTTATATTTGAATATCATTTCTGAATAACCACCACATAATAAAGAAATATAAGGGACCTATCCATTTTCTTATCTCTTATAAGAGATTTAGCTACTTCAGTTTTTGAATTGAAACAGTAAAGGAAGTGAAATACCAATAGAAATCCATTGAATGAATAAAGTAAAAGTAAAACACTCCTAATCCAACTTGTATGGAGCACTTATTATGAAGAAGTAAAAACAACTTTTTTCTTTACCAAGTTCTTCTTTGAAAATATCTATAAATAATTTTTATTTTTTAAATTTGGTTTTGATTGTACATTCAAAATTGACCAGAAAGTAGGTATGACGTGATATATCTTGGGACTGTTGAAAACTTGGAATAACTCATGTTTTGAAACTGTTAATATGACAGTTGGAATAACTTTCAGCAATTCTAAAGTCCACCTTATCCATTTACTTTTGTATTCATTGTCTTACAAGAAAGTAGTCTTCATTCTCTGCTTTATTGTGTCCGATGCAAAAACTGTGTTTGCTAAATGTTTGTACAAATGGAAACCAGGAAAACTATCATTCTCATTGAACTTGCCACGTGAGCTTTATTCCTAGTATAACACCTAAATCTTGATAAATTAGGTGTTGGAATCTATTTTCTTCTCAAATTTCAACACGCCTAAACTTAATTATTTATTTCTCAGATTTCTAGATCAAATTTAGGAAGTGATTCATCAGTTGAATGATTATTGAACATATTTTAGATTTTTAAAAGATGTTAATTCATTTTAAGCTATTTGGTTATGAGATATAACTGTTGCAATTAATGCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGG</genome_strand>
        <mrna_strand>TGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGC-AAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCACATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGTGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232899" ref_strand="+" ref_description="SGN-E232899 [cLED-8-D8]">
      <seq>tggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgatagattgcttgtcgcaaatgtgggggactctagagtcgtggcttgcagagatggttcagctattcctttgtccattgatcacaagcctgacagatcagatgagcgtgaaaggatagaacaggccggtggtttcattatctgggcaggtacatggcgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="34954" stop="27561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34654" g_stop="34521" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="233" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32976" g_stop="32818" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="391" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27959" g_stop="27877" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="474" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E232899" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34654" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32818"/>
          <exon e_start="27959" e_stop="27877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAGGTTTGTTGCTTGTTGACTATTTACTATATCCAAAGTTTTCACAAACATGACTTTGGCTATCTCAAGGTCCATTAGTTCTTTTGTGGATTATCTTTGTTATAGGTAAACAAACTTTTTATAAGGGAAGTACATCAGAAAAAATGGGTAAAGGCGTAAAGCTCACAGGGACAGAGGGAGTTTTTCATTAGGTTTAGTCTGAATAGTTTGCATAGGATAACATATTCTTTGGTCTGTACAAAACTGTGATTCTGGAACTACTTTTTGTAATTTCTAGAACTTTCCACATTTTCATATCAATGGAAGTTCATTAATATATCAAAAACGTGTAAAAAAGTACATATACCTGAACAAACAAATTAAAAATAACAAAGCACATTTCAAACCTTCAAGCAATTAAGAACCTCAAACAAATTCAGACACTTGAAACAACTTTGTTACTCGATGCTAGCTTATCACAATTTATGTTAAGCATTCTTACAATCATAGTAACCACTACACTTAATTTGTCTGGCTAGTTGCTTCCGCTATGCGTTATAAATGAACTGATCATTAGGATCACATATATCAGCTTTCTATATCCTCTATTGTTTATACCCTTTGGTCTGATTGTTTGTATAATGATTTATTCAATAATTTAGAAAGCTTGTTATGTTGTCTTTTGTTTTGATTTGGCCATAGCCAGGCAGAACATATTTCTGCTTGGAAGATGTTAACTATGAGACTTTTGCAACAAAGGAATATGACTTGTATAATTTAAAAAATTAACCGATGAAGCATGTTTTGTATTGACTGACCTTAATCATATTTGTCTCCAAGGTCATTTGTCGGTGTAAAATTTTGTTATAGTCTTTTATCTGTAGGTTCTCACAAGAGTTATTAATCTGTGAAAACTGAAAAGCTTGCCCTGTTTTTCATTCAGAATAAGATATGAAGGAATCTGTGGGGTGTTTTATAATTTTTGTATATGGGTTTATCTTATGAATATAGGTTCATTATTACTCATTTAAAAAGAAAAAGAAGACTAGAAAGATAGGATGTTTCTTATGTATACTATCTAGTAAAGTCTCAATGATTTACCGTTTGCAGCCTTTACCATTTAACATTTGGGCTTTCCATCCCCCTATTATCCTTTTAACAACAACAACATCCCCTGTGAAATCTCACAAGTGAGGTCTTAGGAGGGTAAAATGTATGCATACCTTACAACTACCTCGTGGAGGTAGAGAGTCTGTTCCCGACATATTTTTATTAAGACTTTCCATATTTATGGAGTGGAACAATGACAAATCATATGGTTTGATGTAAACACATGGTGAGGTTATGCTTTTTTTGATGAAGTCACAACGGGTTTGGGTAAGTTATCGGTATGATATTCCGTAAGAAGAGAGAACTTCTTAGAAAGCACCATTAAGAATATAGATTGGAAAAAGTCCAAATATACCCATGAATTATACTATTTGGAGCAAATTTATCCTCCCATAAAAATGGCCTATATCTACCCCTATCGTTACACAAATGACTCATATATATCCTGTTCGATAGATGGAGCTCAAATACCCGTCATTGAAATATTTTTCCTAGTGTATTCATTATAAGTAAAGCCATGTGTAAAAAATTAAATCTTGATCAGATAGTAGCTGTTAAATTAAAGAATAGAAGTCCATTAATCCTAGTTTGTTTTGGCCTATTTTGCTTATTGAGGATTAATTTGATCAATTTTGGTGTTAAGATTAAAACAAATTCATTCTTTTTAAGATATTAAGCACTTACATTAAAAGTAAAGAACTACAAGTTGCAACACCGCAATTCAGAAGAACACATTTTACATATTAGTCAAAGCTCACCTAAATTTCATCCTTGGAAAGTTAATAGGGAAATAATTTGGGACATTTAAGGGAAGTTCCGATCTTTCACCTCATGAATTGATAAGGAAATGTACTTTATAATTCATTTTTGTACCGACCAAAAAGGAAATGGGTTATTCCATTTGAAATGGAGGAGGTACTTGTGGTTGAATTAGATTTGCAAGTTAAGAAAAAATCATTATGCAATTTAGGAGTTTTTTTAAAGATGAAGTAGGAATATTATTAACAAAAGAGCATTAACTAGCCCGTATACAAAAAGTAGAAAATCTTTAAAGAAAATATAATTTTTTATGAATGACACCAAATCATCTAAACAAAAAGTAACCTCACGGGTGCACCAAAGATAGCTAAGGGAAACAAGGTAGTTCTCAAGGGTAGAATTTTTCTCTATTCCATCAAAAGCTCTGCTATTCCCCTCTCTCCGTATGGTTCACATCTGTGCTATAGGGGTAATTTCATATGCCTTGCGTCTAGGGGTGTGCATCAGTCAGCTTAGTTCGGTTTTACATATTATTGATTCGATTTACAGTTTTTAATATGCTAAACCCATAAGATATTTTTATCGATTTTGGTCCTTAACGGTTTGGTTCTCGGTTTAACCAATAAGAAAATGCTTATAAAGCAACTATATGATTTTCCAACAATTTGACGCGACAAAACAATAATTATAACTTTACAAATGATCGTAAAAAAATAATAACTAAGGTGAAAAGAACTATACTAGTGTAATACAAAGAGAAATAAGATTCTTACATTAGGTTTTGACGTTTTGAATAATGTGAAGTTGTGAACTCAAAGTCATTGTGAAGTGTGAATTGAAGGCTAAAAGACAAAGACAGTATCTAGTAAGGTATTGAGATTAATATTTAATGTTTTAGTAAATTACTACAGCCTTAATGGGTTACCGATTTATCCAATAACCCAATATTGAAAACCAAAATCGAACCGGTAACTCTATAATGTTTTTGTATTAAATCATTGAAAAACCATTAATCCAGTAACCCAATAGCAATAAATCAATAATACTTTTTCCATTCGATTTATGAGTCGATTCGGATTTTACACACCGCTACCTTCCTCTGCCTTTCTATGAGCCTAGCTGAACATTGTTTCGAGTAAAGTAGTAAATCAGTGCAGTCTTAATTGGTTATTGATTTATCCAATAACCCAACATTGAAAACCAAACCGAACAGACAACCCAATAATATTTTTTTAATATAAAACCATTAACTCAATAGCAATAGACCAATAATACTTTTTCGGTTCGATTTTTCGGTCAGTTTGGTTTTTCACACTCCTACCTGTACCTCCTCCTCCACCTTTCTATGACCCTACATAAACATTGTTTCTTTCATAGTTCTCGACATTACCCACTCAAAACAAAACCGTCTAATTAACTCCCCCCATAACAAAGATGCTACCCGATAATGTAAGAATAGGTGATCTATGTCTTCCCTTGATTCTTTGCAACTGAGGAATTGATTAAGAAAATATAGTGGTATTTCTATCGGTGTAGAAAACAAGTGATACTAAAAGATTACATTTATAATTCAACAACATACCTGGTGAGATTCCACAAGTCGGGTCTGGGAGGATGGTGGGTGTATACATACCTTATTCCTACCTTTGTGGAGTAGAAGAAGTTGTTTCAATAGACCCTCAGACTCGGGAGAAAAGGAACCGTTTTTCCAAAACAGTTCTGAAGAAAAACAAATGCAAGAGTAAATAAGCTATGATAAAAGTATCTCTGAGAGTTTAAGTTATAATTCCTTTAATGATAATAGAATTAAGTAACCACCTCATTGTGTAAATCTTCCTAGCGAGAAACTTAAATGGAAAGATTTAAAAGTCAAACTAAATTATTGACCTAACATAGTGGATAAATAAAGAAAAATATTTCATCATTGATGGAAATTTAACAAAATAATAACTACTCCGTCCATCCCATTTTATGTGGCACCCTTTCCTTTTTAGTCCGTCCCAAAAAGAATGTCACATACTATAATTAGGAACAATTTAACTTTAAAATTCCCTTTTACCCTTGATAAAATGATTTAACAACCGCACAAATATCTAACTATTGTTTTAGACCATAAGTTTTAAAAATCTTCCTTTTTTTCTTAAATAACGTGTCAAATCAAATAGTATCACATAAAATGGGATGGAGGGAGTAAAATGTATATTCGTTTTTATATTTGAATATCATTTCTGAATAACCACCACATAATAAAGAAATATAAGGGACCTATCCATTTTCTTATCTCTTATAAGAGATTTAGCTACTTCAGTTTTTGAATTGAAACAGTAAAGGAAGTGAAATACCAATAGAAATCCATTGAATGAATAAAGTAAAAGTAAAACACTCCTAATCCAACTTGTATGGAGCACTTATTATGAAGAAGTAAAAACAACTTTTTTCTTTACCAAGTTCTTCTTTGAAAATATCTATAAATAATTTTTATTTTTTAAATTTGGTTTTGATTGTACATTCAAAATTGACCAGAAAGTAGGTATGACGTGATATATCTTGGGACTGTTGAAAACTTGGAATAACTCATGTTTTGAAACTGTTAATATGACAGTTGGAATAACTTTCAGCAATTCTAAAGTCCACCTTATCCATTTACTTTTGTATTCATTGTCTTACAAGAAAGTAGTCTTCATTCTCTGCTTTATTGTGTCCGATGCAAAAACTGTGTTTGCTAAATGTTTGTACAAATGGAAACCAGGAAAACTATCATTCTCATTGAACTTGCCACGTGAGCTTTATTCCTAGTATAACACCTAAATCTTGATAAATTAGGTGTTGGAATCTATTTTCTTCTCAAATTTCAACACGCCTAAACTTAATTATTTATTTCTCAGATTTCTAGATCAAATTTAGGAAGTGATTCATCAGTTGAATGATTATTGAACATATTTTAGATTTTTAAAAGATGTTAATTCATTTTAAGCTATTTGGTTATGAGATATAACTGTTGCAATTAATGCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGG</genome_strand>
        <mrna_strand>TGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGC-AAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGTGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458522" ref_strand="+" ref_description="SGN-E458522 [cPRO-6-C3]">
      <seq>gtacaactatgaacgttgacaaggaacaatccgatcgcaaccttccagaactttctccaccgtctatggagaaacctgcgccggcgccggcacccgaaccgtcacagcaaccaccaagagagtccactgctccgacgccgtccctgccgcagattaaacagccgccatccctgccgctggtgaaacagccgccgtctctgacgcaggtgaaacagacgccgtctattgatcccagtgcgctctttagtggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgccgattaccttaatgaagaaaaagggcagcaaaaagatgccggttcaacagcgtcaactgctgttcttttaagtgataaattgcttgtcgcaaatgtgggggactctatagacgtggcttgtagagatggttcanctattcctttgtccatcgatcacaagcctgacagatctgatgagcgtgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38702" stop="27609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38404" g_stop="38172" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221">
            <donor d_prob="0.000" d_score="0.85"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35950" g_stop="35944" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="241" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34908" g_stop="34886" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="262" r_length="21" r_score="0.522"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="405" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="504" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32976" g_stop="32818" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="663" r_length="159" r_score="0.950"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27959" g_stop="27907" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="716" r_length="53" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E458522" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38404" e_stop="38172"/>
          <exon e_start="35950" e_stop="35944"/>
          <exon e_start="34908" e_stop="34886"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32818"/>
          <exon e_start="27959" e_stop="27907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAGGTTTGTTGCTTGTTGACTATTTACTATATCCAAAGTTTTCACAAACATGACTTTGGCTATCTCAAGGTCCATTAGTTCTTTTGTGGATTATCTTTGTTATAGGTAAACAAACTTTTTATAAGGGAAGTACATCAGAAAAAATGGGTAAAGGCGTAAAGCTCACAGGGACAGAGGGAGTTTTTCATTAGGTTTAGTCTGAATAGTTTGCATAGGATAACATATTCTTTGGTCTGTACAAAACTGTGATTCTGGAACTACTTTTTGTAATTTCTAGAACTTTCCACATTTTCATATCAATGGAAGTTCATTAATATATCAAAAACGTGTAAAAAAGTACATATACCTGAACAAACAAATTAAAAATAACAAAGCACATTTCAAACCTTCAAGCAATTAAGAACCTCAAACAAATTCAGACACTTGAAACAACTTTGTTACTCGATGCTAGCTTATCACAATTTATGTTAAGCATTCTTACAATCATAGTAACCACTACACTTAATTTGTCTGGCTAGTTGCTTCCGCTATGCGTTATAAATGAACTGATCATTAGGATCACATATATCAGCTTTCTATATCCTCTATTGTTTATACCCTTTGGTCTGATTGTTTGTATAATGATTTATTCAATAATTTAGAAAGCTTGTTATGTTGTCTTTTGTTTTGATTTGGCCATAGCCAGGCAGAACATATTTCTGCTTGGAAGATGTTAACTATGAGACTTTTGCAACAAAGGAATATGACTTGTATAATTTAAAAAATTAACCGATGAAGCATGTTTTGTATTGACTGACCTTAATCATATTTGTCTCCAAGGTCATTTGTCGGTGTAAAATTTTGTTATAGTCTTTTATCTGTAGGTTCTCACAAGAGTTATTAATCTGTGAAAACTGAAAAGCTTGCCCTGTTTTTCATTCAGAATAAGATATGAAGGAATCTGTGGGGTGTTTTATAATTTTTGTATATGGGTTTATCTTATGAATATAGGTTCATTATTACTCATTTAAAAAGAAAAAGAAGACTAGAAAGATAGGATGTTTCTTATGTATACTATCTAGTAAAGTCTCAATGATTTACCGTTTGCAGCCTTTACCATTTAACATTTGGGCTTTCCATCCCCCTATTATCCTTTTAACAACAACAACATCCCCTGTGAAATCTCACAAGTGAGGTCTTAGGAGGGTAAAATGTATGCATACCTTACAACTACCTCGTGGAGGTAGAGAGTCTGTTCCCGACATATTTTTATTAAGACTTTCCATATTTATGGAGTGGAACAATGACAAATCATATGGTTTGATGTAAACACATGGTGAGGTTATGCTTTTTTTGATGAAGTCACAACGGGTTTGGGTAAGTTATCGGTATGATATTCCGTAAGAAGAGAGAACTTCTTAGAAAGCACCATTAAGAATATAGATTGGAAAAAGTCCAAATATACCCATGAATTATACTATTTGGAGCAAATTTATCCTCCCATAAAAATGGCCTATATCTACCCCTATCGTTACACAAATGACTCATATATATCCTGTTCGATAGATGGAGCTCAAATACCCGTCATTGAAATATTTTTCCTAGTGTATTCATTATAAGTAAAGCCATGTGTAAAAAATTAAATCTTGATCAGATAGTAGCTGTTAAATTAAAGAATAGAAGTCCATTAATCCTAGTTTGTTTTGGCCTATTTTGCTTATTGAGGATTAATTTGATCAATTTTGGTGTTAAGATTAAAACAAATTCATTCTTTTTAAGATATTAAGCACTTACATTAAAAGTAAAGAACTACAAGTTGCAACACCGCAATTCAGAAGAACACATTTTACATATTAGTCAAAGCTCACCTAAATTTCATCCTTGGAAAGTTAATAGGGAAATAATTTGGGACATTTAAGGGAAGTTCCGATCTTTCACCTCATGAATTGATAAGGAAATGTACTTTATAATTCATTTTTGTACCGACCAAAAAGGAAATGGGTTATTCCATTTGAAATGGAGGAGGTACTTGTGGTTGAATTAGATTTGCAAGTTAAGAAAAAATCATTATGCAATTTAGGAGTTTTTTTAAAGATGAAGTAGGAATATTATTAACAAAAGAGCATTAACTAGCCCGTATACAAAAAGTAGAAAATCTTTAAAGAAAATATAATTTTTTATGAATGACACCAAATCATCTAAACAAAAAGTAACCTCACGGGTGCACCAAAGATAGCTAAGGGAAACAAGGTAGTTCTCAAGGGTAGAATTTTTCTCTATTCCATCAAAAGCTCTGCTATTCCCCTCTCTCCGTATGGTTCACATCTGTGCTATAGGGGTAATTTCATATGCCTTGCGTCTAGGGGTGTGCATCAGTCAGCTTAGTTCGGTTTTACATATTATTGATTCGATTTACAGTTTTTAATATGCTAAACCCATAAGATATTTTTATCGATTTTGGTCCTTAACGGTTTGGTTCTCGGTTTAACCAATAAGAAAATGCTTATAAAGCAACTATATGATTTTCCAACAATTTGACGCGACAAAACAATAATTATAACTTTACAAATGATCGTAAAAAAATAATAACTAAGGTGAAAAGAACTATACTAGTGTAATACAAAGAGAAATAAGATTCTTACATTAGGTTTTGACGTTTTGAATAATGTGAAGTTGTGAACTCAAAGTCATTGTGAAGTGTGAATTGAAGGCTAAAAGACAAAGACAGTATCTAGTAAGGTATTGAGATTAATATTTAATGTTTTAGTAAATTACTACAGCCTTAATGGGTTACCGATTTATCCAATAACCCAATATTGAAAACCAAAATCGAACCGGTAACTCTATAATGTTTTTGTATTAAATCATTGAAAAACCATTAATCCAGTAACCCAATAGCAATAAATCAATAATACTTTTTCCATTCGATTTATGAGTCGATTCGGATTTTACACACCGCTACCTTCCTCTGCCTTTCTATGAGCCTAGCTGAACATTGTTTCGAGTAAAGTAGTAAATCAGTGCAGTCTTAATTGGTTATTGATTTATCCAATAACCCAACATTGAAAACCAAACCGAACAGACAACCCAATAATATTTTTTTAATATAAAACCATTAACTCAATAGCAATAGACCAATAATACTTTTTCGGTTCGATTTTTCGGTCAGTTTGGTTTTTCACACTCCTACCTGTACCTCCTCCTCCACCTTTCTATGACCCTACATAAACATTGTTTCTTTCATAGTTCTCGACATTACCCACTCAAAACAAAACCGTCTAATTAACTCCCCCCATAACAAAGATGCTACCCGATAATGTAAGAATAGGTGATCTATGTCTTCCCTTGATTCTTTGCAACTGAGGAATTGATTAAGAAAATATAGTGGTATTTCTATCGGTGTAGAAAACAAGTGATACTAAAAGATTACATTTATAATTCAACAACATACCTGGTGAGATTCCACAAGTCGGGTCTGGGAGGATGGTGGGTGTATACATACCTTATTCCTACCTTTGTGGAGTAGAAGAAGTTGTTTCAATAGACCCTCAGACTCGGGAGAAAAGGAACCGTTTTTCCAAAACAGTTCTGAAGAAAAACAAATGCAAGAGTAAATAAGCTATGATAAAAGTATCTCTGAGAGTTTAAGTTATAATTCCTTTAATGATAATAGAATTAAGTAACCACCTCATTGTGTAAATCTTCCTAGCGAGAAACTTAAATGGAAAGATTTAAAAGTCAAACTAAATTATTGACCTAACATAGTGGATAAATAAAGAAAAATATTTCATCATTGATGGAAATTTAACAAAATAATAACTACTCCGTCCATCCCATTTTATGTGGCACCCTTTCCTTTTTAGTCCGTCCCAAAAAGAATGTCACATACTATAATTAGGAACAATTTAACTTTAAAATTCCCTTTTACCCTTGATAAAATGATTTAACAACCGCACAAATATCTAACTATTGTTTTAGACCATAAGTTTTAAAAATCTTCCTTTTTTTCTTAAATAACGTGTCAAATCAAATAGTATCACATAAAATGGGATGGAGGGAGTAAAATGTATATTCGTTTTTATATTTGAATATCATTTCTGAATAACCACCACATAATAAAGAAATATAAGGGACCTATCCATTTTCTTATCTCTTATAAGAGATTTAGCTACTTCAGTTTTTGAATTGAAACAGTAAAGGAAGTGAAATACCAATAGAAATCCATTGAATGAATAAAGTAAAAGTAAAACACTCCTAATCCAACTTGTATGGAGCACTTATTATGAAGAAGTAAAAACAACTTTTTTCTTTACCAAGTTCTTCTTTGAAAATATCTATAAATAATTTTTATTTTTTAAATTTGGTTTTGATTGTACATTCAAAATTGACCAGAAAGTAGGTATGACGTGATATATCTTGGGACTGTTGAAAACTTGGAATAACTCATGTTTTGAAACTGTTAATATGACAGTTGGAATAACTTTCAGCAATTCTAAAGTCCACCTTATCCATTTACTTTTGTATTCATTGTCTTACAAGAAAGTAGTCTTCATTCTCTGCTTTATTGTGTCCGATGCAAAAACTGTGTTTGCTAAATGTTTGTACAAATGGAAACCAGGAAAACTATCATTCTCATTGAACTTGCCACGTGAGCTTTATTCCTAGTATAACACCTAAATCTTGATAAATTAGGTGTTGGAATCTATTTTCTTCTCAAATTTCAACACGCCTAAACTTAATTATTTATTTCTCAGATTTCTAGATCAAATTTAGGAAGTGATTCATCAGTTGAATGATTATTGAACATATTTTAGATTTTTAAAAGATGTTAATTCATTTTAAGCTATTTGGTTATGAGATATAACTGTTGCAATTAATGCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGG</genome_strand>
        <mrna_strand>GTACAACTATGAACGTTGACAAGGAACAATCCGATCGCAACCTTCCAGAACTTTCTCCACCGTCTATGGAGAAACCTGCGCCGGCGCCGGCACCCGAACCGTCACAGCAACCACCAAGAGAGTCCACTGCTCCGACGCCGTCCCTGCCGCAGATTAAACAGCCGCCATCCCTGCCGCTGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGACGCCGTCTATTGATCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGTGGCGG-CGGT-ATTAG..............................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGCCGATTACCTTAATGAAGAAAAAGGGCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAAGTGATAAATTGCTTGTCGCAAATGTGGGGGACTCTATAGACGTGGCTTGTAGAGATGGTTCAN..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCCTTTGTCCATCGATCACAAGCCTGACAGATCTGATGAGCGTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274787" ref_strand="+" ref_description="SGN-E274787 [cLEN-13-G16]">
      <seq>gttgacaaggaacaatccgattgcaaccttccagaactttctccaccgtccatggagaaacctgcaccggagccggcgccggaaccgtcacagcaaccaccgagagagtctactgctccgacgccgtccatgacgcagattaaacagccgccgtctctgacgcaggtgaaacagccgccgtctctgacgcaggtgaaacagccgccgtctattgatcccagtgcgctctttagcggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgatagattgcttgtcgcaaatgtgggggactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38690" stop="32546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38390" g_stop="38172" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35950" g_stop="35944" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="227" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34908" g_stop="34886" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="248" r_length="21" r_score="0.522"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="391" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="490" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32976" g_stop="32846" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="621" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E274787" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38390" e_stop="38172"/>
          <exon e_start="35950" e_stop="35944"/>
          <exon e_start="34908" e_stop="34886"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCT</genome_strand>
        <mrna_strand>GTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCGGCGG-CGGT-ATTAG..............................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276680" ref_strand="+" ref_description="SGN-E276680 [cLEN-14-G16]">
      <seq>gttgacaaggaacaatccgattgcaaccttccagaactttctccaccgtccatggagaaacctgcaccggagccggcgccggaaccgtcacagcaaccaccgagagagtctactgctccgacgccgtccatgacgcagattaaacagccgccgtctctgacgcaggtgaaacagccgccgtctctgacgcaggtgaaacagccgccgtctattgatcccagtgcgctctttagcggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgatagattgcttgtcgcaaatgtgggggactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38690" stop="32546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38390" g_stop="38172" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35950" g_stop="35944" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="227" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34908" g_stop="34886" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="248" r_length="21" r_score="0.522"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="391" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="490" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32976" g_stop="32846" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="621" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E276680" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38390" e_stop="38172"/>
          <exon e_start="35950" e_stop="35944"/>
          <exon e_start="34908" e_stop="34886"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCT</genome_strand>
        <mrna_strand>GTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCGGCGG-CGGT-ATTAG..............................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262493" ref_strand="+" ref_description="SGN-E262493 [cLEG-56-J22]">
      <seq>agaaacctgcaccggagccggcgccggaaccgtcacagcaaccaccgagagagtctactgctccgacgccgtccatgacgcagattaaacagccgccgtctctgacgcaggtgaaacagccgccgtctctgacgcaggtgaaacagccgccgtctattgatcccagtgcgctctttagcggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgatagattgcttgtcgcacatgtgggggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38635" stop="32547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38335" g_stop="38172" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35950" g_stop="35944" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="172" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34908" g_stop="34886" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="193" r_length="21" r_score="0.522"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="336" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="435" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32976" g_stop="32847" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="565" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E262493" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38335" e_stop="38172"/>
          <exon e_start="35950" e_stop="35944"/>
          <exon e_start="34908" e_stop="34886"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTC</genome_strand>
        <mrna_strand>AGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCGGCGG-CGGT-ATTAG..............................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCACATGTGGGGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334502" ref_strand="+" ref_description="SGN-E334502 [cTOD-23-H13]">
      <seq>cgaatgcggcgaccgcgatgaacgttgacaaggaacaatccgattgcaaccttccagaactttctccaccgtccatggagaaacctgcaccggagccggcgccggaaccgtcacagcaaccaccgagagagtctactgctccgacgccgtccatgacgcagattaaacagccgccgtctctgacgcaggtgaaacagccgccgtctctgacgcaggtgaaacagccgccgtctattgatcccagtgcgctctttagcggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatgaagaaaaaggccagcaaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgatagattgcttgtcgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38713" stop="32558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38413" g_stop="38172" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35950" g_stop="35944" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="250" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34908" g_stop="34886" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="271" r_length="21" r_score="0.522"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="414" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="513" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32976" g_stop="32858" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="632" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E334502" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38413" e_stop="38172"/>
          <exon e_start="35950" e_stop="35944"/>
          <exon e_start="34908" e_stop="34886"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAAT</genome_strand>
        <mrna_strand>CGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCGGCGG-CGGT-ATTAG..............................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442041" ref_strand="+" ref_description="SGN-E442041 [cSTA-31-F10]">
      <seq>aggaacaatccgatcgcaaccttccagaactttctccaccgtctatggagaaacctgcgccggcgccggcacccgaaccgtcacagcaaccaccaagagagtccactgctccgacgccgtccctgccgcagattaaacagccgctgtccctgccgctggtgaaacagccgccgtctctgacgcaggtgaaacagacgccgtctattgatcccagtgcgctctttagtggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacgaagtcagctatagttgaagcatttaagcagactgatgccgattaccttaatgaagaaaaaggccagcaaaaagatgccggttcaacagcgtcaactgctgttcttttaggtgataaattgcttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38683" stop="32564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38383" g_stop="38172" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221">
            <donor d_prob="0.000" d_score="0.85"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35950" g_stop="35944" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="220" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34908" g_stop="34886" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="241" r_length="21" r_score="0.522"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="384" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="483" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.622" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32976" g_stop="32864" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="596" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E442041" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38383" e_stop="38172"/>
          <exon e_start="35950" e_stop="35944"/>
          <exon e_start="34908" e_stop="34886"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTC</genome_strand>
        <mrna_strand>AGGAACAATCCGATCGCAACCTTCCAGAACTTTCTCCACCGTCTATGGAGAAACCTGCGCCGGCGCCGGCACCCGAACCGTCACAGCAACCACCAAGAGAGTCCACTGCTCCGACGCCGTCCCTGCCGCAGATTAAACAGCCGCTGTCCCTGCCGCTGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGACGCCGTCTATTGATCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGTGGCGG-CGGT-ATTAG..............................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACGAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGCCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAAATTGCTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447700" ref_strand="+" ref_description="SGN-E447700 [cSTS-1-I9]">
      <seq>aaaaaccgaatgcggcgaccgcgatgaacgttgacaaggaacaatccgatcgcaaccttccagaactttctccaccgtctactggagaaacctgcgccggcgccggcacccgaaccgtcacagcaaccaccaagagagtccactgctccgacgccgtccctgccgcagattaaacagccgccatccctgccgctggtgaaacagccgccgtctctgacgcaggtgaaacagacgccgtctattgatcccagtgcgctctttagtggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttnttggtgtttttgatggtcatgggtggttcaagaacagcattatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacgaagtcagctatagttgaatcatttaagcagactgatgccgattaccttaatgaagaaaaaggccagcaaaaagatgccggttcaacagcgtcaactgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38719" stop="32589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38419" g_stop="38172" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221">
            <donor d_prob="0.000" d_score="0.85"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35950" g_stop="35944" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="257" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34908" g_stop="34886" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="278" r_length="21" r_score="0.522"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="422" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="522" r_length="100" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.622" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32976" g_stop="32889" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="610" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E447700" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38419" e_stop="38172"/>
          <exon e_start="35950" e_stop="35944"/>
          <exon e_start="34908" e_stop="34886"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCA-TGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTT-TTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCAT-GGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGT</genome_strand>
        <mrna_strand>AAAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATCGCAACCTTCCAGAACTTTCTCCACCGTCTACTGGAGAAACCTGCGCCGGCGCCGGCACCCGAACCGTCACAGCAACCACCAAGAGAGTCCACTGCTCCGACGCCGTCCCTGCCGCAGATTAAACAGCCGCCATCCCTGCCGCTGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGACGCCGTCTATTGATCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGTGGCGG-CGGT-ATTAG..............................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTNTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGGTGGTTCAAGAACAGCATTATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACGAAGTCAGCTATAG...........................................................................................TTGAATCATTTAAGCAGACTGATGCCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442046" ref_strand="+" ref_description="SGN-E442046 [cSTA-31-F22]">
      <seq>aggaacaatccgatcgcaaccttccagaactttctccaccgtctatggagaaacctgcgccggcgccggcacccgaaccgtcacagcaaccaccaagagagtccactgctccgacgccgtccctgccgcagattaaacagccgctgtccctgccgctggtgaaacagccgccgtctctgacgcaggtgaaacagacgccgtctattgatcccagtgcgctctttagtggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacgaagtcagctatagttgaagcatttaagcagactgatgccgattaccttaatgaagaaaaaggccagcaaaaagatgccggttcaacagcgtcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38683" stop="32594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38383" g_stop="38172" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221">
            <donor d_prob="0.000" d_score="0.85"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35950" g_stop="35944" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="220" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34908" g_stop="34886" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="241" r_length="21" r_score="0.522"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="384" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="483" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.622" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32976" g_stop="32894" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="566" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E442046" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38383" e_stop="38172"/>
          <exon e_start="35950" e_stop="35944"/>
          <exon e_start="34908" e_stop="34886"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACT</genome_strand>
        <mrna_strand>AGGAACAATCCGATCGCAACCTTCCAGAACTTTCTCCACCGTCTATGGAGAAACCTGCGCCGGCGCCGGCACCCGAACCGTCACAGCAACCACCAAGAGAGTCCACTGCTCCGACGCCGTCCCTGCCGCAGATTAAACAGCCGCTGTCCCTGCCGCTGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGACGCCGTCTATTGATCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGTGGCGG-CGGT-ATTAG..............................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACGAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGCCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250504" ref_strand="+" ref_description="SGN-E250504 [cLEG-18-I9]">
      <seq>gcggcgaccgcgatgaacgttgacaaggaacaatccgattgcaaccttccagaactttctccaccgtccatggagaaacctgcaccggagccggcgccggaaccgtcacagcaaccaccgagagagtctactgctccgacgccgtccatgacgcagattaaacagccgccgtctctgacgcaagtgaaacagccgccgtctctgacgcaggtgaaacagccgccgtctattgatcccagtgcgctctttatcggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatctgagtagtcatcctgattatatcaaagatacacagtcagctatagttgaagcatttaagcagactgatgtcgattaccttaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38708" stop="32637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38408" g_stop="38172" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="36752" i_length="1420">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.178" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36751" g_stop="36724" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="266" r_length="27" r_score="0.571"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36723" i_stop="34664" i_length="2060">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="409" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="508" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.622" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32976" g_stop="32937" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="548" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E250504" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38408" e_stop="38172"/>
          <exon e_start="36751" e_stop="36724"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGC-TCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGA</genome_strand>
        <mrna_strand>GCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAAGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-C-GCTCTTTATCGGCGGCGGTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATCTGAGTAGTCATCCTGATTATATCAAAGATACACAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262397" ref_strand="+" ref_description="SGN-E262397 [cLEG-56-A10]">
      <seq>agaaacctgcaccggagccggcgccggaaccgtcacagcaaccaccgagagagtctactgctccgacgccgtccatgacgcagattaaacagccgccgtctctgacgcaggtgaaacagccgccgtctctgacgcaggtgaaacagccgccgtctattgatcccagtgcgctctttagcggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcnagaacagnanaatacttagagaaaaacctctttaagaatttgagtagtcgtcctgattttatcaaagatacaaagtcagctatagttggagcatttaagcagactgatgtcgattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38635" stop="32644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38335" g_stop="38172" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35950" g_stop="35944" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="172" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34908" g_stop="34886" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="193" r_length="21" r_score="0.522"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="336" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="435" r_length="99" r_score="0.939"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.622" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32976" g_stop="32944" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="468" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E262397" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38335" e_stop="38172"/>
          <exon e_start="35950" e_stop="35944"/>
          <exon e_start="34908" e_stop="34886"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATGTCGATTACC</genome_strand>
        <mrna_strand>AGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCGGCGG-CGGT-ATTAG..............................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCNAGAACAGNANAATACTTAGAGAAAAACCTCTTTAAGAATTTGAGTAGTCGTCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGGAGCATTTAAGCAGACTGATGTCGATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209152" ref_strand="+" ref_description="SGN-E209152 [cLEC-38-B11]">
      <seq>cgattgcaaccttccagaactttctccaccgtccatggagaaacctgcaccggagccggcgccggaaccgtcacagcaaccaccgagagagtctactgctccgacgccgtccatgacgcagattaaacagccgccgtctctgacgcaggtgaaacagccgccgtctctgacgcaggtgaaacagccgccgtctattgatcccagtgcgctctttagcggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattntatcaaagatacaaagtcagctatagttgaagcatttaagcagactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38673" stop="32653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38373" g_stop="38172" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35950" g_stop="35944" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="210" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34908" g_stop="34886" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="231" r_length="21" r_score="0.522"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="374" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="473" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.622" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32976" g_stop="32953" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="497" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E209152" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38373" e_stop="38172"/>
          <exon e_start="35950" e_stop="35944"/>
          <exon e_start="34908" e_stop="34886"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATTTAAGCAGACTGATG</genome_strand>
        <mrna_strand>CGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCGGCGG-CGGT-ATTAG..............................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTNTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATTTAAGCAGACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285706" ref_strand="+" ref_description="SGN-E285706 [cLES-5-J14]">
      <seq>aaaaccgaatgcggcgaccgcgatgaacgttgacaaggaacaatccgattgcaaccttccagaactttctccaccgtccatggagaaacctgcaccggagccggcgccggaaccgtcacagcaaccaccgagagagtctactgctccgacgccgtccatgacgcagattaaacagccgccgtctctgacgcaggtgaaacagccgccgtctctgacgcaggtgaaacagccgccgtctctgacgcaggtgaaacagccgccgtctattgatcccagtgcgctctttagcggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcagaagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtgggtcaagaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagctatagttgaagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38718" stop="32758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38418" g_stop="38116" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38115" i_stop="34664" i_length="3452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="446" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33166" g_stop="33068" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="545" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.622" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32976" g_stop="32967" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="555" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E285706" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38418" e_stop="38116"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33068"/>
          <exon e_start="32976" e_stop="32967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAGGTATGAACCAAAGCAGAGCTCTATGTCATTTCTAGTTTCATTGTATCTTCTCTCTTCTGTATCATTTAATTGGAAAAGCTCTTGAGTGCAGTTGAAGCATT</genome_strand>
        <mrna_strand>AAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGGTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG...........................................................................................TTGAAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267199" ref_strand="+" ref_description="SGN-E267199 [cLEI-4-G22]">
      <seq>tttttcgcacatatgaaaaagtaaaaaaaccgaatgcggcgaccgcgatgaacgttgacaaggaacaatccgattgcaaccttccagaactttctccaccgtccatggagaaacctgcaccggagccggcgccggaaccgtcacagcaaccaccgagagagtctactgctccgacgccgtccatgacgcagattaaacagccgccgtctctgacgcaggtgaaacagccgccgtctctgacgcaggtgaaacagccgccgtctattgatcccagtgcgctctttagcggcggcggtattagctttctgactggaaacaaaaatgctaaattcagctatggatatgctacttttaaggggaaacgggcctccatggaggactactatgagacaagcatatcataagttgatggtcaaatggtggcattttttggtgtttttgatggtcatggtggttcatgaacagcagaatacttaaagaacaacctctttaagaatttgagtagtcatcctgattttatcaaagatacaaagtcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38743" stop="32773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38443" g_stop="38172" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35950" g_stop="35944" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="280" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34908" g_stop="34886" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="301" r_length="21" r_score="0.522"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="444" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33166" g_stop="33073" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="538" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E267199" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38443" e_stop="38172"/>
          <exon e_start="35950" e_stop="35944"/>
          <exon e_start="34908" e_stop="34886"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCGCACATATGAAAAAGTAAAAAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGC</genome_strand>
        <mrna_strand>TTTTTCGCACATATGAAAAAGTAAAAAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCGGCGG-CGGT-ATTAG..............................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCATAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCATGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266654" ref_strand="+" ref_description="SGN-E266654 [cLEI-5-I18]">
      <seq>taaaaaaactgaatgcggcgaccgtgatgaacgttgacaaggaacaatccgattgcaaccttccagaactttctccaccgtccatggagaaacctgcaccggagccggcgccggaaccgtcacagcaaccaccgagagagtctactgctccgacgccgtccatgacgcagattaaacagccgccgtctctgacgcaggtgaaacagccgccgtctctgacgcaggtgaaacagccgtcgtatattgatcccagtgcgctctttagcggcggcggtattagctttctgactggaaacaaaaatgctaaatgcacctatggatatgctacttttaaggggaaacgggcctgcatggaggactactatgagacaagcatatcagaagtcgatggtcaaatggaggcattttttggtgttcttgatggtcatggtggttcaagaacagcagaatacttaaagaacaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="38722" stop="32825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38422" g_stop="38172" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221">
            <donor d_prob="0.000" d_score="0.83"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35950" g_stop="35944" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="259" r_length="6" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34908" g_stop="34886" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="280" r_length="21" r_score="0.522"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222">
            <donor d_prob="0.128" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34663" g_stop="34521" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="423" r_length="143" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354">
            <donor d_prob="0.905" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33166" g_stop="33125" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="465" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E266654" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38422" e_stop="38172"/>
          <exon e_start="35950" e_stop="35944"/>
          <exon e_start="34908" e_stop="34886"/>
          <exon e_start="34663" e_stop="34521"/>
          <exon e_start="33166" e_stop="33125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCT-CTGA-CGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAGGTAACTGCATTATTGGTCTCTTGCTTAATTTTATTGTTTTCTGCTGAATTTATTAACTGTTTGTTGTTATCAATGTTTATGTTTCGAGAAATGATCAATTTTATTTGATTCCTTTTTCTAGCATTAGAAATGAGAATGACAGTTCGCAGTTGCTATTTCTACTTGACATCATGGTTTAGTAAAAGGTTTTGTTACAATTTTTTCCGTAGCTAGTCTTTGTTTTACAAAGATGGGTAGTATTTACAAAGGAATAGTACATAAACATTACCCTCAACTTGACATCAACGGACAATTATGACCTCTAATTTTGGAGGTGCACAAGTAGAGACTTAAATTTGTACAAAATTGAGCAAATGGACACATTTGTCCTACATGACACCCTACATGAAAATTTTGTGTCCTATGTGTATTATGCCATGCAGAACAAGAGTATCTACTTGTGCATACTCAAAGTTGGAGGACATAGTTGTCCGTTGCAGCCAAGTTAAGGGTTACGTTTATGAATTATGTTATTTACAAACGTGTAATATGATCATATAAAAGAGGCATCCCAAAAGTCTTGCACAATTTGCTAGAATTAAAGAGAGCACTAAGCAATGGTCTCTGTACCCTCCAGGAATGAGGAAGCCCCAAAACCGCAAAAGGAGAAGTCATCCTAATCTTCTTTTTCTTCACACCCACTTTGTTCAACCTTTAGCTTTCCGTTGTTCCTGGCTTCCTGCAACTATTTTAGGAAGTACCTATTGGTTGTTGAAAGTTACAAAATTCAAAGACCACAATTCCAAAGATGCAGTAAGAGATGATTCACATCCTCCCCATGTTTGGTACACATACAACTCCAATTCGTGATGATGCATCTACTCCTTAAATTATCTACCATTAAGAGAGGCTCCCCATGCAACACAACATGTGACAAATATCTCTTCTTTTGGTGCATCTGATAGGAGACTCCCACACGAGATAATGATCCGTCGTAAACAAGTGGTAACACGACGTAACAGAGATGTACTTCTATTACCAGCTTTTTCCATATCAAAAGTAGCTCCATATCACATAATATCATTACTGTAATCTTCATGTGCTTATCGAATTTGAATGAGCTTGGCTTTTTTTTTTTTTAGGCTAATGATGGTTGTGTCTAGTGTTATCAAAGGCAAAAAGCGCAAAAAAGCTTTAGGGTCCATCGGGGCTTTAAGCGCAAAGCGCAAATAAAGCGTGGACTTTAATGAAAAAAGGTGCAAAGGGAGGAAAAAATATAAATATATATGTTTAGTCCAGGACTATAAATTATAAACATGAATGATAAATACATGACCAAGGAAATTGAATTTTTTTAATTATAAAGTGAAATATCAACTATTTAGTGTCAGTTCTTCATAAGAGGCTCATTGGCAAGGAAAAGTTTGCCTTAGAACCTTGATGACGACACTGAACCGCAAATAAAGCGAGGTGAAGCGTTCAATACGTTTTGAGTCTCGCTTCAGGGCTTAAGTGCGCTTAAAGCGCGCCTTTGATAACACTGGTTATGTCTGGGCCAACGTGTTGAGAAATGTGAATTAGTTGGTGAATTTACATTTAAAGTTATTATTACCACATCATACATGATCCAGGAATATGTTCTATATCCCAATGGCGTAGCAAGATTTTTGTGAGGGGTATCACCTTTTAAAATGAACAATAAATAAAATTATGTGACTTCATATTGAAAAAAAGGAACAAAATATAAATAAAATACAGTTCGGGCTCAGTACTATACATTTTCTAAAAAGAAGTACTTTTAAAAAATTAATAAAAACATTCACGTGTCTTTTTTTATTTTGAAATATATTCAAAATAACTTTTAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCTCCCCCACATAAAAAATTAATAATATTAAATGCTTCATAAATTGTTTTTAATTAATTTACTGATTAGAAAGATGGTGAAAGTAACCCCCCCCCCCCCCTCCACATAAAAAATAAGCCTATAAGAAGAGTGAAAGAAGAACTTCAAATGTATAAAAAAAATGACAAGTGCTTGATTCAAACACAAGACCTATACCTTAGAACTAAGGCGCCTGACCAGCTAAGCTAAGTGTGTGTATGTGTCTAGGAGTGTCACTGTATATAACATATTCAGTGTTTCTCCTTTTTCTTTTAGTTATGTATATTAACTAAATTTTTCAGTTGAAGCAGTGTCACATGACACCCTTTGGACTTACGTAGATCTGCCCCTGCTATATCGCTTTAAACCTAGGAACCAATGAACTCAAAGAGTCTTTTTTATGGCTAATGGTGGTAGTTTTCAGGCCAGCTTGTTGGAAAATGTGAATTAGTTGGTGTATTTACATTTCAAGCTTTATATCACACCATACACGGCAAGAAATATGTTCTATCCCCCCTTCAAACCTAGGAACCAATGCACTCAAAAGAGTTTGATCTTATTTCATTTCAATACCCCTCTCCACAAACTCATTCTATAAGGGCGTTTTCAGTGAATCAACCATAATGACAGACTGATGCCATATTTCAGCAGAATCCCCTTCCTGCACATGACCTGTTCTTCTACTGGAAATCTCCATAAATGCCCAACAATGTCTAATGAAAAGTTCCAACCTTGGGATGGCTAATCTCACGATCTTCAAGACATCTTTTTGGACAGTTTCGAAATATAATTCCACTGTTTAGTTTTACAATCTTGTGCTAATCGATGCCGAAGTGAACAAGGACCAAATAAAGTAGGATGCTTAAAATGGCAGCATATAGAAAATGGATCAATGGCGTCATGGAAGAGTTTAGAGGCTCTTCTAACATTACAGTCTCACACATTATATGGAGACCCTTGCAGGGGCGGAGCAAGTGTAGGACGATGTTGGCAAATGATTGTTGAATAGAGTTACTCACCTCGCAACCTAATTTCCTCTATGAGCTTGGCGGGACCCAGTAACTTTGGCATCAAACAGTTTATGTTTAAAATTTCATTTAATATGTACAACACAATCTATTGAGAACCTAGTAAGCAAAAAAAATTGTTATTCCTTATAAGCTAAAAATCCTGTCTCTGCTAATCCTTGTTCTAAGTGATGCTTATGTTTCTCAACACATCCAGATGGTATGAATACTGCAAAATATGCTCTACTGTGGGGTACCTTGTGTAGCTTAAGAGTTGGTCATTGGGCAGGTTAAGTCTTGAATTTCAGCCTGGTTGCTGTTTTTGGTTGTGGATATTTGCATCCATATTTGGACTGATAAATGCATTTCTTTTGTTCGGATCTGTTTATTTTTAATACGACTGTATCTTCATAGTGGGGAGAAACAATTAATGTAATCCTACATTTGTAAAGATATGTTTGGGGATGAACTTTTATAAGAAACCAACTGATTTCTTTTTCTTTTCTTGAAGCTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATGGTATTTCCTAGAATTTCTTGCATATCTTGTCAGGATGATGTTTCTTTTTTGTAATTAAAGTATTACTACCAAATCGGAAAATTACAGCTCAAACAAAAAAAGAAGAGATTCAAGATTGGACATGCATGTCCATTCTTTTGCTAAGCTACTTTTCATCACCAACTCAGTACTTTAGTAGTATTTATTGCTTATACATCAAGGGTAGTAGTTTAGATCTTGCAATATCCTAGGTACTATGGAACACTAATCTGTCTAACTGTTGCTGCTGTTATTCTTCTTATATTCTGAAACACCCCGTGTTCTTTCCATACATAGTATACTGCTGCAGCCAATTTCGTCTTAAAGATTTCTGCTTGGCTACTCTTTCCTTTATAGTAGGTTACAGCCACCTTATCTCCTCTTGCCATCCATATCTCTTTGCATTTTTTGCCAACGTAACAATTTTAACCATATACTAGAACTTTCAGGACATTGGAAGAGCAAGTGCTGGATACTTTCAGCTTCATTACATAGGGGACATTTGAGGCTAACATTTATTTCCCACTTTACAAGTTAGTAGCCAGCCCTCCAGTATTGCCAGTCTTAGTATAAATATCCATTTTGTAGAACCTCAGTTGTTACATACCAATCTTGTCCAGTCTACTTCTTGGAAGATGCCTTGTAAATTTCTGTATATTGCTTGAATGGATATGCTATCCATTTGCATGAGTTCAGTCAATGTGCAACTTTCCCCCAAAATGTTAATAAAACTATTTACCATATGTCCATATAAAAAAAAAATTATATATATATATATATACTTATTGGATTTGAGTATCTTCCTAGTCATCCATGCAGCCTGTTTTAATTCAATTTGCCAAATAGTTCTCACTTTCCCATAGTAGATGTGCATCCATTTTACCCCTGGGTTGTCCTTCCTTTTGCAAATATTGCATAGGAGTTCACATATTGCAGCTCTATTCCAGATCATGATGTTGATAATGTTCAAGCCTCCAGCTGATTGAGGTTGATAGAGATTTTCCCATGCCACTGGTGGCTTCATAGAAATTTAGCTTTTCTAGTCTTCACATATCTTTTACATATGTTCTCTATCTTCTTATGGAGTATAAACATTTGTCCCAGAATGTTCATTGATAAAATGACGCTCTTTATGAGCTGAGCTCTTCCAACATATGACAGGAACTTAGAAGGATGGGCGTTTTCTACTTTCAGAGTGTTAATCTTGTTTAAATATCATTTTAGTTGTTGTAGATACGAAATTTACTCACGAAGAGACTTTTTTTTGGGTACTCTTGAATTGAGTTTCTTTGCAACCTAGATGATTATTTATCCCTTATACTCTGCTTGGTGTTAGGTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACC</genome_strand>
        <mrna_strand>TAAAAAAACTGAATGCGGCGACCGTGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGTCGTATATTGATCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCGGCGG-CGGT-ATTAG..............................................................................................................................................................................................................................CTTTCTGACTGGAAACAAAAATGCTAAATGCACCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTGCATGGAGGACTACTATGAGACAAGCATATCAGAAGTCGATGGTCAAATGGAGGCATTTTTTGGTGTTCTTGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746593" ref_strand="+" ref_description="SGN-E746593 [GI|47104157]">
      <seq>aaaaatttgacatgcattctgccctgtagtagatctgaatatcaatctccattacagtgccactcataactccgaaaaaactcgcttcaataaaacccaaatcttcaattcaacctaattcttcgatttcccacttttgggtgccacaatatactgttactgaagaagtcactgtaccgcagatttactcgaaattatttgtattcagtagtcgccggaaaaatgagacggaggaactcggatttccggcggccggtgaggcggcgattttccaatgttttttggttaactttgtgtggattggtcgtattgctgctcattattttgctcagcagaacaactcgcgattcatcgtctagattggtttatacaaagagaccctataggcatgacagaattgcggatggtctcaacatcactgaagaaatgctgaggcctgaatcgatgacaagacaaattaatgatcagatttctcttgcaaaagcaattcttgtaattgcaaaagaaagcaacaatcttcaatttgcatgggaactaagtgctcaaatccgcaactcacagatgcttctttctaatgctgcttcaagaagaagccccttgacaaacggagaatcagaaagtgtaattcgagatatggcacttctactctaccaagcccagcaacttcactatgacagtgcaaccatgtttatgagactgaaagctaaaatccaaagccttgaagaacaggcgaattcctttagtgagaagagttcaaaatatggacaaattgctgctgaagaagtccctaaaagtctctattgccttggtgtccggttaacagctgaatggttcagaagttccaatttgcagaaacaactcaaggaagaaaagcaagcagctgtcaaacttgtggacactggtttgtatcatttctgtgtattctcagacaacatccttgcaacttcggttgtggtgaattcaacggctatgaattccaagaatcctgatatggtggtcttccaccttgtaacagatgaggtgaactatgctgccatgaaggcatggttcaccatgaacagtttccgaggagtgactgttgttgtacaaaagattgaagagtttagttggttaaatgcttcgtatgtacctgttctaaaacaacttcaagactctgacacccagaactactacttttctggcaaccatgataacagccgtactccgatcaaattcagaaaccctaaatatctatcaatgcttaaccatctgagattctatattccagaagtttttcctgcacttaagaaggttgtgtttctcgatgatgatgttgtagtgcagaaggatctttcagccctattcaccacagatttgaatggcaatgtaaatggtgcagtggagacttgtatggagacattccatagatatcacaagtacctaaattattctcacccacttattcgtcaacattttgatcctgatgcatgtgggtgggccttcgggatgaatgttttcgatttggttgagtggcgaaaaaggaacgttactggcatataccattactggcaggacaagaacgtggaccgcacattgtggaagcttggcactttaccacctggactgctgaccttctatggattaacagaggctttgaatccttcatggcatgtcttaggttttggttacacgaatgtcgattccaaattgatagaaaagggagctgtgctgcacttcaatggtaactcaaaaccctggttgaagattggtattgagaagtacaagccactctgggacaaatatgttgattatagtcatcctttattacaacaatgcaattttcactaagttgtctttagttaatttaatcttatatagttctcacagaggtggtaattttgggaatctgtaaggggttctgtgagattaagatattgtcatctcttgtgcttattccaatttgttgtagtatagcttttgaaacaaacatcaaggcaccaccagtatcttattacataaaatttcatgttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="44161" stop="53640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44312" g_stop="44325" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44326" i_stop="44465" i_length="140">
            <donor d_prob="0.484" d_score="0.00"/>
            <acceptor a_prob="0.514" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44466" g_stop="44826" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="375" r_length="361" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51706" g_stop="53309" g_length="1604"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="1979" r_length="1604" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2011" polyA_stop="2025"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E746593" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1979</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44312" e_stop="44325"/>
          <exon e_start="44466" e_stop="44826"/>
          <exon e_start="51706" e_stop="53309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATATGAAATGGCATGTATAAAAATTTAATAGTTAGAAGAAAATAAAATTTATAAAAATCACTATAAAATCTAAAACAAATTTTAAGACAATATAACACAATCAAATTTCACAGTTATTTTTTCTGGTCCTCAAGAAAATTTGACATGCAGCATTCTGCCCTGTTGTAGATCTGAATATCAATCTCCATTACAGTGCCACTCATAACTCCGAAAAAACTCGCTTCAATAAAACCCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAGGTAATGTTCGTTTTCGTTGTATTATAAATTGCTGTTGTTTTCTGTTTCTAAGCTAAATATTCTTTTTTAAGCTAGATGAGTTTGTGTGGGTTGTGGAATTTGAGCTTTGCGGGTTAGTCAATTACTTGTTAATGTATTTGACATGGACAAACTGAAATGATTGTTGACATTTGCGATCTAACAGTTTGCAGTAGTATGCAATCAGTCTAAGAGTTAACTCTGAATTTCCATTTTAGAGTTCTTGTCAAAATTTACACAGATCCAAACTCACTATCTCATAAACCATAGACTAAAGCTGAATTGTAGATAAAAAATAAGCGAAACTCAATAAGGGAAGTCTGTGCAATGTGAGCTCTAGGTTTATGAACTTTACAAGGCTATATGCTTACACTTGTGTGTGCTATTCACAGAATCTACTAACAAACTATTTTTAGTTAACTACTGGCTAGCCTCCTTATAACAAAGTAACTGGCCATTAAACAATAATTAATCACCTAACTACAAGCTAACTACAACAACAACCAAAGTTAAGTTGCACCACTGTCAATAGTCTCTACCTTTTGTTTTAGATCCTTATTTAGATAGATTTTGATTTTTAATCCAAGTGTTAGCCTTTCCTTTCAATATTATCTCTTAGGTGAGTGTACAACCAATTCACTAAATCTAGTTAATATGTTGTACAGTCGTTAGGTGTAATTTTCATTGCATTTATTGGTTAATAATGGTCATTTTGGTTTGAGAATTGGCAACTAAGGCACATACAGATCTTTTGAAACAAAAAGGGCAAGTTGGAAATTTCTGAAACTTCTTATGAAATTATTTCTATGTCCAAAAGCAGTTTATGCCCGGTTTAATTATTGTTATCCTTTTAAACAGCTAAAAGTACTATGAAGCTTTCTTTCTTTCAAAGATATGTTCCAAGTGAATTTAAAGTAATTGTTTCTTGTCGAAGAACACCTAATTCTTTGAGAATATGTATCAAACTTTTCACCTATTTGGTAATGGCCCATTCCCAGGTCCTTGATCACCGGTATTTTGTTTCCCGACAACAAACTTCTAAAGGATAATTGTAGTCAACTTTTTTTTCCTATTACTTATGGATATTATTGCTATGGGGTAAGTGTCAATAAGTACATTGCTCGACAAATGTCACAAGATCTCCACTGTGCATTGATTAATCAGAAGAGATTATGACTACATTTAGCATTTTGGAGTGAGTCTATAGCTGGGCTTGTGAAATAATTTGACGTTTTTTGGTTACCATGAGCAGTAGTTATTGATTTTGGAAAAATACTTTAATGCTAAAAGAAATCTTGTACAGTAGTAACAGTGTCTGAAAGTATCTGGGCTACTTTGGGGCCTGGAACTAATATCTTTATTTTTTTGGGATTAGGCTATCAAGATGAAATTCATGGTATTGATGGATAAACAAATTTGGTCAAATTAAAGAAACAAAAAGATAGGTTTATTCTTGTTTATGACTTGAGGGTATCGTGAAGATCTGTCATATTAATGCCCTCAGCCTCAAGTAAATCTGCTTCAAAGATGATAAAGATAGCAAATAGAAAAGGAAAAGTTAAGCATCCGAGTCTAAGACATGGAAGAATACCGTAGTCCCTTCCTCCCAAATTTAAGCTTTTGGGAACATTGAGGTGTCCACACTTGGTGGGAAGTTCATAAACTGATCATTTCATATTACACTACCCCATGTCTTATGAAAGAATTAAATGAAACCAAGAGAAATCTGATCAACATGTAGTTTATTGTGGCCTCCACATTTTTCTAGTTTAGCATTAAACAATGTGGTACAATTTGATTATTGTTCAAGTACCTCCATCAAGCTGTGGCAGTCAAAGACAAAGTACAGAGTGGCTCGATCTAGAAGCGTCTTAATAAAAGCCTAGATATTCTTCACGGAATTAACAAAATCAATAGAATACAAAGTATGTATAAAGAAAATAGGTTCCATATAAGTTATGCTGGGAGTTGGGAAAACTTAAAAATTATTTAGGGGCACATGGAAGTAATTAATAGATGAAGGACATAAAAAATATCAATTATACAAGACATACCATAGTTACTTGTCTTCCTTGTGGTCTACGTTGTAATTTGCTAATCTTATTGAATGTCTCAAAGGAACCAAGAATGCAGGGTACCCTTTTCGAAAATTAAGAATGTAGAGTTACATAATATATATTTTAGAAGCAATCAATGTAAAATTGTACCCCTCTGTCCCAATTTGTGAGACACACTAATTTTTTTAGTTTGTCCCAAAAAAGAATGTCACTTTTTATAGCAAAAATAACTTAACATTGAAATTCCCCTTTTACCCTTAATGAAATAATTTATTGCCACACAAATATCTAAGATTTATTTTGGATCACAAATTTTATAAGTCACCTTTCTTTCTTAAACTTGTGTCAAGCCACGCGGTGCTACATAAATTGGGACGGAGGGAGTAAAACATAATTCCTACCTTAGAACATAGGTAATTGGAAAAGAATTCTTCTAACAAATTGAATAATTTATGTAAGCTGAGGACACAAATATTGCTTTTTGAGGTGATCCAGATAAAATGGGGAGGTTTCTGTTATCTGTAGATAACAATGTGGTTCTAAGAGTAGCTGAAAACACTCTGGTATTACTCAACACAGATTTCACCTTTATTCTGGAGTGGTCAATATGGGAAGGTCAAAAAGATTCGGTGAAGTAGTTTTTTTTCTGCTTTTTGAATGATCTACGATATTTTTAAAAAGAAGATAGGAACAGTCTTGGTGGCAGAGGTGTATCCCAGAAGGGGTCACTCGGTTCACTTGAACCCATGCTTCCCTCCTGAAATCATATATAGTAGTGTTATATTTTTTTTAAAAATATTTAAATATAGATACGTGAACCCATAGTTGAAGTATCATACCATGCGATTATGGTTGGGTGCAACTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATTTCTCTTGTTTTATTTTCCTTTTAAAAATTGGATAACGCTTCTCTAAGTGGTTTGGATAGGTAAAAGTAATTTTGGATCTATAATTTTTAAATTCTAATTATTTTTAGTGATAAGAACCTAAATTTTAAACCGATCAACTTCATATCTTAGATCCAACTGTTCGTAATAGTGTACCCATTATCTCAAAATTCTGGATACGCCTCAGCAGTTGGTGGTTCAGCTCAACTGTACTTCACTCAACTTTCTCCCAAGCAAAAATTTGTTTCTCAAAAATAAAATAAAATCCAAGATTTGCTCTTACGTCATTATGAGTGGTTGACCCATGATTTAAAGACCACATTTGCATCATGCATTAATGTAGGATCTGTCATTGGATTTTTATAATAAGGAATTTTCAGTCAGTTGGTTGGTTCAAAATTAGATTCAGATTGGTGTAATAGATTTTGATATAAAAACCAACTGATTAACAGGCCAAAGTTATTTCATTCCATTAAGTTTTCTTCTCTTCATTTGATTATATTGAATAAAAGTAGAAGAAAATATTAGCAACAACATACCCGGTGAAATCCCAAAAAGCGGGGTCTTGTGAGGATAGCATGGGTAGAGTGTACGCTATCCTTACCACTACCTCGTGGAGGCAGAGAGACTATTTTTAAAAGACCCTTGGTCAAGTGCATCAACCCAAATAACAAAATAAGAAAGCAATGGAGAAAGAGGAACAAATAATAAGAAAAGCAGTGTAAAGTCTACAATACCAACAACAAAATTGTGTGATGATCGAAAATACAATAAACAACATAGGACAAGAACCACAAGGGCATGACTAGTCCTATGAAACACTGTAAAGTCTAAATCTTTATAAGGCAAGGCAACACTCTACCCTTACTAACCTTCTACCCTAATATGCTATCACCATTCCTTTCTGTCTAAGGTGATGTCCTCGGTAATATGAAGTTGCGGAATATCCTGACTACTCACCTCTCCTCGATACTTTTTCGGCTTACCCCTACCCCTGTGCGTATTCCTTACAATCAGCTCTCGCACCTCCTCTGTACTGGGGCGTCAGTGCAGTTTTTCTGCACATATCAAAACCATCTCAGTCTCCCTTTCCTCATTTTGCCCGTCACAGAGGCACACCCACCTTCTCCGGATTACCTCATCCTAATCTTGTCACTTTTAATATGCCCACACATTCATCTCTACATCGTCATCTTCAAAACATACATTTTTTGAATATGTGATTTCTTGACGGACCAACACTCAAACTCATACGACAAGGACGGTCTAATCACCACTTTGTAAAACTTATCTTTAAGTTTAGGTGGTACCTTCTTATCGCACAAGTCCAAAGGCAAGCCACTTTTTCATACATGCCGCTCCATTGTGATGTGTGACATCATCATCATGTCCCCACTACCCTGGAGGCAGACCCGAGGTATTTAAAATTCTCTCTTCGGAATAGACTGTGTGGCAAGCCTCACTTCCACATCCACTTCATCCAATGCAACACTGAAGTTACAATCCAAATATTCCGTTTGGTCCTGCTCAACCCGAACCCTTTAGACTTCAGATAAGTTAAATATAAATAACAATTAAAAAGTGTGCCTATCAGCCAGATAAGTTAGTGAAAAAACATAGATTAGTTTTGATATTTTTTTCTTATATTAAATATCCTTTATAGTATTTCCAATTTATGCTTAATACTTTTTATGTGTATCATATTTCAGAAATTGTAAATTTAAAACATCGAAGGCAAAATTAGCAAGCCATCACAGTTTGGAGTCATAATCAAATCAGAAGAAAATAAATACGTACTCAGTCACTAATTAAAATCACAAAAGAATTGTGCGTTGATTCAACTGAATTCATCACCTATGATTCTAAACTAGGGCTAAAGGAGAGTTGGTGGTATGAAAGAATGAATAAGAAAAGTAAAGAAAATTAAAAAGAAAAACTAAAGGCTTAAGAAAAAAAAAGAATAGGAAAAGGCTGGTAGCGTAAAACCCAGTAAAAAAAAAAATTAGAAGACCACCACCACCACCACAACAACAACATCAACTTACTCTGTGTAATTCCACAAGTGGGGTATGGGGAGAGTTAGGATGTACGCGGATGGTAAAAAAAAAGGAAAAAATAACAAGGAAGTCTGAAGTGGGAAAGTTAGGAGACTAGAGTCAAATTTACTTGAAGTAAAATTAAGTGCATTGAGGGGGATTTCAACTTTGGTTGCAAAGACGAGGACTTGCAAAAAGATTTCTCAACTAGACCACAACACATTCTGCACTTTCAGATGCCTTTGTTTTCATGTCTATTTCATGTTGATATTACATGTATATACAAAGTTTTTCTCAAAGTCTATTGGGAAGGTGGACAATGTAGGCCCCCCCTCTTGTCATTATGCCGGTTCATGTTTGCCAATGATAATTTTTTTCCTATTTGGGAAAGAAACAACAACATACTCCGTGAAACTTTTCTAGTTGGGAAAGTAAAGGATAAAAATAAAAGCAAAAGGTGTGTTGACACTTGAATATATTTTGGAGAATTTATTGGTTTTATGGCGACTGTTTTTGCAAAAATCTTTTCTATTCATATGGCCCTTGATCCAGCAAGGTACTTCTTATTTTCTTCTTACTCCTTTTTAAGCATTTCATCCGACAATTGATATTTATCCATTTATGCTTTTCTATTGCCCAATGCTGTGTTTGCTGCATAGATTCCATGCCATAATGTATTTGCCTAACTGAAGTCAGAGTAATAATTGGAAGAAAAAGCTGTTGGTGATGCTAGAAACTCAAATAGGCTCCCTGTTAGTGCTTAGTGTTTTTAAATGCAGAAACTACACCAGAATCCTGTGGAGCTTTAAGTACAAAGAGCAACTAAACGAGCGGTTTTAGTGAAGACACAAATTAAGGAAGAAACAGAGTTATGATGTAATACAAGCAGAACAACTGTAACAAAAAACAACAATTTTACACAATGGAATTGAAAAACTTCAAAACTTGACATGTAGGAAGTAAAAATCACGTCTATATGCCCTTATCAGAAAAAAATTAGTAAAAGAAAGCATGTCGATGTTAAGAAACCATTTTAAAATTATGTTTCCAGTTGCAGAAAATGAAATTTTTCTAATTTAAATATAGTGCTTGGTTTTCCTCTATATTTCCAATTCCAATTCTTTATCACTAATGTATTTAATTATGACTTTTATATAGAAATTAATAAGACACTTTACCAGCTGTATGCATTGTTTAGTGCTGCCTTAATTAGGTCAAGCTCTTGATTAACAAGACCCATATAAGCTAAGTTGTTCAGACTCTCCAAAAATGTCGGCCGCACCCGTGTCGGATCCTTCAAAAATACACTGTTTTTGGAGGATTTGACACACACTGGTCAACATTTTTGAAGAGTCCGAGCAACATAACATATAAGTGCTTTGGTTCCTGCAGTAGAACACCATGTGAGCAGGGGAATGCATGACCTGCACCTAGCTTTAGGGTTTAAATGCTCTGTAAATGAGCTCAACAACACTATTTGGTTTCTGAAAATCAAAAGTTAAGTGACATCTAGAATTTAGTAATAATTCCAAATTTGTAATACTGATGAGAGGATACATTCTACGGTGTTTTACACTATTTGAATCATACTGTGCTGTTAGCTTATGTGTAGTGGTAAGCTTGATTAAAGAAGTAGGGACTGGGCACAGGATTCCTTATTTACCTACCCAGACAACTACATATGTTTGGAAGAAGAATTTATTAACTCATTAGCTGACGCCTTTTGCAATGAAGACTTCCTCTCTAGTTGGCATTCTCATTTGAAGCTGCAATTTGTTTTTCCCTCTGTCTGACTGTCTCTTGTAAGCTTATGGAAAAATCGGAACCTTTACTCTTTTGTTTTTCTTTGCAGAGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTACTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAGACTGAAAGGTAAAATCCAAAGCCTTGAAGAACAGGCAAATTCCTTCAGTGAGAAGAGTTCAAAATATGGACAAATTGCTGCTGAAGAAGTCCCTAAAAGTCTCTATTGCCTTGGTGTCCGGTTAACAGCTGAATGGTTCAGAAGTTCCAATTTGCAGAAACAATTCAAGGAAGAAAAGCAAGCAGCTGCCAAACTTGTGGACACTGGTTTGTATCATTTCTGTGTATTCTCAGACAACATCCTTGCAACTTCGGTTGTGGTGAATTCAACGGCTATGAATTCCAAGAATCCTGATATGGTGGTCTTCCACCTTGTAACAGATGAGGTGAACTATGCTGCCATGAAGGCATGGTTCACCATGAACAGTTTCCGAGGAGTGACTGTTGTTGTACAAAAGATTGAAGAGTTTAGTTGGTTAAATGCTTCGTATGTACCTGTTCTAAAACAACTTCAAGACTCTGACACCCAGAACTACTACTTTTCTGGCAACCATGATAACAGCCGTACTCCGATCAAATTCAGAAACCCTAAATATCTATCAATGCTTAACCATCTGAGATTCTATATTCCAGAAGTTTTTCCTGCACTTAAGAAGGTTGTGTTTCTCGATGATGATGTTGTAGTGCAGAAGGATCTTTCAGCCCTATTCACCACAGATTTGAATGGAAATGTAAATGGTGCAGTGGAGACTTGTATGGAGACATTCCATAGATATCACAAGTACCTAAATTATTCTCACCCGCTTATTCGTCAACATTTTGATCCTGATGCATGTGGGTGGGCCTTCGGGATGAATGTTTTCGATTTGGTTGAGTGGCGCAAAAGGAATGTTACTGGCATATACCATTACTGGCAGGACAAGAACGTGGACCGCACATTGTGGAAGCTTGGTACTTTACCACCTGGATTGCTGACCTTCTATGGATTGACAGAGGCTTTGAATCCTTCATGGCATGTCTTAGGTTTTGGTTACACGAATGTCGACTCCAAATTGATAGAAAAGGGAGCTGTGCTGCACTTCAATGGTAACTCAAAACCCTGGTTGAAGATTGGTATTGAGAAGTACAAGCCACTCTGGGACAAATATGTTGATTATAGTCATCCTTTATTACAACAATGCAATTTTCACTAAGTTGTCTTTAATTAATTTAATCATATATAGTTCTCACAGAGGTGGTAATTTTGGGGATCTGTAATGGGTTCTGTGAGATTAAGATATTGTCATCTCTTGTGCTTATTCCAATTTGTTGTAGTATAGCTTTTGAAACAAACATCAAGGCACCA</genome_strand>
        <mrna_strand>AAAAATTTGACATG............................................................................................................................................CATTCTGCCCTGTAGTAGATCTGAATATCAATCTCCATTACAGTGCCACTCATAACTCCGAAAAAACTCGCTTCAATAAAACCCAAATCTTCAATTCAACCTAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTTACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTTTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCTATAGGCATGACAGAATTGCGGATGGTCTCAACATCACTGAAGAAATGCTGAGGCCTGAATCGATGACAAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAATCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGTAATTCGAGATATGGCACTTCTACTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAGACTGAAAGCTAAAATCCAAAGCCTTGAAGAACAGGCGAATTCCTTTAGTGAGAAGAGTTCAAAATATGGACAAATTGCTGCTGAAGAAGTCCCTAAAAGTCTCTATTGCCTTGGTGTCCGGTTAACAGCTGAATGGTTCAGAAGTTCCAATTTGCAGAAACAACTCAAGGAAGAAAAGCAAGCAGCTGTCAAACTTGTGGACACTGGTTTGTATCATTTCTGTGTATTCTCAGACAACATCCTTGCAACTTCGGTTGTGGTGAATTCAACGGCTATGAATTCCAAGAATCCTGATATGGTGGTCTTCCACCTTGTAACAGATGAGGTGAACTATGCTGCCATGAAGGCATGGTTCACCATGAACAGTTTCCGAGGAGTGACTGTTGTTGTACAAAAGATTGAAGAGTTTAGTTGGTTAAATGCTTCGTATGTACCTGTTCTAAAACAACTTCAAGACTCTGACACCCAGAACTACTACTTTTCTGGCAACCATGATAACAGCCGTACTCCGATCAAATTCAGAAACCCTAAATATCTATCAATGCTTAACCATCTGAGATTCTATATTCCAGAAGTTTTTCCTGCACTTAAGAAGGTTGTGTTTCTCGATGATGATGTTGTAGTGCAGAAGGATCTTTCAGCCCTATTCACCACAGATTTGAATGGCAATGTAAATGGTGCAGTGGAGACTTGTATGGAGACATTCCATAGATATCACAAGTACCTAAATTATTCTCACCCACTTATTCGTCAACATTTTGATCCTGATGCATGTGGGTGGGCCTTCGGGATGAATGTTTTCGATTTGGTTGAGTGGCGAAAAAGGAACGTTACTGGCATATACCATTACTGGCAGGACAAGAACGTGGACCGCACATTGTGGAAGCTTGGCACTTTACCACCTGGACTGCTGACCTTCTATGGATTAACAGAGGCTTTGAATCCTTCATGGCATGTCTTAGGTTTTGGTTACACGAATGTCGATTCCAAATTGATAGAAAAGGGAGCTGTGCTGCACTTCAATGGTAACTCAAAACCCTGGTTGAAGATTGGTATTGAGAAGTACAAGCCACTCTGGGACAAATATGTTGATTATAGTCATCCTTTATTACAACAATGCAATTTTCACTAAGTTGTCTTTAGTTAATTTAATCTTATATAGTTCTCACAGAGGTGGTAATTTTGGGAATCTGTAAGGGGTTCTGTGAGATTAAGATATTGTCATCTCTTGTGCTTATTCCAATTTGTTGTAGTATAGCTTTTGAAACAAACATCAAGGCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366374" ref_strand="+" ref_description="SGN-E366374 [cLPT-1-M5]">
      <seq>aaaaatttgacatgcattctgccctgtagtagatctgaatatcaatctccattacagtgccactcataactccgaaaaaactcgcttcaataaaacccaaatcttcaattcaacctaattcttcgatttcccacttttgggtgccacaatatactgttactgaagaagtcactgtaccgcagatttactcgaaattatttgtattcagtagtcgccggaaaaatgagacggaggaactcggatttccggcggccggtgaggcggcgattttccaatgttttttggttaactttgtgtggattggtcgtattgctgctcattattttgctcagcagaacaactcgcgattcatcgtctagattggtttatacaaagagaccctataggcatgacagaattgcggatggtctcaacatcactgaagaaatgctgaggcctgaatcgatgacaagacaaattaatgatcagatttctcttgcaaaagcaattcttgtaattgcaaaagaaagcaacaatcttcaatttgcatgggaactaagtgctcaaatccgcaactcacagatgcttctttctaatgctgcttcaagaagaagccccttgacaaacggagaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="44161" stop="52246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44312" g_stop="44325" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44326" i_stop="44465" i_length="140">
            <donor d_prob="0.484" d_score="0.00"/>
            <acceptor a_prob="0.514" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44466" g_stop="44826" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="375" r_length="361" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51706" g_stop="51946" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="616" r_length="241" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E366374" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44312" e_stop="44325"/>
          <exon e_start="44466" e_stop="44826"/>
          <exon e_start="51706" e_stop="51946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATATGAAATGGCATGTATAAAAATTTAATAGTTAGAAGAAAATAAAATTTATAAAAATCACTATAAAATCTAAAACAAATTTTAAGACAATATAACACAATCAAATTTCACAGTTATTTTTTCTGGTCCTCAAGAAAATTTGACATGCAGCATTCTGCCCTGTTGTAGATCTGAATATCAATCTCCATTACAGTGCCACTCATAACTCCGAAAAAACTCGCTTCAATAAAACCCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAGGTAATGTTCGTTTTCGTTGTATTATAAATTGCTGTTGTTTTCTGTTTCTAAGCTAAATATTCTTTTTTAAGCTAGATGAGTTTGTGTGGGTTGTGGAATTTGAGCTTTGCGGGTTAGTCAATTACTTGTTAATGTATTTGACATGGACAAACTGAAATGATTGTTGACATTTGCGATCTAACAGTTTGCAGTAGTATGCAATCAGTCTAAGAGTTAACTCTGAATTTCCATTTTAGAGTTCTTGTCAAAATTTACACAGATCCAAACTCACTATCTCATAAACCATAGACTAAAGCTGAATTGTAGATAAAAAATAAGCGAAACTCAATAAGGGAAGTCTGTGCAATGTGAGCTCTAGGTTTATGAACTTTACAAGGCTATATGCTTACACTTGTGTGTGCTATTCACAGAATCTACTAACAAACTATTTTTAGTTAACTACTGGCTAGCCTCCTTATAACAAAGTAACTGGCCATTAAACAATAATTAATCACCTAACTACAAGCTAACTACAACAACAACCAAAGTTAAGTTGCACCACTGTCAATAGTCTCTACCTTTTGTTTTAGATCCTTATTTAGATAGATTTTGATTTTTAATCCAAGTGTTAGCCTTTCCTTTCAATATTATCTCTTAGGTGAGTGTACAACCAATTCACTAAATCTAGTTAATATGTTGTACAGTCGTTAGGTGTAATTTTCATTGCATTTATTGGTTAATAATGGTCATTTTGGTTTGAGAATTGGCAACTAAGGCACATACAGATCTTTTGAAACAAAAAGGGCAAGTTGGAAATTTCTGAAACTTCTTATGAAATTATTTCTATGTCCAAAAGCAGTTTATGCCCGGTTTAATTATTGTTATCCTTTTAAACAGCTAAAAGTACTATGAAGCTTTCTTTCTTTCAAAGATATGTTCCAAGTGAATTTAAAGTAATTGTTTCTTGTCGAAGAACACCTAATTCTTTGAGAATATGTATCAAACTTTTCACCTATTTGGTAATGGCCCATTCCCAGGTCCTTGATCACCGGTATTTTGTTTCCCGACAACAAACTTCTAAAGGATAATTGTAGTCAACTTTTTTTTCCTATTACTTATGGATATTATTGCTATGGGGTAAGTGTCAATAAGTACATTGCTCGACAAATGTCACAAGATCTCCACTGTGCATTGATTAATCAGAAGAGATTATGACTACATTTAGCATTTTGGAGTGAGTCTATAGCTGGGCTTGTGAAATAATTTGACGTTTTTTGGTTACCATGAGCAGTAGTTATTGATTTTGGAAAAATACTTTAATGCTAAAAGAAATCTTGTACAGTAGTAACAGTGTCTGAAAGTATCTGGGCTACTTTGGGGCCTGGAACTAATATCTTTATTTTTTTGGGATTAGGCTATCAAGATGAAATTCATGGTATTGATGGATAAACAAATTTGGTCAAATTAAAGAAACAAAAAGATAGGTTTATTCTTGTTTATGACTTGAGGGTATCGTGAAGATCTGTCATATTAATGCCCTCAGCCTCAAGTAAATCTGCTTCAAAGATGATAAAGATAGCAAATAGAAAAGGAAAAGTTAAGCATCCGAGTCTAAGACATGGAAGAATACCGTAGTCCCTTCCTCCCAAATTTAAGCTTTTGGGAACATTGAGGTGTCCACACTTGGTGGGAAGTTCATAAACTGATCATTTCATATTACACTACCCCATGTCTTATGAAAGAATTAAATGAAACCAAGAGAAATCTGATCAACATGTAGTTTATTGTGGCCTCCACATTTTTCTAGTTTAGCATTAAACAATGTGGTACAATTTGATTATTGTTCAAGTACCTCCATCAAGCTGTGGCAGTCAAAGACAAAGTACAGAGTGGCTCGATCTAGAAGCGTCTTAATAAAAGCCTAGATATTCTTCACGGAATTAACAAAATCAATAGAATACAAAGTATGTATAAAGAAAATAGGTTCCATATAAGTTATGCTGGGAGTTGGGAAAACTTAAAAATTATTTAGGGGCACATGGAAGTAATTAATAGATGAAGGACATAAAAAATATCAATTATACAAGACATACCATAGTTACTTGTCTTCCTTGTGGTCTACGTTGTAATTTGCTAATCTTATTGAATGTCTCAAAGGAACCAAGAATGCAGGGTACCCTTTTCGAAAATTAAGAATGTAGAGTTACATAATATATATTTTAGAAGCAATCAATGTAAAATTGTACCCCTCTGTCCCAATTTGTGAGACACACTAATTTTTTTAGTTTGTCCCAAAAAAGAATGTCACTTTTTATAGCAAAAATAACTTAACATTGAAATTCCCCTTTTACCCTTAATGAAATAATTTATTGCCACACAAATATCTAAGATTTATTTTGGATCACAAATTTTATAAGTCACCTTTCTTTCTTAAACTTGTGTCAAGCCACGCGGTGCTACATAAATTGGGACGGAGGGAGTAAAACATAATTCCTACCTTAGAACATAGGTAATTGGAAAAGAATTCTTCTAACAAATTGAATAATTTATGTAAGCTGAGGACACAAATATTGCTTTTTGAGGTGATCCAGATAAAATGGGGAGGTTTCTGTTATCTGTAGATAACAATGTGGTTCTAAGAGTAGCTGAAAACACTCTGGTATTACTCAACACAGATTTCACCTTTATTCTGGAGTGGTCAATATGGGAAGGTCAAAAAGATTCGGTGAAGTAGTTTTTTTTCTGCTTTTTGAATGATCTACGATATTTTTAAAAAGAAGATAGGAACAGTCTTGGTGGCAGAGGTGTATCCCAGAAGGGGTCACTCGGTTCACTTGAACCCATGCTTCCCTCCTGAAATCATATATAGTAGTGTTATATTTTTTTTAAAAATATTTAAATATAGATACGTGAACCCATAGTTGAAGTATCATACCATGCGATTATGGTTGGGTGCAACTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATTTCTCTTGTTTTATTTTCCTTTTAAAAATTGGATAACGCTTCTCTAAGTGGTTTGGATAGGTAAAAGTAATTTTGGATCTATAATTTTTAAATTCTAATTATTTTTAGTGATAAGAACCTAAATTTTAAACCGATCAACTTCATATCTTAGATCCAACTGTTCGTAATAGTGTACCCATTATCTCAAAATTCTGGATACGCCTCAGCAGTTGGTGGTTCAGCTCAACTGTACTTCACTCAACTTTCTCCCAAGCAAAAATTTGTTTCTCAAAAATAAAATAAAATCCAAGATTTGCTCTTACGTCATTATGAGTGGTTGACCCATGATTTAAAGACCACATTTGCATCATGCATTAATGTAGGATCTGTCATTGGATTTTTATAATAAGGAATTTTCAGTCAGTTGGTTGGTTCAAAATTAGATTCAGATTGGTGTAATAGATTTTGATATAAAAACCAACTGATTAACAGGCCAAAGTTATTTCATTCCATTAAGTTTTCTTCTCTTCATTTGATTATATTGAATAAAAGTAGAAGAAAATATTAGCAACAACATACCCGGTGAAATCCCAAAAAGCGGGGTCTTGTGAGGATAGCATGGGTAGAGTGTACGCTATCCTTACCACTACCTCGTGGAGGCAGAGAGACTATTTTTAAAAGACCCTTGGTCAAGTGCATCAACCCAAATAACAAAATAAGAAAGCAATGGAGAAAGAGGAACAAATAATAAGAAAAGCAGTGTAAAGTCTACAATACCAACAACAAAATTGTGTGATGATCGAAAATACAATAAACAACATAGGACAAGAACCACAAGGGCATGACTAGTCCTATGAAACACTGTAAAGTCTAAATCTTTATAAGGCAAGGCAACACTCTACCCTTACTAACCTTCTACCCTAATATGCTATCACCATTCCTTTCTGTCTAAGGTGATGTCCTCGGTAATATGAAGTTGCGGAATATCCTGACTACTCACCTCTCCTCGATACTTTTTCGGCTTACCCCTACCCCTGTGCGTATTCCTTACAATCAGCTCTCGCACCTCCTCTGTACTGGGGCGTCAGTGCAGTTTTTCTGCACATATCAAAACCATCTCAGTCTCCCTTTCCTCATTTTGCCCGTCACAGAGGCACACCCACCTTCTCCGGATTACCTCATCCTAATCTTGTCACTTTTAATATGCCCACACATTCATCTCTACATCGTCATCTTCAAAACATACATTTTTTGAATATGTGATTTCTTGACGGACCAACACTCAAACTCATACGACAAGGACGGTCTAATCACCACTTTGTAAAACTTATCTTTAAGTTTAGGTGGTACCTTCTTATCGCACAAGTCCAAAGGCAAGCCACTTTTTCATACATGCCGCTCCATTGTGATGTGTGACATCATCATCATGTCCCCACTACCCTGGAGGCAGACCCGAGGTATTTAAAATTCTCTCTTCGGAATAGACTGTGTGGCAAGCCTCACTTCCACATCCACTTCATCCAATGCAACACTGAAGTTACAATCCAAATATTCCGTTTGGTCCTGCTCAACCCGAACCCTTTAGACTTCAGATAAGTTAAATATAAATAACAATTAAAAAGTGTGCCTATCAGCCAGATAAGTTAGTGAAAAAACATAGATTAGTTTTGATATTTTTTTCTTATATTAAATATCCTTTATAGTATTTCCAATTTATGCTTAATACTTTTTATGTGTATCATATTTCAGAAATTGTAAATTTAAAACATCGAAGGCAAAATTAGCAAGCCATCACAGTTTGGAGTCATAATCAAATCAGAAGAAAATAAATACGTACTCAGTCACTAATTAAAATCACAAAAGAATTGTGCGTTGATTCAACTGAATTCATCACCTATGATTCTAAACTAGGGCTAAAGGAGAGTTGGTGGTATGAAAGAATGAATAAGAAAAGTAAAGAAAATTAAAAAGAAAAACTAAAGGCTTAAGAAAAAAAAAGAATAGGAAAAGGCTGGTAGCGTAAAACCCAGTAAAAAAAAAAATTAGAAGACCACCACCACCACCACAACAACAACATCAACTTACTCTGTGTAATTCCACAAGTGGGGTATGGGGAGAGTTAGGATGTACGCGGATGGTAAAAAAAAAGGAAAAAATAACAAGGAAGTCTGAAGTGGGAAAGTTAGGAGACTAGAGTCAAATTTACTTGAAGTAAAATTAAGTGCATTGAGGGGGATTTCAACTTTGGTTGCAAAGACGAGGACTTGCAAAAAGATTTCTCAACTAGACCACAACACATTCTGCACTTTCAGATGCCTTTGTTTTCATGTCTATTTCATGTTGATATTACATGTATATACAAAGTTTTTCTCAAAGTCTATTGGGAAGGTGGACAATGTAGGCCCCCCCTCTTGTCATTATGCCGGTTCATGTTTGCCAATGATAATTTTTTTCCTATTTGGGAAAGAAACAACAACATACTCCGTGAAACTTTTCTAGTTGGGAAAGTAAAGGATAAAAATAAAAGCAAAAGGTGTGTTGACACTTGAATATATTTTGGAGAATTTATTGGTTTTATGGCGACTGTTTTTGCAAAAATCTTTTCTATTCATATGGCCCTTGATCCAGCAAGGTACTTCTTATTTTCTTCTTACTCCTTTTTAAGCATTTCATCCGACAATTGATATTTATCCATTTATGCTTTTCTATTGCCCAATGCTGTGTTTGCTGCATAGATTCCATGCCATAATGTATTTGCCTAACTGAAGTCAGAGTAATAATTGGAAGAAAAAGCTGTTGGTGATGCTAGAAACTCAAATAGGCTCCCTGTTAGTGCTTAGTGTTTTTAAATGCAGAAACTACACCAGAATCCTGTGGAGCTTTAAGTACAAAGAGCAACTAAACGAGCGGTTTTAGTGAAGACACAAATTAAGGAAGAAACAGAGTTATGATGTAATACAAGCAGAACAACTGTAACAAAAAACAACAATTTTACACAATGGAATTGAAAAACTTCAAAACTTGACATGTAGGAAGTAAAAATCACGTCTATATGCCCTTATCAGAAAAAAATTAGTAAAAGAAAGCATGTCGATGTTAAGAAACCATTTTAAAATTATGTTTCCAGTTGCAGAAAATGAAATTTTTCTAATTTAAATATAGTGCTTGGTTTTCCTCTATATTTCCAATTCCAATTCTTTATCACTAATGTATTTAATTATGACTTTTATATAGAAATTAATAAGACACTTTACCAGCTGTATGCATTGTTTAGTGCTGCCTTAATTAGGTCAAGCTCTTGATTAACAAGACCCATATAAGCTAAGTTGTTCAGACTCTCCAAAAATGTCGGCCGCACCCGTGTCGGATCCTTCAAAAATACACTGTTTTTGGAGGATTTGACACACACTGGTCAACATTTTTGAAGAGTCCGAGCAACATAACATATAAGTGCTTTGGTTCCTGCAGTAGAACACCATGTGAGCAGGGGAATGCATGACCTGCACCTAGCTTTAGGGTTTAAATGCTCTGTAAATGAGCTCAACAACACTATTTGGTTTCTGAAAATCAAAAGTTAAGTGACATCTAGAATTTAGTAATAATTCCAAATTTGTAATACTGATGAGAGGATACATTCTACGGTGTTTTACACTATTTGAATCATACTGTGCTGTTAGCTTATGTGTAGTGGTAAGCTTGATTAAAGAAGTAGGGACTGGGCACAGGATTCCTTATTTACCTACCCAGACAACTACATATGTTTGGAAGAAGAATTTATTAACTCATTAGCTGACGCCTTTTGCAATGAAGACTTCCTCTCTAGTTGGCATTCTCATTTGAAGCTGCAATTTGTTTTTCCCTCTGTCTGACTGTCTCTTGTAAGCTTATGGAAAAATCGGAACCTTTACTCTTTTGTTTTTCTTTGCAGAGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAG</genome_strand>
        <mrna_strand>AAAAATTTGACATG............................................................................................................................................CATTCTGCCCTGTAGTAGATCTGAATATCAATCTCCATTACAGTGCCACTCATAACTCCGAAAAAACTCGCTTCAATAAAACCCAAATCTTCAATTCAACCTAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTTACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTTTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCTATAGGCATGACAGAATTGCGGATGGTCTCAACATCACTGAAGAAATGCTGAGGCCTGAATCGATGACAAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAATCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458042" ref_strand="+" ref_description="SGN-E458042 [cPRO-4-B19]">
      <seq>caaaaatttgacatgcagcattctcccttgttgcagatctgaatatcaatctccattactgtcccactcataactccgaaaaaactccctccaataaaacccaaatcttcaatttcaccctaattcttcgatttcccactcatcttttttttttggtgccaaaatatactgttactgaagtcactgtaccgcagatttactcgaaattatttgtattcagtagttgccggaaaatgagacggaggaactcggatttccggcggccggtgcgacggcgattctccaatgttttttggttaactttgtgtggattggccgtattgctgctcattattttgctcagcagagaaactcgcgattcatcgtctagattggtttatacaaagagaccctatagacatgacagaattgcggatggtctcaacatcactgaagaaatgctgaggcctgaatcgatgacaagacaaattaatgatcagatttctcttgcaaaggcaattcttgtaattgcaaaagaaagcaacaaccttcaatttgcatgggaactaagtgctcaaatccgcaactcacagatgcttctttctaatgctgctttcagaagaagtcccctgacaaatggagaatcagaaagtgcaattcgagatatggcaattctgctctaccnagcccagcaacttcactatgacagtgcaaccatggttatgagactgaaagcaaaantcaaagccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="44150" stop="52352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44448" g_stop="44826" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51706" g_stop="52052" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="732" r_length="346" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E458042" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44448" e_stop="44826"/>
          <exon e_start="51706" e_stop="52052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTTGACATGCAGCATTCTGCCCTGTTGTAGATCTGAATATCAATCTCCATTACAGTGCCACTCATAACTCCGAAAAAACTCGCTTCAATAAAACCCAAATCTTCAA-TTCAACCAAATTCTTCGATTT--C-C-CA-C-----TTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAGGTAATGTTCGTTTTCGTTGTATTATAAATTGCTGTTGTTTTCTGTTTCTAAGCTAAATATTCTTTTTTAAGCTAGATGAGTTTGTGTGGGTTGTGGAATTTGAGCTTTGCGGGTTAGTCAATTACTTGTTAATGTATTTGACATGGACAAACTGAAATGATTGTTGACATTTGCGATCTAACAGTTTGCAGTAGTATGCAATCAGTCTAAGAGTTAACTCTGAATTTCCATTTTAGAGTTCTTGTCAAAATTTACACAGATCCAAACTCACTATCTCATAAACCATAGACTAAAGCTGAATTGTAGATAAAAAATAAGCGAAACTCAATAAGGGAAGTCTGTGCAATGTGAGCTCTAGGTTTATGAACTTTACAAGGCTATATGCTTACACTTGTGTGTGCTATTCACAGAATCTACTAACAAACTATTTTTAGTTAACTACTGGCTAGCCTCCTTATAACAAAGTAACTGGCCATTAAACAATAATTAATCACCTAACTACAAGCTAACTACAACAACAACCAAAGTTAAGTTGCACCACTGTCAATAGTCTCTACCTTTTGTTTTAGATCCTTATTTAGATAGATTTTGATTTTTAATCCAAGTGTTAGCCTTTCCTTTCAATATTATCTCTTAGGTGAGTGTACAACCAATTCACTAAATCTAGTTAATATGTTGTACAGTCGTTAGGTGTAATTTTCATTGCATTTATTGGTTAATAATGGTCATTTTGGTTTGAGAATTGGCAACTAAGGCACATACAGATCTTTTGAAACAAAAAGGGCAAGTTGGAAATTTCTGAAACTTCTTATGAAATTATTTCTATGTCCAAAAGCAGTTTATGCCCGGTTTAATTATTGTTATCCTTTTAAACAGCTAAAAGTACTATGAAGCTTTCTTTCTTTCAAAGATATGTTCCAAGTGAATTTAAAGTAATTGTTTCTTGTCGAAGAACACCTAATTCTTTGAGAATATGTATCAAACTTTTCACCTATTTGGTAATGGCCCATTCCCAGGTCCTTGATCACCGGTATTTTGTTTCCCGACAACAAACTTCTAAAGGATAATTGTAGTCAACTTTTTTTTCCTATTACTTATGGATATTATTGCTATGGGGTAAGTGTCAATAAGTACATTGCTCGACAAATGTCACAAGATCTCCACTGTGCATTGATTAATCAGAAGAGATTATGACTACATTTAGCATTTTGGAGTGAGTCTATAGCTGGGCTTGTGAAATAATTTGACGTTTTTTGGTTACCATGAGCAGTAGTTATTGATTTTGGAAAAATACTTTAATGCTAAAAGAAATCTTGTACAGTAGTAACAGTGTCTGAAAGTATCTGGGCTACTTTGGGGCCTGGAACTAATATCTTTATTTTTTTGGGATTAGGCTATCAAGATGAAATTCATGGTATTGATGGATAAACAAATTTGGTCAAATTAAAGAAACAAAAAGATAGGTTTATTCTTGTTTATGACTTGAGGGTATCGTGAAGATCTGTCATATTAATGCCCTCAGCCTCAAGTAAATCTGCTTCAAAGATGATAAAGATAGCAAATAGAAAAGGAAAAGTTAAGCATCCGAGTCTAAGACATGGAAGAATACCGTAGTCCCTTCCTCCCAAATTTAAGCTTTTGGGAACATTGAGGTGTCCACACTTGGTGGGAAGTTCATAAACTGATCATTTCATATTACACTACCCCATGTCTTATGAAAGAATTAAATGAAACCAAGAGAAATCTGATCAACATGTAGTTTATTGTGGCCTCCACATTTTTCTAGTTTAGCATTAAACAATGTGGTACAATTTGATTATTGTTCAAGTACCTCCATCAAGCTGTGGCAGTCAAAGACAAAGTACAGAGTGGCTCGATCTAGAAGCGTCTTAATAAAAGCCTAGATATTCTTCACGGAATTAACAAAATCAATAGAATACAAAGTATGTATAAAGAAAATAGGTTCCATATAAGTTATGCTGGGAGTTGGGAAAACTTAAAAATTATTTAGGGGCACATGGAAGTAATTAATAGATGAAGGACATAAAAAATATCAATTATACAAGACATACCATAGTTACTTGTCTTCCTTGTGGTCTACGTTGTAATTTGCTAATCTTATTGAATGTCTCAAAGGAACCAAGAATGCAGGGTACCCTTTTCGAAAATTAAGAATGTAGAGTTACATAATATATATTTTAGAAGCAATCAATGTAAAATTGTACCCCTCTGTCCCAATTTGTGAGACACACTAATTTTTTTAGTTTGTCCCAAAAAAGAATGTCACTTTTTATAGCAAAAATAACTTAACATTGAAATTCCCCTTTTACCCTTAATGAAATAATTTATTGCCACACAAATATCTAAGATTTATTTTGGATCACAAATTTTATAAGTCACCTTTCTTTCTTAAACTTGTGTCAAGCCACGCGGTGCTACATAAATTGGGACGGAGGGAGTAAAACATAATTCCTACCTTAGAACATAGGTAATTGGAAAAGAATTCTTCTAACAAATTGAATAATTTATGTAAGCTGAGGACACAAATATTGCTTTTTGAGGTGATCCAGATAAAATGGGGAGGTTTCTGTTATCTGTAGATAACAATGTGGTTCTAAGAGTAGCTGAAAACACTCTGGTATTACTCAACACAGATTTCACCTTTATTCTGGAGTGGTCAATATGGGAAGGTCAAAAAGATTCGGTGAAGTAGTTTTTTTTCTGCTTTTTGAATGATCTACGATATTTTTAAAAAGAAGATAGGAACAGTCTTGGTGGCAGAGGTGTATCCCAGAAGGGGTCACTCGGTTCACTTGAACCCATGCTTCCCTCCTGAAATCATATATAGTAGTGTTATATTTTTTTTAAAAATATTTAAATATAGATACGTGAACCCATAGTTGAAGTATCATACCATGCGATTATGGTTGGGTGCAACTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATTTCTCTTGTTTTATTTTCCTTTTAAAAATTGGATAACGCTTCTCTAAGTGGTTTGGATAGGTAAAAGTAATTTTGGATCTATAATTTTTAAATTCTAATTATTTTTAGTGATAAGAACCTAAATTTTAAACCGATCAACTTCATATCTTAGATCCAACTGTTCGTAATAGTGTACCCATTATCTCAAAATTCTGGATACGCCTCAGCAGTTGGTGGTTCAGCTCAACTGTACTTCACTCAACTTTCTCCCAAGCAAAAATTTGTTTCTCAAAAATAAAATAAAATCCAAGATTTGCTCTTACGTCATTATGAGTGGTTGACCCATGATTTAAAGACCACATTTGCATCATGCATTAATGTAGGATCTGTCATTGGATTTTTATAATAAGGAATTTTCAGTCAGTTGGTTGGTTCAAAATTAGATTCAGATTGGTGTAATAGATTTTGATATAAAAACCAACTGATTAACAGGCCAAAGTTATTTCATTCCATTAAGTTTTCTTCTCTTCATTTGATTATATTGAATAAAAGTAGAAGAAAATATTAGCAACAACATACCCGGTGAAATCCCAAAAAGCGGGGTCTTGTGAGGATAGCATGGGTAGAGTGTACGCTATCCTTACCACTACCTCGTGGAGGCAGAGAGACTATTTTTAAAAGACCCTTGGTCAAGTGCATCAACCCAAATAACAAAATAAGAAAGCAATGGAGAAAGAGGAACAAATAATAAGAAAAGCAGTGTAAAGTCTACAATACCAACAACAAAATTGTGTGATGATCGAAAATACAATAAACAACATAGGACAAGAACCACAAGGGCATGACTAGTCCTATGAAACACTGTAAAGTCTAAATCTTTATAAGGCAAGGCAACACTCTACCCTTACTAACCTTCTACCCTAATATGCTATCACCATTCCTTTCTGTCTAAGGTGATGTCCTCGGTAATATGAAGTTGCGGAATATCCTGACTACTCACCTCTCCTCGATACTTTTTCGGCTTACCCCTACCCCTGTGCGTATTCCTTACAATCAGCTCTCGCACCTCCTCTGTACTGGGGCGTCAGTGCAGTTTTTCTGCACATATCAAAACCATCTCAGTCTCCCTTTCCTCATTTTGCCCGTCACAGAGGCACACCCACCTTCTCCGGATTACCTCATCCTAATCTTGTCACTTTTAATATGCCCACACATTCATCTCTACATCGTCATCTTCAAAACATACATTTTTTGAATATGTGATTTCTTGACGGACCAACACTCAAACTCATACGACAAGGACGGTCTAATCACCACTTTGTAAAACTTATCTTTAAGTTTAGGTGGTACCTTCTTATCGCACAAGTCCAAAGGCAAGCCACTTTTTCATACATGCCGCTCCATTGTGATGTGTGACATCATCATCATGTCCCCACTACCCTGGAGGCAGACCCGAGGTATTTAAAATTCTCTCTTCGGAATAGACTGTGTGGCAAGCCTCACTTCCACATCCACTTCATCCAATGCAACACTGAAGTTACAATCCAAATATTCCGTTTGGTCCTGCTCAACCCGAACCCTTTAGACTTCAGATAAGTTAAATATAAATAACAATTAAAAAGTGTGCCTATCAGCCAGATAAGTTAGTGAAAAAACATAGATTAGTTTTGATATTTTTTTCTTATATTAAATATCCTTTATAGTATTTCCAATTTATGCTTAATACTTTTTATGTGTATCATATTTCAGAAATTGTAAATTTAAAACATCGAAGGCAAAATTAGCAAGCCATCACAGTTTGGAGTCATAATCAAATCAGAAGAAAATAAATACGTACTCAGTCACTAATTAAAATCACAAAAGAATTGTGCGTTGATTCAACTGAATTCATCACCTATGATTCTAAACTAGGGCTAAAGGAGAGTTGGTGGTATGAAAGAATGAATAAGAAAAGTAAAGAAAATTAAAAAGAAAAACTAAAGGCTTAAGAAAAAAAAAGAATAGGAAAAGGCTGGTAGCGTAAAACCCAGTAAAAAAAAAAATTAGAAGACCACCACCACCACCACAACAACAACATCAACTTACTCTGTGTAATTCCACAAGTGGGGTATGGGGAGAGTTAGGATGTACGCGGATGGTAAAAAAAAAGGAAAAAATAACAAGGAAGTCTGAAGTGGGAAAGTTAGGAGACTAGAGTCAAATTTACTTGAAGTAAAATTAAGTGCATTGAGGGGGATTTCAACTTTGGTTGCAAAGACGAGGACTTGCAAAAAGATTTCTCAACTAGACCACAACACATTCTGCACTTTCAGATGCCTTTGTTTTCATGTCTATTTCATGTTGATATTACATGTATATACAAAGTTTTTCTCAAAGTCTATTGGGAAGGTGGACAATGTAGGCCCCCCCTCTTGTCATTATGCCGGTTCATGTTTGCCAATGATAATTTTTTTCCTATTTGGGAAAGAAACAACAACATACTCCGTGAAACTTTTCTAGTTGGGAAAGTAAAGGATAAAAATAAAAGCAAAAGGTGTGTTGACACTTGAATATATTTTGGAGAATTTATTGGTTTTATGGCGACTGTTTTTGCAAAAATCTTTTCTATTCATATGGCCCTTGATCCAGCAAGGTACTTCTTATTTTCTTCTTACTCCTTTTTAAGCATTTCATCCGACAATTGATATTTATCCATTTATGCTTTTCTATTGCCCAATGCTGTGTTTGCTGCATAGATTCCATGCCATAATGTATTTGCCTAACTGAAGTCAGAGTAATAATTGGAAGAAAAAGCTGTTGGTGATGCTAGAAACTCAAATAGGCTCCCTGTTAGTGCTTAGTGTTTTTAAATGCAGAAACTACACCAGAATCCTGTGGAGCTTTAAGTACAAAGAGCAACTAAACGAGCGGTTTTAGTGAAGACACAAATTAAGGAAGAAACAGAGTTATGATGTAATACAAGCAGAACAACTGTAACAAAAAACAACAATTTTACACAATGGAATTGAAAAACTTCAAAACTTGACATGTAGGAAGTAAAAATCACGTCTATATGCCCTTATCAGAAAAAAATTAGTAAAAGAAAGCATGTCGATGTTAAGAAACCATTTTAAAATTATGTTTCCAGTTGCAGAAAATGAAATTTTTCTAATTTAAATATAGTGCTTGGTTTTCCTCTATATTTCCAATTCCAATTCTTTATCACTAATGTATTTAATTATGACTTTTATATAGAAATTAATAAGACACTTTACCAGCTGTATGCATTGTTTAGTGCTGCCTTAATTAGGTCAAGCTCTTGATTAACAAGACCCATATAAGCTAAGTTGTTCAGACTCTCCAAAAATGTCGGCCGCACCCGTGTCGGATCCTTCAAAAATACACTGTTTTTGGAGGATTTGACACACACTGGTCAACATTTTTGAAGAGTCCGAGCAACATAACATATAAGTGCTTTGGTTCCTGCAGTAGAACACCATGTGAGCAGGGGAATGCATGACCTGCACCTAGCTTTAGGGTTTAAATGCTCTGTAAATGAGCTCAACAACACTATTTGGTTTCTGAAAATCAAAAGTTAAGTGACATCTAGAATTTAGTAATAATTCCAAATTTGTAATACTGATGAGAGGATACATTCTACGGTGTTTTACACTATTTGAATCATACTGTGCTGTTAGCTTATGTGTAGTGGTAAGCTTGATTAAAGAAGTAGGGACTGGGCACAGGATTCCTTATTTACCTACCCAGACAACTACATATGTTTGGAAGAAGAATTTATTAACTCATTAGCTGACGCCTTTTGCAATGAAGACTTCCTCTCTAGTTGGCATTCTCATTTGAAGCTGCAATTTGTTTTTCCCTCTGTCTGACTGTCTCTTGTAAGCTTATGGAAAAATCGGAACCTTTACTCTTTTGTTTTTCTTTGCAGAGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTACTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAGACTGAAAGGTAAAATCCAAAGCCTTGA</genome_strand>
        <mrna_strand>CAAAAATTTGACATGCAGCATTCTCCCTTGTTGCAGATCTGAATATCAATCTCCATTACTGTCCCACTCATAACTCCGAAAAAACTCCCTCCAATAAAACCCAAATCTTCAATTTCACCCTAATTCTTCGATTTCCCACTCATCTTTTTTTTTTGGTGCCAAAATATACTGTTACT---GAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTTGCCGG-AAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGCGACGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGCCGTATTGCTGCTCATTATTTTGCTCAGCAGAGAAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCTATAGACATGACAGAATTGCGGATGGTCTCAACATCACTGAAGAAATGCTGAGGCCTGAATCGATGACAAGACAAATTAATGATCAGATTTCTCTTGCAAAGGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTTCAGAAGAAGTCCCCTGACAAATGGAGAATCAGAAAGTGCAATTCGAGATATGGCAATTCTGCTCTACCNAGCCCAGCAACTTCACTATGACAGTGCAACCATGGTTATGAGACTGAAA-GCAAAANTCAAAGCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329537" ref_strand="+" ref_description="SGN-E329537 [cTOD-11-O3]">
      <seq>ctcgtgccgctcataactcctaaaaaactcgcttcaataaaacccaaatcttcaattcaaccaaattcttcgatttcccacttttgggtgccacaatatactgtgactgaagaagtcactgtaccgcagatttactcgaaattatttgtattcagtagtcgccggaaaaatgagacggaggaactcggatttccggcggccggtgaggcggcgattctccaatgttttttggttaactttgtgtggattggtcgtattgctgctcattattttgctcagcagaacaactcgcgattcatcgtctagattggtttatacaaagagaccttataggcatgacagaattgcagatggtctcaacattactgaagaaatgctgaggcctgaatcgatgacaagacaaattaatgatcagatttctcttgcaaaagcaattcttgtaattgcaaaagaaagcaacaaccttcaatttgcatgggaactaagtgctcaaatccgtaactcacagatgcttctttctaatgctgcttcaagaagaagccccttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="44208" stop="52232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44505" g_stop="44826" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51706" g_stop="51932" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="549" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E329537" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44505" e_stop="44826"/>
          <exon e_start="51706" e_stop="51932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTGCCACTCATAACTCCGAAAAAACTCGCTTCAATAAAACCCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAGGTAATGTTCGTTTTCGTTGTATTATAAATTGCTGTTGTTTTCTGTTTCTAAGCTAAATATTCTTTTTTAAGCTAGATGAGTTTGTGTGGGTTGTGGAATTTGAGCTTTGCGGGTTAGTCAATTACTTGTTAATGTATTTGACATGGACAAACTGAAATGATTGTTGACATTTGCGATCTAACAGTTTGCAGTAGTATGCAATCAGTCTAAGAGTTAACTCTGAATTTCCATTTTAGAGTTCTTGTCAAAATTTACACAGATCCAAACTCACTATCTCATAAACCATAGACTAAAGCTGAATTGTAGATAAAAAATAAGCGAAACTCAATAAGGGAAGTCTGTGCAATGTGAGCTCTAGGTTTATGAACTTTACAAGGCTATATGCTTACACTTGTGTGTGCTATTCACAGAATCTACTAACAAACTATTTTTAGTTAACTACTGGCTAGCCTCCTTATAACAAAGTAACTGGCCATTAAACAATAATTAATCACCTAACTACAAGCTAACTACAACAACAACCAAAGTTAAGTTGCACCACTGTCAATAGTCTCTACCTTTTGTTTTAGATCCTTATTTAGATAGATTTTGATTTTTAATCCAAGTGTTAGCCTTTCCTTTCAATATTATCTCTTAGGTGAGTGTACAACCAATTCACTAAATCTAGTTAATATGTTGTACAGTCGTTAGGTGTAATTTTCATTGCATTTATTGGTTAATAATGGTCATTTTGGTTTGAGAATTGGCAACTAAGGCACATACAGATCTTTTGAAACAAAAAGGGCAAGTTGGAAATTTCTGAAACTTCTTATGAAATTATTTCTATGTCCAAAAGCAGTTTATGCCCGGTTTAATTATTGTTATCCTTTTAAACAGCTAAAAGTACTATGAAGCTTTCTTTCTTTCAAAGATATGTTCCAAGTGAATTTAAAGTAATTGTTTCTTGTCGAAGAACACCTAATTCTTTGAGAATATGTATCAAACTTTTCACCTATTTGGTAATGGCCCATTCCCAGGTCCTTGATCACCGGTATTTTGTTTCCCGACAACAAACTTCTAAAGGATAATTGTAGTCAACTTTTTTTTCCTATTACTTATGGATATTATTGCTATGGGGTAAGTGTCAATAAGTACATTGCTCGACAAATGTCACAAGATCTCCACTGTGCATTGATTAATCAGAAGAGATTATGACTACATTTAGCATTTTGGAGTGAGTCTATAGCTGGGCTTGTGAAATAATTTGACGTTTTTTGGTTACCATGAGCAGTAGTTATTGATTTTGGAAAAATACTTTAATGCTAAAAGAAATCTTGTACAGTAGTAACAGTGTCTGAAAGTATCTGGGCTACTTTGGGGCCTGGAACTAATATCTTTATTTTTTTGGGATTAGGCTATCAAGATGAAATTCATGGTATTGATGGATAAACAAATTTGGTCAAATTAAAGAAACAAAAAGATAGGTTTATTCTTGTTTATGACTTGAGGGTATCGTGAAGATCTGTCATATTAATGCCCTCAGCCTCAAGTAAATCTGCTTCAAAGATGATAAAGATAGCAAATAGAAAAGGAAAAGTTAAGCATCCGAGTCTAAGACATGGAAGAATACCGTAGTCCCTTCCTCCCAAATTTAAGCTTTTGGGAACATTGAGGTGTCCACACTTGGTGGGAAGTTCATAAACTGATCATTTCATATTACACTACCCCATGTCTTATGAAAGAATTAAATGAAACCAAGAGAAATCTGATCAACATGTAGTTTATTGTGGCCTCCACATTTTTCTAGTTTAGCATTAAACAATGTGGTACAATTTGATTATTGTTCAAGTACCTCCATCAAGCTGTGGCAGTCAAAGACAAAGTACAGAGTGGCTCGATCTAGAAGCGTCTTAATAAAAGCCTAGATATTCTTCACGGAATTAACAAAATCAATAGAATACAAAGTATGTATAAAGAAAATAGGTTCCATATAAGTTATGCTGGGAGTTGGGAAAACTTAAAAATTATTTAGGGGCACATGGAAGTAATTAATAGATGAAGGACATAAAAAATATCAATTATACAAGACATACCATAGTTACTTGTCTTCCTTGTGGTCTACGTTGTAATTTGCTAATCTTATTGAATGTCTCAAAGGAACCAAGAATGCAGGGTACCCTTTTCGAAAATTAAGAATGTAGAGTTACATAATATATATTTTAGAAGCAATCAATGTAAAATTGTACCCCTCTGTCCCAATTTGTGAGACACACTAATTTTTTTAGTTTGTCCCAAAAAAGAATGTCACTTTTTATAGCAAAAATAACTTAACATTGAAATTCCCCTTTTACCCTTAATGAAATAATTTATTGCCACACAAATATCTAAGATTTATTTTGGATCACAAATTTTATAAGTCACCTTTCTTTCTTAAACTTGTGTCAAGCCACGCGGTGCTACATAAATTGGGACGGAGGGAGTAAAACATAATTCCTACCTTAGAACATAGGTAATTGGAAAAGAATTCTTCTAACAAATTGAATAATTTATGTAAGCTGAGGACACAAATATTGCTTTTTGAGGTGATCCAGATAAAATGGGGAGGTTTCTGTTATCTGTAGATAACAATGTGGTTCTAAGAGTAGCTGAAAACACTCTGGTATTACTCAACACAGATTTCACCTTTATTCTGGAGTGGTCAATATGGGAAGGTCAAAAAGATTCGGTGAAGTAGTTTTTTTTCTGCTTTTTGAATGATCTACGATATTTTTAAAAAGAAGATAGGAACAGTCTTGGTGGCAGAGGTGTATCCCAGAAGGGGTCACTCGGTTCACTTGAACCCATGCTTCCCTCCTGAAATCATATATAGTAGTGTTATATTTTTTTTAAAAATATTTAAATATAGATACGTGAACCCATAGTTGAAGTATCATACCATGCGATTATGGTTGGGTGCAACTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATTTCTCTTGTTTTATTTTCCTTTTAAAAATTGGATAACGCTTCTCTAAGTGGTTTGGATAGGTAAAAGTAATTTTGGATCTATAATTTTTAAATTCTAATTATTTTTAGTGATAAGAACCTAAATTTTAAACCGATCAACTTCATATCTTAGATCCAACTGTTCGTAATAGTGTACCCATTATCTCAAAATTCTGGATACGCCTCAGCAGTTGGTGGTTCAGCTCAACTGTACTTCACTCAACTTTCTCCCAAGCAAAAATTTGTTTCTCAAAAATAAAATAAAATCCAAGATTTGCTCTTACGTCATTATGAGTGGTTGACCCATGATTTAAAGACCACATTTGCATCATGCATTAATGTAGGATCTGTCATTGGATTTTTATAATAAGGAATTTTCAGTCAGTTGGTTGGTTCAAAATTAGATTCAGATTGGTGTAATAGATTTTGATATAAAAACCAACTGATTAACAGGCCAAAGTTATTTCATTCCATTAAGTTTTCTTCTCTTCATTTGATTATATTGAATAAAAGTAGAAGAAAATATTAGCAACAACATACCCGGTGAAATCCCAAAAAGCGGGGTCTTGTGAGGATAGCATGGGTAGAGTGTACGCTATCCTTACCACTACCTCGTGGAGGCAGAGAGACTATTTTTAAAAGACCCTTGGTCAAGTGCATCAACCCAAATAACAAAATAAGAAAGCAATGGAGAAAGAGGAACAAATAATAAGAAAAGCAGTGTAAAGTCTACAATACCAACAACAAAATTGTGTGATGATCGAAAATACAATAAACAACATAGGACAAGAACCACAAGGGCATGACTAGTCCTATGAAACACTGTAAAGTCTAAATCTTTATAAGGCAAGGCAACACTCTACCCTTACTAACCTTCTACCCTAATATGCTATCACCATTCCTTTCTGTCTAAGGTGATGTCCTCGGTAATATGAAGTTGCGGAATATCCTGACTACTCACCTCTCCTCGATACTTTTTCGGCTTACCCCTACCCCTGTGCGTATTCCTTACAATCAGCTCTCGCACCTCCTCTGTACTGGGGCGTCAGTGCAGTTTTTCTGCACATATCAAAACCATCTCAGTCTCCCTTTCCTCATTTTGCCCGTCACAGAGGCACACCCACCTTCTCCGGATTACCTCATCCTAATCTTGTCACTTTTAATATGCCCACACATTCATCTCTACATCGTCATCTTCAAAACATACATTTTTTGAATATGTGATTTCTTGACGGACCAACACTCAAACTCATACGACAAGGACGGTCTAATCACCACTTTGTAAAACTTATCTTTAAGTTTAGGTGGTACCTTCTTATCGCACAAGTCCAAAGGCAAGCCACTTTTTCATACATGCCGCTCCATTGTGATGTGTGACATCATCATCATGTCCCCACTACCCTGGAGGCAGACCCGAGGTATTTAAAATTCTCTCTTCGGAATAGACTGTGTGGCAAGCCTCACTTCCACATCCACTTCATCCAATGCAACACTGAAGTTACAATCCAAATATTCCGTTTGGTCCTGCTCAACCCGAACCCTTTAGACTTCAGATAAGTTAAATATAAATAACAATTAAAAAGTGTGCCTATCAGCCAGATAAGTTAGTGAAAAAACATAGATTAGTTTTGATATTTTTTTCTTATATTAAATATCCTTTATAGTATTTCCAATTTATGCTTAATACTTTTTATGTGTATCATATTTCAGAAATTGTAAATTTAAAACATCGAAGGCAAAATTAGCAAGCCATCACAGTTTGGAGTCATAATCAAATCAGAAGAAAATAAATACGTACTCAGTCACTAATTAAAATCACAAAAGAATTGTGCGTTGATTCAACTGAATTCATCACCTATGATTCTAAACTAGGGCTAAAGGAGAGTTGGTGGTATGAAAGAATGAATAAGAAAAGTAAAGAAAATTAAAAAGAAAAACTAAAGGCTTAAGAAAAAAAAAGAATAGGAAAAGGCTGGTAGCGTAAAACCCAGTAAAAAAAAAAATTAGAAGACCACCACCACCACCACAACAACAACATCAACTTACTCTGTGTAATTCCACAAGTGGGGTATGGGGAGAGTTAGGATGTACGCGGATGGTAAAAAAAAAGGAAAAAATAACAAGGAAGTCTGAAGTGGGAAAGTTAGGAGACTAGAGTCAAATTTACTTGAAGTAAAATTAAGTGCATTGAGGGGGATTTCAACTTTGGTTGCAAAGACGAGGACTTGCAAAAAGATTTCTCAACTAGACCACAACACATTCTGCACTTTCAGATGCCTTTGTTTTCATGTCTATTTCATGTTGATATTACATGTATATACAAAGTTTTTCTCAAAGTCTATTGGGAAGGTGGACAATGTAGGCCCCCCCTCTTGTCATTATGCCGGTTCATGTTTGCCAATGATAATTTTTTTCCTATTTGGGAAAGAAACAACAACATACTCCGTGAAACTTTTCTAGTTGGGAAAGTAAAGGATAAAAATAAAAGCAAAAGGTGTGTTGACACTTGAATATATTTTGGAGAATTTATTGGTTTTATGGCGACTGTTTTTGCAAAAATCTTTTCTATTCATATGGCCCTTGATCCAGCAAGGTACTTCTTATTTTCTTCTTACTCCTTTTTAAGCATTTCATCCGACAATTGATATTTATCCATTTATGCTTTTCTATTGCCCAATGCTGTGTTTGCTGCATAGATTCCATGCCATAATGTATTTGCCTAACTGAAGTCAGAGTAATAATTGGAAGAAAAAGCTGTTGGTGATGCTAGAAACTCAAATAGGCTCCCTGTTAGTGCTTAGTGTTTTTAAATGCAGAAACTACACCAGAATCCTGTGGAGCTTTAAGTACAAAGAGCAACTAAACGAGCGGTTTTAGTGAAGACACAAATTAAGGAAGAAACAGAGTTATGATGTAATACAAGCAGAACAACTGTAACAAAAAACAACAATTTTACACAATGGAATTGAAAAACTTCAAAACTTGACATGTAGGAAGTAAAAATCACGTCTATATGCCCTTATCAGAAAAAAATTAGTAAAAGAAAGCATGTCGATGTTAAGAAACCATTTTAAAATTATGTTTCCAGTTGCAGAAAATGAAATTTTTCTAATTTAAATATAGTGCTTGGTTTTCCTCTATATTTCCAATTCCAATTCTTTATCACTAATGTATTTAATTATGACTTTTATATAGAAATTAATAAGACACTTTACCAGCTGTATGCATTGTTTAGTGCTGCCTTAATTAGGTCAAGCTCTTGATTAACAAGACCCATATAAGCTAAGTTGTTCAGACTCTCCAAAAATGTCGGCCGCACCCGTGTCGGATCCTTCAAAAATACACTGTTTTTGGAGGATTTGACACACACTGGTCAACATTTTTGAAGAGTCCGAGCAACATAACATATAAGTGCTTTGGTTCCTGCAGTAGAACACCATGTGAGCAGGGGAATGCATGACCTGCACCTAGCTTTAGGGTTTAAATGCTCTGTAAATGAGCTCAACAACACTATTTGGTTTCTGAAAATCAAAAGTTAAGTGACATCTAGAATTTAGTAATAATTCCAAATTTGTAATACTGATGAGAGGATACATTCTACGGTGTTTTACACTATTTGAATCATACTGTGCTGTTAGCTTATGTGTAGTGGTAAGCTTGATTAAAGAAGTAGGGACTGGGCACAGGATTCCTTATTTACCTACCCAGACAACTACATATGTTTGGAAGAAGAATTTATTAACTCATTAGCTGACGCCTTTTGCAATGAAGACTTCCTCTCTAGTTGGCATTCTCATTTGAAGCTGCAATTTGTTTTTCCCTCTGTCTGACTGTCTCTTGTAAGCTTATGGAAAAATCGGAACCTTTACTCTTTTGTTTTTCTTTGCAGAGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGAC</genome_strand>
        <mrna_strand>CTCGTGCCGCTCATAACTCCTAAAAAACTCGCTTCAATAAAACCCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTTATAGGCATGACAGAATTGCAGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACAAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGTAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314818" ref_strand="+" ref_description="SGN-E314818 [cTOA-20-P7]">
      <seq>tcgcttcaataaaacccaaatcttcaattcaaccaaattcttcgatttcccacttttgggtgccacaatatactgtgactgaagaagtcactgtaccgcagatttactcgaaattatttgtattcagtagtcgccggaaaaatgagacggaggaactcggatttccggcggccggtgaggcggcgattctccaatgttttttggttaactttgtgtggattggtcgtattgctgctcattattttgctcagcagaacaactcgcgattcatcgtctagattggtttatacaaagagaccttataggcatgacagaattgcagatggtctcaacattactgaagaaatgctgaggcctgaatcgatgacaagacaaattaatgatcagatttctcttgcaaaagcaattcttgtaattgcaaaagaaagcaacaaccttcaatttgcatgggaactaagtgctcaaatccgtaactcacagatgcttctttctaatgctgcttcaagaagaagccccttgacaaacggagaatcagaaagtgcaattcgagatatggcacttctactctaccnagcccagcaacttcactatgacagtgcaaccatggttatgagactgaaagctaaaatccaagcttgaagaacaggcaaattccttcagtgagaagagttcaaatatggacaattgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="44233" stop="52407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44533" g_stop="44826" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51706" g_stop="52107" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="692" r_length="398" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E314818" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44533" e_stop="44826"/>
          <exon e_start="51706" e_stop="52107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTCAATAAAACCCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAGGTAATGTTCGTTTTCGTTGTATTATAAATTGCTGTTGTTTTCTGTTTCTAAGCTAAATATTCTTTTTTAAGCTAGATGAGTTTGTGTGGGTTGTGGAATTTGAGCTTTGCGGGTTAGTCAATTACTTGTTAATGTATTTGACATGGACAAACTGAAATGATTGTTGACATTTGCGATCTAACAGTTTGCAGTAGTATGCAATCAGTCTAAGAGTTAACTCTGAATTTCCATTTTAGAGTTCTTGTCAAAATTTACACAGATCCAAACTCACTATCTCATAAACCATAGACTAAAGCTGAATTGTAGATAAAAAATAAGCGAAACTCAATAAGGGAAGTCTGTGCAATGTGAGCTCTAGGTTTATGAACTTTACAAGGCTATATGCTTACACTTGTGTGTGCTATTCACAGAATCTACTAACAAACTATTTTTAGTTAACTACTGGCTAGCCTCCTTATAACAAAGTAACTGGCCATTAAACAATAATTAATCACCTAACTACAAGCTAACTACAACAACAACCAAAGTTAAGTTGCACCACTGTCAATAGTCTCTACCTTTTGTTTTAGATCCTTATTTAGATAGATTTTGATTTTTAATCCAAGTGTTAGCCTTTCCTTTCAATATTATCTCTTAGGTGAGTGTACAACCAATTCACTAAATCTAGTTAATATGTTGTACAGTCGTTAGGTGTAATTTTCATTGCATTTATTGGTTAATAATGGTCATTTTGGTTTGAGAATTGGCAACTAAGGCACATACAGATCTTTTGAAACAAAAAGGGCAAGTTGGAAATTTCTGAAACTTCTTATGAAATTATTTCTATGTCCAAAAGCAGTTTATGCCCGGTTTAATTATTGTTATCCTTTTAAACAGCTAAAAGTACTATGAAGCTTTCTTTCTTTCAAAGATATGTTCCAAGTGAATTTAAAGTAATTGTTTCTTGTCGAAGAACACCTAATTCTTTGAGAATATGTATCAAACTTTTCACCTATTTGGTAATGGCCCATTCCCAGGTCCTTGATCACCGGTATTTTGTTTCCCGACAACAAACTTCTAAAGGATAATTGTAGTCAACTTTTTTTTCCTATTACTTATGGATATTATTGCTATGGGGTAAGTGTCAATAAGTACATTGCTCGACAAATGTCACAAGATCTCCACTGTGCATTGATTAATCAGAAGAGATTATGACTACATTTAGCATTTTGGAGTGAGTCTATAGCTGGGCTTGTGAAATAATTTGACGTTTTTTGGTTACCATGAGCAGTAGTTATTGATTTTGGAAAAATACTTTAATGCTAAAAGAAATCTTGTACAGTAGTAACAGTGTCTGAAAGTATCTGGGCTACTTTGGGGCCTGGAACTAATATCTTTATTTTTTTGGGATTAGGCTATCAAGATGAAATTCATGGTATTGATGGATAAACAAATTTGGTCAAATTAAAGAAACAAAAAGATAGGTTTATTCTTGTTTATGACTTGAGGGTATCGTGAAGATCTGTCATATTAATGCCCTCAGCCTCAAGTAAATCTGCTTCAAAGATGATAAAGATAGCAAATAGAAAAGGAAAAGTTAAGCATCCGAGTCTAAGACATGGAAGAATACCGTAGTCCCTTCCTCCCAAATTTAAGCTTTTGGGAACATTGAGGTGTCCACACTTGGTGGGAAGTTCATAAACTGATCATTTCATATTACACTACCCCATGTCTTATGAAAGAATTAAATGAAACCAAGAGAAATCTGATCAACATGTAGTTTATTGTGGCCTCCACATTTTTCTAGTTTAGCATTAAACAATGTGGTACAATTTGATTATTGTTCAAGTACCTCCATCAAGCTGTGGCAGTCAAAGACAAAGTACAGAGTGGCTCGATCTAGAAGCGTCTTAATAAAAGCCTAGATATTCTTCACGGAATTAACAAAATCAATAGAATACAAAGTATGTATAAAGAAAATAGGTTCCATATAAGTTATGCTGGGAGTTGGGAAAACTTAAAAATTATTTAGGGGCACATGGAAGTAATTAATAGATGAAGGACATAAAAAATATCAATTATACAAGACATACCATAGTTACTTGTCTTCCTTGTGGTCTACGTTGTAATTTGCTAATCTTATTGAATGTCTCAAAGGAACCAAGAATGCAGGGTACCCTTTTCGAAAATTAAGAATGTAGAGTTACATAATATATATTTTAGAAGCAATCAATGTAAAATTGTACCCCTCTGTCCCAATTTGTGAGACACACTAATTTTTTTAGTTTGTCCCAAAAAAGAATGTCACTTTTTATAGCAAAAATAACTTAACATTGAAATTCCCCTTTTACCCTTAATGAAATAATTTATTGCCACACAAATATCTAAGATTTATTTTGGATCACAAATTTTATAAGTCACCTTTCTTTCTTAAACTTGTGTCAAGCCACGCGGTGCTACATAAATTGGGACGGAGGGAGTAAAACATAATTCCTACCTTAGAACATAGGTAATTGGAAAAGAATTCTTCTAACAAATTGAATAATTTATGTAAGCTGAGGACACAAATATTGCTTTTTGAGGTGATCCAGATAAAATGGGGAGGTTTCTGTTATCTGTAGATAACAATGTGGTTCTAAGAGTAGCTGAAAACACTCTGGTATTACTCAACACAGATTTCACCTTTATTCTGGAGTGGTCAATATGGGAAGGTCAAAAAGATTCGGTGAAGTAGTTTTTTTTCTGCTTTTTGAATGATCTACGATATTTTTAAAAAGAAGATAGGAACAGTCTTGGTGGCAGAGGTGTATCCCAGAAGGGGTCACTCGGTTCACTTGAACCCATGCTTCCCTCCTGAAATCATATATAGTAGTGTTATATTTTTTTTAAAAATATTTAAATATAGATACGTGAACCCATAGTTGAAGTATCATACCATGCGATTATGGTTGGGTGCAACTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATTTCTCTTGTTTTATTTTCCTTTTAAAAATTGGATAACGCTTCTCTAAGTGGTTTGGATAGGTAAAAGTAATTTTGGATCTATAATTTTTAAATTCTAATTATTTTTAGTGATAAGAACCTAAATTTTAAACCGATCAACTTCATATCTTAGATCCAACTGTTCGTAATAGTGTACCCATTATCTCAAAATTCTGGATACGCCTCAGCAGTTGGTGGTTCAGCTCAACTGTACTTCACTCAACTTTCTCCCAAGCAAAAATTTGTTTCTCAAAAATAAAATAAAATCCAAGATTTGCTCTTACGTCATTATGAGTGGTTGACCCATGATTTAAAGACCACATTTGCATCATGCATTAATGTAGGATCTGTCATTGGATTTTTATAATAAGGAATTTTCAGTCAGTTGGTTGGTTCAAAATTAGATTCAGATTGGTGTAATAGATTTTGATATAAAAACCAACTGATTAACAGGCCAAAGTTATTTCATTCCATTAAGTTTTCTTCTCTTCATTTGATTATATTGAATAAAAGTAGAAGAAAATATTAGCAACAACATACCCGGTGAAATCCCAAAAAGCGGGGTCTTGTGAGGATAGCATGGGTAGAGTGTACGCTATCCTTACCACTACCTCGTGGAGGCAGAGAGACTATTTTTAAAAGACCCTTGGTCAAGTGCATCAACCCAAATAACAAAATAAGAAAGCAATGGAGAAAGAGGAACAAATAATAAGAAAAGCAGTGTAAAGTCTACAATACCAACAACAAAATTGTGTGATGATCGAAAATACAATAAACAACATAGGACAAGAACCACAAGGGCATGACTAGTCCTATGAAACACTGTAAAGTCTAAATCTTTATAAGGCAAGGCAACACTCTACCCTTACTAACCTTCTACCCTAATATGCTATCACCATTCCTTTCTGTCTAAGGTGATGTCCTCGGTAATATGAAGTTGCGGAATATCCTGACTACTCACCTCTCCTCGATACTTTTTCGGCTTACCCCTACCCCTGTGCGTATTCCTTACAATCAGCTCTCGCACCTCCTCTGTACTGGGGCGTCAGTGCAGTTTTTCTGCACATATCAAAACCATCTCAGTCTCCCTTTCCTCATTTTGCCCGTCACAGAGGCACACCCACCTTCTCCGGATTACCTCATCCTAATCTTGTCACTTTTAATATGCCCACACATTCATCTCTACATCGTCATCTTCAAAACATACATTTTTTGAATATGTGATTTCTTGACGGACCAACACTCAAACTCATACGACAAGGACGGTCTAATCACCACTTTGTAAAACTTATCTTTAAGTTTAGGTGGTACCTTCTTATCGCACAAGTCCAAAGGCAAGCCACTTTTTCATACATGCCGCTCCATTGTGATGTGTGACATCATCATCATGTCCCCACTACCCTGGAGGCAGACCCGAGGTATTTAAAATTCTCTCTTCGGAATAGACTGTGTGGCAAGCCTCACTTCCACATCCACTTCATCCAATGCAACACTGAAGTTACAATCCAAATATTCCGTTTGGTCCTGCTCAACCCGAACCCTTTAGACTTCAGATAAGTTAAATATAAATAACAATTAAAAAGTGTGCCTATCAGCCAGATAAGTTAGTGAAAAAACATAGATTAGTTTTGATATTTTTTTCTTATATTAAATATCCTTTATAGTATTTCCAATTTATGCTTAATACTTTTTATGTGTATCATATTTCAGAAATTGTAAATTTAAAACATCGAAGGCAAAATTAGCAAGCCATCACAGTTTGGAGTCATAATCAAATCAGAAGAAAATAAATACGTACTCAGTCACTAATTAAAATCACAAAAGAATTGTGCGTTGATTCAACTGAATTCATCACCTATGATTCTAAACTAGGGCTAAAGGAGAGTTGGTGGTATGAAAGAATGAATAAGAAAAGTAAAGAAAATTAAAAAGAAAAACTAAAGGCTTAAGAAAAAAAAAGAATAGGAAAAGGCTGGTAGCGTAAAACCCAGTAAAAAAAAAAATTAGAAGACCACCACCACCACCACAACAACAACATCAACTTACTCTGTGTAATTCCACAAGTGGGGTATGGGGAGAGTTAGGATGTACGCGGATGGTAAAAAAAAAGGAAAAAATAACAAGGAAGTCTGAAGTGGGAAAGTTAGGAGACTAGAGTCAAATTTACTTGAAGTAAAATTAAGTGCATTGAGGGGGATTTCAACTTTGGTTGCAAAGACGAGGACTTGCAAAAAGATTTCTCAACTAGACCACAACACATTCTGCACTTTCAGATGCCTTTGTTTTCATGTCTATTTCATGTTGATATTACATGTATATACAAAGTTTTTCTCAAAGTCTATTGGGAAGGTGGACAATGTAGGCCCCCCCTCTTGTCATTATGCCGGTTCATGTTTGCCAATGATAATTTTTTTCCTATTTGGGAAAGAAACAACAACATACTCCGTGAAACTTTTCTAGTTGGGAAAGTAAAGGATAAAAATAAAAGCAAAAGGTGTGTTGACACTTGAATATATTTTGGAGAATTTATTGGTTTTATGGCGACTGTTTTTGCAAAAATCTTTTCTATTCATATGGCCCTTGATCCAGCAAGGTACTTCTTATTTTCTTCTTACTCCTTTTTAAGCATTTCATCCGACAATTGATATTTATCCATTTATGCTTTTCTATTGCCCAATGCTGTGTTTGCTGCATAGATTCCATGCCATAATGTATTTGCCTAACTGAAGTCAGAGTAATAATTGGAAGAAAAAGCTGTTGGTGATGCTAGAAACTCAAATAGGCTCCCTGTTAGTGCTTAGTGTTTTTAAATGCAGAAACTACACCAGAATCCTGTGGAGCTTTAAGTACAAAGAGCAACTAAACGAGCGGTTTTAGTGAAGACACAAATTAAGGAAGAAACAGAGTTATGATGTAATACAAGCAGAACAACTGTAACAAAAAACAACAATTTTACACAATGGAATTGAAAAACTTCAAAACTTGACATGTAGGAAGTAAAAATCACGTCTATATGCCCTTATCAGAAAAAAATTAGTAAAAGAAAGCATGTCGATGTTAAGAAACCATTTTAAAATTATGTTTCCAGTTGCAGAAAATGAAATTTTTCTAATTTAAATATAGTGCTTGGTTTTCCTCTATATTTCCAATTCCAATTCTTTATCACTAATGTATTTAATTATGACTTTTATATAGAAATTAATAAGACACTTTACCAGCTGTATGCATTGTTTAGTGCTGCCTTAATTAGGTCAAGCTCTTGATTAACAAGACCCATATAAGCTAAGTTGTTCAGACTCTCCAAAAATGTCGGCCGCACCCGTGTCGGATCCTTCAAAAATACACTGTTTTTGGAGGATTTGACACACACTGGTCAACATTTTTGAAGAGTCCGAGCAACATAACATATAAGTGCTTTGGTTCCTGCAGTAGAACACCATGTGAGCAGGGGAATGCATGACCTGCACCTAGCTTTAGGGTTTAAATGCTCTGTAAATGAGCTCAACAACACTATTTGGTTTCTGAAAATCAAAAGTTAAGTGACATCTAGAATTTAGTAATAATTCCAAATTTGTAATACTGATGAGAGGATACATTCTACGGTGTTTTACACTATTTGAATCATACTGTGCTGTTAGCTTATGTGTAGTGGTAAGCTTGATTAAAGAAGTAGGGACTGGGCACAGGATTCCTTATTTACCTACCCAGACAACTACATATGTTTGGAAGAAGAATTTATTAACTCATTAGCTGACGCCTTTTGCAATGAAGACTTCCTCTCTAGTTGGCATTCTCATTTGAAGCTGCAATTTGTTTTTCCCTCTGTCTGACTGTCTCTTGTAAGCTTATGGAAAAATCGGAACCTTTACTCTTTTGTTTTTCTTTGCAGAGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTACTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAGACTGAAAGGTAAAATCCAAAGCCTTGAAGAACAGGCAAATTCCTTCAGTGAGAAGAGTTCAAAATATGGACAAATTGCTGCT</genome_strand>
        <mrna_strand>TCGCTTCAATAAAACCCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTTATAGGCATGACAGAATTGCAGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACAAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGTAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTACTCTACCNAGCCCAGCAACTTCACTATGACAGTGCAACCATGGTTATGAGACTGAAAGCTAAAATCC-AAG-CTTGAAGAACAGGCAAATTCCTTCAGTGAGAAGAGTTC-AAATATGGAC-AATTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320871" ref_strand="+" ref_description="SGN-E320871 [cTOB-27-D18]">
      <seq>tcgcttcaataaaacccaaatcttcaattcaaccaaattcttcgatttcccacttttgggtgccacaatatactgtgactgaagaagtcactgtaccgcagatttactcgaaattatttgtattcagtagtcgccggaaaaatgagacggaggaactcggatttccggcggccggtgaggcggcgattctccaatgttttttggttaactttgtgtggattggtcgtattgctgctcattattttgctcagcagaacaactcgcgattcatcgtctagattggtttatacaaagagaccttataggcatgacagaattgcagatggtctcaacattactgaagaaatgctgaggcctgaatcgatgacaagacaaattaatgatcagatttctcttgcaaaagcaattcttgtaattgcaaaagaaagcaacaaccttcaatttgcatgggaactaagtgctcaaatccgtaactcacagatgcttctttctaatgctgcttcaagaagaagccccttgacaaacggagaatcagaaagtgcaattcgagatatggcacttctactctaccaacccagcaacttcactatgacagtgcaaccatgtttatgagactgaaagctaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="44233" stop="52341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44533" g_stop="44826" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51706" g_stop="52041" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="629" r_length="335" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E320871" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44533" e_stop="44826"/>
          <exon e_start="51706" e_stop="52041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTCAATAAAACCCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAGGTAATGTTCGTTTTCGTTGTATTATAAATTGCTGTTGTTTTCTGTTTCTAAGCTAAATATTCTTTTTTAAGCTAGATGAGTTTGTGTGGGTTGTGGAATTTGAGCTTTGCGGGTTAGTCAATTACTTGTTAATGTATTTGACATGGACAAACTGAAATGATTGTTGACATTTGCGATCTAACAGTTTGCAGTAGTATGCAATCAGTCTAAGAGTTAACTCTGAATTTCCATTTTAGAGTTCTTGTCAAAATTTACACAGATCCAAACTCACTATCTCATAAACCATAGACTAAAGCTGAATTGTAGATAAAAAATAAGCGAAACTCAATAAGGGAAGTCTGTGCAATGTGAGCTCTAGGTTTATGAACTTTACAAGGCTATATGCTTACACTTGTGTGTGCTATTCACAGAATCTACTAACAAACTATTTTTAGTTAACTACTGGCTAGCCTCCTTATAACAAAGTAACTGGCCATTAAACAATAATTAATCACCTAACTACAAGCTAACTACAACAACAACCAAAGTTAAGTTGCACCACTGTCAATAGTCTCTACCTTTTGTTTTAGATCCTTATTTAGATAGATTTTGATTTTTAATCCAAGTGTTAGCCTTTCCTTTCAATATTATCTCTTAGGTGAGTGTACAACCAATTCACTAAATCTAGTTAATATGTTGTACAGTCGTTAGGTGTAATTTTCATTGCATTTATTGGTTAATAATGGTCATTTTGGTTTGAGAATTGGCAACTAAGGCACATACAGATCTTTTGAAACAAAAAGGGCAAGTTGGAAATTTCTGAAACTTCTTATGAAATTATTTCTATGTCCAAAAGCAGTTTATGCCCGGTTTAATTATTGTTATCCTTTTAAACAGCTAAAAGTACTATGAAGCTTTCTTTCTTTCAAAGATATGTTCCAAGTGAATTTAAAGTAATTGTTTCTTGTCGAAGAACACCTAATTCTTTGAGAATATGTATCAAACTTTTCACCTATTTGGTAATGGCCCATTCCCAGGTCCTTGATCACCGGTATTTTGTTTCCCGACAACAAACTTCTAAAGGATAATTGTAGTCAACTTTTTTTTCCTATTACTTATGGATATTATTGCTATGGGGTAAGTGTCAATAAGTACATTGCTCGACAAATGTCACAAGATCTCCACTGTGCATTGATTAATCAGAAGAGATTATGACTACATTTAGCATTTTGGAGTGAGTCTATAGCTGGGCTTGTGAAATAATTTGACGTTTTTTGGTTACCATGAGCAGTAGTTATTGATTTTGGAAAAATACTTTAATGCTAAAAGAAATCTTGTACAGTAGTAACAGTGTCTGAAAGTATCTGGGCTACTTTGGGGCCTGGAACTAATATCTTTATTTTTTTGGGATTAGGCTATCAAGATGAAATTCATGGTATTGATGGATAAACAAATTTGGTCAAATTAAAGAAACAAAAAGATAGGTTTATTCTTGTTTATGACTTGAGGGTATCGTGAAGATCTGTCATATTAATGCCCTCAGCCTCAAGTAAATCTGCTTCAAAGATGATAAAGATAGCAAATAGAAAAGGAAAAGTTAAGCATCCGAGTCTAAGACATGGAAGAATACCGTAGTCCCTTCCTCCCAAATTTAAGCTTTTGGGAACATTGAGGTGTCCACACTTGGTGGGAAGTTCATAAACTGATCATTTCATATTACACTACCCCATGTCTTATGAAAGAATTAAATGAAACCAAGAGAAATCTGATCAACATGTAGTTTATTGTGGCCTCCACATTTTTCTAGTTTAGCATTAAACAATGTGGTACAATTTGATTATTGTTCAAGTACCTCCATCAAGCTGTGGCAGTCAAAGACAAAGTACAGAGTGGCTCGATCTAGAAGCGTCTTAATAAAAGCCTAGATATTCTTCACGGAATTAACAAAATCAATAGAATACAAAGTATGTATAAAGAAAATAGGTTCCATATAAGTTATGCTGGGAGTTGGGAAAACTTAAAAATTATTTAGGGGCACATGGAAGTAATTAATAGATGAAGGACATAAAAAATATCAATTATACAAGACATACCATAGTTACTTGTCTTCCTTGTGGTCTACGTTGTAATTTGCTAATCTTATTGAATGTCTCAAAGGAACCAAGAATGCAGGGTACCCTTTTCGAAAATTAAGAATGTAGAGTTACATAATATATATTTTAGAAGCAATCAATGTAAAATTGTACCCCTCTGTCCCAATTTGTGAGACACACTAATTTTTTTAGTTTGTCCCAAAAAAGAATGTCACTTTTTATAGCAAAAATAACTTAACATTGAAATTCCCCTTTTACCCTTAATGAAATAATTTATTGCCACACAAATATCTAAGATTTATTTTGGATCACAAATTTTATAAGTCACCTTTCTTTCTTAAACTTGTGTCAAGCCACGCGGTGCTACATAAATTGGGACGGAGGGAGTAAAACATAATTCCTACCTTAGAACATAGGTAATTGGAAAAGAATTCTTCTAACAAATTGAATAATTTATGTAAGCTGAGGACACAAATATTGCTTTTTGAGGTGATCCAGATAAAATGGGGAGGTTTCTGTTATCTGTAGATAACAATGTGGTTCTAAGAGTAGCTGAAAACACTCTGGTATTACTCAACACAGATTTCACCTTTATTCTGGAGTGGTCAATATGGGAAGGTCAAAAAGATTCGGTGAAGTAGTTTTTTTTCTGCTTTTTGAATGATCTACGATATTTTTAAAAAGAAGATAGGAACAGTCTTGGTGGCAGAGGTGTATCCCAGAAGGGGTCACTCGGTTCACTTGAACCCATGCTTCCCTCCTGAAATCATATATAGTAGTGTTATATTTTTTTTAAAAATATTTAAATATAGATACGTGAACCCATAGTTGAAGTATCATACCATGCGATTATGGTTGGGTGCAACTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATTTCTCTTGTTTTATTTTCCTTTTAAAAATTGGATAACGCTTCTCTAAGTGGTTTGGATAGGTAAAAGTAATTTTGGATCTATAATTTTTAAATTCTAATTATTTTTAGTGATAAGAACCTAAATTTTAAACCGATCAACTTCATATCTTAGATCCAACTGTTCGTAATAGTGTACCCATTATCTCAAAATTCTGGATACGCCTCAGCAGTTGGTGGTTCAGCTCAACTGTACTTCACTCAACTTTCTCCCAAGCAAAAATTTGTTTCTCAAAAATAAAATAAAATCCAAGATTTGCTCTTACGTCATTATGAGTGGTTGACCCATGATTTAAAGACCACATTTGCATCATGCATTAATGTAGGATCTGTCATTGGATTTTTATAATAAGGAATTTTCAGTCAGTTGGTTGGTTCAAAATTAGATTCAGATTGGTGTAATAGATTTTGATATAAAAACCAACTGATTAACAGGCCAAAGTTATTTCATTCCATTAAGTTTTCTTCTCTTCATTTGATTATATTGAATAAAAGTAGAAGAAAATATTAGCAACAACATACCCGGTGAAATCCCAAAAAGCGGGGTCTTGTGAGGATAGCATGGGTAGAGTGTACGCTATCCTTACCACTACCTCGTGGAGGCAGAGAGACTATTTTTAAAAGACCCTTGGTCAAGTGCATCAACCCAAATAACAAAATAAGAAAGCAATGGAGAAAGAGGAACAAATAATAAGAAAAGCAGTGTAAAGTCTACAATACCAACAACAAAATTGTGTGATGATCGAAAATACAATAAACAACATAGGACAAGAACCACAAGGGCATGACTAGTCCTATGAAACACTGTAAAGTCTAAATCTTTATAAGGCAAGGCAACACTCTACCCTTACTAACCTTCTACCCTAATATGCTATCACCATTCCTTTCTGTCTAAGGTGATGTCCTCGGTAATATGAAGTTGCGGAATATCCTGACTACTCACCTCTCCTCGATACTTTTTCGGCTTACCCCTACCCCTGTGCGTATTCCTTACAATCAGCTCTCGCACCTCCTCTGTACTGGGGCGTCAGTGCAGTTTTTCTGCACATATCAAAACCATCTCAGTCTCCCTTTCCTCATTTTGCCCGTCACAGAGGCACACCCACCTTCTCCGGATTACCTCATCCTAATCTTGTCACTTTTAATATGCCCACACATTCATCTCTACATCGTCATCTTCAAAACATACATTTTTTGAATATGTGATTTCTTGACGGACCAACACTCAAACTCATACGACAAGGACGGTCTAATCACCACTTTGTAAAACTTATCTTTAAGTTTAGGTGGTACCTTCTTATCGCACAAGTCCAAAGGCAAGCCACTTTTTCATACATGCCGCTCCATTGTGATGTGTGACATCATCATCATGTCCCCACTACCCTGGAGGCAGACCCGAGGTATTTAAAATTCTCTCTTCGGAATAGACTGTGTGGCAAGCCTCACTTCCACATCCACTTCATCCAATGCAACACTGAAGTTACAATCCAAATATTCCGTTTGGTCCTGCTCAACCCGAACCCTTTAGACTTCAGATAAGTTAAATATAAATAACAATTAAAAAGTGTGCCTATCAGCCAGATAAGTTAGTGAAAAAACATAGATTAGTTTTGATATTTTTTTCTTATATTAAATATCCTTTATAGTATTTCCAATTTATGCTTAATACTTTTTATGTGTATCATATTTCAGAAATTGTAAATTTAAAACATCGAAGGCAAAATTAGCAAGCCATCACAGTTTGGAGTCATAATCAAATCAGAAGAAAATAAATACGTACTCAGTCACTAATTAAAATCACAAAAGAATTGTGCGTTGATTCAACTGAATTCATCACCTATGATTCTAAACTAGGGCTAAAGGAGAGTTGGTGGTATGAAAGAATGAATAAGAAAAGTAAAGAAAATTAAAAAGAAAAACTAAAGGCTTAAGAAAAAAAAAGAATAGGAAAAGGCTGGTAGCGTAAAACCCAGTAAAAAAAAAAATTAGAAGACCACCACCACCACCACAACAACAACATCAACTTACTCTGTGTAATTCCACAAGTGGGGTATGGGGAGAGTTAGGATGTACGCGGATGGTAAAAAAAAAGGAAAAAATAACAAGGAAGTCTGAAGTGGGAAAGTTAGGAGACTAGAGTCAAATTTACTTGAAGTAAAATTAAGTGCATTGAGGGGGATTTCAACTTTGGTTGCAAAGACGAGGACTTGCAAAAAGATTTCTCAACTAGACCACAACACATTCTGCACTTTCAGATGCCTTTGTTTTCATGTCTATTTCATGTTGATATTACATGTATATACAAAGTTTTTCTCAAAGTCTATTGGGAAGGTGGACAATGTAGGCCCCCCCTCTTGTCATTATGCCGGTTCATGTTTGCCAATGATAATTTTTTTCCTATTTGGGAAAGAAACAACAACATACTCCGTGAAACTTTTCTAGTTGGGAAAGTAAAGGATAAAAATAAAAGCAAAAGGTGTGTTGACACTTGAATATATTTTGGAGAATTTATTGGTTTTATGGCGACTGTTTTTGCAAAAATCTTTTCTATTCATATGGCCCTTGATCCAGCAAGGTACTTCTTATTTTCTTCTTACTCCTTTTTAAGCATTTCATCCGACAATTGATATTTATCCATTTATGCTTTTCTATTGCCCAATGCTGTGTTTGCTGCATAGATTCCATGCCATAATGTATTTGCCTAACTGAAGTCAGAGTAATAATTGGAAGAAAAAGCTGTTGGTGATGCTAGAAACTCAAATAGGCTCCCTGTTAGTGCTTAGTGTTTTTAAATGCAGAAACTACACCAGAATCCTGTGGAGCTTTAAGTACAAAGAGCAACTAAACGAGCGGTTTTAGTGAAGACACAAATTAAGGAAGAAACAGAGTTATGATGTAATACAAGCAGAACAACTGTAACAAAAAACAACAATTTTACACAATGGAATTGAAAAACTTCAAAACTTGACATGTAGGAAGTAAAAATCACGTCTATATGCCCTTATCAGAAAAAAATTAGTAAAAGAAAGCATGTCGATGTTAAGAAACCATTTTAAAATTATGTTTCCAGTTGCAGAAAATGAAATTTTTCTAATTTAAATATAGTGCTTGGTTTTCCTCTATATTTCCAATTCCAATTCTTTATCACTAATGTATTTAATTATGACTTTTATATAGAAATTAATAAGACACTTTACCAGCTGTATGCATTGTTTAGTGCTGCCTTAATTAGGTCAAGCTCTTGATTAACAAGACCCATATAAGCTAAGTTGTTCAGACTCTCCAAAAATGTCGGCCGCACCCGTGTCGGATCCTTCAAAAATACACTGTTTTTGGAGGATTTGACACACACTGGTCAACATTTTTGAAGAGTCCGAGCAACATAACATATAAGTGCTTTGGTTCCTGCAGTAGAACACCATGTGAGCAGGGGAATGCATGACCTGCACCTAGCTTTAGGGTTTAAATGCTCTGTAAATGAGCTCAACAACACTATTTGGTTTCTGAAAATCAAAAGTTAAGTGACATCTAGAATTTAGTAATAATTCCAAATTTGTAATACTGATGAGAGGATACATTCTACGGTGTTTTACACTATTTGAATCATACTGTGCTGTTAGCTTATGTGTAGTGGTAAGCTTGATTAAAGAAGTAGGGACTGGGCACAGGATTCCTTATTTACCTACCCAGACAACTACATATGTTTGGAAGAAGAATTTATTAACTCATTAGCTGACGCCTTTTGCAATGAAGACTTCCTCTCTAGTTGGCATTCTCATTTGAAGCTGCAATTTGTTTTTCCCTCTGTCTGACTGTCTCTTGTAAGCTTATGGAAAAATCGGAACCTTTACTCTTTTGTTTTTCTTTGCAGAGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTACTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAGACTGAAAGGTAAAATC</genome_strand>
        <mrna_strand>TCGCTTCAATAAAACCCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTTATAGGCATGACAGAATTGCAGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACAAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGTAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTACTCTACCAA-CCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAGACTGAAAGCTAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266959" ref_strand="+" ref_description="SGN-E266959 [cLEI-7-J19]">
      <seq>tcaataagacccaaatcttcaattcaaccaaattcttcgatttcccacttttgggtgccacaatatactgtgactgaagaaatcactgtaccgcagatttactcgaaattatttgtattcagtagtcgccggaaaaatgagacggaggaactcggatttccggcggccggtgaggcggcgattctccaatgttttttggataactctgtgtggattgatcgtattgctgctaattattttgctcagcagaacaactcgcgattcatcgtctagattggtttatacaaagagaccttataggcatgacagaattgcagatggtctcaacattactgaagaaatgctgaggcctgaatcgatgacaagacaaattaatgatcagatttctcttgcaaaagcaattcttggaattgcaaaagaaagcagcagccttcaatctgcatgggaactaagtgctcaaatacgtaactcacagatgcttctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="44238" stop="52202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44538" g_stop="44826" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51706" g_stop="51902" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="486" r_length="197" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E266959" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44538" e_stop="44826"/>
          <exon e_start="51706" e_stop="51902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATAAAACCCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAGGTAATGTTCGTTTTCGTTGTATTATAAATTGCTGTTGTTTTCTGTTTCTAAGCTAAATATTCTTTTTTAAGCTAGATGAGTTTGTGTGGGTTGTGGAATTTGAGCTTTGCGGGTTAGTCAATTACTTGTTAATGTATTTGACATGGACAAACTGAAATGATTGTTGACATTTGCGATCTAACAGTTTGCAGTAGTATGCAATCAGTCTAAGAGTTAACTCTGAATTTCCATTTTAGAGTTCTTGTCAAAATTTACACAGATCCAAACTCACTATCTCATAAACCATAGACTAAAGCTGAATTGTAGATAAAAAATAAGCGAAACTCAATAAGGGAAGTCTGTGCAATGTGAGCTCTAGGTTTATGAACTTTACAAGGCTATATGCTTACACTTGTGTGTGCTATTCACAGAATCTACTAACAAACTATTTTTAGTTAACTACTGGCTAGCCTCCTTATAACAAAGTAACTGGCCATTAAACAATAATTAATCACCTAACTACAAGCTAACTACAACAACAACCAAAGTTAAGTTGCACCACTGTCAATAGTCTCTACCTTTTGTTTTAGATCCTTATTTAGATAGATTTTGATTTTTAATCCAAGTGTTAGCCTTTCCTTTCAATATTATCTCTTAGGTGAGTGTACAACCAATTCACTAAATCTAGTTAATATGTTGTACAGTCGTTAGGTGTAATTTTCATTGCATTTATTGGTTAATAATGGTCATTTTGGTTTGAGAATTGGCAACTAAGGCACATACAGATCTTTTGAAACAAAAAGGGCAAGTTGGAAATTTCTGAAACTTCTTATGAAATTATTTCTATGTCCAAAAGCAGTTTATGCCCGGTTTAATTATTGTTATCCTTTTAAACAGCTAAAAGTACTATGAAGCTTTCTTTCTTTCAAAGATATGTTCCAAGTGAATTTAAAGTAATTGTTTCTTGTCGAAGAACACCTAATTCTTTGAGAATATGTATCAAACTTTTCACCTATTTGGTAATGGCCCATTCCCAGGTCCTTGATCACCGGTATTTTGTTTCCCGACAACAAACTTCTAAAGGATAATTGTAGTCAACTTTTTTTTCCTATTACTTATGGATATTATTGCTATGGGGTAAGTGTCAATAAGTACATTGCTCGACAAATGTCACAAGATCTCCACTGTGCATTGATTAATCAGAAGAGATTATGACTACATTTAGCATTTTGGAGTGAGTCTATAGCTGGGCTTGTGAAATAATTTGACGTTTTTTGGTTACCATGAGCAGTAGTTATTGATTTTGGAAAAATACTTTAATGCTAAAAGAAATCTTGTACAGTAGTAACAGTGTCTGAAAGTATCTGGGCTACTTTGGGGCCTGGAACTAATATCTTTATTTTTTTGGGATTAGGCTATCAAGATGAAATTCATGGTATTGATGGATAAACAAATTTGGTCAAATTAAAGAAACAAAAAGATAGGTTTATTCTTGTTTATGACTTGAGGGTATCGTGAAGATCTGTCATATTAATGCCCTCAGCCTCAAGTAAATCTGCTTCAAAGATGATAAAGATAGCAAATAGAAAAGGAAAAGTTAAGCATCCGAGTCTAAGACATGGAAGAATACCGTAGTCCCTTCCTCCCAAATTTAAGCTTTTGGGAACATTGAGGTGTCCACACTTGGTGGGAAGTTCATAAACTGATCATTTCATATTACACTACCCCATGTCTTATGAAAGAATTAAATGAAACCAAGAGAAATCTGATCAACATGTAGTTTATTGTGGCCTCCACATTTTTCTAGTTTAGCATTAAACAATGTGGTACAATTTGATTATTGTTCAAGTACCTCCATCAAGCTGTGGCAGTCAAAGACAAAGTACAGAGTGGCTCGATCTAGAAGCGTCTTAATAAAAGCCTAGATATTCTTCACGGAATTAACAAAATCAATAGAATACAAAGTATGTATAAAGAAAATAGGTTCCATATAAGTTATGCTGGGAGTTGGGAAAACTTAAAAATTATTTAGGGGCACATGGAAGTAATTAATAGATGAAGGACATAAAAAATATCAATTATACAAGACATACCATAGTTACTTGTCTTCCTTGTGGTCTACGTTGTAATTTGCTAATCTTATTGAATGTCTCAAAGGAACCAAGAATGCAGGGTACCCTTTTCGAAAATTAAGAATGTAGAGTTACATAATATATATTTTAGAAGCAATCAATGTAAAATTGTACCCCTCTGTCCCAATTTGTGAGACACACTAATTTTTTTAGTTTGTCCCAAAAAAGAATGTCACTTTTTATAGCAAAAATAACTTAACATTGAAATTCCCCTTTTACCCTTAATGAAATAATTTATTGCCACACAAATATCTAAGATTTATTTTGGATCACAAATTTTATAAGTCACCTTTCTTTCTTAAACTTGTGTCAAGCCACGCGGTGCTACATAAATTGGGACGGAGGGAGTAAAACATAATTCCTACCTTAGAACATAGGTAATTGGAAAAGAATTCTTCTAACAAATTGAATAATTTATGTAAGCTGAGGACACAAATATTGCTTTTTGAGGTGATCCAGATAAAATGGGGAGGTTTCTGTTATCTGTAGATAACAATGTGGTTCTAAGAGTAGCTGAAAACACTCTGGTATTACTCAACACAGATTTCACCTTTATTCTGGAGTGGTCAATATGGGAAGGTCAAAAAGATTCGGTGAAGTAGTTTTTTTTCTGCTTTTTGAATGATCTACGATATTTTTAAAAAGAAGATAGGAACAGTCTTGGTGGCAGAGGTGTATCCCAGAAGGGGTCACTCGGTTCACTTGAACCCATGCTTCCCTCCTGAAATCATATATAGTAGTGTTATATTTTTTTTAAAAATATTTAAATATAGATACGTGAACCCATAGTTGAAGTATCATACCATGCGATTATGGTTGGGTGCAACTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATTTCTCTTGTTTTATTTTCCTTTTAAAAATTGGATAACGCTTCTCTAAGTGGTTTGGATAGGTAAAAGTAATTTTGGATCTATAATTTTTAAATTCTAATTATTTTTAGTGATAAGAACCTAAATTTTAAACCGATCAACTTCATATCTTAGATCCAACTGTTCGTAATAGTGTACCCATTATCTCAAAATTCTGGATACGCCTCAGCAGTTGGTGGTTCAGCTCAACTGTACTTCACTCAACTTTCTCCCAAGCAAAAATTTGTTTCTCAAAAATAAAATAAAATCCAAGATTTGCTCTTACGTCATTATGAGTGGTTGACCCATGATTTAAAGACCACATTTGCATCATGCATTAATGTAGGATCTGTCATTGGATTTTTATAATAAGGAATTTTCAGTCAGTTGGTTGGTTCAAAATTAGATTCAGATTGGTGTAATAGATTTTGATATAAAAACCAACTGATTAACAGGCCAAAGTTATTTCATTCCATTAAGTTTTCTTCTCTTCATTTGATTATATTGAATAAAAGTAGAAGAAAATATTAGCAACAACATACCCGGTGAAATCCCAAAAAGCGGGGTCTTGTGAGGATAGCATGGGTAGAGTGTACGCTATCCTTACCACTACCTCGTGGAGGCAGAGAGACTATTTTTAAAAGACCCTTGGTCAAGTGCATCAACCCAAATAACAAAATAAGAAAGCAATGGAGAAAGAGGAACAAATAATAAGAAAAGCAGTGTAAAGTCTACAATACCAACAACAAAATTGTGTGATGATCGAAAATACAATAAACAACATAGGACAAGAACCACAAGGGCATGACTAGTCCTATGAAACACTGTAAAGTCTAAATCTTTATAAGGCAAGGCAACACTCTACCCTTACTAACCTTCTACCCTAATATGCTATCACCATTCCTTTCTGTCTAAGGTGATGTCCTCGGTAATATGAAGTTGCGGAATATCCTGACTACTCACCTCTCCTCGATACTTTTTCGGCTTACCCCTACCCCTGTGCGTATTCCTTACAATCAGCTCTCGCACCTCCTCTGTACTGGGGCGTCAGTGCAGTTTTTCTGCACATATCAAAACCATCTCAGTCTCCCTTTCCTCATTTTGCCCGTCACAGAGGCACACCCACCTTCTCCGGATTACCTCATCCTAATCTTGTCACTTTTAATATGCCCACACATTCATCTCTACATCGTCATCTTCAAAACATACATTTTTTGAATATGTGATTTCTTGACGGACCAACACTCAAACTCATACGACAAGGACGGTCTAATCACCACTTTGTAAAACTTATCTTTAAGTTTAGGTGGTACCTTCTTATCGCACAAGTCCAAAGGCAAGCCACTTTTTCATACATGCCGCTCCATTGTGATGTGTGACATCATCATCATGTCCCCACTACCCTGGAGGCAGACCCGAGGTATTTAAAATTCTCTCTTCGGAATAGACTGTGTGGCAAGCCTCACTTCCACATCCACTTCATCCAATGCAACACTGAAGTTACAATCCAAATATTCCGTTTGGTCCTGCTCAACCCGAACCCTTTAGACTTCAGATAAGTTAAATATAAATAACAATTAAAAAGTGTGCCTATCAGCCAGATAAGTTAGTGAAAAAACATAGATTAGTTTTGATATTTTTTTCTTATATTAAATATCCTTTATAGTATTTCCAATTTATGCTTAATACTTTTTATGTGTATCATATTTCAGAAATTGTAAATTTAAAACATCGAAGGCAAAATTAGCAAGCCATCACAGTTTGGAGTCATAATCAAATCAGAAGAAAATAAATACGTACTCAGTCACTAATTAAAATCACAAAAGAATTGTGCGTTGATTCAACTGAATTCATCACCTATGATTCTAAACTAGGGCTAAAGGAGAGTTGGTGGTATGAAAGAATGAATAAGAAAAGTAAAGAAAATTAAAAAGAAAAACTAAAGGCTTAAGAAAAAAAAAGAATAGGAAAAGGCTGGTAGCGTAAAACCCAGTAAAAAAAAAAATTAGAAGACCACCACCACCACCACAACAACAACATCAACTTACTCTGTGTAATTCCACAAGTGGGGTATGGGGAGAGTTAGGATGTACGCGGATGGTAAAAAAAAAGGAAAAAATAACAAGGAAGTCTGAAGTGGGAAAGTTAGGAGACTAGAGTCAAATTTACTTGAAGTAAAATTAAGTGCATTGAGGGGGATTTCAACTTTGGTTGCAAAGACGAGGACTTGCAAAAAGATTTCTCAACTAGACCACAACACATTCTGCACTTTCAGATGCCTTTGTTTTCATGTCTATTTCATGTTGATATTACATGTATATACAAAGTTTTTCTCAAAGTCTATTGGGAAGGTGGACAATGTAGGCCCCCCCTCTTGTCATTATGCCGGTTCATGTTTGCCAATGATAATTTTTTTCCTATTTGGGAAAGAAACAACAACATACTCCGTGAAACTTTTCTAGTTGGGAAAGTAAAGGATAAAAATAAAAGCAAAAGGTGTGTTGACACTTGAATATATTTTGGAGAATTTATTGGTTTTATGGCGACTGTTTTTGCAAAAATCTTTTCTATTCATATGGCCCTTGATCCAGCAAGGTACTTCTTATTTTCTTCTTACTCCTTTTTAAGCATTTCATCCGACAATTGATATTTATCCATTTATGCTTTTCTATTGCCCAATGCTGTGTTTGCTGCATAGATTCCATGCCATAATGTATTTGCCTAACTGAAGTCAGAGTAATAATTGGAAGAAAAAGCTGTTGGTGATGCTAGAAACTCAAATAGGCTCCCTGTTAGTGCTTAGTGTTTTTAAATGCAGAAACTACACCAGAATCCTGTGGAGCTTTAAGTACAAAGAGCAACTAAACGAGCGGTTTTAGTGAAGACACAAATTAAGGAAGAAACAGAGTTATGATGTAATACAAGCAGAACAACTGTAACAAAAAACAACAATTTTACACAATGGAATTGAAAAACTTCAAAACTTGACATGTAGGAAGTAAAAATCACGTCTATATGCCCTTATCAGAAAAAAATTAGTAAAAGAAAGCATGTCGATGTTAAGAAACCATTTTAAAATTATGTTTCCAGTTGCAGAAAATGAAATTTTTCTAATTTAAATATAGTGCTTGGTTTTCCTCTATATTTCCAATTCCAATTCTTTATCACTAATGTATTTAATTATGACTTTTATATAGAAATTAATAAGACACTTTACCAGCTGTATGCATTGTTTAGTGCTGCCTTAATTAGGTCAAGCTCTTGATTAACAAGACCCATATAAGCTAAGTTGTTCAGACTCTCCAAAAATGTCGGCCGCACCCGTGTCGGATCCTTCAAAAATACACTGTTTTTGGAGGATTTGACACACACTGGTCAACATTTTTGAAGAGTCCGAGCAACATAACATATAAGTGCTTTGGTTCCTGCAGTAGAACACCATGTGAGCAGGGGAATGCATGACCTGCACCTAGCTTTAGGGTTTAAATGCTCTGTAAATGAGCTCAACAACACTATTTGGTTTCTGAAAATCAAAAGTTAAGTGACATCTAGAATTTAGTAATAATTCCAAATTTGTAATACTGATGAGAGGATACATTCTACGGTGTTTTACACTATTTGAATCATACTGTGCTGTTAGCTTATGTGTAGTGGTAAGCTTGATTAAAGAAGTAGGGACTGGGCACAGGATTCCTTATTTACCTACCCAGACAACTACATATGTTTGGAAGAAGAATTTATTAACTCATTAGCTGACGCCTTTTGCAATGAAGACTTCCTCTCTAGTTGGCATTCTCATTTGAAGCTGCAATTTGTTTTTCCCTCTGTCTGACTGTCTCTTGTAAGCTTATGGAAAAATCGGAACCTTTACTCTTTTGTTTTTCTTTGCAGAGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTC</genome_strand>
        <mrna_strand>TCAATAAGACCCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAATCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGATAACTCTGTGTGGATTGATCGTATTGCTGCTAATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTTATAGGCATGACAGAATTGCAGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACAAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGGAATTGCAAAAGAAAGCAGCAGCCTTCAATCTGCATGGGAACTAAGTGCTCAAATACGTAACTCACAGATGCTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265553" ref_strand="+" ref_description="SGN-E265553 [cLEI-14-N5]">
      <seq>ccaaatcttcaattcaaccaaattcttcgatttcccacttttgggtgccacaatatactgtgactgaagaagtcactgtaccgcagatttactcgaaattatttgtattcagtagtcgccggaaaaatgagacggaggaactcggatttccggcggccggtgaggcggcgattctccaatgttttttggttaactttgtgtggattggtcgtattgctgctcattattttgctcagcagaacaactcgcgattcatcgtctagattggtttatacaaagagaccttataggcatgacagaattgcagatggtctcaacattactgaagaaatgctgaggcctgaatcgatgacaagacaaattaatgatcagatttctcttgcaaaagcaattcttgtaattgcaaaagaaagcaacaaccttcaatttgcatgggaactaagtgctcaaatccgtaactcacagatgcttctttctaatgctgcttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="44248" stop="52217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44548" g_stop="44826" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51706" g_stop="51917" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="491" r_length="212" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E265553" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44548" e_stop="44826"/>
          <exon e_start="51706" e_stop="51917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAGGTAATGTTCGTTTTCGTTGTATTATAAATTGCTGTTGTTTTCTGTTTCTAAGCTAAATATTCTTTTTTAAGCTAGATGAGTTTGTGTGGGTTGTGGAATTTGAGCTTTGCGGGTTAGTCAATTACTTGTTAATGTATTTGACATGGACAAACTGAAATGATTGTTGACATTTGCGATCTAACAGTTTGCAGTAGTATGCAATCAGTCTAAGAGTTAACTCTGAATTTCCATTTTAGAGTTCTTGTCAAAATTTACACAGATCCAAACTCACTATCTCATAAACCATAGACTAAAGCTGAATTGTAGATAAAAAATAAGCGAAACTCAATAAGGGAAGTCTGTGCAATGTGAGCTCTAGGTTTATGAACTTTACAAGGCTATATGCTTACACTTGTGTGTGCTATTCACAGAATCTACTAACAAACTATTTTTAGTTAACTACTGGCTAGCCTCCTTATAACAAAGTAACTGGCCATTAAACAATAATTAATCACCTAACTACAAGCTAACTACAACAACAACCAAAGTTAAGTTGCACCACTGTCAATAGTCTCTACCTTTTGTTTTAGATCCTTATTTAGATAGATTTTGATTTTTAATCCAAGTGTTAGCCTTTCCTTTCAATATTATCTCTTAGGTGAGTGTACAACCAATTCACTAAATCTAGTTAATATGTTGTACAGTCGTTAGGTGTAATTTTCATTGCATTTATTGGTTAATAATGGTCATTTTGGTTTGAGAATTGGCAACTAAGGCACATACAGATCTTTTGAAACAAAAAGGGCAAGTTGGAAATTTCTGAAACTTCTTATGAAATTATTTCTATGTCCAAAAGCAGTTTATGCCCGGTTTAATTATTGTTATCCTTTTAAACAGCTAAAAGTACTATGAAGCTTTCTTTCTTTCAAAGATATGTTCCAAGTGAATTTAAAGTAATTGTTTCTTGTCGAAGAACACCTAATTCTTTGAGAATATGTATCAAACTTTTCACCTATTTGGTAATGGCCCATTCCCAGGTCCTTGATCACCGGTATTTTGTTTCCCGACAACAAACTTCTAAAGGATAATTGTAGTCAACTTTTTTTTCCTATTACTTATGGATATTATTGCTATGGGGTAAGTGTCAATAAGTACATTGCTCGACAAATGTCACAAGATCTCCACTGTGCATTGATTAATCAGAAGAGATTATGACTACATTTAGCATTTTGGAGTGAGTCTATAGCTGGGCTTGTGAAATAATTTGACGTTTTTTGGTTACCATGAGCAGTAGTTATTGATTTTGGAAAAATACTTTAATGCTAAAAGAAATCTTGTACAGTAGTAACAGTGTCTGAAAGTATCTGGGCTACTTTGGGGCCTGGAACTAATATCTTTATTTTTTTGGGATTAGGCTATCAAGATGAAATTCATGGTATTGATGGATAAACAAATTTGGTCAAATTAAAGAAACAAAAAGATAGGTTTATTCTTGTTTATGACTTGAGGGTATCGTGAAGATCTGTCATATTAATGCCCTCAGCCTCAAGTAAATCTGCTTCAAAGATGATAAAGATAGCAAATAGAAAAGGAAAAGTTAAGCATCCGAGTCTAAGACATGGAAGAATACCGTAGTCCCTTCCTCCCAAATTTAAGCTTTTGGGAACATTGAGGTGTCCACACTTGGTGGGAAGTTCATAAACTGATCATTTCATATTACACTACCCCATGTCTTATGAAAGAATTAAATGAAACCAAGAGAAATCTGATCAACATGTAGTTTATTGTGGCCTCCACATTTTTCTAGTTTAGCATTAAACAATGTGGTACAATTTGATTATTGTTCAAGTACCTCCATCAAGCTGTGGCAGTCAAAGACAAAGTACAGAGTGGCTCGATCTAGAAGCGTCTTAATAAAAGCCTAGATATTCTTCACGGAATTAACAAAATCAATAGAATACAAAGTATGTATAAAGAAAATAGGTTCCATATAAGTTATGCTGGGAGTTGGGAAAACTTAAAAATTATTTAGGGGCACATGGAAGTAATTAATAGATGAAGGACATAAAAAATATCAATTATACAAGACATACCATAGTTACTTGTCTTCCTTGTGGTCTACGTTGTAATTTGCTAATCTTATTGAATGTCTCAAAGGAACCAAGAATGCAGGGTACCCTTTTCGAAAATTAAGAATGTAGAGTTACATAATATATATTTTAGAAGCAATCAATGTAAAATTGTACCCCTCTGTCCCAATTTGTGAGACACACTAATTTTTTTAGTTTGTCCCAAAAAAGAATGTCACTTTTTATAGCAAAAATAACTTAACATTGAAATTCCCCTTTTACCCTTAATGAAATAATTTATTGCCACACAAATATCTAAGATTTATTTTGGATCACAAATTTTATAAGTCACCTTTCTTTCTTAAACTTGTGTCAAGCCACGCGGTGCTACATAAATTGGGACGGAGGGAGTAAAACATAATTCCTACCTTAGAACATAGGTAATTGGAAAAGAATTCTTCTAACAAATTGAATAATTTATGTAAGCTGAGGACACAAATATTGCTTTTTGAGGTGATCCAGATAAAATGGGGAGGTTTCTGTTATCTGTAGATAACAATGTGGTTCTAAGAGTAGCTGAAAACACTCTGGTATTACTCAACACAGATTTCACCTTTATTCTGGAGTGGTCAATATGGGAAGGTCAAAAAGATTCGGTGAAGTAGTTTTTTTTCTGCTTTTTGAATGATCTACGATATTTTTAAAAAGAAGATAGGAACAGTCTTGGTGGCAGAGGTGTATCCCAGAAGGGGTCACTCGGTTCACTTGAACCCATGCTTCCCTCCTGAAATCATATATAGTAGTGTTATATTTTTTTTAAAAATATTTAAATATAGATACGTGAACCCATAGTTGAAGTATCATACCATGCGATTATGGTTGGGTGCAACTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATTTCTCTTGTTTTATTTTCCTTTTAAAAATTGGATAACGCTTCTCTAAGTGGTTTGGATAGGTAAAAGTAATTTTGGATCTATAATTTTTAAATTCTAATTATTTTTAGTGATAAGAACCTAAATTTTAAACCGATCAACTTCATATCTTAGATCCAACTGTTCGTAATAGTGTACCCATTATCTCAAAATTCTGGATACGCCTCAGCAGTTGGTGGTTCAGCTCAACTGTACTTCACTCAACTTTCTCCCAAGCAAAAATTTGTTTCTCAAAAATAAAATAAAATCCAAGATTTGCTCTTACGTCATTATGAGTGGTTGACCCATGATTTAAAGACCACATTTGCATCATGCATTAATGTAGGATCTGTCATTGGATTTTTATAATAAGGAATTTTCAGTCAGTTGGTTGGTTCAAAATTAGATTCAGATTGGTGTAATAGATTTTGATATAAAAACCAACTGATTAACAGGCCAAAGTTATTTCATTCCATTAAGTTTTCTTCTCTTCATTTGATTATATTGAATAAAAGTAGAAGAAAATATTAGCAACAACATACCCGGTGAAATCCCAAAAAGCGGGGTCTTGTGAGGATAGCATGGGTAGAGTGTACGCTATCCTTACCACTACCTCGTGGAGGCAGAGAGACTATTTTTAAAAGACCCTTGGTCAAGTGCATCAACCCAAATAACAAAATAAGAAAGCAATGGAGAAAGAGGAACAAATAATAAGAAAAGCAGTGTAAAGTCTACAATACCAACAACAAAATTGTGTGATGATCGAAAATACAATAAACAACATAGGACAAGAACCACAAGGGCATGACTAGTCCTATGAAACACTGTAAAGTCTAAATCTTTATAAGGCAAGGCAACACTCTACCCTTACTAACCTTCTACCCTAATATGCTATCACCATTCCTTTCTGTCTAAGGTGATGTCCTCGGTAATATGAAGTTGCGGAATATCCTGACTACTCACCTCTCCTCGATACTTTTTCGGCTTACCCCTACCCCTGTGCGTATTCCTTACAATCAGCTCTCGCACCTCCTCTGTACTGGGGCGTCAGTGCAGTTTTTCTGCACATATCAAAACCATCTCAGTCTCCCTTTCCTCATTTTGCCCGTCACAGAGGCACACCCACCTTCTCCGGATTACCTCATCCTAATCTTGTCACTTTTAATATGCCCACACATTCATCTCTACATCGTCATCTTCAAAACATACATTTTTTGAATATGTGATTTCTTGACGGACCAACACTCAAACTCATACGACAAGGACGGTCTAATCACCACTTTGTAAAACTTATCTTTAAGTTTAGGTGGTACCTTCTTATCGCACAAGTCCAAAGGCAAGCCACTTTTTCATACATGCCGCTCCATTGTGATGTGTGACATCATCATCATGTCCCCACTACCCTGGAGGCAGACCCGAGGTATTTAAAATTCTCTCTTCGGAATAGACTGTGTGGCAAGCCTCACTTCCACATCCACTTCATCCAATGCAACACTGAAGTTACAATCCAAATATTCCGTTTGGTCCTGCTCAACCCGAACCCTTTAGACTTCAGATAAGTTAAATATAAATAACAATTAAAAAGTGTGCCTATCAGCCAGATAAGTTAGTGAAAAAACATAGATTAGTTTTGATATTTTTTTCTTATATTAAATATCCTTTATAGTATTTCCAATTTATGCTTAATACTTTTTATGTGTATCATATTTCAGAAATTGTAAATTTAAAACATCGAAGGCAAAATTAGCAAGCCATCACAGTTTGGAGTCATAATCAAATCAGAAGAAAATAAATACGTACTCAGTCACTAATTAAAATCACAAAAGAATTGTGCGTTGATTCAACTGAATTCATCACCTATGATTCTAAACTAGGGCTAAAGGAGAGTTGGTGGTATGAAAGAATGAATAAGAAAAGTAAAGAAAATTAAAAAGAAAAACTAAAGGCTTAAGAAAAAAAAAGAATAGGAAAAGGCTGGTAGCGTAAAACCCAGTAAAAAAAAAAATTAGAAGACCACCACCACCACCACAACAACAACATCAACTTACTCTGTGTAATTCCACAAGTGGGGTATGGGGAGAGTTAGGATGTACGCGGATGGTAAAAAAAAAGGAAAAAATAACAAGGAAGTCTGAAGTGGGAAAGTTAGGAGACTAGAGTCAAATTTACTTGAAGTAAAATTAAGTGCATTGAGGGGGATTTCAACTTTGGTTGCAAAGACGAGGACTTGCAAAAAGATTTCTCAACTAGACCACAACACATTCTGCACTTTCAGATGCCTTTGTTTTCATGTCTATTTCATGTTGATATTACATGTATATACAAAGTTTTTCTCAAAGTCTATTGGGAAGGTGGACAATGTAGGCCCCCCCTCTTGTCATTATGCCGGTTCATGTTTGCCAATGATAATTTTTTTCCTATTTGGGAAAGAAACAACAACATACTCCGTGAAACTTTTCTAGTTGGGAAAGTAAAGGATAAAAATAAAAGCAAAAGGTGTGTTGACACTTGAATATATTTTGGAGAATTTATTGGTTTTATGGCGACTGTTTTTGCAAAAATCTTTTCTATTCATATGGCCCTTGATCCAGCAAGGTACTTCTTATTTTCTTCTTACTCCTTTTTAAGCATTTCATCCGACAATTGATATTTATCCATTTATGCTTTTCTATTGCCCAATGCTGTGTTTGCTGCATAGATTCCATGCCATAATGTATTTGCCTAACTGAAGTCAGAGTAATAATTGGAAGAAAAAGCTGTTGGTGATGCTAGAAACTCAAATAGGCTCCCTGTTAGTGCTTAGTGTTTTTAAATGCAGAAACTACACCAGAATCCTGTGGAGCTTTAAGTACAAAGAGCAACTAAACGAGCGGTTTTAGTGAAGACACAAATTAAGGAAGAAACAGAGTTATGATGTAATACAAGCAGAACAACTGTAACAAAAAACAACAATTTTACACAATGGAATTGAAAAACTTCAAAACTTGACATGTAGGAAGTAAAAATCACGTCTATATGCCCTTATCAGAAAAAAATTAGTAAAAGAAAGCATGTCGATGTTAAGAAACCATTTTAAAATTATGTTTCCAGTTGCAGAAAATGAAATTTTTCTAATTTAAATATAGTGCTTGGTTTTCCTCTATATTTCCAATTCCAATTCTTTATCACTAATGTATTTAATTATGACTTTTATATAGAAATTAATAAGACACTTTACCAGCTGTATGCATTGTTTAGTGCTGCCTTAATTAGGTCAAGCTCTTGATTAACAAGACCCATATAAGCTAAGTTGTTCAGACTCTCCAAAAATGTCGGCCGCACCCGTGTCGGATCCTTCAAAAATACACTGTTTTTGGAGGATTTGACACACACTGGTCAACATTTTTGAAGAGTCCGAGCAACATAACATATAAGTGCTTTGGTTCCTGCAGTAGAACACCATGTGAGCAGGGGAATGCATGACCTGCACCTAGCTTTAGGGTTTAAATGCTCTGTAAATGAGCTCAACAACACTATTTGGTTTCTGAAAATCAAAAGTTAAGTGACATCTAGAATTTAGTAATAATTCCAAATTTGTAATACTGATGAGAGGATACATTCTACGGTGTTTTACACTATTTGAATCATACTGTGCTGTTAGCTTATGTGTAGTGGTAAGCTTGATTAAAGAAGTAGGGACTGGGCACAGGATTCCTTATTTACCTACCCAGACAACTACATATGTTTGGAAGAAGAATTTATTAACTCATTAGCTGACGCCTTTTGCAATGAAGACTTCCTCTCTAGTTGGCATTCTCATTTGAAGCTGCAATTTGTTTTTCCCTCTGTCTGACTGTCTCTTGTAAGCTTATGGAAAAATCGGAACCTTTACTCTTTTGTTTTTCTTTGCAGAGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAG</genome_strand>
        <mrna_strand>CCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTTATAGGCATGACAGAATTGCAGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACAAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGTAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451508" ref_strand="+" ref_description="SGN-E451508 [cSTS-12-P12]">
      <seq>caataaaacccaaatcttcaatttcaccctaattcttctatttcccactcatcttttttttttggtgccaaaatatactgttactgaagtcactgtaccgcagatttactcgaaattatttgtattcagtagtcgccggaaaatgagaaggaggaactcggatttccggcggccggtgcgacggcgattctccaatgtattttggttaactttgtgtggattggccgtattgctgctcattattttgctcagcagagaaactcgcgattcatcgtctagattggtttatacaaagagaccctatagacatgacagaattgcggatggtctcaacatcactgaagaaatgctgaggcctgaatcgatgacaagacaaattaatgatcagatttctcttgcaaaggcaattcttgtaattgcaaaagaaagcaacaaccttcaatttgcatgggaactaagtgctcaaatccgcaactcacagatgcttctttctaatgctgcttccagaagaagtcccttgacaaacggagaatcagaaagtgcaattcgagatatggcacttctgctctaccaagcccagcaacttcactatgacagtgcaaccatgtttatgagactgaaagccaaaatccaaagccttgaagaacaggcgaattccttcagtgagaagagttcaaaatatggacaaattgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="44239" stop="52408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44586" g_stop="44826" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="295" r_length="237" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51706" g_stop="52108" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="698" r_length="403" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E451508" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44586" e_stop="44826"/>
          <exon e_start="51706" e_stop="52108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAGGTAATGTTCGTTTTCGTTGTATTATAAATTGCTGTTGTTTTCTGTTTCTAAGCTAAATATTCTTTTTTAAGCTAGATGAGTTTGTGTGGGTTGTGGAATTTGAGCTTTGCGGGTTAGTCAATTACTTGTTAATGTATTTGACATGGACAAACTGAAATGATTGTTGACATTTGCGATCTAACAGTTTGCAGTAGTATGCAATCAGTCTAAGAGTTAACTCTGAATTTCCATTTTAGAGTTCTTGTCAAAATTTACACAGATCCAAACTCACTATCTCATAAACCATAGACTAAAGCTGAATTGTAGATAAAAAATAAGCGAAACTCAATAAGGGAAGTCTGTGCAATGTGAGCTCTAGGTTTATGAACTTTACAAGGCTATATGCTTACACTTGTGTGTGCTATTCACAGAATCTACTAACAAACTATTTTTAGTTAACTACTGGCTAGCCTCCTTATAACAAAGTAACTGGCCATTAAACAATAATTAATCACCTAACTACAAGCTAACTACAACAACAACCAAAGTTAAGTTGCACCACTGTCAATAGTCTCTACCTTTTGTTTTAGATCCTTATTTAGATAGATTTTGATTTTTAATCCAAGTGTTAGCCTTTCCTTTCAATATTATCTCTTAGGTGAGTGTACAACCAATTCACTAAATCTAGTTAATATGTTGTACAGTCGTTAGGTGTAATTTTCATTGCATTTATTGGTTAATAATGGTCATTTTGGTTTGAGAATTGGCAACTAAGGCACATACAGATCTTTTGAAACAAAAAGGGCAAGTTGGAAATTTCTGAAACTTCTTATGAAATTATTTCTATGTCCAAAAGCAGTTTATGCCCGGTTTAATTATTGTTATCCTTTTAAACAGCTAAAAGTACTATGAAGCTTTCTTTCTTTCAAAGATATGTTCCAAGTGAATTTAAAGTAATTGTTTCTTGTCGAAGAACACCTAATTCTTTGAGAATATGTATCAAACTTTTCACCTATTTGGTAATGGCCCATTCCCAGGTCCTTGATCACCGGTATTTTGTTTCCCGACAACAAACTTCTAAAGGATAATTGTAGTCAACTTTTTTTTCCTATTACTTATGGATATTATTGCTATGGGGTAAGTGTCAATAAGTACATTGCTCGACAAATGTCACAAGATCTCCACTGTGCATTGATTAATCAGAAGAGATTATGACTACATTTAGCATTTTGGAGTGAGTCTATAGCTGGGCTTGTGAAATAATTTGACGTTTTTTGGTTACCATGAGCAGTAGTTATTGATTTTGGAAAAATACTTTAATGCTAAAAGAAATCTTGTACAGTAGTAACAGTGTCTGAAAGTATCTGGGCTACTTTGGGGCCTGGAACTAATATCTTTATTTTTTTGGGATTAGGCTATCAAGATGAAATTCATGGTATTGATGGATAAACAAATTTGGTCAAATTAAAGAAACAAAAAGATAGGTTTATTCTTGTTTATGACTTGAGGGTATCGTGAAGATCTGTCATATTAATGCCCTCAGCCTCAAGTAAATCTGCTTCAAAGATGATAAAGATAGCAAATAGAAAAGGAAAAGTTAAGCATCCGAGTCTAAGACATGGAAGAATACCGTAGTCCCTTCCTCCCAAATTTAAGCTTTTGGGAACATTGAGGTGTCCACACTTGGTGGGAAGTTCATAAACTGATCATTTCATATTACACTACCCCATGTCTTATGAAAGAATTAAATGAAACCAAGAGAAATCTGATCAACATGTAGTTTATTGTGGCCTCCACATTTTTCTAGTTTAGCATTAAACAATGTGGTACAATTTGATTATTGTTCAAGTACCTCCATCAAGCTGTGGCAGTCAAAGACAAAGTACAGAGTGGCTCGATCTAGAAGCGTCTTAATAAAAGCCTAGATATTCTTCACGGAATTAACAAAATCAATAGAATACAAAGTATGTATAAAGAAAATAGGTTCCATATAAGTTATGCTGGGAGTTGGGAAAACTTAAAAATTATTTAGGGGCACATGGAAGTAATTAATAGATGAAGGACATAAAAAATATCAATTATACAAGACATACCATAGTTACTTGTCTTCCTTGTGGTCTACGTTGTAATTTGCTAATCTTATTGAATGTCTCAAAGGAACCAAGAATGCAGGGTACCCTTTTCGAAAATTAAGAATGTAGAGTTACATAATATATATTTTAGAAGCAATCAATGTAAAATTGTACCCCTCTGTCCCAATTTGTGAGACACACTAATTTTTTTAGTTTGTCCCAAAAAAGAATGTCACTTTTTATAGCAAAAATAACTTAACATTGAAATTCCCCTTTTACCCTTAATGAAATAATTTATTGCCACACAAATATCTAAGATTTATTTTGGATCACAAATTTTATAAGTCACCTTTCTTTCTTAAACTTGTGTCAAGCCACGCGGTGCTACATAAATTGGGACGGAGGGAGTAAAACATAATTCCTACCTTAGAACATAGGTAATTGGAAAAGAATTCTTCTAACAAATTGAATAATTTATGTAAGCTGAGGACACAAATATTGCTTTTTGAGGTGATCCAGATAAAATGGGGAGGTTTCTGTTATCTGTAGATAACAATGTGGTTCTAAGAGTAGCTGAAAACACTCTGGTATTACTCAACACAGATTTCACCTTTATTCTGGAGTGGTCAATATGGGAAGGTCAAAAAGATTCGGTGAAGTAGTTTTTTTTCTGCTTTTTGAATGATCTACGATATTTTTAAAAAGAAGATAGGAACAGTCTTGGTGGCAGAGGTGTATCCCAGAAGGGGTCACTCGGTTCACTTGAACCCATGCTTCCCTCCTGAAATCATATATAGTAGTGTTATATTTTTTTTAAAAATATTTAAATATAGATACGTGAACCCATAGTTGAAGTATCATACCATGCGATTATGGTTGGGTGCAACTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATTTCTCTTGTTTTATTTTCCTTTTAAAAATTGGATAACGCTTCTCTAAGTGGTTTGGATAGGTAAAAGTAATTTTGGATCTATAATTTTTAAATTCTAATTATTTTTAGTGATAAGAACCTAAATTTTAAACCGATCAACTTCATATCTTAGATCCAACTGTTCGTAATAGTGTACCCATTATCTCAAAATTCTGGATACGCCTCAGCAGTTGGTGGTTCAGCTCAACTGTACTTCACTCAACTTTCTCCCAAGCAAAAATTTGTTTCTCAAAAATAAAATAAAATCCAAGATTTGCTCTTACGTCATTATGAGTGGTTGACCCATGATTTAAAGACCACATTTGCATCATGCATTAATGTAGGATCTGTCATTGGATTTTTATAATAAGGAATTTTCAGTCAGTTGGTTGGTTCAAAATTAGATTCAGATTGGTGTAATAGATTTTGATATAAAAACCAACTGATTAACAGGCCAAAGTTATTTCATTCCATTAAGTTTTCTTCTCTTCATTTGATTATATTGAATAAAAGTAGAAGAAAATATTAGCAACAACATACCCGGTGAAATCCCAAAAAGCGGGGTCTTGTGAGGATAGCATGGGTAGAGTGTACGCTATCCTTACCACTACCTCGTGGAGGCAGAGAGACTATTTTTAAAAGACCCTTGGTCAAGTGCATCAACCCAAATAACAAAATAAGAAAGCAATGGAGAAAGAGGAACAAATAATAAGAAAAGCAGTGTAAAGTCTACAATACCAACAACAAAATTGTGTGATGATCGAAAATACAATAAACAACATAGGACAAGAACCACAAGGGCATGACTAGTCCTATGAAACACTGTAAAGTCTAAATCTTTATAAGGCAAGGCAACACTCTACCCTTACTAACCTTCTACCCTAATATGCTATCACCATTCCTTTCTGTCTAAGGTGATGTCCTCGGTAATATGAAGTTGCGGAATATCCTGACTACTCACCTCTCCTCGATACTTTTTCGGCTTACCCCTACCCCTGTGCGTATTCCTTACAATCAGCTCTCGCACCTCCTCTGTACTGGGGCGTCAGTGCAGTTTTTCTGCACATATCAAAACCATCTCAGTCTCCCTTTCCTCATTTTGCCCGTCACAGAGGCACACCCACCTTCTCCGGATTACCTCATCCTAATCTTGTCACTTTTAATATGCCCACACATTCATCTCTACATCGTCATCTTCAAAACATACATTTTTTGAATATGTGATTTCTTGACGGACCAACACTCAAACTCATACGACAAGGACGGTCTAATCACCACTTTGTAAAACTTATCTTTAAGTTTAGGTGGTACCTTCTTATCGCACAAGTCCAAAGGCAAGCCACTTTTTCATACATGCCGCTCCATTGTGATGTGTGACATCATCATCATGTCCCCACTACCCTGGAGGCAGACCCGAGGTATTTAAAATTCTCTCTTCGGAATAGACTGTGTGGCAAGCCTCACTTCCACATCCACTTCATCCAATGCAACACTGAAGTTACAATCCAAATATTCCGTTTGGTCCTGCTCAACCCGAACCCTTTAGACTTCAGATAAGTTAAATATAAATAACAATTAAAAAGTGTGCCTATCAGCCAGATAAGTTAGTGAAAAAACATAGATTAGTTTTGATATTTTTTTCTTATATTAAATATCCTTTATAGTATTTCCAATTTATGCTTAATACTTTTTATGTGTATCATATTTCAGAAATTGTAAATTTAAAACATCGAAGGCAAAATTAGCAAGCCATCACAGTTTGGAGTCATAATCAAATCAGAAGAAAATAAATACGTACTCAGTCACTAATTAAAATCACAAAAGAATTGTGCGTTGATTCAACTGAATTCATCACCTATGATTCTAAACTAGGGCTAAAGGAGAGTTGGTGGTATGAAAGAATGAATAAGAAAAGTAAAGAAAATTAAAAAGAAAAACTAAAGGCTTAAGAAAAAAAAAGAATAGGAAAAGGCTGGTAGCGTAAAACCCAGTAAAAAAAAAAATTAGAAGACCACCACCACCACCACAACAACAACATCAACTTACTCTGTGTAATTCCACAAGTGGGGTATGGGGAGAGTTAGGATGTACGCGGATGGTAAAAAAAAAGGAAAAAATAACAAGGAAGTCTGAAGTGGGAAAGTTAGGAGACTAGAGTCAAATTTACTTGAAGTAAAATTAAGTGCATTGAGGGGGATTTCAACTTTGGTTGCAAAGACGAGGACTTGCAAAAAGATTTCTCAACTAGACCACAACACATTCTGCACTTTCAGATGCCTTTGTTTTCATGTCTATTTCATGTTGATATTACATGTATATACAAAGTTTTTCTCAAAGTCTATTGGGAAGGTGGACAATGTAGGCCCCCCCTCTTGTCATTATGCCGGTTCATGTTTGCCAATGATAATTTTTTTCCTATTTGGGAAAGAAACAACAACATACTCCGTGAAACTTTTCTAGTTGGGAAAGTAAAGGATAAAAATAAAAGCAAAAGGTGTGTTGACACTTGAATATATTTTGGAGAATTTATTGGTTTTATGGCGACTGTTTTTGCAAAAATCTTTTCTATTCATATGGCCCTTGATCCAGCAAGGTACTTCTTATTTTCTTCTTACTCCTTTTTAAGCATTTCATCCGACAATTGATATTTATCCATTTATGCTTTTCTATTGCCCAATGCTGTGTTTGCTGCATAGATTCCATGCCATAATGTATTTGCCTAACTGAAGTCAGAGTAATAATTGGAAGAAAAAGCTGTTGGTGATGCTAGAAACTCAAATAGGCTCCCTGTTAGTGCTTAGTGTTTTTAAATGCAGAAACTACACCAGAATCCTGTGGAGCTTTAAGTACAAAGAGCAACTAAACGAGCGGTTTTAGTGAAGACACAAATTAAGGAAGAAACAGAGTTATGATGTAATACAAGCAGAACAACTGTAACAAAAAACAACAATTTTACACAATGGAATTGAAAAACTTCAAAACTTGACATGTAGGAAGTAAAAATCACGTCTATATGCCCTTATCAGAAAAAAATTAGTAAAAGAAAGCATGTCGATGTTAAGAAACCATTTTAAAATTATGTTTCCAGTTGCAGAAAATGAAATTTTTCTAATTTAAATATAGTGCTTGGTTTTCCTCTATATTTCCAATTCCAATTCTTTATCACTAATGTATTTAATTATGACTTTTATATAGAAATTAATAAGACACTTTACCAGCTGTATGCATTGTTTAGTGCTGCCTTAATTAGGTCAAGCTCTTGATTAACAAGACCCATATAAGCTAAGTTGTTCAGACTCTCCAAAAATGTCGGCCGCACCCGTGTCGGATCCTTCAAAAATACACTGTTTTTGGAGGATTTGACACACACTGGTCAACATTTTTGAAGAGTCCGAGCAACATAACATATAAGTGCTTTGGTTCCTGCAGTAGAACACCATGTGAGCAGGGGAATGCATGACCTGCACCTAGCTTTAGGGTTTAAATGCTCTGTAAATGAGCTCAACAACACTATTTGGTTTCTGAAAATCAAAAGTTAAGTGACATCTAGAATTTAGTAATAATTCCAAATTTGTAATACTGATGAGAGGATACATTCTACGGTGTTTTACACTATTTGAATCATACTGTGCTGTTAGCTTATGTGTAGTGGTAAGCTTGATTAAAGAAGTAGGGACTGGGCACAGGATTCCTTATTTACCTACCCAGACAACTACATATGTTTGGAAGAAGAATTTATTAACTCATTAGCTGACGCCTTTTGCAATGAAGACTTCCTCTCTAGTTGGCATTCTCATTTGAAGCTGCAATTTGTTTTTCCCTCTGTCTGACTGTCTCTTGTAAGCTTATGGAAAAATCGGAACCTTTACTCTTTTGTTTTTCTTTGCAGAGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTACTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAGACTGAAAGGTAAAATCCAAAGCCTTGAAGAACAGGCAAATTCCTTCAGTGAGAAGAGTTCAAAATATGGACAAATTGCTGCTG</genome_strand>
        <mrna_strand>TTTTTGGTGCCAAAATATACTGTTACTGAAG---TCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGG-AAAATGAGAAGGAGGAACTCGGATTTCCGGCGGCCGGTGCGACGGCGATTCTCCAATGTATTTTGGTTAACTTTGTGTGGATTGGCCGTATTGCTGCTCATTATTTTGCTCAGCAGAGAAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCTATAGACATGACAGAATTGCGGATGGTCTCAACATCACTGAAGAAATGCTGAGGCCTGAATCGATGACAAGACAAATTAATGATCAGATTTCTCTTGCAAAGGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCCAGAAGAAGTCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTGCTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAGACTGAAAGCCAAAATCCAAAGCCTTGAAGAACAGGCGAATTCCTTCAGTGAGAAGAGTTCAAAATATGGACAAATTGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484305" ref_strand="+" ref_description="SGN-E484305 [cSTE-12-J22]">
      <seq>taaaacccaaatcttcaatttcaccctaattcttcgatttcccactcatcttttttttttggtgccaaaatatactgttactgaagtcactgtaccgcagatttactcgaaattatttgtattcagtagttgccggaaaatgagacggaggaactcggatttccggcggccggtgcgacggcgattctccaatgttttttggttaactttgtgtggattggccgtattgctgctcattattttgctcagcagagaaactcgcgattcatcgtctagattggtttatacaaagagaccctatagacatgacagaattgcggatggtctcaacatcactgaagaaatgctgaggcctgaatcgatgacaagacaaattaatgatcagatttctcttgcaaaggcaattcttgtaattgcaaaagaaagcaacaaccttcaatttgcatgggaactaagtgctcaaatccgcaactcacagatgcttctttctaatgctgcttccagaagaagtcccctgacaaatggagaatcagaaagtgcaattcgagatatggcaattctgctctaccaagcccagcaacttcactatgacagtgcaaccatgtttatgagactgaaagccaaaatccaaagccttgaagaaaggcgaattccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="44242" stop="52371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44586" g_stop="44826" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="292" r_length="237" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51706" g_stop="52071" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="657" r_length="365" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E484305" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44586" e_stop="44826"/>
          <exon e_start="51706" e_stop="52071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAGGTAATGTTCGTTTTCGTTGTATTATAAATTGCTGTTGTTTTCTGTTTCTAAGCTAAATATTCTTTTTTAAGCTAGATGAGTTTGTGTGGGTTGTGGAATTTGAGCTTTGCGGGTTAGTCAATTACTTGTTAATGTATTTGACATGGACAAACTGAAATGATTGTTGACATTTGCGATCTAACAGTTTGCAGTAGTATGCAATCAGTCTAAGAGTTAACTCTGAATTTCCATTTTAGAGTTCTTGTCAAAATTTACACAGATCCAAACTCACTATCTCATAAACCATAGACTAAAGCTGAATTGTAGATAAAAAATAAGCGAAACTCAATAAGGGAAGTCTGTGCAATGTGAGCTCTAGGTTTATGAACTTTACAAGGCTATATGCTTACACTTGTGTGTGCTATTCACAGAATCTACTAACAAACTATTTTTAGTTAACTACTGGCTAGCCTCCTTATAACAAAGTAACTGGCCATTAAACAATAATTAATCACCTAACTACAAGCTAACTACAACAACAACCAAAGTTAAGTTGCACCACTGTCAATAGTCTCTACCTTTTGTTTTAGATCCTTATTTAGATAGATTTTGATTTTTAATCCAAGTGTTAGCCTTTCCTTTCAATATTATCTCTTAGGTGAGTGTACAACCAATTCACTAAATCTAGTTAATATGTTGTACAGTCGTTAGGTGTAATTTTCATTGCATTTATTGGTTAATAATGGTCATTTTGGTTTGAGAATTGGCAACTAAGGCACATACAGATCTTTTGAAACAAAAAGGGCAAGTTGGAAATTTCTGAAACTTCTTATGAAATTATTTCTATGTCCAAAAGCAGTTTATGCCCGGTTTAATTATTGTTATCCTTTTAAACAGCTAAAAGTACTATGAAGCTTTCTTTCTTTCAAAGATATGTTCCAAGTGAATTTAAAGTAATTGTTTCTTGTCGAAGAACACCTAATTCTTTGAGAATATGTATCAAACTTTTCACCTATTTGGTAATGGCCCATTCCCAGGTCCTTGATCACCGGTATTTTGTTTCCCGACAACAAACTTCTAAAGGATAATTGTAGTCAACTTTTTTTTCCTATTACTTATGGATATTATTGCTATGGGGTAAGTGTCAATAAGTACATTGCTCGACAAATGTCACAAGATCTCCACTGTGCATTGATTAATCAGAAGAGATTATGACTACATTTAGCATTTTGGAGTGAGTCTATAGCTGGGCTTGTGAAATAATTTGACGTTTTTTGGTTACCATGAGCAGTAGTTATTGATTTTGGAAAAATACTTTAATGCTAAAAGAAATCTTGTACAGTAGTAACAGTGTCTGAAAGTATCTGGGCTACTTTGGGGCCTGGAACTAATATCTTTATTTTTTTGGGATTAGGCTATCAAGATGAAATTCATGGTATTGATGGATAAACAAATTTGGTCAAATTAAAGAAACAAAAAGATAGGTTTATTCTTGTTTATGACTTGAGGGTATCGTGAAGATCTGTCATATTAATGCCCTCAGCCTCAAGTAAATCTGCTTCAAAGATGATAAAGATAGCAAATAGAAAAGGAAAAGTTAAGCATCCGAGTCTAAGACATGGAAGAATACCGTAGTCCCTTCCTCCCAAATTTAAGCTTTTGGGAACATTGAGGTGTCCACACTTGGTGGGAAGTTCATAAACTGATCATTTCATATTACACTACCCCATGTCTTATGAAAGAATTAAATGAAACCAAGAGAAATCTGATCAACATGTAGTTTATTGTGGCCTCCACATTTTTCTAGTTTAGCATTAAACAATGTGGTACAATTTGATTATTGTTCAAGTACCTCCATCAAGCTGTGGCAGTCAAAGACAAAGTACAGAGTGGCTCGATCTAGAAGCGTCTTAATAAAAGCCTAGATATTCTTCACGGAATTAACAAAATCAATAGAATACAAAGTATGTATAAAGAAAATAGGTTCCATATAAGTTATGCTGGGAGTTGGGAAAACTTAAAAATTATTTAGGGGCACATGGAAGTAATTAATAGATGAAGGACATAAAAAATATCAATTATACAAGACATACCATAGTTACTTGTCTTCCTTGTGGTCTACGTTGTAATTTGCTAATCTTATTGAATGTCTCAAAGGAACCAAGAATGCAGGGTACCCTTTTCGAAAATTAAGAATGTAGAGTTACATAATATATATTTTAGAAGCAATCAATGTAAAATTGTACCCCTCTGTCCCAATTTGTGAGACACACTAATTTTTTTAGTTTGTCCCAAAAAAGAATGTCACTTTTTATAGCAAAAATAACTTAACATTGAAATTCCCCTTTTACCCTTAATGAAATAATTTATTGCCACACAAATATCTAAGATTTATTTTGGATCACAAATTTTATAAGTCACCTTTCTTTCTTAAACTTGTGTCAAGCCACGCGGTGCTACATAAATTGGGACGGAGGGAGTAAAACATAATTCCTACCTTAGAACATAGGTAATTGGAAAAGAATTCTTCTAACAAATTGAATAATTTATGTAAGCTGAGGACACAAATATTGCTTTTTGAGGTGATCCAGATAAAATGGGGAGGTTTCTGTTATCTGTAGATAACAATGTGGTTCTAAGAGTAGCTGAAAACACTCTGGTATTACTCAACACAGATTTCACCTTTATTCTGGAGTGGTCAATATGGGAAGGTCAAAAAGATTCGGTGAAGTAGTTTTTTTTCTGCTTTTTGAATGATCTACGATATTTTTAAAAAGAAGATAGGAACAGTCTTGGTGGCAGAGGTGTATCCCAGAAGGGGTCACTCGGTTCACTTGAACCCATGCTTCCCTCCTGAAATCATATATAGTAGTGTTATATTTTTTTTAAAAATATTTAAATATAGATACGTGAACCCATAGTTGAAGTATCATACCATGCGATTATGGTTGGGTGCAACTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATTTCTCTTGTTTTATTTTCCTTTTAAAAATTGGATAACGCTTCTCTAAGTGGTTTGGATAGGTAAAAGTAATTTTGGATCTATAATTTTTAAATTCTAATTATTTTTAGTGATAAGAACCTAAATTTTAAACCGATCAACTTCATATCTTAGATCCAACTGTTCGTAATAGTGTACCCATTATCTCAAAATTCTGGATACGCCTCAGCAGTTGGTGGTTCAGCTCAACTGTACTTCACTCAACTTTCTCCCAAGCAAAAATTTGTTTCTCAAAAATAAAATAAAATCCAAGATTTGCTCTTACGTCATTATGAGTGGTTGACCCATGATTTAAAGACCACATTTGCATCATGCATTAATGTAGGATCTGTCATTGGATTTTTATAATAAGGAATTTTCAGTCAGTTGGTTGGTTCAAAATTAGATTCAGATTGGTGTAATAGATTTTGATATAAAAACCAACTGATTAACAGGCCAAAGTTATTTCATTCCATTAAGTTTTCTTCTCTTCATTTGATTATATTGAATAAAAGTAGAAGAAAATATTAGCAACAACATACCCGGTGAAATCCCAAAAAGCGGGGTCTTGTGAGGATAGCATGGGTAGAGTGTACGCTATCCTTACCACTACCTCGTGGAGGCAGAGAGACTATTTTTAAAAGACCCTTGGTCAAGTGCATCAACCCAAATAACAAAATAAGAAAGCAATGGAGAAAGAGGAACAAATAATAAGAAAAGCAGTGTAAAGTCTACAATACCAACAACAAAATTGTGTGATGATCGAAAATACAATAAACAACATAGGACAAGAACCACAAGGGCATGACTAGTCCTATGAAACACTGTAAAGTCTAAATCTTTATAAGGCAAGGCAACACTCTACCCTTACTAACCTTCTACCCTAATATGCTATCACCATTCCTTTCTGTCTAAGGTGATGTCCTCGGTAATATGAAGTTGCGGAATATCCTGACTACTCACCTCTCCTCGATACTTTTTCGGCTTACCCCTACCCCTGTGCGTATTCCTTACAATCAGCTCTCGCACCTCCTCTGTACTGGGGCGTCAGTGCAGTTTTTCTGCACATATCAAAACCATCTCAGTCTCCCTTTCCTCATTTTGCCCGTCACAGAGGCACACCCACCTTCTCCGGATTACCTCATCCTAATCTTGTCACTTTTAATATGCCCACACATTCATCTCTACATCGTCATCTTCAAAACATACATTTTTTGAATATGTGATTTCTTGACGGACCAACACTCAAACTCATACGACAAGGACGGTCTAATCACCACTTTGTAAAACTTATCTTTAAGTTTAGGTGGTACCTTCTTATCGCACAAGTCCAAAGGCAAGCCACTTTTTCATACATGCCGCTCCATTGTGATGTGTGACATCATCATCATGTCCCCACTACCCTGGAGGCAGACCCGAGGTATTTAAAATTCTCTCTTCGGAATAGACTGTGTGGCAAGCCTCACTTCCACATCCACTTCATCCAATGCAACACTGAAGTTACAATCCAAATATTCCGTTTGGTCCTGCTCAACCCGAACCCTTTAGACTTCAGATAAGTTAAATATAAATAACAATTAAAAAGTGTGCCTATCAGCCAGATAAGTTAGTGAAAAAACATAGATTAGTTTTGATATTTTTTTCTTATATTAAATATCCTTTATAGTATTTCCAATTTATGCTTAATACTTTTTATGTGTATCATATTTCAGAAATTGTAAATTTAAAACATCGAAGGCAAAATTAGCAAGCCATCACAGTTTGGAGTCATAATCAAATCAGAAGAAAATAAATACGTACTCAGTCACTAATTAAAATCACAAAAGAATTGTGCGTTGATTCAACTGAATTCATCACCTATGATTCTAAACTAGGGCTAAAGGAGAGTTGGTGGTATGAAAGAATGAATAAGAAAAGTAAAGAAAATTAAAAAGAAAAACTAAAGGCTTAAGAAAAAAAAAGAATAGGAAAAGGCTGGTAGCGTAAAACCCAGTAAAAAAAAAAATTAGAAGACCACCACCACCACCACAACAACAACATCAACTTACTCTGTGTAATTCCACAAGTGGGGTATGGGGAGAGTTAGGATGTACGCGGATGGTAAAAAAAAAGGAAAAAATAACAAGGAAGTCTGAAGTGGGAAAGTTAGGAGACTAGAGTCAAATTTACTTGAAGTAAAATTAAGTGCATTGAGGGGGATTTCAACTTTGGTTGCAAAGACGAGGACTTGCAAAAAGATTTCTCAACTAGACCACAACACATTCTGCACTTTCAGATGCCTTTGTTTTCATGTCTATTTCATGTTGATATTACATGTATATACAAAGTTTTTCTCAAAGTCTATTGGGAAGGTGGACAATGTAGGCCCCCCCTCTTGTCATTATGCCGGTTCATGTTTGCCAATGATAATTTTTTTCCTATTTGGGAAAGAAACAACAACATACTCCGTGAAACTTTTCTAGTTGGGAAAGTAAAGGATAAAAATAAAAGCAAAAGGTGTGTTGACACTTGAATATATTTTGGAGAATTTATTGGTTTTATGGCGACTGTTTTTGCAAAAATCTTTTCTATTCATATGGCCCTTGATCCAGCAAGGTACTTCTTATTTTCTTCTTACTCCTTTTTAAGCATTTCATCCGACAATTGATATTTATCCATTTATGCTTTTCTATTGCCCAATGCTGTGTTTGCTGCATAGATTCCATGCCATAATGTATTTGCCTAACTGAAGTCAGAGTAATAATTGGAAGAAAAAGCTGTTGGTGATGCTAGAAACTCAAATAGGCTCCCTGTTAGTGCTTAGTGTTTTTAAATGCAGAAACTACACCAGAATCCTGTGGAGCTTTAAGTACAAAGAGCAACTAAACGAGCGGTTTTAGTGAAGACACAAATTAAGGAAGAAACAGAGTTATGATGTAATACAAGCAGAACAACTGTAACAAAAAACAACAATTTTACACAATGGAATTGAAAAACTTCAAAACTTGACATGTAGGAAGTAAAAATCACGTCTATATGCCCTTATCAGAAAAAAATTAGTAAAAGAAAGCATGTCGATGTTAAGAAACCATTTTAAAATTATGTTTCCAGTTGCAGAAAATGAAATTTTTCTAATTTAAATATAGTGCTTGGTTTTCCTCTATATTTCCAATTCCAATTCTTTATCACTAATGTATTTAATTATGACTTTTATATAGAAATTAATAAGACACTTTACCAGCTGTATGCATTGTTTAGTGCTGCCTTAATTAGGTCAAGCTCTTGATTAACAAGACCCATATAAGCTAAGTTGTTCAGACTCTCCAAAAATGTCGGCCGCACCCGTGTCGGATCCTTCAAAAATACACTGTTTTTGGAGGATTTGACACACACTGGTCAACATTTTTGAAGAGTCCGAGCAACATAACATATAAGTGCTTTGGTTCCTGCAGTAGAACACCATGTGAGCAGGGGAATGCATGACCTGCACCTAGCTTTAGGGTTTAAATGCTCTGTAAATGAGCTCAACAACACTATTTGGTTTCTGAAAATCAAAAGTTAAGTGACATCTAGAATTTAGTAATAATTCCAAATTTGTAATACTGATGAGAGGATACATTCTACGGTGTTTTACACTATTTGAATCATACTGTGCTGTTAGCTTATGTGTAGTGGTAAGCTTGATTAAAGAAGTAGGGACTGGGCACAGGATTCCTTATTTACCTACCCAGACAACTACATATGTTTGGAAGAAGAATTTATTAACTCATTAGCTGACGCCTTTTGCAATGAAGACTTCCTCTCTAGTTGGCATTCTCATTTGAAGCTGCAATTTGTTTTTCCCTCTGTCTGACTGTCTCTTGTAAGCTTATGGAAAAATCGGAACCTTTACTCTTTTGTTTTTCTTTGCAGAGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTACTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAGACTGAAAGGTAAAATCCAAAGCCTTGAAGAACAGGCAAATTCCTTC</genome_strand>
        <mrna_strand>TTTTTGGTGCCAAAATATACTGTTACT---GAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTTGCCGG-AAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGCGACGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGCCGTATTGCTGCTCATTATTTTGCTCAGCAGAGAAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCTATAGACATGACAGAATTGCGGATGGTCTCAACATCACTGAAGAAATGCTGAGGCCTGAATCGATGACAAGACAAATTAATGATCAGATTTCTCTTGCAAAGGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCCAGAAGAAGTCCCCTGACAAATGGAGAATCAGAAAGTGCAATTCGAGATATGGCAATTCTGCTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAGACTGAAAGCCAAAATCCAAAGCCTTGAAGAA-AGGCGAATTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270013" ref_strand="+" ref_description="SGN-E270013 [cLEM-7-J12]">
      <seq>attcggcacgggtatactgtgactgaagaagtcactgtaccgcagatttactcgaaattatttgtatgcagtagtcgccggaaaaatgagacggaggaactcggatttccggcggccggtgaggcggcgattctccaatgttttttggttaactttgtgtggattggtcgtattgctgctcattattttgctcagcagaacaactcgcgattcatcgtctagattggtttatacaaagagaccttataggcatgacagaattgcagatggtctcaacattactgaagaaatgctgaggcctgaatcgatgacaagacaaattaatgatcagatttctcttgcaaaagcaattcttgtaattgcaaaagaaagcaacaaccttcaatttgcatgggaactaagtgctcaaatccgtaactcacagatgcttctttctaatgctgcttcaagaagaagccccttgacaaacggagaatcagaaagtgcaattcgagatatggcacttctactctaccaagcccagcaacttcactatgacagtgcaaccatgtttatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="44301" stop="52325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44601" g_stop="44826" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="238" r_length="226" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51706" g_stop="52025" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="558" r_length="320" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E270013" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44601" e_stop="44826"/>
          <exon e_start="51706" e_stop="52025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAGGTAATGTTCGTTTTCGTTGTATTATAAATTGCTGTTGTTTTCTGTTTCTAAGCTAAATATTCTTTTTTAAGCTAGATGAGTTTGTGTGGGTTGTGGAATTTGAGCTTTGCGGGTTAGTCAATTACTTGTTAATGTATTTGACATGGACAAACTGAAATGATTGTTGACATTTGCGATCTAACAGTTTGCAGTAGTATGCAATCAGTCTAAGAGTTAACTCTGAATTTCCATTTTAGAGTTCTTGTCAAAATTTACACAGATCCAAACTCACTATCTCATAAACCATAGACTAAAGCTGAATTGTAGATAAAAAATAAGCGAAACTCAATAAGGGAAGTCTGTGCAATGTGAGCTCTAGGTTTATGAACTTTACAAGGCTATATGCTTACACTTGTGTGTGCTATTCACAGAATCTACTAACAAACTATTTTTAGTTAACTACTGGCTAGCCTCCTTATAACAAAGTAACTGGCCATTAAACAATAATTAATCACCTAACTACAAGCTAACTACAACAACAACCAAAGTTAAGTTGCACCACTGTCAATAGTCTCTACCTTTTGTTTTAGATCCTTATTTAGATAGATTTTGATTTTTAATCCAAGTGTTAGCCTTTCCTTTCAATATTATCTCTTAGGTGAGTGTACAACCAATTCACTAAATCTAGTTAATATGTTGTACAGTCGTTAGGTGTAATTTTCATTGCATTTATTGGTTAATAATGGTCATTTTGGTTTGAGAATTGGCAACTAAGGCACATACAGATCTTTTGAAACAAAAAGGGCAAGTTGGAAATTTCTGAAACTTCTTATGAAATTATTTCTATGTCCAAAAGCAGTTTATGCCCGGTTTAATTATTGTTATCCTTTTAAACAGCTAAAAGTACTATGAAGCTTTCTTTCTTTCAAAGATATGTTCCAAGTGAATTTAAAGTAATTGTTTCTTGTCGAAGAACACCTAATTCTTTGAGAATATGTATCAAACTTTTCACCTATTTGGTAATGGCCCATTCCCAGGTCCTTGATCACCGGTATTTTGTTTCCCGACAACAAACTTCTAAAGGATAATTGTAGTCAACTTTTTTTTCCTATTACTTATGGATATTATTGCTATGGGGTAAGTGTCAATAAGTACATTGCTCGACAAATGTCACAAGATCTCCACTGTGCATTGATTAATCAGAAGAGATTATGACTACATTTAGCATTTTGGAGTGAGTCTATAGCTGGGCTTGTGAAATAATTTGACGTTTTTTGGTTACCATGAGCAGTAGTTATTGATTTTGGAAAAATACTTTAATGCTAAAAGAAATCTTGTACAGTAGTAACAGTGTCTGAAAGTATCTGGGCTACTTTGGGGCCTGGAACTAATATCTTTATTTTTTTGGGATTAGGCTATCAAGATGAAATTCATGGTATTGATGGATAAACAAATTTGGTCAAATTAAAGAAACAAAAAGATAGGTTTATTCTTGTTTATGACTTGAGGGTATCGTGAAGATCTGTCATATTAATGCCCTCAGCCTCAAGTAAATCTGCTTCAAAGATGATAAAGATAGCAAATAGAAAAGGAAAAGTTAAGCATCCGAGTCTAAGACATGGAAGAATACCGTAGTCCCTTCCTCCCAAATTTAAGCTTTTGGGAACATTGAGGTGTCCACACTTGGTGGGAAGTTCATAAACTGATCATTTCATATTACACTACCCCATGTCTTATGAAAGAATTAAATGAAACCAAGAGAAATCTGATCAACATGTAGTTTATTGTGGCCTCCACATTTTTCTAGTTTAGCATTAAACAATGTGGTACAATTTGATTATTGTTCAAGTACCTCCATCAAGCTGTGGCAGTCAAAGACAAAGTACAGAGTGGCTCGATCTAGAAGCGTCTTAATAAAAGCCTAGATATTCTTCACGGAATTAACAAAATCAATAGAATACAAAGTATGTATAAAGAAAATAGGTTCCATATAAGTTATGCTGGGAGTTGGGAAAACTTAAAAATTATTTAGGGGCACATGGAAGTAATTAATAGATGAAGGACATAAAAAATATCAATTATACAAGACATACCATAGTTACTTGTCTTCCTTGTGGTCTACGTTGTAATTTGCTAATCTTATTGAATGTCTCAAAGGAACCAAGAATGCAGGGTACCCTTTTCGAAAATTAAGAATGTAGAGTTACATAATATATATTTTAGAAGCAATCAATGTAAAATTGTACCCCTCTGTCCCAATTTGTGAGACACACTAATTTTTTTAGTTTGTCCCAAAAAAGAATGTCACTTTTTATAGCAAAAATAACTTAACATTGAAATTCCCCTTTTACCCTTAATGAAATAATTTATTGCCACACAAATATCTAAGATTTATTTTGGATCACAAATTTTATAAGTCACCTTTCTTTCTTAAACTTGTGTCAAGCCACGCGGTGCTACATAAATTGGGACGGAGGGAGTAAAACATAATTCCTACCTTAGAACATAGGTAATTGGAAAAGAATTCTTCTAACAAATTGAATAATTTATGTAAGCTGAGGACACAAATATTGCTTTTTGAGGTGATCCAGATAAAATGGGGAGGTTTCTGTTATCTGTAGATAACAATGTGGTTCTAAGAGTAGCTGAAAACACTCTGGTATTACTCAACACAGATTTCACCTTTATTCTGGAGTGGTCAATATGGGAAGGTCAAAAAGATTCGGTGAAGTAGTTTTTTTTCTGCTTTTTGAATGATCTACGATATTTTTAAAAAGAAGATAGGAACAGTCTTGGTGGCAGAGGTGTATCCCAGAAGGGGTCACTCGGTTCACTTGAACCCATGCTTCCCTCCTGAAATCATATATAGTAGTGTTATATTTTTTTTAAAAATATTTAAATATAGATACGTGAACCCATAGTTGAAGTATCATACCATGCGATTATGGTTGGGTGCAACTCTCTAAGTGAGGTTAGAAATTTGAATCTTTTATTTCTCTTGTTTTATTTTCCTTTTAAAAATTGGATAACGCTTCTCTAAGTGGTTTGGATAGGTAAAAGTAATTTTGGATCTATAATTTTTAAATTCTAATTATTTTTAGTGATAAGAACCTAAATTTTAAACCGATCAACTTCATATCTTAGATCCAACTGTTCGTAATAGTGTACCCATTATCTCAAAATTCTGGATACGCCTCAGCAGTTGGTGGTTCAGCTCAACTGTACTTCACTCAACTTTCTCCCAAGCAAAAATTTGTTTCTCAAAAATAAAATAAAATCCAAGATTTGCTCTTACGTCATTATGAGTGGTTGACCCATGATTTAAAGACCACATTTGCATCATGCATTAATGTAGGATCTGTCATTGGATTTTTATAATAAGGAATTTTCAGTCAGTTGGTTGGTTCAAAATTAGATTCAGATTGGTGTAATAGATTTTGATATAAAAACCAACTGATTAACAGGCCAAAGTTATTTCATTCCATTAAGTTTTCTTCTCTTCATTTGATTATATTGAATAAAAGTAGAAGAAAATATTAGCAACAACATACCCGGTGAAATCCCAAAAAGCGGGGTCTTGTGAGGATAGCATGGGTAGAGTGTACGCTATCCTTACCACTACCTCGTGGAGGCAGAGAGACTATTTTTAAAAGACCCTTGGTCAAGTGCATCAACCCAAATAACAAAATAAGAAAGCAATGGAGAAAGAGGAACAAATAATAAGAAAAGCAGTGTAAAGTCTACAATACCAACAACAAAATTGTGTGATGATCGAAAATACAATAAACAACATAGGACAAGAACCACAAGGGCATGACTAGTCCTATGAAACACTGTAAAGTCTAAATCTTTATAAGGCAAGGCAACACTCTACCCTTACTAACCTTCTACCCTAATATGCTATCACCATTCCTTTCTGTCTAAGGTGATGTCCTCGGTAATATGAAGTTGCGGAATATCCTGACTACTCACCTCTCCTCGATACTTTTTCGGCTTACCCCTACCCCTGTGCGTATTCCTTACAATCAGCTCTCGCACCTCCTCTGTACTGGGGCGTCAGTGCAGTTTTTCTGCACATATCAAAACCATCTCAGTCTCCCTTTCCTCATTTTGCCCGTCACAGAGGCACACCCACCTTCTCCGGATTACCTCATCCTAATCTTGTCACTTTTAATATGCCCACACATTCATCTCTACATCGTCATCTTCAAAACATACATTTTTTGAATATGTGATTTCTTGACGGACCAACACTCAAACTCATACGACAAGGACGGTCTAATCACCACTTTGTAAAACTTATCTTTAAGTTTAGGTGGTACCTTCTTATCGCACAAGTCCAAAGGCAAGCCACTTTTTCATACATGCCGCTCCATTGTGATGTGTGACATCATCATCATGTCCCCACTACCCTGGAGGCAGACCCGAGGTATTTAAAATTCTCTCTTCGGAATAGACTGTGTGGCAAGCCTCACTTCCACATCCACTTCATCCAATGCAACACTGAAGTTACAATCCAAATATTCCGTTTGGTCCTGCTCAACCCGAACCCTTTAGACTTCAGATAAGTTAAATATAAATAACAATTAAAAAGTGTGCCTATCAGCCAGATAAGTTAGTGAAAAAACATAGATTAGTTTTGATATTTTTTTCTTATATTAAATATCCTTTATAGTATTTCCAATTTATGCTTAATACTTTTTATGTGTATCATATTTCAGAAATTGTAAATTTAAAACATCGAAGGCAAAATTAGCAAGCCATCACAGTTTGGAGTCATAATCAAATCAGAAGAAAATAAATACGTACTCAGTCACTAATTAAAATCACAAAAGAATTGTGCGTTGATTCAACTGAATTCATCACCTATGATTCTAAACTAGGGCTAAAGGAGAGTTGGTGGTATGAAAGAATGAATAAGAAAAGTAAAGAAAATTAAAAAGAAAAACTAAAGGCTTAAGAAAAAAAAAGAATAGGAAAAGGCTGGTAGCGTAAAACCCAGTAAAAAAAAAAATTAGAAGACCACCACCACCACCACAACAACAACATCAACTTACTCTGTGTAATTCCACAAGTGGGGTATGGGGAGAGTTAGGATGTACGCGGATGGTAAAAAAAAAGGAAAAAATAACAAGGAAGTCTGAAGTGGGAAAGTTAGGAGACTAGAGTCAAATTTACTTGAAGTAAAATTAAGTGCATTGAGGGGGATTTCAACTTTGGTTGCAAAGACGAGGACTTGCAAAAAGATTTCTCAACTAGACCACAACACATTCTGCACTTTCAGATGCCTTTGTTTTCATGTCTATTTCATGTTGATATTACATGTATATACAAAGTTTTTCTCAAAGTCTATTGGGAAGGTGGACAATGTAGGCCCCCCCTCTTGTCATTATGCCGGTTCATGTTTGCCAATGATAATTTTTTTCCTATTTGGGAAAGAAACAACAACATACTCCGTGAAACTTTTCTAGTTGGGAAAGTAAAGGATAAAAATAAAAGCAAAAGGTGTGTTGACACTTGAATATATTTTGGAGAATTTATTGGTTTTATGGCGACTGTTTTTGCAAAAATCTTTTCTATTCATATGGCCCTTGATCCAGCAAGGTACTTCTTATTTTCTTCTTACTCCTTTTTAAGCATTTCATCCGACAATTGATATTTATCCATTTATGCTTTTCTATTGCCCAATGCTGTGTTTGCTGCATAGATTCCATGCCATAATGTATTTGCCTAACTGAAGTCAGAGTAATAATTGGAAGAAAAAGCTGTTGGTGATGCTAGAAACTCAAATAGGCTCCCTGTTAGTGCTTAGTGTTTTTAAATGCAGAAACTACACCAGAATCCTGTGGAGCTTTAAGTACAAAGAGCAACTAAACGAGCGGTTTTAGTGAAGACACAAATTAAGGAAGAAACAGAGTTATGATGTAATACAAGCAGAACAACTGTAACAAAAAACAACAATTTTACACAATGGAATTGAAAAACTTCAAAACTTGACATGTAGGAAGTAAAAATCACGTCTATATGCCCTTATCAGAAAAAAATTAGTAAAAGAAAGCATGTCGATGTTAAGAAACCATTTTAAAATTATGTTTCCAGTTGCAGAAAATGAAATTTTTCTAATTTAAATATAGTGCTTGGTTTTCCTCTATATTTCCAATTCCAATTCTTTATCACTAATGTATTTAATTATGACTTTTATATAGAAATTAATAAGACACTTTACCAGCTGTATGCATTGTTTAGTGCTGCCTTAATTAGGTCAAGCTCTTGATTAACAAGACCCATATAAGCTAAGTTGTTCAGACTCTCCAAAAATGTCGGCCGCACCCGTGTCGGATCCTTCAAAAATACACTGTTTTTGGAGGATTTGACACACACTGGTCAACATTTTTGAAGAGTCCGAGCAACATAACATATAAGTGCTTTGGTTCCTGCAGTAGAACACCATGTGAGCAGGGGAATGCATGACCTGCACCTAGCTTTAGGGTTTAAATGCTCTGTAAATGAGCTCAACAACACTATTTGGTTTCTGAAAATCAAAAGTTAAGTGACATCTAGAATTTAGTAATAATTCCAAATTTGTAATACTGATGAGAGGATACATTCTACGGTGTTTTACACTATTTGAATCATACTGTGCTGTTAGCTTATGTGTAGTGGTAAGCTTGATTAAAGAAGTAGGGACTGGGCACAGGATTCCTTATTTACCTACCCAGACAACTACATATGTTTGGAAGAAGAATTTATTAACTCATTAGCTGACGCCTTTTGCAATGAAGACTTCCTCTCTAGTTGGCATTCTCATTTGAAGCTGCAATTTGTTTTTCCCTCTGTCTGACTGTCTCTTGTAAGCTTATGGAAAAATCGGAACCTTTACTCTTTTGTTTTTCTTTGCAGAGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTACTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAG</genome_strand>
        <mrna_strand>TATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATGCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTTATAGGCATGACAGAATTGCAGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACAAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGTAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTACTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558002" ref_strand="+" ref_description="SGN-E558002 [16889]">
      <seq>tgaaattttatctaataagatactgatgccttgatgtttgttgcaaagctatactacaacaaattggaataagcagagagatgtcaatatcttaatctcacagaacccctaacagattcccaaaattaccacctctgtgagaactatatgtgataaattaatcaaaagacaacttagtgaaaattgcattgttgtaataaaggatgactataatcaacatatttgtcccagagcggcttgtacttctcaataccaatcttcaaccagggttttgagttaccattgaagtgcagcacagctcccttttctatcaatttggaatcgacatttgtgtagccaaaacctaagatatgccatgaaggattcaaagcctctgtcaatccatagaaggttagcagtccaggtggtaaagtgccaagcttccacaatgtgcggtccacgttcttttcctgccagtaatggtatatgccagtaacattcctttttcgccactcaaccaaatcaaaaacattcatcccgaagggccaaccacatgcatcaggatcaaaatgttgacgaataagtgggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="-" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="53633" stop="52460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53333" g_stop="52760" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="-" ref_id="SGN-E558002" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53333" e_stop="52760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATTTTATGTAATAAGATACTGGTGCCTTGATGTTTGTTTCAAAAGCTATACTACAACAAATTGGAATAAGCACAAGAGATGACAATATCTTAATCTCACAGAACCCATTACAGATCCCCAAAATTACCACCTCTGTGAGAACTATATATGATTAAATTAAT-TAAAGACAACTTAGTGAAAATTGCATTGTTGTAATAAAGGATGACTATAATCAACATATTTGTCCCAGAGTGGCTTGTACTTCTCAATACCAATCTTCAACCAGGGTTTTGAGTTACCATTGAAGTGCAGCACAGCTCCCTTTTCTATCAATTTGGAGTCGACATTCGTGTAACCAAAACCTAAGACATGCCATGAAGGATTCAAAGCCTCTGTCAATCCATAGAAGGTCAGCAATCCAGGTGGTAAAGTACCAAGCTTCCACAATGTGCGGTCCACGTTCTTGTCCTGCCAGTAATGGTATATGCCAGTAACATTCCTTTTGCGCCACTCAACCAAATCGAAAACATTCATCCCGAAGGCCCACCCACATGCATCAGGATCAAAATGTTGACGAATAAGCGGGTGAG</genome_strand>
        <mrna_strand>TGAAA-TTTTATCTAATAAGATACTGATGCCTTGATGTTTGTTGCAAA-GCTATACTACAACAAATTGGAATAAGCA-GAGAGATGTCAATATCTTAATCTCACAGAACCCCTAACAGATTCCCAAAATTACCACCTCTGTGAGAACTATATGTGA-TAAATTAATCAAAAGACAACTTAGTGAAAATTGCATTGTTGTAATAAAGGATGACTATAATCAACATATTTGTCCCAGAGCGGCTTGTACTTCTCAATACCAATCTTCAACCAGGGTTTTGAGTTACCATTGAAGTGCAGCACAGCTCCCTTTTCTATCAATTTGGAATCGACATTTGTGTAGCCAAAACCTAAGATATGCCATGAAGGATTCAAAGCCTCTGTCAATCCATAGAAGGTTAGCAGTCCAGGTGGTAAAGTGCCAAGCTTCCACAATGTGCGGTCCACGTTCTTTTCCTGCCAGTAATGGTATATGCCAGTAACATTCCTTTTTCGCCACTCAACCAAATCAAAAACATTCATCCCGAAGGGCCAACCACATGCATCAGGATCAAAATGTTGACGAATAAGTGGGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366375" ref_strand="+" ref_description="SGN-E366375 [cLPT-1-M5](-)">
      <seq>atgttttcgatttggttgagtggcgaaaaaggaacgttactggcatataccattactggcaggacaagaacgtggaccgcacattgtggaagcttggcactttaccacctggactgctgaccttctatggattaacagaggctttgaatccttcatggcatgtcttaggttttggttacacgaatgtcgattccaaattgatagaaaagggagctgtgctgcacttcaatggtaactcaaaaccctggttgaagattggtattgagaagtacaagccactctgggacaaatatgttgattatagtcatcctttattacaacaatgcaattttcactaagttgtctttagttaatttaatcttatatagttctcacagaggtggtaattttgggaatctgtaaggggttctgtgagattaagatattgtcatctcttgtgcttattccaatttgttgtagtatagcttttgaaacaaacatcaaggcaccaccagtatcttattacataaaatttcatgttggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="52520" stop="53640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52820" g_stop="53309" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="541"/>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E366375" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52820" e_stop="53309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTTCGATTTGGTTGAGTGGCGCAAAAGGAATGTTACTGGCATATACCATTACTGGCAGGACAAGAACGTGGACCGCACATTGTGGAAGCTTGGTACTTTACCACCTGGATTGCTGACCTTCTATGGATTGACAGAGGCTTTGAATCCTTCATGGCATGTCTTAGGTTTTGGTTACACGAATGTCGACTCCAAATTGATAGAAAAGGGAGCTGTGCTGCACTTCAATGGTAACTCAAAACCCTGGTTGAAGATTGGTATTGAGAAGTACAAGCCACTCTGGGACAAATATGTTGATTATAGTCATCCTTTATTACAACAATGCAATTTTCACTAAGTTGTCTTTAATTAATTTAATCATATATAGTTCTCACAGAGGTGGTAATTTTGGGGATCTGTAATGGGTTCTGTGAGATTAAGATATTGTCATCTCTTGTGCTTATTCCAATTTGTTGTAGTATAGCTTTTGAAACAAACATCAAGGCACCA</genome_strand>
        <mrna_strand>ATGTTTTCGATTTGGTTGAGTGGCGAAAAAGGAACGTTACTGGCATATACCATTACTGGCAGGACAAGAACGTGGACCGCACATTGTGGAAGCTTGGCACTTTACCACCTGGACTGCTGACCTTCTATGGATTAACAGAGGCTTTGAATCCTTCATGGCATGTCTTAGGTTTTGGTTACACGAATGTCGATTCCAAATTGATAGAAAAGGGAGCTGTGCTGCACTTCAATGGTAACTCAAAACCCTGGTTGAAGATTGGTATTGAGAAGTACAAGCCACTCTGGGACAAATATGTTGATTATAGTCATCCTTTATTACAACAATGCAATTTTCACTAAGTTGTCTTTAGTTAATTTAATCTTATATAGTTCTCACAGAGGTGGTAATTTTGGGAATCTGTAAGGGGTTCTGTGAGATTAAGATATTGTCATCTCTTGTGCTTATTCCAATTTGTTGTAGTATAGCTTTTGAAACAAACATCAAGGCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209436" ref_strand="+" ref_description="SGN-E209436 [cLEC-53-D14]">
      <seq>attgattagggttttgcttgcctcttcttcactactctcatatctcattcttcttcctcagctttcaagaagataaattgggaacaccattatggttggtagacgtcagttaccaaaagatttattagtggaggttctattatggttgcctgtggaatcacttgtgcgtttcaaatgtgtctccaaacattggtatgctctcatcacaagtccaagttttgtagaaatgcatttccgtcacaagcgtaatcatgttcatctcttcatttgtaacttaacacttacaagggaatcccattccattgattttcccttgctccctaccaatataggtcacggagttgtccctgaacaaaaaactgtccatcaacttcagtgtacctctgatttctggtccattattggcccagttgatggcctattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="53370" stop="54684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53670" g_stop="53738" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53739" i_stop="54026" i_length="288">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54027" g_stop="54384" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="427" r_length="358" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E209436" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53670" e_stop="53738"/>
          <exon e_start="54027" e_stop="54384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATTAGGGTTTTGCTTGCCTCTTCTTCACTACTCTCATATCTCATTCTTCTTCCTCAGCTTTCAAGGTTAGATTTTCAATTTCTCTTCAATTTTTGTCTATTTTGGTGATAATTTAGGGTTTTGTCGCTCTTTTATGGTTTTTGTATCCCAACTCACTTTGGGATTGAATGCAAGTTGTGGTAAGATAGTCGAAATTGTTGTGTATTTACTTGTAGAGTTGTTGTATATGCTAAGATCTTATTTTAGCGCACTTTTGTTTCTTAATGACTGACACCGTGGGAGAATTGTGAATTTCATTTTTCTATACTTTTGATCACATCATAATAATTTTTCTTGACATTTTTGCTTCACAGAAGATAAATTGGGAACACCATTATGGTTGGTAGACGTCAGTTACCAAAAGATTTATTAGTGGAGGTTCTATTATGGTTGCCTGTGGAATCACTTGTGCGTTTCAAATGTGTCTCCAAACATTGGTATGCTCTCATCACAAGTCCAAGTTTTGTAGAAATGCATTTCCGTCACAAGCGTAATCATGTCCATCTCTTCATTTGTAACTTAACACTTACGAGGGAATCACATTCCATTGATTTTTCCTTGCTCCCTACCAATATAGTTCAAGGTGTTGTCCCTGAACAAAAAACTGTCCATCAGCTTCAGTGTACCTCTGATTTCTGGTCCATTATTGGCCCAGTTGATGGCCTATTCTTG</genome_strand>
        <mrna_strand>ATTGATTAGGGTTTTGCTTGCCTCTTCTTCACTACTCTCATATCTCATTCTTCTTCCTCAGCTTTCAAG................................................................................................................................................................................................................................................................................................AAGATAAATTGGGAACACCATTATGGTTGGTAGACGTCAGTTACCAAAAGATTTATTAGTGGAGGTTCTATTATGGTTGCCTGTGGAATCACTTGTGCGTTTCAAATGTGTCTCCAAACATTGGTATGCTCTCATCACAAGTCCAAGTTTTGTAGAAATGCATTTCCGTCACAAGCGTAATCATGTTCATCTCTTCATTTGTAACTTAACACTTACAAGGGAATCCCATTCCATTGATTTTCCCTTGCTCCCTACCAATATAGGTCACGGAGTTGTCCCTGAACAAAAAACTGTCCATCAACTTCAGTGTACCTCTGATTTCTGGTCCATTATTGGCCCAGTTGATGGCCTATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207892" ref_strand="+" ref_description="SGN-E207892 [cLEC-34-G20]">
      <seq>aaaagatttattagtggaggttctattatggttgcctgtggaatcacttgtgcgtttcaaatgtgtctccaaacattggtatgctctcatcacaagtccaagttttgtagaaatgcatttccgtcacaagcgtaatcatgtccatctcttcatttgtaacttaacacttacgagggaatcacattccattgatttttccttgctccctaccaatatagttcaaggtgttgtccctgaacaaaaaactgtccatcagcttcagtgtacctctgatttctggtccattattggcccagttgatggcctattcttggtggaaaatgcatccttttttgatgaaggcaatgctcacttggctttgtggaatcctgccaccagggaggtctggcctctgcctcctgcgtcctttgagtctcagccattcagagatcacgatgatcagtttgcattggggtttgacccgttgactcaagattataaggttctgtatgtacgaacattttgggatgaagagggactgggcatttcccccgatttctttgttagtgtctattccttacacaacaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="53772" stop="54941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54072" g_stop="54641" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E207892" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54072" e_stop="54641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATTTATTAGTGGAGGTTCTATTATGGTTGCCTGTGGAATCACTTGTGCGTTTCAAATGTGTCTCCAAACATTGGTATGCTCTCATCACAAGTCCAAGTTTTGTAGAAATGCATTTCCGTCACAAGCGTAATCATGTCCATCTCTTCATTTGTAACTTAACACTTACGAGGGAATCACATTCCATTGATTTTTCCTTGCTCCCTACCAATATAGTTCAAGGTGTTGTCCCTGAACAAAAAACTGTCCATCAGCTTCAGTGTACCTCTGATTTCTGGTCCATTATTGGCCCAGTTGATGGCCTATTCTTGGTGGAAAATGCATCCTTTTTTGATGAAGGCAATGCTCACTTGGCTTTGTGGAATCCTGCCACCAGGGAGGTCTGGCCTCTGCCTCCTGCGTCCTTTGAGTCTCAGCCATTCAGAGATCACGATGATCAGTTTGCATTGGGGTTTGACCCGTTGACTCAAGATTATAAGGTTCTGTATGTACGAACATTTTGGGATGAAGAGGGACTGGGCATTTCCCCCGATTTCTTTGTCAGCGTCTATTCCTTACACAACAACTC</genome_strand>
        <mrna_strand>AAAAGATTTATTAGTGGAGGTTCTATTATGGTTGCCTGTGGAATCACTTGTGCGTTTCAAATGTGTCTCCAAACATTGGTATGCTCTCATCACAAGTCCAAGTTTTGTAGAAATGCATTTCCGTCACAAGCGTAATCATGTCCATCTCTTCATTTGTAACTTAACACTTACGAGGGAATCACATTCCATTGATTTTTCCTTGCTCCCTACCAATATAGTTCAAGGTGTTGTCCCTGAACAAAAAACTGTCCATCAGCTTCAGTGTACCTCTGATTTCTGGTCCATTATTGGCCCAGTTGATGGCCTATTCTTGGTGGAAAATGCATCCTTTTTTGATGAAGGCAATGCTCACTTGGCTTTGTGGAATCCTGCCACCAGGGAGGTCTGGCCTCTGCCTCCTGCGTCCTTTGAGTCTCAGCCATTCAGAGATCACGATGATCAGTTTGCATTGGGGTTTGACCCGTTGACTCAAGATTATAAGGTTCTGTATGTACGAACATTTTGGGATGAAGAGGGACTGGGCATTTCCCCCGATTTCTTTGTTAGTGTCTATTCCTTACACAACAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273148" ref_strand="+" ref_description="SGN-E273148 [cLEM-24-P11]">
      <seq>ggcccagttgatggcctattcttggtggaaaatgccatccttttttgatgaaggcaatgctcacttggctttgtggaatcctgccaccagggaggtctggcctctgcctcctgcgtcctttgagtctcagcccttcagagatcaccgatgatcagtttgcattggggtttgacccgttgactcaagattataaggttctgtatgtacgaacattttgggatgaagagggactgggcatttcccccgatttctttgttagtgtctattccttacaccaacaactcttggaaggacctgagacctgatttccctgactgttgtaacttacacaagtccattggcgctacacatctcaacggggtatattattggatctgtgggcttcgagacaatatcttccgcatgtgcacgtttgatatgggcagcgaacaatttggggagatgcaaggcccgtatattccatacacacaatggggaaagcttatgttgcgtggtgactcgctagctatcttagttggtggttttggtcgacaaatgacatccgtatatgatgtgtgggaaatgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="54061" stop="55225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54361" g_stop="54925" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E273148" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54361" e_stop="54925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCCAGTTGATGGCCTATTCTTGGTGGAAAATG-CATCCTTTTTTGATGAAGGCAATGCTCACTTGGCTTTGTGGAATCCTGCCACCAGGGAGGTCTGGCCTCTGCCTCCTGCGTCCTTTGAGTCTCAGCCATTCAGAGATCA-CGATGATCAGTTTGCATTGGGGTTTGACCCGTTGACTCAAGATTATAAGGTTCTGTATGTACGAACATTTTGGGATGAAGAGGGACTGGGCATTTCCCCCGATTTCTTTGTCAGCGTCTATTCCTTACA-CAACAACTCTTGGAAGGACCTGAGACCTGATTTCCCTGACTGTTGTAACTTACACAAGTCCATTGGCGCTACACATCTCAACGGGGTATATTATTGGATCTGTGGGCTTCGAGACAATATCTTCCGCATGTGCACGTTTGATATGGGCAGCGAACAATTTGGGGAGATGCAAGGCCCGTATATTCCATACACACAATGGGGAAAGCTTATGTTGCGTGGTGACTCGCTAGCTATCTTAGTTGGTGGTTTTGGTCGACAAATGACATCCGTATATGATGTGTGGGAAATGAATC</genome_strand>
        <mrna_strand>GGCCCAGTTGATGGCCTATTCTTGGTGGAAAATGCCATCCTTTTTTGATGAAGGCAATGCTCACTTGGCTTTGTGGAATCCTGCCACCAGGGAGGTCTGGCCTCTGCCTCCTGCGTCCTTTGAGTCTCAGCCCTTCAGAGATCACCGATGATCAGTTTGCATTGGGGTTTGACCCGTTGACTCAAGATTATAAGGTTCTGTATGTACGAACATTTTGGGATGAAGAGGGACTGGGCATTTCCCCCGATTTCTTTGTTAGTGTCTATTCCTTACACCAACAACTCTTGGAAGGACCTGAGACCTGATTTCCCTGACTGTTGTAACTTACACAAGTCCATTGGCGCTACACATCTCAACGGGGTATATTATTGGATCTGTGGGCTTCGAGACAATATCTTCCGCATGTGCACGTTTGATATGGGCAGCGAACAATTTGGGGAGATGCAAGGCCCGTATATTCCATACACACAATGGGGAAAGCTTATGTTGCGTGGTGACTCGCTAGCTATCTTAGTTGGTGGTTTTGGTCGACAAATGACATCCGTATATGATGTGTGGGAAATGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203838" ref_strand="+" ref_description="SGN-E203838 [cLEC-17-I15]">
      <seq>aaaattgtctaaaattcttagcaagtcctgatcttggccttgcattataatactcccttcaacgtaatatattggtgagcaacggaccaccagtatggattgttattgtcctttaccagaagatattgtggttgatattttattgaggttgccagtggaaccactcttgcgtttcaaatgtgtgtgcaagcactggtatgctctcatcaaaagtgagagtttcatagagaagcattttcatcacaagaacaatcgttcccgtctcctcatttgcaacttgaaacttgaagcggaagaacacatcgtctttcagtctgctgtagtctcgttgctacctgaaaaaatagtttcgggtgtgacccctgaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="65839" stop="75618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73555" g_stop="73578" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73579" i_stop="74703" i_length="1125">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74704" g_stop="74743" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="64" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74744" i_stop="75010" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75011" g_stop="75318" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="372" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E203838" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73555" e_stop="73578"/>
          <exon e_start="74704" e_stop="74743"/>
          <exon e_start="75011" e_stop="75318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGTGACTTAATTTGTCACCAAGTAAAGATAATACTTGGTCACCAAGTAAAGACAATGCTTTGGTAAGGCAATACTTGGTCACCAAGTTGGATAACAATGTTGTAGAAATGTCACATGTTAAATGTTATACTTTGGCTCAAAGTAACTAAATCTTTTGAAATAATTATAATATTGCTAACGCAGTGTATGGTATTAGTTGTTTCATCTCCAAATTATTGACAAAGTTAATACTTGGTCACTAAGTAAAGACAATGCTTTGGTAAGGCAATACTTGGTCACCAAGTTGGATAACAATGTTGTAGAAATGTCACATGTTAAATGTTATACTTTGGCTCAAAGTAACTAAATCTTTTGAAATAATTATAATATTGCTAACGCAGTGTATGGTATTAGTTGTTTCATCTCCAAATTATTGACAAAGTTAAAGCATCTAAATGAACTTAAATACACTTCGGATCTTGAAATACACCCCTAAATGCTCGTTAAATTTAGGGGTGTTTTCAATGCTTTTCTCGGCTTTTTATTAAGATTCTCTTGCTCCTGCAAGAGTTTGAAACCACTTGTTATGTCTTGTGGTAGGTTGGGGTTTGTATCTAAGTCTAGTTAGTCAAGTAGATGAGTGTTTCAAGTCTATCAATAGTCCGAGGATGAAACTTATAATTTGTGCCAAGTTAAAGGAATTTTTTCAATACTTCTATCTTTTAACTTCAAGATGAATTAGGTTCTGGTTTTACAGTTTGTTTGACCACTATTTGATAGTCAAAATGATTTAAAGATAATGATTTGTTCTGTTGCCATGTTCTGCCTATGTTAATATAGAGGCTTTTGGTGGTTAAGTGTACTTTAACTGCTTAAGTTGTTCTATTACAATGAAAATCATTGCATTAAACCAAGCCTGTTGGTGGATCTAGTATTTACATAAGCTGCTAAGGAGAACGAATACCACATTTACAATTAGTATGCGCAATGTTATCTGAGATGTACAACAAAATTTGGCCCATAGATTTGATACAGTACCATGTCCGTATGTTATATATCTTTATGGAATGATTCGTGTAGGTCATTGTAAAATGTCACCGTATATTCAATCCTCATCCTCACTTCATTTTGCTCTGTTTGATTTTTTCTCTCATTTTTCTGCTGCAGGTCCTGATCTTGGCCTTGCATTATAATACTCCCTTCAACGGTGAGACTTACTTCTGCTGATATTTCCTATAGCTTGTTATCTTCTTTGAGCTTTTTTTCCTATGGTTCTATTCTACTTGATTATGCGAATCTATACTATATAAAATTTTTAGAATCGATCATCAAATGTTATTGGTTTTTTGGACTAATGTTGGGAATGGATCCTCTCGTTAAATGCATGTTTTCTAGACACGTTCTCTTTCTATATGTATCTAAGTTGTCTCATTCTGTTTATTATTCTAAACGAGAGATGTGCTTATATTTCCAGTAATATATTGGTGAGCAACGGACCACCAGTATGGATTGTTATTGTCCTTTACCAGAAGATATTGTGGTTGATATTTTATTGAGGTTGCCAGTGGAACCACTCTTGCGTTTCAAATGTGTGTGCAAGCACTGGTATGCTCTCATCAAAAGTGAGAGTTTCATAGAGAAGCATTTTCATCACAAGAACAATCGTTCCCGTCTCCTCATTTGCAACTTGAAACTTGAAGCGGAAGAACACATCGTCTTTCAGTCTGCTGTAGTCTCCTTGCTACCTGAAAAAATAGTTTCGGGTGTGACCCCTGAAGAAAA</genome_strand>
        <mrna_strand>AAAATTGTCTAAAATTCTTAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGATCTTGGCCTTGCATTATAATACTCCCTTCAACG...........................................................................................................................................................................................................................................................................TAATATATTGGTGAGCAACGGACCACCAGTATGGATTGTTATTGTCCTTTACCAGAAGATATTGTGGTTGATATTTTATTGAGGTTGCCAGTGGAACCACTCTTGCGTTTCAAATGTGTGTGCAAGCACTGGTATGCTCTCATCAAAAGTGAGAGTTTCATAGAGAAGCATTTTCATCACAAGAACAATCGTTCCCGTCTCCTCATTTGCAACTTGAAACTTGAAGCGGAAGAACACATCGTCTTTCAGTCTGCTGTAGTCTCGTTGCTACCTGAAAAAATAGTTTCGGGTGTGACCCCTGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214188" ref_strand="+" ref_description="SGN-E214188 [cLEC-77-K5]">
      <seq>ttggccttgcattataatactcccttcaacgtaatatattggtgagcaacggaccaccagtatggattgttattgtcctttaccagaagatattgtggttgatattttattgaggttgccagtggaaccactcttgcgtttcaaatgtgtgtgcaagcactggtatgctctcatcaaaagtgagagtttcatagagaagcattttcatcacaagaacaatcgttcccgtctcctcatttgcaacttgaaacttgaagcggaagaacacatcgtctttcagtctgctgtagtctcgttgctacctgaaaaaatagtttcgggtgtgacccctgaagaaaaaattctcctttatcttccaagggtcgattatttcaaaattcttgctggcccagttaatggcttattcttagtgcaggaaatcttttttgaacacggtgaacgcttgagtttgtggaatcctgccaccagagagttccgacctctgcctcctgcgccttttgtgactgagcactccttatggaactatgatcatgaatttggattggggtttgaccaactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="74413" stop="75840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74713" g_stop="74743" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74744" i_stop="75010" i_length="267">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75011" g_stop="75540" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="561" r_length="530" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E214188" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74713" e_stop="74743"/>
          <exon e_start="75011" e_stop="75540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCTTGCATTATAATACTCCCTTCAACGGTGAGACTTACTTCTGCTGATATTTCCTATAGCTTGTTATCTTCTTTGAGCTTTTTTTCCTATGGTTCTATTCTACTTGATTATGCGAATCTATACTATATAAAATTTTTAGAATCGATCATCAAATGTTATTGGTTTTTTGGACTAATGTTGGGAATGGATCCTCTCGTTAAATGCATGTTTTCTAGACACGTTCTCTTTCTATATGTATCTAAGTTGTCTCATTCTGTTTATTATTCTAAACGAGAGATGTGCTTATATTTCCAGTAATATATTGGTGAGCAACGGACCACCAGTATGGATTGTTATTGTCCTTTACCAGAAGATATTGTGGTTGATATTTTATTGAGGTTGCCAGTGGAACCACTCTTGCGTTTCAAATGTGTGTGCAAGCACTGGTATGCTCTCATCAAAAGTGAGAGTTTCATAGAGAAGCATTTTCATCACAAGAACAATCGTTCCCGTCTCCTCATTTGCAACTTGAAACTTGAAGCGGAAGAACACATCGTCTTTCAGTCTGCTGTAGTCTCCTTGCTACCTGAAAAAATAGTTTCGGGTGTGACCCCTGAAGAAAAAATTCTCCTTTATCTTCCAAGGGTCGATTATTTCAAAATTCTTGCTGGCCCAGTTAATGGCTTATTCTTAGTGCAGGAAATCTTTTTTGAACACGGTGAACGCTTGAGTTTGTGGAATCCTGCCACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGAC</genome_strand>
        <mrna_strand>TTGGCCTTGCATTATAATACTCCCTTCAACG...........................................................................................................................................................................................................................................................................TAATATATTGGTGAGCAACGGACCACCAGTATGGATTGTTATTGTCCTTTACCAGAAGATATTGTGGTTGATATTTTATTGAGGTTGCCAGTGGAACCACTCTTGCGTTTCAAATGTGTGTGCAAGCACTGGTATGCTCTCATCAAAAGTGAGAGTTTCATAGAGAAGCATTTTCATCACAAGAACAATCGTTCCCGTCTCCTCATTTGCAACTTGAAACTTGAAGCGGAAGAACACATCGTCTTTCAGTCTGCTGTAGTCTCGTTGCTACCTGAAAAAATAGTTTCGGGTGTGACCCCTGAAGAAAAAATTCTCCTTTATCTTCCAAGGGTCGATTATTTCAAAATTCTTGCTGGCCCAGTTAATGGCTTATTCTTAGTGCAGGAAATCTTTTTTGAACACGGTGAACGCTTGAGTTTGTGGAATCCTGCCACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255549" ref_strand="+" ref_description="SGN-E255549 [cLEG-30-J4]">
      <seq>aaatcttttttgaacacggtgaactcttgtttttgtggaatcctgccaccagagagttgcgacctctgcctcctgcgccttttgtgactgagcactccttatggaactatgatcatgaatttggattggggtttgaccaactgactcagcattataaggttgtttggattcgagtattctttgagaaccgggaacaaggacagggacagagacggcgcttttaccttcataattttgtctgtgtctattcctcatgcgataactcatggaagagcctacaattcccttccagttttaccttaggttttccctattccgtcacatatctcaacgggatttattattggatttgtaggagcgacaataatgatatatgcaagattcagtcatttgccatgggcagccaacagttgggggagatgcaaggcccagatattccaggtgaacactgggtgaggctgacactgcgtggagactctcttgcaatgttagtcagtgataagtgtatgacatccatatacgaaatgaaacaagagggaagttggtccaaggtgttaactgttcaaccccgtatagatgctgctcatttgcctaaaggtatttgggagaatgataagattgttttttacctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="75096" stop="76329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75396" g_stop="76029" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E255549" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75396" e_stop="76029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTTTTTGAACACGGTGAACGCTTGAGTTTGTGGAATCCTGCCACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCATAATTTTGTCTGTGTCTATTCCTCATGCGATAACTCATGGAAGAGCCTACAATTCCCTTCCAGTTTTACCTTAGGTTTTCCCTATTCCGTCACATATCTCAACGGGATTTATTATTGGATTTGTAGGAGCGACAATAATGATATATGCAAGATTCAGTCATTTGCCATGGGCAGCCAACAGTTGGGGGAGATGCAAGGCCCAGATATTCCAGGTGAACACTGGGTGAGGCTGACACTGCGTGGAGACTCTCTTGCAATGTTAGTCAGTGATAAGTGTATGACATCCATATACGAAATGAAACAAGAGGGAAGTTGGTCCAAGGTGTTAACTGTTCAACCCCGTATAGATGCTGCTCATTTGCCTAAAGGTATTTGGGAGAATGATAAGATTGTTTTTTACCTCAC</genome_strand>
        <mrna_strand>AAATCTTTTTTGAACACGGTGAACTCTTGTTTTTGTGGAATCCTGCCACCAGAGAGTTGCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCATAATTTTGTCTGTGTCTATTCCTCATGCGATAACTCATGGAAGAGCCTACAATTCCCTTCCAGTTTTACCTTAGGTTTTCCCTATTCCGTCACATATCTCAACGGGATTTATTATTGGATTTGTAGGAGCGACAATAATGATATATGCAAGATTCAGTCATTTGCCATGGGCAGCCAACAGTTGGGGGAGATGCAAGGCCCAGATATTCCAGGTGAACACTGGGTGAGGCTGACACTGCGTGGAGACTCTCTTGCAATGTTAGTCAGTGATAAGTGTATGACATCCATATACGAAATGAAACAAGAGGGAAGTTGGTCCAAGGTGTTAACTGTTCAACCCCGTATAGATGCTGCTCATTTGCCTAAAGGTATTTGGGAGAATGATAAGATTGTTTTTTACCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368258" ref_strand="+" ref_description="SGN-E368258 [TUS-26-A2]">
      <seq>aaatcttttttgaacacggtgaacgcttgagtttgtggaatcctgccaccagagagttccgacctctgcctcctgcgccttttgtgactgagcactccttatggaactatgatcatgaatttggattggggtttgaccaactgactcagcattataaggttgtttggattcgagtattctttgagaaccgggaacaaggacagggacagagacggcgcttttaccttctttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="75096" stop="75935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75396" g_stop="75635" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E368258" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75396" e_stop="75635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTTTTTGAACACGGTGAACGCTTGAGTTTGTGGAATCCTGCCACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCATAATTTTGTCT</genome_strand>
        <mrna_strand>AAATCTTTTTTGAACACGGTGAACGCTTGAGTTTGTGGAATCCTGCCACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378270" ref_strand="+" ref_description="SGN-E378270 [TUS-26-A2]">
      <seq>ttgaacacggtgaacgcttgagtttgtcgaatcctgccaccagagagttccgacctctgcctcctgcgccttttgtgactgagcactccttatggaactatgatcatgaatttggattggggtttgaccaactgactcagcattataaggttgtttggattcgagtattctttgagaaccgggaacaaggacagggacagagacggcgcttttaccttcataattttgtctgtgtctattcctcatgcgataactcatggaagagcctacaattcccttccagttttaccttaggttttccctattccgtcacatatctcaacgggatttattattggatttgtaggagcgacaataatgatatatgcaagattcagtcatttgccatgggcagcccacagttggggggagatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="75105" stop="76119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75405" g_stop="75819" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E378270" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75405" e_stop="75819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACACGGTGAACGCTTGAGTTTGTGGAATCCTGCCACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCATAATTTTGTCTGTGTCTATTCCTCATGCGATAACTCATGGAAGAGCCTACAATTCCCTTCCAGTTTTACCTTAGGTTTTCCCTATTCCGTCACATATCTCAACGGGATTTATTATTGGATTTGTAGGAGCGACAATAATGATATATGCAAGATTCAGTCATTTGCCATGGGCAGCCAACAGTT-GGGGGAGATGCA</genome_strand>
        <mrna_strand>TTGAACACGGTGAACGCTTGAGTTTGTCGAATCCTGCCACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCATAATTTTGTCTGTGTCTATTCCTCATGCGATAACTCATGGAAGAGCCTACAATTCCCTTCCAGTTTTACCTTAGGTTTTCCCTATTCCGTCACATATCTCAACGGGATTTATTATTGGATTTGTAGGAGCGACAATAATGATATATGCAAGATTCAGTCATTTGCCATGGGCAGCCCACAGTTGGGGGGAGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228306" ref_strand="+" ref_description="SGN-E228306 [cLED-3-A7]">
      <seq>caccagagagttccgacctctgcctcctgcgccttttgtgactgagcactccttatggaactatgatcatgaatttggattggggtttgaccaactgactcagcattataaggttgtttggattcgagtattctttgagaaccgggaacaaggacagggacagagacggcgcttttaccttcataattttgtctgtgtctattcctcatgcgataactcatggaagagcctacaattcccttccagttttaccttaggttttccctattccgtcacatatctcaacgggatttattattggatttgtaggagcgacaataatgatatatgcaagattcagtcatttgccatgggcagccaacagttgggggagatgcaaggcccagatattccaggtgaacactgggtgaggctgacactgcgtggagactctcttgcaatgttagtcagtgataagtgtatgacatccatatacgaaatgaaacaagagggaagttggtccaaggtgttaactgttcaaccccgtatagatgctgctcatttgcctaaaggtatttgggagaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="75142" stop="76308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75442" g_stop="76008" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E228306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75442" e_stop="76008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCATAATTTTGTCTGTGTCTATTCCTCATGCGATAACTCATGGAAGAGCCTACAATTCCCTTCCAGTTTTACCTTAGGTTTTCCCTATTCCGTCACATATCTCAACGGGATTTATTATTGGATTTGTAGGAGCGACAATAATGATATATGCAAGATTCAGTCATTTGCCATGGGCAGCCAACAGTTGGGGGAGATGCAAGGCCCAGATATTCCAGGTGAACACTGGGTGAGGCTGACACTGCGTGGAGACTCTCTTGCAATGTTAGTCAGTGATAAGTGTATGACATCCATATACGAAATGAAACAAGAGGGAAGTTGGTCCAAGGTGTTAACTGTTCAACCCCGTATAGATGCTGCTCATTTGCCTAAAGGTATTTGGGAGAATGA</genome_strand>
        <mrna_strand>CACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCATAATTTTGTCTGTGTCTATTCCTCATGCGATAACTCATGGAAGAGCCTACAATTCCCTTCCAGTTTTACCTTAGGTTTTCCCTATTCCGTCACATATCTCAACGGGATTTATTATTGGATTTGTAGGAGCGACAATAATGATATATGCAAGATTCAGTCATTTGCCATGGGCAGCCAACAGTTGGGGGAGATGCAAGGCCCAGATATTCCAGGTGAACACTGGGTGAGGCTGACACTGCGTGGAGACTCTCTTGCAATGTTAGTCAGTGATAAGTGTATGACATCCATATACGAAATGAAACAAGAGGGAAGTTGGTCCAAGGTGTTAACTGTTCAACCCCGTATAGATGCTGCTCATTTGCCTAAAGGTATTTGGGAGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226971" ref_strand="+" ref_description="SGN-E226971 [cLED-1-E7]">
      <seq>caccagagagttccgacctctgcctcctgcgccttttgtgactgagcactccttatggaactatgatcatgaatttggattggggtttgaccaactgactcagcattataaggttgtttggattcgagtattctttgagaaccgggaacaaggacagggacagagacggcgcttttaccttcataattttgtctgtgtctattcctcatgcgataactcatggaagagcctacaattcccttccagttttaccttaggttttccctattccgtcacatatctcaacgggatttattattggatttgtaggagcgacaataatgatatatgcaagattcagtcatttgccatgggcagccaacagttgggggagatgcaaggcccagatattccaggtgaacactgggtgaggctgacactgcgtggagactctcttgcaatgttagtcagtgataagtgtatgacatccatatacgaaatgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="75142" stop="76227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75442" g_stop="75927" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E226971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75442" e_stop="75927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCATAATTTTGTCTGTGTCTATTCCTCATGCGATAACTCATGGAAGAGCCTACAATTCCCTTCCAGTTTTACCTTAGGTTTTCCCTATTCCGTCACATATCTCAACGGGATTTATTATTGGATTTGTAGGAGCGACAATAATGATATATGCAAGATTCAGTCATTTGCCATGGGCAGCCAACAGTTGGGGGAGATGCAAGGCCCAGATATTCCAGGTGAACACTGGGTGAGGCTGACACTGCGTGGAGACTCTCTTGCAATGTTAGTCAGTGATAAGTGTATGACATCCATATACGAAATGAAACA</genome_strand>
        <mrna_strand>CACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCATAATTTTGTCTGTGTCTATTCCTCATGCGATAACTCATGGAAGAGCCTACAATTCCCTTCCAGTTTTACCTTAGGTTTTCCCTATTCCGTCACATATCTCAACGGGATTTATTATTGGATTTGTAGGAGCGACAATAATGATATATGCAAGATTCAGTCATTTGCCATGGGCAGCCAACAGTTGGGGGAGATGCAAGGCCCAGATATTCCAGGTGAACACTGGGTGAGGCTGACACTGCGTGGAGACTCTCTTGCAATGTTAGTCAGTGATAAGTGTATGACATCCATATACGAAATGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242984" ref_strand="+" ref_description="SGN-E242984 [cLED-31-L6]">
      <seq>caccagagagttccgacctctgcctcctgcgccttttgtgactgagcactccttatggaactatgatcatgaatttggattggggtttgaccaactgactcagcattataaggttgtttggattcgagtattctttgagaaccgggaacaaggacagggacagagacggcgcttttaccttcataattttgtctgtgtctattcctcatgcgataactcatggaagagcctacaattcccttccagttttaccttaggttttccctattccgtcacatatctcaacgggatttattattggatttgtaggagcgacaataatgatatatgcaagattcagtcatttgccatgggcagccaacagtttggggagatgcaaggcccagatattccaggtgaacactgggtgaggctgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="75142" stop="76160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75442" g_stop="75860" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E242984" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75442" e_stop="75860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCATAATTTTGTCTGTGTCTATTCCTCATGCGATAACTCATGGAAGAGCCTACAATTCCCTTCCAGTTTTACCTTAGGTTTTCCCTATTCCGTCACATATCTCAACGGGATTTATTATTGGATTTGTAGGAGCGACAATAATGATATATGCAAGATTCAGTCATTTGCCATGGGCAGCCAACAGTTGGGGGAGATGCAAGGCCCAGATATTCCAGGTGAACACTGGGTGAGGCTGACAC</genome_strand>
        <mrna_strand>CACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCATAATTTTGTCTGTGTCTATTCCTCATGCGATAACTCATGGAAGAGCCTACAATTCCCTTCCAGTTTTACCTTAGGTTTTCCCTATTCCGTCACATATCTCAACGGGATTTATTATTGGATTTGTAGGAGCGACAATAATGATATATGCAAGATTCAGTCATTTGCCATGGGCAGCCAACAGTTTGGGGAGATGCAAGGCCCAGATATTCCAGGTGAACACTGGGTGAGGCTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379888" ref_strand="+" ref_description="SGN-E379888 [TUS-3-D17](-)">
      <seq>caaattccctcccagttctatcttatctgcaccccttgatgccacttatctcaacggagtttattattggctttcaaggggcctcgatgacatcttcatgattctctcgtttgacatggtctgtgaacagtttggggagatgcaagtccagatattccaactgaacattgggggacgcttacattgcatggcggctcacttgtaatgttaacaagtggccaacctatgacatccatatatgatgtgtgggtaatgaaacaagagggaaattggtccaaagttcttactattcaacctcatatagatgctcgttggcctatcaacatctgggataacaataagatggttttcgagaacatggaaacttcacagctagtgctatatgaccctaaaacaagacgtgttacagatcttggatttcagctggaccctaacattgatggctgttgggttttcaattacaaggagagcctagttccaataaagagaggaagcaacactcagggcgaggataatgcagtcaagcaaattgaacactacttcaatactctaccagcggatgaggcctcatcttagagattatacgtacaaaatatttctagtgataaaaatggttaaacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0213A03-UOqvk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0213A03.1" temp_strand="+" temp_description="C04HBa0213A03.1  CU914527.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0213A03 sequenced_by:sanger upload_account_name:uk">
        <position start="104941" stop="106164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105241" g_stop="105864" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0213A03.1" gen_strand="+" ref_id="SGN-E379888" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0213A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105241" e_stop="105864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCCCTCCCAGTTCTATCTTATCTGCACCCCTTGATGCCACTTATCTCAACGGAGTTTATTATTGGCTTTCAAGGGGCCTCGATGGCATCTTCATGATTCTCTCGTTTGACATGGTCTGTGAACAGTTTGGGGAGATGCAAGTCCCAGATATTCCAACTAAACATTGGGGGACGCTTACATTGCATGGCGGCTCACTTGTAATGTTAACAAGTGGCCAACCTATGACATCCATATATGATGTGTGGGTAATGAAACAAGAGGGAAATTGGTCCAAAGTTCATACTATTCAACCTCATATAGATGCTCATTGGCCTATCAACATCTGGGATAACAATAAGATGGTTTTCGAGAACATGGAAACTTCACAGCTAGTGCTATATGACCCTAAAACAAGACGTGTTACAGATCTTGGATTTCAGCTGGACCCTAACATTGATGGCTGTTGGGTTTTCAATTACAAGGAGAGCTTAGTTCCAATAAAGAGAGGAAGCAACACTCAGGGTGAGGATAATGCAGTCAAGCAAATTGAACACTACTTCAATACTCTACCAGCGGATGAGGCCTCATCTTAGAGATTATACGTACAAAATATTTCTAGTGATAAAAATGGTTAAACAGA</genome_strand>
        <mrna_strand>CAAATTCCCTCCCAGTTCTATCTTATCTGCACCCCTTGATGCCACTTATCTCAACGGAGTTTATTATTGGCTTTCAAGGGGCCTCGATGACATCTTCATGATTCTCTCGTTTGACATGGTCTGTGAACAGTTTGGGGAGATGCAAGT-CCAGATATTCCAACTGAACATTGGGGGACGCTTACATTGCATGGCGGCTCACTTGTAATGTTAACAAGTGGCCAACCTATGACATCCATATATGATGTGTGGGTAATGAAACAAGAGGGAAATTGGTCCAAAGTTCTTACTATTCAACCTCATATAGATGCTCGTTGGCCTATCAACATCTGGGATAACAATAAGATGGTTTTCGAGAACATGGAAACTTCACAGCTAGTGCTATATGACCCTAAAACAAGACGTGTTACAGATCTTGGATTTCAGCTGGACCCTAACATTGATGGCTGTTGGGTTTTCAATTACAAGGAGAGCCTAGTTCCAATAAAGAGAGGAAGCAACACTCAGGGCGAGGATAATGCAGTCAAGCAAATTGAACACTACTTCAATACTCTACCAGCGGATGAGGCCTCATCTTAGAGATTATACGTACAAAATATTTCTAGTGATAAAAATGGTTAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>92</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="118" PGL_stop="1291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118" e_stop="1291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="118" e_stop="1291" e_length="1174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118" stop="1001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139" stop="567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="196" stop="843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="216" stop="861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="678" stop="1291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="678" stop="1291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="679" stop="915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="876" stop="1291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="876" stop="1291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="876" stop="1291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="876" stop="1291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="876" stop="1291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="876" stop="1291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="876" stop="1036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="877" stop="1291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATCTCCTATTCAACTCCATTTTCATATCCTCTTTCTATGCAACTAACCATGGATAGAGAACAAGAAGAGATGCAATTCCTAGGCCTCTTTGATATCTACATAGAAGCCTACAAAGTCATCTACCAATGGAAGAAAATTTTCAGCCAAATCACCCTATCTTTGATCCTTCCTATGTCCTTCATCTTCTTAGCTCACATGGAAGTTTACCATCTTTTCTTTTCTGACCTTAAACACTCTGAATCTCAGCTCAGACATACTCACACGGGCACGGCAAAATACAACAGGATCTCTGATCACATAGATTCAGAGATAACCTCTCTATGGCTTTTCATAATTGTCTACTTCACTATCCTCATCATCTTCTCCCTTCTATCTACCTCTGCAGTGGTTTACACAATTGCTTCTATATACACGTCACGTGAAGTCGGTTACAAGAAAGTTATGAATGTTGTTCCTAAAGTTTGGAAGAGAGTTATGGTGACTTTCTTGTGTGCTTTCCTTTGTTTCTTCATCTACAACCTTGTCTCCTTCTTTCTCTTAGCTTTATGGTTTGTATGGGCTTTCAGCATGCGGGGTGAAAATCATGGTCTTGCTAACTTTATTTTTGTAATCATGGCGATTGTTTATGTTGTTGGATCTGTGTACCTTTCGGTTATATGGCACTTAGCTACTGTGGTAACTGTGTTAGAGGATTCATATGGAGTGAAAGCCATGATCAAAAGCAAGGATTTGTTAAAGGGGAAGATGAGAATAGCCTTGGTTTTCTTTTTCAAGTTCAATCTCTCACTTGGTATCTTGAACTTTGTTTTCAAGAAGTTTGTGGTGCATGGAAGCCATCATATGCATCTAGGGATGTTGTATAGAGTAGGGGTTGGGTTGTTTTGTCTTCTGTTATTGTTTGCTTTGATACTCTTTGGTTTGGTGATTCAAACAATTATTTACTTTGTTTGTAAGTCCTATCACCATGAGAACATTGACAAGTCTGCACTTTCTGATCATCTTGAAGTTTATTTGGGAGAGTATGAGCCTTTGAAGTCTCAAGATGTGCAAATGGAGAGTTATCAAGTTTAAAAAATTTTACTTGTATCTTCTGTGGGTGAAACATTTCTCTATGTATTTGACTTTTTCAATGGATGATATTTATGAGAATTATTATGATAGAAAAGATTTA</gDNA_template>
            <first_frame> *  I  S  Y  S  T  P  F  S  Y  P  L  S  M  Q  L  T  M  D  R  E  Q  E  E  M  Q  F  L  G  L  F  D  I  Y  I  E  A  Y  K  V  I  Y  Q  W  K  K  I  F  S  Q  I  T  L  S  L  I  L  P  M  S  F  I  F  L  A  H  M  E  V  Y  H  L  F  F  S  D  L  K  H  S  E  S  Q  L  R  H  T  H  T  G  T  A  K  Y  N  R  I  S  D  H  I  D  S  E  I  T  S  L  W  L  F  I  I  V  Y  F  T  I  L  I  I  F  S  L  L  S  T  S  A  V  V  Y  T  I  A  S  I  Y  T  S  R  E  V  G  Y  K  K  V  M  N  V  V  P  K  V  W  K  R  V  M  V  T  F  L  C  A  F  L  C  F  F  I  Y  N  L  V  S  F  F  L  L  A  L  W  F  V  W  A  F  S  M  R  G  E  N  H  G  L  A  N  F  I  F  V  I  M  A  I  V  Y  V  V  G  S  V  Y  L  S  V  I  W  H  L  A  T  V  V  T  V  L  E  D  S  Y  G  V  K  A  M  I  K  S  K  D  L  L  K  G  K  M  R  I  A  L  V  F  F  F  K  F  N  L  S  L  G  I  L  N  F  V  F  K  K  F  V  V  H  G  S  H  H  M  H  L  G  M  L  Y  R  V  G  V  G  L  F  C  L  L  L  L  F  A  L  I  L  F  G  L  V  I  Q  T  I  I  Y  F  V  C  K  S  Y  H  H  E  N  I  D  K  S  A  L  S  D  H  L  E  V  Y  L  G  E  Y  E  P  L  K  S  Q  D  V  Q  M  E  S  Y  Q  V  *  K  I  L  L  V  S  S  V  G  E  T  F  L  Y  V  F  D  F  F  N  G  *  Y  L  *  E  L  L  *  *  K  R  F  </first_frame>
            <second_frame>  K  S  P  I  Q  L  H  F  H  I  L  F  L  C  N  *  P  W  I  E  N  K  K  R  C  N  S  *  A  S  L  I  S  T  *  K  P  T  K  S  S  T  N  G  R  K  F  S  A  K  S  P  Y  L  *  S  F  L  C  P  S  S  S  *  L  T  W  K  F  T  I  F  S  F  L  T  L  N  T  L  N  L  S  S  D  I  L  T  R  A  R  Q  N  T  T  G  S  L  I  T  *  I  Q  R  *  P  L  Y  G  F  S  *  L  S  T  S  L  S  S  S  S  S  P  F  Y  L  P  L  Q  W  F  T  Q  L  L  L  Y  T  R  H  V  K  S  V  T  R  K  L  *  M  L  F  L  K  F  G  R  E  L  W  *  L  S  C  V  L  S  F  V  S  S  S  T  T  L  S  P  S  F  S  *  L  Y  G  L  Y  G  L  S  A  C  G  V  K  I  M  V  L  L  T  L  F  L  *  S  W  R  L  F  M  L  L  D  L  C  T  F  R  L  Y  G  T  *  L  L  W  *  L  C  *  R  I  H  M  E  *  K  P  *  S  K  A  R  I  C  *  R  G  R  *  E  *  P  W  F  S  F  S  S  S  I  S  H  L  V  S  *  T  L  F  S  R  S  L  W  C  M  E  A  I  I  C  I  *  G  C  C  I  E  *  G  L  G  C  F  V  F  C  Y  C  L  L  *  Y  S  L  V  W  *  F  K  Q  L  F  T  L  F  V  S  P  I  T  M  R  T  L  T  S  L  H  F  L  I  I  L  K  F  I  W  E  S  M  S  L  *  S  L  K  M  C  K  W  R  V  I  K  F  K  K  F  Y  L  Y  L  L  W  V  K  H  F  S  M  Y  L  T  F  S  M  D  D  I  Y  E  N  Y  Y  D  R  K  D  L </second_frame>
            <third_frame>   N  L  L  F  N  S  I  F  I  S  S  F  Y  A  T  N  H  G  *  R  T  R  R  D  A  I  P  R  P  L  *  Y  L  H  R  S  L  Q  S  H  L  P  M  E  E  N  F  Q  P  N  H  P  I  F  D  P  S  Y  V  L  H  L  L  S  S  H  G  S  L  P  S  F  L  F  *  P  *  T  L  *  I  S  A  Q  T  Y  S  H  G  H  G  K  I  Q  Q  D  L  *  S  H  R  F  R  D  N  L  S  M  A  F  H  N  C  L  L  H  Y  P  H  H  L  L  P  S  I  Y  L  C  S  G  L  H  N  C  F  Y  I  H  V  T  *  S  R  L  Q  E  S  Y  E  C  C  S  *  S  L  E  E  S  Y  G  D  F  L  V  C  F  P  L  F  L  H  L  Q  P  C  L  L  L  S  L  S  F  M  V  C  M  G  F  Q  H  A  G  *  K  S  W  S  C  *  L  Y  F  C  N  H  G  D  C  L  C  C  W  I  C  V  P  F  G  Y  M  A  L  S  Y  C  G  N  C  V  R  G  F  I  W  S  E  S  H  D  Q  K  Q  G  F  V  K  G  E  D  E  N  S  L  G  F  L  F  Q  V  Q  S  L  T  W  Y  L  E  L  C  F  Q  E  V  C  G  A  W  K  P  S  Y  A  S  R  D  V  V  *  S  R  G  W  V  V  L  S  S  V  I  V  C  F  D  T  L  W  F  G  D  S  N  N  Y  L  L  C  L  *  V  L  S  P  *  E  H  *  Q  V  C  T  F  *  S  S  *  S  L  F  G  R  V  *  A  F  E  V  S  R  C  A  N  G  E  L  S  S  L  K  N  F  T  C  I  F  C  G  *  N  I  S  L  C  I  *  L  F  Q  W  M  I  F  M  R  I  I  M  I  E  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121" stop="1191"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISYSTPFSYPLSMQLTMDREQEEMQFLGLFDIYIEAYKVIYQWKKIFSQITLSLILPMSFIFLAHMEVYHLFFSDLKHSESQLRHTHTGTAKYNRISDHIDSEITSLWLFIIVYFTILIIFSLLSTSAVVYTIASIYTSREVGYKKVMNVVPKVWKRVMVTFLCAFLCFFIYNLVSFFLLALWFVWAFSMRGENHGLANFIFVIMAIVYVVGSVYLSVIWHLATVVTVLEDSYGVKAMIKSKDLLKGKMRIALVFFFKFNLSLGILNFVFKKFVVHGSHHMHLGMLYRVGVGLFCLLLLFALILFGLVIQTIIYFVCKSYHHENIDKSALSDHLEVYLGEYEPLKSQDVQMESYQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="1147" PGL_stop="391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1147" e_stop="391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="1147" e_stop="391" e_length="757"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1147" stop="391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1147" stop="508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTCATACTCTCCCAAATAAACTTCAAGATGATCAGAAAGTGCAGACTTGTCAATGTTCTCATGGTGATAGGACTTACAAACAAAGTAAATAATTGTTTGAATCACCAAACCAAAGAGTATCAAAGCAAACAATAACAGAAGACAAAACAACCCAACCCCTACTCTATACAACATCCCTAGATGCATATGATGGCTTCCATGCACCACAAACTTCTTGAAAACAAAGTTCAAGATACCAAGTGAGAGATTGAACTTGAAAAAGAAAACCAAGGCTATTCTCATCTTCCCCTTTAACAAATCCTTGCTTTTGATCATGGCTTTCACTCCATATGAATCCTCTAACACAGTTACCACAGTAGCTAAGTGCCATATAACCGAAAGGTACACAGATCCAACAACATAAACAATCGCCATGATTACAAAAATAAAGTTAGCAAGACCATGATTTTCACCCCGCATGCTGAAAGCCCATACAAACCATAAAGCTAAGAGAAAGAAGGAGACAAGGTTGTAGATGAAGAAACAAAGGAAAGCACACAAGAAAGTCACCATAACTCTCTTCCAAACTTTAGGAACAACATTCATAACTTTCTTGTAACCGACTTCACGTGACGTGTATATAGAAGCAATTGTGTAAACCACTGCAGAGGTAGATAGAAGGGAGAAGATGATGAGGATAGTGAAGTAGACAATTATGAAAAGCCATAGAGAGGTTATCTCTGAATCTATGTGATCAGAGATCCTGTTGTATTTTGC</gDNA_template>
            <first_frame> A  H  T  L  P  N  K  L  Q  D  D  Q  K  V  Q  T  C  Q  C  S  H  G  D  R  T  Y  K  Q  S  K  *  L  F  E  S  P  N  Q  R  V  S  K  Q  T  I  T  E  D  K  T  T  Q  P  L  L  Y  T  T  S  L  D  A  Y  D  G  F  H  A  P  Q  T  S  *  K  Q  S  S  R  Y  Q  V  R  D  *  T  *  K  R  K  P  R  L  F  S  S  S  P  L  T  N  P  C  F  *  S  W  L  S  L  H  M  N  P  L  T  Q  L  P  Q  *  L  S  A  I  *  P  K  G  T  Q  I  Q  Q  H  K  Q  S  P  *  L  Q  K  *  S  *  Q  D  H  D  F  H  P  A  C  *  K  P  I  Q  T  I  K  L  R  E  R  R  R  Q  G  C  R  *  R  N  K  G  K  H  T  R  K  S  P  *  L  S  S  K  L  *  E  Q  H  S  *  L  S  C  N  R  L  H  V  T  C  I  *  K  Q  L  C  K  P  L  Q  R  *  I  E  G  R  R  *  *  G  *  *  S  R  Q  L  *  K  A  I  E  R  L  S  L  N  L  C  D  Q  R  S  C  C  I  L  </first_frame>
            <second_frame>  L  I  L  S  Q  I  N  F  K  M  I  R  K  C  R  L  V  N  V  L  M  V  I  G  L  T  N  K  V  N  N  C  L  N  H  Q  T  K  E  Y  Q  S  K  Q  *  Q  K  T  K  Q  P  N  P  Y  S  I  Q  H  P  *  M  H  M  M  A  S  M  H  H  K  L  L  E  N  K  V  Q  D  T  K  *  E  I  E  L  E  K  E  N  Q  G  Y  S  H  L  P  L  *  Q  I  L  A  F  D  H  G  F  H  S  I  *  I  L  *  H  S  Y  H  S  S  *  V  P  Y  N  R  K  V  H  R  S  N  N  I  N  N  R  H  D  Y  K  N  K  V  S  K  T  M  I  F  T  P  H  A  E  S  P  Y  K  P  *  S  *  E  K  E  G  D  K  V  V  D  E  E  T  K  E  S  T  Q  E  S  H  H  N  S  L  P  N  F  R  N  N  I  H  N  F  L  V  T  D  F  T  *  R  V  Y  R  S  N  C  V  N  H  C  R  G  R  *  K  G  E  D  D  E  D  S  E  V  D  N  Y  E  K  P  *  R  G  Y  L  *  I  Y  V  I  R  D  P  V  V  F  C </second_frame>
            <third_frame>   S  Y  S  P  K  *  T  S  R  *  S  E  S  A  D  L  S  M  F  S  W  *  *  D  L  Q  T  K  *  I  I  V  *  I  T  K  P  K  S  I  K  A  N  N  N  R  R  Q  N  N  P  T  P  T  L  Y  N  I  P  R  C  I  *  W  L  P  C  T  T  N  F  L  K  T  K  F  K  I  P  S  E  R  L  N  L  K  K  K  T  K  A  I  L  I  F  P  F  N  K  S  L  L  L  I  M  A  F  T  P  Y  E  S  S  N  T  V  T  T  V  A  K  C  H  I  T  E  R  Y  T  D  P  T  T  *  T  I  A  M  I  T  K  I  K  L  A  R  P  *  F  S  P  R  M  L  K  A  H  T  N  H  K  A  K  R  K  K  E  T  R  L  *  M  K  K  Q  R  K  A  H  K  K  V  T  I  T  L  F  Q  T  L  G  T  T  F  I  T  F  L  *  P  T  S  R  D  V  Y  I  E  A  I  V  *  T  T  A  E  V  D  R  R  E  K  M  M  R  I  V  K  *  T  I  M  K  S  H  R  E  V  I  S  E  S  M  *  S  E  I  L  L  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="956" stop="744"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLPCTTNFLKTKFKIPSERLNLKKKTKAILIFPFNKSLLLIMAFTPYESSNTVTTVAKCHITERYTDPTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="8251" PGL_stop="1756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8251" e_stop="8135"/>
            <exon e_start="2346" e_stop="1756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.648" e_score="0.983"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="8251" e_stop="8135" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.648">
            <gDNA_intron_boundary i_start="8134" i_stop="2347" i_length="5788"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="2346" e_stop="1756" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8251" stop="8135"/>
              <exon start="2346" stop="1798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8251" stop="8135"/>
              <exon start="2346" stop="1815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8249" stop="8135"/>
              <exon start="2346" stop="1821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8248" stop="8135"/>
              <exon start="2346" stop="1820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8248" stop="8135"/>
              <exon start="2346" stop="1910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8246" stop="8135"/>
              <exon start="2346" stop="2011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8207" stop="8135"/>
              <exon start="2346" stop="1756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAACAGAAACTCCGCATTTTCAAATTAAGCCGTCTCCGGTGCTTCAGCCCATTCTTCCCGTATCTTTCTCCGGTGAGTCTCCGAGCAATCAGTTCCTCCGGCTGAAATCTAGCG : GTAGAAAAATATGAGTATAAAACCAACTGTTGCATTGAGAGCCATTCTCGTTGGAGGAATAGCTGCCTTTGCAAAAATTGGTGGTGCCGTTAAAGCTGCAGGAGGAGTAAAATTAGGTGCAGCTGCTGCTGCCATGACTGCTGCAGCAACAGCAGCTGTATCAGGATCCAAACAGGAAGAAAAGAAGGATGGTTCTCAGCAGTTGTCGTCCAAGTGATGCACACAACTCATGTGTTATTTTTTTTTCTTCAATGTAACGTCTGAACTGTCAAAATAAAAGTTGTAGGGTGGTGGAATATGCCAGTCAAATGGTTTCCCAGGATGATCTTTAATAGCTAAGATATATGGGTTCTTACAACTGCGGGACTCGTTAGTTCTGTACTAGTGGAAGTTGGAGTTTGTTGAAGTGATCACTCAGTGCCTGTGCTAGATGCAATTTGTTTTCCCTCCAGTACCTGAGGTATGTAACTGTTACCAGTAAAGGATATATTACTGCTTCCGTGATACTTTCAAAAGCAAAATATATGTTTTTATAAGGTTTTATAACATGAGATCTGTCAATAAACCCAGATGGAACTTCTGGTTCTGGGC</gDNA_template>
            <first_frame> N  K  Q  K  L  R  I  F  K  L  S  R  L  R  C  F  S  P  F  F  P  Y  L  S  P  V  S  L  R  A  I  S  S  S  G  *  N  L  A  :  V  E  K  Y  E  Y  K  T  N  C  C  I  E  S  H  S  R  W  R  N  S  C  L  C  K  N  W  W  C  R  *  S  C  R  R  S  K  I  R  C  S  C  C  C  H  D  C  C  S  N  S  S  C  I  R  I  Q  T  G  R  K  E  G  W  F  S  A  V  V  V  Q  V  M  H  T  T  H  V  L  F  F  F  L  Q  C  N  V  *  T  V  K  I  K  V  V  G  W  W  N  M  P  V  K  W  F  P  R  M  I  F  N  S  *  D  I  W  V  L  T  T  A  G  L  V  S  S  V  L  V  E  V  G  V  C  *  S  D  H  S  V  P  V  L  D  A  I  C  F  P  S  S  T  *  G  M  *  L  L  P  V  K  D  I  L  L  L  P  *  Y  F  Q  K  Q  N  I  C  F  Y  K  V  L  *  H  E  I  C  Q  *  T  Q  M  E  L  L  V  L  G </first_frame>
            <second_frame>  T  N  R  N  S  A  F  S  N  *  A  V  S  G  A  S  A  H  S  S  R  I  F  L  R  *  V  S  E  Q  S  V  P  P  A  E  I  *  R :   *  K  N  M  S  I  K  P  T  V  A  L  R  A  I  L  V  G  G  I  A  A  F  A  K  I  G  G  A  V  K  A  A  G  G  V  K  L  G  A  A  A  A  A  M  T  A  A  A  T  A  A  V  S  G  S  K  Q  E  E  K  K  D  G  S  Q  Q  L  S  S  K  *  C  T  Q  L  M  C  Y  F  F  F  F  N  V  T  S  E  L  S  K  *  K  L  *  G  G  G  I  C  Q  S  N  G  F  P  G  *  S  L  I  A  K  I  Y  G  F  L  Q  L  R  D  S  L  V  L  Y  *  W  K  L  E  F  V  E  V  I  T  Q  C  L  C  *  M  Q  F  V  F  P  P  V  P  E  V  C  N  C  Y  Q  *  R  I  Y  Y  C  F  R  D  T  F  K  S  K  I  Y  V  F  I  R  F  Y  N  M  R  S  V  N  K  P  R  W  N  F  W  F  W   </second_frame>
            <third_frame>   Q  T  E  T  P  H  F  Q  I  K  P  S  P  V  L  Q  P  I  L  P  V  S  F  S  G  E  S  P  S  N  Q  F  L  R  L  K  S  S   : G  R  K  I  *  V  *  N  Q  L  L  H  *  E  P  F  S  L  E  E  *  L  P  L  Q  K  L  V  V  P  L  K  L  Q  E  E  *  N  *  V  Q  L  L  L  P  *  L  L  Q  Q  Q  Q  L  Y  Q  D  P  N  R  K  K  R  R  M  V  L  S  S  C  R  P  S  D  A  H  N  S  C  V  I  F  F  S  S  M  *  R  L  N  C  Q  N  K  S  C  R  V  V  E  Y  A  S  Q  M  V  S  Q  D  D  L  *  *  L  R  Y  M  G  S  Y  N  C  G  T  R  *  F  C  T  S  G  S  W  S  L  L  K  *  S  L  S  A  C  A  R  C  N  L  F  S  L  Q  Y  L  R  Y  V  T  V  T  S  K  G  Y  I  T  A  S  V  I  L  S  K  A  K  Y  M  F  L  *  G  F  I  T  *  D  L  S  I  N  P  D  G  T  S  G  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2342" stop="2130"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNMSIKPTVALRAILVGGIAAFAKIGGAVKAAGGVKLGAAAAAMTAAATAAVSGSKQEEKKDGSQQLSSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="11992" PGL_stop="16740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11992" e_stop="12314"/>
            <exon e_start="13099" e_stop="13167"/>
            <exon e_start="14333" e_stop="14398"/>
            <exon e_start="15326" e_stop="15447"/>
            <exon e_start="15629" e_stop="15757"/>
            <exon e_start="16410" e_stop="16740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.978"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="11992" e_stop="12314" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12315" i_stop="13098" i_length="784"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13099" e_stop="13167" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13168" i_stop="14332" i_length="1165"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14333" e_stop="14398" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.972">
            <gDNA_intron_boundary i_start="14399" i_stop="15325" i_length="927"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15326" e_stop="15447" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.885" acc_prob="0.994">
            <gDNA_intron_boundary i_start="15448" i_stop="15628" i_length="181"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15629" e_stop="15757" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15758" i_stop="16409" i_length="652"/>
          </intron>
          <exon e_serial="6" e_score="0.979">
            <gDNA_exon_boundary e_start="16410" e_stop="16740" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11992" stop="12314"/>
              <exon start="13099" stop="13167"/>
              <exon start="14333" stop="14398"/>
              <exon start="15326" stop="15447"/>
              <exon start="15629" stop="15724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12026" stop="12314"/>
              <exon start="13099" stop="13167"/>
              <exon start="14333" stop="14398"/>
              <exon start="15326" stop="15447"/>
              <exon start="15629" stop="15702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13113" stop="13167"/>
              <exon start="14333" stop="14398"/>
              <exon start="15326" stop="15447"/>
              <exon start="15629" stop="15757"/>
              <exon start="16410" stop="16636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13142" stop="13167"/>
              <exon start="14333" stop="14398"/>
              <exon start="15326" stop="15447"/>
              <exon start="15629" stop="15757"/>
              <exon start="16410" stop="16608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14334" stop="14398"/>
              <exon start="15326" stop="15447"/>
              <exon start="15629" stop="15757"/>
              <exon start="16410" stop="16646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14334" stop="14398"/>
              <exon start="15326" stop="15447"/>
              <exon start="15629" stop="15757"/>
              <exon start="16410" stop="16644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15376" stop="15447"/>
              <exon start="15629" stop="15757"/>
              <exon start="16410" stop="16740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15437" stop="15447"/>
              <exon start="15629" stop="15757"/>
              <exon start="16410" stop="16682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443364" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTCTTTTTTTTCTTCTTCGATTTCGTTTTTTAATTTTGTTGATTTGATATATAGTTTTTTTTTGAATCTGTGTTTATTGATTGTTGTTCTGAATTTTATTTTTTTTGGATCTTAGGGTTTTTTAGGTAGATTGAGTATCTGGGTATAACTGGAAATTTGAAATTGTTGGAAGGTTTTTGAGAAAATGGAACCGTCTTCGTCTTCGCCGGAGTTTGATTACTTGTTTAAGCTGTTGTTGATTGGAGATTCAGGAGTAGGGAAGAGTAGTTTGTTGCTCAGTTTCACTTCTGATGCCTTTGAGGATCTTTCTCCAACTATTG : GTGTGGACTTCAAGGTAAAACATGTCACCCTCGGGGGGAAGAAGTTGAAGCTTGCTATATGGGATACAG : CTGGACAGGAAAGATTTAGGACTTTAACGAGTTCATACTACCGAGGAGCTCAAGGAATAATCATGG : TTTATGATGTAACAAGGCGAGACACATTTACTAATCTCTCTGATATATGGGCCAAAGAAATCGACCTGTACTCAACAAATCAGGAGTGCATCAAGATGCTTGTAGGCAACAAAGTTGATAAG : GAGAGTGAAAGGGTTGTCAGCAAAAAAGAGGGAATTGATTTTGCCAGGGAATATGGATGTCTTTTCATCGAATGCAGTGCAAAGACGAGGGTTAATGTGGAACAGTGCTTTGAGGAGCTTGTGCTGAAG : ATTTTGGACACTCCAAGTCTCTTGGCTGAAGGTTCAGCTGGCGTCAGGAAAAATATATTTAGACAGAAACCTCCGGAATCTGATGCATCAACAAGTGGCTGTTGTTGAGATGGACGTTTCTTTGTTTTCTTCACGCTTTCCCTTTCTTTTGTAAAACAAAATGATGTAATTACTTGGAGATGACGAACTCTGTTTCTATCCTTCACGTTTGTAGTTTGTTTGACTGAATGTTCTTCTGTTGTCCTCTTGCTCTTAATTTGATATTTGAAGAAGATGAGGAGTTCTTTTCTATTTGTGATTGATTAAGAAAGATTTTATTTACCACAGCAGT</gDNA_template>
            <first_frame> L  F  F  F  F  F  F  D  F  V  F  *  F  C  *  F  D  I  *  F  F  F  E  S  V  F  I  D  C  C  S  E  F  Y  F  F  W  I  L  G  F  F  R  *  I  E  Y  L  G  I  T  G  N  L  K  L  L  E  G  F  *  E  N  G  T  V  F  V  F  A  G  V  *  L  L  V  *  A  V  V  D  W  R  F  R  S  R  E  E  *  F  V  A  Q  F  H  F  *  C  L  *  G  S  F  S  N  Y  W :   C  G  L  Q  G  K  T  C  H  P  R  G  E  E  V  E  A  C  Y  M  G  Y  S :   W  T  G  K  I  *  D  F  N  E  F  I  L  P  R  S  S  R  N  N  H  G :   L  *  C  N  K  A  R  H  I  Y  *  S  L  *  Y  M  G  Q  R  N  R  P  V  L  N  K  S  G  V  H  Q  D  A  C  R  Q  Q  S  *  *   : G  E  *  K  G  C  Q  Q  K  R  G  N  *  F  C  Q  G  I  W  M  S  F  H  R  M  Q  C  K  D  E  G  *  C  G  T  V  L  *  G  A  C  A  E   : D  F  G  H  S  K  S  L  G  *  R  F  S  W  R  Q  E  K  Y  I  *  T  E  T  S  G  I  *  C  I  N  K  W  L  L  L  R  W  T  F  L  C  F  L  H  A  F  P  F  F  C  K  T  K  *  C  N  Y  L  E  M  T  N  S  V  S  I  L  H  V  C  S  L  F  D  *  M  F  F  C  C  P  L  A  L  N  L  I  F  E  E  D  E  E  F  F  S  I  C  D  *  L  R  K  I  L  F  T  T  A   </first_frame>
            <second_frame>  S  S  F  F  S  S  S  I  S  F  F  N  F  V  D  L  I  Y  S  F  F  L  N  L  C  L  L  I  V  V  L  N  F  I  F  F  G  S  *  G  F  L  G  R  L  S  I  W  V  *  L  E  I  *  N  C  W  K  V  F  E  K  M  E  P  S  S  S  S  P  E  F  D  Y  L  F  K  L  L  L  I  G  D  S  G  V  G  K  S  S  L  L  L  S  F  T  S  D  A  F  E  D  L  S  P  T  I   : G  V  D  F  K  V  K  H  V  T  L  G  G  K  K  L  K  L  A  I  W  D  T   : A  G  Q  E  R  F  R  T  L  T  S  S  Y  Y  R  G  A  Q  G  I  I  M   : V  Y  D  V  T  R  R  D  T  F  T  N  L  S  D  I  W  A  K  E  I  D  L  Y  S  T  N  Q  E  C  I  K  M  L  V  G  N  K  V  D  K  :  E  S  E  R  V  V  S  K  K  E  G  I  D  F  A  R  E  Y  G  C  L  F  I  E  C  S  A  K  T  R  V  N  V  E  Q  C  F  E  E  L  V  L  K  :  I  L  D  T  P  S  L  L  A  E  G  S  A  G  V  R  K  N  I  F  R  Q  K  P  P  E  S  D  A  S  T  S  G  C  C  *  D  G  R  F  F  V  F  F  T  L  S  L  S  F  V  K  Q  N  D  V  I  T  W  R  *  R  T  L  F  L  S  F  T  F  V  V  C  L  T  E  C  S  S  V  V  L  L  L  L  I  *  Y  L  K  K  M  R  S  S  F  L  F  V  I  D  *  E  R  F  Y  L  P  Q  Q  </second_frame>
            <third_frame>   L  L  F  F  L  L  R  F  R  F  L  I  L  L  I  *  Y  I  V  F  F  *  I  C  V  Y  *  L  L  F  *  I  L  F  F  L  D  L  R  V  F  *  V  D  *  V  S  G  Y  N  W  K  F  E  I  V  G  R  F  L  R  K  W  N  R  L  R  L  R  R  S  L  I  T  C  L  S  C  C  *  L  E  I  Q  E  *  G  R  V  V  C  C  S  V  S  L  L  M  P  L  R  I  F  L  Q  L  L  :  V  W  T  S  R  *  N  M  S  P  S  G  G  R  S  *  S  L  L  Y  G  I  Q  :  L  D  R  K  D  L  G  L  *  R  V  H  T  T  E  E  L  K  E  *  S  W  :  F  M  M  *  Q  G  E  T  H  L  L  I  S  L  I  Y  G  P  K  K  S  T  C  T  Q  Q  I  R  S  A  S  R  C  L  *  A  T  K  L  I  R :   R  V  K  G  L  S  A  K  K  R  E  L  I  L  P  G  N  M  D  V  F  S  S  N  A  V  Q  R  R  G  L  M  W  N  S  A  L  R  S  L  C  *  R :   F  W  T  L  Q  V  S  W  L  K  V  Q  L  A  S  G  K  I  Y  L  D  R  N  L  R  N  L  M  H  Q  Q  V  A  V  V  E  M  D  V  S  L  F  S  S  R  F  P  F  L  L  *  N  K  M  M  *  L  L  G  D  D  E  L  C  F  Y  P  S  R  L  *  F  V  *  L  N  V  L  L  L  S  S  C  S  *  F  D  I  *  R  R  *  G  V  L  F  Y  L  *  L  I  K  K  D  F  I  Y  H  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12155" stop="12314"/>
                    <exon start="13099" stop="13167"/>
                    <exon start="14333" stop="14398"/>
                    <exon start="15326" stop="15447"/>
                    <exon start="15629" stop="15757"/>
                    <exon start="16410" stop="16517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCWKVFEKMEPSSSSPEFDYLFKLLLIGDSGVGKSSLLLSFTSDAFEDLSPTIGVDFKVKHVTLGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQECIKMLVGNKVDKESERVVSKKEGIDFAREYGCLFIECSAKTRVNVEQCFEELVLKILDTPSLLAEGSAGVRKNIFRQKPPESDASTSGCC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14729" e_stop="15140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="14729" e_stop="15140" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14729" stop="15140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGAGAAGTATACGTCCTTTCTTGCATTGTTAAAAGAATAGAAACTGGAAAGAGAAAACTAGAGCTGGTGCATATGAAAGTATACATCCTTTCTTGCACTGTTAGAAGAATAGAAATGTTAGTGGAAAGAGAACTAGTGCTGGTGCACAAGAAACCTCTTTAACGAATTGAAACGTTAGTGGAAAGAGAACTAGTGCTGGTGCATAGGTAACCTCTTTAACGATCTGATTGTGAGTTCCATTTAGAAATATGATTCTTCTTGCTTGTTAAAAGAATAGAAACATTAGTGGAAAGACAAAACTAGTGCTGGTTCATATGAAAGTATACGACCTTTCTTGCAGTTTTAATAGAATAGAAACGTTAGTGGAAAGAGCACTAGTGCTGGTGCATAGGAAAGCTCTTTAACAATCT</gDNA_template>
            <first_frame> *  E  K  Y  T  S  F  L  A  L  L  K  E  *  K  L  E  R  E  N  *  S  W  C  I  *  K  Y  T  S  F  L  A  L  L  E  E  *  K  C  *  W  K  E  N  *  C  W  C  T  R  N  L  F  N  E  L  K  R  *  W  K  E  N  *  C  W  C  I  G  N  L  F  N  D  L  I  V  S  S  I  *  K  Y  D  S  S  C  L  L  K  E  *  K  H  *  W  K  D  K  T  S  A  G  S  Y  E  S  I  R  P  F  L  Q  F  *  *  N  R  N  V  S  G  K  S  T  S  A  G  A  *  E  S  S  L  T  I  </first_frame>
            <second_frame>  R  R  S  I  R  P  F  L  H  C  *  K  N  R  N  W  K  E  K  T  R  A  G  A  Y  E  S  I  H  P  F  L  H  C  *  K  N  R  N  V  S  G  K  R  T  S  A  G  A  Q  E  T  S  L  T  N  *  N  V  S  G  K  R  T  S  A  G  A  *  V  T  S  L  T  I  *  L  *  V  P  F  R  N  M  I  L  L  A  C  *  K  N  R  N  I  S  G  K  T  K  L  V  L  V  H  M  K  V  Y  D  L  S  C  S  F  N  R  I  E  T  L  V  E  R  A  L  V  L  V  H  R  K  A  L  *  Q  S </second_frame>
            <third_frame>   G  E  V  Y  V  L  S  C  I  V  K  R  I  E  T  G  K  R  K  L  E  L  V  H  M  K  V  Y  I  L  S  C  T  V  R  R  I  E  M  L  V  E  R  E  L  V  L  V  H  K  K  P  L  *  R  I  E  T  L  V  E  R  E  L  V  L  V  H  R  *  P  L  *  R  S  D  C  E  F  H  L  E  I  *  F  F  L  L  V  K  R  I  E  T  L  V  E  R  Q  N  *  C  W  F  I  *  K  Y  T  T  F  L  A  V  L  I  E  *  K  R  *  W  K  E  H  *  C  W  C  I  G  K  L  F  N  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0213A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="38443" PGL_stop="18148"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38443" e_stop="38172"/>
            <exon e_start="35950" e_stop="35944"/>
            <exon e_start="34908" e_stop="34886"/>
            <exon e_start="34663" e_stop="34521"/>
            <exon e_start="33166" e_stop="33068"/>
            <exon e_start="32976" e_stop="32818"/>
            <exon e_start="27959" e_stop="27873"/>
            <exon e_start="26585" e_stop="26494"/>
            <exon e_start="24235" e_stop="24164"/>
            <exon e_start="18938" e_stop="18148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.978"/>
          <exon-intron don_prob="0.803" acc_prob="0.679" e_score="0.714"/>
          <exon-intron don_prob="0.128" acc_prob="0.586" e_score="0.522"/>
          <exon-intron don_prob="0.905" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.622" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.992" e_score="0.989"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="38443" e_stop="38172" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="35950" e_stop="35944" e_length="7"/>
          </exon>
          <intron i_serial="2" don_prob="0.803" acc_prob="0.679">
            <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035"/>
          </intron>
          <exon e_serial="3" e_score="0.522">
            <gDNA_exon_boundary e_start="34908" e_stop="34886" e_length="23"/>
          </exon>
          <intron i_serial="3" don_prob="0.128" acc_prob="0.586">
            <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34663" e_stop="34521" e_length="143"/>
          </exon>
          <intron i_serial="4" don_prob="0.905" acc_prob="0.983">
            <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33166" e_stop="33068" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.622">
            <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32976" e_stop="32818" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="27959" e_stop="27873" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.983" acc_prob="0.992">
            <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26585" e_stop="26494" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="26493" i_stop="24236" i_length="2258"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="24235" e_stop="24164" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.981" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24163" i_stop="18939" i_length="5225"/>
          </intron>
          <exon e_serial="10" e_score="0.985">
            <gDNA_exon_boundary e_start="18938" e_stop="18148" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38443" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38422" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38419" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38413" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38404" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38390" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38390" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38383" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38383" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38373" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38335" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38335" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34656" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32898" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26579" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26558" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26511" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18873" stop="18442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18833" stop="18442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18756" stop="18148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCGCACATATGAAAAAGTAAAAAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAG : TGTCACT : CTTAAGAGTTGGTCATTGGGCAG : CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG : GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG : TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG : CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG : GTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG : GAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAG : GAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCTATTTACATACATCTATTATTGTAGGTGTTCTCTATTTCACTTGGCCTACTTAGAATTCGTAATCCAGTATTTGTTAACGTTGTATTCTCCTAACTTTGTTACTCATGGGACTATAGTGATTATGTTTACTGGTACTTTCTTTGACTTCTGAGTTGTGATTCGATTTAATTTTTTTTCCAGAGACTCCATAGATAAATGTTGTACGTAGGCTGTATGTAAAGTCATTATTCGACTTATTAGGACACACTGTTACGTTTAGGTGCTATACAAATTATATTTCTTATACAATTAATA</gDNA_template>
            <first_frame> F  F  A  H  M  K  K  *  K  N  R  M  R  R  P  R  *  T  L  T  R  N  N  P  I  A  T  F  Q  N  F  L  H  R  P  W  R  N  L  H  R  S  R  R  R  N  R  H  S  N  H  R  E  S  L  L  L  R  R  R  P  *  R  R  L  N  S  R  R  L  *  R  R  *  N  S  R  R  L  *  R  R  *  N  S  R  R  L  *  R  S :   V  T  :  L  K  S  W  S  L  G  S :   F  L  T  G  N  K  N  A  K  F  S  Y  G  Y  A  T  F  K  G  K  R  A  S  M  E  D  Y  Y  E  T  S  I  S  E  V  D  G  Q  M  V  A  F  F  G  V  F  D   : G  H  G  G  S  R  T  A  E  Y  L  K  N  N  L  F  K  N  L  S  S  H  P  D  F  I  K  D  T  K  S  A  I   : V  E  A  F  K  Q  T  D  V  D  Y  L  N  E  E  K  G  Q  Q  K  D  A  G  S  T  A  S  T  A  V  L  L  G  D  R  L  L  V  A  N  V  G  D  S  R  V  V  A  C  R  D  G  S   : A  I  P  L  S  I  D  H  K  P  D  R  S  D  E  R  E  R  I  E  Q  A  G  G  F  I  I  W  A   : G  T  W  R  V  G  G  V  L  A  V  S  R  A  F  G  D  K  M  L  K  P  Y  V  V  A  D  P  E  I  Q  :  E  E  E  I  D  G  V  Q  F  L  I  V  A  S  D  G  L  W  N  V  L  S  N  E  :  E  A  V  T  I  V  Q  D  I  K  D  A  E  A  A  S  R  K  L  I  E  E  A  Y  S  R  G  S  S  D  N  I  T  C  V  V  V  R  F  E  S  T  *  M  D  L  L  R  S  A  Y  L  S  F  T  Y  K  H  K  E  K  P  K  R  R  E  T  F  S  S  L  F  C  N  R  L  E  H  *  K  *  C  L  S  S  M  L  L  S  L  Q  I  K  D  P  E  V  R  M  *  A  L  *  L  A  Y  F  S  N  S  S  I  L  L  L  I  I  K  L  F  G  W  S  C  Q  L  K  *  *  S  *  G  F  L  W  I  L  S  A  Y  R  L  V  M  L  P  S  I  V  M  *  *  *  *  S  V  N  H  T  G  I  V  S  S  S  L  F  T  Y  I  Y  Y  C  R  C  S  L  F  H  L  A  Y  L  E  F  V  I  Q  Y  L  L  T  L  Y  S  P  N  F  V  T  H  G  T  I  V  I  M  F  T  G  T  F  F  D  F  *  V  V  I  R  F  N  F  F  S  R  D  S  I  D  K  C  C  T  *  A  V  C  K  V  I  I  R  L  I  R  T  H  C  Y  V  *  V  L  Y  K  L  Y  F  L  Y  N  *   </first_frame>
            <second_frame>  F  S  H  I  *  K  S  K  K  T  E  C  G  D  R  D  E  R  *  Q  G  T  I  R  L  Q  P  S  R  T  F  S  T  V  H  G  E  T  C  T  G  A  G  A  G  T  V  T  A  T  T  E  R  V  Y  C  S  D  A  V  H  D  A  D  *  T  A  A  V  S  D  A  G  E  T  A  A  V  S  D  A  G  E  T  A  A  V  S  D  A   : V  S  L :   L  R  V  G  H  W  A   : A  F  *  L  E  T  K  M  L  N  S  A  M  D  M  L  L  L  R  G  N  G  P  P  W  R  T  T  M  R  Q  A  Y  Q  K  L  M  V  K  W  W  H  F  L  V  F  L  M  :  V  M  V  V  Q  E  Q  Q  N  T  *  R  T  T  S  L  R  I  *  V  V  I  L  I  L  S  K  I  Q  S  Q  L  *  :  L  K  H  L  S  R  L  M  S  I  T  L  M  K  K  K  A  S  K  K  M  P  V  Q  Q  R  Q  L  L  F  F  *  V  I  D  C  L  S  Q  M  W  G  T  L  E  S  W  L  A  E  M  V  Q  :  L  F  L  C  P  L  I  T  S  L  T  D  Q  M  S  A  K  G  *  N  R  P  V  V  S  L  S  G  Q  :  V  H  G  V  *  V  G  S  L  L  F  L  V  H  L  E  I  K  C  *  S  H  M  L  W  Q  T  Q  R  F  R :   K  K  K  L  M  V  Y  N  F  *  *  L  R  V  M  G  F  G  M  S  S  L  T  R :   R  P  *  P  L  C  R  T  *  K  M  L  R  Q  L  H  V  S  L  L  K  K  L  I  Q  G  G  V  Q  I  T  S  P  V  W  L  F  D  L  K  A  H  E  W  T  F  *  G  L  P  T  F  P  L  L  T  N  I  K  K  N  Q  K  D  A  K  L  S  P  R  C  F  A  T  D  L  S  I  K  N  D  V  C  R  Q  C  Y  S  V  C  R  *  K  I  L  K  *  G  C  R  P  C  N  *  L  I  F  P  T  L  P  F  F  C  *  S  L  N  Y  S  G  G  H  V  S  *  S  S  D  H  E  D  F  Y  G  Y  S  P  L  I  D  L  *  C  C  L  Q  L  L  C  D  D  D  E  V  *  I  T  L  A  *  F  L  L  L  Y  L  H  T  S  I  I  V  G  V  L  Y  F  T  W  P  T  *  N  S  *  S  S  I  C  *  R  C  I  L  L  T  L  L  L  M  G  L  *  *  L  C  L  L  V  L  S  L  T  S  E  L  *  F  D  L  I  F  F  P  E  T  P  *  I  N  V  V  R  R  L  Y  V  K  S  L  F  D  L  L  G  H  T  V  T  F  R  C  Y  T  N  Y  I  S  Y  T  I  N  </second_frame>
            <third_frame>   F  R  T  Y  E  K  V  K  K  P  N  A  A  T  A  M  N  V  D  K  E  Q  S  D  C  N  L  P  E  L  S  P  P  S  M  E  K  P  A  P  E  P  A  P  E  P  S  Q  Q  P  P  R  E  S  T  A  P  T  P  S  M  T  Q  I  K  Q  P  P  S  L  T  Q  V  K  Q  P  P  S  L  T  Q  V  K  Q  P  P  S  L  T  Q  :  C  H   : S  *  E  L  V  I  G  Q  :  L  S  D  W  K  Q  K  C  *  I  Q  L  W  I  C  Y  F  *  G  E  T  G  L  H  G  G  L  L  *  D  K  H  I  R  S  *  W  S  N  G  G  I  F  W  C  F  *  W :   S  W  W  F  K  N  S  R  I  L  K  E  Q  P  L  *  E  F  E  *  S  S  *  F  Y  Q  R  Y  K  V  S  Y  S :   *  S  I  *  A  D  *  C  R  L  P  *  *  R  K  R  P  A  K  R  C  R  F  N  S  V  N  C  C  S  F  R  *  *  I  A  C  R  K  C  G  G  L  *  S  R  G  L  Q  R  W  F  S :   Y  S  F  V  H  *  S  Q  A  *  Q  I  R  *  A  R  K  D  R  T  G  R  W  F  H  Y  L  G  R :   Y  M  A  C  R  W  G  P  C  C  F  S  C  I  W  R  *  N  A  K  A  I  C  C  G  R  P  R  D  S   : G  R  R  N  *  W  C  T  I  F  D  S  C  E  *  W  A  L  E  C  P  L  *  R   : G  G  R  D  H  C  A  G  H  K  R  C  *  G  S  F  T  *  A  Y  *  R  S  L  F  K  G  E  F  R  *  H  H  L  C  G  C  S  I  *  K  H  M  N  G  P  F  K  V  C  L  P  F  L  Y  L  Q  T  *  R  K  T  K  K  T  R  N  F  L  L  V  V  L  Q  Q  T  *  A  L  K  M  M  F  V  V  N  A  T  Q  S  A  D  K  R  S  *  S  E  D  V  G  L  V  T  S  L  F  F  Q  L  F  H  S  S  V  D  H  *  I  I  R  V  V  M  S  V  E  V  V  I  M  R  I  S  M  D  T  L  R  L  *  T  C  N  V  A  F  N  C  Y  V  M  M  M  K  C  K  S  H  W  H  S  F  F  F  S  I  Y  I  H  L  L  L  *  V  F  S  I  S  L  G  L  L  R  I  R  N  P  V  F  V  N  V  V  F  S  *  L  C  Y  S  W  D  Y  S  D  Y  V  Y  W  Y  F  L  *  L  L  S  C  D  S  I  *  F  F  F  Q  R  L  H  R  *  M  L  Y  V  G  C  M  *  S  H  Y  S  T  Y  *  D  T  L  L  R  L  G  A  I  Q  I  I  F  L  I  Q  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38176" stop="38172"/>
                    <exon start="35950" stop="35944"/>
                    <exon start="34908" stop="34886"/>
                    <exon start="34663" stop="34521"/>
                    <exon start="33166" stop="33068"/>
                    <exon start="32976" stop="32818"/>
                    <exon start="27959" stop="27873"/>
                    <exon start="26585" stop="26494"/>
                    <exon start="24235" stop="24164"/>
                    <exon start="18938" stop="18810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSVTLKSWSLGSFLTGNKNAKFSYGYATFKGKRASMEDYYETSISEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKSAIVEAFKQTDVDYLNEEKGQQKDAGSTASTAVLLGDRLLVANVGDSRVVACRDGSAIPLSIDHKPDRSDERERIEQAGGFIIWAGTWRVGGVLAVSRAFGDKMLKPYVVADPEIQEEEIDGVQFLIVASDGLWNVLSNEEAVTIVQDIKDAEAASRKLIEEAYSRGSSDNITCVVVRFEST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38441" stop="38172"/>
                    <exon start="35950" stop="35944"/>
                    <exon start="34908" stop="34904"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRTYEKVKKPNAATAMNVDKEQSDCNLPELSPPSMEKPAPEPAPEPSQQPPRESTAPTPSMTQIKQPPSLTQVKQPPSLTQVKQPPSLTQCHS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38443" e_stop="38172"/>
            <exon e_start="35950" e_stop="35944"/>
            <exon e_start="34908" e_stop="34886"/>
            <exon e_start="34663" e_stop="34521"/>
            <exon e_start="33166" e_stop="33068"/>
            <exon e_start="32976" e_stop="32818"/>
            <exon e_start="27959" e_stop="27873"/>
            <exon e_start="26585" e_stop="26494"/>
            <exon e_start="24235" e_stop="24164"/>
            <exon e_start="23892" e_stop="23865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.978"/>
          <exon-intron don_prob="0.803" acc_prob="0.679" e_score="0.714"/>
          <exon-intron don_prob="0.128" acc_prob="0.586" e_score="0.522"/>
          <exon-intron don_prob="0.905" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.622" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.992" e_score="0.989"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.388" e_score="1.000"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="38443" e_stop="38172" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38171" i_stop="35951" i_length="2221"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="35950" e_stop="35944" e_length="7"/>
          </exon>
          <intron i_serial="2" don_prob="0.803" acc_prob="0.679">
            <gDNA_intron_boundary i_start="35943" i_stop="34909" i_length="1035"/>
          </intron>
          <exon e_serial="3" e_score="0.522">
            <gDNA_exon_boundary e_start="34908" e_stop="34886" e_length="23"/>
          </exon>
          <intron i_serial="3" don_prob="0.128" acc_prob="0.586">
            <gDNA_intron_boundary i_start="34885" i_stop="34664" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34663" e_stop="34521" e_length="143"/>
          </exon>
          <intron i_serial="4" don_prob="0.905" acc_prob="0.983">
            <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33166" e_stop="33068" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.622">
            <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32976" e_stop="32818" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="27959" e_stop="27873" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.983" acc_prob="0.992">
            <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26585" e_stop="26494" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="26493" i_stop="24236" i_length="2258"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="24235" e_stop="24164" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.981" acc_prob="0.388">
            <gDNA_intron_boundary i_start="24163" i_stop="23893" i_length="271"/>
          </intron>
          <exon e_serial="10" e_score="0.571">
            <gDNA_exon_boundary e_start="23892" e_stop="23865" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38443" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38422" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38419" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38413" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38404" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38390" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38390" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38383" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38383" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38373" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38335" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38335" stop="38172"/>
              <exon start="35950" stop="35944"/>
              <exon start="34908" stop="34886"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34656" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="23892" stop="23865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32898" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCGCACATATGAAAAAGTAAAAAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAG : TGTCACT : CTTAAGAGTTGGTCATTGGGCAG : CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG : GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG : TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG : CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG : GTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG : GAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAG : GAGGAAGGCCAATGATGCAGGACTCGAG</gDNA_template>
            <first_frame> F  F  A  H  M  K  K  *  K  N  R  M  R  R  P  R  *  T  L  T  R  N  N  P  I  A  T  F  Q  N  F  L  H  R  P  W  R  N  L  H  R  S  R  R  R  N  R  H  S  N  H  R  E  S  L  L  L  R  R  R  P  *  R  R  L  N  S  R  R  L  *  R  R  *  N  S  R  R  L  *  R  R  *  N  S  R  R  L  *  R  S :   V  T  :  L  K  S  W  S  L  G  S :   F  L  T  G  N  K  N  A  K  F  S  Y  G  Y  A  T  F  K  G  K  R  A  S  M  E  D  Y  Y  E  T  S  I  S  E  V  D  G  Q  M  V  A  F  F  G  V  F  D   : G  H  G  G  S  R  T  A  E  Y  L  K  N  N  L  F  K  N  L  S  S  H  P  D  F  I  K  D  T  K  S  A  I   : V  E  A  F  K  Q  T  D  V  D  Y  L  N  E  E  K  G  Q  Q  K  D  A  G  S  T  A  S  T  A  V  L  L  G  D  R  L  L  V  A  N  V  G  D  S  R  V  V  A  C  R  D  G  S   : A  I  P  L  S  I  D  H  K  P  D  R  S  D  E  R  E  R  I  E  Q  A  G  G  F  I  I  W  A   : G  T  W  R  V  G  G  V  L  A  V  S  R  A  F  G  D  K  M  L  K  P  Y  V  V  A  D  P  E  I  Q  :  E  E  E  I  D  G  V  Q  F  L  I  V  A  S  D  G  L  W  N  V  L  S  N  E  :  E  E  G  Q  *  C  R  T  R  </first_frame>
            <second_frame>  F  S  H  I  *  K  S  K  K  T  E  C  G  D  R  D  E  R  *  Q  G  T  I  R  L  Q  P  S  R  T  F  S  T  V  H  G  E  T  C  T  G  A  G  A  G  T  V  T  A  T  T  E  R  V  Y  C  S  D  A  V  H  D  A  D  *  T  A  A  V  S  D  A  G  E  T  A  A  V  S  D  A  G  E  T  A  A  V  S  D  A   : V  S  L :   L  R  V  G  H  W  A   : A  F  *  L  E  T  K  M  L  N  S  A  M  D  M  L  L  L  R  G  N  G  P  P  W  R  T  T  M  R  Q  A  Y  Q  K  L  M  V  K  W  W  H  F  L  V  F  L  M  :  V  M  V  V  Q  E  Q  Q  N  T  *  R  T  T  S  L  R  I  *  V  V  I  L  I  L  S  K  I  Q  S  Q  L  *  :  L  K  H  L  S  R  L  M  S  I  T  L  M  K  K  K  A  S  K  K  M  P  V  Q  Q  R  Q  L  L  F  F  *  V  I  D  C  L  S  Q  M  W  G  T  L  E  S  W  L  A  E  M  V  Q  :  L  F  L  C  P  L  I  T  S  L  T  D  Q  M  S  A  K  G  *  N  R  P  V  V  S  L  S  G  Q  :  V  H  G  V  *  V  G  S  L  L  F  L  V  H  L  E  I  K  C  *  S  H  M  L  W  Q  T  Q  R  F  R :   K  K  K  L  M  V  Y  N  F  *  *  L  R  V  M  G  F  G  M  S  S  L  T  R :   R  K  A  N  D  A  G  L  E </second_frame>
            <third_frame>   F  R  T  Y  E  K  V  K  K  P  N  A  A  T  A  M  N  V  D  K  E  Q  S  D  C  N  L  P  E  L  S  P  P  S  M  E  K  P  A  P  E  P  A  P  E  P  S  Q  Q  P  P  R  E  S  T  A  P  T  P  S  M  T  Q  I  K  Q  P  P  S  L  T  Q  V  K  Q  P  P  S  L  T  Q  V  K  Q  P  P  S  L  T  Q  :  C  H   : S  *  E  L  V  I  G  Q  :  L  S  D  W  K  Q  K  C  *  I  Q  L  W  I  C  Y  F  *  G  E  T  G  L  H  G  G  L  L  *  D  K  H  I  R  S  *  W  S  N  G  G  I  F  W  C  F  *  W :   S  W  W  F  K  N  S  R  I  L  K  E  Q  P  L  *  E  F  E  *  S  S  *  F  Y  Q  R  Y  K  V  S  Y  S :   *  S  I  *  A  D  *  C  R  L  P  *  *  R  K  R  P  A  K  R  C  R  F  N  S  V  N  C  C  S  F  R  *  *  I  A  C  R  K  C  G  G  L  *  S  R  G  L  Q  R  W  F  S :   Y  S  F  V  H  *  S  Q  A  *  Q  I  R  *  A  R  K  D  R  T  G  R  W  F  H  Y  L  G  R :   Y  M  A  C  R  W  G  P  C  C  F  S  C  I  W  R  *  N  A  K  A  I  C  C  G  R  P  R  D  S   : G  R  R  N  *  W  C  T  I  F  D  S  C  E  *  W  A  L  E  C  P  L  *  R   : G  G  R  P  M  M  Q  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38176" stop="38172"/>
                    <exon start="35950" stop="35944"/>
                    <exon start="34908" stop="34886"/>
                    <exon start="34663" stop="34521"/>
                    <exon start="33166" stop="33068"/>
                    <exon start="32976" stop="32818"/>
                    <exon start="27959" stop="27873"/>
                    <exon start="26585" stop="26494"/>
                    <exon start="24235" stop="24164"/>
                    <exon start="23892" stop="23878"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSVTLKSWSLGSFLTGNKNAKFSYGYATFKGKRASMEDYYETSISEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKSAIVEAFKQTDVDYLNEEKGQQKDAGSTASTAVLLGDRLLVANVGDSRVVACRDGSAIPLSIDHKPDRSDERERIEQAGGFIIWAGTWRVGGVLAVSRAFGDKMLKPYVVADPEIQEEEIDGVQFLIVASDGLWNVLSNEEEGQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38441" stop="38172"/>
                    <exon start="35950" stop="35944"/>
                    <exon start="34908" stop="34904"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRTYEKVKKPNAATAMNVDKEQSDCNLPELSPPSMEKPAPEPAPEPSQQPPRESTAPTPSMTQIKQPPSLTQVKQPPSLTQVKQPPSLTQCHS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38429" e_stop="38116"/>
            <exon e_start="34663" e_stop="34521"/>
            <exon e_start="33166" e_stop="33068"/>
            <exon e_start="32976" e_stop="32818"/>
            <exon e_start="27959" e_stop="27873"/>
            <exon e_start="26585" e_stop="26494"/>
            <exon e_start="24235" e_stop="24164"/>
            <exon e_start="18938" e_stop="18148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.586" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.622" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38429" e_stop="38116" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.586">
            <gDNA_intron_boundary i_start="38115" i_stop="34664" i_length="3452"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34663" e_stop="34521" e_length="143"/>
          </exon>
          <intron i_serial="2" don_prob="0.905" acc_prob="0.983">
            <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33166" e_stop="33068" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.622">
            <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32976" e_stop="32818" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27959" e_stop="27873" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.992">
            <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26585" e_stop="26494" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="26493" i_stop="24236" i_length="2258"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24235" e_stop="24164" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.981" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24163" i_stop="18939" i_length="5225"/>
          </intron>
          <exon e_serial="8" e_score="0.985">
            <gDNA_exon_boundary e_start="18938" e_stop="18148" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38429" stop="38116"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38418" stop="38116"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38401" stop="38116"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34656" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32898" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26579" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26558" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26511" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18873" stop="18442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18833" stop="18442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18756" stop="18148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAAGTAAAAAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAG : CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG : GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG : TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG : CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG : GTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG : GAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAG : GAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCTATTTACATACATCTATTATTGTAGGTGTTCTCTATTTCACTTGGCCTACTTAGAATTCGTAATCCAGTATTTGTTAACGTTGTATTCTCCTAACTTTGTTACTCATGGGACTATAGTGATTATGTTTACTGGTACTTTCTTTGACTTCTGAGTTGTGATTCGATTTAATTTTTTTTCCAGAGACTCCATAGATAAATGTTGTACGTAGGCTGTATGTAAAGTCATTATTCGACTTATTAGGACACACTGTTACGTTTAGGTGCTATACAAATTATATTTCTTATACAATTAATA</gDNA_template>
            <first_frame> E  K  V  K  K  P  N  A  A  T  A  M  N  V  D  K  E  Q  S  D  C  N  L  P  E  L  S  P  P  S  M  E  K  P  A  P  E  P  A  P  E  P  S  Q  Q  P  P  R  E  S  T  A  P  T  P  S  M  T  Q  I  K  Q  P  P  S  L  T  Q  V  K  Q  P  P  S  L  T  Q  V  K  Q  P  P  S  L  T  Q  V  K  Q  P  P  S  I  D  P  S  A  L  F  S  G  G  G  I  S :   F  L  T  G  N  K  N  A  K  F  S  Y  G  Y  A  T  F  K  G  K  R  A  S  M  E  D  Y  Y  E  T  S  I  S  E  V  D  G  Q  M  V  A  F  F  G  V  F  D   : G  H  G  G  S  R  T  A  E  Y  L  K  N  N  L  F  K  N  L  S  S  H  P  D  F  I  K  D  T  K  S  A  I   : V  E  A  F  K  Q  T  D  V  D  Y  L  N  E  E  K  G  Q  Q  K  D  A  G  S  T  A  S  T  A  V  L  L  G  D  R  L  L  V  A  N  V  G  D  S  R  V  V  A  C  R  D  G  S   : A  I  P  L  S  I  D  H  K  P  D  R  S  D  E  R  E  R  I  E  Q  A  G  G  F  I  I  W  A   : G  T  W  R  V  G  G  V  L  A  V  S  R  A  F  G  D  K  M  L  K  P  Y  V  V  A  D  P  E  I  Q  :  E  E  E  I  D  G  V  Q  F  L  I  V  A  S  D  G  L  W  N  V  L  S  N  E  :  E  A  V  T  I  V  Q  D  I  K  D  A  E  A  A  S  R  K  L  I  E  E  A  Y  S  R  G  S  S  D  N  I  T  C  V  V  V  R  F  E  S  T  *  M  D  L  L  R  S  A  Y  L  S  F  T  Y  K  H  K  E  K  P  K  R  R  E  T  F  S  S  L  F  C  N  R  L  E  H  *  K  *  C  L  S  S  M  L  L  S  L  Q  I  K  D  P  E  V  R  M  *  A  L  *  L  A  Y  F  S  N  S  S  I  L  L  L  I  I  K  L  F  G  W  S  C  Q  L  K  *  *  S  *  G  F  L  W  I  L  S  A  Y  R  L  V  M  L  P  S  I  V  M  *  *  *  *  S  V  N  H  T  G  I  V  S  S  S  L  F  T  Y  I  Y  Y  C  R  C  S  L  F  H  L  A  Y  L  E  F  V  I  Q  Y  L  L  T  L  Y  S  P  N  F  V  T  H  G  T  I  V  I  M  F  T  G  T  F  F  D  F  *  V  V  I  R  F  N  F  F  S  R  D  S  I  D  K  C  C  T  *  A  V  C  K  V  I  I  R  L  I  R  T  H  C  Y  V  *  V  L  Y  K  L  Y  F  L  Y  N  *   </first_frame>
            <second_frame>  K  K  *  K  N  R  M  R  R  P  R  *  T  L  T  R  N  N  P  I  A  T  F  Q  N  F  L  H  R  P  W  R  N  L  H  R  S  R  R  R  N  R  H  S  N  H  R  E  S  L  L  L  R  R  R  P  *  R  R  L  N  S  R  R  L  *  R  R  *  N  S  R  R  L  *  R  R  *  N  S  R  R  L  *  R  R  *  N  S  R  R  L  L  I  P  V  R  S  L  A  A  A  V  L   : A  F  *  L  E  T  K  M  L  N  S  A  M  D  M  L  L  L  R  G  N  G  P  P  W  R  T  T  M  R  Q  A  Y  Q  K  L  M  V  K  W  W  H  F  L  V  F  L  M  :  V  M  V  V  Q  E  Q  Q  N  T  *  R  T  T  S  L  R  I  *  V  V  I  L  I  L  S  K  I  Q  S  Q  L  *  :  L  K  H  L  S  R  L  M  S  I  T  L  M  K  K  K  A  S  K  K  M  P  V  Q  Q  R  Q  L  L  F  F  *  V  I  D  C  L  S  Q  M  W  G  T  L  E  S  W  L  A  E  M  V  Q  :  L  F  L  C  P  L  I  T  S  L  T  D  Q  M  S  A  K  G  *  N  R  P  V  V  S  L  S  G  Q  :  V  H  G  V  *  V  G  S  L  L  F  L  V  H  L  E  I  K  C  *  S  H  M  L  W  Q  T  Q  R  F  R :   K  K  K  L  M  V  Y  N  F  *  *  L  R  V  M  G  F  G  M  S  S  L  T  R :   R  P  *  P  L  C  R  T  *  K  M  L  R  Q  L  H  V  S  L  L  K  K  L  I  Q  G  G  V  Q  I  T  S  P  V  W  L  F  D  L  K  A  H  E  W  T  F  *  G  L  P  T  F  P  L  L  T  N  I  K  K  N  Q  K  D  A  K  L  S  P  R  C  F  A  T  D  L  S  I  K  N  D  V  C  R  Q  C  Y  S  V  C  R  *  K  I  L  K  *  G  C  R  P  C  N  *  L  I  F  P  T  L  P  F  F  C  *  S  L  N  Y  S  G  G  H  V  S  *  S  S  D  H  E  D  F  Y  G  Y  S  P  L  I  D  L  *  C  C  L  Q  L  L  C  D  D  D  E  V  *  I  T  L  A  *  F  L  L  L  Y  L  H  T  S  I  I  V  G  V  L  Y  F  T  W  P  T  *  N  S  *  S  S  I  C  *  R  C  I  L  L  T  L  L  L  M  G  L  *  *  L  C  L  L  V  L  S  L  T  S  E  L  *  F  D  L  I  F  F  P  E  T  P  *  I  N  V  V  R  R  L  Y  V  K  S  L  F  D  L  L  G  H  T  V  T  F  R  C  Y  T  N  Y  I  S  Y  T  I  N  </second_frame>
            <third_frame>   K  S  K  K  T  E  C  G  D  R  D  E  R  *  Q  G  T  I  R  L  Q  P  S  R  T  F  S  T  V  H  G  E  T  C  T  G  A  G  A  G  T  V  T  A  T  T  E  R  V  Y  C  S  D  A  V  H  D  A  D  *  T  A  A  V  S  D  A  G  E  T  A  A  V  S  D  A  G  E  T  A  A  V  S  D  A  G  E  T  A  A  V  Y  *  S  Q  C  A  L  *  R  R  R  Y  *  :  L  S  D  W  K  Q  K  C  *  I  Q  L  W  I  C  Y  F  *  G  E  T  G  L  H  G  G  L  L  *  D  K  H  I  R  S  *  W  S  N  G  G  I  F  W  C  F  *  W :   S  W  W  F  K  N  S  R  I  L  K  E  Q  P  L  *  E  F  E  *  S  S  *  F  Y  Q  R  Y  K  V  S  Y  S :   *  S  I  *  A  D  *  C  R  L  P  *  *  R  K  R  P  A  K  R  C  R  F  N  S  V  N  C  C  S  F  R  *  *  I  A  C  R  K  C  G  G  L  *  S  R  G  L  Q  R  W  F  S :   Y  S  F  V  H  *  S  Q  A  *  Q  I  R  *  A  R  K  D  R  T  G  R  W  F  H  Y  L  G  R :   Y  M  A  C  R  W  G  P  C  C  F  S  C  I  W  R  *  N  A  K  A  I  C  C  G  R  P  R  D  S   : G  R  R  N  *  W  C  T  I  F  D  S  C  E  *  W  A  L  E  C  P  L  *  R   : G  G  R  D  H  C  A  G  H  K  R  C  *  G  S  F  T  *  A  Y  *  R  S  L  F  K  G  E  F  R  *  H  H  L  C  G  C  S  I  *  K  H  M  N  G  P  F  K  V  C  L  P  F  L  Y  L  Q  T  *  R  K  T  K  K  T  R  N  F  L  L  V  V  L  Q  Q  T  *  A  L  K  M  M  F  V  V  N  A  T  Q  S  A  D  K  R  S  *  S  E  D  V  G  L  V  T  S  L  F  F  Q  L  F  H  S  S  V  D  H  *  I  I  R  V  V  M  S  V  E  V  V  I  M  R  I  S  M  D  T  L  R  L  *  T  C  N  V  A  F  N  C  Y  V  M  M  M  K  C  K  S  H  W  H  S  F  F  F  S  I  Y  I  H  L  L  L  *  V  F  S  I  S  L  G  L  L  R  I  R  N  P  V  F  V  N  V  V  F  S  *  L  C  Y  S  W  D  Y  S  D  Y  V  Y  W  Y  F  L  *  L  L  S  C  D  S  I  *  F  F  F  Q  R  L  H  R  *  M  L  Y  V  G  C  M  *  S  H  Y  S  T  Y  *  D  T  L  L  R  L  G  A  I  Q  I  I  F  L  I  Q  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38429" stop="38116"/>
                    <exon start="34663" stop="34521"/>
                    <exon start="33166" stop="33068"/>
                    <exon start="32976" stop="32818"/>
                    <exon start="27959" stop="27873"/>
                    <exon start="26585" stop="26494"/>
                    <exon start="24235" stop="24164"/>
                    <exon start="18938" stop="18810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKVKKPNAATAMNVDKEQSDCNLPELSPPSMEKPAPEPAPEPSQQPPRESTAPTPSMTQIKQPPSLTQVKQPPSLTQVKQPPSLTQVKQPPSIDPSALFSGGGISFLTGNKNAKFSYGYATFKGKRASMEDYYETSISEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKSAIVEAFKQTDVDYLNEEKGQQKDAGSTASTAVLLGDRLLVANVGDSRVVACRDGSAIPLSIDHKPDRSDERERIEQAGGFIIWAGTWRVGGVLAVSRAFGDKMLKPYVVADPEIQEEEIDGVQFLIVASDGLWNVLSNEEAVTIVQDIKDAEAASRKLIEEAYSRGSSDNITCVVVRFEST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="38408" e_stop="38172"/>
            <exon e_start="36751" e_stop="36724"/>
            <exon e_start="34663" e_stop="34521"/>
            <exon e_start="33166" e_stop="33068"/>
            <exon e_start="32976" e_stop="32818"/>
            <exon e_start="27959" e_stop="27873"/>
            <exon e_start="26585" e_stop="26494"/>
            <exon e_start="24235" e_stop="24164"/>
            <exon e_start="18938" e_stop="18148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.178" e_score="0.970"/>
          <exon-intron don_prob="0.000" acc_prob="0.586" e_score="0.571"/>
          <exon-intron don_prob="0.905" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.622" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="0.994"/>
          <exon-intron don_prob="0.983" acc_prob="0.992" e_score="0.989"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="38408" e_stop="38172" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.178">
            <gDNA_intron_boundary i_start="38171" i_stop="36752" i_length="1420"/>
          </intron>
          <exon e_serial="2" e_score="0.571">
            <gDNA_exon_boundary e_start="36751" e_stop="36724" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.586">
            <gDNA_intron_boundary i_start="36723" i_stop="34664" i_length="2060"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34663" e_stop="34521" e_length="143"/>
          </exon>
          <intron i_serial="3" don_prob="0.905" acc_prob="0.983">
            <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33166" e_stop="33068" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.622">
            <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="32976" e_stop="32818" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="27959" e_stop="27873" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.992">
            <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26585" e_stop="26494" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="26493" i_stop="24236" i_length="2258"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24235" e_stop="24164" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.981" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24163" i_stop="18939" i_length="5225"/>
          </intron>
          <exon e_serial="9" e_score="0.985">
            <gDNA_exon_boundary e_start="18938" e_stop="18148" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38408" stop="38172"/>
              <exon start="36751" stop="36724"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34656" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32898" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26579" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26558" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26511" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18873" stop="18442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18833" stop="18442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18756" stop="18148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAG : TGTCAGTTCTTCATAAGAGGCTCATTGG : CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG : GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG : TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG : CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG : GTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG : GAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAG : GAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCTATTTACATACATCTATTATTGTAGGTGTTCTCTATTTCACTTGGCCTACTTAGAATTCGTAATCCAGTATTTGTTAACGTTGTATTCTCCTAACTTTGTTACTCATGGGACTATAGTGATTATGTTTACTGGTACTTTCTTTGACTTCTGAGTTGTGATTCGATTTAATTTTTTTTCCAGAGACTCCATAGATAAATGTTGTACGTAGGCTGTATGTAAAGTCATTATTCGACTTATTAGGACACACTGTTACGTTTAGGTGCTATACAAATTATATTTCTTATACAATTAATA</gDNA_template>
            <first_frame> A  A  T  A  M  N  V  D  K  E  Q  S  D  C  N  L  P  E  L  S  P  P  S  M  E  K  P  A  P  E  P  A  P  E  P  S  Q  Q  P  P  R  E  S  T  A  P  T  P  S  M  T  Q  I  K  Q  P  P  S  L  T  Q  V  K  Q  P  P  S  L  T  Q  V  K  Q  P  P  S  L  T  Q  :  C  Q  F  F  I  R  G  S  L   : A  F  *  L  E  T  K  M  L  N  S  A  M  D  M  L  L  L  R  G  N  G  P  P  W  R  T  T  M  R  Q  A  Y  Q  K  L  M  V  K  W  W  H  F  L  V  F  L  M  :  V  M  V  V  Q  E  Q  Q  N  T  *  R  T  T  S  L  R  I  *  V  V  I  L  I  L  S  K  I  Q  S  Q  L  *  :  L  K  H  L  S  R  L  M  S  I  T  L  M  K  K  K  A  S  K  K  M  P  V  Q  Q  R  Q  L  L  F  F  *  V  I  D  C  L  S  Q  M  W  G  T  L  E  S  W  L  A  E  M  V  Q  :  L  F  L  C  P  L  I  T  S  L  T  D  Q  M  S  A  K  G  *  N  R  P  V  V  S  L  S  G  Q  :  V  H  G  V  *  V  G  S  L  L  F  L  V  H  L  E  I  K  C  *  S  H  M  L  W  Q  T  Q  R  F  R :   K  K  K  L  M  V  Y  N  F  *  *  L  R  V  M  G  F  G  M  S  S  L  T  R :   R  P  *  P  L  C  R  T  *  K  M  L  R  Q  L  H  V  S  L  L  K  K  L  I  Q  G  G  V  Q  I  T  S  P  V  W  L  F  D  L  K  A  H  E  W  T  F  *  G  L  P  T  F  P  L  L  T  N  I  K  K  N  Q  K  D  A  K  L  S  P  R  C  F  A  T  D  L  S  I  K  N  D  V  C  R  Q  C  Y  S  V  C  R  *  K  I  L  K  *  G  C  R  P  C  N  *  L  I  F  P  T  L  P  F  F  C  *  S  L  N  Y  S  G  G  H  V  S  *  S  S  D  H  E  D  F  Y  G  Y  S  P  L  I  D  L  *  C  C  L  Q  L  L  C  D  D  D  E  V  *  I  T  L  A  *  F  L  L  L  Y  L  H  T  S  I  I  V  G  V  L  Y  F  T  W  P  T  *  N  S  *  S  S  I  C  *  R  C  I  L  L  T  L  L  L  M  G  L  *  *  L  C  L  L  V  L  S  L  T  S  E  L  *  F  D  L  I  F  F  P  E  T  P  *  I  N  V  V  R  R  L  Y  V  K  S  L  F  D  L  L  G  H  T  V  T  F  R  C  Y  T  N  Y  I  S  Y  T  I  N  </first_frame>
            <second_frame>  R  R  P  R  *  T  L  T  R  N  N  P  I  A  T  F  Q  N  F  L  H  R  P  W  R  N  L  H  R  S  R  R  R  N  R  H  S  N  H  R  E  S  L  L  L  R  R  R  P  *  R  R  L  N  S  R  R  L  *  R  R  *  N  S  R  R  L  *  R  R  *  N  S  R  R  L  *  R  S :   V  S  S  S  *  E  A  H  W  :  L  S  D  W  K  Q  K  C  *  I  Q  L  W  I  C  Y  F  *  G  E  T  G  L  H  G  G  L  L  *  D  K  H  I  R  S  *  W  S  N  G  G  I  F  W  C  F  *  W :   S  W  W  F  K  N  S  R  I  L  K  E  Q  P  L  *  E  F  E  *  S  S  *  F  Y  Q  R  Y  K  V  S  Y  S :   *  S  I  *  A  D  *  C  R  L  P  *  *  R  K  R  P  A  K  R  C  R  F  N  S  V  N  C  C  S  F  R  *  *  I  A  C  R  K  C  G  G  L  *  S  R  G  L  Q  R  W  F  S :   Y  S  F  V  H  *  S  Q  A  *  Q  I  R  *  A  R  K  D  R  T  G  R  W  F  H  Y  L  G  R :   Y  M  A  C  R  W  G  P  C  C  F  S  C  I  W  R  *  N  A  K  A  I  C  C  G  R  P  R  D  S   : G  R  R  N  *  W  C  T  I  F  D  S  C  E  *  W  A  L  E  C  P  L  *  R   : G  G  R  D  H  C  A  G  H  K  R  C  *  G  S  F  T  *  A  Y  *  R  S  L  F  K  G  E  F  R  *  H  H  L  C  G  C  S  I  *  K  H  M  N  G  P  F  K  V  C  L  P  F  L  Y  L  Q  T  *  R  K  T  K  K  T  R  N  F  L  L  V  V  L  Q  Q  T  *  A  L  K  M  M  F  V  V  N  A  T  Q  S  A  D  K  R  S  *  S  E  D  V  G  L  V  T  S  L  F  F  Q  L  F  H  S  S  V  D  H  *  I  I  R  V  V  M  S  V  E  V  V  I  M  R  I  S  M  D  T  L  R  L  *  T  C  N  V  A  F  N  C  Y  V  M  M  M  K  C  K  S  H  W  H  S  F  F  F  S  I  Y  I  H  L  L  L  *  V  F  S  I  S  L  G  L  L  R  I  R  N  P  V  F  V  N  V  V  F  S  *  L  C  Y  S  W  D  Y  S  D  Y  V  Y  W  Y  F  L  *  L  L  S  C  D  S  I  *  F  F  F  Q  R  L  H  R  *  M  L  Y  V  G  C  M  *  S  H  Y  S  T  Y  *  D  T  L  L  R  L  G  A  I  Q  I  I  F  L  I  Q  L  I </second_frame>
            <third_frame>   G  D  R  D  E  R  *  Q  G  T  I  R  L  Q  P  S  R  T  F  S  T  V  H  G  E  T  C  T  G  A  G  A  G  T  V  T  A  T  T  E  R  V  Y  C  S  D  A  V  H  D  A  D  *  T  A  A  V  S  D  A  G  E  T  A  A  V  S  D  A  G  E  T  A  A  V  S  D  A   : V  S  V  L  H  K  R  L  I  G :   F  L  T  G  N  K  N  A  K  F  S  Y  G  Y  A  T  F  K  G  K  R  A  S  M  E  D  Y  Y  E  T  S  I  S  E  V  D  G  Q  M  V  A  F  F  G  V  F  D   : G  H  G  G  S  R  T  A  E  Y  L  K  N  N  L  F  K  N  L  S  S  H  P  D  F  I  K  D  T  K  S  A  I   : V  E  A  F  K  Q  T  D  V  D  Y  L  N  E  E  K  G  Q  Q  K  D  A  G  S  T  A  S  T  A  V  L  L  G  D  R  L  L  V  A  N  V  G  D  S  R  V  V  A  C  R  D  G  S   : A  I  P  L  S  I  D  H  K  P  D  R  S  D  E  R  E  R  I  E  Q  A  G  G  F  I  I  W  A   : G  T  W  R  V  G  G  V  L  A  V  S  R  A  F  G  D  K  M  L  K  P  Y  V  V  A  D  P  E  I  Q  :  E  E  E  I  D  G  V  Q  F  L  I  V  A  S  D  G  L  W  N  V  L  S  N  E  :  E  A  V  T  I  V  Q  D  I  K  D  A  E  A  A  S  R  K  L  I  E  E  A  Y  S  R  G  S  S  D  N  I  T  C  V  V  V  R  F  E  S  T  *  M  D  L  L  R  S  A  Y  L  S  F  T  Y  K  H  K  E  K  P  K  R  R  E  T  F  S  S  L  F  C  N  R  L  E  H  *  K  *  C  L  S  S  M  L  L  S  L  Q  I  K  D  P  E  V  R  M  *  A  L  *  L  A  Y  F  S  N  S  S  I  L  L  L  I  I  K  L  F  G  W  S  C  Q  L  K  *  *  S  *  G  F  L  W  I  L  S  A  Y  R  L  V  M  L  P  S  I  V  M  *  *  *  *  S  V  N  H  T  G  I  V  S  S  S  L  F  T  Y  I  Y  Y  C  R  C  S  L  F  H  L  A  Y  L  E  F  V  I  Q  Y  L  L  T  L  Y  S  P  N  F  V  T  H  G  T  I  V  I  M  F  T  G  T  F  F  D  F  *  V  V  I  R  F  N  F  F  S  R  D  S  I  D  K  C  C  T  *  A  V  C  K  V  I  I  R  L  I  R  T  H  C  Y  V  *  V  L  Y  K  L  Y  F  L  Y  N  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38247" stop="38172"/>
                    <exon start="36751" stop="36724"/>
                    <exon start="34663" stop="34521"/>
                    <exon start="33166" stop="33068"/>
                    <exon start="32976" stop="32818"/>
                    <exon start="27959" stop="27873"/>
                    <exon start="26585" stop="26494"/>
                    <exon start="24235" stop="24164"/>
                    <exon start="18938" stop="18810"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAAVSDAGETAAVSDAGETAAVSDAVSVLHKRLIGFLTGNKNAKFSYGYATFKGKRASMEDYYETSISEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKSAIVEAFKQTDVDYLNEEKGQQKDAGSTASTAVLLGDRLLVANVGDSRVVACRDGSAIPLSIDHKPDRSDERERIEQAGGFIIWAGTWRVGGVLAVSRAFGDKMLKPYVVADPEIQEEEIDGVQFLIVASDGLWNVLSNEEAVTIVQDIKDAEAASRKLIEEAYSRGSSDNITCVVVRFEST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="38429" e_stop="38116"/>
            <exon e_start="34663" e_stop="34521"/>
            <exon e_start="33166" e_stop="33068"/>
            <exon e_start="32976" e_stop="32818"/>
            <exon e_start="27959" e_stop="27873"/>
            <exon e_start="26585" e_stop="26494"/>
            <exon e_start="18917" e_stop="18148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.586" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.622" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.743" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38429" e_stop="38116" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.586">
            <gDNA_intron_boundary i_start="38115" i_stop="34664" i_length="3452"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34663" e_stop="34521" e_length="143"/>
          </exon>
          <intron i_serial="2" don_prob="0.905" acc_prob="0.983">
            <gDNA_intron_boundary i_start="34520" i_stop="33167" i_length="1354"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33166" e_stop="33068" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.622">
            <gDNA_intron_boundary i_start="33067" i_stop="32977" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32976" e_stop="32818" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32817" i_stop="27960" i_length="4858"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27959" e_stop="27873" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.992">
            <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26585" e_stop="26494" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.743">
            <gDNA_intron_boundary i_start="26493" i_stop="18918" i_length="7576"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="18917" e_stop="18148" e_length="770"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38429" stop="38116"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38418" stop="38116"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38401" stop="38116"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38237" stop="38116"/>
              <exon start="34663" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26494"/>
              <exon start="18917" stop="18749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34656" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34654" stop="34521"/>
              <exon start="33166" stop="33068"/>
              <exon start="32976" stop="32818"/>
              <exon start="27959" stop="27877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32898" stop="32818"/>
              <exon start="27959" stop="27873"/>
              <exon start="26585" stop="26494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18873" stop="18442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18833" stop="18442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18756" stop="18148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAAGTAAAAAAACCGAATGCGGCGACCGCGATGAACGTTGACAAGGAACAATCCGATTGCAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAAACCTGCACCGGAGCCGGCGCCGGAACCGTCACAGCAACCACCGAGAGAGTCTACTGCTCCGACGCCGTCCATGACGCAGATTAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTCTGACGCAGGTGAAACAGCCGCCGTCTATTGATCCCAGTGCGCTCTTTAGCGGCGGCGGTATTAG : CTTTCTGACTGGAAACAAAAATGCTAAATTCAGCTATGGATATGCTACTTTTAAGGGGAAACGGGCCTCCATGGAGGACTACTATGAGACAAGCATATCAGAAGTTGATGGTCAAATGGTGGCATTTTTTGGTGTTTTTGATG : GTCATGGTGGTTCAAGAACAGCAGAATACTTAAAGAACAACCTCTTTAAGAATTTGAGTAGTCATCCTGATTTTATCAAAGATACAAAGTCAGCTATAG : TTGAAGCATTTAAGCAGACTGATGTCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCCGGTTCAACAGCGTCAACTGCTGTTCTTTTAGGTGATAGATTGCTTGTCGCAAATGTGGGGGACTCTAGAGTCGTGGCTTGCAGAGATGGTTCAG : CTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG : GTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG : GACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCTATTTACATACATCTATTATTGTAGGTGTTCTCTATTTCACTTGGCCTACTTAGAATTCGTAATCCAGTATTTGTTAACGTTGTATTCTCCTAACTTTGTTACTCATGGGACTATAGTGATTATGTTTACTGGTACTTTCTTTGACTTCTGAGTTGTGATTCGATTTAATTTTTTTTCCAGAGACTCCATAGATAAATGTTGTACGTAGGCTGTATGTAAAGTCATTATTCGACTTATTAGGACACACTGTTACGTTTAGGTGCTATACAAATTATATTTCTTATACAATTAATA</gDNA_template>
            <first_frame> E  K  V  K  K  P  N  A  A  T  A  M  N  V  D  K  E  Q  S  D  C  N  L  P  E  L  S  P  P  S  M  E  K  P  A  P  E  P  A  P  E  P  S  Q  Q  P  P  R  E  S  T  A  P  T  P  S  M  T  Q  I  K  Q  P  P  S  L  T  Q  V  K  Q  P  P  S  L  T  Q  V  K  Q  P  P  S  L  T  Q  V  K  Q  P  P  S  I  D  P  S  A  L  F  S  G  G  G  I  S :   F  L  T  G  N  K  N  A  K  F  S  Y  G  Y  A  T  F  K  G  K  R  A  S  M  E  D  Y  Y  E  T  S  I  S  E  V  D  G  Q  M  V  A  F  F  G  V  F  D   : G  H  G  G  S  R  T  A  E  Y  L  K  N  N  L  F  K  N  L  S  S  H  P  D  F  I  K  D  T  K  S  A  I   : V  E  A  F  K  Q  T  D  V  D  Y  L  N  E  E  K  G  Q  Q  K  D  A  G  S  T  A  S  T  A  V  L  L  G  D  R  L  L  V  A  N  V  G  D  S  R  V  V  A  C  R  D  G  S   : A  I  P  L  S  I  D  H  K  P  D  R  S  D  E  R  E  R  I  E  Q  A  G  G  F  I  I  W  A   : G  T  W  R  V  G  G  V  L  A  V  S  R  A  F  G  D  K  M  L  K  P  Y  V  V  A  D  P  E  I  Q  :  D  I  K  D  A  E  A  A  S  R  K  L  I  E  E  A  Y  S  R  G  S  S  D  N  I  T  C  V  V  V  R  F  E  S  T  *  M  D  L  L  R  S  A  Y  L  S  F  T  Y  K  H  K  E  K  P  K  R  R  E  T  F  S  S  L  F  C  N  R  L  E  H  *  K  *  C  L  S  S  M  L  L  S  L  Q  I  K  D  P  E  V  R  M  *  A  L  *  L  A  Y  F  S  N  S  S  I  L  L  L  I  I  K  L  F  G  W  S  C  Q  L  K  *  *  S  *  G  F  L  W  I  L  S  A  Y  R  L  V  M  L  P  S  I  V  M  *  *  *  *  S  V  N  H  T  G  I  V  S  S  S  L  F  T  Y  I  Y  Y  C  R  C  S  L  F  H  L  A  Y  L  E  F  V  I  Q  Y  L  L  T  L  Y  S  P  N  F  V  T  H  G  T  I  V  I  M  F  T  G  T  F  F  D  F  *  V  V  I  R  F  N  F  F  S  R  D  S  I  D  K  C  C  T  *  A  V  C  K  V  I  I  R  L  I  R  T  H  C  Y  V  *  V  L  Y  K  L  Y  F  L  Y  N  *   </first_frame>
            <second_frame>  K  K  *  K  N  R  M  R  R  P  R  *  T  L  T  R  N  N  P  I  A  T  F  Q  N  F  L  H  R  P  W  R  N  L  H  R  S  R  R  R  N  R  H  S  N  H  R  E  S  L  L  L  R  R  R  P  *  R  R  L  N  S  R  R  L  *  R  R  *  N  S  R  R  L  *  R  R  *  N  S  R  R  L  *  R  R  *  N  S  R  R  L  L  I  P  V  R  S  L  A  A  A  V  L   : A  F  *  L  E  T  K  M  L  N  S  A  M  D  M  L  L  L  R  G  N  G  P  P  W  R  T  T  M  R  Q  A  Y  Q  K  L  M  V  K  W  W  H  F  L  V  F  L  M  :  V  M  V  V  Q  E  Q  Q  N  T  *  R  T  T  S  L  R  I  *  V  V  I  L  I  L  S  K  I  Q  S  Q  L  *  :  L  K  H  L  S  R  L  M  S  I  T  L  M  K  K  K  A  S  K  K  M  P  V  Q  Q  R  Q  L  L  F  F  *  V  I  D  C  L  S  Q  M  W  G  T  L  E  S  W  L  A  E  M  V  Q  :  L  F  L  C  P  L  I  T  S  L  T  D  Q  M  S  A  K  G  *  N  R  P  V  V  S  L  S  G  Q  :  V  H  G  V  *  V  G  S  L  L  F  L  V  H  L  E  I  K  C  *  S  H  M  L  W  Q  T  Q  R  F  R :   T  *  K  M  L  R  Q  L  H  V  S  L  L  K  K  L  I  Q  G  G  V  Q  I  T  S  P  V  W  L  F  D  L  K  A  H  E  W  T  F  *  G  L  P  T  F  P  L  L  T  N  I  K  K  N  Q  K  D  A  K  L  S  P  R  C  F  A  T  D  L  S  I  K  N  D  V  C  R  Q  C  Y  S  V  C  R  *  K  I  L  K  *  G  C  R  P  C  N  *  L  I  F  P  T  L  P  F  F  C  *  S  L  N  Y  S  G  G  H  V  S  *  S  S  D  H  E  D  F  Y  G  Y  S  P  L  I  D  L  *  C  C  L  Q  L  L  C  D  D  D  E  V  *  I  T  L  A  *  F  L  L  L  Y  L  H  T  S  I  I  V  G  V  L  Y  F  T  W  P  T  *  N  S  *  S  S  I  C  *  R  C  I  L  L  T  L  L  L  M  G  L  *  *  L  C  L  L  V  L  S  L  T  S  E  L  *  F  D  L  I  F  F  P  E  T  P  *  I  N  V  V  R  R  L  Y  V  K  S  L  F  D  L  L  G  H  T  V  T  F  R  C  Y  T  N  Y  I  S  Y  T  I  N  </second_frame>
            <third_frame>   K  S  K  K  T  E  C  G  D  R  D  E  R  *  Q  G  T  I  R  L  Q  P  S  R  T  F  S  T  V  H  G  E  T  C  T  G  A  G  A  G  T  V  T  A  T  T  E  R  V  Y  C  S  D  A  V  H  D  A  D  *  T  A  A  V  S  D  A  G  E  T  A  A  V  S  D  A  G  E  T  A  A  V  S  D  A  G  E  T  A  A  V  Y  *  S  Q  C  A  L  *  R  R  R  Y  *  :  L  S  D  W  K  Q  K  C  *  I  Q  L  W  I  C  Y  F  *  G  E  T  G  L  H  G  G  L  L  *  D  K  H  I  R  S  *  W  S  N  G  G  I  F  W  C  F  *  W :   S  W  W  F  K  N  S  R  I  L  K  E  Q  P  L  *  E  F  E  *  S  S  *  F  Y  Q  R  Y  K  V  S  Y  S :   *  S  I  *  A  D  *  C  R  L  P  *  *  R  K  R  P  A  K  R  C  R  F  N  S  V  N  C  C  S  F  R  *  *  I  A  C  R  K  C  G  G  L  *  S  R  G  L  Q  R  W  F  S :   Y  S  F  V  H  *  S  Q  A  *  Q  I  R  *  A  R  K  D  R  T  G  R  W  F  H  Y  L  G  R :   Y  M  A  C  R  W  G  P  C  C  F  S  C  I  W  R  *  N  A  K  A  I  C  C  G  R  P  R  D  S   : G  H  K  R  C  *  G  S  F  T  *  A  Y  *  R  S  L  F  K  G  E  F  R  *  H  H  L  C  G  C  S  I  *  K  H  M  N  G  P  F  K  V  C  L  P  F  L  Y  L  Q  T  *  R  K  T  K  K  T  R  N  F  L  L  V  V  L  Q  Q  T  *  A  L  K  M  M  F  V  V  N  A  T  Q  S  A  D  K  R  S  *  S  E  D  V  G  L  V  T  S  L  F  F  Q  L  F  H  S  S  V  D  H  *  I  I  R  V  V  M  S  V  E  V  V  I  M  R  I  S  M  D  T  L  R  L  *  T  C  N  V  A  F  N  C  Y  V  M  M  M  K  C  K  S  H  W  H  S  F  F  F  S  I  Y  I  H  L  L  L  *  V  F  S  I  S  L  G  L  L  R  I  R  N  P  V  F  V  N  V  V  F  S  *  L  C  Y  S  W  D  Y  S  D  Y  V  Y  W  Y  F  L  *  L  L  S  C  D  S  I  *  F  F  F  Q  R  L  H  R  *  M  L  Y  V  G  C  M  *  S  H  Y  S  T  Y  *  D  T  L  L  R  L  G  A  I  Q  I  I  F  L  I  Q  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38429" stop="38116"/>
                    <exon start="34663" stop="34521"/>
                    <exon start="33166" stop="33068"/>
                    <exon start="32976" stop="32818"/>
                    <exon start="27959" stop="27873"/>
                    <exon start="26585" stop="26494"/>
                    <exon start="18917" stop="18810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKVKKPNAATAMNVDKEQSDCNLPELSPPSMEKPAPEPAPEPSQQPPRESTAPTPSMTQIKQPPSLTQVKQPPSLTQVKQPPSLTQVKQPPSIDPSALFSGGGISFLTGNKNAKFSYGYATFKGKRASMEDYYETSISEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKSAIVEAFKQTDVDYLNEEKGQQKDAGSTASTAVLLGDRLLVANVGDSRVVACRDGSAIPLSIDHKPDRSDERERIEQAGGFIIWAGTWRVGGVLAVSRAFGDKMLKPYVVADPEIQDIKDAEAASRKLIEEAYSRGSSDNITCVVVRFEST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="27963" e_stop="27873"/>
            <exon e_start="26585" e_stop="26494"/>
            <exon e_start="24235" e_stop="24164"/>
            <exon e_start="18938" e_stop="18148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.992" e_score="0.978"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="27963" e_stop="27873" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.992">
            <gDNA_intron_boundary i_start="27872" i_stop="26586" i_length="1287"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26585" e_stop="26494" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="26493" i_stop="24236" i_length="2258"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24235" e_stop="24164" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24163" i_stop="18939" i_length="5225"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="18938" e_stop="18148" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27963" stop="27873"/>
              <exon start="26585" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26579" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26558" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26511" stop="26494"/>
              <exon start="24235" stop="24164"/>
              <exon start="18938" stop="18477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18873" stop="18442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18833" stop="18442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18756" stop="18148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGCTATTCCTTTGTCCATTGATCACAAGCCTGACAGATCAGATGAGCGCGAAAGGATAGAACAGGCCGGTGGTTTCATTATCTGGGCAG : GTACATGGCGTGTAGGTGGGGTCCTTGCTGTTTCTCGTGCATTTGGAGATAAAATGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAG : GAAGAAGAAATTGATGGTGTACAATTTTTGATAGTTGCGAGTGATGGGCTTTGGAATGTCCTCTCTAACGAG : GAGGCCGTGACCATTGTGCAGGACATAAAAGATGCTGAGGCAGCTTCACGTAAGCTTATTGAAGAAGCTTATTCAAGGGGGAGTTCAGATAACATCACCTGTGTGGTTGTTCGATTTGAAAGCACATGAATGGACCTTTTAAGGTCTGCCTACCTTTCCTTTACTTACAAACATAAAGAAAAACCAAAAAGACGCGAAACTTTCTCCTCGTTGTTTTGCAACAGACTTGAGCATTAAAAATGATGTTTGTCGTCAATGCTACTCAGTCTGCAGATAAAAGATCCTGAAGTGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTCTTCCATTCTTCTGTTGATCATTAAATTATTCGGGTGGTCATGTCAGTTGAAGTAGTGATCATGAGGATTTCTATGGATACTCTCCGCTTATAGACTTGTAATGTTGCCTTCAATTGTTATGTGATGATGATGAAGTGTAAATCACACTGGCATAGTTTCTTCTTCTCTATTTACATACATCTATTATTGTAGGTGTTCTCTATTTCACTTGGCCTACTTAGAATTCGTAATCCAGTATTTGTTAACGTTGTATTCTCCTAACTTTGTTACTCATGGGACTATAGTGATTATGTTTACTGGTACTTTCTTTGACTTCTGAGTTGTGATTCGATTTAATTTTTTTTCCAGAGACTCCATAGATAAATGTTGTACGTAGGCTGTATGTAAAGTCATTATTCGACTTATTAGGACACACTGTTACGTTTAGGTGCTATACAAATTATATTTCTTATACAATTAATA</gDNA_template>
            <first_frame> A  A  I  P  L  S  I  D  H  K  P  D  R  S  D  E  R  E  R  I  E  Q  A  G  G  F  I  I  W  A   : G  T  W  R  V  G  G  V  L  A  V  S  R  A  F  G  D  K  M  L  K  P  Y  V  V  A  D  P  E  I  Q  :  E  E  E  I  D  G  V  Q  F  L  I  V  A  S  D  G  L  W  N  V  L  S  N  E  :  E  A  V  T  I  V  Q  D  I  K  D  A  E  A  A  S  R  K  L  I  E  E  A  Y  S  R  G  S  S  D  N  I  T  C  V  V  V  R  F  E  S  T  *  M  D  L  L  R  S  A  Y  L  S  F  T  Y  K  H  K  E  K  P  K  R  R  E  T  F  S  S  L  F  C  N  R  L  E  H  *  K  *  C  L  S  S  M  L  L  S  L  Q  I  K  D  P  E  V  R  M  *  A  L  *  L  A  Y  F  S  N  S  S  I  L  L  L  I  I  K  L  F  G  W  S  C  Q  L  K  *  *  S  *  G  F  L  W  I  L  S  A  Y  R  L  V  M  L  P  S  I  V  M  *  *  *  *  S  V  N  H  T  G  I  V  S  S  S  L  F  T  Y  I  Y  Y  C  R  C  S  L  F  H  L  A  Y  L  E  F  V  I  Q  Y  L  L  T  L  Y  S  P  N  F  V  T  H  G  T  I  V  I  M  F  T  G  T  F  F  D  F  *  V  V  I  R  F  N  F  F  S  R  D  S  I  D  K  C  C  T  *  A  V  C  K  V  I  I  R  L  I  R  T  H  C  Y  V  *  V  L  Y  K  L  Y  F  L  Y  N  *   </first_frame>
            <second_frame>  Q  L  F  L  C  P  L  I  T  S  L  T  D  Q  M  S  A  K  G  *  N  R  P  V  V  S  L  S  G  Q  :  V  H  G  V  *  V  G  S  L  L  F  L  V  H  L  E  I  K  C  *  S  H  M  L  W  Q  T  Q  R  F  R :   K  K  K  L  M  V  Y  N  F  *  *  L  R  V  M  G  F  G  M  S  S  L  T  R :   R  P  *  P  L  C  R  T  *  K  M  L  R  Q  L  H  V  S  L  L  K  K  L  I  Q  G  G  V  Q  I  T  S  P  V  W  L  F  D  L  K  A  H  E  W  T  F  *  G  L  P  T  F  P  L  L  T  N  I  K  K  N  Q  K  D  A  K  L  S  P  R  C  F  A  T  D  L  S  I  K  N  D  V  C  R  Q  C  Y  S  V  C  R  *  K  I  L  K  *  G  C  R  P  C  N  *  L  I  F  P  T  L  P  F  F  C  *  S  L  N  Y  S  G  G  H  V  S  *  S  S  D  H  E  D  F  Y  G  Y  S  P  L  I  D  L  *  C  C  L  Q  L  L  C  D  D  D  E  V  *  I  T  L  A  *  F  L  L  L  Y  L  H  T  S  I  I  V  G  V  L  Y  F  T  W  P  T  *  N  S  *  S  S  I  C  *  R  C  I  L  L  T  L  L  L  M  G  L  *  *  L  C  L  L  V  L  S  L  T  S  E  L  *  F  D  L  I  F  F  P  E  T  P  *  I  N  V  V  R  R  L  Y  V  K  S  L  F  D  L  L  G  H  T  V  T  F  R  C  Y  T  N  Y  I  S  Y  T  I  N  </second_frame>
            <third_frame>   S  Y  S  F  V  H  *  S  Q  A  *  Q  I  R  *  A  R  K  D  R  T  G  R  W  F  H  Y  L  G  R :   Y  M  A  C  R  W  G  P  C  C  F  S  C  I  W  R  *  N  A  K  A  I  C  C  G  R  P  R  D  S   : G  R  R  N  *  W  C  T  I  F  D  S  C  E  *  W  A  L  E  C  P  L  *  R   : G  G  R  D  H  C  A  G  H  K  R  C  *  G  S  F  T  *  A  Y  *  R  S  L  F  K  G  E  F  R  *  H  H  L  C  G  C  S  I  *  K  H  M  N  G  P  F  K  V  C  L  P  F  L  Y  L  Q  T  *  R  K  T  K  K  T  R  N  F  L  L  V  V  L  Q  Q  T  *  A  L  K  M  M  F  V  V  N  A  T  Q  S  A  D  K  R  S  *  S  E  D  V  G  L  V  T  S  L  F  F  Q  L  F  H  S  S  V  D  H  *  I  I  R  V  V  M  S  V  E  V  V  I  M  R  I  S  M  D  T  L  R  L  *  T  C  N  V  A  F  N  C  Y  V  M  M  M  K  C  K  S  H  W  H  S  F  F  F  S  I  Y  I  H  L  L  L  *  V  F  S  I  S  L  G  L  L  R  I  R  N  P  V  F  V  N  V  V  F  S  *  L  C  Y  S  W  D  Y  S  D  Y  V  Y  W  Y  F  L  *  L  L  S  C  D  S  I  *  F  F  F  Q  R  L  H  R  *  M  L  Y  V  G  C  M  *  S  H  Y  S  T  Y  *  D  T  L  L  R  L  G  A  I  Q  I  I  F  L  I  Q  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27963" stop="27873"/>
                    <exon start="26585" stop="26494"/>
                    <exon start="24235" stop="24164"/>
                    <exon start="18938" stop="18810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAIPLSIDHKPDRSDERERIEQAGGFIIWAGTWRVGGVLAVSRAFGDKMLKPYVVADPEIQEEEIDGVQFLIVASDGLWNVLSNEEAVTIVQDIKDAEAASRKLIEEAYSRGSSDNITCVVVRFEST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="19700" e_stop="19238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="19700" e_stop="19238" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19700" stop="19238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATTTCAAATTCCTTGCATTGTCAAACAATGTCACATTAAAAAGGAGGGACAGAGTATAAATTTGATGGGTGGAAGGAGGTGACCGAGGATGCTCTGAGGTGGATGATTAATCCAGACATCTCCATTTGAAACCTCAGAACCTGGACTGAATTTGAATGGCTCATACATGGGTTTCTTTTATTTCTTCGGTCTTTGTTTCAACCTGGAGCTTGTCATTAAAAGGTAGGAACATCAAAAAAGAGATGAAAATCTTCTCTAAGTTCATTAGTGATCAGGAACTCAGTTTTGTAATTCCAAGTTGAGCTTTAAATTTTCGTAGGTTTGAGGTTGAAATTGAGGGGAAAAGACTTGCTAATGTATTCACTATTTTGGGAGTTTGATGAAAGTGGGAACTATTATGCTCAGAAGAATTGGCCAGAATTGGTTCATAGGCTTAGAGCTTGATGTAATGCTTCTTTGC</gDNA_template>
            <first_frame> *  I  S  N  S  L  H  C  Q  T  M  S  H  *  K  G  G  T  E  Y  K  F  D  G  W  K  E  V  T  E  D  A  L  R  W  M  I  N  P  D  I  S  I  *  N  L  R  T  W  T  E  F  E  W  L  I  H  G  F  L  L  F  L  R  S  L  F  Q  P  G  A  C  H  *  K  V  G  T  S  K  K  R  *  K  S  S  L  S  S  L  V  I  R  N  S  V  L  *  F  Q  V  E  L  *  I  F  V  G  L  R  L  K  L  R  G  K  D  L  L  M  Y  S  L  F  W  E  F  D  E  S  G  N  Y  Y  A  Q  K  N  W  P  E  L  V  H  R  L  R  A  *  C  N  A  S  L  </first_frame>
            <second_frame>  K  F  Q  I  P  C  I  V  K  Q  C  H  I  K  K  E  G  Q  S  I  N  L  M  G  G  R  R  *  P  R  M  L  *  G  G  *  L  I  Q  T  S  P  F  E  T  S  E  P  G  L  N  L  N  G  S  Y  M  G  F  F  Y  F  F  G  L  C  F  N  L  E  L  V  I  K  R  *  E  H  Q  K  R  D  E  N  L  L  *  V  H  *  *  S  G  T  Q  F  C  N  S  K  L  S  F  K  F  S  *  V  *  G  *  N  *  G  E  K  T  C  *  C  I  H  Y  F  G  S  L  M  K  V  G  T  I  M  L  R  R  I  G  Q  N  W  F  I  G  L  E  L  D  V  M  L  L  C </second_frame>
            <third_frame>   N  F  K  F  L  A  L  S  N  N  V  T  L  K  R  R  D  R  V  *  I  *  W  V  E  G  G  D  R  G  C  S  E  V  D  D  *  S  R  H  L  H  L  K  P  Q  N  L  D  *  I  *  M  A  H  T  W  V  S  F  I  S  S  V  F  V  S  T  W  S  L  S  L  K  G  R  N  I  K  K  E  M  K  I  F  S  K  F  I  S  D  Q  E  L  S  F  V  I  P  S  *  A  L  N  F  R  R  F  E  V  E  I  E  G  K  R  L  A  N  V  F  T  I  L  G  V  *  *  K  W  E  L  L  C  S  E  E  L  A  R  I  G  S  *  A  *  S  L  M  *  C  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0213A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="18308" PGL_stop="20553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18308" e_stop="18940"/>
            <exon e_start="20536" e_stop="20553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.496" e_score="1.000"/>
          <exon-only e_score="0.611"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18308" e_stop="18940" e_length="633"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.496">
            <gDNA_intron_boundary i_start="18941" i_stop="20535" i_length="1595"/>
          </intron>
          <exon e_serial="2" e_score="0.611">
            <gDNA_exon_boundary e_start="20536" e_stop="20553" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18308" stop="18940"/>
              <exon start="20536" stop="20553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714685" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCAGTAAACATAATCACTATAGTCCCATGAGTAACAAAGTTAGGAGAATACAACGTTAACAAATACTGGATTACGAATTCTAAGTAGGCCAAGTGAAATAGAGAACACCTACAATAATAGATGTATGTAAATAGAGAAGAAGAAACTATGCCAGTGTGATTTACACTTCATCATCATCACATAACAATTGAAGGCAACATTACAAGTCTATAAGCGGAGAGTATCCATAGAAATCCTCATGATCACTACTTCAACTGACATGACCACCCGAATAATTTAATGATCAACAGAAGAATGGAAGAGTTGGAAAAATAAGCTAGTTACAAGGCCTACATCCTCACTTCAGGATCTTTTATCTGCAGACTGAGTAGCATTGACGACAAACATCATTTTTAATGCTCAAGTCTGTTGCAAAACAACGAGGAGAAAGTTTCGCGTCTTTTTGGTTTTTCTTTATGTTTGTAAGTAAAGGAAAGGTAGGCAGACCTTAAAAGGTCCATTCATGTGCTTTCAAATCGAACAACCACACAGGTGATGTTATCTGAACTCCCCCTTGAATAAGCTTCTTCAATAAGCTTACGTGAAGCTGCCTCAGCATCTTTTATGTCCTGCACAATGGTCACGGCCTCCT : GGCTAAAAGGTACTTTCC</gDNA_template>
            <first_frame> Y  Q  *  T  *  S  L  *  S  H  E  *  Q  S  *  E  N  T  T  L  T  N  T  G  L  R  I  L  S  R  P  S  E  I  E  N  T  Y  N  N  R  C  M  *  I  E  K  K  K  L  C  Q  C  D  L  H  F  I  I  I  T  *  Q  L  K  A  T  L  Q  V  Y  K  R  R  V  S  I  E  I  L  M  I  T  T  S  T  D  M  T  T  R  I  I  *  *  S  T  E  E  W  K  S  W  K  N  K  L  V  T  R  P  T  S  S  L  Q  D  L  L  S  A  D  *  V  A  L  T  T  N  I  I  F  N  A  Q  V  C  C  K  T  T  R  R  K  F  R  V  F  L  V  F  L  Y  V  C  K  *  R  K  G  R  Q  T  L  K  G  P  F  M  C  F  Q  I  E  Q  P  H  R  *  C  Y  L  N  S  P  L  N  K  L  L  Q  *  A  Y  V  K  L  P  Q  H  L  L  C  P  A  Q  W  S  R  P  P  :  G  *  K  V  L  S </first_frame>
            <second_frame>  T  S  K  H  N  H  Y  S  P  M  S  N  K  V  R  R  I  Q  R  *  Q  I  L  D  Y  E  F  *  V  G  Q  V  K  *  R  T  P  T  I  I  D  V  C  K  *  R  R  R  N  Y  A  S  V  I  Y  T  S  S  S  S  H  N  N  *  R  Q  H  Y  K  S  I  S  G  E  Y  P  *  K  S  S  *  S  L  L  Q  L  T  *  P  P  E  *  F  N  D  Q  Q  K  N  G  R  V  G  K  I  S  *  L  Q  G  L  H  P  H  F  R  I  F  Y  L  Q  T  E  *  H  *  R  Q  T  S  F  L  M  L  K  S  V  A  K  Q  R  G  E  S  F  A  S  F  W  F  F  F  M  F  V  S  K  G  K  V  G  R  P  *  K  V  H  S  C  A  F  K  S  N  N  H  T  G  D  V  I  *  T  P  P  *  I  S  F  F  N  K  L  T  *  S  C  L  S  I  F  Y  V  L  H  N  G  H  G  L  L :   A  K  R  Y  F   </second_frame>
            <third_frame>   P  V  N  I  I  T  I  V  P  *  V  T  K  L  G  E  Y  N  V  N  K  Y  W  I  T  N  S  K  *  A  K  *  N  R  E  H  L  Q  *  *  M  Y  V  N  R  E  E  E  T  M  P  V  *  F  T  L  H  H  H  H  I  T  I  E  G  N  I  T  S  L  *  A  E  S  I  H  R  N  P  H  D  H  Y  F  N  *  H  D  H  P  N  N  L  M  I  N  R  R  M  E  E  L  E  K  *  A  S  Y  K  A  Y  I  L  T  S  G  S  F  I  C  R  L  S  S  I  D  D  K  H  H  F  *  C  S  S  L  L  Q  N  N  E  E  K  V  S  R  L  F  G  F  S  L  C  L  *  V  K  E  R  *  A  D  L  K  R  S  I  H  V  L  S  N  R  T  T  T  Q  V  M  L  S  E  L  P  L  E  *  A  S  S  I  S  L  R  E  A  A  S  A  S  F  M  S  C  T  M  V  T  A  S   : W  L  K  G  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0213A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18480" e_stop="19030"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="18480" e_stop="19030" e_length="551"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18480" stop="19030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302182" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCATCACATAACAATTGAAGGCAACATTACAAGTCTATAAGCGGAGAGTATCCATAGAAATCCTCATGATCACTACTTCAACTGACATGACCACCCGAATAATTTAATGATCAACAGAAGAATGGAAGAGTTGGAAAAATAAGCTAGTTACAAGGCCTACATCCTCACTTCAGGATCTTTTATCTGCAGACTGAGTAGCATTGACGACAAACATCATTTTTAATGCTCAAGTCTGTTGCAAAACAACGAGGAGAAAGTTTCGCGTCTTTTTGGTTTTTCTTTATGTTTGTAAGTAAAGGAAAGGTAGGCAGACCTTAAAAGGTCCATTCATGTGCTTTCAAATCGAACAACCACACAGGTGATGTTATCTGAACTCCCCCTTGAATAAGCTTCTTCAATAAGCTTACGTGAAGCTGCCTCAGCATCTTTTATGTCCTGCACAATGGTCACGGCCTCCTGTATGTAATGAATAGAAGTTAAACAGTTAATGTTCATAACTGCATGAATCTTTAAGAAAGCAATCAGCAAATAACAACATACTAGACACA</gDNA_template>
            <first_frame> S  S  S  H  N  N  *  R  Q  H  Y  K  S  I  S  G  E  Y  P  *  K  S  S  *  S  L  L  Q  L  T  *  P  P  E  *  F  N  D  Q  Q  K  N  G  R  V  G  K  I  S  *  L  Q  G  L  H  P  H  F  R  I  F  Y  L  Q  T  E  *  H  *  R  Q  T  S  F  L  M  L  K  S  V  A  K  Q  R  G  E  S  F  A  S  F  W  F  F  F  M  F  V  S  K  G  K  V  G  R  P  *  K  V  H  S  C  A  F  K  S  N  N  H  T  G  D  V  I  *  T  P  P  *  I  S  F  F  N  K  L  T  *  S  C  L  S  I  F  Y  V  L  H  N  G  H  G  L  L  Y  V  M  N  R  S  *  T  V  N  V  H  N  C  M  N  L  *  E  S  N  Q  Q  I  T  T  Y  *  T   </first_frame>
            <second_frame>  H  H  H  I  T  I  E  G  N  I  T  S  L  *  A  E  S  I  H  R  N  P  H  D  H  Y  F  N  *  H  D  H  P  N  N  L  M  I  N  R  R  M  E  E  L  E  K  *  A  S  Y  K  A  Y  I  L  T  S  G  S  F  I  C  R  L  S  S  I  D  D  K  H  H  F  *  C  S  S  L  L  Q  N  N  E  E  K  V  S  R  L  F  G  F  S  L  C  L  *  V  K  E  R  *  A  D  L  K  R  S  I  H  V  L  S  N  R  T  T  T  Q  V  M  L  S  E  L  P  L  E  *  A  S  S  I  S  L  R  E  A  A  S  A  S  F  M  S  C  T  M  V  T  A  S  C  M  *  *  I  E  V  K  Q  L  M  F  I  T  A  *  I  F  K  K  A  I  S  K  *  Q  H  T  R  H  </second_frame>
            <third_frame>   I  I  T  *  Q  L  K  A  T  L  Q  V  Y  K  R  R  V  S  I  E  I  L  M  I  T  T  S  T  D  M  T  T  R  I  I  *  *  S  T  E  E  W  K  S  W  K  N  K  L  V  T  R  P  T  S  S  L  Q  D  L  L  S  A  D  *  V  A  L  T  T  N  I  I  F  N  A  Q  V  C  C  K  T  T  R  R  K  F  R  V  F  L  V  F  L  Y  V  C  K  *  R  K  G  R  Q  T  L  K  G  P  F  M  C  F  Q  I  E  Q  P  H  R  *  C  Y  L  N  S  P  L  N  K  L  L  Q  *  A  Y  V  K  L  P  Q  H  L  L  C  P  A  Q  W  S  R  P  P  V  C  N  E  *  K  L  N  S  *  C  S  *  L  H  E  S  L  R  K  Q  S  A  N  N  N  I  L  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0213A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="44312" PGL_stop="53309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44312" e_stop="44325"/>
            <exon e_start="44466" e_stop="44826"/>
            <exon e_start="51706" e_stop="53309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.484" acc_prob="0.514" e_score="0.714"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.989"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.714">
            <gDNA_exon_boundary e_start="44312" e_stop="44325" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.484" acc_prob="0.514">
            <gDNA_intron_boundary i_start="44326" i_stop="44465" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="44466" e_stop="44826" e_length="361"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="51706" e_stop="53309" e_length="1604"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44312" stop="44325"/>
              <exon start="44466" stop="44826"/>
              <exon start="51706" stop="53309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44312" stop="44325"/>
              <exon start="44466" stop="44826"/>
              <exon start="51706" stop="51946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44505" stop="44826"/>
              <exon start="51706" stop="51932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44533" stop="44826"/>
              <exon start="51706" stop="52107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44533" stop="44826"/>
              <exon start="51706" stop="52041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44538" stop="44826"/>
              <exon start="51706" stop="51902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44548" stop="44826"/>
              <exon start="51706" stop="51917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44586" stop="44826"/>
              <exon start="51706" stop="52108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44586" stop="44826"/>
              <exon start="51706" stop="52071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44601" stop="44826"/>
              <exon start="51706" stop="52025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52820" stop="53309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAATATGAAATG : CATTCTGCCCTGTTGTAGATCTGAATATCAATCTCCATTACAGTGCCACTCATAACTCCGAAAAAACTCGCTTCAATAAAACCCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG : AGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTACTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAGACTGAAAGGTAAAATCCAAAGCCTTGAAGAACAGGCAAATTCCTTCAGTGAGAAGAGTTCAAAATATGGACAAATTGCTGCTGAAGAAGTCCCTAAAAGTCTCTATTGCCTTGGTGTCCGGTTAACAGCTGAATGGTTCAGAAGTTCCAATTTGCAGAAACAATTCAAGGAAGAAAAGCAAGCAGCTGCCAAACTTGTGGACACTGGTTTGTATCATTTCTGTGTATTCTCAGACAACATCCTTGCAACTTCGGTTGTGGTGAATTCAACGGCTATGAATTCCAAGAATCCTGATATGGTGGTCTTCCACCTTGTAACAGATGAGGTGAACTATGCTGCCATGAAGGCATGGTTCACCATGAACAGTTTCCGAGGAGTGACTGTTGTTGTACAAAAGATTGAAGAGTTTAGTTGGTTAAATGCTTCGTATGTACCTGTTCTAAAACAACTTCAAGACTCTGACACCCAGAACTACTACTTTTCTGGCAACCATGATAACAGCCGTACTCCGATCAAATTCAGAAACCCTAAATATCTATCAATGCTTAACCATCTGAGATTCTATATTCCAGAAGTTTTTCCTGCACTTAAGAAGGTTGTGTTTCTCGATGATGATGTTGTAGTGCAGAAGGATCTTTCAGCCCTATTCACCACAGATTTGAATGGAAATGTAAATGGTGCAGTGGAGACTTGTATGGAGACATTCCATAGATATCACAAGTACCTAAATTATTCTCACCCGCTTATTCGTCAACATTTTGATCCTGATGCATGTGGGTGGGCCTTCGGGATGAATGTTTTCGATTTGGTTGAGTGGCGCAAAAGGAATGTTACTGGCATATACCATTACTGGCAGGACAAGAACGTGGACCGCACATTGTGGAAGCTTGGTACTTTACCACCTGGATTGCTGACCTTCTATGGATTGACAGAGGCTTTGAATCCTTCATGGCATGTCTTAGGTTTTGGTTACACGAATGTCGACTCCAAATTGATAGAAAAGGGAGCTGTGCTGCACTTCAATGGTAACTCAAAACCCTGGTTGAAGATTGGTATTGAGAAGTACAAGCCACTCTGGGACAAATATGTTGATTATAGTCATCCTTTATTACAACAATGCAATTTTCACTAAGTTGTCTTTAATTAATTTAATCATATATAGTTCTCACAGAGGTGGTAATTTTGGGGATCTGTAATGGGTTCTGTGAGATTAAGATATTGTCATCTCTTGTGCTTATTCCAATTTGTTGTAGTATAGCTTTTGAAACAAACATCAAGGCACCA</gDNA_template>
            <first_frame> I  N  M  K  C :   I  L  P  C  C  R  S  E  Y  Q  S  P  L  Q  C  H  S  *  L  R  K  N  S  L  Q  *  N  P  N  L  Q  F  N  Q  I  L  R  F  P  T  F  G  C  H  N  I  L  *  L  K  K  S  L  Y  R  R  F  T  R  N  Y  L  Y  S  V  V  A  G  K  M  R  R  R  N  S  D  F  R  R  P  V  R  R  R  F  S  N  V  F  W  L  T  L  C  G  L  V  V  L  L  L  I  I  L  L  S  R  T  T  R  D  S  S  S  R  L  V  Y  T  K  :  R  P  Y  R  H  D  R  I  A  D  G  L  N  I  T  E  E  M  L  R  P  E  S  M  T  R  Q  I  N  D  Q  I  S  L  A  K  A  I  L  V  I  A  K  E  S  N  N  L  Q  F  A  W  E  L  S  A  Q  I  R  N  S  Q  M  L  L  S  N  A  A  S  R  R  S  P  L  T  N  G  E  S  E  S  A  I  R  D  M  A  L  L  L  Y  Q  A  Q  Q  L  H  Y  D  S  A  T  M  F  M  R  L  K  G  K  I  Q  S  L  E  E  Q  A  N  S  F  S  E  K  S  S  K  Y  G  Q  I  A  A  E  E  V  P  K  S  L  Y  C  L  G  V  R  L  T  A  E  W  F  R  S  S  N  L  Q  K  Q  F  K  E  E  K  Q  A  A  A  K  L  V  D  T  G  L  Y  H  F  C  V  F  S  D  N  I  L  A  T  S  V  V  V  N  S  T  A  M  N  S  K  N  P  D  M  V  V  F  H  L  V  T  D  E  V  N  Y  A  A  M  K  A  W  F  T  M  N  S  F  R  G  V  T  V  V  V  Q  K  I  E  E  F  S  W  L  N  A  S  Y  V  P  V  L  K  Q  L  Q  D  S  D  T  Q  N  Y  Y  F  S  G  N  H  D  N  S  R  T  P  I  K  F  R  N  P  K  Y  L  S  M  L  N  H  L  R  F  Y  I  P  E  V  F  P  A  L  K  K  V  V  F  L  D  D  D  V  V  V  Q  K  D  L  S  A  L  F  T  T  D  L  N  G  N  V  N  G  A  V  E  T  C  M  E  T  F  H  R  Y  H  K  Y  L  N  Y  S  H  P  L  I  R  Q  H  F  D  P  D  A  C  G  W  A  F  G  M  N  V  F  D  L  V  E  W  R  K  R  N  V  T  G  I  Y  H  Y  W  Q  D  K  N  V  D  R  T  L  W  K  L  G  T  L  P  P  G  L  L  T  F  Y  G  L  T  E  A  L  N  P  S  W  H  V  L  G  F  G  Y  T  N  V  D  S  K  L  I  E  K  G  A  V  L  H  F  N  G  N  S  K  P  W  L  K  I  G  I  E  K  Y  K  P  L  W  D  K  Y  V  D  Y  S  H  P  L  L  Q  Q  C  N  F  H  *  V  V  F  N  *  F  N  H  I  *  F  S  Q  R  W  *  F  W  G  S  V  M  G  S  V  R  L  R  Y  C  H  L  L  C  L  F  Q  F  V  V  V  *  L  L  K  Q  T  S  R  H   </first_frame>
            <second_frame>  S  I  *  N   : A  F  C  P  V  V  D  L  N  I  N  L  H  Y  S  A  T  H  N  S  E  K  T  R  F  N  K  T  Q  I  F  N  S  T  K  F  F  D  F  P  L  L  G  A  T  I  Y  C  D  *  R  S  H  C  T  A  D  L  L  E  I  I  C  I  Q  *  S  P  E  K  *  D  G  G  T  R  I  S  G  G  R  *  G  G  D  S  P  M  F  F  G  *  L  C  V  D  W  S  Y  C  C  S  L  F  C  S  A  E  Q  L  A  I  H  R  L  D  W  F  I  Q  R :   D  L  I  G  M  T  E  L  R  M  V  S  T  L  L  K  K  C  *  G  L  N  R  *  R  D  K  L  M  I  R  F  L  L  Q  K  Q  F  L  *  L  Q  K  K  A  T  T  F  N  L  H  G  N  *  V  L  K  S  A  T  H  R  C  F  F  L  M  L  L  Q  E  E  A  P  *  Q  T  E  N  Q  K  V  Q  F  E  I  W  H  F  Y  S  T  K  P  S  N  F  T  M  T  V  Q  P  C  L  *  D  *  K  V  K  S  K  A  L  K  N  R  Q  I  P  S  V  R  R  V  Q  N  M  D  K  L  L  L  K  K  S  L  K  V  S  I  A  L  V  S  G  *  Q  L  N  G  S  E  V  P  I  C  R  N  N  S  R  K  K  S  K  Q  L  P  N  L  W  T  L  V  C  I  I  S  V  Y  S  Q  T  T  S  L  Q  L  R  L  W  *  I  Q  R  L  *  I  P  R  I  L  I  W  W  S  S  T  L  *  Q  M  R  *  T  M  L  P  *  R  H  G  S  P  *  T  V  S  E  E  *  L  L  L  Y  K  R  L  K  S  L  V  G  *  M  L  R  M  Y  L  F  *  N  N  F  K  T  L  T  P  R  T  T  T  F  L  A  T  M  I  T  A  V  L  R  S  N  S  E  T  L  N  I  Y  Q  C  L  T  I  *  D  S  I  F  Q  K  F  F  L  H  L  R  R  L  C  F  S  M  M  M  L  *  C  R  R  I  F  Q  P  Y  S  P  Q  I  *  M  E  M  *  M  V  Q  W  R  L  V  W  R  H  S  I  D  I  T  S  T  *  I  I  L  T  R  L  F  V  N  I  L  I  L  M  H  V  G  G  P  S  G  *  M  F  S  I  W  L  S  G  A  K  G  M  L  L  A  Y  T  I  T  G  R  T  R  T  W  T  A  H  C  G  S  L  V  L  Y  H  L  D  C  *  P  S  M  D  *  Q  R  L  *  I  L  H  G  M  S  *  V  L  V  T  R  M  S  T  P  N  *  *  K  R  E  L  C  C  T  S  M  V  T  Q  N  P  G  *  R  L  V  L  R  S  T  S  H  S  G  T  N  M  L  I  I  V  I  L  Y  Y  N  N  A  I  F  T  K  L  S  L  I  N  L  I  I  Y  S  S  H  R  G  G  N  F  G  D  L  *  W  V  L  *  D  *  D  I  V  I  S  C  A  Y  S  N  L  L  *  Y  S  F  *  N  K  H  Q  G  T  </second_frame>
            <third_frame>   Q  Y  E  M  :  H  S  A  L  L  *  I  *  I  S  I  S  I  T  V  P  L  I  T  P  K  K  L  A  S  I  K  P  K  S  S  I  Q  P  N  S  S  I  S  H  F  W  V  P  Q  Y  T  V  T  E  E  V  T  V  P  Q  I  Y  S  K  L  F  V  F  S  S  R  R  K  N  E  T  E  E  L  G  F  P  A  A  G  E  A  A  I  L  Q  C  F  L  V  N  F  V  W  I  G  R  I  A  A  H  Y  F  A  Q  Q  N  N  S  R  F  I  V  *  I  G  L  Y  K   : E  T  L  *  A  *  Q  N  C  G  W  S  Q  H  Y  *  R  N  A  E  A  *  I  D  D  E  T  N  *  *  S  D  F  S  C  K  S  N  S  C  N  C  K  R  K  Q  Q  P  S  I  C  M  G  T  K  C  S  N  P  Q  L  T  D  A  S  F  *  C  C  F  K  K  K  P  L  D  K  R  R  I  R  K  C  N  S  R  Y  G  T  S  T  L  P  S  P  A  T  S  L  *  Q  C  N  H  V  Y  E  T  E  R  *  N  P  K  P  *  R  T  G  K  F  L  Q  *  E  E  F  K  I  W  T  N  C  C  *  R  S  P  *  K  S  L  L  P  W  C  P  V  N  S  *  M  V  Q  K  F  Q  F  A  E  T  I  Q  G  R  K  A  S  S  C  Q  T  C  G  H  W  F  V  S  F  L  C  I  L  R  Q  H  P  C  N  F  G  C  G  E  F  N  G  Y  E  F  Q  E  S  *  Y  G  G  L  P  P  C  N  R  *  G  E  L  C  C  H  E  G  M  V  H  H  E  Q  F  P  R  S  D  C  C  C  T  K  D  *  R  V  *  L  V  K  C  F  V  C  T  C  S  K  T  T  S  R  L  *  H  P  E  L  L  L  F  W  Q  P  *  *  Q  P  Y  S  D  Q  I  Q  K  P  *  I  S  I  N  A  *  P  S  E  I  L  Y  S  R  S  F  S  C  T  *  E  G  C  V  S  R  *  *  C  C  S  A  E  G  S  F  S  P  I  H  H  R  F  E  W  K  C  K  W  C  S  G  D  L  Y  G  D  I  P  *  I  S  Q  V  P  K  L  F  S  P  A  Y  S  S  T  F  *  S  *  C  M  W  V  G  L  R  D  E  C  F  R  F  G  *  V  A  Q  K  E  C  Y  W  H  I  P  L  L  A  G  Q  E  R  G  P  H  I  V  E  A  W  Y  F  T  T  W  I  A  D  L  L  W  I  D  R  G  F  E  S  F  M  A  C  L  R  F  W  L  H  E  C  R  L  Q  I  D  R  K  G  S  C  A  A  L  Q  W  *  L  K  T  L  V  E  D  W  Y  *  E  V  Q  A  T  L  G  Q  I  C  *  L  *  S  S  F  I  T  T  M  Q  F  S  L  S  C  L  *  L  I  *  S  Y  I  V  L  T  E  V  V  I  L  G  I  C  N  G  F  C  E  I  K  I  L  S  S  L  V  L  I  P  I  C  C  S  I  A  F  E  T  N  I  K  A  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44611" stop="44826"/>
                    <exon start="51706" stop="53157"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1665</number_coding_nucleotides>
                  <number_encoded_amino_acids>555</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKSLYRRFTRNYLYSVVAGKMRRRNSDFRRPVRRRFSNVFWLTLCGLVVLLLIILLSRTTRDSSSRLVYTKRPYRHDRIADGLNITEEMLRPESMTRQINDQISLAKAILVIAKESNNLQFAWELSAQIRNSQMLLSNAASRRSPLTNGESESAIRDMALLLYQAQQLHYDSATMFMRLKGKIQSLEEQANSFSEKSSKYGQIAAEEVPKSLYCLGVRLTAEWFRSSNLQKQFKEEKQAAAKLVDTGLYHFCVFSDNILATSVVVNSTAMNSKNPDMVVFHLVTDEVNYAAMKAWFTMNSFRGVTVVVQKIEEFSWLNASYVPVLKQLQDSDTQNYYFSGNHDNSRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVVQKDLSALFTTDLNGNVNGAVETCMETFHRYHKYLNYSHPLIRQHFDPDACGWAFGMNVFDLVEWRKRNVTGIYHYWQDKNVDRTLWKLGTLPPGLLTFYGLTEALNPSWHVLGFGYTNVDSKLIEKGAVLHFNGNSKPWLKIGIEKYKPLWDKYVDYSHPLLQQCNFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44448" e_stop="44826"/>
            <exon e_start="51706" e_stop="52108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.879"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="44448" e_stop="44826" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44827" i_stop="51705" i_length="6879"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="51706" e_stop="52108" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44448" stop="44826"/>
              <exon start="51706" stop="52052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44505" stop="44826"/>
              <exon start="51706" stop="51932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44533" stop="44826"/>
              <exon start="51706" stop="52107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44533" stop="44826"/>
              <exon start="51706" stop="52041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44538" stop="44826"/>
              <exon start="51706" stop="51902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44548" stop="44826"/>
              <exon start="51706" stop="51917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44586" stop="44826"/>
              <exon start="51706" stop="52108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44586" stop="44826"/>
              <exon start="51706" stop="52071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44601" stop="44826"/>
              <exon start="51706" stop="52025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAATTTGACATGCAGCATTCTGCCCTGTTGTAGATCTGAATATCAATCTCCATTACAGTGCCACTCATAACTCCGAAAAAACTCGCTTCAATAAAACCCAAATCTTCAATTCAACCAAATTCTTCGATTTCCCACTTTTGGGTGCCACAATATACTGTGACTGAAGAAGTCACTGTACCGCAGATTTACTCGAAATTATTTGTATTCAGTAGTCGCCGGAAAAATGAGACGGAGGAACTCGGATTTCCGGCGGCCGGTGAGGCGGCGATTCTCCAATGTTTTTTGGTTAACTTTGTGTGGATTGGTCGTATTGCTGCTCATTATTTTGCTCAGCAGAACAACTCGCGATTCATCGTCTAGATTGGTTTATACAAAG : AGACCTTATAGGCATGACAGAATTGCGGATGGTCTCAACATTACTGAAGAAATGCTGAGGCCTGAATCGATGACGAGACAAATTAATGATCAGATTTCTCTTGCAAAAGCAATTCTTGTAATTGCAAAAGAAAGCAACAACCTTCAATTTGCATGGGAACTAAGTGCTCAAATCCGCAACTCACAGATGCTTCTTTCTAATGCTGCTTCAAGAAGAAGCCCCTTGACAAACGGAGAATCAGAAAGTGCAATTCGAGATATGGCACTTCTACTCTACCAAGCCCAGCAACTTCACTATGACAGTGCAACCATGTTTATGAGACTGAAAGGTAAAATCCAAAGCCTTGAAGAACAGGCAAATTCCTTCAGTGAGAAGAGTTCAAAATATGGACAAATTGCTGCTG</gDNA_template>
            <first_frame> R  K  F  D  M  Q  H  S  A  L  L  *  I  *  I  S  I  S  I  T  V  P  L  I  T  P  K  K  L  A  S  I  K  P  K  S  S  I  Q  P  N  S  S  I  S  H  F  W  V  P  Q  Y  T  V  T  E  E  V  T  V  P  Q  I  Y  S  K  L  F  V  F  S  S  R  R  K  N  E  T  E  E  L  G  F  P  A  A  G  E  A  A  I  L  Q  C  F  L  V  N  F  V  W  I  G  R  I  A  A  H  Y  F  A  Q  Q  N  N  S  R  F  I  V  *  I  G  L  Y  K   : E  T  L  *  A  *  Q  N  C  G  W  S  Q  H  Y  *  R  N  A  E  A  *  I  D  D  E  T  N  *  *  S  D  F  S  C  K  S  N  S  C  N  C  K  R  K  Q  Q  P  S  I  C  M  G  T  K  C  S  N  P  Q  L  T  D  A  S  F  *  C  C  F  K  K  K  P  L  D  K  R  R  I  R  K  C  N  S  R  Y  G  T  S  T  L  P  S  P  A  T  S  L  *  Q  C  N  H  V  Y  E  T  E  R  *  N  P  K  P  *  R  T  G  K  F  L  Q  *  E  E  F  K  I  W  T  N  C  C   </first_frame>
            <second_frame>  E  N  L  T  C  S  I  L  P  C  C  R  S  E  Y  Q  S  P  L  Q  C  H  S  *  L  R  K  N  S  L  Q  *  N  P  N  L  Q  F  N  Q  I  L  R  F  P  T  F  G  C  H  N  I  L  *  L  K  K  S  L  Y  R  R  F  T  R  N  Y  L  Y  S  V  V  A  G  K  M  R  R  R  N  S  D  F  R  R  P  V  R  R  R  F  S  N  V  F  W  L  T  L  C  G  L  V  V  L  L  L  I  I  L  L  S  R  T  T  R  D  S  S  S  R  L  V  Y  T  K  :  R  P  Y  R  H  D  R  I  A  D  G  L  N  I  T  E  E  M  L  R  P  E  S  M  T  R  Q  I  N  D  Q  I  S  L  A  K  A  I  L  V  I  A  K  E  S  N  N  L  Q  F  A  W  E  L  S  A  Q  I  R  N  S  Q  M  L  L  S  N  A  A  S  R  R  S  P  L  T  N  G  E  S  E  S  A  I  R  D  M  A  L  L  L  Y  Q  A  Q  Q  L  H  Y  D  S  A  T  M  F  M  R  L  K  G  K  I  Q  S  L  E  E  Q  A  N  S  F  S  E  K  S  S  K  Y  G  Q  I  A  A  </second_frame>
            <third_frame>   K  I  *  H  A  A  F  C  P  V  V  D  L  N  I  N  L  H  Y  S  A  T  H  N  S  E  K  T  R  F  N  K  T  Q  I  F  N  S  T  K  F  F  D  F  P  L  L  G  A  T  I  Y  C  D  *  R  S  H  C  T  A  D  L  L  E  I  I  C  I  Q  *  S  P  E  K  *  D  G  G  T  R  I  S  G  G  R  *  G  G  D  S  P  M  F  F  G  *  L  C  V  D  W  S  Y  C  C  S  L  F  C  S  A  E  Q  L  A  I  H  R  L  D  W  F  I  Q  R :   D  L  I  G  M  T  E  L  R  M  V  S  T  L  L  K  K  C  *  G  L  N  R  *  R  D  K  L  M  I  R  F  L  L  Q  K  Q  F  L  *  L  Q  K  K  A  T  T  F  N  L  H  G  N  *  V  L  K  S  A  T  H  R  C  F  F  L  M  L  L  Q  E  E  A  P  *  Q  T  E  N  Q  K  V  Q  F  E  I  W  H  F  Y  S  T  K  P  S  N  F  T  M  T  V  Q  P  C  L  *  D  *  K  V  K  S  K  A  L  K  N  R  Q  I  P  S  V  R  R  V  Q  N  M  D  K  L  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44611" stop="44826"/>
                    <exon start="51706" stop="52107"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKSLYRRFTRNYLYSVVAGKMRRRNSDFRRPVRRRFSNVFWLTLCGLVVLLLIILLSRTTRDSSSRLVYTKRPYRHDRIADGLNITEEMLRPESMTRQINDQISLAKAILVIAKESNNLQFAWELSAQIRNSQMLLSNAASRRSPLTNGESESAIRDMALLLYQAQQLHYDSATMFMRLKGKIQSLEEQANSFSEKSSKYGQIAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="53333" PGL_stop="52760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53333" e_stop="52760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="53333" e_stop="52760" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53333" stop="52760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAAATTTTATGTAATAAGATACTGGTGCCTTGATGTTTGTTTCAAAAGCTATACTACAACAAATTGGAATAAGCACAAGAGATGACAATATCTTAATCTCACAGAACCCATTACAGATCCCCAAAATTACCACCTCTGTGAGAACTATATATGATTAAATTAATTAAAGACAACTTAGTGAAAATTGCATTGTTGTAATAAAGGATGACTATAATCAACATATTTGTCCCAGAGTGGCTTGTACTTCTCAATACCAATCTTCAACCAGGGTTTTGAGTTACCATTGAAGTGCAGCACAGCTCCCTTTTCTATCAATTTGGAGTCGACATTCGTGTAACCAAAACCTAAGACATGCCATGAAGGATTCAAAGCCTCTGTCAATCCATAGAAGGTCAGCAATCCAGGTGGTAAAGTACCAAGCTTCCACAATGTGCGGTCCACGTTCTTGTCCTGCCAGTAATGGTATATGCCAGTAACATTCCTTTTGCGCCACTCAACCAAATCGAAAACATTCATCCCGAAGGCCCACCCACATGCATCAGGATCAAAATGTTGACGAATAAGCGGGTGAG</gDNA_template>
            <first_frame> *  K  F  Y  V  I  R  Y  W  C  L  D  V  C  F  K  S  Y  T  T  T  N  W  N  K  H  K  R  *  Q  Y  L  N  L  T  E  P  I  T  D  P  Q  N  Y  H  L  C  E  N  Y  I  *  L  N  *  L  K  T  T  *  *  K  L  H  C  C  N  K  G  *  L  *  S  T  Y  L  S  Q  S  G  L  Y  F  S  I  P  I  F  N  Q  G  F  E  L  P  L  K  C  S  T  A  P  F  S  I  N  L  E  S  T  F  V  *  P  K  P  K  T  C  H  E  G  F  K  A  S  V  N  P  *  K  V  S  N  P  G  G  K  V  P  S  F  H  N  V  R  S  T  F  L  S  C  Q  *  W  Y  M  P  V  T  F  L  L  R  H  S  T  K  S  K  T  F  I  P  K  A  H  P  H  A  S  G  S  K  C  *  R  I  S  G  *  </first_frame>
            <second_frame>  E  N  F  M  *  *  D  T  G  A  L  M  F  V  S  K  A  I  L  Q  Q  I  G  I  S  T  R  D  D  N  I  L  I  S  Q  N  P  L  Q  I  P  K  I  T  T  S  V  R  T  I  Y  D  *  I  N  *  R  Q  L  S  E  N  C  I  V  V  I  K  D  D  Y  N  Q  H  I  C  P  R  V  A  C  T  S  Q  Y  Q  S  S  T  R  V  L  S  Y  H  *  S  A  A  Q  L  P  F  L  S  I  W  S  R  H  S  C  N  Q  N  L  R  H  A  M  K  D  S  K  P  L  S  I  H  R  R  S  A  I  Q  V  V  K  Y  Q  A  S  T  M  C  G  P  R  S  C  P  A  S  N  G  I  C  Q  *  H  S  F  C  A  T  Q  P  N  R  K  H  S  S  R  R  P  T  H  M  H  Q  D  Q  N  V  D  E  *  A  G  E </second_frame>
            <third_frame>   K  I  L  C  N  K  I  L  V  P  *  C  L  F  Q  K  L  Y  Y  N  K  L  E  *  A  Q  E  M  T  I  S  *  S  H  R  T  H  Y  R  S  P  K  L  P  P  L  *  E  L  Y  M  I  K  L  I  K  D  N  L  V  K  I  A  L  L  *  *  R  M  T  I  I  N  I  F  V  P  E  W  L  V  L  L  N  T  N  L  Q  P  G  F  *  V  T  I  E  V  Q  H  S  S  L  F  Y  Q  F  G  V  D  I  R  V  T  K  T  *  D  M  P  *  R  I  Q  S  L  C  Q  S  I  E  G  Q  Q  S  R  W  *  S  T  K  L  P  Q  C  A  V  H  V  L  V  L  P  V  M  V  Y  A  S  N  I  P  F  A  P  L  N  Q  I  E  N  I  H  P  E  G  P  P  T  C  I  R  I  K  M  L  T  N  K  R  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0213A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="53670" PGL_stop="54925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53670" e_stop="53738"/>
            <exon e_start="54027" e_stop="54925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53670" e_stop="53738" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="53739" i_stop="54026" i_length="288"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="54027" e_stop="54925" e_length="899"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53670" stop="53738"/>
              <exon start="54027" stop="54384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54072" stop="54641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54361" stop="54925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273148" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGATTAGGGTTTTGCTTGCCTCTTCTTCACTACTCTCATATCTCATTCTTCTTCCTCAGCTTTCAAG : AAGATAAATTGGGAACACCATTATGGTTGGTAGACGTCAGTTACCAAAAGATTTATTAGTGGAGGTTCTATTATGGTTGCCTGTGGAATCACTTGTGCGTTTCAAATGTGTCTCCAAACATTGGTATGCTCTCATCACAAGTCCAAGTTTTGTAGAAATGCATTTCCGTCACAAGCGTAATCATGTCCATCTCTTCATTTGTAACTTAACACTTACGAGGGAATCACATTCCATTGATTTTTCCTTGCTCCCTACCAATATAGTTCAAGGTGTTGTCCCTGAACAAAAAACTGTCCATCAGCTTCAGTGTACCTCTGATTTCTGGTCCATTATTGGCCCAGTTGATGGCCTATTCTTGGTGGAAAATGCATCCTTTTTTGATGAAGGCAATGCTCACTTGGCTTTGTGGAATCCTGCCACCAGGGAGGTCTGGCCTCTGCCTCCTGCGTCCTTTGAGTCTCAGCCATTCAGAGATCACGATGATCAGTTTGCATTGGGGTTTGACCCGTTGACTCAAGATTATAAGGTTCTGTATGTACGAACATTTTGGGATGAAGAGGGACTGGGCATTTCCCCCGATTTCTTTGTCAGCGTCTATTCCTTACACAACAACTCTTGGAAGGACCTGAGACCTGATTTCCCTGACTGTTGTAACTTACACAAGTCCATTGGCGCTACACATCTCAACGGGGTATATTATTGGATCTGTGGGCTTCGAGACAATATCTTCCGCATGTGCACGTTTGATATGGGCAGCGAACAATTTGGGGAGATGCAAGGCCCGTATATTCCATACACACAATGGGGAAAGCTTATGTTGCGTGGTGACTCGCTAGCTATCTTAGTTGGTGGTTTTGGTCGACAAATGACATCCGTATATGATGTGTGGGAAATGAATC</gDNA_template>
            <first_frame> I  D  *  G  F  A  C  L  F  F  T  T  L  I  S  H  S  S  S  S  A  F  K  :  K  I  N  W  E  H  H  Y  G  W  *  T  S  V  T  K  R  F  I  S  G  G  S  I  M  V  A  C  G  I  T  C  A  F  Q  M  C  L  Q  T  L  V  C  S  H  H  K  S  K  F  C  R  N  A  F  P  S  Q  A  *  S  C  P  S  L  H  L  *  L  N  T  Y  E  G  I  T  F  H  *  F  F  L  A  P  Y  Q  Y  S  S  R  C  C  P  *  T  K  N  C  P  S  A  S  V  Y  L  *  F  L  V  H  Y  W  P  S  *  W  P  I  L  G  G  K  C  I  L  F  *  *  R  Q  C  S  L  G  F  V  E  S  C  H  Q  G  G  L  A  S  A  S  C  V  L  *  V  S  A  I  Q  R  S  R  *  S  V  C  I  G  V  *  P  V  D  S  R  L  *  G  S  V  C  T  N  I  L  G  *  R  G  T  G  H  F  P  R  F  L  C  Q  R  L  F  L  T  Q  Q  L  L  E  G  P  E  T  *  F  P  *  L  L  *  L  T  Q  V  H  W  R  Y  T  S  Q  R  G  I  L  L  D  L  W  A  S  R  Q  Y  L  P  H  V  H  V  *  Y  G  Q  R  T  I  W  G  D  A  R  P  V  Y  S  I  H  T  M  G  K  A  Y  V  A  W  *  L  A  S  Y  L  S  W  W  F  W  S  T  N  D  I  R  I  *  C  V  G  N  E   </first_frame>
            <second_frame>  L  I  R  V  L  L  A  S  S  S  L  L  S  Y  L  I  L  L  P  Q  L  S  R :   R  *  I  G  N  T  I  M  V  G  R  R  Q  L  P  K  D  L  L  V  E  V  L  L  W  L  P  V  E  S  L  V  R  F  K  C  V  S  K  H  W  Y  A  L  I  T  S  P  S  F  V  E  M  H  F  R  H  K  R  N  H  V  H  L  F  I  C  N  L  T  L  T  R  E  S  H  S  I  D  F  S  L  L  P  T  N  I  V  Q  G  V  V  P  E  Q  K  T  V  H  Q  L  Q  C  T  S  D  F  W  S  I  I  G  P  V  D  G  L  F  L  V  E  N  A  S  F  F  D  E  G  N  A  H  L  A  L  W  N  P  A  T  R  E  V  W  P  L  P  P  A  S  F  E  S  Q  P  F  R  D  H  D  D  Q  F  A  L  G  F  D  P  L  T  Q  D  Y  K  V  L  Y  V  R  T  F  W  D  E  E  G  L  G  I  S  P  D  F  F  V  S  V  Y  S  L  H  N  N  S  W  K  D  L  R  P  D  F  P  D  C  C  N  L  H  K  S  I  G  A  T  H  L  N  G  V  Y  Y  W  I  C  G  L  R  D  N  I  F  R  M  C  T  F  D  M  G  S  E  Q  F  G  E  M  Q  G  P  Y  I  P  Y  T  Q  W  G  K  L  M  L  R  G  D  S  L  A  I  L  V  G  G  F  G  R  Q  M  T  S  V  Y  D  V  W  E  M  N  </second_frame>
            <third_frame>   *  L  G  F  C  L  P  L  L  H  Y  S  H  I  S  F  F  F  L  S  F  Q   : E  D  K  L  G  T  P  L  W  L  V  D  V  S  Y  Q  K  I  Y  *  W  R  F  Y  Y  G  C  L  W  N  H  L  C  V  S  N  V  S  P  N  I  G  M  L  S  S  Q  V  Q  V  L  *  K  C  I  S  V  T  S  V  I  M  S  I  S  S  F  V  T  *  H  L  R  G  N  H  I  P  L  I  F  P  C  S  L  P  I  *  F  K  V  L  S  L  N  K  K  L  S  I  S  F  S  V  P  L  I  S  G  P  L  L  A  Q  L  M  A  Y  S  W  W  K  M  H  P  F  L  M  K  A  M  L  T  W  L  C  G  I  L  P  P  G  R  S  G  L  C  L  L  R  P  L  S  L  S  H  S  E  I  T  M  I  S  L  H  W  G  L  T  R  *  L  K  I  I  R  F  C  M  Y  E  H  F  G  M  K  R  D  W  A  F  P  P  I  S  L  S  A  S  I  P  Y  T  T  T  L  G  R  T  *  D  L  I  S  L  T  V  V  T  Y  T  S  P  L  A  L  H  I  S  T  G  Y  I  I  G  S  V  G  F  E  T  I  S  S  A  C  A  R  L  I  W  A  A  N  N  L  G  R  C  K  A  R  I  F  H  T  H  N  G  E  S  L  C  C  V  V  T  R  *  L  S  *  L  V  V  L  V  D  K  *  H  P  Y  M  M  C  G  K  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54034" stop="54924"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGNTIMVGRRQLPKDLLVEVLLWLPVESLVRFKCVSKHWYALITSPSFVEMHFRHKRNHVHLFICNLTLTRESHSIDFSLLPTNIVQGVVPEQKTVHQLQCTSDFWSIIGPVDGLFLVENASFFDEGNAHLALWNPATREVWPLPPASFESQPFRDHDDQFALGFDPLTQDYKVLYVRTFWDEEGLGISPDFFVSVYSLHNNSWKDLRPDFPDCCNLHKSIGATHLNGVYYWICGLRDNIFRMCTFDMGSEQFGEMQGPYIPYTQWGKLMLRGDSLAILVGGFGRQMTSVYDVWEMN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="73555" PGL_stop="76029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73555" e_stop="73578"/>
            <exon e_start="74704" e_stop="74743"/>
            <exon e_start="75011" e_stop="76029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.667"/>
          <exon-intron don_prob="0.999" acc_prob="0.799" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="73555" e_stop="73578" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73579" i_stop="74703" i_length="1125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74704" e_stop="74743" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.799">
            <gDNA_intron_boundary i_start="74744" i_stop="75010" i_length="267"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="75011" e_stop="76029" e_length="1019"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73555" stop="73578"/>
              <exon start="74704" stop="74743"/>
              <exon start="75011" stop="75318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74713" stop="74743"/>
              <exon start="75011" stop="75540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75396" stop="76029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75396" stop="75635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75405" stop="75819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75442" stop="76008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75442" stop="75927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75442" stop="75860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAGTGACTTAATTTGTCACCAA : GTCCTGATCTTGGCCTTGCATTATAATACTCCCTTCAACG : TAATATATTGGTGAGCAACGGACCACCAGTATGGATTGTTATTGTCCTTTACCAGAAGATATTGTGGTTGATATTTTATTGAGGTTGCCAGTGGAACCACTCTTGCGTTTCAAATGTGTGTGCAAGCACTGGTATGCTCTCATCAAAAGTGAGAGTTTCATAGAGAAGCATTTTCATCACAAGAACAATCGTTCCCGTCTCCTCATTTGCAACTTGAAACTTGAAGCGGAAGAACACATCGTCTTTCAGTCTGCTGTAGTCTCCTTGCTACCTGAAAAAATAGTTTCGGGTGTGACCCCTGAAGAAAAAATTCTCCTTTATCTTCCAAGGGTCGATTATTTCAAAATTCTTGCTGGCCCAGTTAATGGCTTATTCTTAGTGCAGGAAATCTTTTTTGAACACGGTGAACGCTTGAGTTTGTGGAATCCTGCCACCAGAGAGTTCCGACCTCTGCCTCCTGCGCCTTTTGTGACTGAGCACTCCTTATGGAACTATGATCATGAATTTGGATTGGGGTTTGACCAACTGACTCAGCATTATAAGGTTGTTTGGATTCGAGTATTCTTTGAGAACCGGGAACAAGGACAGGGACAGAGACGGCGCTTTTACCTTCATAATTTTGTCTGTGTCTATTCCTCATGCGATAACTCATGGAAGAGCCTACAATTCCCTTCCAGTTTTACCTTAGGTTTTCCCTATTCCGTCACATATCTCAACGGGATTTATTATTGGATTTGTAGGAGCGACAATAATGATATATGCAAGATTCAGTCATTTGCCATGGGCAGCCAACAGTTGGGGGAGATGCAAGGCCCAGATATTCCAGGTGAACACTGGGTGAGGCTGACACTGCGTGGAGACTCTCTTGCAATGTTAGTCAGTGATAAGTGTATGACATCCATATACGAAATGAAACAAGAGGGAAGTTGGTCCAAGGTGTTAACTGTTCAACCCCGTATAGATGCTGCTCATTTGCCTAAAGGTATTTGGGAGAATGATAAGATTGTTTTTTACCTCAC</gDNA_template>
            <first_frame> I  S  D  L  I  C  H  Q  :  V  L  I  L  A  L  H  Y  N  T  P  F  N   : V  I  Y  W  *  A  T  D  H  Q  Y  G  L  L  L  S  F  T  R  R  Y  C  G  *  Y  F  I  E  V  A  S  G  T  T  L  A  F  Q  M  C  V  Q  A  L  V  C  S  H  Q  K  *  E  F  H  R  E  A  F  S  S  Q  E  Q  S  F  P  S  P  H  L  Q  L  E  T  *  S  G  R  T  H  R  L  S  V  C  C  S  L  L  A  T  *  K  N  S  F  G  C  D  P  *  R  K  N  S  P  L  S  S  K  G  R  L  F  Q  N  S  C  W  P  S  *  W  L  I  L  S  A  G  N  L  F  *  T  R  *  T  L  E  F  V  E  S  C  H  Q  R  V  P  T  S  A  S  C  A  F  C  D  *  A  L  L  M  E  L  *  S  *  I  W  I  G  V  *  P  T  D  S  A  L  *  G  C  L  D  S  S  I  L  *  E  P  G  T  R  T  G  T  E  T  A  L  L  P  S  *  F  C  L  C  L  F  L  M  R  *  L  M  E  E  P  T  I  P  F  Q  F  Y  L  R  F  S  L  F  R  H  I  S  Q  R  D  L  L  L  D  L  *  E  R  Q  *  *  Y  M  Q  D  S  V  I  C  H  G  Q  P  T  V  G  G  D  A  R  P  R  Y  S  R  *  T  L  G  E  A  D  T  A  W  R  L  S  C  N  V  S  Q  *  *  V  Y  D  I  H  I  R  N  E  T  R  G  K  L  V  Q  G  V  N  C  S  T  P  Y  R  C  C  S  F  A  *  R  Y  L  G  E  *  *  D  C  F  L  P  H </first_frame>
            <second_frame>  *  V  T  *  F  V  T  K :   S  *  S  W  P  C  I  I  I  L  P  S  T  :  *  Y  I  G  E  Q  R  T  T  S  M  D  C  Y  C  P  L  P  E  D  I  V  V  D  I  L  L  R  L  P  V  E  P  L  L  R  F  K  C  V  C  K  H  W  Y  A  L  I  K  S  E  S  F  I  E  K  H  F  H  H  K  N  N  R  S  R  L  L  I  C  N  L  K  L  E  A  E  E  H  I  V  F  Q  S  A  V  V  S  L  L  P  E  K  I  V  S  G  V  T  P  E  E  K  I  L  L  Y  L  P  R  V  D  Y  F  K  I  L  A  G  P  V  N  G  L  F  L  V  Q  E  I  F  F  E  H  G  E  R  L  S  L  W  N  P  A  T  R  E  F  R  P  L  P  P  A  P  F  V  T  E  H  S  L  W  N  Y  D  H  E  F  G  L  G  F  D  Q  L  T  Q  H  Y  K  V  V  W  I  R  V  F  F  E  N  R  E  Q  G  Q  G  Q  R  R  R  F  Y  L  H  N  F  V  C  V  Y  S  S  C  D  N  S  W  K  S  L  Q  F  P  S  S  F  T  L  G  F  P  Y  S  V  T  Y  L  N  G  I  Y  Y  W  I  C  R  S  D  N  N  D  I  C  K  I  Q  S  F  A  M  G  S  Q  Q  L  G  E  M  Q  G  P  D  I  P  G  E  H  W  V  R  L  T  L  R  G  D  S  L  A  M  L  V  S  D  K  C  M  T  S  I  Y  E  M  K  Q  E  G  S  W  S  K  V  L  T  V  Q  P  R  I  D  A  A  H  L  P  K  G  I  W  E  N  D  K  I  V  F  Y  L   </second_frame>
            <third_frame>   K  *  L  N  L  S  P   : S  P  D  L  G  L  A  L  *  Y  S  L  Q  R :   N  I  L  V  S  N  G  P  P  V  W  I  V  I  V  L  Y  Q  K  I  L  W  L  I  F  Y  *  G  C  Q  W  N  H  S  C  V  S  N  V  C  A  S  T  G  M  L  S  S  K  V  R  V  S  *  R  S  I  F  I  T  R  T  I  V  P  V  S  S  F  A  T  *  N  L  K  R  K  N  T  S  S  F  S  L  L  *  S  P  C  Y  L  K  K  *  F  R  V  *  P  L  K  K  K  F  S  F  I  F  Q  G  S  I  I  S  K  F  L  L  A  Q  L  M  A  Y  S  *  C  R  K  S  F  L  N  T  V  N  A  *  V  C  G  I  L  P  P  E  S  S  D  L  C  L  L  R  L  L  *  L  S  T  P  Y  G  T  M  I  M  N  L  D  W  G  L  T  N  *  L  S  I  I  R  L  F  G  F  E  Y  S  L  R  T  G  N  K  D  R  D  R  D  G  A  F  T  F  I  I  L  S  V  S  I  P  H  A  I  T  H  G  R  A  Y  N  S  L  P  V  L  P  *  V  F  P  I  P  S  H  I  S  T  G  F  I  I  G  F  V  G  A  T  I  M  I  Y  A  R  F  S  H  L  P  W  A  A  N  S  W  G  R  C  K  A  Q  I  F  Q  V  N  T  G  *  G  *  H  C  V  E  T  L  L  Q  C  *  S  V  I  S  V  *  H  P  Y  T  K  *  N  K  R  E  V  G  P  R  C  *  L  F  N  P  V  *  M  L  L  I  C  L  K  V  F  G  R  M  I  R  L  F  F  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75014" stop="76027"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIGEQRTTSMDCYCPLPEDIVVDILLRLPVEPLLRFKCVCKHWYALIKSESFIEKHFHHKNNRSRLLICNLKLEAEEHIVFQSAVVSLLPEKIVSGVTPEEKILLYLPRVDYFKILAGPVNGLFLVQEIFFEHGERLSLWNPATREFRPLPPAPFVTEHSLWNYDHEFGLGFDQLTQHYKVVWIRVFFENREQGQGQRRRFYLHNFVCVYSSCDNSWKSLQFPSSFTLGFPYSVTYLNGIYYWICRSDNNDICKIQSFAMGSQQLGEMQGPDIPGEHWVRLTLRGDSLAMLVSDKCMTSIYEMKQEGSWSKVLTVQPRIDAAHLPKGIWENDKIVFYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="105241" PGL_stop="105864"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105241" e_stop="105864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="105241" e_stop="105864" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105241" stop="105864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTCCCTCCCAGTTCTATCTTATCTGCACCCCTTGATGCCACTTATCTCAACGGAGTTTATTATTGGCTTTCAAGGGGCCTCGATGGCATCTTCATGATTCTCTCGTTTGACATGGTCTGTGAACAGTTTGGGGAGATGCAAGTCCCAGATATTCCAACTAAACATTGGGGGACGCTTACATTGCATGGCGGCTCACTTGTAATGTTAACAAGTGGCCAACCTATGACATCCATATATGATGTGTGGGTAATGAAACAAGAGGGAAATTGGTCCAAAGTTCATACTATTCAACCTCATATAGATGCTCATTGGCCTATCAACATCTGGGATAACAATAAGATGGTTTTCGAGAACATGGAAACTTCACAGCTAGTGCTATATGACCCTAAAACAAGACGTGTTACAGATCTTGGATTTCAGCTGGACCCTAACATTGATGGCTGTTGGGTTTTCAATTACAAGGAGAGCTTAGTTCCAATAAAGAGAGGAAGCAACACTCAGGGTGAGGATAATGCAGTCAAGCAAATTGAACACTACTTCAATACTCTACCAGCGGATGAGGCCTCATCTTAGAGATTATACGTACAAAATATTTCTAGTGATAAAAATGGTTAAACAGA</gDNA_template>
            <first_frame> Q  I  P  S  Q  F  Y  L  I  C  T  P  *  C  H  L  S  Q  R  S  L  L  L  A  F  K  G  P  R  W  H  L  H  D  S  L  V  *  H  G  L  *  T  V  W  G  D  A  S  P  R  Y  S  N  *  T  L  G  D  A  Y  I  A  W  R  L  T  C  N  V  N  K  W  P  T  Y  D  I  H  I  *  C  V  G  N  E  T  R  G  K  L  V  Q  S  S  Y  Y  S  T  S  Y  R  C  S  L  A  Y  Q  H  L  G  *  Q  *  D  G  F  R  E  H  G  N  F  T  A  S  A  I  *  P  *  N  K  T  C  Y  R  S  W  I  S  A  G  P  *  H  *  W  L  L  G  F  Q  L  Q  G  E  L  S  S  N  K  E  R  K  Q  H  S  G  *  G  *  C  S  Q  A  N  *  T  L  L  Q  Y  S  T  S  G  *  G  L  I  L  E  I  I  R  T  K  Y  F  *  *  *  K  W  L  N  R </first_frame>
            <second_frame>  K  F  P  P  S  S  I  L  S  A  P  L  D  A  T  Y  L  N  G  V  Y  Y  W  L  S  R  G  L  D  G  I  F  M  I  L  S  F  D  M  V  C  E  Q  F  G  E  M  Q  V  P  D  I  P  T  K  H  W  G  T  L  T  L  H  G  G  S  L  V  M  L  T  S  G  Q  P  M  T  S  I  Y  D  V  W  V  M  K  Q  E  G  N  W  S  K  V  H  T  I  Q  P  H  I  D  A  H  W  P  I  N  I  W  D  N  N  K  M  V  F  E  N  M  E  T  S  Q  L  V  L  Y  D  P  K  T  R  R  V  T  D  L  G  F  Q  L  D  P  N  I  D  G  C  W  V  F  N  Y  K  E  S  L  V  P  I  K  R  G  S  N  T  Q  G  E  D  N  A  V  K  Q  I  E  H  Y  F  N  T  L  P  A  D  E  A  S  S  *  R  L  Y  V  Q  N  I  S  S  D  K  N  G  *  T   </second_frame>
            <third_frame>   N  S  L  P  V  L  S  Y  L  H  P  L  M  P  L  I  S  T  E  F  I  I  G  F  Q  G  A  S  M  A  S  S  *  F  S  R  L  T  W  S  V  N  S  L  G  R  C  K  S  Q  I  F  Q  L  N  I  G  G  R  L  H  C  M  A  A  H  L  *  C  *  Q  V  A  N  L  *  H  P  Y  M  M  C  G  *  *  N  K  R  E  I  G  P  K  F  I  L  F  N  L  I  *  M  L  I  G  L  S  T  S  G  I  T  I  R  W  F  S  R  T  W  K  L  H  S  *  C  Y  M  T  L  K  Q  D  V  L  Q  I  L  D  F  S  W  T  L  T  L  M  A  V  G  F  S  I  T  R  R  A  *  F  Q  *  R  E  E  A  T  L  R  V  R  I  M  Q  S  S  K  L  N  T  T  S  I  L  Y  Q  R  M  R  P  H  L  R  D  Y  T  Y  K  I  F  L  V  I  K  M  V  K  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0213A03.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105242" stop="105817"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFPPSSILSAPLDATYLNGVYYWLSRGLDGIFMILSFDMVCEQFGEMQVPDIPTKHWGTLTLHGGSLVMLTSGQPMTSIYDVWVMKQEGNWSKVHTIQPHIDAHWPINIWDNNKMVFENMETSQLVLYDPKTRRVTDLGFQLDPNIDGCWVFNYKESLVPIKRGSNTQGEDNAVKQIEHYFNTLPADEASS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 166 chains have been computed
$ 
$ memory statistics:
$ 225408 bytes spliced alignments in total
$ 92 spliced alignments have been stored
$ 2450 bytes was the average size of a spliced alignment
$ 20480 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1861 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 187 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:37:20
-->
