<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:49:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="+" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="5150" stop="6168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5450" g_stop="5872" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5450" e_stop="5872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAAC-AAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGGCCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTAGGGCT-GAATTTTGACTGCGAAAATCTGCTCTTTTTCTCTCTTTTTGACTGCT-AAAAACTCTCTGTGTATTTG</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTCTTTTAG-CTGCTGAAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556553" ref_strand="+" ref_description="SGN-E556553 [cTSD-3-N20]">
      <seq>caattatgaattttaagatgaacaaagaactttggatgcatacccaaaaaaaagctgaatacatagtggttagtcttttgctggtacaagatgccagggtttctcttcttgctgatatctgtgttaaactgtcaacaacattgttggtacttgtttgagaggactagacgcctaaaggattccaactaatttctgcaaatatatttgtttgctatactttgattttaattctcttccgctctgtacataccatttggttttgaatgtcacttggaacaaaccatctattatagtttgtacagcacctaagtgcccaaacatttggatctgttctattcttctagtgttttttgatattgattttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="40926" stop="38355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40612" g_stop="40563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="66" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40562" i_stop="38971" i_length="1592">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.257" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38970" g_stop="38653" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="384" r_length="318" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E556553" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40612" e_stop="40563"/>
          <exon e_start="38970" e_stop="38653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAGGTGACCCCTTAAACTTGTTTTTTTTGCTCTCCATTTTTACACTTAAGCCAAGTAAAGTACCTACTGAGCACTTGAAGTGAAGACAAATTTCTTACTTGGTACAGTGTGACACCACTTATGAGAGTGTGCAAATTCATTTTTCAATTTATTTATTTTTTTGACAAGGCATTTTTCAAATTTTTTCTTCAATCTACTAATTTTCCACTGTATCTCGACCGCTGTAGCCGCTGCAAATGGCCTCCAATCCACCGTCACTATGCCACATCCACCGCCATGTAAACTACCTCTATTACTGTCCCACCCAGCTCCTCCTCCACTTTGCGGCATTGGCACCACCGCAAAGCCCAAGCCCAAGCCCAAACTGAAACCGAATGAAAGCCCACACCTTCACCATTTAAGTTCATGTCCATAAGAAACCCATGCAAGTTCTTTCTCCAGTAACCCATGAAATTCTCAAAATTTTAGAACAATTTCAGAGGCAAAAGATAGATTATCTAGGCCCAAGGACCTAATGGGCGTCTATAGTCATCGACGGAGGACAATTGTAAGCTGTGATAGAGGTGGTGTTGTGAGGGAATGAACCAGTGGACATGGCCATTAAAGCACTTTCCTAGTGAGGGACTACAGTGGCGACACAATGCTTGTTGAGTGCCCATGATAAGAGAATCTATCGATTTTCGTCATTGTTTCTCTTTTTCTTTTTGGCGTTTGTTTCTCAGTGATGTGTTTTTCTTACTGGTCTTGCTCTTTTTACAGAGAAAAACACATCGCTGAGAAGTTTTTCATTTAGCTGTCAAAATGAAAAAATAAAATTGGCAATTAGGAGGCTGCCTATATATTCAACCAAAAAAAAAACCGATGCTTGCCATCATAGCATCAAGCTTGCCTGTATTTGTTCTGTGACATGCTTGCCCACACTTAGTGCAATCGTAAACCACTTCTACTCCATATCTTCTTTATGTGAATTTTTTAATTTTAACTGTGTCAAGTTTTCCGAACTCCCCCCTCCCCCTCTATGTTTGGTGACGTAAAATTTTCACCTTATTAGATTACTTTTCCCAGAAGTAAAAAGAGCAAAACCAACATTGTAGTGGTACCCAATTTTTCCATAATAAACCACCTTAACCTGCCAAGCTTGATTATATTTTGTCCTTAATCATAACCAGATCTTACCATCATGCACAAACACAAACTTGACCTTAAATATATCACCCTCTGCGCCAACTTCGAACTGGTTATTCATGTACTTTAATGACAGGCCGAGAAGTGATGTTGGATTCTTGTGTGGAACTGAGGGTTATGGAGAGTCCCAATTGTGATTGCAGGACTAAGAGTAGGTTGTGTAAATACTTGTCAGTTTATGGTTCTTTCTAACGTGCTCTGAAAGTGTTTTTAAGAAAAGGCTGTCTAAATGTGATTTATTTGGAAACTGATAAGAAATTAGGAAATCAGTATCTTTGAGAGAAAGGAAAAAATGAGAACATTTCGTTTTGCTGAGAGGAACTTCAGGTTATTGCATTCTAAGAGTGTCAAATTGAGATGCATGGTCTGAAAGTTTGACACAAATCCTTTCTTGTCATTTTGCAGAACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCAAACATTTGGATCTGTTCTATTCTTCTAGTGTTTTTTGATATTGATTTTCCAAAAAAAAAAAGAGAATG</genome_strand>
        <mrna_strand>GATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCAACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCAAACATTTGGATCTGTTCTATTCTTCTAGTGTTTTTTGATATTGATTTTCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614349" ref_strand="+" ref_description="SGN-E614349 [64134]">
      <seq>ttggaagtcagcttgggtccaatacgcagttcatgtatgaaggttcttttgcacaaggcttagactatggaaactcccaattatgaattttaagatgaacaaagaactttggatgcataccaaaaaaaagctgaatacatagaacagtggttagtcttttgctggtacaagatgccagccagggtttctcttcttgctgatctctgtgttaaactgtcaacagcaatgtttgaggactagacacctaaaggactcctactaatttctgcaaatatttttgtttgctatactttgattttaattctcttccgctctgtacataccgttgggttttgaatgtcacttggaataaaccatctattatagtttgtacagcacctaagtgcccatacatttggatctgttctattcctctagtgcttttttgatattgattttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="48227" stop="38361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47927" g_stop="47899" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47782" g_stop="47719" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="93" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40612" g_stop="40563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="142" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40562" i_stop="38976" i_length="1587">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38975" g_stop="38661" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="450" r_length="308" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E614349" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47927" e_stop="47899"/>
          <exon e_start="47782" e_stop="47719"/>
          <exon e_start="40612" e_stop="40563"/>
          <exon e_start="38975" e_stop="38661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGTCAGCTTGGGTCCAATACGCAGGTAAGGTGGTTGTATTTTATTTTGTTCTTTCTTTAGCTCATTTGCTTCACCATTTAGTAGTTCTTACGTGGATATTATCTAATAAGACACGCAATACTTCTTGTGGAAATTGACAGTTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAAGTAAGTTTTTCTCGTACCCAAAAAGTCTTTTTAATGATGTGCTTTTCATCTTTAAATGTTTTACAGGCAGCTTCTCTTCAATAAACTCAACCCTCATGTCATGACTTAGCAGGATCTCTTTTGCGTTTTGTGACACATTTTCTATATCAGGCAACAAACAGTTTGTTGCTCTGTTGCATCAGTCGATGCTACATTTTAGAAAGTAACATTGACTCATTTATAAATAAACCTAGAGCCAACAAATTTCCAAAACTGATTAACATTATTTTATTTCCATTACAATGATTGCTCCAGCCAAACAGATTCACTAAGAAACTAGCCTTCATGGAAGAAATGGTAGCTGGAACTCCCTCAACTTAGCTTTGGTCCTTCCCTTCCATGATGTCCAAAATATAGAGTTTTTGATGGATTGTCAAAGCATTCTCTCTATCTTTGCAGTATGCCTTAATGCAACACTTATAGAAATAAGTCATTGTCGAAATAAGAAGCAATTAACTCCCTTATATATTCAAGTAAAATATTGCAAAGAAGCCAAAATACTGCTGTTTCCACAAGTCCGATAATATATGCAAATTACAACAACAACATACCCAGTAAAATCCCACTAAGTGGGGTCTAGGGAGGGTAGAGTGTACGCTGACCTTATCACTCCCTTATGGGGGTAGAGGGGTTGTTTCCGAAAGACCCTCGGCTCAATTATTTTTCTTTTGAGGGGCTTTTGGGCCGGGAAGGGTTGGAATAGCGAGTGGCCGGATGAGCAAGGGAAGCTTAAATTATTAAGAATCCTTAATTGTCTATTTATGTTTCACATACTTGTGTTACCTACAACTAGTGAGCCTTGAAATGAGTACCCATTAATTCGCGATCTCAGAATTACAATCCGAGGCTGTGTTGATGAGATCCTTCAAAATACACGCAACCATGTCAATCCTACACAATTTGGTATCCATGTGGGATCGACACATTTGATTTGGTCAAATGTATCGTGGGTGCTTTGACGAAATCTATGGCGAAGAAGTATATGTTGATTAGGTATTTGTTTTGCTTATGTTCTATATATATTTAGATATTTACTAGAACACTTAGTTTTTATATGAACTATCTTATGGATAAACTACTAAGGGGTCGTTTGGTGATATGTATAAGGGAACTTAATACTGGGATAATTGTTGATAATTGTTGAGTACTCTTGATAATCCCTTATTTGGTTTCAAAGTTTGGCATAGCTCCATTCCAGGATTAGTAATTAGTACTAGGATAAGTTATCCCTATCTTTGGGTGGAATAGTAATATCAGATGACTTATCCCGAGATAAACTAGGTAAAATGATAAAAGTATCCCCTTAAACCCTATTTGTATATCACTCTTTAGTTTTCATATTCATGTATATTCACATCATTTTTGATATGATGCATAATAACATTCACAATCTTCACTACTCATTATCTTTATGACGATTCTTCATATTTTTCCATTAAAAATTCACACTTTATAAATATAATTCTTACTTATGAATATATTATATGCTGTATTCATTTAACCAATTTTTATCTTTATTCATATTTTGATTTCTCTACTGCTAGATTACATGTTTTTAATTAATTATTCCTTTAGTCACTTGAAATTTTGTATTTTATATATCAATTAAAATGAAGTTTAACTTTAATATTTTACAGTTTAAGAGTGATATGTGTTTAAGTGAAGTGACATAAATAATAAAATGAAAGTTTTATTTTTAAGCTAAATAATATGGAAGTTTTTATTTCATAAATAAAATAAGATGAGAACTTTATTTTTGAACACATACGGCACAATCATGGAAATAAACACACAAAAATATTAAGTCAAATAAGATGAAATTTTTATTTTTAGGAATAAATTACCAAAGCTTGCAAAGAAAATATAAAAAACTGGGTATTTCTATAAACAAATAATTTGTTCTTAGAAAATATGCGATGCATATCATTTTGAATATAACAAACGAGACAGGATAAGAGATAATCCTAGCATAACTAATCCTAGCATAACTTATCCCAACATAATGTTTCTTAGCATAACTTGTGAGTATATCTTTCACACATTAATTTCAGAAAATCAGACCCTGACATGCAACTAAGGAGCAAACATGACATACTTACAATTTTATCACAAACACATAAAGGAAATACCTGAACTTTTCTTCAAAGACATTCTTAACCTATGTAAATGGCCGGTACTTAACCAAAGAGCTTGTTATGCCAGAAATCGATAGGCTTCAACTGGATTACCCAGCTTCGGCATAATAAACCTAGAAAATATATTGACTTGCCGGAAAAGGTTTTTAAGTTTTGAAGCTTTGCTATCTCTGGTGGAGTCTAGCTAGACAATTTACAATTGATAGGCATCAAGCCAGATTAGTTGTTGTAAGTTCACTATTTTTGGGTGGTATCTTCAACAAAAAGGAAGTATTGTAGTATCTGGTATAGAGTTTAGTTTCCGAAGTGTCCAATGATTTTCGATCGCTGGTGGTATCTCGGTGTCCAACTCATTTTCAAAAAAGCACAAGGCAATGTCACCCACATTTGGTGACTGTTAGGGGTCATTTGGTTTGAAGTTATGATTAAATTAATTATGATGGGATAAGTTATACTGTGATTAGTAATGATGGATTAGTTATGTTGGGATTGTTCATTCTGAGATTATTTCTTATTGATGGTTTGGTTATATTCAAAATAGTGTGCATTGCATAAATTTTAAGAAGAAGTTGTTTGTTTACAAAAATAACCTTCACTTTGTTAGTTTTTTACATTTCTTTGCAAGTTTTACTTATTCATTCTTAAAAATAATACTTTCATCTTATTTCACTTAAATATTTTTGTGTGTGCATTCTCATGATGGTATAAAATGTATTTTAAAATAAAATCTTTCTTCTTATTTAGGCTAAATAGAACTTCCATCTTATGTTAGTTAAAGTAAATGAGTATTTATTATTTGTATTGCTTCATTTGAGAGCATATCTCTTAAATAGTAACATATTAAAATTAACTCCATTTTAATTGATGTACAAAATACAAGCTTTCAAGTGACTAAAATAATATACAATTAAATATATGTAATTCAACTGTAGGGAAATCAAAATATAAGTAACCATTAGAACTAGGCAAATAAATTCATAAACAAAAATTATATTTGTACAATGTAATTATCTAATAGACAAATATAAAGAATTATCATAACAATAAGAAGTGGTGAAGGTTGTGAATGTCATATTGTACATGGTATTAAAAATAATGTGAATATACATGAATGTGAAAAGTGATATATAAAAAGTATTTAAAGAGATATCTTTGTCATTTTATCTCGAAATTACAATTCCAGCCAAAGATTGGGATAACTTTATCCCCATACTAATTATTAACCTTGAGATAAGTTATCCTAAACTTCGTAACTAAACAAGGAATTAAATGTTACTCAAAATTTATACCGGGATTAACTCTCGTTATCCTATATACCAAACAACCCCTCATTGTTGTGTTCAATAGGCACAATTTGCACGTACTTCAGGTGTTCCGTTGGTCGCTCTCATCTAAAAGAAAGTTTTTGTCAAGTTCAAGGTGCTATCTCGGTATTTTGACTTTTTATTCATGTCATGAAATTAAAATGGAGAGAAAAACCATTAAGAACGAGTCAGTTTTTTTTTGACAATTGGTAAGTAGTATTCTTCAATGAGAAATAGAAAAGGAGGGGTTTCTATATTCCCTCTTGGTGCTCTCTCTGTAATGAGACTAGGAAACCAACAACCATTTGTTCCTCCGTTGCAAAGTCACAACACAATTGTGGAACCTTTTTTTTTGTTTTACACATACAGAATGCCTGAGCATACAACAAAACTACTTGGTTGCTGGATCAACAGAGGGGGAAGAAAATCTAAGAAAAAGTGGTGGAGTATAATGCCATCAAGCATCTGGTGGTGTATTTGGAAAGAATGAAATAACATATGCTATGATAACAAAGCTAATTCAATAGAAAGTCAAATAGAACTGCTTGACTACTTCTTATTTTTGGTGCAAAGAGGAAGGGATAAAAGAAGCTGCACAAATTTTAGATTTTATAGGCACTTTGTAATTTATTAGCCTTTTGTTTTTTTCTCTTGTTGGAAACTAATTTTTGGAGGTCTCCAACATATCCTTAATGCTGATGAATACAATATTATCTTTATCAGAAAAAAAAAGATTCGATAAACTCAGAAGAAACTTCCTTTTGAATACAATGATGGAGCCCTTTACTTCTTTGCCTTTTTTCCAAAGGAAGTCTCTTCTGAGTTTATCTAAAAAAAAAATTGATAAAGATAATGTTGTATACATCAGCATCAAGGATATGTTGGAGACCTTCAATAATTAGTTTCCCACAGGAGAAAAAACAAAGGTGATGCTAATAGATTACAAAGTGCCTATAAAATCCAAAATTTGTGCAGCTTCTTCTATTCCTTCCTCTTTACACTAAAAATAAAAAGTAGTCAAGCAGAGTTCCATTTTACTTTCTCTATTGGATTAGCTTTGCTATCATAACATCTGCTATTTCTTTCTTTCCAAATACACCGCCAAATGCATGATGTTATTATACTCCACTTTTTCTTAGATTTTCTCCCCCCTCTGTTGATCCAACAACTAAGTAGATCTGTTGTATGCTCAGGCATAAACCATTTTGTATGTGCTAGTCCCAAAAAAATGTACCACAATTGTGTTGTCACTTCGCAATGGAGGAACAAATGGTTGTTGGTTTCCTCAGTCTCATTACAGAGAGAGCACTAAGAGGCAACATAGAAACCCCTCCTTTTCAATTTCTCATGTGTGGAGCATGCTCTTCTGGCAACCAACCAAGAGAAACACTTTACCTTGGTTGGCACCTTGTTCCTCCAAATCTGCTTCCAGGGGCCAAGCTTACCACCTGGATGCTCCTTCACCTCCTTAATATATAGCTTGTTAACAGAAAGGCTACCATCTCTTGAGTGTTTCCATATGATAGAATCTTTTTCTGCCGATAACCCATTGAGAACATGTAAGTCATTTAAATGCCTTCTAAACACAATATTCCATCCATAAATAGACCAAACCCCAGCCACTGTTTCGTCCGGATTTGTACACAAGGAGAATAGGTCAGGAAATAATATTATCAGTGTCTCATTTCCATTCTAATTCTCTTTCCAGAATAGGATTCTCGTCCCGTTTCCCACCGTGTAGACTATGTTTCTACTTAGATCGTCCACAAATTTCTTATTGTTCTCCAAACTGACACCCCATAACTGCTATTCACAGAGTTGGAGACCCAATTTCCATTCAACCCGTACTTGTTGACTATCACCTCCCTCCATAGTGCTTCTTCCTTAGTGTTGAACCTCCATTGCCATTTTGACAAGAGACATCTTTTCTGCAACCCCAAGTTTCTGATTCTAAGTCCACCAGATTGCTTATGTAACTGTGCAAGATTGTTTATGTAACTGTGCAGTCTGCTACTTGACTATATGCAAACCCTTCCCTTCTTTATTGCCTTCCACAAGAAATCTGTTCTCAGTTTGTCAAGTCTTTCTTCCACTTTGGCAGGCATAGGGAATAAAGACATAACATAAGTTGGAAGAGAGTCCAACACAGAGTTTACTGAAGTGACTCTCCCTCCCAAAGAGATATACTGAGCTTTCCAATTGGCCAATTTCTTCTCTGTCTTTTCAATTATGCCGCCCCAAATTTCTAGCTCCTTGTGATTGTGCCCCAATGGCATGCCCAAGTAAGTAGTGGGAAGCTGTTCTACTTTACACCCAATATCCTTGCCAGGCTCTGAAGTTGAGGAACTTCTTTAATTGGAAAGATGCTGCTTTTCCTCCAATTTATAGATAAACCCGAGACTGCTTCAAAAACCACCAGAGTCACTCTTATAAAGGCAACCTGTTCAGCCTTGGCTTCACTGGAAGTAATTGTGTCATCTGCATAAATCAGATGACAAATCTGCATTTCCCTTCCTCAAGAGTTGCGGACCTTGAAGCCTTTTAACCAATTGTTTTGGGTAGCTACTCTCATCATACTATTGTAGCCCTCCATCGCTTGGATGAAAAGAAAGGAGAGAGTGGGTCTCCCTGCCTTAAACCCCTTTCGGATGGGAAAAAACCAGCAGGTTCTCCATTCACTAATTGGAAAACCTAACAGTTTTTATGCAATAATCGATCCAATTCAGCTATTTCTCCCCAAAACCCATTTGTTTTAGAATCCTGATAAGGAATCCCAATTGACATGATCGTAAGCCTTCTCTATGTCCAGCTTGCTCATAATTCCTGGATCATCTCCTTTAACTCTGATGTCCACACACTCACTTGCTATAAGTGCTGCATCAATAATCTGCCTACCTTTTATGAAGGCCATCTGGTGTTTAATAACAAGCTCACTGATCACTTTCTTTAACCTTTGTGCTAGTATCTTAGCAAATGATCTTGTATATTCCACCTATCAAACTTATAGGTCTGAAATCTCTCAGTTCCACAACTCCCACCTTCTTGGGGAACAATGCCACATAGGTTGCATTTAGGCTCTTCTCAAACACTTGCTCGGAGCCGGGTATGGGTATGCGATACAAGTGTGGATCTGAAGGTTGGATTTTTTATCATATAAATTTTAGGATTCAGGGTACGGATCCGAGATATCTATTATCTTATTTATAAGATATCTCCTGTAATACCAAAATTTTATCTTATTTTATATAGCTATATATATGAATATAAACCCAAAAAATAAACTAAATACCAGATCGATCTATACTTCTTGATTATAAATGCAGTCAAAACACTCAAGTTAAGTTGATTGAATTTGATGTGGATCCCACACCTACATGGCTACACCCACAACCAAATCGATCATGGATGTGTCAAGGATTTTGAAGGGTCCAAGAAACATAGCTCCAATGGACTTCAATTGTTCTTGGCACTTGTGTTTCTTTTGTAATTTTTACAGTTACATGAATGTCAGCAACTCAGCATGTTATGGCACTCTTGAGGCTCGATTGCTCTTAGATTATTCAAATTGGCATATTTCTCCTTGTAGCTTATTCAGTTTCTAATCACACTTATTTATTTGTTCATGTAGGATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAGGTGACCCCTTAAACTTGTTTTTTTTGCTCTCCATTTTTACACTTAAGCCAAGTAAAGTACCTACTGAGCACTTGAAGTGAAGACAAATTTCTTACTTGGTACAGTGTGACACCACTTATGAGAGTGTGCAAATTCATTTTTCAATTTATTTATTTTTTTGACAAGGCATTTTTCAAATTTTTTCTTCAATCTACTAATTTTCCACTGTATCTCGACCGCTGTAGCCGCTGCAAATGGCCTCCAATCCACCGTCACTATGCCACATCCACCGCCATGTAAACTACCTCTATTACTGTCCCACCCAGCTCCTCCTCCACTTTGCGGCATTGGCACCACCGCAAAGCCCAAGCCCAAGCCCAAACTGAAACCGAATGAAAGCCCACACCTTCACCATTTAAGTTCATGTCCATAAGAAACCCATGCAAGTTCTTTCTCCAGTAACCCATGAAATTCTCAAAATTTTAGAACAATTTCAGAGGCAAAAGATAGATTATCTAGGCCCAAGGACCTAATGGGCGTCTATAGTCATCGACGGAGGACAATTGTAAGCTGTGATAGAGGTGGTGTTGTGAGGGAATGAACCAGTGGACATGGCCATTAAAGCACTTTCCTAGTGAGGGACTACAGTGGCGACACAATGCTTGTTGAGTGCCCATGATAAGAGAATCTATCGATTTTCGTCATTGTTTCTCTTTTTCTTTTTGGCGTTTGTTTCTCAGTGATGTGTTTTTCTTACTGGTCTTGCTCTTTTTACAGAGAAAAACACATCGCTGAGAAGTTTTTCATTTAGCTGTCAAAATGAAAAAATAAAATTGGCAATTAGGAGGCTGCCTATATATTCAACCAAAAAAAAAACCGATGCTTGCCATCATAGCATCAAGCTTGCCTGTATTTGTTCTGTGACATGCTTGCCCACACTTAGTGCAATCGTAAACCACTTCTACTCCATATCTTCTTTATGTGAATTTTTTAATTTTAACTGTGTCAAGTTTTCCGAACTCCCCCCTCCCCCTCTATGTTTGGTGACGTAAAATTTTCACCTTATTAGATTACTTTTCCCAGAAGTAAAAAGAGCAAAACCAACATTGTAGTGGTACCCAATTTTTCCATAATAAACCACCTTAACCTGCCAAGCTTGATTATATTTTGTCCTTAATCATAACCAGATCTTACCATCATGCACAAACACAAACTTGACCTTAAATATATCACCCTCTGCGCCAACTTCGAACTGGTTATTCATGTACTTTAATGACAGGCCGAGAAGTGATGTTGGATTCTTGTGTGGAACTGAGGGTTATGGAGAGTCCCAATTGTGATTGCAGGACTAAGAGTAGGTTGTGTAAATACTTGTCAGTTTATGGTTCTTTCTAACGTGCTCTGAAAGTGTTTTTAAGAAAAGGCTGTCTAAATGTGATTTATTTGGAAACTGATAAGAAATTAGGAAATCAGTATCTTTGAGAGAAAGGAAAAAATGAGAACATTTCGTTTTGCTGAGAGGAACTTCAGGTTATTGCATTCTAAGAGTGTCAAATTGAGATGCATGGTCTGAAAGTTTGACACAAATCCTTTCTTGTCATTTTGCAGAACAGTGGTTAGTCTTTTGCTGGTACAAGAT----GCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCAAACATTTGGATCTGTTCTATTCTTCTAGTG-TTTTTTGATATTGATTTTCCAAAAAAAAAA</genome_strand>
        <mrna_strand>TTGGAAGTCAGCTTGGGTCCAATACGCAG....................................................................................................................TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACAAAGAACTTTGGATGCATA-CCAAAAAAAAGCTGAATACATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGCCAGGGTTTCTCTTCTTGCTGATCTCTGTGTTAAACTGTCAACAGCA--------A--TGTTT--GAGGACTAGACACCTAAAGGACTCCTACTAATTTCTGCAAATATTTTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCGTTGGGTTTTGAATGTCACTTGGAATAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCATACATTTGGATCTGTTCTATTCCTCTAGTGCTTTTTTGATATTGATTTTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225841" ref_strand="+" ref_description="SGN-E225841 [cLEL-17-G21](-)">
      <seq>gttggtgatgcatctgttagaaaagatgtagttggatgtcagcttgggtccaatacgcagttcatgtatgaaggttcttttgcacaaggcttagactatggaaactcccaattatgaattttaagatgaacaaagaactttggatgcatacccaaaaaaaagctgaatacatagaacagtggttagtcttttgctggtacaagatgccagggtttctcttcttgctgatatctgtgttaaactgtcaacaacattgttggtacttgtttgagaggactagacgcctaaaggattcctactaatttctgcaaatatatttgtttgctatactttgattttaattctcttccgctctgtacataccatttggttttgaatgtcacttggaacaaaccatctattatagtttgtacagcacctaagtgccccaaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="48258" stop="38418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47958" g_stop="47899" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47782" g_stop="47719" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="124" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40612" g_stop="40563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="174" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40562" i_stop="38976" i_length="1587">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38975" g_stop="38718" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="432" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="449"/>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E225841" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47958" e_stop="47899"/>
          <exon e_start="47782" e_stop="47719"/>
          <exon e_start="40612" e_stop="40563"/>
          <exon e_start="38975" e_stop="38718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAGGTAAGGTGGTTGTATTTTATTTTGTTCTTTCTTTAGCTCATTTGCTTCACCATTTAGTAGTTCTTACGTGGATATTATCTAATAAGACACGCAATACTTCTTGTGGAAATTGACAGTTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAAGTAAGTTTTTCTCGTACCCAAAAAGTCTTTTTAATGATGTGCTTTTCATCTTTAAATGTTTTACAGGCAGCTTCTCTTCAATAAACTCAACCCTCATGTCATGACTTAGCAGGATCTCTTTTGCGTTTTGTGACACATTTTCTATATCAGGCAACAAACAGTTTGTTGCTCTGTTGCATCAGTCGATGCTACATTTTAGAAAGTAACATTGACTCATTTATAAATAAACCTAGAGCCAACAAATTTCCAAAACTGATTAACATTATTTTATTTCCATTACAATGATTGCTCCAGCCAAACAGATTCACTAAGAAACTAGCCTTCATGGAAGAAATGGTAGCTGGAACTCCCTCAACTTAGCTTTGGTCCTTCCCTTCCATGATGTCCAAAATATAGAGTTTTTGATGGATTGTCAAAGCATTCTCTCTATCTTTGCAGTATGCCTTAATGCAACACTTATAGAAATAAGTCATTGTCGAAATAAGAAGCAATTAACTCCCTTATATATTCAAGTAAAATATTGCAAAGAAGCCAAAATACTGCTGTTTCCACAAGTCCGATAATATATGCAAATTACAACAACAACATACCCAGTAAAATCCCACTAAGTGGGGTCTAGGGAGGGTAGAGTGTACGCTGACCTTATCACTCCCTTATGGGGGTAGAGGGGTTGTTTCCGAAAGACCCTCGGCTCAATTATTTTTCTTTTGAGGGGCTTTTGGGCCGGGAAGGGTTGGAATAGCGAGTGGCCGGATGAGCAAGGGAAGCTTAAATTATTAAGAATCCTTAATTGTCTATTTATGTTTCACATACTTGTGTTACCTACAACTAGTGAGCCTTGAAATGAGTACCCATTAATTCGCGATCTCAGAATTACAATCCGAGGCTGTGTTGATGAGATCCTTCAAAATACACGCAACCATGTCAATCCTACACAATTTGGTATCCATGTGGGATCGACACATTTGATTTGGTCAAATGTATCGTGGGTGCTTTGACGAAATCTATGGCGAAGAAGTATATGTTGATTAGGTATTTGTTTTGCTTATGTTCTATATATATTTAGATATTTACTAGAACACTTAGTTTTTATATGAACTATCTTATGGATAAACTACTAAGGGGTCGTTTGGTGATATGTATAAGGGAACTTAATACTGGGATAATTGTTGATAATTGTTGAGTACTCTTGATAATCCCTTATTTGGTTTCAAAGTTTGGCATAGCTCCATTCCAGGATTAGTAATTAGTACTAGGATAAGTTATCCCTATCTTTGGGTGGAATAGTAATATCAGATGACTTATCCCGAGATAAACTAGGTAAAATGATAAAAGTATCCCCTTAAACCCTATTTGTATATCACTCTTTAGTTTTCATATTCATGTATATTCACATCATTTTTGATATGATGCATAATAACATTCACAATCTTCACTACTCATTATCTTTATGACGATTCTTCATATTTTTCCATTAAAAATTCACACTTTATAAATATAATTCTTACTTATGAATATATTATATGCTGTATTCATTTAACCAATTTTTATCTTTATTCATATTTTGATTTCTCTACTGCTAGATTACATGTTTTTAATTAATTATTCCTTTAGTCACTTGAAATTTTGTATTTTATATATCAATTAAAATGAAGTTTAACTTTAATATTTTACAGTTTAAGAGTGATATGTGTTTAAGTGAAGTGACATAAATAATAAAATGAAAGTTTTATTTTTAAGCTAAATAATATGGAAGTTTTTATTTCATAAATAAAATAAGATGAGAACTTTATTTTTGAACACATACGGCACAATCATGGAAATAAACACACAAAAATATTAAGTCAAATAAGATGAAATTTTTATTTTTAGGAATAAATTACCAAAGCTTGCAAAGAAAATATAAAAAACTGGGTATTTCTATAAACAAATAATTTGTTCTTAGAAAATATGCGATGCATATCATTTTGAATATAACAAACGAGACAGGATAAGAGATAATCCTAGCATAACTAATCCTAGCATAACTTATCCCAACATAATGTTTCTTAGCATAACTTGTGAGTATATCTTTCACACATTAATTTCAGAAAATCAGACCCTGACATGCAACTAAGGAGCAAACATGACATACTTACAATTTTATCACAAACACATAAAGGAAATACCTGAACTTTTCTTCAAAGACATTCTTAACCTATGTAAATGGCCGGTACTTAACCAAAGAGCTTGTTATGCCAGAAATCGATAGGCTTCAACTGGATTACCCAGCTTCGGCATAATAAACCTAGAAAATATATTGACTTGCCGGAAAAGGTTTTTAAGTTTTGAAGCTTTGCTATCTCTGGTGGAGTCTAGCTAGACAATTTACAATTGATAGGCATCAAGCCAGATTAGTTGTTGTAAGTTCACTATTTTTGGGTGGTATCTTCAACAAAAAGGAAGTATTGTAGTATCTGGTATAGAGTTTAGTTTCCGAAGTGTCCAATGATTTTCGATCGCTGGTGGTATCTCGGTGTCCAACTCATTTTCAAAAAAGCACAAGGCAATGTCACCCACATTTGGTGACTGTTAGGGGTCATTTGGTTTGAAGTTATGATTAAATTAATTATGATGGGATAAGTTATACTGTGATTAGTAATGATGGATTAGTTATGTTGGGATTGTTCATTCTGAGATTATTTCTTATTGATGGTTTGGTTATATTCAAAATAGTGTGCATTGCATAAATTTTAAGAAGAAGTTGTTTGTTTACAAAAATAACCTTCACTTTGTTAGTTTTTTACATTTCTTTGCAAGTTTTACTTATTCATTCTTAAAAATAATACTTTCATCTTATTTCACTTAAATATTTTTGTGTGTGCATTCTCATGATGGTATAAAATGTATTTTAAAATAAAATCTTTCTTCTTATTTAGGCTAAATAGAACTTCCATCTTATGTTAGTTAAAGTAAATGAGTATTTATTATTTGTATTGCTTCATTTGAGAGCATATCTCTTAAATAGTAACATATTAAAATTAACTCCATTTTAATTGATGTACAAAATACAAGCTTTCAAGTGACTAAAATAATATACAATTAAATATATGTAATTCAACTGTAGGGAAATCAAAATATAAGTAACCATTAGAACTAGGCAAATAAATTCATAAACAAAAATTATATTTGTACAATGTAATTATCTAATAGACAAATATAAAGAATTATCATAACAATAAGAAGTGGTGAAGGTTGTGAATGTCATATTGTACATGGTATTAAAAATAATGTGAATATACATGAATGTGAAAAGTGATATATAAAAAGTATTTAAAGAGATATCTTTGTCATTTTATCTCGAAATTACAATTCCAGCCAAAGATTGGGATAACTTTATCCCCATACTAATTATTAACCTTGAGATAAGTTATCCTAAACTTCGTAACTAAACAAGGAATTAAATGTTACTCAAAATTTATACCGGGATTAACTCTCGTTATCCTATATACCAAACAACCCCTCATTGTTGTGTTCAATAGGCACAATTTGCACGTACTTCAGGTGTTCCGTTGGTCGCTCTCATCTAAAAGAAAGTTTTTGTCAAGTTCAAGGTGCTATCTCGGTATTTTGACTTTTTATTCATGTCATGAAATTAAAATGGAGAGAAAAACCATTAAGAACGAGTCAGTTTTTTTTTGACAATTGGTAAGTAGTATTCTTCAATGAGAAATAGAAAAGGAGGGGTTTCTATATTCCCTCTTGGTGCTCTCTCTGTAATGAGACTAGGAAACCAACAACCATTTGTTCCTCCGTTGCAAAGTCACAACACAATTGTGGAACCTTTTTTTTTGTTTTACACATACAGAATGCCTGAGCATACAACAAAACTACTTGGTTGCTGGATCAACAGAGGGGGAAGAAAATCTAAGAAAAAGTGGTGGAGTATAATGCCATCAAGCATCTGGTGGTGTATTTGGAAAGAATGAAATAACATATGCTATGATAACAAAGCTAATTCAATAGAAAGTCAAATAGAACTGCTTGACTACTTCTTATTTTTGGTGCAAAGAGGAAGGGATAAAAGAAGCTGCACAAATTTTAGATTTTATAGGCACTTTGTAATTTATTAGCCTTTTGTTTTTTTCTCTTGTTGGAAACTAATTTTTGGAGGTCTCCAACATATCCTTAATGCTGATGAATACAATATTATCTTTATCAGAAAAAAAAAGATTCGATAAACTCAGAAGAAACTTCCTTTTGAATACAATGATGGAGCCCTTTACTTCTTTGCCTTTTTTCCAAAGGAAGTCTCTTCTGAGTTTATCTAAAAAAAAAATTGATAAAGATAATGTTGTATACATCAGCATCAAGGATATGTTGGAGACCTTCAATAATTAGTTTCCCACAGGAGAAAAAACAAAGGTGATGCTAATAGATTACAAAGTGCCTATAAAATCCAAAATTTGTGCAGCTTCTTCTATTCCTTCCTCTTTACACTAAAAATAAAAAGTAGTCAAGCAGAGTTCCATTTTACTTTCTCTATTGGATTAGCTTTGCTATCATAACATCTGCTATTTCTTTCTTTCCAAATACACCGCCAAATGCATGATGTTATTATACTCCACTTTTTCTTAGATTTTCTCCCCCCTCTGTTGATCCAACAACTAAGTAGATCTGTTGTATGCTCAGGCATAAACCATTTTGTATGTGCTAGTCCCAAAAAAATGTACCACAATTGTGTTGTCACTTCGCAATGGAGGAACAAATGGTTGTTGGTTTCCTCAGTCTCATTACAGAGAGAGCACTAAGAGGCAACATAGAAACCCCTCCTTTTCAATTTCTCATGTGTGGAGCATGCTCTTCTGGCAACCAACCAAGAGAAACACTTTACCTTGGTTGGCACCTTGTTCCTCCAAATCTGCTTCCAGGGGCCAAGCTTACCACCTGGATGCTCCTTCACCTCCTTAATATATAGCTTGTTAACAGAAAGGCTACCATCTCTTGAGTGTTTCCATATGATAGAATCTTTTTCTGCCGATAACCCATTGAGAACATGTAAGTCATTTAAATGCCTTCTAAACACAATATTCCATCCATAAATAGACCAAACCCCAGCCACTGTTTCGTCCGGATTTGTACACAAGGAGAATAGGTCAGGAAATAATATTATCAGTGTCTCATTTCCATTCTAATTCTCTTTCCAGAATAGGATTCTCGTCCCGTTTCCCACCGTGTAGACTATGTTTCTACTTAGATCGTCCACAAATTTCTTATTGTTCTCCAAACTGACACCCCATAACTGCTATTCACAGAGTTGGAGACCCAATTTCCATTCAACCCGTACTTGTTGACTATCACCTCCCTCCATAGTGCTTCTTCCTTAGTGTTGAACCTCCATTGCCATTTTGACAAGAGACATCTTTTCTGCAACCCCAAGTTTCTGATTCTAAGTCCACCAGATTGCTTATGTAACTGTGCAAGATTGTTTATGTAACTGTGCAGTCTGCTACTTGACTATATGCAAACCCTTCCCTTCTTTATTGCCTTCCACAAGAAATCTGTTCTCAGTTTGTCAAGTCTTTCTTCCACTTTGGCAGGCATAGGGAATAAAGACATAACATAAGTTGGAAGAGAGTCCAACACAGAGTTTACTGAAGTGACTCTCCCTCCCAAAGAGATATACTGAGCTTTCCAATTGGCCAATTTCTTCTCTGTCTTTTCAATTATGCCGCCCCAAATTTCTAGCTCCTTGTGATTGTGCCCCAATGGCATGCCCAAGTAAGTAGTGGGAAGCTGTTCTACTTTACACCCAATATCCTTGCCAGGCTCTGAAGTTGAGGAACTTCTTTAATTGGAAAGATGCTGCTTTTCCTCCAATTTATAGATAAACCCGAGACTGCTTCAAAAACCACCAGAGTCACTCTTATAAAGGCAACCTGTTCAGCCTTGGCTTCACTGGAAGTAATTGTGTCATCTGCATAAATCAGATGACAAATCTGCATTTCCCTTCCTCAAGAGTTGCGGACCTTGAAGCCTTTTAACCAATTGTTTTGGGTAGCTACTCTCATCATACTATTGTAGCCCTCCATCGCTTGGATGAAAAGAAAGGAGAGAGTGGGTCTCCCTGCCTTAAACCCCTTTCGGATGGGAAAAAACCAGCAGGTTCTCCATTCACTAATTGGAAAACCTAACAGTTTTTATGCAATAATCGATCCAATTCAGCTATTTCTCCCCAAAACCCATTTGTTTTAGAATCCTGATAAGGAATCCCAATTGACATGATCGTAAGCCTTCTCTATGTCCAGCTTGCTCATAATTCCTGGATCATCTCCTTTAACTCTGATGTCCACACACTCACTTGCTATAAGTGCTGCATCAATAATCTGCCTACCTTTTATGAAGGCCATCTGGTGTTTAATAACAAGCTCACTGATCACTTTCTTTAACCTTTGTGCTAGTATCTTAGCAAATGATCTTGTATATTCCACCTATCAAACTTATAGGTCTGAAATCTCTCAGTTCCACAACTCCCACCTTCTTGGGGAACAATGCCACATAGGTTGCATTTAGGCTCTTCTCAAACACTTGCTCGGAGCCGGGTATGGGTATGCGATACAAGTGTGGATCTGAAGGTTGGATTTTTTATCATATAAATTTTAGGATTCAGGGTACGGATCCGAGATATCTATTATCTTATTTATAAGATATCTCCTGTAATACCAAAATTTTATCTTATTTTATATAGCTATATATATGAATATAAACCCAAAAAATAAACTAAATACCAGATCGATCTATACTTCTTGATTATAAATGCAGTCAAAACACTCAAGTTAAGTTGATTGAATTTGATGTGGATCCCACACCTACATGGCTACACCCACAACCAAATCGATCATGGATGTGTCAAGGATTTTGAAGGGTCCAAGAAACATAGCTCCAATGGACTTCAATTGTTCTTGGCACTTGTGTTTCTTTTGTAATTTTTACAGTTACATGAATGTCAGCAACTCAGCATGTTATGGCACTCTTGAGGCTCGATTGCTCTTAGATTATTCAAATTGGCATATTTCTCCTTGTAGCTTATTCAGTTTCTAATCACACTTATTTATTTGTTCATGTAGGATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAGGTGACCCCTTAAACTTGTTTTTTTTGCTCTCCATTTTTACACTTAAGCCAAGTAAAGTACCTACTGAGCACTTGAAGTGAAGACAAATTTCTTACTTGGTACAGTGTGACACCACTTATGAGAGTGTGCAAATTCATTTTTCAATTTATTTATTTTTTTGACAAGGCATTTTTCAAATTTTTTCTTCAATCTACTAATTTTCCACTGTATCTCGACCGCTGTAGCCGCTGCAAATGGCCTCCAATCCACCGTCACTATGCCACATCCACCGCCATGTAAACTACCTCTATTACTGTCCCACCCAGCTCCTCCTCCACTTTGCGGCATTGGCACCACCGCAAAGCCCAAGCCCAAGCCCAAACTGAAACCGAATGAAAGCCCACACCTTCACCATTTAAGTTCATGTCCATAAGAAACCCATGCAAGTTCTTTCTCCAGTAACCCATGAAATTCTCAAAATTTTAGAACAATTTCAGAGGCAAAAGATAGATTATCTAGGCCCAAGGACCTAATGGGCGTCTATAGTCATCGACGGAGGACAATTGTAAGCTGTGATAGAGGTGGTGTTGTGAGGGAATGAACCAGTGGACATGGCCATTAAAGCACTTTCCTAGTGAGGGACTACAGTGGCGACACAATGCTTGTTGAGTGCCCATGATAAGAGAATCTATCGATTTTCGTCATTGTTTCTCTTTTTCTTTTTGGCGTTTGTTTCTCAGTGATGTGTTTTTCTTACTGGTCTTGCTCTTTTTACAGAGAAAAACACATCGCTGAGAAGTTTTTCATTTAGCTGTCAAAATGAAAAAATAAAATTGGCAATTAGGAGGCTGCCTATATATTCAACCAAAAAAAAAACCGATGCTTGCCATCATAGCATCAAGCTTGCCTGTATTTGTTCTGTGACATGCTTGCCCACACTTAGTGCAATCGTAAACCACTTCTACTCCATATCTTCTTTATGTGAATTTTTTAATTTTAACTGTGTCAAGTTTTCCGAACTCCCCCCTCCCCCTCTATGTTTGGTGACGTAAAATTTTCACCTTATTAGATTACTTTTCCCAGAAGTAAAAAGAGCAAAACCAACATTGTAGTGGTACCCAATTTTTCCATAATAAACCACCTTAACCTGCCAAGCTTGATTATATTTTGTCCTTAATCATAACCAGATCTTACCATCATGCACAAACACAAACTTGACCTTAAATATATCACCCTCTGCGCCAACTTCGAACTGGTTATTCATGTACTTTAATGACAGGCCGAGAAGTGATGTTGGATTCTTGTGTGGAACTGAGGGTTATGGAGAGTCCCAATTGTGATTGCAGGACTAAGAGTAGGTTGTGTAAATACTTGTCAGTTTATGGTTCTTTCTAACGTGCTCTGAAAGTGTTTTTAAGAAAAGGCTGTCTAAATGTGATTTATTTGGAAACTGATAAGAAATTAGGAAATCAGTATCTTTGAGAGAAAGGAAAAAATGAGAACATTTCGTTTTGCTGAGAGGAACTTCAGGTTATTGCATTCTAAGAGTGTCAAATTGAGATGCATGGTCTGAAAGTTTGACACAAATCCTTTCTTGTCATTTTGCAGAACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCAAAC</genome_strand>
        <mrna_strand>GTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAG....................................................................................................................TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225401" ref_strand="+" ref_description="SGN-E225401 [cLEL-17-G21](-)">
      <seq>tgcatctgttagaaaagatgtagttggatgtcagcttgggtccaatacgcagttcatgtatgaaggttcttttgcacaaggcttagactatggaaactcccaattatgaattttaagatgaacaaagaactttggatgcatacccaaaaaaaagctgaatacatagaacagtggttagtcttttgctggtacaagatgccagggtttctcttcttgctgatatctgtgttaaactgtcaacaacattgttggtacttgtttgagaggactagacgcctaaaggattcctactaatttctgcaaatatatttgtttgctatactttgattttaattctcttccgctctgtacataccatttggttttgaatgtcacttggaacaaaccatctattatagtttgtacagcacctaagtgcccaaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="48250" stop="38417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47950" g_stop="47899" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47782" g_stop="47719" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="116" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40612" g_stop="40563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="166" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40562" i_stop="38976" i_length="1587">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38975" g_stop="38718" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="424" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="441"/>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E225401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47950" e_stop="47899"/>
          <exon e_start="47782" e_stop="47719"/>
          <exon e_start="40612" e_stop="40563"/>
          <exon e_start="38975" e_stop="38718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAGGTAAGGTGGTTGTATTTTATTTTGTTCTTTCTTTAGCTCATTTGCTTCACCATTTAGTAGTTCTTACGTGGATATTATCTAATAAGACACGCAATACTTCTTGTGGAAATTGACAGTTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAAGTAAGTTTTTCTCGTACCCAAAAAGTCTTTTTAATGATGTGCTTTTCATCTTTAAATGTTTTACAGGCAGCTTCTCTTCAATAAACTCAACCCTCATGTCATGACTTAGCAGGATCTCTTTTGCGTTTTGTGACACATTTTCTATATCAGGCAACAAACAGTTTGTTGCTCTGTTGCATCAGTCGATGCTACATTTTAGAAAGTAACATTGACTCATTTATAAATAAACCTAGAGCCAACAAATTTCCAAAACTGATTAACATTATTTTATTTCCATTACAATGATTGCTCCAGCCAAACAGATTCACTAAGAAACTAGCCTTCATGGAAGAAATGGTAGCTGGAACTCCCTCAACTTAGCTTTGGTCCTTCCCTTCCATGATGTCCAAAATATAGAGTTTTTGATGGATTGTCAAAGCATTCTCTCTATCTTTGCAGTATGCCTTAATGCAACACTTATAGAAATAAGTCATTGTCGAAATAAGAAGCAATTAACTCCCTTATATATTCAAGTAAAATATTGCAAAGAAGCCAAAATACTGCTGTTTCCACAAGTCCGATAATATATGCAAATTACAACAACAACATACCCAGTAAAATCCCACTAAGTGGGGTCTAGGGAGGGTAGAGTGTACGCTGACCTTATCACTCCCTTATGGGGGTAGAGGGGTTGTTTCCGAAAGACCCTCGGCTCAATTATTTTTCTTTTGAGGGGCTTTTGGGCCGGGAAGGGTTGGAATAGCGAGTGGCCGGATGAGCAAGGGAAGCTTAAATTATTAAGAATCCTTAATTGTCTATTTATGTTTCACATACTTGTGTTACCTACAACTAGTGAGCCTTGAAATGAGTACCCATTAATTCGCGATCTCAGAATTACAATCCGAGGCTGTGTTGATGAGATCCTTCAAAATACACGCAACCATGTCAATCCTACACAATTTGGTATCCATGTGGGATCGACACATTTGATTTGGTCAAATGTATCGTGGGTGCTTTGACGAAATCTATGGCGAAGAAGTATATGTTGATTAGGTATTTGTTTTGCTTATGTTCTATATATATTTAGATATTTACTAGAACACTTAGTTTTTATATGAACTATCTTATGGATAAACTACTAAGGGGTCGTTTGGTGATATGTATAAGGGAACTTAATACTGGGATAATTGTTGATAATTGTTGAGTACTCTTGATAATCCCTTATTTGGTTTCAAAGTTTGGCATAGCTCCATTCCAGGATTAGTAATTAGTACTAGGATAAGTTATCCCTATCTTTGGGTGGAATAGTAATATCAGATGACTTATCCCGAGATAAACTAGGTAAAATGATAAAAGTATCCCCTTAAACCCTATTTGTATATCACTCTTTAGTTTTCATATTCATGTATATTCACATCATTTTTGATATGATGCATAATAACATTCACAATCTTCACTACTCATTATCTTTATGACGATTCTTCATATTTTTCCATTAAAAATTCACACTTTATAAATATAATTCTTACTTATGAATATATTATATGCTGTATTCATTTAACCAATTTTTATCTTTATTCATATTTTGATTTCTCTACTGCTAGATTACATGTTTTTAATTAATTATTCCTTTAGTCACTTGAAATTTTGTATTTTATATATCAATTAAAATGAAGTTTAACTTTAATATTTTACAGTTTAAGAGTGATATGTGTTTAAGTGAAGTGACATAAATAATAAAATGAAAGTTTTATTTTTAAGCTAAATAATATGGAAGTTTTTATTTCATAAATAAAATAAGATGAGAACTTTATTTTTGAACACATACGGCACAATCATGGAAATAAACACACAAAAATATTAAGTCAAATAAGATGAAATTTTTATTTTTAGGAATAAATTACCAAAGCTTGCAAAGAAAATATAAAAAACTGGGTATTTCTATAAACAAATAATTTGTTCTTAGAAAATATGCGATGCATATCATTTTGAATATAACAAACGAGACAGGATAAGAGATAATCCTAGCATAACTAATCCTAGCATAACTTATCCCAACATAATGTTTCTTAGCATAACTTGTGAGTATATCTTTCACACATTAATTTCAGAAAATCAGACCCTGACATGCAACTAAGGAGCAAACATGACATACTTACAATTTTATCACAAACACATAAAGGAAATACCTGAACTTTTCTTCAAAGACATTCTTAACCTATGTAAATGGCCGGTACTTAACCAAAGAGCTTGTTATGCCAGAAATCGATAGGCTTCAACTGGATTACCCAGCTTCGGCATAATAAACCTAGAAAATATATTGACTTGCCGGAAAAGGTTTTTAAGTTTTGAAGCTTTGCTATCTCTGGTGGAGTCTAGCTAGACAATTTACAATTGATAGGCATCAAGCCAGATTAGTTGTTGTAAGTTCACTATTTTTGGGTGGTATCTTCAACAAAAAGGAAGTATTGTAGTATCTGGTATAGAGTTTAGTTTCCGAAGTGTCCAATGATTTTCGATCGCTGGTGGTATCTCGGTGTCCAACTCATTTTCAAAAAAGCACAAGGCAATGTCACCCACATTTGGTGACTGTTAGGGGTCATTTGGTTTGAAGTTATGATTAAATTAATTATGATGGGATAAGTTATACTGTGATTAGTAATGATGGATTAGTTATGTTGGGATTGTTCATTCTGAGATTATTTCTTATTGATGGTTTGGTTATATTCAAAATAGTGTGCATTGCATAAATTTTAAGAAGAAGTTGTTTGTTTACAAAAATAACCTTCACTTTGTTAGTTTTTTACATTTCTTTGCAAGTTTTACTTATTCATTCTTAAAAATAATACTTTCATCTTATTTCACTTAAATATTTTTGTGTGTGCATTCTCATGATGGTATAAAATGTATTTTAAAATAAAATCTTTCTTCTTATTTAGGCTAAATAGAACTTCCATCTTATGTTAGTTAAAGTAAATGAGTATTTATTATTTGTATTGCTTCATTTGAGAGCATATCTCTTAAATAGTAACATATTAAAATTAACTCCATTTTAATTGATGTACAAAATACAAGCTTTCAAGTGACTAAAATAATATACAATTAAATATATGTAATTCAACTGTAGGGAAATCAAAATATAAGTAACCATTAGAACTAGGCAAATAAATTCATAAACAAAAATTATATTTGTACAATGTAATTATCTAATAGACAAATATAAAGAATTATCATAACAATAAGAAGTGGTGAAGGTTGTGAATGTCATATTGTACATGGTATTAAAAATAATGTGAATATACATGAATGTGAAAAGTGATATATAAAAAGTATTTAAAGAGATATCTTTGTCATTTTATCTCGAAATTACAATTCCAGCCAAAGATTGGGATAACTTTATCCCCATACTAATTATTAACCTTGAGATAAGTTATCCTAAACTTCGTAACTAAACAAGGAATTAAATGTTACTCAAAATTTATACCGGGATTAACTCTCGTTATCCTATATACCAAACAACCCCTCATTGTTGTGTTCAATAGGCACAATTTGCACGTACTTCAGGTGTTCCGTTGGTCGCTCTCATCTAAAAGAAAGTTTTTGTCAAGTTCAAGGTGCTATCTCGGTATTTTGACTTTTTATTCATGTCATGAAATTAAAATGGAGAGAAAAACCATTAAGAACGAGTCAGTTTTTTTTTGACAATTGGTAAGTAGTATTCTTCAATGAGAAATAGAAAAGGAGGGGTTTCTATATTCCCTCTTGGTGCTCTCTCTGTAATGAGACTAGGAAACCAACAACCATTTGTTCCTCCGTTGCAAAGTCACAACACAATTGTGGAACCTTTTTTTTTGTTTTACACATACAGAATGCCTGAGCATACAACAAAACTACTTGGTTGCTGGATCAACAGAGGGGGAAGAAAATCTAAGAAAAAGTGGTGGAGTATAATGCCATCAAGCATCTGGTGGTGTATTTGGAAAGAATGAAATAACATATGCTATGATAACAAAGCTAATTCAATAGAAAGTCAAATAGAACTGCTTGACTACTTCTTATTTTTGGTGCAAAGAGGAAGGGATAAAAGAAGCTGCACAAATTTTAGATTTTATAGGCACTTTGTAATTTATTAGCCTTTTGTTTTTTTCTCTTGTTGGAAACTAATTTTTGGAGGTCTCCAACATATCCTTAATGCTGATGAATACAATATTATCTTTATCAGAAAAAAAAAGATTCGATAAACTCAGAAGAAACTTCCTTTTGAATACAATGATGGAGCCCTTTACTTCTTTGCCTTTTTTCCAAAGGAAGTCTCTTCTGAGTTTATCTAAAAAAAAAATTGATAAAGATAATGTTGTATACATCAGCATCAAGGATATGTTGGAGACCTTCAATAATTAGTTTCCCACAGGAGAAAAAACAAAGGTGATGCTAATAGATTACAAAGTGCCTATAAAATCCAAAATTTGTGCAGCTTCTTCTATTCCTTCCTCTTTACACTAAAAATAAAAAGTAGTCAAGCAGAGTTCCATTTTACTTTCTCTATTGGATTAGCTTTGCTATCATAACATCTGCTATTTCTTTCTTTCCAAATACACCGCCAAATGCATGATGTTATTATACTCCACTTTTTCTTAGATTTTCTCCCCCCTCTGTTGATCCAACAACTAAGTAGATCTGTTGTATGCTCAGGCATAAACCATTTTGTATGTGCTAGTCCCAAAAAAATGTACCACAATTGTGTTGTCACTTCGCAATGGAGGAACAAATGGTTGTTGGTTTCCTCAGTCTCATTACAGAGAGAGCACTAAGAGGCAACATAGAAACCCCTCCTTTTCAATTTCTCATGTGTGGAGCATGCTCTTCTGGCAACCAACCAAGAGAAACACTTTACCTTGGTTGGCACCTTGTTCCTCCAAATCTGCTTCCAGGGGCCAAGCTTACCACCTGGATGCTCCTTCACCTCCTTAATATATAGCTTGTTAACAGAAAGGCTACCATCTCTTGAGTGTTTCCATATGATAGAATCTTTTTCTGCCGATAACCCATTGAGAACATGTAAGTCATTTAAATGCCTTCTAAACACAATATTCCATCCATAAATAGACCAAACCCCAGCCACTGTTTCGTCCGGATTTGTACACAAGGAGAATAGGTCAGGAAATAATATTATCAGTGTCTCATTTCCATTCTAATTCTCTTTCCAGAATAGGATTCTCGTCCCGTTTCCCACCGTGTAGACTATGTTTCTACTTAGATCGTCCACAAATTTCTTATTGTTCTCCAAACTGACACCCCATAACTGCTATTCACAGAGTTGGAGACCCAATTTCCATTCAACCCGTACTTGTTGACTATCACCTCCCTCCATAGTGCTTCTTCCTTAGTGTTGAACCTCCATTGCCATTTTGACAAGAGACATCTTTTCTGCAACCCCAAGTTTCTGATTCTAAGTCCACCAGATTGCTTATGTAACTGTGCAAGATTGTTTATGTAACTGTGCAGTCTGCTACTTGACTATATGCAAACCCTTCCCTTCTTTATTGCCTTCCACAAGAAATCTGTTCTCAGTTTGTCAAGTCTTTCTTCCACTTTGGCAGGCATAGGGAATAAAGACATAACATAAGTTGGAAGAGAGTCCAACACAGAGTTTACTGAAGTGACTCTCCCTCCCAAAGAGATATACTGAGCTTTCCAATTGGCCAATTTCTTCTCTGTCTTTTCAATTATGCCGCCCCAAATTTCTAGCTCCTTGTGATTGTGCCCCAATGGCATGCCCAAGTAAGTAGTGGGAAGCTGTTCTACTTTACACCCAATATCCTTGCCAGGCTCTGAAGTTGAGGAACTTCTTTAATTGGAAAGATGCTGCTTTTCCTCCAATTTATAGATAAACCCGAGACTGCTTCAAAAACCACCAGAGTCACTCTTATAAAGGCAACCTGTTCAGCCTTGGCTTCACTGGAAGTAATTGTGTCATCTGCATAAATCAGATGACAAATCTGCATTTCCCTTCCTCAAGAGTTGCGGACCTTGAAGCCTTTTAACCAATTGTTTTGGGTAGCTACTCTCATCATACTATTGTAGCCCTCCATCGCTTGGATGAAAAGAAAGGAGAGAGTGGGTCTCCCTGCCTTAAACCCCTTTCGGATGGGAAAAAACCAGCAGGTTCTCCATTCACTAATTGGAAAACCTAACAGTTTTTATGCAATAATCGATCCAATTCAGCTATTTCTCCCCAAAACCCATTTGTTTTAGAATCCTGATAAGGAATCCCAATTGACATGATCGTAAGCCTTCTCTATGTCCAGCTTGCTCATAATTCCTGGATCATCTCCTTTAACTCTGATGTCCACACACTCACTTGCTATAAGTGCTGCATCAATAATCTGCCTACCTTTTATGAAGGCCATCTGGTGTTTAATAACAAGCTCACTGATCACTTTCTTTAACCTTTGTGCTAGTATCTTAGCAAATGATCTTGTATATTCCACCTATCAAACTTATAGGTCTGAAATCTCTCAGTTCCACAACTCCCACCTTCTTGGGGAACAATGCCACATAGGTTGCATTTAGGCTCTTCTCAAACACTTGCTCGGAGCCGGGTATGGGTATGCGATACAAGTGTGGATCTGAAGGTTGGATTTTTTATCATATAAATTTTAGGATTCAGGGTACGGATCCGAGATATCTATTATCTTATTTATAAGATATCTCCTGTAATACCAAAATTTTATCTTATTTTATATAGCTATATATATGAATATAAACCCAAAAAATAAACTAAATACCAGATCGATCTATACTTCTTGATTATAAATGCAGTCAAAACACTCAAGTTAAGTTGATTGAATTTGATGTGGATCCCACACCTACATGGCTACACCCACAACCAAATCGATCATGGATGTGTCAAGGATTTTGAAGGGTCCAAGAAACATAGCTCCAATGGACTTCAATTGTTCTTGGCACTTGTGTTTCTTTTGTAATTTTTACAGTTACATGAATGTCAGCAACTCAGCATGTTATGGCACTCTTGAGGCTCGATTGCTCTTAGATTATTCAAATTGGCATATTTCTCCTTGTAGCTTATTCAGTTTCTAATCACACTTATTTATTTGTTCATGTAGGATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAGGTGACCCCTTAAACTTGTTTTTTTTGCTCTCCATTTTTACACTTAAGCCAAGTAAAGTACCTACTGAGCACTTGAAGTGAAGACAAATTTCTTACTTGGTACAGTGTGACACCACTTATGAGAGTGTGCAAATTCATTTTTCAATTTATTTATTTTTTTGACAAGGCATTTTTCAAATTTTTTCTTCAATCTACTAATTTTCCACTGTATCTCGACCGCTGTAGCCGCTGCAAATGGCCTCCAATCCACCGTCACTATGCCACATCCACCGCCATGTAAACTACCTCTATTACTGTCCCACCCAGCTCCTCCTCCACTTTGCGGCATTGGCACCACCGCAAAGCCCAAGCCCAAGCCCAAACTGAAACCGAATGAAAGCCCACACCTTCACCATTTAAGTTCATGTCCATAAGAAACCCATGCAAGTTCTTTCTCCAGTAACCCATGAAATTCTCAAAATTTTAGAACAATTTCAGAGGCAAAAGATAGATTATCTAGGCCCAAGGACCTAATGGGCGTCTATAGTCATCGACGGAGGACAATTGTAAGCTGTGATAGAGGTGGTGTTGTGAGGGAATGAACCAGTGGACATGGCCATTAAAGCACTTTCCTAGTGAGGGACTACAGTGGCGACACAATGCTTGTTGAGTGCCCATGATAAGAGAATCTATCGATTTTCGTCATTGTTTCTCTTTTTCTTTTTGGCGTTTGTTTCTCAGTGATGTGTTTTTCTTACTGGTCTTGCTCTTTTTACAGAGAAAAACACATCGCTGAGAAGTTTTTCATTTAGCTGTCAAAATGAAAAAATAAAATTGGCAATTAGGAGGCTGCCTATATATTCAACCAAAAAAAAAACCGATGCTTGCCATCATAGCATCAAGCTTGCCTGTATTTGTTCTGTGACATGCTTGCCCACACTTAGTGCAATCGTAAACCACTTCTACTCCATATCTTCTTTATGTGAATTTTTTAATTTTAACTGTGTCAAGTTTTCCGAACTCCCCCCTCCCCCTCTATGTTTGGTGACGTAAAATTTTCACCTTATTAGATTACTTTTCCCAGAAGTAAAAAGAGCAAAACCAACATTGTAGTGGTACCCAATTTTTCCATAATAAACCACCTTAACCTGCCAAGCTTGATTATATTTTGTCCTTAATCATAACCAGATCTTACCATCATGCACAAACACAAACTTGACCTTAAATATATCACCCTCTGCGCCAACTTCGAACTGGTTATTCATGTACTTTAATGACAGGCCGAGAAGTGATGTTGGATTCTTGTGTGGAACTGAGGGTTATGGAGAGTCCCAATTGTGATTGCAGGACTAAGAGTAGGTTGTGTAAATACTTGTCAGTTTATGGTTCTTTCTAACGTGCTCTGAAAGTGTTTTTAAGAAAAGGCTGTCTAAATGTGATTTATTTGGAAACTGATAAGAAATTAGGAAATCAGTATCTTTGAGAGAAAGGAAAAAATGAGAACATTTCGTTTTGCTGAGAGGAACTTCAGGTTATTGCATTCTAAGAGTGTCAAATTGAGATGCATGGTCTGAAAGTTTGACACAAATCCTTTCTTGTCATTTTGCAGAACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCAAAC</genome_strand>
        <mrna_strand>TGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAG....................................................................................................................TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614992" ref_strand="-" ref_description="SGN-E614992 [64786]">
      <seq>atggagggagatgccaagggatctgcaagggttggtgatgcatctgttagaaaagatgtagttggaagtcagcttgggtccaatacgcagttcatgtatgaaggttcttttgcacaaggcttagactatggaaactcccaattatgaattttaagatgaacaaagaactttggatgcataccaaaaaaaagctgaatacatagaacagtggttagtcttttgctggtacaagatgccagccagggtttctcttcttgctgatatctgtgttaaactgtcaacagcaatgtttgaggactagacacctaaaggactcctactgtttctgcaaatatttttgtttgctatactttgattttaattctcttccgctctgtacataccgttgggttttgaatgtcacttggaataaaccatctattatagtttgtacaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="48284" stop="38436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48083" g_stop="48078" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48077" i_stop="47983" i_length="95">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47982" g_stop="47899" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="90" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47782" g_stop="47719" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="154" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40612" g_stop="40563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="203" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40562" i_stop="38976" i_length="1587">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38975" g_stop="38736" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="434" r_length="231" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="452"/>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E614992" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614992" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48083" e_stop="48078"/>
          <exon e_start="47982" e_stop="47899"/>
          <exon e_start="47782" e_stop="47719"/>
          <exon e_start="40612" e_stop="40563"/>
          <exon e_start="38975" e_stop="38736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGTACACAGTTCTCCACATCACTGAGATAGATTTCCTTATTTTCTGCATCTCTGATTTTTCATTAAAATTGTATTGTGATTTGAAACTAATATCAGGGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAGGTAAGGTGGTTGTATTTTATTTTGTTCTTTCTTTAGCTCATTTGCTTCACCATTTAGTAGTTCTTACGTGGATATTATCTAATAAGACACGCAATACTTCTTGTGGAAATTGACAGTTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAAGTAAGTTTTTCTCGTACCCAAAAAGTCTTTTTAATGATGTGCTTTTCATCTTTAAATGTTTTACAGGCAGCTTCTCTTCAATAAACTCAACCCTCATGTCATGACTTAGCAGGATCTCTTTTGCGTTTTGTGACACATTTTCTATATCAGGCAACAAACAGTTTGTTGCTCTGTTGCATCAGTCGATGCTACATTTTAGAAAGTAACATTGACTCATTTATAAATAAACCTAGAGCCAACAAATTTCCAAAACTGATTAACATTATTTTATTTCCATTACAATGATTGCTCCAGCCAAACAGATTCACTAAGAAACTAGCCTTCATGGAAGAAATGGTAGCTGGAACTCCCTCAACTTAGCTTTGGTCCTTCCCTTCCATGATGTCCAAAATATAGAGTTTTTGATGGATTGTCAAAGCATTCTCTCTATCTTTGCAGTATGCCTTAATGCAACACTTATAGAAATAAGTCATTGTCGAAATAAGAAGCAATTAACTCCCTTATATATTCAAGTAAAATATTGCAAAGAAGCCAAAATACTGCTGTTTCCACAAGTCCGATAATATATGCAAATTACAACAACAACATACCCAGTAAAATCCCACTAAGTGGGGTCTAGGGAGGGTAGAGTGTACGCTGACCTTATCACTCCCTTATGGGGGTAGAGGGGTTGTTTCCGAAAGACCCTCGGCTCAATTATTTTTCTTTTGAGGGGCTTTTGGGCCGGGAAGGGTTGGAATAGCGAGTGGCCGGATGAGCAAGGGAAGCTTAAATTATTAAGAATCCTTAATTGTCTATTTATGTTTCACATACTTGTGTTACCTACAACTAGTGAGCCTTGAAATGAGTACCCATTAATTCGCGATCTCAGAATTACAATCCGAGGCTGTGTTGATGAGATCCTTCAAAATACACGCAACCATGTCAATCCTACACAATTTGGTATCCATGTGGGATCGACACATTTGATTTGGTCAAATGTATCGTGGGTGCTTTGACGAAATCTATGGCGAAGAAGTATATGTTGATTAGGTATTTGTTTTGCTTATGTTCTATATATATTTAGATATTTACTAGAACACTTAGTTTTTATATGAACTATCTTATGGATAAACTACTAAGGGGTCGTTTGGTGATATGTATAAGGGAACTTAATACTGGGATAATTGTTGATAATTGTTGAGTACTCTTGATAATCCCTTATTTGGTTTCAAAGTTTGGCATAGCTCCATTCCAGGATTAGTAATTAGTACTAGGATAAGTTATCCCTATCTTTGGGTGGAATAGTAATATCAGATGACTTATCCCGAGATAAACTAGGTAAAATGATAAAAGTATCCCCTTAAACCCTATTTGTATATCACTCTTTAGTTTTCATATTCATGTATATTCACATCATTTTTGATATGATGCATAATAACATTCACAATCTTCACTACTCATTATCTTTATGACGATTCTTCATATTTTTCCATTAAAAATTCACACTTTATAAATATAATTCTTACTTATGAATATATTATATGCTGTATTCATTTAACCAATTTTTATCTTTATTCATATTTTGATTTCTCTACTGCTAGATTACATGTTTTTAATTAATTATTCCTTTAGTCACTTGAAATTTTGTATTTTATATATCAATTAAAATGAAGTTTAACTTTAATATTTTACAGTTTAAGAGTGATATGTGTTTAAGTGAAGTGACATAAATAATAAAATGAAAGTTTTATTTTTAAGCTAAATAATATGGAAGTTTTTATTTCATAAATAAAATAAGATGAGAACTTTATTTTTGAACACATACGGCACAATCATGGAAATAAACACACAAAAATATTAAGTCAAATAAGATGAAATTTTTATTTTTAGGAATAAATTACCAAAGCTTGCAAAGAAAATATAAAAAACTGGGTATTTCTATAAACAAATAATTTGTTCTTAGAAAATATGCGATGCATATCATTTTGAATATAACAAACGAGACAGGATAAGAGATAATCCTAGCATAACTAATCCTAGCATAACTTATCCCAACATAATGTTTCTTAGCATAACTTGTGAGTATATCTTTCACACATTAATTTCAGAAAATCAGACCCTGACATGCAACTAAGGAGCAAACATGACATACTTACAATTTTATCACAAACACATAAAGGAAATACCTGAACTTTTCTTCAAAGACATTCTTAACCTATGTAAATGGCCGGTACTTAACCAAAGAGCTTGTTATGCCAGAAATCGATAGGCTTCAACTGGATTACCCAGCTTCGGCATAATAAACCTAGAAAATATATTGACTTGCCGGAAAAGGTTTTTAAGTTTTGAAGCTTTGCTATCTCTGGTGGAGTCTAGCTAGACAATTTACAATTGATAGGCATCAAGCCAGATTAGTTGTTGTAAGTTCACTATTTTTGGGTGGTATCTTCAACAAAAAGGAAGTATTGTAGTATCTGGTATAGAGTTTAGTTTCCGAAGTGTCCAATGATTTTCGATCGCTGGTGGTATCTCGGTGTCCAACTCATTTTCAAAAAAGCACAAGGCAATGTCACCCACATTTGGTGACTGTTAGGGGTCATTTGGTTTGAAGTTATGATTAAATTAATTATGATGGGATAAGTTATACTGTGATTAGTAATGATGGATTAGTTATGTTGGGATTGTTCATTCTGAGATTATTTCTTATTGATGGTTTGGTTATATTCAAAATAGTGTGCATTGCATAAATTTTAAGAAGAAGTTGTTTGTTTACAAAAATAACCTTCACTTTGTTAGTTTTTTACATTTCTTTGCAAGTTTTACTTATTCATTCTTAAAAATAATACTTTCATCTTATTTCACTTAAATATTTTTGTGTGTGCATTCTCATGATGGTATAAAATGTATTTTAAAATAAAATCTTTCTTCTTATTTAGGCTAAATAGAACTTCCATCTTATGTTAGTTAAAGTAAATGAGTATTTATTATTTGTATTGCTTCATTTGAGAGCATATCTCTTAAATAGTAACATATTAAAATTAACTCCATTTTAATTGATGTACAAAATACAAGCTTTCAAGTGACTAAAATAATATACAATTAAATATATGTAATTCAACTGTAGGGAAATCAAAATATAAGTAACCATTAGAACTAGGCAAATAAATTCATAAACAAAAATTATATTTGTACAATGTAATTATCTAATAGACAAATATAAAGAATTATCATAACAATAAGAAGTGGTGAAGGTTGTGAATGTCATATTGTACATGGTATTAAAAATAATGTGAATATACATGAATGTGAAAAGTGATATATAAAAAGTATTTAAAGAGATATCTTTGTCATTTTATCTCGAAATTACAATTCCAGCCAAAGATTGGGATAACTTTATCCCCATACTAATTATTAACCTTGAGATAAGTTATCCTAAACTTCGTAACTAAACAAGGAATTAAATGTTACTCAAAATTTATACCGGGATTAACTCTCGTTATCCTATATACCAAACAACCCCTCATTGTTGTGTTCAATAGGCACAATTTGCACGTACTTCAGGTGTTCCGTTGGTCGCTCTCATCTAAAAGAAAGTTTTTGTCAAGTTCAAGGTGCTATCTCGGTATTTTGACTTTTTATTCATGTCATGAAATTAAAATGGAGAGAAAAACCATTAAGAACGAGTCAGTTTTTTTTTGACAATTGGTAAGTAGTATTCTTCAATGAGAAATAGAAAAGGAGGGGTTTCTATATTCCCTCTTGGTGCTCTCTCTGTAATGAGACTAGGAAACCAACAACCATTTGTTCCTCCGTTGCAAAGTCACAACACAATTGTGGAACCTTTTTTTTTGTTTTACACATACAGAATGCCTGAGCATACAACAAAACTACTTGGTTGCTGGATCAACAGAGGGGGAAGAAAATCTAAGAAAAAGTGGTGGAGTATAATGCCATCAAGCATCTGGTGGTGTATTTGGAAAGAATGAAATAACATATGCTATGATAACAAAGCTAATTCAATAGAAAGTCAAATAGAACTGCTTGACTACTTCTTATTTTTGGTGCAAAGAGGAAGGGATAAAAGAAGCTGCACAAATTTTAGATTTTATAGGCACTTTGTAATTTATTAGCCTTTTGTTTTTTTCTCTTGTTGGAAACTAATTTTTGGAGGTCTCCAACATATCCTTAATGCTGATGAATACAATATTATCTTTATCAGAAAAAAAAAGATTCGATAAACTCAGAAGAAACTTCCTTTTGAATACAATGATGGAGCCCTTTACTTCTTTGCCTTTTTTCCAAAGGAAGTCTCTTCTGAGTTTATCTAAAAAAAAAATTGATAAAGATAATGTTGTATACATCAGCATCAAGGATATGTTGGAGACCTTCAATAATTAGTTTCCCACAGGAGAAAAAACAAAGGTGATGCTAATAGATTACAAAGTGCCTATAAAATCCAAAATTTGTGCAGCTTCTTCTATTCCTTCCTCTTTACACTAAAAATAAAAAGTAGTCAAGCAGAGTTCCATTTTACTTTCTCTATTGGATTAGCTTTGCTATCATAACATCTGCTATTTCTTTCTTTCCAAATACACCGCCAAATGCATGATGTTATTATACTCCACTTTTTCTTAGATTTTCTCCCCCCTCTGTTGATCCAACAACTAAGTAGATCTGTTGTATGCTCAGGCATAAACCATTTTGTATGTGCTAGTCCCAAAAAAATGTACCACAATTGTGTTGTCACTTCGCAATGGAGGAACAAATGGTTGTTGGTTTCCTCAGTCTCATTACAGAGAGAGCACTAAGAGGCAACATAGAAACCCCTCCTTTTCAATTTCTCATGTGTGGAGCATGCTCTTCTGGCAACCAACCAAGAGAAACACTTTACCTTGGTTGGCACCTTGTTCCTCCAAATCTGCTTCCAGGGGCCAAGCTTACCACCTGGATGCTCCTTCACCTCCTTAATATATAGCTTGTTAACAGAAAGGCTACCATCTCTTGAGTGTTTCCATATGATAGAATCTTTTTCTGCCGATAACCCATTGAGAACATGTAAGTCATTTAAATGCCTTCTAAACACAATATTCCATCCATAAATAGACCAAACCCCAGCCACTGTTTCGTCCGGATTTGTACACAAGGAGAATAGGTCAGGAAATAATATTATCAGTGTCTCATTTCCATTCTAATTCTCTTTCCAGAATAGGATTCTCGTCCCGTTTCCCACCGTGTAGACTATGTTTCTACTTAGATCGTCCACAAATTTCTTATTGTTCTCCAAACTGACACCCCATAACTGCTATTCACAGAGTTGGAGACCCAATTTCCATTCAACCCGTACTTGTTGACTATCACCTCCCTCCATAGTGCTTCTTCCTTAGTGTTGAACCTCCATTGCCATTTTGACAAGAGACATCTTTTCTGCAACCCCAAGTTTCTGATTCTAAGTCCACCAGATTGCTTATGTAACTGTGCAAGATTGTTTATGTAACTGTGCAGTCTGCTACTTGACTATATGCAAACCCTTCCCTTCTTTATTGCCTTCCACAAGAAATCTGTTCTCAGTTTGTCAAGTCTTTCTTCCACTTTGGCAGGCATAGGGAATAAAGACATAACATAAGTTGGAAGAGAGTCCAACACAGAGTTTACTGAAGTGACTCTCCCTCCCAAAGAGATATACTGAGCTTTCCAATTGGCCAATTTCTTCTCTGTCTTTTCAATTATGCCGCCCCAAATTTCTAGCTCCTTGTGATTGTGCCCCAATGGCATGCCCAAGTAAGTAGTGGGAAGCTGTTCTACTTTACACCCAATATCCTTGCCAGGCTCTGAAGTTGAGGAACTTCTTTAATTGGAAAGATGCTGCTTTTCCTCCAATTTATAGATAAACCCGAGACTGCTTCAAAAACCACCAGAGTCACTCTTATAAAGGCAACCTGTTCAGCCTTGGCTTCACTGGAAGTAATTGTGTCATCTGCATAAATCAGATGACAAATCTGCATTTCCCTTCCTCAAGAGTTGCGGACCTTGAAGCCTTTTAACCAATTGTTTTGGGTAGCTACTCTCATCATACTATTGTAGCCCTCCATCGCTTGGATGAAAAGAAAGGAGAGAGTGGGTCTCCCTGCCTTAAACCCCTTTCGGATGGGAAAAAACCAGCAGGTTCTCCATTCACTAATTGGAAAACCTAACAGTTTTTATGCAATAATCGATCCAATTCAGCTATTTCTCCCCAAAACCCATTTGTTTTAGAATCCTGATAAGGAATCCCAATTGACATGATCGTAAGCCTTCTCTATGTCCAGCTTGCTCATAATTCCTGGATCATCTCCTTTAACTCTGATGTCCACACACTCACTTGCTATAAGTGCTGCATCAATAATCTGCCTACCTTTTATGAAGGCCATCTGGTGTTTAATAACAAGCTCACTGATCACTTTCTTTAACCTTTGTGCTAGTATCTTAGCAAATGATCTTGTATATTCCACCTATCAAACTTATAGGTCTGAAATCTCTCAGTTCCACAACTCCCACCTTCTTGGGGAACAATGCCACATAGGTTGCATTTAGGCTCTTCTCAAACACTTGCTCGGAGCCGGGTATGGGTATGCGATACAAGTGTGGATCTGAAGGTTGGATTTTTTATCATATAAATTTTAGGATTCAGGGTACGGATCCGAGATATCTATTATCTTATTTATAAGATATCTCCTGTAATACCAAAATTTTATCTTATTTTATATAGCTATATATATGAATATAAACCCAAAAAATAAACTAAATACCAGATCGATCTATACTTCTTGATTATAAATGCAGTCAAAACACTCAAGTTAAGTTGATTGAATTTGATGTGGATCCCACACCTACATGGCTACACCCACAACCAAATCGATCATGGATGTGTCAAGGATTTTGAAGGGTCCAAGAAACATAGCTCCAATGGACTTCAATTGTTCTTGGCACTTGTGTTTCTTTTGTAATTTTTACAGTTACATGAATGTCAGCAACTCAGCATGTTATGGCACTCTTGAGGCTCGATTGCTCTTAGATTATTCAAATTGGCATATTTCTCCTTGTAGCTTATTCAGTTTCTAATCACACTTATTTATTTGTTCATGTAGGATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAGGTGACCCCTTAAACTTGTTTTTTTTGCTCTCCATTTTTACACTTAAGCCAAGTAAAGTACCTACTGAGCACTTGAAGTGAAGACAAATTTCTTACTTGGTACAGTGTGACACCACTTATGAGAGTGTGCAAATTCATTTTTCAATTTATTTATTTTTTTGACAAGGCATTTTTCAAATTTTTTCTTCAATCTACTAATTTTCCACTGTATCTCGACCGCTGTAGCCGCTGCAAATGGCCTCCAATCCACCGTCACTATGCCACATCCACCGCCATGTAAACTACCTCTATTACTGTCCCACCCAGCTCCTCCTCCACTTTGCGGCATTGGCACCACCGCAAAGCCCAAGCCCAAGCCCAAACTGAAACCGAATGAAAGCCCACACCTTCACCATTTAAGTTCATGTCCATAAGAAACCCATGCAAGTTCTTTCTCCAGTAACCCATGAAATTCTCAAAATTTTAGAACAATTTCAGAGGCAAAAGATAGATTATCTAGGCCCAAGGACCTAATGGGCGTCTATAGTCATCGACGGAGGACAATTGTAAGCTGTGATAGAGGTGGTGTTGTGAGGGAATGAACCAGTGGACATGGCCATTAAAGCACTTTCCTAGTGAGGGACTACAGTGGCGACACAATGCTTGTTGAGTGCCCATGATAAGAGAATCTATCGATTTTCGTCATTGTTTCTCTTTTTCTTTTTGGCGTTTGTTTCTCAGTGATGTGTTTTTCTTACTGGTCTTGCTCTTTTTACAGAGAAAAACACATCGCTGAGAAGTTTTTCATTTAGCTGTCAAAATGAAAAAATAAAATTGGCAATTAGGAGGCTGCCTATATATTCAACCAAAAAAAAAACCGATGCTTGCCATCATAGCATCAAGCTTGCCTGTATTTGTTCTGTGACATGCTTGCCCACACTTAGTGCAATCGTAAACCACTTCTACTCCATATCTTCTTTATGTGAATTTTTTAATTTTAACTGTGTCAAGTTTTCCGAACTCCCCCCTCCCCCTCTATGTTTGGTGACGTAAAATTTTCACCTTATTAGATTACTTTTCCCAGAAGTAAAAAGAGCAAAACCAACATTGTAGTGGTACCCAATTTTTCCATAATAAACCACCTTAACCTGCCAAGCTTGATTATATTTTGTCCTTAATCATAACCAGATCTTACCATCATGCACAAACACAAACTTGACCTTAAATATATCACCCTCTGCGCCAACTTCGAACTGGTTATTCATGTACTTTAATGACAGGCCGAGAAGTGATGTTGGATTCTTGTGTGGAACTGAGGGTTATGGAGAGTCCCAATTGTGATTGCAGGACTAAGAGTAGGTTGTGTAAATACTTGTCAGTTTATGGTTCTTTCTAACGTGCTCTGAAAGTGTTTTTAAGAAAAGGCTGTCTAAATGTGATTTATTTGGAAACTGATAAGAAATTAGGAAATCAGTATCTTTGAGAGAAAGGAAAAAATGAGAACATTTCGTTTTGCTGAGAGGAACTTCAGGTTATTGCATTCTAAGAGTGTCAAATTGAGATGCATGGTCTGAAAGTTTGACACAAATCCTTTCTTGTCATTTTGCAGAACAGTGGTTAGTCTTTTGCTGGTACAAGAT----GCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACA</genome_strand>
        <mrna_strand>ATGGAG...............................................................................................GGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGAAGTCAGCTTGGGTCCAATACGCAG....................................................................................................................TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACAAAGAACTTTGGATGCATA-CCAAAAAAAAGCTGAATACATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAGCA--------A--TGTTT--GAGGACTAGACACCTAAAGGACTCCTACT-GTTTCTGCAAATATTTTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCGTTGGGTTTTGAATGTCACTTGGAATAAACCATCTATTATAGTTTGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425837" ref_strand="-" ref_description="SGN-E425837 [STM-45-L19]">
      <seq>cggcggaagccatgagangtggccgtgacccgagtcctccagtccaacttgcgagaacaggataggtacctaccgatcgctaatattggacgcataatgaaaaaggcattgcctgctaatggaaagatcgcaaaggattctaaggacactgttcaggaatgtgtatctgagttcatcagttttattactagcgaagctagtgacaagtgtcagaaagagaagagaaagacgatcaacggagatgatttactatcagccctggctaccttgggatttgaggactacattgaaccactgaaggtctatttgactcgatacagagagatggagggagatgccaagggatctgcaagggttggtgatgcatctgttagaaaagatgtagttggaagtcagcttgggtccaatacgcagttcatgtatgaaggttcttttgcacaaggcttagactatggaaactcccaattatgaattttaagatgaacaaagaactttggatgcataccaaaaaaaagctgaatacatagaacagtggttagtcttttgctggtacaagatgccagccagggtttctcttcttgctgatctctgtgttaaactgtcaacagcaatgtttgaggactagacacctaaaggactcctactaatttctgcaaatatttttgtttgctatactttgattttaattctcttccgctctgtacataccgttgggttttgaatatcacttggaataaaccatctaaaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="51432" stop="38442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51132" g_stop="50941" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50940" i_stop="48545" i_length="2396">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48544" g_stop="48415" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="324" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48414" i_stop="48084" i_length="331">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.359" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48083" g_stop="48078" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="330" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48077" i_stop="47983" i_length="95">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47982" g_stop="47899" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="414" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47782" g_stop="47719" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="478" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40612" g_stop="40563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="527" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40562" i_stop="38976" i_length="1587">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38975" g_stop="38741" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="754" r_length="227" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E425837" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425837" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51132" e_stop="50941"/>
          <exon e_start="48544" e_stop="48415"/>
          <exon e_start="48083" e_stop="48078"/>
          <exon e_start="47982" e_stop="47899"/>
          <exon e_start="47782" e_stop="47719"/>
          <exon e_start="40612" e_stop="40563"/>
          <exon e_start="38975" e_stop="38741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGGAAGCCATGAGA-GTGGCGGTGACCCGAGTCCT-CAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAGAAGGCATTGCCTGCTAATGGGAAGATCGCTAAGGATTCTAAAGACACGGTTCAGGAATGCGTATCTGAGTTCATCAGTTTTATTACTAGCGAGTAAGCTTCTATTTCGTTTCATGGTTCGATTCTATATGTTAAAATGCACTAATGCGAATTTTATAGTAAGTTTATAACTGAATCATAAAGATCAACTGAGGTTTTGTGGCATTGTACTGGGTAAGTTTCGAAGTTTTAAATCAGATGTTTATAATATTTCTAATTTATCATGTCAATAAATTTTGTTGGAATTCCTTTTTAGACACATACAGTTCCATTTAGAGTTACTATTTTGTCTGTATTGCTTCAGTGAATTATAGAAATGTGTTATTTACCTGTATTCAGTGTTCAATTGTACATTCTGAAATGGAGGAATGTGATTTTTATAGTAAGTTTATACTAATTCTTAAAGATCGCTATGTCAATTGAGGTTTTGTGGCATTGTACTGGGTAACTTTTGAAGTTTTAAACTCTATGCATGGATGTTTATAATTTTGGTAGTCTATCATTTCAAGAAATTTTATTGGAATTCCTTTAGGCACAGATGGTTCCATTTTAGAGTTTCTATTTTATTTTTGTTTTGTGTTTTTGATGTGTATGGAGATGGATAACTACTTCGTATACCTTTTTAGCTCAAGAGTCTCTAAGAGTTATAATTTTTCGTGGTGTTGCTTGTGTTTCCTTTCCCAAATTTTTTATACATGATAAAGATAACCCTTAGAAAGATTTCTTTCAACATCAATAGGATGTTTTGTTGGCAGTGTTCAGGAAAGCGATGAAGCGAAGTGATGCGAGCCTTCTACGCTTCACAGACTAGAATGAGTATGTGTGCGCTTCATCGCTTAAAGCGAGTGCTTCATCGCCTAAAGCGTGAAGCATAGCCTTATCGCTTTTTACCGCTTCACGCTTCCCTGAACACTGCTTGTTGGTGTTTAGTCCATAGCAATTAACAAAGGTTGGTAGGTAATAGCTTACTTTATGATATATGGTTATGACTCTTCCATGAATTACATGACAACCAAAACTCCCCACTGGAGATTCCATCCCACTCTTCCTTGGCTGCTGTAATTGTTTGTTTAATCCCTTTTCATTTTTCATGCCTGCCACCTCCTCAATGATTAGCAATATCAAGCTGAATTGGGCATGGCATTTACGAGGCTGGATAATCATAGACATGTTGTCACCTTCTGCTCCGTACGGGGAAAAAGAGCACAATGAAAGATGTGTTGACAATTAGTAGACAAGGGAATCATAAATGCATGGTGTCCTTAATATGGGAAAACACATCTATTTGAGTGGAAATATTACGGGAAAAGAGGACTTGACAATACGATAGGTAGGGTAGAGTTACCTGCCATTTTAATGAAGCCCTTAAGACAAACATGTAAAAAGGGGAGGACAAGAATAGTAGTACATGGAGGAGAAGTACGGAGGGAGGAATGCAAAAATAAAATGGAAATAAGGTGGGCATGGAAGCATGTTATCAACCACTTTCGATGGCAAATCCATAAAAAAGAACGACACGGTGTGTGTGACAATTCTTCCCCATGTTCACTAAGAAAATTTGGAATGCAATGCATTGTCAGAGACTTTATTGTTTGTACTTGTGACATTTTTTAAGAATGGATTATAGTTGACCCAAATTGAATAGCTGCTTTTGCTTTTCGGTTTGTGAGTTAAAAAAAAGGCTATTGTCAAGAAAACCCTTATTTCTTTGTTTTTCGTAGGAAAATATCCCCAATAGTAGAAGGTATCCAGTGCTGCAATTCTGCCTGTGATTGTGCTGAGTTGCTCTGTGCATTGTTATTCAAGTGATCATGCCATACCTAGTTGTTTATATCCCTGTTTAGATGTTCGCACTGCAGTTCCTTCGCTAAAAATACAAGTCCTCTTTCCTATTTTACCTTTCTTTGACAAGGTTACATGTCCTAATTATGCCATTCTATCAAATTCATGGCATGCTAGCTTTCCACTAGTCTGAGTTCAGAGTCGTGTGTGTATCAGAATTTGGGAGATCAAATATTTTCCTTTTACTGTTAGGTCTCGTAGCTCATACGCAATGTCATTTTGAACATGATATTTACCTTTCTTTAAAAGTATCTACGTAGCTAATATCTTATGGATGGTATTGTTTTACTGCTATTTCTTTTTCTGGATCATATACGTTTACATTAGATGTTGTTTTACCAGTTTCAATAAAAGTTGTATATTTGATCTAGATGTCTTTATATAAATAATATATGGAAAGACGTTGCCAGTATTTGGAAGTTCGAGTCCAAATATATGTGTGGGTACTTGTGTAGAAGTAGAAGACATGTGTTACATTTTCAAATGTTTGTTGTCAGAGGGTGGACTTCCATACGTATACATACTGAGATTTAGTAGAATGATGACATTTGGAAGTAACAACCACTCTTCTTGCTTGTTTTTCAAATGAGTTCTCTTTTATTTTATAGAGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGATACAGAGAGGTAAATGCAACTCTTCTTCACGCCCTTAGTGGTTTTGGGACTGGTTTCTCATATGAACCGCTTTATTGTCTTTATTTTATGTTCTATTAGGCTTCCTCATTATTTGGTTTGCGAGGAAATTGATAAAAGAATATATGGACTATTGCATTTGCCAATTGCCATCTTCTTAATGTTGCACTGTGTATTTTTGGTTTATATGGACTGCACTATTGTTGTTTTAAGGTTTTGTTCAATTGAGTTTTTTCTCATAATCAACTAAGTAAATGTTGTTTCTTTGGTTCCTGGACAATTTTCTCTGCTGGGTTGCATGGGTCAATCAATGGTGTTGTAGATGGAGGTACACAGTTCTCCACATCACTGAGATAGATTTCCTTATTTTCTGCATCTCTGATTTTTCATTAAAATTGTATTGTGATTTGAAACTAATATCAGGGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAGGTAAGGTGGTTGTATTTTATTTTGTTCTTTCTTTAGCTCATTTGCTTCACCATTTAGTAGTTCTTACGTGGATATTATCTAATAAGACACGCAATACTTCTTGTGGAAATTGACAGTTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAAGTAAGTTTTTCTCGTACCCAAAAAGTCTTTTTAATGATGTGCTTTTCATCTTTAAATGTTTTACAGGCAGCTTCTCTTCAATAAACTCAACCCTCATGTCATGACTTAGCAGGATCTCTTTTGCGTTTTGTGACACATTTTCTATATCAGGCAACAAACAGTTTGTTGCTCTGTTGCATCAGTCGATGCTACATTTTAGAAAGTAACATTGACTCATTTATAAATAAACCTAGAGCCAACAAATTTCCAAAACTGATTAACATTATTTTATTTCCATTACAATGATTGCTCCAGCCAAACAGATTCACTAAGAAACTAGCCTTCATGGAAGAAATGGTAGCTGGAACTCCCTCAACTTAGCTTTGGTCCTTCCCTTCCATGATGTCCAAAATATAGAGTTTTTGATGGATTGTCAAAGCATTCTCTCTATCTTTGCAGTATGCCTTAATGCAACACTTATAGAAATAAGTCATTGTCGAAATAAGAAGCAATTAACTCCCTTATATATTCAAGTAAAATATTGCAAAGAAGCCAAAATACTGCTGTTTCCACAAGTCCGATAATATATGCAAATTACAACAACAACATACCCAGTAAAATCCCACTAAGTGGGGTCTAGGGAGGGTAGAGTGTACGCTGACCTTATCACTCCCTTATGGGGGTAGAGGGGTTGTTTCCGAAAGACCCTCGGCTCAATTATTTTTCTTTTGAGGGGCTTTTGGGCCGGGAAGGGTTGGAATAGCGAGTGGCCGGATGAGCAAGGGAAGCTTAAATTATTAAGAATCCTTAATTGTCTATTTATGTTTCACATACTTGTGTTACCTACAACTAGTGAGCCTTGAAATGAGTACCCATTAATTCGCGATCTCAGAATTACAATCCGAGGCTGTGTTGATGAGATCCTTCAAAATACACGCAACCATGTCAATCCTACACAATTTGGTATCCATGTGGGATCGACACATTTGATTTGGTCAAATGTATCGTGGGTGCTTTGACGAAATCTATGGCGAAGAAGTATATGTTGATTAGGTATTTGTTTTGCTTATGTTCTATATATATTTAGATATTTACTAGAACACTTAGTTTTTATATGAACTATCTTATGGATAAACTACTAAGGGGTCGTTTGGTGATATGTATAAGGGAACTTAATACTGGGATAATTGTTGATAATTGTTGAGTACTCTTGATAATCCCTTATTTGGTTTCAAAGTTTGGCATAGCTCCATTCCAGGATTAGTAATTAGTACTAGGATAAGTTATCCCTATCTTTGGGTGGAATAGTAATATCAGATGACTTATCCCGAGATAAACTAGGTAAAATGATAAAAGTATCCCCTTAAACCCTATTTGTATATCACTCTTTAGTTTTCATATTCATGTATATTCACATCATTTTTGATATGATGCATAATAACATTCACAATCTTCACTACTCATTATCTTTATGACGATTCTTCATATTTTTCCATTAAAAATTCACACTTTATAAATATAATTCTTACTTATGAATATATTATATGCTGTATTCATTTAACCAATTTTTATCTTTATTCATATTTTGATTTCTCTACTGCTAGATTACATGTTTTTAATTAATTATTCCTTTAGTCACTTGAAATTTTGTATTTTATATATCAATTAAAATGAAGTTTAACTTTAATATTTTACAGTTTAAGAGTGATATGTGTTTAAGTGAAGTGACATAAATAATAAAATGAAAGTTTTATTTTTAAGCTAAATAATATGGAAGTTTTTATTTCATAAATAAAATAAGATGAGAACTTTATTTTTGAACACATACGGCACAATCATGGAAATAAACACACAAAAATATTAAGTCAAATAAGATGAAATTTTTATTTTTAGGAATAAATTACCAAAGCTTGCAAAGAAAATATAAAAAACTGGGTATTTCTATAAACAAATAATTTGTTCTTAGAAAATATGCGATGCATATCATTTTGAATATAACAAACGAGACAGGATAAGAGATAATCCTAGCATAACTAATCCTAGCATAACTTATCCCAACATAATGTTTCTTAGCATAACTTGTGAGTATATCTTTCACACATTAATTTCAGAAAATCAGACCCTGACATGCAACTAAGGAGCAAACATGACATACTTACAATTTTATCACAAACACATAAAGGAAATACCTGAACTTTTCTTCAAAGACATTCTTAACCTATGTAAATGGCCGGTACTTAACCAAAGAGCTTGTTATGCCAGAAATCGATAGGCTTCAACTGGATTACCCAGCTTCGGCATAATAAACCTAGAAAATATATTGACTTGCCGGAAAAGGTTTTTAAGTTTTGAAGCTTTGCTATCTCTGGTGGAGTCTAGCTAGACAATTTACAATTGATAGGCATCAAGCCAGATTAGTTGTTGTAAGTTCACTATTTTTGGGTGGTATCTTCAACAAAAAGGAAGTATTGTAGTATCTGGTATAGAGTTTAGTTTCCGAAGTGTCCAATGATTTTCGATCGCTGGTGGTATCTCGGTGTCCAACTCATTTTCAAAAAAGCACAAGGCAATGTCACCCACATTTGGTGACTGTTAGGGGTCATTTGGTTTGAAGTTATGATTAAATTAATTATGATGGGATAAGTTATACTGTGATTAGTAATGATGGATTAGTTATGTTGGGATTGTTCATTCTGAGATTATTTCTTATTGATGGTTTGGTTATATTCAAAATAGTGTGCATTGCATAAATTTTAAGAAGAAGTTGTTTGTTTACAAAAATAACCTTCACTTTGTTAGTTTTTTACATTTCTTTGCAAGTTTTACTTATTCATTCTTAAAAATAATACTTTCATCTTATTTCACTTAAATATTTTTGTGTGTGCATTCTCATGATGGTATAAAATGTATTTTAAAATAAAATCTTTCTTCTTATTTAGGCTAAATAGAACTTCCATCTTATGTTAGTTAAAGTAAATGAGTATTTATTATTTGTATTGCTTCATTTGAGAGCATATCTCTTAAATAGTAACATATTAAAATTAACTCCATTTTAATTGATGTACAAAATACAAGCTTTCAAGTGACTAAAATAATATACAATTAAATATATGTAATTCAACTGTAGGGAAATCAAAATATAAGTAACCATTAGAACTAGGCAAATAAATTCATAAACAAAAATTATATTTGTACAATGTAATTATCTAATAGACAAATATAAAGAATTATCATAACAATAAGAAGTGGTGAAGGTTGTGAATGTCATATTGTACATGGTATTAAAAATAATGTGAATATACATGAATGTGAAAAGTGATATATAAAAAGTATTTAAAGAGATATCTTTGTCATTTTATCTCGAAATTACAATTCCAGCCAAAGATTGGGATAACTTTATCCCCATACTAATTATTAACCTTGAGATAAGTTATCCTAAACTTCGTAACTAAACAAGGAATTAAATGTTACTCAAAATTTATACCGGGATTAACTCTCGTTATCCTATATACCAAACAACCCCTCATTGTTGTGTTCAATAGGCACAATTTGCACGTACTTCAGGTGTTCCGTTGGTCGCTCTCATCTAAAAGAAAGTTTTTGTCAAGTTCAAGGTGCTATCTCGGTATTTTGACTTTTTATTCATGTCATGAAATTAAAATGGAGAGAAAAACCATTAAGAACGAGTCAGTTTTTTTTTGACAATTGGTAAGTAGTATTCTTCAATGAGAAATAGAAAAGGAGGGGTTTCTATATTCCCTCTTGGTGCTCTCTCTGTAATGAGACTAGGAAACCAACAACCATTTGTTCCTCCGTTGCAAAGTCACAACACAATTGTGGAACCTTTTTTTTTGTTTTACACATACAGAATGCCTGAGCATACAACAAAACTACTTGGTTGCTGGATCAACAGAGGGGGAAGAAAATCTAAGAAAAAGTGGTGGAGTATAATGCCATCAAGCATCTGGTGGTGTATTTGGAAAGAATGAAATAACATATGCTATGATAACAAAGCTAATTCAATAGAAAGTCAAATAGAACTGCTTGACTACTTCTTATTTTTGGTGCAAAGAGGAAGGGATAAAAGAAGCTGCACAAATTTTAGATTTTATAGGCACTTTGTAATTTATTAGCCTTTTGTTTTTTTCTCTTGTTGGAAACTAATTTTTGGAGGTCTCCAACATATCCTTAATGCTGATGAATACAATATTATCTTTATCAGAAAAAAAAAGATTCGATAAACTCAGAAGAAACTTCCTTTTGAATACAATGATGGAGCCCTTTACTTCTTTGCCTTTTTTCCAAAGGAAGTCTCTTCTGAGTTTATCTAAAAAAAAAATTGATAAAGATAATGTTGTATACATCAGCATCAAGGATATGTTGGAGACCTTCAATAATTAGTTTCCCACAGGAGAAAAAACAAAGGTGATGCTAATAGATTACAAAGTGCCTATAAAATCCAAAATTTGTGCAGCTTCTTCTATTCCTTCCTCTTTACACTAAAAATAAAAAGTAGTCAAGCAGAGTTCCATTTTACTTTCTCTATTGGATTAGCTTTGCTATCATAACATCTGCTATTTCTTTCTTTCCAAATACACCGCCAAATGCATGATGTTATTATACTCCACTTTTTCTTAGATTTTCTCCCCCCTCTGTTGATCCAACAACTAAGTAGATCTGTTGTATGCTCAGGCATAAACCATTTTGTATGTGCTAGTCCCAAAAAAATGTACCACAATTGTGTTGTCACTTCGCAATGGAGGAACAAATGGTTGTTGGTTTCCTCAGTCTCATTACAGAGAGAGCACTAAGAGGCAACATAGAAACCCCTCCTTTTCAATTTCTCATGTGTGGAGCATGCTCTTCTGGCAACCAACCAAGAGAAACACTTTACCTTGGTTGGCACCTTGTTCCTCCAAATCTGCTTCCAGGGGCCAAGCTTACCACCTGGATGCTCCTTCACCTCCTTAATATATAGCTTGTTAACAGAAAGGCTACCATCTCTTGAGTGTTTCCATATGATAGAATCTTTTTCTGCCGATAACCCATTGAGAACATGTAAGTCATTTAAATGCCTTCTAAACACAATATTCCATCCATAAATAGACCAAACCCCAGCCACTGTTTCGTCCGGATTTGTACACAAGGAGAATAGGTCAGGAAATAATATTATCAGTGTCTCATTTCCATTCTAATTCTCTTTCCAGAATAGGATTCTCGTCCCGTTTCCCACCGTGTAGACTATGTTTCTACTTAGATCGTCCACAAATTTCTTATTGTTCTCCAAACTGACACCCCATAACTGCTATTCACAGAGTTGGAGACCCAATTTCCATTCAACCCGTACTTGTTGACTATCACCTCCCTCCATAGTGCTTCTTCCTTAGTGTTGAACCTCCATTGCCATTTTGACAAGAGACATCTTTTCTGCAACCCCAAGTTTCTGATTCTAAGTCCACCAGATTGCTTATGTAACTGTGCAAGATTGTTTATGTAACTGTGCAGTCTGCTACTTGACTATATGCAAACCCTTCCCTTCTTTATTGCCTTCCACAAGAAATCTGTTCTCAGTTTGTCAAGTCTTTCTTCCACTTTGGCAGGCATAGGGAATAAAGACATAACATAAGTTGGAAGAGAGTCCAACACAGAGTTTACTGAAGTGACTCTCCCTCCCAAAGAGATATACTGAGCTTTCCAATTGGCCAATTTCTTCTCTGTCTTTTCAATTATGCCGCCCCAAATTTCTAGCTCCTTGTGATTGTGCCCCAATGGCATGCCCAAGTAAGTAGTGGGAAGCTGTTCTACTTTACACCCAATATCCTTGCCAGGCTCTGAAGTTGAGGAACTTCTTTAATTGGAAAGATGCTGCTTTTCCTCCAATTTATAGATAAACCCGAGACTGCTTCAAAAACCACCAGAGTCACTCTTATAAAGGCAACCTGTTCAGCCTTGGCTTCACTGGAAGTAATTGTGTCATCTGCATAAATCAGATGACAAATCTGCATTTCCCTTCCTCAAGAGTTGCGGACCTTGAAGCCTTTTAACCAATTGTTTTGGGTAGCTACTCTCATCATACTATTGTAGCCCTCCATCGCTTGGATGAAAAGAAAGGAGAGAGTGGGTCTCCCTGCCTTAAACCCCTTTCGGATGGGAAAAAACCAGCAGGTTCTCCATTCACTAATTGGAAAACCTAACAGTTTTTATGCAATAATCGATCCAATTCAGCTATTTCTCCCCAAAACCCATTTGTTTTAGAATCCTGATAAGGAATCCCAATTGACATGATCGTAAGCCTTCTCTATGTCCAGCTTGCTCATAATTCCTGGATCATCTCCTTTAACTCTGATGTCCACACACTCACTTGCTATAAGTGCTGCATCAATAATCTGCCTACCTTTTATGAAGGCCATCTGGTGTTTAATAACAAGCTCACTGATCACTTTCTTTAACCTTTGTGCTAGTATCTTAGCAAATGATCTTGTATATTCCACCTATCAAACTTATAGGTCTGAAATCTCTCAGTTCCACAACTCCCACCTTCTTGGGGAACAATGCCACATAGGTTGCATTTAGGCTCTTCTCAAACACTTGCTCGGAGCCGGGTATGGGTATGCGATACAAGTGTGGATCTGAAGGTTGGATTTTTTATCATATAAATTTTAGGATTCAGGGTACGGATCCGAGATATCTATTATCTTATTTATAAGATATCTCCTGTAATACCAAAATTTTATCTTATTTTATATAGCTATATATATGAATATAAACCCAAAAAATAAACTAAATACCAGATCGATCTATACTTCTTGATTATAAATGCAGTCAAAACACTCAAGTTAAGTTGATTGAATTTGATGTGGATCCCACACCTACATGGCTACACCCACAACCAAATCGATCATGGATGTGTCAAGGATTTTGAAGGGTCCAAGAAACATAGCTCCAATGGACTTCAATTGTTCTTGGCACTTGTGTTTCTTTTGTAATTTTTACAGTTACATGAATGTCAGCAACTCAGCATGTTATGGCACTCTTGAGGCTCGATTGCTCTTAGATTATTCAAATTGGCATATTTCTCCTTGTAGCTTATTCAGTTTCTAATCACACTTATTTATTTGTTCATGTAGGATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAGGTGACCCCTTAAACTTGTTTTTTTTGCTCTCCATTTTTACACTTAAGCCAAGTAAAGTACCTACTGAGCACTTGAAGTGAAGACAAATTTCTTACTTGGTACAGTGTGACACCACTTATGAGAGTGTGCAAATTCATTTTTCAATTTATTTATTTTTTTGACAAGGCATTTTTCAAATTTTTTCTTCAATCTACTAATTTTCCACTGTATCTCGACCGCTGTAGCCGCTGCAAATGGCCTCCAATCCACCGTCACTATGCCACATCCACCGCCATGTAAACTACCTCTATTACTGTCCCACCCAGCTCCTCCTCCACTTTGCGGCATTGGCACCACCGCAAAGCCCAAGCCCAAGCCCAAACTGAAACCGAATGAAAGCCCACACCTTCACCATTTAAGTTCATGTCCATAAGAAACCCATGCAAGTTCTTTCTCCAGTAACCCATGAAATTCTCAAAATTTTAGAACAATTTCAGAGGCAAAAGATAGATTATCTAGGCCCAAGGACCTAATGGGCGTCTATAGTCATCGACGGAGGACAATTGTAAGCTGTGATAGAGGTGGTGTTGTGAGGGAATGAACCAGTGGACATGGCCATTAAAGCACTTTCCTAGTGAGGGACTACAGTGGCGACACAATGCTTGTTGAGTGCCCATGATAAGAGAATCTATCGATTTTCGTCATTGTTTCTCTTTTTCTTTTTGGCGTTTGTTTCTCAGTGATGTGTTTTTCTTACTGGTCTTGCTCTTTTTACAGAGAAAAACACATCGCTGAGAAGTTTTTCATTTAGCTGTCAAAATGAAAAAATAAAATTGGCAATTAGGAGGCTGCCTATATATTCAACCAAAAAAAAAACCGATGCTTGCCATCATAGCATCAAGCTTGCCTGTATTTGTTCTGTGACATGCTTGCCCACACTTAGTGCAATCGTAAACCACTTCTACTCCATATCTTCTTTATGTGAATTTTTTAATTTTAACTGTGTCAAGTTTTCCGAACTCCCCCCTCCCCCTCTATGTTTGGTGACGTAAAATTTTCACCTTATTAGATTACTTTTCCCAGAAGTAAAAAGAGCAAAACCAACATTGTAGTGGTACCCAATTTTTCCATAATAAACCACCTTAACCTGCCAAGCTTGATTATATTTTGTCCTTAATCATAACCAGATCTTACCATCATGCACAAACACAAACTTGACCTTAAATATATCACCCTCTGCGCCAACTTCGAACTGGTTATTCATGTACTTTAATGACAGGCCGAGAAGTGATGTTGGATTCTTGTGTGGAACTGAGGGTTATGGAGAGTCCCAATTGTGATTGCAGGACTAAGAGTAGGTTGTGTAAATACTTGTCAGTTTATGGTTCTTTCTAACGTGCTCTGAAAGTGTTTTTAAGAAAAGGCTGTCTAAATGTGATTTATTTGGAAACTGATAAGAAATTAGGAAATCAGTATCTTTGAGAGAAAGGAAAAAATGAGAACATTTCGTTTTGCTGAGAGGAACTTCAGGTTATTGCATTCTAAGAGTGTCAAATTGAGATGCATGGTCTGAAAGTTTGACACAAATCCTTTCTTGTCATTTTGCAGAACAGTGGTTAGTCTTTTGCTGGTACAAGAT----GCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTT</genome_strand>
        <mrna_strand>CGGCGGAAGCCATGAGANGTGGCCGTGACCCGAGTCCTCCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAAAAGGCATTGCCTGCTAATGGAAAGATCGCAAAGGATTCTAAGGACACTGTTCAGGAATGTGTATCTGAGTTCATCAGTTTTATTACTAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGATACAGAGAG...........................................................................................................................................................................................................................................................................................................................................ATGGAG...............................................................................................GGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGAAGTCAGCTTGGGTCCAATACGCAG....................................................................................................................TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACAAAGAACTTTGGATGCATA-CCAAAAAAAAGCTGAATACATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGCCAGGGTTTCTCTTCTTGCTGATCTCTGTGTTAAACTGTCAACAGCA--------A--TGTTT--GAGGACTAGACACCTAAAGGACTCCTACTAATTTCTGCAAATATTTTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCGTTGGGTTTTGAATATCACTTGGAATAAACCATCTAAAAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341200" ref_strand="+" ref_description="SGN-E341200 [cTOE-22-I11]">
      <seq>ccgggctgccggaagggatctgcaagggttggtgatgcatctgttagaaaagatgtagttggatgtcagcttgggtccaatacgcagttcatgtatgaaggttcttttgcacaaggcttagactatggaaactcccaattatgaattttaagatgaacaaagaactttggatgcatacccaaaaaaaagctgaatacatagaacagtggttagtcttttgctggtacaagatgccagggtttctcttcttgctgatatctgtgttaaactgtcaacaacattgttggtacttgtttgagaggactagacgcctaaaggattgctactaatttctgcaaatatatgtgttcgctatactatgatattaattctcttccgctctgtacataccatttggttttgaatgtcacttggaacaaaccatctattatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="48273" stop="38444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47985" g_stop="47899" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47782" g_stop="47719" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="151" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40612" g_stop="40563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="201" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40562" i_stop="38976" i_length="1587">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38975" g_stop="38744" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="433" r_length="232" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E341200" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47985" e_stop="47899"/>
          <exon e_start="47782" e_stop="47719"/>
          <exon e_start="40612" e_stop="40563"/>
          <exon e_start="38975" e_stop="38744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAGGTAAGGTGGTTGTATTTTATTTTGTTCTTTCTTTAGCTCATTTGCTTCACCATTTAGTAGTTCTTACGTGGATATTATCTAATAAGACACGCAATACTTCTTGTGGAAATTGACAGTTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAAGTAAGTTTTTCTCGTACCCAAAAAGTCTTTTTAATGATGTGCTTTTCATCTTTAAATGTTTTACAGGCAGCTTCTCTTCAATAAACTCAACCCTCATGTCATGACTTAGCAGGATCTCTTTTGCGTTTTGTGACACATTTTCTATATCAGGCAACAAACAGTTTGTTGCTCTGTTGCATCAGTCGATGCTACATTTTAGAAAGTAACATTGACTCATTTATAAATAAACCTAGAGCCAACAAATTTCCAAAACTGATTAACATTATTTTATTTCCATTACAATGATTGCTCCAGCCAAACAGATTCACTAAGAAACTAGCCTTCATGGAAGAAATGGTAGCTGGAACTCCCTCAACTTAGCTTTGGTCCTTCCCTTCCATGATGTCCAAAATATAGAGTTTTTGATGGATTGTCAAAGCATTCTCTCTATCTTTGCAGTATGCCTTAATGCAACACTTATAGAAATAAGTCATTGTCGAAATAAGAAGCAATTAACTCCCTTATATATTCAAGTAAAATATTGCAAAGAAGCCAAAATACTGCTGTTTCCACAAGTCCGATAATATATGCAAATTACAACAACAACATACCCAGTAAAATCCCACTAAGTGGGGTCTAGGGAGGGTAGAGTGTACGCTGACCTTATCACTCCCTTATGGGGGTAGAGGGGTTGTTTCCGAAAGACCCTCGGCTCAATTATTTTTCTTTTGAGGGGCTTTTGGGCCGGGAAGGGTTGGAATAGCGAGTGGCCGGATGAGCAAGGGAAGCTTAAATTATTAAGAATCCTTAATTGTCTATTTATGTTTCACATACTTGTGTTACCTACAACTAGTGAGCCTTGAAATGAGTACCCATTAATTCGCGATCTCAGAATTACAATCCGAGGCTGTGTTGATGAGATCCTTCAAAATACACGCAACCATGTCAATCCTACACAATTTGGTATCCATGTGGGATCGACACATTTGATTTGGTCAAATGTATCGTGGGTGCTTTGACGAAATCTATGGCGAAGAAGTATATGTTGATTAGGTATTTGTTTTGCTTATGTTCTATATATATTTAGATATTTACTAGAACACTTAGTTTTTATATGAACTATCTTATGGATAAACTACTAAGGGGTCGTTTGGTGATATGTATAAGGGAACTTAATACTGGGATAATTGTTGATAATTGTTGAGTACTCTTGATAATCCCTTATTTGGTTTCAAAGTTTGGCATAGCTCCATTCCAGGATTAGTAATTAGTACTAGGATAAGTTATCCCTATCTTTGGGTGGAATAGTAATATCAGATGACTTATCCCGAGATAAACTAGGTAAAATGATAAAAGTATCCCCTTAAACCCTATTTGTATATCACTCTTTAGTTTTCATATTCATGTATATTCACATCATTTTTGATATGATGCATAATAACATTCACAATCTTCACTACTCATTATCTTTATGACGATTCTTCATATTTTTCCATTAAAAATTCACACTTTATAAATATAATTCTTACTTATGAATATATTATATGCTGTATTCATTTAACCAATTTTTATCTTTATTCATATTTTGATTTCTCTACTGCTAGATTACATGTTTTTAATTAATTATTCCTTTAGTCACTTGAAATTTTGTATTTTATATATCAATTAAAATGAAGTTTAACTTTAATATTTTACAGTTTAAGAGTGATATGTGTTTAAGTGAAGTGACATAAATAATAAAATGAAAGTTTTATTTTTAAGCTAAATAATATGGAAGTTTTTATTTCATAAATAAAATAAGATGAGAACTTTATTTTTGAACACATACGGCACAATCATGGAAATAAACACACAAAAATATTAAGTCAAATAAGATGAAATTTTTATTTTTAGGAATAAATTACCAAAGCTTGCAAAGAAAATATAAAAAACTGGGTATTTCTATAAACAAATAATTTGTTCTTAGAAAATATGCGATGCATATCATTTTGAATATAACAAACGAGACAGGATAAGAGATAATCCTAGCATAACTAATCCTAGCATAACTTATCCCAACATAATGTTTCTTAGCATAACTTGTGAGTATATCTTTCACACATTAATTTCAGAAAATCAGACCCTGACATGCAACTAAGGAGCAAACATGACATACTTACAATTTTATCACAAACACATAAAGGAAATACCTGAACTTTTCTTCAAAGACATTCTTAACCTATGTAAATGGCCGGTACTTAACCAAAGAGCTTGTTATGCCAGAAATCGATAGGCTTCAACTGGATTACCCAGCTTCGGCATAATAAACCTAGAAAATATATTGACTTGCCGGAAAAGGTTTTTAAGTTTTGAAGCTTTGCTATCTCTGGTGGAGTCTAGCTAGACAATTTACAATTGATAGGCATCAAGCCAGATTAGTTGTTGTAAGTTCACTATTTTTGGGTGGTATCTTCAACAAAAAGGAAGTATTGTAGTATCTGGTATAGAGTTTAGTTTCCGAAGTGTCCAATGATTTTCGATCGCTGGTGGTATCTCGGTGTCCAACTCATTTTCAAAAAAGCACAAGGCAATGTCACCCACATTTGGTGACTGTTAGGGGTCATTTGGTTTGAAGTTATGATTAAATTAATTATGATGGGATAAGTTATACTGTGATTAGTAATGATGGATTAGTTATGTTGGGATTGTTCATTCTGAGATTATTTCTTATTGATGGTTTGGTTATATTCAAAATAGTGTGCATTGCATAAATTTTAAGAAGAAGTTGTTTGTTTACAAAAATAACCTTCACTTTGTTAGTTTTTTACATTTCTTTGCAAGTTTTACTTATTCATTCTTAAAAATAATACTTTCATCTTATTTCACTTAAATATTTTTGTGTGTGCATTCTCATGATGGTATAAAATGTATTTTAAAATAAAATCTTTCTTCTTATTTAGGCTAAATAGAACTTCCATCTTATGTTAGTTAAAGTAAATGAGTATTTATTATTTGTATTGCTTCATTTGAGAGCATATCTCTTAAATAGTAACATATTAAAATTAACTCCATTTTAATTGATGTACAAAATACAAGCTTTCAAGTGACTAAAATAATATACAATTAAATATATGTAATTCAACTGTAGGGAAATCAAAATATAAGTAACCATTAGAACTAGGCAAATAAATTCATAAACAAAAATTATATTTGTACAATGTAATTATCTAATAGACAAATATAAAGAATTATCATAACAATAAGAAGTGGTGAAGGTTGTGAATGTCATATTGTACATGGTATTAAAAATAATGTGAATATACATGAATGTGAAAAGTGATATATAAAAAGTATTTAAAGAGATATCTTTGTCATTTTATCTCGAAATTACAATTCCAGCCAAAGATTGGGATAACTTTATCCCCATACTAATTATTAACCTTGAGATAAGTTATCCTAAACTTCGTAACTAAACAAGGAATTAAATGTTACTCAAAATTTATACCGGGATTAACTCTCGTTATCCTATATACCAAACAACCCCTCATTGTTGTGTTCAATAGGCACAATTTGCACGTACTTCAGGTGTTCCGTTGGTCGCTCTCATCTAAAAGAAAGTTTTTGTCAAGTTCAAGGTGCTATCTCGGTATTTTGACTTTTTATTCATGTCATGAAATTAAAATGGAGAGAAAAACCATTAAGAACGAGTCAGTTTTTTTTTGACAATTGGTAAGTAGTATTCTTCAATGAGAAATAGAAAAGGAGGGGTTTCTATATTCCCTCTTGGTGCTCTCTCTGTAATGAGACTAGGAAACCAACAACCATTTGTTCCTCCGTTGCAAAGTCACAACACAATTGTGGAACCTTTTTTTTTGTTTTACACATACAGAATGCCTGAGCATACAACAAAACTACTTGGTTGCTGGATCAACAGAGGGGGAAGAAAATCTAAGAAAAAGTGGTGGAGTATAATGCCATCAAGCATCTGGTGGTGTATTTGGAAAGAATGAAATAACATATGCTATGATAACAAAGCTAATTCAATAGAAAGTCAAATAGAACTGCTTGACTACTTCTTATTTTTGGTGCAAAGAGGAAGGGATAAAAGAAGCTGCACAAATTTTAGATTTTATAGGCACTTTGTAATTTATTAGCCTTTTGTTTTTTTCTCTTGTTGGAAACTAATTTTTGGAGGTCTCCAACATATCCTTAATGCTGATGAATACAATATTATCTTTATCAGAAAAAAAAAGATTCGATAAACTCAGAAGAAACTTCCTTTTGAATACAATGATGGAGCCCTTTACTTCTTTGCCTTTTTTCCAAAGGAAGTCTCTTCTGAGTTTATCTAAAAAAAAAATTGATAAAGATAATGTTGTATACATCAGCATCAAGGATATGTTGGAGACCTTCAATAATTAGTTTCCCACAGGAGAAAAAACAAAGGTGATGCTAATAGATTACAAAGTGCCTATAAAATCCAAAATTTGTGCAGCTTCTTCTATTCCTTCCTCTTTACACTAAAAATAAAAAGTAGTCAAGCAGAGTTCCATTTTACTTTCTCTATTGGATTAGCTTTGCTATCATAACATCTGCTATTTCTTTCTTTCCAAATACACCGCCAAATGCATGATGTTATTATACTCCACTTTTTCTTAGATTTTCTCCCCCCTCTGTTGATCCAACAACTAAGTAGATCTGTTGTATGCTCAGGCATAAACCATTTTGTATGTGCTAGTCCCAAAAAAATGTACCACAATTGTGTTGTCACTTCGCAATGGAGGAACAAATGGTTGTTGGTTTCCTCAGTCTCATTACAGAGAGAGCACTAAGAGGCAACATAGAAACCCCTCCTTTTCAATTTCTCATGTGTGGAGCATGCTCTTCTGGCAACCAACCAAGAGAAACACTTTACCTTGGTTGGCACCTTGTTCCTCCAAATCTGCTTCCAGGGGCCAAGCTTACCACCTGGATGCTCCTTCACCTCCTTAATATATAGCTTGTTAACAGAAAGGCTACCATCTCTTGAGTGTTTCCATATGATAGAATCTTTTTCTGCCGATAACCCATTGAGAACATGTAAGTCATTTAAATGCCTTCTAAACACAATATTCCATCCATAAATAGACCAAACCCCAGCCACTGTTTCGTCCGGATTTGTACACAAGGAGAATAGGTCAGGAAATAATATTATCAGTGTCTCATTTCCATTCTAATTCTCTTTCCAGAATAGGATTCTCGTCCCGTTTCCCACCGTGTAGACTATGTTTCTACTTAGATCGTCCACAAATTTCTTATTGTTCTCCAAACTGACACCCCATAACTGCTATTCACAGAGTTGGAGACCCAATTTCCATTCAACCCGTACTTGTTGACTATCACCTCCCTCCATAGTGCTTCTTCCTTAGTGTTGAACCTCCATTGCCATTTTGACAAGAGACATCTTTTCTGCAACCCCAAGTTTCTGATTCTAAGTCCACCAGATTGCTTATGTAACTGTGCAAGATTGTTTATGTAACTGTGCAGTCTGCTACTTGACTATATGCAAACCCTTCCCTTCTTTATTGCCTTCCACAAGAAATCTGTTCTCAGTTTGTCAAGTCTTTCTTCCACTTTGGCAGGCATAGGGAATAAAGACATAACATAAGTTGGAAGAGAGTCCAACACAGAGTTTACTGAAGTGACTCTCCCTCCCAAAGAGATATACTGAGCTTTCCAATTGGCCAATTTCTTCTCTGTCTTTTCAATTATGCCGCCCCAAATTTCTAGCTCCTTGTGATTGTGCCCCAATGGCATGCCCAAGTAAGTAGTGGGAAGCTGTTCTACTTTACACCCAATATCCTTGCCAGGCTCTGAAGTTGAGGAACTTCTTTAATTGGAAAGATGCTGCTTTTCCTCCAATTTATAGATAAACCCGAGACTGCTTCAAAAACCACCAGAGTCACTCTTATAAAGGCAACCTGTTCAGCCTTGGCTTCACTGGAAGTAATTGTGTCATCTGCATAAATCAGATGACAAATCTGCATTTCCCTTCCTCAAGAGTTGCGGACCTTGAAGCCTTTTAACCAATTGTTTTGGGTAGCTACTCTCATCATACTATTGTAGCCCTCCATCGCTTGGATGAAAAGAAAGGAGAGAGTGGGTCTCCCTGCCTTAAACCCCTTTCGGATGGGAAAAAACCAGCAGGTTCTCCATTCACTAATTGGAAAACCTAACAGTTTTTATGCAATAATCGATCCAATTCAGCTATTTCTCCCCAAAACCCATTTGTTTTAGAATCCTGATAAGGAATCCCAATTGACATGATCGTAAGCCTTCTCTATGTCCAGCTTGCTCATAATTCCTGGATCATCTCCTTTAACTCTGATGTCCACACACTCACTTGCTATAAGTGCTGCATCAATAATCTGCCTACCTTTTATGAAGGCCATCTGGTGTTTAATAACAAGCTCACTGATCACTTTCTTTAACCTTTGTGCTAGTATCTTAGCAAATGATCTTGTATATTCCACCTATCAAACTTATAGGTCTGAAATCTCTCAGTTCCACAACTCCCACCTTCTTGGGGAACAATGCCACATAGGTTGCATTTAGGCTCTTCTCAAACACTTGCTCGGAGCCGGGTATGGGTATGCGATACAAGTGTGGATCTGAAGGTTGGATTTTTTATCATATAAATTTTAGGATTCAGGGTACGGATCCGAGATATCTATTATCTTATTTATAAGATATCTCCTGTAATACCAAAATTTTATCTTATTTTATATAGCTATATATATGAATATAAACCCAAAAAATAAACTAAATACCAGATCGATCTATACTTCTTGATTATAAATGCAGTCAAAACACTCAAGTTAAGTTGATTGAATTTGATGTGGATCCCACACCTACATGGCTACACCCACAACCAAATCGATCATGGATGTGTCAAGGATTTTGAAGGGTCCAAGAAACATAGCTCCAATGGACTTCAATTGTTCTTGGCACTTGTGTTTCTTTTGTAATTTTTACAGTTACATGAATGTCAGCAACTCAGCATGTTATGGCACTCTTGAGGCTCGATTGCTCTTAGATTATTCAAATTGGCATATTTCTCCTTGTAGCTTATTCAGTTTCTAATCACACTTATTTATTTGTTCATGTAGGATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAGGTGACCCCTTAAACTTGTTTTTTTTGCTCTCCATTTTTACACTTAAGCCAAGTAAAGTACCTACTGAGCACTTGAAGTGAAGACAAATTTCTTACTTGGTACAGTGTGACACCACTTATGAGAGTGTGCAAATTCATTTTTCAATTTATTTATTTTTTTGACAAGGCATTTTTCAAATTTTTTCTTCAATCTACTAATTTTCCACTGTATCTCGACCGCTGTAGCCGCTGCAAATGGCCTCCAATCCACCGTCACTATGCCACATCCACCGCCATGTAAACTACCTCTATTACTGTCCCACCCAGCTCCTCCTCCACTTTGCGGCATTGGCACCACCGCAAAGCCCAAGCCCAAGCCCAAACTGAAACCGAATGAAAGCCCACACCTTCACCATTTAAGTTCATGTCCATAAGAAACCCATGCAAGTTCTTTCTCCAGTAACCCATGAAATTCTCAAAATTTTAGAACAATTTCAGAGGCAAAAGATAGATTATCTAGGCCCAAGGACCTAATGGGCGTCTATAGTCATCGACGGAGGACAATTGTAAGCTGTGATAGAGGTGGTGTTGTGAGGGAATGAACCAGTGGACATGGCCATTAAAGCACTTTCCTAGTGAGGGACTACAGTGGCGACACAATGCTTGTTGAGTGCCCATGATAAGAGAATCTATCGATTTTCGTCATTGTTTCTCTTTTTCTTTTTGGCGTTTGTTTCTCAGTGATGTGTTTTTCTTACTGGTCTTGCTCTTTTTACAGAGAAAAACACATCGCTGAGAAGTTTTTCATTTAGCTGTCAAAATGAAAAAATAAAATTGGCAATTAGGAGGCTGCCTATATATTCAACCAAAAAAAAAACCGATGCTTGCCATCATAGCATCAAGCTTGCCTGTATTTGTTCTGTGACATGCTTGCCCACACTTAGTGCAATCGTAAACCACTTCTACTCCATATCTTCTTTATGTGAATTTTTTAATTTTAACTGTGTCAAGTTTTCCGAACTCCCCCCTCCCCCTCTATGTTTGGTGACGTAAAATTTTCACCTTATTAGATTACTTTTCCCAGAAGTAAAAAGAGCAAAACCAACATTGTAGTGGTACCCAATTTTTCCATAATAAACCACCTTAACCTGCCAAGCTTGATTATATTTTGTCCTTAATCATAACCAGATCTTACCATCATGCACAAACACAAACTTGACCTTAAATATATCACCCTCTGCGCCAACTTCGAACTGGTTATTCATGTACTTTAATGACAGGCCGAGAAGTGATGTTGGATTCTTGTGTGGAACTGAGGGTTATGGAGAGTCCCAATTGTGATTGCAGGACTAAGAGTAGGTTGTGTAAATACTTGTCAGTTTATGGTTCTTTCTAACGTGCTCTGAAAGTGTTTTTAAGAAAAGGCTGTCTAAATGTGATTTATTTGGAAACTGATAAGAAATTAGGAAATCAGTATCTTTGAGAGAAAGGAAAAAATGAGAACATTTCGTTTTGCTGAGAGGAACTTCAGGTTATTGCATTCTAAGAGTGTCAAATTGAGATGCATGGTCTGAAAGTTTGACACAAATCCTTTCTTGTCATTTTGCAGAACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAG</genome_strand>
        <mrna_strand>CCGGGCTGCCGGAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAG....................................................................................................................TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTGCTACTAATTTCTGCAAATATATGTGTTCGCTATACTATGATATTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607263" ref_strand="+" ref_description="SGN-E607263 [23224]">
      <seq>ctcaaacaaaaactaacaaaatattctctgggatcaacctctacctacgatcatccataaagttagggttccggtacactgagaatggcggagccggcaagtccaggaggcggcggcggaagccatgagagtggcggtgacccgagtcctcagtccaacttgcgagaacaggataggtacctaccgatcgctaatattggacgcataatgaaaaaggcattgcctgctaatggaaagatcgcaaaggattctaaggacactgttcaggaatgtgtatctgagttcatcagttttattactagcgaagctagtgacaagtgtcagaaagagaagagaaagacgatcaacggagatgatttactatcagccctggctaccttgggatttgaggactacattgaaccactgaaggtctatttgactcgatacagagagatggagggagatgccaagggatctgcaagggttggtgatgcatctgttaggaaaagatgtagttggaagtcagctttgggtccaatacgcagttcatgtatgaaggttcttttgcacaaggcttagactatggaaactcccaattatgaattttaaggatgaacaaagcaactttggatgcataccaaaaaaaaggctgaatacatagaacaagtggttaggtcttttgctggtacaaagactgcccagccagggtttctcttcttgctgatctctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="51544" stop="38614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51245" g_stop="50941" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50940" i_stop="48545" i_length="2396">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48544" g_stop="48415" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="435" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48414" i_stop="48084" i_length="331">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.359" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48083" g_stop="48078" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="441" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48077" i_stop="47983" i_length="95">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47982" g_stop="47899" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="527" r_length="86" r_score="0.940"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47782" g_stop="47719" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="592" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106">
            <donor d_prob="0.857" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40612" g_stop="40563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="643" r_length="51" r_score="0.920"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40562" i_stop="38976" i_length="1587">
            <donor d_prob="0.911" d_score="0.92"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38975" g_stop="38954" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="667" r_length="24" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E607263" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51245" e_stop="50941"/>
          <exon e_start="48544" e_stop="48415"/>
          <exon e_start="48083" e_stop="48078"/>
          <exon e_start="47982" e_stop="47899"/>
          <exon e_start="47782" e_stop="47719"/>
          <exon e_start="40612" e_stop="40563"/>
          <exon e_start="38975" e_stop="38954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACAAAACTTAACAAAATATTCTGTTTGATCAACCTCTACCTACGATCATCCATAGATTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAGAAGGCATTGCCTGCTAATGGGAAGATCGCTAAGGATTCTAAAGACACGGTTCAGGAATGCGTATCTGAGTTCATCAGTTTTATTACTAGCGAGTAAGCTTCTATTTCGTTTCATGGTTCGATTCTATATGTTAAAATGCACTAATGCGAATTTTATAGTAAGTTTATAACTGAATCATAAAGATCAACTGAGGTTTTGTGGCATTGTACTGGGTAAGTTTCGAAGTTTTAAATCAGATGTTTATAATATTTCTAATTTATCATGTCAATAAATTTTGTTGGAATTCCTTTTTAGACACATACAGTTCCATTTAGAGTTACTATTTTGTCTGTATTGCTTCAGTGAATTATAGAAATGTGTTATTTACCTGTATTCAGTGTTCAATTGTACATTCTGAAATGGAGGAATGTGATTTTTATAGTAAGTTTATACTAATTCTTAAAGATCGCTATGTCAATTGAGGTTTTGTGGCATTGTACTGGGTAACTTTTGAAGTTTTAAACTCTATGCATGGATGTTTATAATTTTGGTAGTCTATCATTTCAAGAAATTTTATTGGAATTCCTTTAGGCACAGATGGTTCCATTTTAGAGTTTCTATTTTATTTTTGTTTTGTGTTTTTGATGTGTATGGAGATGGATAACTACTTCGTATACCTTTTTAGCTCAAGAGTCTCTAAGAGTTATAATTTTTCGTGGTGTTGCTTGTGTTTCCTTTCCCAAATTTTTTATACATGATAAAGATAACCCTTAGAAAGATTTCTTTCAACATCAATAGGATGTTTTGTTGGCAGTGTTCAGGAAAGCGATGAAGCGAAGTGATGCGAGCCTTCTACGCTTCACAGACTAGAATGAGTATGTGTGCGCTTCATCGCTTAAAGCGAGTGCTTCATCGCCTAAAGCGTGAAGCATAGCCTTATCGCTTTTTACCGCTTCACGCTTCCCTGAACACTGCTTGTTGGTGTTTAGTCCATAGCAATTAACAAAGGTTGGTAGGTAATAGCTTACTTTATGATATATGGTTATGACTCTTCCATGAATTACATGACAACCAAAACTCCCCACTGGAGATTCCATCCCACTCTTCCTTGGCTGCTGTAATTGTTTGTTTAATCCCTTTTCATTTTTCATGCCTGCCACCTCCTCAATGATTAGCAATATCAAGCTGAATTGGGCATGGCATTTACGAGGCTGGATAATCATAGACATGTTGTCACCTTCTGCTCCGTACGGGGAAAAAGAGCACAATGAAAGATGTGTTGACAATTAGTAGACAAGGGAATCATAAATGCATGGTGTCCTTAATATGGGAAAACACATCTATTTGAGTGGAAATATTACGGGAAAAGAGGACTTGACAATACGATAGGTAGGGTAGAGTTACCTGCCATTTTAATGAAGCCCTTAAGACAAACATGTAAAAAGGGGAGGACAAGAATAGTAGTACATGGAGGAGAAGTACGGAGGGAGGAATGCAAAAATAAAATGGAAATAAGGTGGGCATGGAAGCATGTTATCAACCACTTTCGATGGCAAATCCATAAAAAAGAACGACACGGTGTGTGTGACAATTCTTCCCCATGTTCACTAAGAAAATTTGGAATGCAATGCATTGTCAGAGACTTTATTGTTTGTACTTGTGACATTTTTTAAGAATGGATTATAGTTGACCCAAATTGAATAGCTGCTTTTGCTTTTCGGTTTGTGAGTTAAAAAAAAGGCTATTGTCAAGAAAACCCTTATTTCTTTGTTTTTCGTAGGAAAATATCCCCAATAGTAGAAGGTATCCAGTGCTGCAATTCTGCCTGTGATTGTGCTGAGTTGCTCTGTGCATTGTTATTCAAGTGATCATGCCATACCTAGTTGTTTATATCCCTGTTTAGATGTTCGCACTGCAGTTCCTTCGCTAAAAATACAAGTCCTCTTTCCTATTTTACCTTTCTTTGACAAGGTTACATGTCCTAATTATGCCATTCTATCAAATTCATGGCATGCTAGCTTTCCACTAGTCTGAGTTCAGAGTCGTGTGTGTATCAGAATTTGGGAGATCAAATATTTTCCTTTTACTGTTAGGTCTCGTAGCTCATACGCAATGTCATTTTGAACATGATATTTACCTTTCTTTAAAAGTATCTACGTAGCTAATATCTTATGGATGGTATTGTTTTACTGCTATTTCTTTTTCTGGATCATATACGTTTACATTAGATGTTGTTTTACCAGTTTCAATAAAAGTTGTATATTTGATCTAGATGTCTTTATATAAATAATATATGGAAAGACGTTGCCAGTATTTGGAAGTTCGAGTCCAAATATATGTGTGGGTACTTGTGTAGAAGTAGAAGACATGTGTTACATTTTCAAATGTTTGTTGTCAGAGGGTGGACTTCCATACGTATACATACTGAGATTTAGTAGAATGATGACATTTGGAAGTAACAACCACTCTTCTTGCTTGTTTTTCAAATGAGTTCTCTTTTATTTTATAGAGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGATACAGAGAGGTAAATGCAACTCTTCTTCACGCCCTTAGTGGTTTTGGGACTGGTTTCTCATATGAACCGCTTTATTGTCTTTATTTTATGTTCTATTAGGCTTCCTCATTATTTGGTTTGCGAGGAAATTGATAAAAGAATATATGGACTATTGCATTTGCCAATTGCCATCTTCTTAATGTTGCACTGTGTATTTTTGGTTTATATGGACTGCACTATTGTTGTTTTAAGGTTTTGTTCAATTGAGTTTTTTCTCATAATCAACTAAGTAAATGTTGTTTCTTTGGTTCCTGGACAATTTTCTCTGCTGGGTTGCATGGGTCAATCAATGGTGTTGTAGATGGAGGTACACAGTTCTCCACATCACTGAGATAGATTTCCTTATTTTCTGCATCTCTGATTTTTCATTAAAATTGTATTGTGATTTGAAACTAATATCAGGGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTA-GAAAAGATGTAGTTGGATGTCAGC-TTGGGTCCAATACGCAGGTAAGGTGGTTGTATTTTATTTTGTTCTTTCTTTAGCTCATTTGCTTCACCATTTAGTAGTTCTTACGTGGATATTATCTAATAAGACACGCAATACTTCTTGTGGAAATTGACAGTTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA-GTAAGTTTTTCTCGTACCCAAAAAGTCTTTTTAATGATGTGCTTTTCATCTTTAAATGTTTTACAGGCAGCTTCTCTTCAATAAACTCAACCCTCATGTCATGACTTAGCAGGATCTCTTTTGCGTTTTGTGACACATTTTCTATATCAGGCAACAAACAGTTTGTTGCTCTGTTGCATCAGTCGATGCTACATTTTAGAAAGTAACATTGACTCATTTATAAATAAACCTAGAGCCAACAAATTTCCAAAACTGATTAACATTATTTTATTTCCATTACAATGATTGCTCCAGCCAAACAGATTCACTAAGAAACTAGCCTTCATGGAAGAAATGGTAGCTGGAACTCCCTCAACTTAGCTTTGGTCCTTCCCTTCCATGATGTCCAAAATATAGAGTTTTTGATGGATTGTCAAAGCATTCTCTCTATCTTTGCAGTATGCCTTAATGCAACACTTATAGAAATAAGTCATTGTCGAAATAAGAAGCAATTAACTCCCTTATATATTCAAGTAAAATATTGCAAAGAAGCCAAAATACTGCTGTTTCCACAAGTCCGATAATATATGCAAATTACAACAACAACATACCCAGTAAAATCCCACTAAGTGGGGTCTAGGGAGGGTAGAGTGTACGCTGACCTTATCACTCCCTTATGGGGGTAGAGGGGTTGTTTCCGAAAGACCCTCGGCTCAATTATTTTTCTTTTGAGGGGCTTTTGGGCCGGGAAGGGTTGGAATAGCGAGTGGCCGGATGAGCAAGGGAAGCTTAAATTATTAAGAATCCTTAATTGTCTATTTATGTTTCACATACTTGTGTTACCTACAACTAGTGAGCCTTGAAATGAGTACCCATTAATTCGCGATCTCAGAATTACAATCCGAGGCTGTGTTGATGAGATCCTTCAAAATACACGCAACCATGTCAATCCTACACAATTTGGTATCCATGTGGGATCGACACATTTGATTTGGTCAAATGTATCGTGGGTGCTTTGACGAAATCTATGGCGAAGAAGTATATGTTGATTAGGTATTTGTTTTGCTTATGTTCTATATATATTTAGATATTTACTAGAACACTTAGTTTTTATATGAACTATCTTATGGATAAACTACTAAGGGGTCGTTTGGTGATATGTATAAGGGAACTTAATACTGGGATAATTGTTGATAATTGTTGAGTACTCTTGATAATCCCTTATTTGGTTTCAAAGTTTGGCATAGCTCCATTCCAGGATTAGTAATTAGTACTAGGATAAGTTATCCCTATCTTTGGGTGGAATAGTAATATCAGATGACTTATCCCGAGATAAACTAGGTAAAATGATAAAAGTATCCCCTTAAACCCTATTTGTATATCACTCTTTAGTTTTCATATTCATGTATATTCACATCATTTTTGATATGATGCATAATAACATTCACAATCTTCACTACTCATTATCTTTATGACGATTCTTCATATTTTTCCATTAAAAATTCACACTTTATAAATATAATTCTTACTTATGAATATATTATATGCTGTATTCATTTAACCAATTTTTATCTTTATTCATATTTTGATTTCTCTACTGCTAGATTACATGTTTTTAATTAATTATTCCTTTAGTCACTTGAAATTTTGTATTTTATATATCAATTAAAATGAAGTTTAACTTTAATATTTTACAGTTTAAGAGTGATATGTGTTTAAGTGAAGTGACATAAATAATAAAATGAAAGTTTTATTTTTAAGCTAAATAATATGGAAGTTTTTATTTCATAAATAAAATAAGATGAGAACTTTATTTTTGAACACATACGGCACAATCATGGAAATAAACACACAAAAATATTAAGTCAAATAAGATGAAATTTTTATTTTTAGGAATAAATTACCAAAGCTTGCAAAGAAAATATAAAAAACTGGGTATTTCTATAAACAAATAATTTGTTCTTAGAAAATATGCGATGCATATCATTTTGAATATAACAAACGAGACAGGATAAGAGATAATCCTAGCATAACTAATCCTAGCATAACTTATCCCAACATAATGTTTCTTAGCATAACTTGTGAGTATATCTTTCACACATTAATTTCAGAAAATCAGACCCTGACATGCAACTAAGGAGCAAACATGACATACTTACAATTTTATCACAAACACATAAAGGAAATACCTGAACTTTTCTTCAAAGACATTCTTAACCTATGTAAATGGCCGGTACTTAACCAAAGAGCTTGTTATGCCAGAAATCGATAGGCTTCAACTGGATTACCCAGCTTCGGCATAATAAACCTAGAAAATATATTGACTTGCCGGAAAAGGTTTTTAAGTTTTGAAGCTTTGCTATCTCTGGTGGAGTCTAGCTAGACAATTTACAATTGATAGGCATCAAGCCAGATTAGTTGTTGTAAGTTCACTATTTTTGGGTGGTATCTTCAACAAAAAGGAAGTATTGTAGTATCTGGTATAGAGTTTAGTTTCCGAAGTGTCCAATGATTTTCGATCGCTGGTGGTATCTCGGTGTCCAACTCATTTTCAAAAAAGCACAAGGCAATGTCACCCACATTTGGTGACTGTTAGGGGTCATTTGGTTTGAAGTTATGATTAAATTAATTATGATGGGATAAGTTATACTGTGATTAGTAATGATGGATTAGTTATGTTGGGATTGTTCATTCTGAGATTATTTCTTATTGATGGTTTGGTTATATTCAAAATAGTGTGCATTGCATAAATTTTAAGAAGAAGTTGTTTGTTTACAAAAATAACCTTCACTTTGTTAGTTTTTTACATTTCTTTGCAAGTTTTACTTATTCATTCTTAAAAATAATACTTTCATCTTATTTCACTTAAATATTTTTGTGTGTGCATTCTCATGATGGTATAAAATGTATTTTAAAATAAAATCTTTCTTCTTATTTAGGCTAAATAGAACTTCCATCTTATGTTAGTTAAAGTAAATGAGTATTTATTATTTGTATTGCTTCATTTGAGAGCATATCTCTTAAATAGTAACATATTAAAATTAACTCCATTTTAATTGATGTACAAAATACAAGCTTTCAAGTGACTAAAATAATATACAATTAAATATATGTAATTCAACTGTAGGGAAATCAAAATATAAGTAACCATTAGAACTAGGCAAATAAATTCATAAACAAAAATTATATTTGTACAATGTAATTATCTAATAGACAAATATAAAGAATTATCATAACAATAAGAAGTGGTGAAGGTTGTGAATGTCATATTGTACATGGTATTAAAAATAATGTGAATATACATGAATGTGAAAAGTGATATATAAAAAGTATTTAAAGAGATATCTTTGTCATTTTATCTCGAAATTACAATTCCAGCCAAAGATTGGGATAACTTTATCCCCATACTAATTATTAACCTTGAGATAAGTTATCCTAAACTTCGTAACTAAACAAGGAATTAAATGTTACTCAAAATTTATACCGGGATTAACTCTCGTTATCCTATATACCAAACAACCCCTCATTGTTGTGTTCAATAGGCACAATTTGCACGTACTTCAGGTGTTCCGTTGGTCGCTCTCATCTAAAAGAAAGTTTTTGTCAAGTTCAAGGTGCTATCTCGGTATTTTGACTTTTTATTCATGTCATGAAATTAAAATGGAGAGAAAAACCATTAAGAACGAGTCAGTTTTTTTTTGACAATTGGTAAGTAGTATTCTTCAATGAGAAATAGAAAAGGAGGGGTTTCTATATTCCCTCTTGGTGCTCTCTCTGTAATGAGACTAGGAAACCAACAACCATTTGTTCCTCCGTTGCAAAGTCACAACACAATTGTGGAACCTTTTTTTTTGTTTTACACATACAGAATGCCTGAGCATACAACAAAACTACTTGGTTGCTGGATCAACAGAGGGGGAAGAAAATCTAAGAAAAAGTGGTGGAGTATAATGCCATCAAGCATCTGGTGGTGTATTTGGAAAGAATGAAATAACATATGCTATGATAACAAAGCTAATTCAATAGAAAGTCAAATAGAACTGCTTGACTACTTCTTATTTTTGGTGCAAAGAGGAAGGGATAAAAGAAGCTGCACAAATTTTAGATTTTATAGGCACTTTGTAATTTATTAGCCTTTTGTTTTTTTCTCTTGTTGGAAACTAATTTTTGGAGGTCTCCAACATATCCTTAATGCTGATGAATACAATATTATCTTTATCAGAAAAAAAAAGATTCGATAAACTCAGAAGAAACTTCCTTTTGAATACAATGATGGAGCCCTTTACTTCTTTGCCTTTTTTCCAAAGGAAGTCTCTTCTGAGTTTATCTAAAAAAAAAATTGATAAAGATAATGTTGTATACATCAGCATCAAGGATATGTTGGAGACCTTCAATAATTAGTTTCCCACAGGAGAAAAAACAAAGGTGATGCTAATAGATTACAAAGTGCCTATAAAATCCAAAATTTGTGCAGCTTCTTCTATTCCTTCCTCTTTACACTAAAAATAAAAAGTAGTCAAGCAGAGTTCCATTTTACTTTCTCTATTGGATTAGCTTTGCTATCATAACATCTGCTATTTCTTTCTTTCCAAATACACCGCCAAATGCATGATGTTATTATACTCCACTTTTTCTTAGATTTTCTCCCCCCTCTGTTGATCCAACAACTAAGTAGATCTGTTGTATGCTCAGGCATAAACCATTTTGTATGTGCTAGTCCCAAAAAAATGTACCACAATTGTGTTGTCACTTCGCAATGGAGGAACAAATGGTTGTTGGTTTCCTCAGTCTCATTACAGAGAGAGCACTAAGAGGCAACATAGAAACCCCTCCTTTTCAATTTCTCATGTGTGGAGCATGCTCTTCTGGCAACCAACCAAGAGAAACACTTTACCTTGGTTGGCACCTTGTTCCTCCAAATCTGCTTCCAGGGGCCAAGCTTACCACCTGGATGCTCCTTCACCTCCTTAATATATAGCTTGTTAACAGAAAGGCTACCATCTCTTGAGTGTTTCCATATGATAGAATCTTTTTCTGCCGATAACCCATTGAGAACATGTAAGTCATTTAAATGCCTTCTAAACACAATATTCCATCCATAAATAGACCAAACCCCAGCCACTGTTTCGTCCGGATTTGTACACAAGGAGAATAGGTCAGGAAATAATATTATCAGTGTCTCATTTCCATTCTAATTCTCTTTCCAGAATAGGATTCTCGTCCCGTTTCCCACCGTGTAGACTATGTTTCTACTTAGATCGTCCACAAATTTCTTATTGTTCTCCAAACTGACACCCCATAACTGCTATTCACAGAGTTGGAGACCCAATTTCCATTCAACCCGTACTTGTTGACTATCACCTCCCTCCATAGTGCTTCTTCCTTAGTGTTGAACCTCCATTGCCATTTTGACAAGAGACATCTTTTCTGCAACCCCAAGTTTCTGATTCTAAGTCCACCAGATTGCTTATGTAACTGTGCAAGATTGTTTATGTAACTGTGCAGTCTGCTACTTGACTATATGCAAACCCTTCCCTTCTTTATTGCCTTCCACAAGAAATCTGTTCTCAGTTTGTCAAGTCTTTCTTCCACTTTGGCAGGCATAGGGAATAAAGACATAACATAAGTTGGAAGAGAGTCCAACACAGAGTTTACTGAAGTGACTCTCCCTCCCAAAGAGATATACTGAGCTTTCCAATTGGCCAATTTCTTCTCTGTCTTTTCAATTATGCCGCCCCAAATTTCTAGCTCCTTGTGATTGTGCCCCAATGGCATGCCCAAGTAAGTAGTGGGAAGCTGTTCTACTTTACACCCAATATCCTTGCCAGGCTCTGAAGTTGAGGAACTTCTTTAATTGGAAAGATGCTGCTTTTCCTCCAATTTATAGATAAACCCGAGACTGCTTCAAAAACCACCAGAGTCACTCTTATAAAGGCAACCTGTTCAGCCTTGGCTTCACTGGAAGTAATTGTGTCATCTGCATAAATCAGATGACAAATCTGCATTTCCCTTCCTCAAGAGTTGCGGACCTTGAAGCCTTTTAACCAATTGTTTTGGGTAGCTACTCTCATCATACTATTGTAGCCCTCCATCGCTTGGATGAAAAGAAAGGAGAGAGTGGGTCTCCCTGCCTTAAACCCCTTTCGGATGGGAAAAAACCAGCAGGTTCTCCATTCACTAATTGGAAAACCTAACAGTTTTTATGCAATAATCGATCCAATTCAGCTATTTCTCCCCAAAACCCATTTGTTTTAGAATCCTGATAAGGAATCCCAATTGACATGATCGTAAGCCTTCTCTATGTCCAGCTTGCTCATAATTCCTGGATCATCTCCTTTAACTCTGATGTCCACACACTCACTTGCTATAAGTGCTGCATCAATAATCTGCCTACCTTTTATGAAGGCCATCTGGTGTTTAATAACAAGCTCACTGATCACTTTCTTTAACCTTTGTGCTAGTATCTTAGCAAATGATCTTGTATATTCCACCTATCAAACTTATAGGTCTGAAATCTCTCAGTTCCACAACTCCCACCTTCTTGGGGAACAATGCCACATAGGTTGCATTTAGGCTCTTCTCAAACACTTGCTCGGAGCCGGGTATGGGTATGCGATACAAGTGTGGATCTGAAGGTTGGATTTTTTATCATATAAATTTTAGGATTCAGGGTACGGATCCGAGATATCTATTATCTTATTTATAAGATATCTCCTGTAATACCAAAATTTTATCTTATTTTATATAGCTATATATATGAATATAAACCCAAAAAATAAACTAAATACCAGATCGATCTATACTTCTTGATTATAAATGCAGTCAAAACACTCAAGTTAAGTTGATTGAATTTGATGTGGATCCCACACCTACATGGCTACACCCACAACCAAATCGATCATGGATGTGTCAAGGATTTTGAAGGGTCCAAGAAACATAGCTCCAATGGACTTCAATTGTTCTTGGCACTTGTGTTTCTTTTGTAATTTTTACAGTTACATGAATGTCAGCAACTCAGCATGTTATGGCACTCTTGAGGCTCGATTGCTCTTAGATTATTCAAATTGGCATATTTCTCCTTGTAGCTTATTCAGTTTCTAATCACACTTATTTATTTGTTCATGTAGGATGAACAAAG-AACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAGGTGACCCCTTAAACTTGTTTTTTTTGCTCTCCATTTTTACACTTAAGCCAAGTAAAGTACCTACTGAGCACTTGAAGTGAAGACAAATTTCTTACTTGGTACAGTGTGACACCACTTATGAGAGTGTGCAAATTCATTTTTCAATTTATTTATTTTTTTGACAAGGCATTTTTCAAATTTTTTCTTCAATCTACTAATTTTCCACTGTATCTCGACCGCTGTAGCCGCTGCAAATGGCCTCCAATCCACCGTCACTATGCCACATCCACCGCCATGTAAACTACCTCTATTACTGTCCCACCCAGCTCCTCCTCCACTTTGCGGCATTGGCACCACCGCAAAGCCCAAGCCCAAGCCCAAACTGAAACCGAATGAAAGCCCACACCTTCACCATTTAAGTTCATGTCCATAAGAAACCCATGCAAGTTCTTTCTCCAGTAACCCATGAAATTCTCAAAATTTTAGAACAATTTCAGAGGCAAAAGATAGATTATCTAGGCCCAAGGACCTAATGGGCGTCTATAGTCATCGACGGAGGACAATTGTAAGCTGTGATAGAGGTGGTGTTGTGAGGGAATGAACCAGTGGACATGGCCATTAAAGCACTTTCCTAGTGAGGGACTACAGTGGCGACACAATGCTTGTTGAGTGCCCATGATAAGAGAATCTATCGATTTTCGTCATTGTTTCTCTTTTTCTTTTTGGCGTTTGTTTCTCAGTGATGTGTTTTTCTTACTGGTCTTGCTCTTTTTACAGAGAAAAACACATCGCTGAGAAGTTTTTCATTTAGCTGTCAAAATGAAAAAATAAAATTGGCAATTAGGAGGCTGCCTATATATTCAACCAAAAAAAAAACCGATGCTTGCCATCATAGCATCAAGCTTGCCTGTATTTGTTCTGTGACATGCTTGCCCACACTTAGTGCAATCGTAAACCACTTCTACTCCATATCTTCTTTATGTGAATTTTTTAATTTTAACTGTGTCAAGTTTTCCGAACTCCCCCCTCCCCCTCTATGTTTGGTGACGTAAAATTTTCACCTTATTAGATTACTTTTCCCAGAAGTAAAAAGAGCAAAACCAACATTGTAGTGGTACCCAATTTTTCCATAATAAACCACCTTAACCTGCCAAGCTTGATTATATTTTGTCCTTAATCATAACCAGATCTTACCATCATGCACAAACACAAACTTGACCTTAAATATATCACCCTCTGCGCCAACTTCGAACTGGTTATTCATGTACTTTAATGACAGGCCGAGAAGTGATGTTGGATTCTTGTGTGGAACTGAGGGTTATGGAGAGTCCCAATTGTGATTGCAGGACTAAGAGTAGGTTGTGTAAATACTTGTCAGTTTATGGTTCTTTCTAACGTGCTCTGAAAGTGTTTTTAAGAAAAGGCTGTCTAAATGTGATTTATTTGGAAACTGATAAGAAATTAGGAAATCAGTATCTTTGAGAGAAAGGAAAAAATGAGAACATTTCGTTTTGCTGAGAGGAACTTCAGGTTATTGCATTCTAAGAGTGTCAAATTGAGATGCATGGTCTGAAAGTTTGACACAAATCCTTTCTTGTCATTTTGCAGAAC-AGTGGTTA-GTCTTTTGCTG</genome_strand>
        <mrna_strand>CTCAAACAAAAACTAACAAAATATTCTCTGGGATCAACCTCTACCTACGATCATCCATAAAGTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAAAAGGCATTGCCTGCTAATGGAAAGATCGCAAAGGATTCTAAGGACACTGTTCAGGAATGTGTATCTGAGTTCATCAGTTTTATTACTAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGATACAGAGAG...........................................................................................................................................................................................................................................................................................................................................ATGGAG...............................................................................................GGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGGAAAAGATGTAGTTGGAAGTCAGCTTTGGGTCCAATACGCAG....................................................................................................................TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACAAAGCAACTTTGGATGCATACCAAAAAAAAGGCTGAATACATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGTGGTTAGGTCTTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585341" ref_strand="+" ref_description="SGN-E585341 [67800]">
      <seq>tgtgcgtaaaaataggttcttcctctggcagtcgctgccgttggatctatgtgtatagcgcagaaaagctcagcatccattttccggccaaattcctttctcaaacaaaaactaacaaaatattctcttggatcaacctctacctacgatcatccataaagttagggttccggtacactgagaatggcggagccggcaagtccaggaggcggcggcggaagccatgagagtggcggtgacccgagtcctcagtccaacttgcgagaacaggataggtacctaccgatcgctaatattggacgcataatgaaaaaggcattgcctgctaatggaaagatcgcaaaggattctaaggacactgttcaggaatgtgtatctgagttcatcagttttattactagcgaagctagtgacaagtgtcagaaagagaagagaaagacgatcaacggagatgatttactatcagccctggctaccttgggatttgaggactacattgaaccactgaaggtctatttgactcggtacagagagatggagggagatgccaagggatctgcaagggttggtgatgcatctgttagaaaagatgtagttggaagtcagcttgggtccaatacgcagttcatgtatgaaggttcttttgcacaaggcttagactatggaaactcccaattatgaattttaagatgaacaaaggaactttggatgcataccaaaaaaaaaagtgaatacatagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="51649" stop="40263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51349" g_stop="50941" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50940" i_stop="48545" i_length="2396">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48544" g_stop="48415" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="534" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48414" i_stop="48084" i_length="331">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.359" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48083" g_stop="48078" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="540" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48077" i_stop="47983" i_length="95">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47982" g_stop="47899" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="624" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47782" g_stop="47719" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="688" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40612" g_stop="40563" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="739" r_length="51" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E585341" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51349" e_stop="50941"/>
          <exon e_start="48544" e_stop="48415"/>
          <exon e_start="48083" e_stop="48078"/>
          <exon e_start="47982" e_stop="47899"/>
          <exon e_start="47782" e_stop="47719"/>
          <exon e_start="40612" e_stop="40563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCGTAAAAATAGGTTCTTCTTACGGCTGTCCCTGCCGTTGGATCTGTGTATAGCGCAGAAAGCCATTAAAGCTCAGCATCCATTTTCC-GCCAAATTCCTTTGTCAAACAAAACTTAACAAAATATTCTGTTTGATCAACCTCTACCTACGATCATCCATAGATTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAGAAGGCATTGCCTGCTAATGGGAAGATCGCTAAGGATTCTAAAGACACGGTTCAGGAATGCGTATCTGAGTTCATCAGTTTTATTACTAGCGAGTAAGCTTCTATTTCGTTTCATGGTTCGATTCTATATGTTAAAATGCACTAATGCGAATTTTATAGTAAGTTTATAACTGAATCATAAAGATCAACTGAGGTTTTGTGGCATTGTACTGGGTAAGTTTCGAAGTTTTAAATCAGATGTTTATAATATTTCTAATTTATCATGTCAATAAATTTTGTTGGAATTCCTTTTTAGACACATACAGTTCCATTTAGAGTTACTATTTTGTCTGTATTGCTTCAGTGAATTATAGAAATGTGTTATTTACCTGTATTCAGTGTTCAATTGTACATTCTGAAATGGAGGAATGTGATTTTTATAGTAAGTTTATACTAATTCTTAAAGATCGCTATGTCAATTGAGGTTTTGTGGCATTGTACTGGGTAACTTTTGAAGTTTTAAACTCTATGCATGGATGTTTATAATTTTGGTAGTCTATCATTTCAAGAAATTTTATTGGAATTCCTTTAGGCACAGATGGTTCCATTTTAGAGTTTCTATTTTATTTTTGTTTTGTGTTTTTGATGTGTATGGAGATGGATAACTACTTCGTATACCTTTTTAGCTCAAGAGTCTCTAAGAGTTATAATTTTTCGTGGTGTTGCTTGTGTTTCCTTTCCCAAATTTTTTATACATGATAAAGATAACCCTTAGAAAGATTTCTTTCAACATCAATAGGATGTTTTGTTGGCAGTGTTCAGGAAAGCGATGAAGCGAAGTGATGCGAGCCTTCTACGCTTCACAGACTAGAATGAGTATGTGTGCGCTTCATCGCTTAAAGCGAGTGCTTCATCGCCTAAAGCGTGAAGCATAGCCTTATCGCTTTTTACCGCTTCACGCTTCCCTGAACACTGCTTGTTGGTGTTTAGTCCATAGCAATTAACAAAGGTTGGTAGGTAATAGCTTACTTTATGATATATGGTTATGACTCTTCCATGAATTACATGACAACCAAAACTCCCCACTGGAGATTCCATCCCACTCTTCCTTGGCTGCTGTAATTGTTTGTTTAATCCCTTTTCATTTTTCATGCCTGCCACCTCCTCAATGATTAGCAATATCAAGCTGAATTGGGCATGGCATTTACGAGGCTGGATAATCATAGACATGTTGTCACCTTCTGCTCCGTACGGGGAAAAAGAGCACAATGAAAGATGTGTTGACAATTAGTAGACAAGGGAATCATAAATGCATGGTGTCCTTAATATGGGAAAACACATCTATTTGAGTGGAAATATTACGGGAAAAGAGGACTTGACAATACGATAGGTAGGGTAGAGTTACCTGCCATTTTAATGAAGCCCTTAAGACAAACATGTAAAAAGGGGAGGACAAGAATAGTAGTACATGGAGGAGAAGTACGGAGGGAGGAATGCAAAAATAAAATGGAAATAAGGTGGGCATGGAAGCATGTTATCAACCACTTTCGATGGCAAATCCATAAAAAAGAACGACACGGTGTGTGTGACAATTCTTCCCCATGTTCACTAAGAAAATTTGGAATGCAATGCATTGTCAGAGACTTTATTGTTTGTACTTGTGACATTTTTTAAGAATGGATTATAGTTGACCCAAATTGAATAGCTGCTTTTGCTTTTCGGTTTGTGAGTTAAAAAAAAGGCTATTGTCAAGAAAACCCTTATTTCTTTGTTTTTCGTAGGAAAATATCCCCAATAGTAGAAGGTATCCAGTGCTGCAATTCTGCCTGTGATTGTGCTGAGTTGCTCTGTGCATTGTTATTCAAGTGATCATGCCATACCTAGTTGTTTATATCCCTGTTTAGATGTTCGCACTGCAGTTCCTTCGCTAAAAATACAAGTCCTCTTTCCTATTTTACCTTTCTTTGACAAGGTTACATGTCCTAATTATGCCATTCTATCAAATTCATGGCATGCTAGCTTTCCACTAGTCTGAGTTCAGAGTCGTGTGTGTATCAGAATTTGGGAGATCAAATATTTTCCTTTTACTGTTAGGTCTCGTAGCTCATACGCAATGTCATTTTGAACATGATATTTACCTTTCTTTAAAAGTATCTACGTAGCTAATATCTTATGGATGGTATTGTTTTACTGCTATTTCTTTTTCTGGATCATATACGTTTACATTAGATGTTGTTTTACCAGTTTCAATAAAAGTTGTATATTTGATCTAGATGTCTTTATATAAATAATATATGGAAAGACGTTGCCAGTATTTGGAAGTTCGAGTCCAAATATATGTGTGGGTACTTGTGTAGAAGTAGAAGACATGTGTTACATTTTCAAATGTTTGTTGTCAGAGGGTGGACTTCCATACGTATACATACTGAGATTTAGTAGAATGATGACATTTGGAAGTAACAACCACTCTTCTTGCTTGTTTTTCAAATGAGTTCTCTTTTATTTTATAGAGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGATACAGAGAGGTAAATGCAACTCTTCTTCACGCCCTTAGTGGTTTTGGGACTGGTTTCTCATATGAACCGCTTTATTGTCTTTATTTTATGTTCTATTAGGCTTCCTCATTATTTGGTTTGCGAGGAAATTGATAAAAGAATATATGGACTATTGCATTTGCCAATTGCCATCTTCTTAATGTTGCACTGTGTATTTTTGGTTTATATGGACTGCACTATTGTTGTTTTAAGGTTTTGTTCAATTGAGTTTTTTCTCATAATCAACTAAGTAAATGTTGTTTCTTTGGTTCCTGGACAATTTTCTCTGCTGGGTTGCATGGGTCAATCAATGGTGTTGTAGATGGAGGTACACAGTTCTCCACATCACTGAGATAGATTTCCTTATTTTCTGCATCTCTGATTTTTCATTAAAATTGTATTGTGATTTGAAACTAATATCAGGGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAGGTAAGGTGGTTGTATTTTATTTTGTTCTTTCTTTAGCTCATTTGCTTCACCATTTAGTAGTTCTTACGTGGATATTATCTAATAAGACACGCAATACTTCTTGTGGAAATTGACAGTTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAAGTAAGTTTTTCTCGTACCCAAAAAGTCTTTTTAATGATGTGCTTTTCATCTTTAAATGTTTTACAGGCAGCTTCTCTTCAATAAACTCAACCCTCATGTCATGACTTAGCAGGATCTCTTTTGCGTTTTGTGACACATTTTCTATATCAGGCAACAAACAGTTTGTTGCTCTGTTGCATCAGTCGATGCTACATTTTAGAAAGTAACATTGACTCATTTATAAATAAACCTAGAGCCAACAAATTTCCAAAACTGATTAACATTATTTTATTTCCATTACAATGATTGCTCCAGCCAAACAGATTCACTAAGAAACTAGCCTTCATGGAAGAAATGGTAGCTGGAACTCCCTCAACTTAGCTTTGGTCCTTCCCTTCCATGATGTCCAAAATATAGAGTTTTTGATGGATTGTCAAAGCATTCTCTCTATCTTTGCAGTATGCCTTAATGCAACACTTATAGAAATAAGTCATTGTCGAAATAAGAAGCAATTAACTCCCTTATATATTCAAGTAAAATATTGCAAAGAAGCCAAAATACTGCTGTTTCCACAAGTCCGATAATATATGCAAATTACAACAACAACATACCCAGTAAAATCCCACTAAGTGGGGTCTAGGGAGGGTAGAGTGTACGCTGACCTTATCACTCCCTTATGGGGGTAGAGGGGTTGTTTCCGAAAGACCCTCGGCTCAATTATTTTTCTTTTGAGGGGCTTTTGGGCCGGGAAGGGTTGGAATAGCGAGTGGCCGGATGAGCAAGGGAAGCTTAAATTATTAAGAATCCTTAATTGTCTATTTATGTTTCACATACTTGTGTTACCTACAACTAGTGAGCCTTGAAATGAGTACCCATTAATTCGCGATCTCAGAATTACAATCCGAGGCTGTGTTGATGAGATCCTTCAAAATACACGCAACCATGTCAATCCTACACAATTTGGTATCCATGTGGGATCGACACATTTGATTTGGTCAAATGTATCGTGGGTGCTTTGACGAAATCTATGGCGAAGAAGTATATGTTGATTAGGTATTTGTTTTGCTTATGTTCTATATATATTTAGATATTTACTAGAACACTTAGTTTTTATATGAACTATCTTATGGATAAACTACTAAGGGGTCGTTTGGTGATATGTATAAGGGAACTTAATACTGGGATAATTGTTGATAATTGTTGAGTACTCTTGATAATCCCTTATTTGGTTTCAAAGTTTGGCATAGCTCCATTCCAGGATTAGTAATTAGTACTAGGATAAGTTATCCCTATCTTTGGGTGGAATAGTAATATCAGATGACTTATCCCGAGATAAACTAGGTAAAATGATAAAAGTATCCCCTTAAACCCTATTTGTATATCACTCTTTAGTTTTCATATTCATGTATATTCACATCATTTTTGATATGATGCATAATAACATTCACAATCTTCACTACTCATTATCTTTATGACGATTCTTCATATTTTTCCATTAAAAATTCACACTTTATAAATATAATTCTTACTTATGAATATATTATATGCTGTATTCATTTAACCAATTTTTATCTTTATTCATATTTTGATTTCTCTACTGCTAGATTACATGTTTTTAATTAATTATTCCTTTAGTCACTTGAAATTTTGTATTTTATATATCAATTAAAATGAAGTTTAACTTTAATATTTTACAGTTTAAGAGTGATATGTGTTTAAGTGAAGTGACATAAATAATAAAATGAAAGTTTTATTTTTAAGCTAAATAATATGGAAGTTTTTATTTCATAAATAAAATAAGATGAGAACTTTATTTTTGAACACATACGGCACAATCATGGAAATAAACACACAAAAATATTAAGTCAAATAAGATGAAATTTTTATTTTTAGGAATAAATTACCAAAGCTTGCAAAGAAAATATAAAAAACTGGGTATTTCTATAAACAAATAATTTGTTCTTAGAAAATATGCGATGCATATCATTTTGAATATAACAAACGAGACAGGATAAGAGATAATCCTAGCATAACTAATCCTAGCATAACTTATCCCAACATAATGTTTCTTAGCATAACTTGTGAGTATATCTTTCACACATTAATTTCAGAAAATCAGACCCTGACATGCAACTAAGGAGCAAACATGACATACTTACAATTTTATCACAAACACATAAAGGAAATACCTGAACTTTTCTTCAAAGACATTCTTAACCTATGTAAATGGCCGGTACTTAACCAAAGAGCTTGTTATGCCAGAAATCGATAGGCTTCAACTGGATTACCCAGCTTCGGCATAATAAACCTAGAAAATATATTGACTTGCCGGAAAAGGTTTTTAAGTTTTGAAGCTTTGCTATCTCTGGTGGAGTCTAGCTAGACAATTTACAATTGATAGGCATCAAGCCAGATTAGTTGTTGTAAGTTCACTATTTTTGGGTGGTATCTTCAACAAAAAGGAAGTATTGTAGTATCTGGTATAGAGTTTAGTTTCCGAAGTGTCCAATGATTTTCGATCGCTGGTGGTATCTCGGTGTCCAACTCATTTTCAAAAAAGCACAAGGCAATGTCACCCACATTTGGTGACTGTTAGGGGTCATTTGGTTTGAAGTTATGATTAAATTAATTATGATGGGATAAGTTATACTGTGATTAGTAATGATGGATTAGTTATGTTGGGATTGTTCATTCTGAGATTATTTCTTATTGATGGTTTGGTTATATTCAAAATAGTGTGCATTGCATAAATTTTAAGAAGAAGTTGTTTGTTTACAAAAATAACCTTCACTTTGTTAGTTTTTTACATTTCTTTGCAAGTTTTACTTATTCATTCTTAAAAATAATACTTTCATCTTATTTCACTTAAATATTTTTGTGTGTGCATTCTCATGATGGTATAAAATGTATTTTAAAATAAAATCTTTCTTCTTATTTAGGCTAAATAGAACTTCCATCTTATGTTAGTTAAAGTAAATGAGTATTTATTATTTGTATTGCTTCATTTGAGAGCATATCTCTTAAATAGTAACATATTAAAATTAACTCCATTTTAATTGATGTACAAAATACAAGCTTTCAAGTGACTAAAATAATATACAATTAAATATATGTAATTCAACTGTAGGGAAATCAAAATATAAGTAACCATTAGAACTAGGCAAATAAATTCATAAACAAAAATTATATTTGTACAATGTAATTATCTAATAGACAAATATAAAGAATTATCATAACAATAAGAAGTGGTGAAGGTTGTGAATGTCATATTGTACATGGTATTAAAAATAATGTGAATATACATGAATGTGAAAAGTGATATATAAAAAGTATTTAAAGAGATATCTTTGTCATTTTATCTCGAAATTACAATTCCAGCCAAAGATTGGGATAACTTTATCCCCATACTAATTATTAACCTTGAGATAAGTTATCCTAAACTTCGTAACTAAACAAGGAATTAAATGTTACTCAAAATTTATACCGGGATTAACTCTCGTTATCCTATATACCAAACAACCCCTCATTGTTGTGTTCAATAGGCACAATTTGCACGTACTTCAGGTGTTCCGTTGGTCGCTCTCATCTAAAAGAAAGTTTTTGTCAAGTTCAAGGTGCTATCTCGGTATTTTGACTTTTTATTCATGTCATGAAATTAAAATGGAGAGAAAAACCATTAAGAACGAGTCAGTTTTTTTTTGACAATTGGTAAGTAGTATTCTTCAATGAGAAATAGAAAAGGAGGGGTTTCTATATTCCCTCTTGGTGCTCTCTCTGTAATGAGACTAGGAAACCAACAACCATTTGTTCCTCCGTTGCAAAGTCACAACACAATTGTGGAACCTTTTTTTTTGTTTTACACATACAGAATGCCTGAGCATACAACAAAACTACTTGGTTGCTGGATCAACAGAGGGGGAAGAAAATCTAAGAAAAAGTGGTGGAGTATAATGCCATCAAGCATCTGGTGGTGTATTTGGAAAGAATGAAATAACATATGCTATGATAACAAAGCTAATTCAATAGAAAGTCAAATAGAACTGCTTGACTACTTCTTATTTTTGGTGCAAAGAGGAAGGGATAAAAGAAGCTGCACAAATTTTAGATTTTATAGGCACTTTGTAATTTATTAGCCTTTTGTTTTTTTCTCTTGTTGGAAACTAATTTTTGGAGGTCTCCAACATATCCTTAATGCTGATGAATACAATATTATCTTTATCAGAAAAAAAAAGATTCGATAAACTCAGAAGAAACTTCCTTTTGAATACAATGATGGAGCCCTTTACTTCTTTGCCTTTTTTCCAAAGGAAGTCTCTTCTGAGTTTATCTAAAAAAAAAATTGATAAAGATAATGTTGTATACATCAGCATCAAGGATATGTTGGAGACCTTCAATAATTAGTTTCCCACAGGAGAAAAAACAAAGGTGATGCTAATAGATTACAAAGTGCCTATAAAATCCAAAATTTGTGCAGCTTCTTCTATTCCTTCCTCTTTACACTAAAAATAAAAAGTAGTCAAGCAGAGTTCCATTTTACTTTCTCTATTGGATTAGCTTTGCTATCATAACATCTGCTATTTCTTTCTTTCCAAATACACCGCCAAATGCATGATGTTATTATACTCCACTTTTTCTTAGATTTTCTCCCCCCTCTGTTGATCCAACAACTAAGTAGATCTGTTGTATGCTCAGGCATAAACCATTTTGTATGTGCTAGTCCCAAAAAAATGTACCACAATTGTGTTGTCACTTCGCAATGGAGGAACAAATGGTTGTTGGTTTCCTCAGTCTCATTACAGAGAGAGCACTAAGAGGCAACATAGAAACCCCTCCTTTTCAATTTCTCATGTGTGGAGCATGCTCTTCTGGCAACCAACCAAGAGAAACACTTTACCTTGGTTGGCACCTTGTTCCTCCAAATCTGCTTCCAGGGGCCAAGCTTACCACCTGGATGCTCCTTCACCTCCTTAATATATAGCTTGTTAACAGAAAGGCTACCATCTCTTGAGTGTTTCCATATGATAGAATCTTTTTCTGCCGATAACCCATTGAGAACATGTAAGTCATTTAAATGCCTTCTAAACACAATATTCCATCCATAAATAGACCAAACCCCAGCCACTGTTTCGTCCGGATTTGTACACAAGGAGAATAGGTCAGGAAATAATATTATCAGTGTCTCATTTCCATTCTAATTCTCTTTCCAGAATAGGATTCTCGTCCCGTTTCCCACCGTGTAGACTATGTTTCTACTTAGATCGTCCACAAATTTCTTATTGTTCTCCAAACTGACACCCCATAACTGCTATTCACAGAGTTGGAGACCCAATTTCCATTCAACCCGTACTTGTTGACTATCACCTCCCTCCATAGTGCTTCTTCCTTAGTGTTGAACCTCCATTGCCATTTTGACAAGAGACATCTTTTCTGCAACCCCAAGTTTCTGATTCTAAGTCCACCAGATTGCTTATGTAACTGTGCAAGATTGTTTATGTAACTGTGCAGTCTGCTACTTGACTATATGCAAACCCTTCCCTTCTTTATTGCCTTCCACAAGAAATCTGTTCTCAGTTTGTCAAGTCTTTCTTCCACTTTGGCAGGCATAGGGAATAAAGACATAACATAAGTTGGAAGAGAGTCCAACACAGAGTTTACTGAAGTGACTCTCCCTCCCAAAGAGATATACTGAGCTTTCCAATTGGCCAATTTCTTCTCTGTCTTTTCAATTATGCCGCCCCAAATTTCTAGCTCCTTGTGATTGTGCCCCAATGGCATGCCCAAGTAAGTAGTGGGAAGCTGTTCTACTTTACACCCAATATCCTTGCCAGGCTCTGAAGTTGAGGAACTTCTTTAATTGGAAAGATGCTGCTTTTCCTCCAATTTATAGATAAACCCGAGACTGCTTCAAAAACCACCAGAGTCACTCTTATAAAGGCAACCTGTTCAGCCTTGGCTTCACTGGAAGTAATTGTGTCATCTGCATAAATCAGATGACAAATCTGCATTTCCCTTCCTCAAGAGTTGCGGACCTTGAAGCCTTTTAACCAATTGTTTTGGGTAGCTACTCTCATCATACTATTGTAGCCCTCCATCGCTTGGATGAAAAGAAAGGAGAGAGTGGGTCTCCCTGCCTTAAACCCCTTTCGGATGGGAAAAAACCAGCAGGTTCTCCATTCACTAATTGGAAAACCTAACAGTTTTTATGCAATAATCGATCCAATTCAGCTATTTCTCCCCAAAACCCATTTGTTTTAGAATCCTGATAAGGAATCCCAATTGACATGATCGTAAGCCTTCTCTATGTCCAGCTTGCTCATAATTCCTGGATCATCTCCTTTAACTCTGATGTCCACACACTCACTTGCTATAAGTGCTGCATCAATAATCTGCCTACCTTTTATGAAGGCCATCTGGTGTTTAATAACAAGCTCACTGATCACTTTCTTTAACCTTTGTGCTAGTATCTTAGCAAATGATCTTGTATATTCCACCTATCAAACTTATAGGTCTGAAATCTCTCAGTTCCACAACTCCCACCTTCTTGGGGAACAATGCCACATAGGTTGCATTTAGGCTCTTCTCAAACACTTGCTCGGAGCCGGGTATGGGTATGCGATACAAGTGTGGATCTGAAGGTTGGATTTTTTATCATATAAATTTTAGGATTCAGGGTACGGATCCGAGATATCTATTATCTTATTTATAAGATATCTCCTGTAATACCAAAATTTTATCTTATTTTATATAGCTATATATATGAATATAAACCCAAAAAATAAACTAAATACCAGATCGATCTATACTTCTTGATTATAAATGCAGTCAAAACACTCAAGTTAAGTTGATTGAATTTGATGTGGATCCCACACCTACATGGCTACACCCACAACCAAATCGATCATGGATGTGTCAAGGATTTTGAAGGGTCCAAGAAACATAGCTCCAATGGACTTCAATTGTTCTTGGCACTTGTGTTTCTTTTGTAATTTTTACAGTTACATGAATGTCAGCAACTCAGCATGTTATGGCACTCTTGAGGCTCGATTGCTCTTAGATTATTCAAATTGGCATATTTCTCCTTGTAGCTTATTCAGTTTCTAATCACACTTATTTATTTGTTCATGTAGGATGAACAAA-GAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAG</genome_strand>
        <mrna_strand>TGTGCGTAAAAATAGGTTCTTCCTCTGGCAGTCGCTGCCGTTGGATCTATGTGTATAGC-G-CAG--A--AAAGCTCAGCATCCATTTTCCGGCCAAATTCCTTTCTCAAACAAAAACTAACAAAATATTCTCTTGGATCAACCTCTACCTACGATCATCCATAAAGTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAAAAGGCATTGCCTGCTAATGGAAAGATCGCAAAGGATTCTAAGGACACTGTTCAGGAATGTGTATCTGAGTTCATCAGTTTTATTACTAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGGTACAGAGAG...........................................................................................................................................................................................................................................................................................................................................ATGGAG...............................................................................................GGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGAAGTCAGCTTGGGTCCAATACGCAG....................................................................................................................TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACAAAGGAACTTTGGATGCATACCAAAAAAAAAAGTGAATACATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611940" ref_strand="+" ref_description="SGN-E611940 [61697]">
      <seq>ccaaggtaaagtgtttctcctggttggttgccagaagagcatgctccactcatgagaaattgaaaaggaggggtttctatattgcttcttggtgctctctctgtaatgagactgaggaaaccaacaaccatttgttcctccattgcaaagtgacagcacaattgtggaacctttttttgggactaacacatacagaatggattatgcctgagcatacagcagatctacttagttgctggatcagcagaggggggagaaaatctaagaaaaagtggtggagtataataccatcatgcatttggtggtgtatttgggaagaaagaaatagcagatgctatgataacaaagctaattcaatagagaaagtcaaatggaactgcttgactactttttatttttggtgtaaagaggaagggatagaagaagctgcacaaattttggattttataggcactttgtaatctatttgccttttttgttttttctcttgttggaaaccaatttttggaggtctccagcatatccttaatgctgatgaatacaaccattatcttttatcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="+" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="42541" stop="43611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42841" g_stop="43403" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="+" ref_id="SGN-E611940" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42841" e_stop="43403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGTAAAGTGTTTCTCTTGGTTGGTTGCCAGAAGAGCATGCTCCACACATGAGAAATTGAAAAGGAGGGGTTTCTATGTTGCCTCTTAGTGCTCTCTCTGTAATGAGACTGAGGAAACCAACAACCATTTGTTCCTCCATTGCGAAGTGACAACACAATTGTGGTACATTTTTTTGGGACTAGCACATACAAAATGGTTTATGCCTGAGCATACAACAGATCTACTTAGTTGTTGGATCAACAGAGGGGGGAGAAAATCTAAGAAAAA---GTGGAGTATAATAACATCATGCATTTGGCGGTGTATTTGGAAAGAAAGAAATAGCAGATGTTATGATAGCAAAGCTAATCCAATAGAGAAAGTAAAATGGAACTCTGCTTGACTACTTTTTATTTTTAGTGTAAAGAGGAAGGAATAGAAGAAGCTGCACAAATTTTGGATTTTATAGGCACTTTGTAATCTATTAGCATCACCTTTGTTTTTTCTCCTGTGGGAAACTAATTATTGAAGGTCTCCAACATATCCTTGATGCTGATGTATACAA-CATTATC-TTTATCAATTT</genome_strand>
        <mrna_strand>CCAAGGTAAAGTGTTTCTCCTGGTTGGTTGCCAGAAGAGCATGCTCCACTCATGAGAAATTGAAAAGGAGGGGTTTCTATATTGCTTCTTGGTGCTCTCTCTGTAATGAGACTGAGGAAACCAACAACCATTTGTTCCTCCATTGCAAAGTGACAGCACAATTGTGGAACCTTTTTTTGGGACTAACACATACAGAATGGATTATGCCTGAGCATACAGCAGATCTACTTAGTTGCTGGATCAGCAGAGGGGGGAGAAAATCTAAGAAAAAGTGGTGGAGTATAATACCATCATGCATTTGGTGGTGTATTTGGGAAGAAAGAAATAGCAGATGCTATGATAACAAAGCTAATTCAATAGAGAAAGTCAAATGGAA--CTGCTTGACTACTTTTTATTTTTGGTGTAAAGAGGAAGGGATAGAAGAAGCTGCACAAATTTTGGATTTTATAGGCACTTTGTAATCTATTTGC--CTTTTTTGTTTTTTCTCTTGTTGGAAACCAATTTTTGGAGGTCTCCAGCATATCCTTAATGCTGATGAATACAACCATTATCTTTTATCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608758" ref_strand="+" ref_description="SGN-E608758 [24751]">
      <seq>gaaaagctcagcatccattttccgccaaattcctttctcaaacaaaaactaacaaaatattctcttggatcaacctctacctacgatcatccataaagttagggttccggtacactgagaatggcggagccggcaagtccaggaggcggcggcggaagccatgagagtggcggtgacccgagtcctcagtccaacttgcgagaacaggataggtacctaccgatcgctaatattggacgcataatgaaaaaggcattgcctgctaatggaaagatcgcaaaggattctaaggacactgttcaggaatgtgtatctgagttcatcagttttattactagcgaagctagtgacaagtgtcagaaagagaagagaaagacgatcaacggagatgatttactatcagccctggctaccttgggatttgaggactacattgaaccactgaaggtctatttgactcgatacagagagatggagggagatgccaagggatctgcaagggttggtgatgcatctgttagaaaagatgtagttggaagtcagcttgggtccaatacgcagttcatgtatgaaggttcttttgcacaacgcttagactatggaaactcctccgtgtgaatntaaaacagtggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="51579" stop="47435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51281" g_stop="50941" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50940" i_stop="48545" i_length="2396">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48544" g_stop="48415" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="471" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48414" i_stop="48084" i_length="331">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.359" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48083" g_stop="48078" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="477" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48077" i_stop="47983" i_length="95">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47982" g_stop="47899" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="561" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.716" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47782" g_stop="47719" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="625" r_length="64" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E608758" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51281" e_stop="50941"/>
          <exon e_start="48544" e_stop="48415"/>
          <exon e_start="48083" e_stop="48078"/>
          <exon e_start="47982" e_stop="47899"/>
          <exon e_start="47782" e_stop="47719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCTCAGCATCCATTTTCCGCCAAATTCCTTTGTCAAACAAAACTTAACAAAATATTCTGTTTGATCAACCTCTACCTACGATCATCCATAGATTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAGAAGGCATTGCCTGCTAATGGGAAGATCGCTAAGGATTCTAAAGACACGGTTCAGGAATGCGTATCTGAGTTCATCAGTTTTATTACTAGCGAGTAAGCTTCTATTTCGTTTCATGGTTCGATTCTATATGTTAAAATGCACTAATGCGAATTTTATAGTAAGTTTATAACTGAATCATAAAGATCAACTGAGGTTTTGTGGCATTGTACTGGGTAAGTTTCGAAGTTTTAAATCAGATGTTTATAATATTTCTAATTTATCATGTCAATAAATTTTGTTGGAATTCCTTTTTAGACACATACAGTTCCATTTAGAGTTACTATTTTGTCTGTATTGCTTCAGTGAATTATAGAAATGTGTTATTTACCTGTATTCAGTGTTCAATTGTACATTCTGAAATGGAGGAATGTGATTTTTATAGTAAGTTTATACTAATTCTTAAAGATCGCTATGTCAATTGAGGTTTTGTGGCATTGTACTGGGTAACTTTTGAAGTTTTAAACTCTATGCATGGATGTTTATAATTTTGGTAGTCTATCATTTCAAGAAATTTTATTGGAATTCCTTTAGGCACAGATGGTTCCATTTTAGAGTTTCTATTTTATTTTTGTTTTGTGTTTTTGATGTGTATGGAGATGGATAACTACTTCGTATACCTTTTTAGCTCAAGAGTCTCTAAGAGTTATAATTTTTCGTGGTGTTGCTTGTGTTTCCTTTCCCAAATTTTTTATACATGATAAAGATAACCCTTAGAAAGATTTCTTTCAACATCAATAGGATGTTTTGTTGGCAGTGTTCAGGAAAGCGATGAAGCGAAGTGATGCGAGCCTTCTACGCTTCACAGACTAGAATGAGTATGTGTGCGCTTCATCGCTTAAAGCGAGTGCTTCATCGCCTAAAGCGTGAAGCATAGCCTTATCGCTTTTTACCGCTTCACGCTTCCCTGAACACTGCTTGTTGGTGTTTAGTCCATAGCAATTAACAAAGGTTGGTAGGTAATAGCTTACTTTATGATATATGGTTATGACTCTTCCATGAATTACATGACAACCAAAACTCCCCACTGGAGATTCCATCCCACTCTTCCTTGGCTGCTGTAATTGTTTGTTTAATCCCTTTTCATTTTTCATGCCTGCCACCTCCTCAATGATTAGCAATATCAAGCTGAATTGGGCATGGCATTTACGAGGCTGGATAATCATAGACATGTTGTCACCTTCTGCTCCGTACGGGGAAAAAGAGCACAATGAAAGATGTGTTGACAATTAGTAGACAAGGGAATCATAAATGCATGGTGTCCTTAATATGGGAAAACACATCTATTTGAGTGGAAATATTACGGGAAAAGAGGACTTGACAATACGATAGGTAGGGTAGAGTTACCTGCCATTTTAATGAAGCCCTTAAGACAAACATGTAAAAAGGGGAGGACAAGAATAGTAGTACATGGAGGAGAAGTACGGAGGGAGGAATGCAAAAATAAAATGGAAATAAGGTGGGCATGGAAGCATGTTATCAACCACTTTCGATGGCAAATCCATAAAAAAGAACGACACGGTGTGTGTGACAATTCTTCCCCATGTTCACTAAGAAAATTTGGAATGCAATGCATTGTCAGAGACTTTATTGTTTGTACTTGTGACATTTTTTAAGAATGGATTATAGTTGACCCAAATTGAATAGCTGCTTTTGCTTTTCGGTTTGTGAGTTAAAAAAAAGGCTATTGTCAAGAAAACCCTTATTTCTTTGTTTTTCGTAGGAAAATATCCCCAATAGTAGAAGGTATCCAGTGCTGCAATTCTGCCTGTGATTGTGCTGAGTTGCTCTGTGCATTGTTATTCAAGTGATCATGCCATACCTAGTTGTTTATATCCCTGTTTAGATGTTCGCACTGCAGTTCCTTCGCTAAAAATACAAGTCCTCTTTCCTATTTTACCTTTCTTTGACAAGGTTACATGTCCTAATTATGCCATTCTATCAAATTCATGGCATGCTAGCTTTCCACTAGTCTGAGTTCAGAGTCGTGTGTGTATCAGAATTTGGGAGATCAAATATTTTCCTTTTACTGTTAGGTCTCGTAGCTCATACGCAATGTCATTTTGAACATGATATTTACCTTTCTTTAAAAGTATCTACGTAGCTAATATCTTATGGATGGTATTGTTTTACTGCTATTTCTTTTTCTGGATCATATACGTTTACATTAGATGTTGTTTTACCAGTTTCAATAAAAGTTGTATATTTGATCTAGATGTCTTTATATAAATAATATATGGAAAGACGTTGCCAGTATTTGGAAGTTCGAGTCCAAATATATGTGTGGGTACTTGTGTAGAAGTAGAAGACATGTGTTACATTTTCAAATGTTTGTTGTCAGAGGGTGGACTTCCATACGTATACATACTGAGATTTAGTAGAATGATGACATTTGGAAGTAACAACCACTCTTCTTGCTTGTTTTTCAAATGAGTTCTCTTTTATTTTATAGAGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGATACAGAGAGGTAAATGCAACTCTTCTTCACGCCCTTAGTGGTTTTGGGACTGGTTTCTCATATGAACCGCTTTATTGTCTTTATTTTATGTTCTATTAGGCTTCCTCATTATTTGGTTTGCGAGGAAATTGATAAAAGAATATATGGACTATTGCATTTGCCAATTGCCATCTTCTTAATGTTGCACTGTGTATTTTTGGTTTATATGGACTGCACTATTGTTGTTTTAAGGTTTTGTTCAATTGAGTTTTTTCTCATAATCAACTAAGTAAATGTTGTTTCTTTGGTTCCTGGACAATTTTCTCTGCTGGGTTGCATGGGTCAATCAATGGTGTTGTAGATGGAGGTACACAGTTCTCCACATCACTGAGATAGATTTCCTTATTTTCTGCATCTCTGATTTTTCATTAAAATTGTATTGTGATTTGAAACTAATATCAGGGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAGGTAAGGTGGTTGTATTTTATTTTGTTCTTTCTTTAGCTCATTTGCTTCACCATTTAGTAGTTCTTACGTGGATATTATCTAATAAGACACGCAATACTTCTTGTGGAAATTGACAGTTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA</genome_strand>
        <mrna_strand>GAAAAGCTCAGCATCCATTTTCCGCCAAATTCCTTTCTCAAACAAAAACTAACAAAATATTCTCTTGGATCAACCTCTACCTACGATCATCCATAAAGTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAAAAGGCATTGCCTGCTAATGGAAAGATCGCAAAGGATTCTAAGGACACTGTTCAGGAATGTGTATCTGAGTTCATCAGTTTTATTACTAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGATACAGAGAG...........................................................................................................................................................................................................................................................................................................................................ATGGAG...............................................................................................GGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGAAGTCAGCTTGGGTCCAATACGCAG....................................................................................................................TTCATGTATGAAGGTTCTTTTGCACAACGCTTAGACTATGGAAACTCCTCCGTGTGAATNTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560103" ref_strand="+" ref_description="SGN-E560103 [19706]">
      <seq>agcatcattttccgccaatcctttctcaacaaaaactaacaaaatattctcttggatcaacctctacctacgatcatccataaagttagggttccggtacactgagaatggcggagccggcaagtccaggaggcggcggcggaagccatgagagtggcggtgacccgagtcctcagtccaacttgcgagaacaggataggtacctaccgatcgctaatattggacgcataatgaaaaaggcattgcctgctaatggaaagatcgcaaaggattctaaggacactgttcaggaatgtgtatctgagttcatcagttttattactagcgaagctagtgacaagtgtcagaaagagaagagaaagacgatcaacggagatgatttactatcagccctggctaccttgggatttgaggactacattgaaccactgaaggtctatttgactcggtacagagagatggagggagatgccaagggatctgcaagggttggtgatgcatctgttagaaaagatgtagttggaagtcagcttgggtccaatacgcagttcatgtatgaaggttcttttgcacaaggcttagactatggaaactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="51572" stop="47435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51272" g_stop="50941" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50940" i_stop="48545" i_length="2396">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48544" g_stop="48415" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="458" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48414" i_stop="48084" i_length="331">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.359" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48083" g_stop="48078" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="464" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48077" i_stop="47983" i_length="95">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47982" g_stop="47899" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="548" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47782" g_stop="47735" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="596" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E560103" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51272" e_stop="50941"/>
          <exon e_start="48544" e_stop="48415"/>
          <exon e_start="48083" e_stop="48078"/>
          <exon e_start="47982" e_stop="47899"/>
          <exon e_start="47782" e_stop="47735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCCATTTTCCGCCAAATTCCTTTGTCAAACAAAACTTAACAAAATATTCTGTTTGATCAACCTCTACCTACGATCATCCATAGATTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAGAAGGCATTGCCTGCTAATGGGAAGATCGCTAAGGATTCTAAAGACACGGTTCAGGAATGCGTATCTGAGTTCATCAGTTTTATTACTAGCGAGTAAGCTTCTATTTCGTTTCATGGTTCGATTCTATATGTTAAAATGCACTAATGCGAATTTTATAGTAAGTTTATAACTGAATCATAAAGATCAACTGAGGTTTTGTGGCATTGTACTGGGTAAGTTTCGAAGTTTTAAATCAGATGTTTATAATATTTCTAATTTATCATGTCAATAAATTTTGTTGGAATTCCTTTTTAGACACATACAGTTCCATTTAGAGTTACTATTTTGTCTGTATTGCTTCAGTGAATTATAGAAATGTGTTATTTACCTGTATTCAGTGTTCAATTGTACATTCTGAAATGGAGGAATGTGATTTTTATAGTAAGTTTATACTAATTCTTAAAGATCGCTATGTCAATTGAGGTTTTGTGGCATTGTACTGGGTAACTTTTGAAGTTTTAAACTCTATGCATGGATGTTTATAATTTTGGTAGTCTATCATTTCAAGAAATTTTATTGGAATTCCTTTAGGCACAGATGGTTCCATTTTAGAGTTTCTATTTTATTTTTGTTTTGTGTTTTTGATGTGTATGGAGATGGATAACTACTTCGTATACCTTTTTAGCTCAAGAGTCTCTAAGAGTTATAATTTTTCGTGGTGTTGCTTGTGTTTCCTTTCCCAAATTTTTTATACATGATAAAGATAACCCTTAGAAAGATTTCTTTCAACATCAATAGGATGTTTTGTTGGCAGTGTTCAGGAAAGCGATGAAGCGAAGTGATGCGAGCCTTCTACGCTTCACAGACTAGAATGAGTATGTGTGCGCTTCATCGCTTAAAGCGAGTGCTTCATCGCCTAAAGCGTGAAGCATAGCCTTATCGCTTTTTACCGCTTCACGCTTCCCTGAACACTGCTTGTTGGTGTTTAGTCCATAGCAATTAACAAAGGTTGGTAGGTAATAGCTTACTTTATGATATATGGTTATGACTCTTCCATGAATTACATGACAACCAAAACTCCCCACTGGAGATTCCATCCCACTCTTCCTTGGCTGCTGTAATTGTTTGTTTAATCCCTTTTCATTTTTCATGCCTGCCACCTCCTCAATGATTAGCAATATCAAGCTGAATTGGGCATGGCATTTACGAGGCTGGATAATCATAGACATGTTGTCACCTTCTGCTCCGTACGGGGAAAAAGAGCACAATGAAAGATGTGTTGACAATTAGTAGACAAGGGAATCATAAATGCATGGTGTCCTTAATATGGGAAAACACATCTATTTGAGTGGAAATATTACGGGAAAAGAGGACTTGACAATACGATAGGTAGGGTAGAGTTACCTGCCATTTTAATGAAGCCCTTAAGACAAACATGTAAAAAGGGGAGGACAAGAATAGTAGTACATGGAGGAGAAGTACGGAGGGAGGAATGCAAAAATAAAATGGAAATAAGGTGGGCATGGAAGCATGTTATCAACCACTTTCGATGGCAAATCCATAAAAAAGAACGACACGGTGTGTGTGACAATTCTTCCCCATGTTCACTAAGAAAATTTGGAATGCAATGCATTGTCAGAGACTTTATTGTTTGTACTTGTGACATTTTTTAAGAATGGATTATAGTTGACCCAAATTGAATAGCTGCTTTTGCTTTTCGGTTTGTGAGTTAAAAAAAAGGCTATTGTCAAGAAAACCCTTATTTCTTTGTTTTTCGTAGGAAAATATCCCCAATAGTAGAAGGTATCCAGTGCTGCAATTCTGCCTGTGATTGTGCTGAGTTGCTCTGTGCATTGTTATTCAAGTGATCATGCCATACCTAGTTGTTTATATCCCTGTTTAGATGTTCGCACTGCAGTTCCTTCGCTAAAAATACAAGTCCTCTTTCCTATTTTACCTTTCTTTGACAAGGTTACATGTCCTAATTATGCCATTCTATCAAATTCATGGCATGCTAGCTTTCCACTAGTCTGAGTTCAGAGTCGTGTGTGTATCAGAATTTGGGAGATCAAATATTTTCCTTTTACTGTTAGGTCTCGTAGCTCATACGCAATGTCATTTTGAACATGATATTTACCTTTCTTTAAAAGTATCTACGTAGCTAATATCTTATGGATGGTATTGTTTTACTGCTATTTCTTTTTCTGGATCATATACGTTTACATTAGATGTTGTTTTACCAGTTTCAATAAAAGTTGTATATTTGATCTAGATGTCTTTATATAAATAATATATGGAAAGACGTTGCCAGTATTTGGAAGTTCGAGTCCAAATATATGTGTGGGTACTTGTGTAGAAGTAGAAGACATGTGTTACATTTTCAAATGTTTGTTGTCAGAGGGTGGACTTCCATACGTATACATACTGAGATTTAGTAGAATGATGACATTTGGAAGTAACAACCACTCTTCTTGCTTGTTTTTCAAATGAGTTCTCTTTTATTTTATAGAGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGATACAGAGAGGTAAATGCAACTCTTCTTCACGCCCTTAGTGGTTTTGGGACTGGTTTCTCATATGAACCGCTTTATTGTCTTTATTTTATGTTCTATTAGGCTTCCTCATTATTTGGTTTGCGAGGAAATTGATAAAAGAATATATGGACTATTGCATTTGCCAATTGCCATCTTCTTAATGTTGCACTGTGTATTTTTGGTTTATATGGACTGCACTATTGTTGTTTTAAGGTTTTGTTCAATTGAGTTTTTTCTCATAATCAACTAAGTAAATGTTGTTTCTTTGGTTCCTGGACAATTTTCTCTGCTGGGTTGCATGGGTCAATCAATGGTGTTGTAGATGGAGGTACACAGTTCTCCACATCACTGAGATAGATTTCCTTATTTTCTGCATCTCTGATTTTTCATTAAAATTGTATTGTGATTTGAAACTAATATCAGGGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAGGTAAGGTGGTTGTATTTTATTTTGTTCTTTCTTTAGCTCATTTGCTTCACCATTTAGTAGTTCTTACGTGGATATTATCTAATAAGACACGCAATACTTCTTGTGGAAATTGACAGTTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCC</genome_strand>
        <mrna_strand>AGCAT-CATTTTCCGCC-AA-TCCTTTCTC-AACAAAAACTAACAAAATATTCTCTTGGATCAACCTCTACCTACGATCATCCATAAAGTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAAAAGGCATTGCCTGCTAATGGAAAGATCGCAAAGGATTCTAAGGACACTGTTCAGGAATGTGTATCTGAGTTCATCAGTTTTATTACTAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGGTACAGAGAG...........................................................................................................................................................................................................................................................................................................................................ATGGAG...............................................................................................GGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGAAGTCAGCTTGGGTCCAATACGCAG....................................................................................................................TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425836" ref_strand="+" ref_description="SGN-E425836 [STM-45-L19]">
      <seq>ggcagtcgctgccgttggatctatgtgtatagcgcagaaaagctcagcatccattttccgccaaattcctttctcaaacaaaaactaacaaaatattctcttggatcaacctctacctacgatcatccataaagttagggttccggtacactgagaatggcggagccggcaagtccaggaggcggcggcggaagccatgagagtggcggtgacccgagtcctcagtccaacttgcgagaacaggataggtacctaccgatcgctaatattggacgcataatgaaaaaggcattgcctgctaatggaaagatcgcaaaggattctaaggacactgttcaggaatgtgtatctgagttcatcagttttattactagcgaagctagtgacaagtgtcagaaagagaagagaaagacgatcaacggagatgatttactatcagccctggctaccttgggatttgaggactacattgaaccactgaaggtctatttgactcgatacagagagatggagggagatgccaagggatctgcaagggttggtgatgcatctgttagaaaagatgtagttggaagtcagcttgggtccaatacgcagttcatgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="51588" stop="47592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51323" g_stop="50941" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50940" i_stop="48545" i_length="2396">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48544" g_stop="48415" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="507" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48414" i_stop="48084" i_length="331">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.359" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48083" g_stop="48078" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="513" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48077" i_stop="47983" i_length="95">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47982" g_stop="47899" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="597" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.716" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47782" g_stop="47773" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="607" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E425836" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51323" e_stop="50941"/>
          <exon e_start="48544" e_stop="48415"/>
          <exon e_start="48083" e_stop="48078"/>
          <exon e_start="47982" e_stop="47899"/>
          <exon e_start="47782" e_stop="47773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGTCCCTGCCGTTGGATCTGTGTATAGCGCAGAAAGCCATTAAAGCTCAGCATCCATTTTCCGCCAAATTCCTTTGTCAAACAAAACTTAACAAAATATTCTGTTTGATCAACCTCTACCTACGATCATCCATAGATTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAGAAGGCATTGCCTGCTAATGGGAAGATCGCTAAGGATTCTAAAGACACGGTTCAGGAATGCGTATCTGAGTTCATCAGTTTTATTACTAGCGAGTAAGCTTCTATTTCGTTTCATGGTTCGATTCTATATGTTAAAATGCACTAATGCGAATTTTATAGTAAGTTTATAACTGAATCATAAAGATCAACTGAGGTTTTGTGGCATTGTACTGGGTAAGTTTCGAAGTTTTAAATCAGATGTTTATAATATTTCTAATTTATCATGTCAATAAATTTTGTTGGAATTCCTTTTTAGACACATACAGTTCCATTTAGAGTTACTATTTTGTCTGTATTGCTTCAGTGAATTATAGAAATGTGTTATTTACCTGTATTCAGTGTTCAATTGTACATTCTGAAATGGAGGAATGTGATTTTTATAGTAAGTTTATACTAATTCTTAAAGATCGCTATGTCAATTGAGGTTTTGTGGCATTGTACTGGGTAACTTTTGAAGTTTTAAACTCTATGCATGGATGTTTATAATTTTGGTAGTCTATCATTTCAAGAAATTTTATTGGAATTCCTTTAGGCACAGATGGTTCCATTTTAGAGTTTCTATTTTATTTTTGTTTTGTGTTTTTGATGTGTATGGAGATGGATAACTACTTCGTATACCTTTTTAGCTCAAGAGTCTCTAAGAGTTATAATTTTTCGTGGTGTTGCTTGTGTTTCCTTTCCCAAATTTTTTATACATGATAAAGATAACCCTTAGAAAGATTTCTTTCAACATCAATAGGATGTTTTGTTGGCAGTGTTCAGGAAAGCGATGAAGCGAAGTGATGCGAGCCTTCTACGCTTCACAGACTAGAATGAGTATGTGTGCGCTTCATCGCTTAAAGCGAGTGCTTCATCGCCTAAAGCGTGAAGCATAGCCTTATCGCTTTTTACCGCTTCACGCTTCCCTGAACACTGCTTGTTGGTGTTTAGTCCATAGCAATTAACAAAGGTTGGTAGGTAATAGCTTACTTTATGATATATGGTTATGACTCTTCCATGAATTACATGACAACCAAAACTCCCCACTGGAGATTCCATCCCACTCTTCCTTGGCTGCTGTAATTGTTTGTTTAATCCCTTTTCATTTTTCATGCCTGCCACCTCCTCAATGATTAGCAATATCAAGCTGAATTGGGCATGGCATTTACGAGGCTGGATAATCATAGACATGTTGTCACCTTCTGCTCCGTACGGGGAAAAAGAGCACAATGAAAGATGTGTTGACAATTAGTAGACAAGGGAATCATAAATGCATGGTGTCCTTAATATGGGAAAACACATCTATTTGAGTGGAAATATTACGGGAAAAGAGGACTTGACAATACGATAGGTAGGGTAGAGTTACCTGCCATTTTAATGAAGCCCTTAAGACAAACATGTAAAAAGGGGAGGACAAGAATAGTAGTACATGGAGGAGAAGTACGGAGGGAGGAATGCAAAAATAAAATGGAAATAAGGTGGGCATGGAAGCATGTTATCAACCACTTTCGATGGCAAATCCATAAAAAAGAACGACACGGTGTGTGTGACAATTCTTCCCCATGTTCACTAAGAAAATTTGGAATGCAATGCATTGTCAGAGACTTTATTGTTTGTACTTGTGACATTTTTTAAGAATGGATTATAGTTGACCCAAATTGAATAGCTGCTTTTGCTTTTCGGTTTGTGAGTTAAAAAAAAGGCTATTGTCAAGAAAACCCTTATTTCTTTGTTTTTCGTAGGAAAATATCCCCAATAGTAGAAGGTATCCAGTGCTGCAATTCTGCCTGTGATTGTGCTGAGTTGCTCTGTGCATTGTTATTCAAGTGATCATGCCATACCTAGTTGTTTATATCCCTGTTTAGATGTTCGCACTGCAGTTCCTTCGCTAAAAATACAAGTCCTCTTTCCTATTTTACCTTTCTTTGACAAGGTTACATGTCCTAATTATGCCATTCTATCAAATTCATGGCATGCTAGCTTTCCACTAGTCTGAGTTCAGAGTCGTGTGTGTATCAGAATTTGGGAGATCAAATATTTTCCTTTTACTGTTAGGTCTCGTAGCTCATACGCAATGTCATTTTGAACATGATATTTACCTTTCTTTAAAAGTATCTACGTAGCTAATATCTTATGGATGGTATTGTTTTACTGCTATTTCTTTTTCTGGATCATATACGTTTACATTAGATGTTGTTTTACCAGTTTCAATAAAAGTTGTATATTTGATCTAGATGTCTTTATATAAATAATATATGGAAAGACGTTGCCAGTATTTGGAAGTTCGAGTCCAAATATATGTGTGGGTACTTGTGTAGAAGTAGAAGACATGTGTTACATTTTCAAATGTTTGTTGTCAGAGGGTGGACTTCCATACGTATACATACTGAGATTTAGTAGAATGATGACATTTGGAAGTAACAACCACTCTTCTTGCTTGTTTTTCAAATGAGTTCTCTTTTATTTTATAGAGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGATACAGAGAGGTAAATGCAACTCTTCTTCACGCCCTTAGTGGTTTTGGGACTGGTTTCTCATATGAACCGCTTTATTGTCTTTATTTTATGTTCTATTAGGCTTCCTCATTATTTGGTTTGCGAGGAAATTGATAAAAGAATATATGGACTATTGCATTTGCCAATTGCCATCTTCTTAATGTTGCACTGTGTATTTTTGGTTTATATGGACTGCACTATTGTTGTTTTAAGGTTTTGTTCAATTGAGTTTTTTCTCATAATCAACTAAGTAAATGTTGTTTCTTTGGTTCCTGGACAATTTTCTCTGCTGGGTTGCATGGGTCAATCAATGGTGTTGTAGATGGAGGTACACAGTTCTCCACATCACTGAGATAGATTTCCTTATTTTCTGCATCTCTGATTTTTCATTAAAATTGTATTGTGATTTGAAACTAATATCAGGGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAGGTAAGGTGGTTGTATTTTATTTTGTTCTTTCTTTAGCTCATTTGCTTCACCATTTAGTAGTTCTTACGTGGATATTATCTAATAAGACACGCAATACTTCTTGTGGAAATTGACAGTTCATGTATG</genome_strand>
        <mrna_strand>GGCAGTCGCTGCCGTTGGATCTATGTGTATAGC-G-CAG--A--AAAGCTCAGCATCCATTTTCCGCCAAATTCCTTTCTCAAACAAAAACTAACAAAATATTCTCTTGGATCAACCTCTACCTACGATCATCCATAAAGTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAAAAGGCATTGCCTGCTAATGGAAAGATCGCAAAGGATTCTAAGGACACTGTTCAGGAATGTGTATCTGAGTTCATCAGTTTTATTACTAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGATACAGAGAG...........................................................................................................................................................................................................................................................................................................................................ATGGAG...............................................................................................GGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGAAGTCAGCTTGGGTCCAATACGCAG....................................................................................................................TTCATGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612148" ref_strand="+" ref_description="SGN-E612148 [61907]">
      <seq>ctgccgttggatctatgtgtatagcgcagaaaagctcagcatccattttccgccaaattcctttctcaagcaaaaactaacaaaatattctcttggatcaacctctacctacgatcatccataaagttagggttccggtacactgagaatggcggagccggcaagtccaggaggcggcggcggaagccatgagagtggcggtgacccgagtcctcagtccaacttgcgagaacaggataggtacctaccgatcgctaatattggacgcataatgaaaaaggcattgcctgctaatggaaagatcgcaaaggattctaaggacactgttcaggaatgtgtatctgagttcatcagttttattactagcgaagctagtgacaagtgtcagaaagagaagagaaagacgatcaacgggagatgattatactattcagccctggctaccttgggatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="51588" stop="48161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51315" g_stop="50941" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50940" i_stop="48545" i_length="2396">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48544" g_stop="48461" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="456" r_length="87" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E612148" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51315" e_stop="50941"/>
          <exon e_start="48544" e_stop="48461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCGTTGGATCTGTGTATAGCGCAGAAAGCCATTAAAGCTCAGCATCCATTTTCCGCCAAATTCCTTTGTCAAACAAAACTTAACAAAATATTCTGTTTGATCAACCTCTACCTACGATCATCCATAGATTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAGAAGGCATTGCCTGCTAATGGGAAGATCGCTAAGGATTCTAAAGACACGGTTCAGGAATGCGTATCTGAGTTCATCAGTTTTATTACTAGCGAGTAAGCTTCTATTTCGTTTCATGGTTCGATTCTATATGTTAAAATGCACTAATGCGAATTTTATAGTAAGTTTATAACTGAATCATAAAGATCAACTGAGGTTTTGTGGCATTGTACTGGGTAAGTTTCGAAGTTTTAAATCAGATGTTTATAATATTTCTAATTTATCATGTCAATAAATTTTGTTGGAATTCCTTTTTAGACACATACAGTTCCATTTAGAGTTACTATTTTGTCTGTATTGCTTCAGTGAATTATAGAAATGTGTTATTTACCTGTATTCAGTGTTCAATTGTACATTCTGAAATGGAGGAATGTGATTTTTATAGTAAGTTTATACTAATTCTTAAAGATCGCTATGTCAATTGAGGTTTTGTGGCATTGTACTGGGTAACTTTTGAAGTTTTAAACTCTATGCATGGATGTTTATAATTTTGGTAGTCTATCATTTCAAGAAATTTTATTGGAATTCCTTTAGGCACAGATGGTTCCATTTTAGAGTTTCTATTTTATTTTTGTTTTGTGTTTTTGATGTGTATGGAGATGGATAACTACTTCGTATACCTTTTTAGCTCAAGAGTCTCTAAGAGTTATAATTTTTCGTGGTGTTGCTTGTGTTTCCTTTCCCAAATTTTTTATACATGATAAAGATAACCCTTAGAAAGATTTCTTTCAACATCAATAGGATGTTTTGTTGGCAGTGTTCAGGAAAGCGATGAAGCGAAGTGATGCGAGCCTTCTACGCTTCACAGACTAGAATGAGTATGTGTGCGCTTCATCGCTTAAAGCGAGTGCTTCATCGCCTAAAGCGTGAAGCATAGCCTTATCGCTTTTTACCGCTTCACGCTTCCCTGAACACTGCTTGTTGGTGTTTAGTCCATAGCAATTAACAAAGGTTGGTAGGTAATAGCTTACTTTATGATATATGGTTATGACTCTTCCATGAATTACATGACAACCAAAACTCCCCACTGGAGATTCCATCCCACTCTTCCTTGGCTGCTGTAATTGTTTGTTTAATCCCTTTTCATTTTTCATGCCTGCCACCTCCTCAATGATTAGCAATATCAAGCTGAATTGGGCATGGCATTTACGAGGCTGGATAATCATAGACATGTTGTCACCTTCTGCTCCGTACGGGGAAAAAGAGCACAATGAAAGATGTGTTGACAATTAGTAGACAAGGGAATCATAAATGCATGGTGTCCTTAATATGGGAAAACACATCTATTTGAGTGGAAATATTACGGGAAAAGAGGACTTGACAATACGATAGGTAGGGTAGAGTTACCTGCCATTTTAATGAAGCCCTTAAGACAAACATGTAAAAAGGGGAGGACAAGAATAGTAGTACATGGAGGAGAAGTACGGAGGGAGGAATGCAAAAATAAAATGGAAATAAGGTGGGCATGGAAGCATGTTATCAACCACTTTCGATGGCAAATCCATAAAAAAGAACGACACGGTGTGTGTGACAATTCTTCCCCATGTTCACTAAGAAAATTTGGAATGCAATGCATTGTCAGAGACTTTATTGTTTGTACTTGTGACATTTTTTAAGAATGGATTATAGTTGACCCAAATTGAATAGCTGCTTTTGCTTTTCGGTTTGTGAGTTAAAAAAAAGGCTATTGTCAAGAAAACCCTTATTTCTTTGTTTTTCGTAGGAAAATATCCCCAATAGTAGAAGGTATCCAGTGCTGCAATTCTGCCTGTGATTGTGCTGAGTTGCTCTGTGCATTGTTATTCAAGTGATCATGCCATACCTAGTTGTTTATATCCCTGTTTAGATGTTCGCACTGCAGTTCCTTCGCTAAAAATACAAGTCCTCTTTCCTATTTTACCTTTCTTTGACAAGGTTACATGTCCTAATTATGCCATTCTATCAAATTCATGGCATGCTAGCTTTCCACTAGTCTGAGTTCAGAGTCGTGTGTGTATCAGAATTTGGGAGATCAAATATTTTCCTTTTACTGTTAGGTCTCGTAGCTCATACGCAATGTCATTTTGAACATGATATTTACCTTTCTTTAAAAGTATCTACGTAGCTAATATCTTATGGATGGTATTGTTTTACTGCTATTTCTTTTTCTGGATCATATACGTTTACATTAGATGTTGTTTTACCAGTTTCAATAAAAGTTGTATATTTGATCTAGATGTCTTTATATAAATAATATATGGAAAGACGTTGCCAGTATTTGGAAGTTCGAGTCCAAATATATGTGTGGGTACTTGTGTAGAAGTAGAAGACATGTGTTACATTTTCAAATGTTTGTTGTCAGAGGGTGGACTTCCATACGTATACATACTGAGATTTAGTAGAATGATGACATTTGGAAGTAACAACCACTCTTCTTGCTTGTTTTTCAAATGAGTTCTCTTTTATTTTATAGAGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAAC-GGAGATGATT-TACTA-TCAGCCCTGGCTACCTTGGGATTTGA</genome_strand>
        <mrna_strand>CTGCCGTTGGATCTATGTGTATAGC-G-CAG--A--AAAGCTCAGCATCCATTTTCCGCCAAATTCCTTTCTCAAGCAAAAACTAACAAAATATTCTCTTGGATCAACCTCTACCTACGATCATCCATAAAGTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAAAAGGCATTGCCTGCTAATGGAAAGATCGCAAAGGATTCTAAGGACACTGTTCAGGAATGTGTATCTGAGTTCATCAGTTTTATTACTAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGGAGATGATTATACTATTCAGCCCTGGCTACCTTGGGATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261046" ref_strand="+" ref_description="SGN-E261046 [cLEG-55-B6]">
      <seq>tccaatggaaataatggtattgaatacaaatgtaacaagatcaatgcagtgcaacattgaatggaatggtgatgttggatttgaaatgttagaaggggtatacaagcatactgtgaacttgggtcaacaaaaatgtagttgaagatcatgggaattaaaaggtatcccatgtgcacatggtatagcagcaatgaactacttgaacatggatgcatcacaagcaatatctagttcgtatagaaaagacacaaatatgaagacatattctcatttcattcaaccagtcccaaacatggaaatgtggcctgaaagtagaaacccaatggttaaaccacctaaggcaagacaaatgcctggtaggtcaccaaagaatagaagaagagaaattggtgaagtgagaaaagctggaaagttgccaagaatggggacactaatgacatattcactttgcaaaggaccaaatcataacaagagaaattgtccaaaaaatcctaaacctatgtctacaccaacacccactcaagagtccaccactggaaaaaaagtggtagaggttattatgaaagaacaagcactagtaagacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="57088" stop="55958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56788" g_stop="56263" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56262" i_stop="56175" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56174" g_stop="56112" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="588" r_length="62" r_score="0.810"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E261046" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56788" e_stop="56263"/>
          <exon e_start="56174" e_stop="56112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATGACAATGATGGTATCCAATACACATGTAACAAGATGAATGCATTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAGTGTTAGAAGGGGTATACAAGCATACTGTGAATTTGGGTCAAGAAAAATGTAGTTGCAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAGCAATGAATTGCTTGAACATGGATGCATCATAAGCAATATCTAGTTGGTATAGAAAAGACACATATATGAAGACATATTCTCATTTCATTCAACCAGTCCCAAACATGGAAATGTGGCCTGAAAGCAAAAACCCAATGGTTAAACCACCTGAGGCAAGACAAATGCCTGGTAGGTCACCAAAGAACAGAAAAAGAGAAATTGGTGAAGTGAGAAAATCTGGAAAGTTGCCAAGAATGGGGACAGTAATGACATGTTCAATTTGCAAAGGACCAAATCATAACAAGATAAATTGTCCAAAAAATCCTAAACCTAAGTCTACACCAACACCCACTCAAGAGGTACATTTATATTGATTTGCTTTTATAAATTATGTTAGATTACTTATTTATTTAATCTCTTGTTGTGTTCTTTTTCCACTCATATTAGTCCACCACTGAAAAAAAGAGGGATAAAGATCACTATGAAAGAGTAAGCACCAGTAAGACTGGT</genome_strand>
        <mrna_strand>TCCAATGGAAATAATGGTATTGAATACAAATGTAACAAGATCAATGCAGTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAATGTTAGAAGGGGTATACAAGCATACTGTGAACTTGGGTCAACAAAAATGTAGTTGAAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAGCAATGAACTACTTGAACATGGATGCATCACAAGCAATATCTAGTTCGTATAGAAAAGACACAAATATGAAGACATATTCTCATTTCATTCAACCAGTCCCAAACATGGAAATGTGGCCTGAAAGTAGAAACCCAATGGTTAAACCACCTAAGGCAAGACAAATGCCTGGTAGGTCACCAAAGAATAGAAGAAGAGAAATTGGTGAAGTGAGAAAAGCTGGAAAGTTGCCAAGAATGGGGACACTAATGACATATTCACTTTGCAAAGGACCAAATCATAACAAGAGAAATTGTCCAAAAAATCCTAAACCTATGTCTACACCAACACCCACTCAAGAG........................................................................................TCCACCACTGGAAAAAA-AGTGGTAGAGGTTATTATGAAAGAACAAGCACTAGTAAGACAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553603" ref_strand="-" ref_description="SGN-E553603 [cTSC-1-K12]">
      <seq>tgtcagtggacatgttgatagtttggaggaacttgaggaaaaattttctacagcttttgatgtttatgtccatgttggttcctatgttcctccgctctttggtattcacgaaaatgcagcacatttggcagttgtaggtcgtggtagacgcgttgcaaatgccaaatactcagattgggttaggtaggcaaaggaaacaattggagaagctgaggccaccttctgtcaacgagctcctgttgtcaaacaatggcgatcagatcttagagggttgtttgactaatttttttgttgtttgccacaaggatgttaatggtgataatcacaagtctacagtttcaattgaattgcagactgcccctataagagatggtgtccttccaggcgttgtacgccaagtaattcttgacatatgctcaagaaacaaaatcccagtcagagaaattgcacctgcatggtcagagcgtgaaacgtggtcagaagcattcattacaagtagcttgaggctattgcagcatgtggaagttattcaagctcctagttcgtggggatcacttgatacacaaacttggactgacgtatcttgggaggagaagcgatttgagaatgctcctggacggatcactgcattcatccagaaggaggtcatggaaatggcaagcacggaagggtatccagtttctctatttaatgaccggtagatcttcccctcatataatatgtgctaattgtggtacgattggaaaggtcgtatcttaaaaacacaatgttttagcctgcgatatcttcccttcacacaaccctgttacatttattctggtgtacaattgactttatgttgaatcatttgattataaggagaaccgtaattaactcaaacaaaggtgaatagttcaataacagttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="75384" stop="69929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75084" g_stop="74902" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74901" i_stop="74590" i_length="312">
            <donor d_prob="0.039" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74589" g_stop="74468" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="305" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74467" i_stop="72734" i_length="1734">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72733" g_stop="72630" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="409" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72629" i_stop="71892" i_length="738">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71891" g_stop="71806" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="495" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71805" i_stop="71403" i_length="403">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71402" g_stop="71293" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="605" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71292" i_stop="71198" i_length="95">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71197" g_stop="71165" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="638" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71164" i_stop="70498" i_length="667">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70497" g_stop="70229" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="907" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E553603" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553603" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75084" e_stop="74902"/>
          <exon e_start="74589" e_stop="74468"/>
          <exon e_start="72733" e_stop="72630"/>
          <exon e_start="71891" e_stop="71806"/>
          <exon e_start="71402" e_stop="71293"/>
          <exon e_start="71197" e_stop="71165"/>
          <exon e_start="70497" e_stop="70229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAGTGGACATGTTGATAGTTTGGAGGAACTTGAGGAAAAGTTTTCTACAGCTTTTGATGTTTATGTCCATGTTGGTTCCTATGTTCCTCCGCTCTTTGGTATTCACGAAAATGCAGCACATTTGGCAGTTGTAGGTCGTGGTAGACGCGTTGCAAATGCCAAATACTCAGATTGGGTTAGGTAATTGTGCATGAACAGCTGGTTGCTTTCCTTTTAACCGTGATGTACTCAGTTTCCCGTTGATACTAATGAATGGTGATTTCGTTTGACGAGAAGGAGTTGCTCCGATGGTAAGCACCGCTCACTTCCAACCCTATGGTTGTGAGTTTGAGTCACCAAGGGAGAAAAAAGGGTGGGAACTCCTTTAGAGGGGGTAAAAAGGAGAAAAAGATGGTGATTTTGCTGTAGTATCTGATTTGAAGATATAGGGAAGAGATGAACTTTGTTGACATAATCTTTTTTGGTAATGGAAATTTGTTGTTTTCGTTATAGGTAGGCAAAGGAAACAATTGGAGAAGCTGAGGCCACCTTCTGTCAACGAGCTCCTGTTGTCAAACAATGGCGATCAGATCTTAGAGGGTTGTTTGACTAATTTTTTTGTTGTTTGCCACAAGGTAAGTGTCGTTAGAAAACTGTTATTAGGTCGACCTAGTCCTATTTTGTTAAAGTTTTGTGTTGCACTAAGAAAAGTTGGAATTTTTTTATTCTGTATAATCTTTTATCATGGTTAGATTTCAGATGACCAAAACCATTTCTGTTCAATTGATTTTGTTAATAACAACTGGCACTGAGATCTTATTTGATCTTGTAAAAGGTGTACCAATTTATTAGTTGATTGATGGTTTTTCTGGGAAGTTGAGTTTCATCAGCTTAAGAATGTAAAGCCGTAGTTGTTTAATTAGAGATTTCATTTGTTGAAGGGAACAATTGGTCTTTTTAAGACAGCCATTGTTTTTGTTGGTGGAGAATTGTAAAATTGAATTTTACACTAGATTTAGAGTACTCACTGTTGTAATTATACAACCTGACTTTGTGGCATCTTTGAGCCATACATAAATAATTCATCAGTGAATTTAGTGCTTAGATTGAAACCTTTCTATGAGACTTAAGATCTATAATAATGGGCTTGTCTTCTAGTTGTACAGGATGAACATAGCTTGACAAATTCTAATTGTCAATTACAGGAAGGTTATTGATTGTATATTTAAATTTAGTTCAGATAAGCGCCATCTTGTTGCTAGTCTTCTAACAATAATGAAAGTTCTTTTTGATAAAGTAACAATTAATAGAACTTACATTGTACTGATCAAAAAGTTGTAAGCTTTACTTCTGGGCACACTGGAATGACTTGGACTAGCCGAACTACTCCTGAATTTTAAGGTTATTGGAGCTATAGAAAAAAATCACGGGGCTATAAAAGTTTGAGTGAAGCTTGAAGAAAATATGGAATACAATTCCTGCATGCATTTAGTGGTCTATCTGGAAAGAAATCTGGGGTGCTTTTGAAGATGTACCAACTCCTTGCTGAAGGTCCAGACTAGTTATATACTTCTCCCGTTTATTTGGTGTAGGGAGTAATATGTACACGAGGCTGAATCACCACCGATTGATTTGTAGGTTGACTTAGAAGGAAGTAGCTATACTTTTGCTTTTTGGATGTACATGATACAACACCATCTTAGTGCTGATTTCAAAAAATAAGGGAAGAAGCTCTTTTACAGCTCAAGGGAAAAAAGTGTTAAGCTTTACTTTAAAATGGACACAGCATCTGCGCTGAAGGCATATTAACTTCTATCTAGCAGGAGTTACAGCAATTACTAGCCAAGCTATCCCCAAGTAGTGCATTAGTATTATTTTGCTGAGGATAAGGTAAATCCTTAGTGACGACATTCCATCTTCTCCTTCACAAAGTGAATGCAGGATGTTCTTAACTTGATGTGAAAAGCTTATGTAAAAAAAAACATATTGTCCAAGGAGCATTTATGTGTTATTTAGAAAAATACTATGGGGGTGGAATGGAGTGGGAGTTTGGGGATGGCATAGGATAGGATGGTCAAGGGGAGGGGTGGGGGTAGGGGACTGCTTGGAGGTGGGAGGAGACAAACTTCACCAATGAAACTTTTTTTCCCTACTTGCATTAGGGAAATTATTTTCTTCATTTTTAAGGAACTTGTTTTTACAGAGAAAAATTTCGATCGACCAAACATGAGCAAATTGGAAATTATCTCTGCATACCAAACACACCCTTAAGTTTTATCATTTTGCTTTAACTTTATGTGAATAGAGTATAACTTATACAAAGTCCATCATGTTTTATCTTACCGAAATTACTAAAATTTTTGCTGCAGGATGTTAATGGTGATAATCACAAGTCTACAGTTTCAATTGAATTGCAGACTGCCCCTATAAGAGATGGTGTCCTTCCAGGCGTTGTACGCCAAGTAATTCTTGAGTGCGTTCCTTCTCTGGCCTTCGAAACTTGACATATTTTAAGTTAGAACTTAAGGTTACTGTATGGAACTTCATCTCGCATTTTGAGCAACTTATTCATCTGTAGAATGTAATAAATGCTGGTCTACTTGGAAGGGGTTACTGTTGTGTTGACTTGGTTATGCCTAATGTTTTATATGGTTGGCACAGATTCATTCTAGATCATTCTCTGTTGCCCTAATCCTATGTGTTCTGCACATATTACATACTGTACCATAAAGAATTTCCTTTACTGGTAGGGAGTCTTATTGAAGCAGATCTTGTACAGAAATCTCTTTATATAATAATTGGAGGTAAGTTAATTAATAATAACTCATTAATTAGTAATTTCTTTTAGCAGTACATCTTTGGCATTGAGAACTTTTATTTGCACGCCATCATATATGTTCCCAAAGGAGTGCTATATAAAATGGTCTGGACTCTGGTATTTGTCCTTGTGCGTGATGCCCATATTTGAACCGCAAGGACAATATGAAGCTATTGAGGCTCTGTGGTTTATTGAAGAAATGAGAAATATGGACTTTAGAATTGAAAGGATTAAATCATGTTGTTTCTATTAGGTTTAAGTGATCTGTCAAGAAAAAAACATTAGTGACCTGTCTGCTAGGAGCTGCTTTCTTTCTTAAAAAAAGGTTATTCCAGATCTCATTAAAATTGTACTTTGTTAAATAATGACCATGATAATCATGTGTTTGTCCAGCATATGCTCAAGAAACAAAATCCCAGTCAGAGAAATTGCACCTGCATGGTCAGAGCGTGAAACGTGGTCAGAAGCATTCATTACAAGTATGTGTCTCAGTCATAAGCTCAAATAATTATCATTTCTTCAGCATTATATACTCAAAGCTTACTTTATTCTACGCTGGGTGCTCCAAAGCTATTTCCCTTTACCTGGTCAAGTGGAAACTGAATTTGTAGTATACATATTTGAGCTGTGGTCCTAATACTTAAACCTATTGCCCATCAGTTTTCCAGTTCAACTTCATGCTTGTTATGTGCAATATAAGGTTGTACTCAGTTTAAAAGTGAAAGATAAGAGTGAAAATTGTGCCCAACATTCCATTATGTATATTGCTGACAGTTTAGAAGTGAAGGGTGGTAGAAGCTTGTTTATCATGAATTTGTGTTCCTATATACAGTGGAGGATTTATTCTTACTGTTAGCATACTTATTTGAACTATTATTACAGGTAGCTTGAGGCTATTGCAGCATGTGGAAGTTATTCAAGCTCCTAGTTCGTGGGGATCACTTGATACACAAACTTGGACTGACGTATCTTGGGAGGAGAAGCGATTTGAGGTATGACAAATCCATGCACTAACAACTTGATAAATAAAAGAAGTTTTGAAGCTGCTCGTTGAATAATCCCCTTACTGATGTTTGTGAAATTTCAGAATGCTCCTGGACGGATCACTGCATTCATCCAGGTAATAAAAGAGATATTTTTCTTAATCTTTATGTCATTTAATAGAGAGATTACTTGTTTGATTCTGTACCATTTTTAACGTAGATTTGTCCACCCTTACATTACTAATCATTACTTAAGTTATAAGATTGAGTATTCATCCTGCTTCCCCAACCAGATACACAAACCAAGTGCATAATCTTGTACACTGAATAGTCTCTTAACATACTGAAAAGGGTATACACCAATGTGATCAGAAGCAGTATACATTTATGTCGAGTCTCCATTTTGAGAAATCCTCTTATGGCGTGCTTGTAGAAGCATTAAACAAAATAATTTGATTGTAAAAGAAGACGCTATTACCTGAATCAGATAGGGCTGTAAATATTCACCCGGGCAGAGTATACTATCTCTTTCACTCTCATTTCCCCGTCTTGAGCTCTTGCTGTCTGGGTACAAGCAGAAGTTACCTATGAAAATTGACATGGCAAAACCCCTCAAGAGTATGATGCCCCCGGCCTTCCTTTTAGTTGTTCTCTTGGGTACTCTTTCCTTATATAGACAGTAATCATTGGTCTACTTGCACCATGTTTGTCACTTAAGCACAAGTAGTGGAACAATTACAAAATTGTGAAGCCTCTTGTATTGCACAAGTAGCGAACAAAGACTCATTGTTGTTTTTTCTGCAGAAGGAGGTCATGGAAATGGCAAGCACGGAAGGGTATCCAGTTTCTCTATTTAATGACCGGTAGATCTTCCCCTCATATAATATGTGCTAATTGTGGTACGATTGGAAAGGTCGTATCTTAAAAACACGATGTTTTAGCCTGCGATATCTTCCCTTCACACAACCCTGTTACATTTATTCTGGTGTACAATTGACTTTATGTTGAATCATTTGATTATAAGGAGAACCGTAATTAACTCAAACAAAGGTGAATAGTTCAATAACAGTTGT</genome_strand>
        <mrna_strand>TGTCAGTGGACATGTTGATAGTTTGGAGGAACTTGAGGAAAAATTTTCTACAGCTTTTGATGTTTATGTCCATGTTGGTTCCTATGTTCCTCCGCTCTTTGGTATTCACGAAAATGCAGCACATTTGGCAGTTGTAGGTCGTGGTAGACGCGTTGCAAATGCCAAATACTCAGATTGGGTTAG........................................................................................................................................................................................................................................................................................................................GTAGGCAAAGGAAACAATTGGAGAAGCTGAGGCCACCTTCTGTCAACGAGCTCCTGTTGTCAAACAATGGCGATCAGATCTTAGAGGGTTGTTTGACTAATTTTTTTGTTGTTTGCCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTAATGGTGATAATCACAAGTCTACAGTTTCAATTGAATTGCAGACTGCCCCTATAAGAGATGGTGTCCTTCCAGGCGTTGTACGCCAAGTAATTCTTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGCTCAAGAAACAAAATCCCAGTCAGAGAAATTGCACCTGCATGGTCAGAGCGTGAAACGTGGTCAGAAGCATTCATTACAA...................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTTGAGGCTATTGCAGCATGTGGAAGTTATTCAAGCTCCTAGTTCGTGGGGATCACTTGATACACAAACTTGGACTGACGTATCTTGGGAGGAGAAGCGATTTGAG...............................................................................................AATGCTCCTGGACGGATCACTGCATTCATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGTCATGGAAATGGCAAGCACGGAAGGGTATCCAGTTTCTCTATTTAATGACCGGTAGATCTTCCCCTCATATAATATGTGCTAATTGTGGTACGATTGGAAAGGTCGTATCTTAAAAACACAATGTTTTAGCCTGCGATATCTTCCCTTCACACAACCCTGTTACATTTATTCTGGTGTACAATTGACTTTATGTTGAATCATTTGATTATAAGGAGAACCGTAATTAACTCAAACAAAGGTGAATAGTTCAATAACAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572777" ref_strand="+" ref_description="SGN-E572777 [31984]">
      <seq>cacaagtctagccaaagagacaatgaatctacagtttcaattgaattgcagactgcccctataagagatggtgtccttccaggcgttgtacgccaagtaattcttgagtgcgttccttctctagctttcggaacttgacatatttaaagttagaacttaaggttactgtttggaactttgtctcgcaatttgcagcaacttattcatctgtagaatgtaataaatgctggtcaacttggaaggggttactgttgtgttgacttggttatgcctaatgtttggtatggttggcacagattcattctagaacattctttgttcccctaatcctatgtattctgcacatattacatactgtaccataaagaatttcctttactggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="-" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="73012" stop="72054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72709" g_stop="72354" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="384" r_length="357" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="-" ref_id="SGN-E572777" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72709" e_stop="72354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACAGTTTCAATTGAATTGCAGACTGCCCCTATAAGAGATGGTGTCCTTCCAGGCGTTGTACGCCAAGTAATTCTTGAGTGCGTTCCTTCTCTGGCCTTCGAAACTTGACATATTTTAAGTTAGAACTTAAGGTTACTGTATGGAACTTCATCTCGCATTTTG-AGCAACTTATTCATCTGTAGAATGTAATAAATGCTGGTCTACTTGGAAGGGGTTACTGTTGTGTTGACTTGGTTATGCCTAATGTTTTATATGGTTGGCACAGATTCATTCTAGATCATTCTCTGTTGCCCTAATCCTATGTGTTCTGCACATATTACATACTGTACCATAAAGAATTTCCTTTACTGGTA</genome_strand>
        <mrna_strand>TCTACAGTTTCAATTGAATTGCAGACTGCCCCTATAAGAGATGGTGTCCTTCCAGGCGTTGTACGCCAAGTAATTCTTGAGTGCGTTCCTTCTCTAGCTTTCGGAACTTGACATATTTAAAGTTAGAACTTAAGGTTACTGTTTGGAACTTTGTCTCGCAATTTGCAGCAACTTATTCATCTGTAGAATGTAATAAATGCTGGTCAACTTGGAAGGGGTTACTGTTGTGTTGACTTGGTTATGCCTAATGTTTGGTATGGTTGGCACAGATTCATTCTAGAACATTCTTTGTTCCCCTAATCCTATGTATTCTGCACATATTACATACTGTACCATAAAGAATTTCCTTTACTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548274" ref_strand="+" ref_description="SGN-E548274 [TUS-59-L2]">
      <seq>tcgagatgttgtaagagttagtacactttcaaaggactggcaatataatttctagagaattccacatgtgaaattttatcaaacagtgtggaaaacacccgaggacttgacatcccctgccattggatttattccgattcttgatagtttgctcaggtttcatagaggaataatattgaaggtcaccctcaatattattagtctaataatgtgtcctaatgttgatcgtctaattttttccctcgacattgatcacattcaacattttgtccttgaaattccatttacttatcctccatttaggttgcccaacttcttttttattgttcagcattgaggcatttctatctcatgggatgtgaaatacaactttcatgtttctttaagggatttaataagttgattaggctaatattgaaatctgtatcgttatcttctgatacgtttgaaaatttgatctctaattgcccgttgcttgaggatttggtgctaaaagacacagacaattcgtacctcattattagtaattctcttaagctaaggtcatttgtctttcgtggcgatatacaattgatacatcttgaaaatgtccctgttctttccaatgttctgtatgcgcctagagaattagttctagaggacgaagatgattttgtcaatattttttcgtctattgttgctctccagtgtttcagcatggatctttttgagttcgataatggaacaactaaagttataccaacaaggcttccatcagttcttaactgtctgaaatgcctattcatgtcttggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="+" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="93609" stop="95098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93907" g_stop="94617" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94618" i_stop="94713" i_length="96">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94714" g_stop="94798" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="796" r_length="85" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="+" ref_id="SGN-E548274" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93907" e_stop="94617"/>
          <exon e_start="94714" e_stop="94798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATGTTGTTAGAGTTAGTACACTTTCGAAGGACTGGCAATATATTTGCTGGAGAATTCCACATATGAAGTTTGATCAAACAGTGTGGAAAATACCCGAGGACTTGACATCCCCTACCATTGGATTTATTCCTATTCTTGATTGTTTCCTCAGGTTTCATAGAGGAATAATATTGAACGTCACCCTCAATATTATTAATCTAATAGTGTGTCCTAATGTTGATCGTTTGATTTTTTCCCTCAACACTGATCACATTCAACATTTTGTCCTTAAACTTCCATTTACTTATCCTCCTCACAAGTTGCCAAACTTTTTTTTTGATTGTTCAGCATTAAGGCATTTGTATCTCAAGGAATGTGAAATACAACTTCCTTGTTTCTTTAAGGGATTTAATAAGTTGATTAGGGTAATATTGAAATCTGTCACGTTATCTTTTGATATGTTTGAAAGTTTGATCTCTAATTGCCCGTTGTTTGAGGATTTGGTGCTAAAAGACATAGTTAATCCGTACCTCATGAGTATTAATGCTCCTAAGCTAAGGTCATTTGTCTTTCGTGGCGCTATACAATTAATACATCTTGAAAATGTCCCTGTTCTTTCCAATGTTCTGTATGCACCTAGAGAATTAGTTTTAGAGGACGAAGATGATTTTGTCAAT-TTTTTTCGTCTATTCCTGCTCTCGAGTGCTTCAGCTGGGATCTTTTTGAGGTAATAATTCTTCATTTTACTTAATGGTAATGCATTTTCATTTGTACTTTTTTTGTGGAATTTCTGTCATCCTTATTTTTGTCATTTTATTCATAGGTCGATAATGGATCAACTAAAGTTATACCAACAAGGCTTCCATCAGTTCTTAACTGTCAGAAACGCCTGTTCATGTCTTGGATTA</genome_strand>
        <mrna_strand>TCGAGATGTTGTAAGAGTTAGTACACTTTCAAAGGACTGGCAATATAATTTCTAGAGAATTCCACATGTGAAATTTTATCAAACAGTGTGGAAAACACCCGAGGACTTGACATCCCCTGCCATTGGATTTATTCCGATTCTTGATAGTTTGCTCAGGTTTCATAGAGGAATAATATTGAAGGTCACCCTCAATATTATTAGTCTAATAATGTGTCCTAATGTTGATCGTCTAATTTTTTCCCTCGACATTGATCACATTCAACATTTTGTCCTTGAAATTCCATTTACTTATCCTCCATTTAGGTTGCCCAACTTCTTTTTT-ATTGTTCAGCATTGAGGCATTTCTATCTCATGGGATGTGAAATACAACTTTCATGTTTCTTTAAGGGATTTAATAAGTTGATTAGGCTAATATTGAAATCTGTATCGTTATCTTCTGATACGTTTGAAAATTTGATCTCTAATTGCCCGTTGCTTGAGGATTTGGTGCTAAAAGACACAGACAATTCGTACCTCATTATTAGTAATTCTCTTAAGCTAAGGTCATTTGTCTTTCGTGGCGATATACAATTGATACATCTTGAAAATGTCCCTGTTCTTTCCAATGTTCTGTATGCGCCTAGAGAATTAGTTCTAGAGGACGAAGATGATTTTGTCAATATTTTTTCGTCTATTGTTGCTCTCCAGTGTTTCAGCATGGATCTTTTTGAG................................................................................................TTCGATAATGGAACAACTAAAGTTATACCAACAAGGCTTCCATCAGTTCTTAACTGTCTGAAATGCCTATTCATGTCTTGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284693" ref_strand="+" ref_description="SGN-E284693 [cLES-3-F5]">
      <seq>cgagatgttgtaagagttagtacactttcaaaggactggcaatataatttctagagaattccacatgtgaaattttatcaaacagtgtggaaaacacccgaggacttgacatcccctgccattggatttattccgattcttgatagtttgctcaggtttcatagaggaataatattgaaggtcaccctcaatattattagtctaataatgtgtcctaatgttgatcgtctaattttttccctcgacattgatcacattcaacattttgtccttgaaattccatttacttatcctccatttaggttgcccaacttcttttttattgttcagcattgaggcatttctatctcatgggatgtgaaatacaactttcatgtttctttaagggatttaataagttgattaggctaatattgaaatctgtatcgttatcttctgatccgtttgaaaatttgatctctaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="+" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="93609" stop="94675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93908" g_stop="94375" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="+" ref_id="SGN-E284693" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93908" e_stop="94375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATGTTGTTAGAGTTAGTACACTTTCGAAGGACTGGCAATATATTTGCTGGAGAATTCCACATATGAAGTTTGATCAAACAGTGTGGAAAATACCCGAGGACTTGACATCCCCTACCATTGGATTTATTCCTATTCTTGATTGTTTCCTCAGGTTTCATAGAGGAATAATATTGAACGTCACCCTCAATATTATTAATCTAATAGTGTGTCCTAATGTTGATCGTTTGATTTTTTCCCTCAACACTGATCACATTCAACATTTTGTCCTTAAACTTCCATTTACTTATCCTCCTCACAAGTTGCCAAACTTTTTTTTTGATTGTTCAGCATTAAGGCATTTGTATCTCAAGGAATGTGAAATACAACTTCCTTGTTTCTTTAAGGGATTTAATAAGTTGATTAGGGTAATATTGAAATCTGTCACGTTATCTTTTGATATGTTTGAAAGTTTGATCTCTAATTGC</genome_strand>
        <mrna_strand>CGAGATGTTGTAAGAGTTAGTACACTTTCAAAGGACTGGCAATATAATTTCTAGAGAATTCCACATGTGAAATTTTATCAAACAGTGTGGAAAACACCCGAGGACTTGACATCCCCTGCCATTGGATTTATTCCGATTCTTGATAGTTTGCTCAGGTTTCATAGAGGAATAATATTGAAGGTCACCCTCAATATTATTAGTCTAATAATGTGTCCTAATGTTGATCGTCTAATTTTTTCCCTCGACATTGATCACATTCAACATTTTGTCCTTGAAATTCCATTTACTTATCCTCCATTTAGGTTGCCCAACTTCTTTTTT-ATTGTTCAGCATTGAGGCATTTCTATCTCATGGGATGTGAAATACAACTTTCATGTTTCTTTAAGGGATTTAATAAGTTGATTAGGCTAATATTGAAATCTGTATCGTTATCTTCTGATCCGTTTGAAAATTTGATCTCTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539786" ref_strand="+" ref_description="SGN-E539786 [TUS-59-L16](-)">
      <seq>ctagagaattagtctagaggacgaagatgattttgtcaatattttttcgtctattgttgctctccagtgtttcagcatggatctttttgagttcgataatggaacaactaaagttataccaacaaggcttccatcagttcttaactgtctgaaatgcctattcatgtcttggattactcttggagagttttttaagctttcgtttgctctttgcattataaagagctctccaaatttggaagaaattgaaattaaggaatttttctttagtgatggagattatttcgaatctgtgtcccaggaggttgttgatgagattcttccaagcttttcggatatcacatttaatcatctaaggacagttaagttttatgatataccattagaagaggttgaaatacagcttatcaaggttttattggcaaagcctccaacattggtgaaaatggtaatcaagcctcgtcaaatggaaactatcaaatctctcaacttactcgcggagataacaaagttttaacaggcaccatctaaagcagaagttgtgtatcttttttattagtatcgttatcacaatccttcctaatctttggttaaaatatttttgaagtacaaacagaaacgagacatttggttgatggagtaacaagactgtgttttgccttcgctttaaggtactataaagattttatctgcttggaagcatagaattgtatatgttttgtatactctgtttgggaacagagatggtttttacatttcatggatgctcttaaaatgatatatgatttgagtctttggttgtttattgcaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="+" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="94227" stop="105792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94527" g_stop="94617" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94618" i_stop="94713" i_length="96">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94714" g_stop="94878" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="256" r_length="165" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94879" i_stop="94970" i_length="92">
            <donor d_prob="0.912" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94971" g_stop="95385" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="671" r_length="415" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95386" i_stop="105353" i_length="9968">
            <donor d_prob="0.860" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105354" g_stop="105492" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="812" r_length="141" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="813" polyA_stop="828"/>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="+" ref_id="SGN-E539786" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94527" e_stop="94617"/>
          <exon e_start="94714" e_stop="94878"/>
          <exon e_start="94971" e_stop="95385"/>
          <exon e_start="105354" e_stop="105492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGAATTAGTTTTAGAGGACGAAGATGATTTTGTCAAT-TTTTTTCGTCTATTCCTGCTCTCGAGTGCTTCAGCTGGGATCTTTTTGAGGTAATAATTCTTCATTTTACTTAATGGTAATGCATTTTCATTTGTACTTTTTTTGTGGAATTTCTGTCATCCTTATTTTTGTCATTTTATTCATAGGTCGATAATGGATCAACTAAAGTTATACCAACAAGGCTTCCATCAGTTCTTAACTGTCAGAAACGCCTGTTCATGTCTTGGATTACTCTTGGAGAGTTTTTTGAGCTTTCGTTTGCTCTTTGCATTATAAAGATCTCTCCAAATTAGGAAGAAAATGAAATTAAGGTTGTCACTAATGTTTATTTTTCTCTCTAGCTTTTCCATGTTTTTATATTTGTATGTAATGACTTGATGGTTTTCTTCTTCATTTTTCTTAGGAATGTATCCTTAGTGATGGAGATTATTTCGAATCTGTGCCCCAGGAGGTTGTTGATGAGATTCTTGCGAGCTTTTTGGATATCACATTTAATCATCTGAGGACAGTTAAGCTTTATGATATACCATTAGAAGAGGTTGAAATGCAGCTTATCAAGGTTTTATTAGAAAAGTCTCCAGCACTGGCGAAAATGGTAATCAAGCCTCGTCAAATGGAAACTAACAAATCTCTCAACGTACTTGCGGAGATAACAAAGTTTCAACGGGCATCATCTAAAGCAGAAGTTGTGTATCTTTTTGATTATTATCGTTATCACAATTCTTCTTAATATTTGGCTAAAATATTTTGGTAGTACAAACAGAAACGAGACGTTTGGTTGATGGAGTAGCAAGGCTGTGTTTTGCCTTTGCTTTAAGGTACTATAAAAATTTTATCTGCTTGGAAACATAGAATTGTGAACCTGGATAAATGTTTTGAATACTCTATTTGGGAACAAAGATGGTTTTACATTTCATGCTTGTTATTGATTTAAGACTTTGGTTGTTTATTTTGAAATTATGTTGTTGTTGTTCATATTGTATTCCAAACATACTTAGAACAAAACTTTGAACATCTTTGTAAGAAAACAAAGTTTAAGAACATTTTCACAACTAGAAAATTAAAACTAGTAGAGAAAATAGAATCAGAAACAGATTTCAAAAAAAAATATACGAAATATTTTTCTTAAAGAAGAATTGTTGTTAATACGTGTCTAAAGAATCTTACTGATTCCAACAAACTTTGCAGAAACACGAAGTTACCAAGTTTAATGAACCAGTGAAGAACAAAAGAATAGAAGAACTGAAATTAATTCGCAAATCTAATGTTTGTAAAACACATATCAGAATCTGGAAAATTTTTAATAGGAAAAATATCAAGTCCACTTAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATGACCTCCCAGGGTAAAATGATCTCAATCACCAGAGTATAGATACCAAAAACTCTGGTGTCAGCGAACCACTCAATGGCAGTAAAGTACACTTAGAATACTAGATTTAGTAGTTGAAGAAGAAATCCATAAATTCTATTTATAATGAGAGGAAATCCCTCAATTTATAGAAAACAAAGGATAGTGCGAAAAGGTTCTTATTGTGCCTTACCGGAAAGGTCACAAACCTTTGGAAAAGTACAATCTTTCAGAAAGGTCGTCACCTTTCATAAAAGTAACAACTTTTCATAAAAGTCACAACTTTTCATAAAAGTCGCAACTTTTCATAAAAGTCGCAACTTTTCATAAAAGTCACAACTTTTCATAAAAGTCGCAACATTTCATAAAAGTCACAACTCTTCATAAAAGTCGCAATCTTCATTTTCCATTCACACCTTTTTTAAAATCCAACAATCCCCCGCATGAATGGAGAATGACTCAAAGACAAAGAAACGGACAAGTATGTGTACTTTACAAGCAAGAATTAATTGCATCTGGATAAGTAGGTTTCCCCTTGGACTTTCCGTAGTGAACATATGTCGGATATACTCGGTCAATCGGTAGATGCGATATCTTTGAACCGTCGAACTTTGGTGTATACCTGACAACCATATGTCACACAATTAACCCTTTACCGTTTATGGTTATTACGGTTGTGTTCGTTTTAGCCATGAACACCTCCTGGTTTCAGGAGTGTATAGAGAGATGGGCTTTTTACAATCACTTCTTTGAAGCGGCTTACACTTCACACTCACATAGGTGATTCCTAACCGTGTTATCGCGTAGATACACTATTTGGTCAACTCTGCCAAACTTAGCAAATCATTAAAACCATTAAGCTTTATTAACTCATTAACAAGCCTTAATGTTGTATACTCGTCCCTGAGCATTGTCTTCATCATGAGAATGGATTGAGTTTGTTGATAATGCCGAACCGTCATTCACAACTTTGTTTTTCTCCTCGAATCTAGCTCTTAAGATCTCCAGTCTGCTAGATAGAGTTACAGCCATGATGACTTGTCCTAAGCCGTAAATTCATTCCCTTAGATGATCTTTTAACTTCCTCTCTAGTTAGGCCTTTTTGTAAGTGGATCCGACACATTATCCTTTGACTTAACATAGTCAATTCTGATAATTCCACTAGAGAGTAGTTTTCTAACGATATCATGTCTATGTCGTATATGACGAGACTTTCCGTTGTACGTCATGCTCCATGCCCTACCTATTGCATCTTGACTGTGAAAGTGTATGCATACTAATGCCAATGGTTTCGGCAAAAATAGAATATCTATCAAGAAATTTCGGAGTCTTGCAACTTATTTACCGACCTTATCTAGAGCACCTAGCTCAAAGATCATTGTAGAGATAGCGATACATGTATCTTTTGAAATATTTCTAAGAGACTGCTCCTCTACCAATAGTAAATACATATCCACTCGTGAATTTTACTTCATTCGTCCGATGATTCATTTTGCATCACTATATCTTTCAATATTGTTGGATATTGTTATAATGCACGACATAGTTTTAAGTATTATTTTAAATACTCCAAAACTCTATTTATTGTCATCTAATGAATTTATTTGGGATCGCTTGTAAACCGACTCAGTTTAAAATAGCAGATGCTATATCTGATCGAACACACTATATGATATACAACATGCTTCCCAAAACTCTAGAACAATCCAATTGTGAGTACCTTTTGTTTTCACTCTTTTCAAATGCATAGATCACATTTATTGGAGATTTGACAATATTGGCATCCAAATATTTGAACTAGTTAAGTACCTTTTCAATGCAATGAGACCATGAAAATGCTAAACATTATGGATTTCTACGAATTCTTATATCTAAGATCGCATTAGCAACTCCAATAATTTCCATTCCACTTGCTTTGTAGCATACATTTAGTAGCATTTATGTTATTAGTGTCTCAATTGATGATCAACATATCACCAATATACAAACAAACAATGACATTATGATTTAATGTGAACACATTTATCACTTCCATCATTCTTCAATCCATTTGTCGACATGGTTTGATCAAATTATGTCATTGTTTGGGTGTATCCATAATGTAATTTAACAAGTTCACACACTTTCTTTTATTTATTAGGAACCACAAAACCCTCGGGTTGTTCCATGTAAATTTCTTTCTCCAATTCTACATTTAAGAAAGTTCTTTTCACATTCAATTGATGAATTTGGAGGTCATATACCACACTAATAATTTTTGCATCCGAATGGATATAATTCTAATTACTAACGAGTATATATATATTGACAAGATCAAAACCTTGCTTTTTTCTTCTCTAAAGCCTTTGACACAAAGTCTTGCTTTATATTTTTTGACAGTTCCATCAACTGTTATTTTCCTTCTAAAGATTCACTTTGAACCCAAAGATTTATTTTCTTGAAGAAAATCAATTAACTTTCAATATTGTTTATTGAAACCATCTTTCCAAAGATGAGTCTACAGAAGACACAGGAAATGTTACAAAATCATATTCAAAGGAAGTAAATGTCCTTTAACATTTACTAAGCCTCTGAATTTCTTTATTAAGTACATTATCCTTTTCATTTTCAAGGCCTTTTAGACCGTTTTCTAGACTCTCAAGTCTAATTTTACAGTCCACAGTGATAGTTCCTATTTTAATTCTTTTAGGAATAGGAACTTGGACTTTGACTAGATACTCACACACGTTGAAATACTTCAAGTTGGATTTCCTTTCTTTCCATTTCTCATATGGAAAAGATTGTATTCTAATCAAACAAAGTCACTTTCTTTCTAAAAAGACAACTTTTTGTTGTTCCCTTTTGCAATAAGGATAGTTCCTCCACACAAATTTTGTGTAAACCAGAACTTATAAATAATGCATCCATCATTTGTTTCAACGTTCGGTTTTTCATTAGATTGAGGTGAATATGACAATAGTTTGATGGATATTCCACTTTCCAAACATATTTCTGCACAATAAGATTTATACTCTCCATTCTTATCACTTCTTATATTTTTTCACACTGATTTTCAACTTCGATATTACATTGTCTAGACATTTCTATTGCTTCATCCATACCATTCAACAAATAGACATAAGCATTTATAATGCAATTCTCAATAAAAGTAACAAATACTTTTTCCCACCATGAGATGGTGTTAATTTCATATCACAAATGTCAGTGTAAATTAATTCTAAGGGTTTAGAATTCCTTTCAACAGATTTATAAGAATGTTCAACATAATTAGATTCCACAAAACTTGACATTTTTATTTATTGCACTCAAAGTTAGGCAAAACTCCTAAGTTGATTAATTTTCTTTACATGGTTTTGTAATTGACGTGCCCCAAGTGTTCATGTCACAAACATTGACTCAAGCAAGTAAGAACAAATAAAAAACATTGAGTTTGAAAAAGCTCTTCGTGAGGTAGCTTTTTCCTCACTAATATTTTGTTCCTATTTCTTACAATTTTGTGTGATACAAACATTGTTTAGATTGTCAAATGTCCTTTTCAGAAGGACATTTCCATAACTTTCAATATGATTGTTATAGTACTACCCATGAACAAAGTTTCATCGGGTTCAATAAAGACAATATAGTCCAAATGTTATTTTTACAAAAACATAACAAATGACTATTCAACAATATTCATGTCTATGCAAATACTTTTATTATAATAGACATATCTTTTCATGAAAAATCACAACATTTTAAGTGATTTTTCCCCATAAAAGAACACAATTATTTTGAACAAGTATATATAATAATTTGGATGTTTCATACTAGTCACACTATATACTAGTAATAGAGAAACTCAACAACCACAATACCAAATATACCCTAAGAATTTTGTGGGTATAACATAATACAAAAGTATCATTGAATTTCATATCTTTTGCTCCAAAGTTAAATTAGACACCAAGTCTGATCATAAGCAAATAACCCCCACATTTCAAATGTAATCTCAAAAATATTTTTCAAGTATTTTGAAAATAGTTTTTCCACATATTTTAATGTTGGAAACATTATTCTACGAAAGAATTATAGTGCTGCAATTCTCTTTGACAATGTATACACAATGTCAAAGTTCATTACATAAAGACACAAAATCACAAATTCTAAGTCACTGGTATTTTTTCTCTATCATAAATAGACATGCCACTTAGTATTTTAAATATTAACAATAAGGACAAAACAAAATTGTACAATTTATTTCTATGTTATATTGAAGTTAATAGAAAATCAAAATTACAACATTGACTTATTATGTGAAGTTTTCATATTCTTCAAACCAATTGCAGAGTCCAATTTATCCAGAGTATAAAACCACAAAAATTTTTAGTCTACAAAAATCAGAGACACTAACATTTCTCATGGAGTACAAAACTACAAAAGTCTTTTTTTTGTCCAAACAGAATAACACATATTCTTTATCACATAGAAATGTTTTTCTTATCAAATAGTCTTCCAACTATAACAATTTGACATACTATTTTATCAAACAAAAATATGCATCTCTCATTTTTGCAAACTAAAGAATTTTAAAAGCAACAATATCTGCGAAGTAAAATTCATTCCACAACATATGGTTTGCAAATCTTTTTCCAAAGATACACATAATAATAAAAAAATAAAAAATGATTACTCTTAGAAACTATTTTCCTCCTTAGATAATTTAATAAGAAGGTTTCCTGGTAATCTTTAAACGGAATACCATAAATTTTTTTGTTACATTCTCACTTCGACTTTGGTAAAACAAAGGAACGAATTATGGAGAAGTAATGCATTTATTTCTACTTCCATGATCAGATTCTCTCATTCAGTAGAATACAAAAAAATACTAACAACATAATAATTTCCTTAAGATTGTTGTTCATATTGTATTCCAAACATACTTAGAACAAAACTTTGAACATCTTTGTAAGAAAACAAAGTTTAAGAACATTTTCACAACTAGAAAATTAAAACTAGTAGAGAAACTAGAATCAGAAACAGATTTCAAAAAAAAATATACGAAATATTTTTCTTAAAGAAGAATTGTTGTTAATATGTGTCTAAGGAATCTTACTGATTCCAACAAACTTTGCAGAAACACGAAGTTACCAAGTTTAATGAACGAGTGAAGAATAAAAGAATAGAAGAACTGAAATTAATTCACAAACCTAATGTTTGTAAAACACATATCAGAATCTGGAAAATTTTTAATAGGAAAAAGATCAACTCCACTGAATTCACAATGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATGACCTCCCAGGGTAAAATGATCTCAATCACCAGAGTATAGATACCAAAAACTCCGGTGTCAGCGAATTACTCAACGGCAGTAAAGTACACTTAGAATACTAGATTTAGTAGTTGAAGAAGAAATCCATAAATTCTATTTAAAATGAGAGGAAATCCGTCAATTTATAGAAAACAAAGGATAGTGCGAAAAGGTTCTTATTGTGCCTTACCGGAAAGGTCACAAACCTTTGGAAAAGTCACAATCTTTCAGAAAGGTCGTCACCTTTCATAAAAGTAACAACTTTTCATAAAAGTCACAACTTTTCATAAAAGTCGCAATATTTCATAAAAGTCACAACTCTTCATAAAAGTCGCAACTCTTCATTTTTCATTCACACCTTTTTTAAAATCCAACAGTGTGTTGCAGAACTAAGAAAGATTTTGCATGACATTCTTGTTATTAATTCATCTCTAAAATAAGACATAGCTTTGGAAGTTGGAACTGTCACGGGCTAATTCAGGTAGAAAATGAAAAACACATGATGATTTACATATAAAACTCGCAAAAGGAAAAAGAAAATGAAACTTTAACTGTGTCTTAATTAGCTTTTCCTTAATTTTTTCTTCTACAATATATTCTCTCTATTTTAATATTAGTGATGCATCTTAAATAAGATATATTACATACTTTAACATGTAAGATGACCGTATGATATACAAAATATTTAAACGACAAAATGTATTTTACTTGGGAGTTAATATATATACTCTTAGAATCATTAATAAAAACGAAAAAAGAAGTTTTAGTTGTTAAATACGAAAGTAAATTTGCTCTTTATTTTAGATGGGGGCACAAAGGTCGATTTGATTTAATTTTTAATTAAAAAAACCTAAACTATTATTTCATTTTATTATTTTTTTGATTTTCTTATAATTGCATGATGATTGAAAAATAGATTAAATATATTTTCAAAATTTTCAAAAAACGATAAAATTCACATAGATAAAAAATACTTTCAACATTCGTTACAAAATAAATTGTTAACTTCAAAAGTGAAACTATAATAGTATAATTATAACTTTCATCCTAATACAAAATAAAATAATTTCAAAAGTTTGTCTCTTCAGTTTCTTCCAACACCTCCATTTAAGAAGACAAAGGGAGCAGAGTGCTTCACATTCATCCTCTCTCAGGTTCTTCTTCTTCTTCTCTGTTAACACAAACTCTCTGTTTTTATGGTTCTTGTTCTATAGAATTTTGATATCAAGATTGCATTTTCATTTTTTGGGTATGCTTTAATATGGTGAAATTGAAGTGGGGTTTGCTTAAAACTTGATGTGGTTAATGTTTTCCAAGGACATGATGTGTTGGTAGGTGTAGGTCTATCATGGATGTGTTTCAGTAGTGGCGGAATTAGGATTTTCACTAGGTTGAAATAGGAATAATAAGTTTCTAAGTTTTGAATAACTAAAACAACACTTATTTTACTTGGATTTGATACTCTTATTTTCTGCAGATTCTTGTTGTAGTAGTCATTTGATGTTATGCTTCCAAATGGGAAAAAAACAACTTTTACCTCCGCGATGTACTTAGCAACCTTCATGATAGTGTAATTGATGACATTCTAATGAGGTTGCCTTTACGAAATGTTGTGAGGACAAGCATCTTATCAAGGAATGGAGATATAATTGGCATAGACTTCCGCAACAGAAATTTGATCAAACACTTTGGAAAACAACAGAGGACTTGATGTGACCTACAACTCGATTTACTAAAATTGTCTATCACTTCTTGGCAGTTCATGTAGGACCAATTACTAAATTTACTCTTGACATTCGTGATCTAATAACATGTCCTAATATTGATCATTTGATATATTTCCTCTCTAGGAATGACATTCAACATCTTGTCTTTTAACCTCCGTTTAGGAGTAAGCCATATGAATTGCCTTCTGCATATTTTACATGTTCACAATTGAGGTATCTGTTTCTCAAAGACTTTCAAATACGTCCCCCTCCGTTCTTTGAGGGATTGATTAGTTTAATTATCTTAGCACTATATGAAGTCACAATTTCTTCTGAATTTCTTGGAAGTATAATTTCAAATTGCCCGTTGCTTGAGAATTTGGTGGTGCAACATAACGCTATTACAAATCACATTGAAATTAGTGCTCCCAAGCTAAGGCCATTTATCTTCACTGGCAATATAAAGTTTTTACATTTAAAGAATGTCCCTCTTCTTTCCAAATTTTCATATGAGCCTACAAAATTTTCGGGAGAGGTAGAACATGATATTGACAAGATTTTTGAGTCTATTCCTGCTCTCGAGAATTTGTGCTGGAGTCACGAGTCTGTTCAGGTAATATAGCTTCATAACTTGCATTTTCATAACTTTGAGTCATCCTGATTTTCGACATTTTCTTCCTAGGACGTGTATATTGGACCAACTCCCTTATGCTCTTTTCTGTATTAAACACCTTCACATATCTTGCATTAATCTAGGATTACTCTTTGATCTTTCGTTTGCTCTTTGCTTGATAAGAAGCTTTCCAAATTTAGAAGAAATTGAAATCGAGGTTGTTAATTATGTTTACTTTTCTCTCTGTTTTTCCTATGTATTTGACTTTCTTATGATCTTTAATTTTAAATCAAGGCTGATGGTTTTTCTCAATCTTTCTTAGAACTATTTTGAACATGCGCGCCGGGAGTCTGTTGATGATATTCCTGAAAGTTTCTTGGATATGACATTTAATCAACGAGGACAGTAGAAATTTATGATGTAACAGGAGTAGCAGCTGAAATGCAGCTTATCCAGGTTTTATTGTCCGAGTCTCCAACGCTGGTCAGAATGATAACCAAGCCTTGTGAAACAGAAGATAAAGAATCTTTTAAAGTACTCACTGAGGTAACAAAATTTCAGCGTACATCATCTAAAGCAGAAGTTGTGTATAGTGTAGAATAGAATCCATATTACGATCCTGTTTGATCTTAACTAGTCTTTAATCAGATCATAATCTTTTGCTAAAATAATTTGAAATCGTAAAAAGAATGTTGATACAACAGATAGGCTGTTATTTTGTATTTGCCAGTGTGAATACCATCAGTTTGTGAACATAAGTGAATCTGGATGTATGTTTTTGATTAATCTATTTCAATGTCTGTTCTTTGAATGATATATGGAATGACTCTTTGGTTGGTTATTGATAATTTTAATATATTCATTGTGGTCCTCATGGTCATTGTGCATTGTTTTTTATTTGATATGATCATGACATGAGTTGAGCGTAAATGGAATAGTGAGGATTCATATAGTCGATTTCAACTAGTTGTTTTATGAGAGCCAACGACGTTGTTGACACATTGTTCTGAATAGTGAGAAAGAATGAAATTCGATCAAATCCCTTGATCTTAATGGTTAGTAAACAATACCCCTTTGGAATGGAAAATATAATCCCTTTCAACAACATTTTTAATGAGAATTATGATACAATATACATTATAAGCTGAAATTGAATTTCAACAATATTATTCTTACAAGCTCATTGTTACAATTCCACATCCCAGAAAAATTATCACTTAAAATAGGAAAAGGGGAAAAAAAGGTGTGGGGGTGGGGGTGGGGTCAGTTGTTCATAAATAAGTCTTTTCCCTATTTAGTCAGAATATATACCATTCCTTTATGCAGCTTCCATATAATCATATATATACAAGCTCAATCGAACCCTATTGCAGACAAAAAGTCTGGTATATAAGTGGAGGAGAGTAATGGGGCGGGTCTATCCTCCACTGAGTTATGAATCGTGCACTATTGACCCTCGAGGACTTCTTGGTTATAAAAAAAGAACAAAAAAAAAGCTCCATAATATACAACAATATTACTTGATCATTCTATCTTAGATGCCCTTTTTTTTTGTTTCATCTAATTGATTATCTTTCATAATCTAAAGCAGAAGTTGTGTATCTTGTTGATTAGTATCGTTATCACAATCCTTCTTAATCTTTAGTTAAAATGTTTTGGAAGTACAAACAGAAACGAGACCTTCGGTTGATGGAGTAGTAAGGCTGTGTTTTGCCTTTTCTTTTAAGGTACTAAAAATATTTTATCTGCTTGGAAACATAGAATTGTGAATGTTTCGAATACTCTGTTTGGTAACAGAGATGGTTTTTACA-TTCATGCTTGTTCTT-AAATGATGTATGATTTGAGACTTTGGTTGTTTATTTCAAA</genome_strand>
        <mrna_strand>CTAGAGAATTAG-TCTAGAGGACGAAGATGATTTTGTCAATATTTTTTCGTCTATTGTTGCTCTCCAGTGTTTCAGCATGGATCTTTTTGAG................................................................................................TTCGATAATGGAACAACTAAAGTTATACCAACAAGGCTTCCATCAGTTCTTAACTGTCTGAAATGCCTATTCATGTCTTGGATTACTCTTGGAGAGTTTTTTAAGCTTTCGTTTGCTCTTTGCATTATAAAGAGCTCTCCAAATTTGGAAGAAATTGAAATTAAG............................................................................................GAATTTTTCTTTAGTGATGGAGATTATTTCGAATCTGTGTCCCAGGAGGTTGTTGATGAGATTCTTCCAAGCTTTTCGGATATCACATTTAATCATCTAAGGACAGTTAAGTTTTATGATATACCATTAGAAGAGGTTGAAATACAGCTTATCAAGGTTTTATTGGCAAAGCCTCCAACATTGGTGAAAATGGTAATCAAGCCTCGTCAAATGGAAACTATCAAATCTCTCAACTTACTCGCGGAGATAACAAAGTTTTAACAGGCACCATCTAAAGCAGAAGTTGTGTATCTTTTTTATTAGTATCGTTATCACAATCCTTCCTAATCTTTGGTTAAAATATTTTTGAAGTACAAACAGAAACGAGACATTTGGTTGATGGAGTAACAAGACTGTGTTTTGCCTTCGCTTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATAAAGATTTTATCTGCTTGGAAGCATAGAATTGTATATGTTTTGTATACTCTGTTTGGGAACAGAGATGGTTTTTACATTTCATGGATGCTCTTAAAATGATATATGATTTGAGTCTTTGGTTGTTTATTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539762" ref_strand="+" ref_description="SGN-E539762 [TUS-59-L2](-)">
      <seq>cttccatcagttcttacctgtctgaaatgcctattcatgtcttggattactcttggagagtttttaaagctttcgtttgctctttgcattataaagagctctccaaatttggaagaaattgaaattaaggaatttttctttagtgatggagattatttcgaatctgtgtcccaggaggttgttgatgagattcttccaagcttttcggatatcacatttaatcatctaaggacagttaagttttatgatataccattagaagaggttgaaatacagcttatcaaggttttattggcaaagcctccaacattggtgaaaatggtaatcaagcctcgtcaaatggaaactatcaaatctctcaacttactcgcggagataacaaagttttaacaggcaccatctaaagcagaagttgtgtatcttttttattagtatcgttatcacaatccttcctaatctttggttaaaatatttttgaagtacaaacagaaacgagacatttggttgatggagtaacaagactgtgttttgccttcgctttaaggtactataaagattttatctgcttggaagcatagaattgtatatgttttgtatactctgtttgggaacagagatggtttttacatttcatggatgctcttaaatgatatatgatttgagtctttggttgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0028J22-kGReU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0028J22.1" temp_strand="+" temp_description="C04SLm0028J22.1  CU457806.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0028J22 sequenced_by:sanger upload_account_name:uk">
        <position start="94450" stop="105785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94750" g_stop="94878" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94879" i_stop="94970" i_length="92">
            <donor d_prob="0.912" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94971" g_stop="95385" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="544" r_length="415" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95386" i_stop="105353" i_length="9968">
            <donor d_prob="0.860" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105354" g_stop="105494" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="686" r_length="142" r_score="0.851"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0028J22.1" gen_strand="+" ref_id="SGN-E539762" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0028J22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94750" e_stop="94878"/>
          <exon e_start="94971" e_stop="95385"/>
          <exon e_start="105354" e_stop="105494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCATCAGTTCTTAACTGTCAGAAACGCCTGTTCATGTCTTGGATTACTCTTGGAGAGTTTTTTGAGCTTTCGTTTGCTCTTTGCATTATAAAGATCTCTCCAAATTAGGAAGAAAATGAAATTAAGGTTGTCACTAATGTTTATTTTTCTCTCTAGCTTTTCCATGTTTTTATATTTGTATGTAATGACTTGATGGTTTTCTTCTTCATTTTTCTTAGGAATGTATCCTTAGTGATGGAGATTATTTCGAATCTGTGCCCCAGGAGGTTGTTGATGAGATTCTTGCGAGCTTTTTGGATATCACATTTAATCATCTGAGGACAGTTAAGCTTTATGATATACCATTAGAAGAGGTTGAAATGCAGCTTATCAAGGTTTTATTAGAAAAGTCTCCAGCACTGGCGAAAATGGTAATCAAGCCTCGTCAAATGGAAACTAACAAATCTCTCAACGTACTTGCGGAGATAACAAAGTTTCAACGGGCATCATCTAAAGCAGAAGTTGTGTATCTTTTTGATTATTATCGTTATCACAATTCTTCTTAATATTTGGCTAAAATATTTTGGTAGTACAAACAGAAACGAGACGTTTGGTTGATGGAGTAGCAAGGCTGTGTTTTGCCTTTGCTTTAAGGTACTATAAAAATTTTATCTGCTTGGAAACATAGAATTGTGAACCTGGATAAATGTTTTGAATACTCTATTTGGGAACAAAGATGGTTTTACATTTCATGCTTGTTATTGATTTAAGACTTTGGTTGTTTATTTTGAAATTATGTTGTTGTTGTTCATATTGTATTCCAAACATACTTAGAACAAAACTTTGAACATCTTTGTAAGAAAACAAAGTTTAAGAACATTTTCACAACTAGAAAATTAAAACTAGTAGAGAAAATAGAATCAGAAACAGATTTCAAAAAAAAATATACGAAATATTTTTCTTAAAGAAGAATTGTTGTTAATACGTGTCTAAAGAATCTTACTGATTCCAACAAACTTTGCAGAAACACGAAGTTACCAAGTTTAATGAACCAGTGAAGAACAAAAGAATAGAAGAACTGAAATTAATTCGCAAATCTAATGTTTGTAAAACACATATCAGAATCTGGAAAATTTTTAATAGGAAAAATATCAAGTCCACTTAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATGACCTCCCAGGGTAAAATGATCTCAATCACCAGAGTATAGATACCAAAAACTCTGGTGTCAGCGAACCACTCAATGGCAGTAAAGTACACTTAGAATACTAGATTTAGTAGTTGAAGAAGAAATCCATAAATTCTATTTATAATGAGAGGAAATCCCTCAATTTATAGAAAACAAAGGATAGTGCGAAAAGGTTCTTATTGTGCCTTACCGGAAAGGTCACAAACCTTTGGAAAAGTACAATCTTTCAGAAAGGTCGTCACCTTTCATAAAAGTAACAACTTTTCATAAAAGTCACAACTTTTCATAAAAGTCGCAACTTTTCATAAAAGTCGCAACTTTTCATAAAAGTCACAACTTTTCATAAAAGTCGCAACATTTCATAAAAGTCACAACTCTTCATAAAAGTCGCAATCTTCATTTTCCATTCACACCTTTTTTAAAATCCAACAATCCCCCGCATGAATGGAGAATGACTCAAAGACAAAGAAACGGACAAGTATGTGTACTTTACAAGCAAGAATTAATTGCATCTGGATAAGTAGGTTTCCCCTTGGACTTTCCGTAGTGAACATATGTCGGATATACTCGGTCAATCGGTAGATGCGATATCTTTGAACCGTCGAACTTTGGTGTATACCTGACAACCATATGTCACACAATTAACCCTTTACCGTTTATGGTTATTACGGTTGTGTTCGTTTTAGCCATGAACACCTCCTGGTTTCAGGAGTGTATAGAGAGATGGGCTTTTTACAATCACTTCTTTGAAGCGGCTTACACTTCACACTCACATAGGTGATTCCTAACCGTGTTATCGCGTAGATACACTATTTGGTCAACTCTGCCAAACTTAGCAAATCATTAAAACCATTAAGCTTTATTAACTCATTAACAAGCCTTAATGTTGTATACTCGTCCCTGAGCATTGTCTTCATCATGAGAATGGATTGAGTTTGTTGATAATGCCGAACCGTCATTCACAACTTTGTTTTTCTCCTCGAATCTAGCTCTTAAGATCTCCAGTCTGCTAGATAGAGTTACAGCCATGATGACTTGTCCTAAGCCGTAAATTCATTCCCTTAGATGATCTTTTAACTTCCTCTCTAGTTAGGCCTTTTTGTAAGTGGATCCGACACATTATCCTTTGACTTAACATAGTCAATTCTGATAATTCCACTAGAGAGTAGTTTTCTAACGATATCATGTCTATGTCGTATATGACGAGACTTTCCGTTGTACGTCATGCTCCATGCCCTACCTATTGCATCTTGACTGTGAAAGTGTATGCATACTAATGCCAATGGTTTCGGCAAAAATAGAATATCTATCAAGAAATTTCGGAGTCTTGCAACTTATTTACCGACCTTATCTAGAGCACCTAGCTCAAAGATCATTGTAGAGATAGCGATACATGTATCTTTTGAAATATTTCTAAGAGACTGCTCCTCTACCAATAGTAAATACATATCCACTCGTGAATTTTACTTCATTCGTCCGATGATTCATTTTGCATCACTATATCTTTCAATATTGTTGGATATTGTTATAATGCACGACATAGTTTTAAGTATTATTTTAAATACTCCAAAACTCTATTTATTGTCATCTAATGAATTTATTTGGGATCGCTTGTAAACCGACTCAGTTTAAAATAGCAGATGCTATATCTGATCGAACACACTATATGATATACAACATGCTTCCCAAAACTCTAGAACAATCCAATTGTGAGTACCTTTTGTTTTCACTCTTTTCAAATGCATAGATCACATTTATTGGAGATTTGACAATATTGGCATCCAAATATTTGAACTAGTTAAGTACCTTTTCAATGCAATGAGACCATGAAAATGCTAAACATTATGGATTTCTACGAATTCTTATATCTAAGATCGCATTAGCAACTCCAATAATTTCCATTCCACTTGCTTTGTAGCATACATTTAGTAGCATTTATGTTATTAGTGTCTCAATTGATGATCAACATATCACCAATATACAAACAAACAATGACATTATGATTTAATGTGAACACATTTATCACTTCCATCATTCTTCAATCCATTTGTCGACATGGTTTGATCAAATTATGTCATTGTTTGGGTGTATCCATAATGTAATTTAACAAGTTCACACACTTTCTTTTATTTATTAGGAACCACAAAACCCTCGGGTTGTTCCATGTAAATTTCTTTCTCCAATTCTACATTTAAGAAAGTTCTTTTCACATTCAATTGATGAATTTGGAGGTCATATACCACACTAATAATTTTTGCATCCGAATGGATATAATTCTAATTACTAACGAGTATATATATATTGACAAGATCAAAACCTTGCTTTTTTCTTCTCTAAAGCCTTTGACACAAAGTCTTGCTTTATATTTTTTGACAGTTCCATCAACTGTTATTTTCCTTCTAAAGATTCACTTTGAACCCAAAGATTTATTTTCTTGAAGAAAATCAATTAACTTTCAATATTGTTTATTGAAACCATCTTTCCAAAGATGAGTCTACAGAAGACACAGGAAATGTTACAAAATCATATTCAAAGGAAGTAAATGTCCTTTAACATTTACTAAGCCTCTGAATTTCTTTATTAAGTACATTATCCTTTTCATTTTCAAGGCCTTTTAGACCGTTTTCTAGACTCTCAAGTCTAATTTTACAGTCCACAGTGATAGTTCCTATTTTAATTCTTTTAGGAATAGGAACTTGGACTTTGACTAGATACTCACACACGTTGAAATACTTCAAGTTGGATTTCCTTTCTTTCCATTTCTCATATGGAAAAGATTGTATTCTAATCAAACAAAGTCACTTTCTTTCTAAAAAGACAACTTTTTGTTGTTCCCTTTTGCAATAAGGATAGTTCCTCCACACAAATTTTGTGTAAACCAGAACTTATAAATAATGCATCCATCATTTGTTTCAACGTTCGGTTTTTCATTAGATTGAGGTGAATATGACAATAGTTTGATGGATATTCCACTTTCCAAACATATTTCTGCACAATAAGATTTATACTCTCCATTCTTATCACTTCTTATATTTTTTCACACTGATTTTCAACTTCGATATTACATTGTCTAGACATTTCTATTGCTTCATCCATACCATTCAACAAATAGACATAAGCATTTATAATGCAATTCTCAATAAAAGTAACAAATACTTTTTCCCACCATGAGATGGTGTTAATTTCATATCACAAATGTCAGTGTAAATTAATTCTAAGGGTTTAGAATTCCTTTCAACAGATTTATAAGAATGTTCAACATAATTAGATTCCACAAAACTTGACATTTTTATTTATTGCACTCAAAGTTAGGCAAAACTCCTAAGTTGATTAATTTTCTTTACATGGTTTTGTAATTGACGTGCCCCAAGTGTTCATGTCACAAACATTGACTCAAGCAAGTAAGAACAAATAAAAAACATTGAGTTTGAAAAAGCTCTTCGTGAGGTAGCTTTTTCCTCACTAATATTTTGTTCCTATTTCTTACAATTTTGTGTGATACAAACATTGTTTAGATTGTCAAATGTCCTTTTCAGAAGGACATTTCCATAACTTTCAATATGATTGTTATAGTACTACCCATGAACAAAGTTTCATCGGGTTCAATAAAGACAATATAGTCCAAATGTTATTTTTACAAAAACATAACAAATGACTATTCAACAATATTCATGTCTATGCAAATACTTTTATTATAATAGACATATCTTTTCATGAAAAATCACAACATTTTAAGTGATTTTTCCCCATAAAAGAACACAATTATTTTGAACAAGTATATATAATAATTTGGATGTTTCATACTAGTCACACTATATACTAGTAATAGAGAAACTCAACAACCACAATACCAAATATACCCTAAGAATTTTGTGGGTATAACATAATACAAAAGTATCATTGAATTTCATATCTTTTGCTCCAAAGTTAAATTAGACACCAAGTCTGATCATAAGCAAATAACCCCCACATTTCAAATGTAATCTCAAAAATATTTTTCAAGTATTTTGAAAATAGTTTTTCCACATATTTTAATGTTGGAAACATTATTCTACGAAAGAATTATAGTGCTGCAATTCTCTTTGACAATGTATACACAATGTCAAAGTTCATTACATAAAGACACAAAATCACAAATTCTAAGTCACTGGTATTTTTTCTCTATCATAAATAGACATGCCACTTAGTATTTTAAATATTAACAATAAGGACAAAACAAAATTGTACAATTTATTTCTATGTTATATTGAAGTTAATAGAAAATCAAAATTACAACATTGACTTATTATGTGAAGTTTTCATATTCTTCAAACCAATTGCAGAGTCCAATTTATCCAGAGTATAAAACCACAAAAATTTTTAGTCTACAAAAATCAGAGACACTAACATTTCTCATGGAGTACAAAACTACAAAAGTCTTTTTTTTGTCCAAACAGAATAACACATATTCTTTATCACATAGAAATGTTTTTCTTATCAAATAGTCTTCCAACTATAACAATTTGACATACTATTTTATCAAACAAAAATATGCATCTCTCATTTTTGCAAACTAAAGAATTTTAAAAGCAACAATATCTGCGAAGTAAAATTCATTCCACAACATATGGTTTGCAAATCTTTTTCCAAAGATACACATAATAATAAAAAAATAAAAAATGATTACTCTTAGAAACTATTTTCCTCCTTAGATAATTTAATAAGAAGGTTTCCTGGTAATCTTTAAACGGAATACCATAAATTTTTTTGTTACATTCTCACTTCGACTTTGGTAAAACAAAGGAACGAATTATGGAGAAGTAATGCATTTATTTCTACTTCCATGATCAGATTCTCTCATTCAGTAGAATACAAAAAAATACTAACAACATAATAATTTCCTTAAGATTGTTGTTCATATTGTATTCCAAACATACTTAGAACAAAACTTTGAACATCTTTGTAAGAAAACAAAGTTTAAGAACATTTTCACAACTAGAAAATTAAAACTAGTAGAGAAACTAGAATCAGAAACAGATTTCAAAAAAAAATATACGAAATATTTTTCTTAAAGAAGAATTGTTGTTAATATGTGTCTAAGGAATCTTACTGATTCCAACAAACTTTGCAGAAACACGAAGTTACCAAGTTTAATGAACGAGTGAAGAATAAAAGAATAGAAGAACTGAAATTAATTCACAAACCTAATGTTTGTAAAACACATATCAGAATCTGGAAAATTTTTAATAGGAAAAAGATCAACTCCACTGAATTCACAATGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATGACCTCCCAGGGTAAAATGATCTCAATCACCAGAGTATAGATACCAAAAACTCCGGTGTCAGCGAATTACTCAACGGCAGTAAAGTACACTTAGAATACTAGATTTAGTAGTTGAAGAAGAAATCCATAAATTCTATTTAAAATGAGAGGAAATCCGTCAATTTATAGAAAACAAAGGATAGTGCGAAAAGGTTCTTATTGTGCCTTACCGGAAAGGTCACAAACCTTTGGAAAAGTCACAATCTTTCAGAAAGGTCGTCACCTTTCATAAAAGTAACAACTTTTCATAAAAGTCACAACTTTTCATAAAAGTCGCAATATTTCATAAAAGTCACAACTCTTCATAAAAGTCGCAACTCTTCATTTTTCATTCACACCTTTTTTAAAATCCAACAGTGTGTTGCAGAACTAAGAAAGATTTTGCATGACATTCTTGTTATTAATTCATCTCTAAAATAAGACATAGCTTTGGAAGTTGGAACTGTCACGGGCTAATTCAGGTAGAAAATGAAAAACACATGATGATTTACATATAAAACTCGCAAAAGGAAAAAGAAAATGAAACTTTAACTGTGTCTTAATTAGCTTTTCCTTAATTTTTTCTTCTACAATATATTCTCTCTATTTTAATATTAGTGATGCATCTTAAATAAGATATATTACATACTTTAACATGTAAGATGACCGTATGATATACAAAATATTTAAACGACAAAATGTATTTTACTTGGGAGTTAATATATATACTCTTAGAATCATTAATAAAAACGAAAAAAGAAGTTTTAGTTGTTAAATACGAAAGTAAATTTGCTCTTTATTTTAGATGGGGGCACAAAGGTCGATTTGATTTAATTTTTAATTAAAAAAACCTAAACTATTATTTCATTTTATTATTTTTTTGATTTTCTTATAATTGCATGATGATTGAAAAATAGATTAAATATATTTTCAAAATTTTCAAAAAACGATAAAATTCACATAGATAAAAAATACTTTCAACATTCGTTACAAAATAAATTGTTAACTTCAAAAGTGAAACTATAATAGTATAATTATAACTTTCATCCTAATACAAAATAAAATAATTTCAAAAGTTTGTCTCTTCAGTTTCTTCCAACACCTCCATTTAAGAAGACAAAGGGAGCAGAGTGCTTCACATTCATCCTCTCTCAGGTTCTTCTTCTTCTTCTCTGTTAACACAAACTCTCTGTTTTTATGGTTCTTGTTCTATAGAATTTTGATATCAAGATTGCATTTTCATTTTTTGGGTATGCTTTAATATGGTGAAATTGAAGTGGGGTTTGCTTAAAACTTGATGTGGTTAATGTTTTCCAAGGACATGATGTGTTGGTAGGTGTAGGTCTATCATGGATGTGTTTCAGTAGTGGCGGAATTAGGATTTTCACTAGGTTGAAATAGGAATAATAAGTTTCTAAGTTTTGAATAACTAAAACAACACTTATTTTACTTGGATTTGATACTCTTATTTTCTGCAGATTCTTGTTGTAGTAGTCATTTGATGTTATGCTTCCAAATGGGAAAAAAACAACTTTTACCTCCGCGATGTACTTAGCAACCTTCATGATAGTGTAATTGATGACATTCTAATGAGGTTGCCTTTACGAAATGTTGTGAGGACAAGCATCTTATCAAGGAATGGAGATATAATTGGCATAGACTTCCGCAACAGAAATTTGATCAAACACTTTGGAAAACAACAGAGGACTTGATGTGACCTACAACTCGATTTACTAAAATTGTCTATCACTTCTTGGCAGTTCATGTAGGACCAATTACTAAATTTACTCTTGACATTCGTGATCTAATAACATGTCCTAATATTGATCATTTGATATATTTCCTCTCTAGGAATGACATTCAACATCTTGTCTTTTAACCTCCGTTTAGGAGTAAGCCATATGAATTGCCTTCTGCATATTTTACATGTTCACAATTGAGGTATCTGTTTCTCAAAGACTTTCAAATACGTCCCCCTCCGTTCTTTGAGGGATTGATTAGTTTAATTATCTTAGCACTATATGAAGTCACAATTTCTTCTGAATTTCTTGGAAGTATAATTTCAAATTGCCCGTTGCTTGAGAATTTGGTGGTGCAACATAACGCTATTACAAATCACATTGAAATTAGTGCTCCCAAGCTAAGGCCATTTATCTTCACTGGCAATATAAAGTTTTTACATTTAAAGAATGTCCCTCTTCTTTCCAAATTTTCATATGAGCCTACAAAATTTTCGGGAGAGGTAGAACATGATATTGACAAGATTTTTGAGTCTATTCCTGCTCTCGAGAATTTGTGCTGGAGTCACGAGTCTGTTCAGGTAATATAGCTTCATAACTTGCATTTTCATAACTTTGAGTCATCCTGATTTTCGACATTTTCTTCCTAGGACGTGTATATTGGACCAACTCCCTTATGCTCTTTTCTGTATTAAACACCTTCACATATCTTGCATTAATCTAGGATTACTCTTTGATCTTTCGTTTGCTCTTTGCTTGATAAGAAGCTTTCCAAATTTAGAAGAAATTGAAATCGAGGTTGTTAATTATGTTTACTTTTCTCTCTGTTTTTCCTATGTATTTGACTTTCTTATGATCTTTAATTTTAAATCAAGGCTGATGGTTTTTCTCAATCTTTCTTAGAACTATTTTGAACATGCGCGCCGGGAGTCTGTTGATGATATTCCTGAAAGTTTCTTGGATATGACATTTAATCAACGAGGACAGTAGAAATTTATGATGTAACAGGAGTAGCAGCTGAAATGCAGCTTATCCAGGTTTTATTGTCCGAGTCTCCAACGCTGGTCAGAATGATAACCAAGCCTTGTGAAACAGAAGATAAAGAATCTTTTAAAGTACTCACTGAGGTAACAAAATTTCAGCGTACATCATCTAAAGCAGAAGTTGTGTATAGTGTAGAATAGAATCCATATTACGATCCTGTTTGATCTTAACTAGTCTTTAATCAGATCATAATCTTTTGCTAAAATAATTTGAAATCGTAAAAAGAATGTTGATACAACAGATAGGCTGTTATTTTGTATTTGCCAGTGTGAATACCATCAGTTTGTGAACATAAGTGAATCTGGATGTATGTTTTTGATTAATCTATTTCAATGTCTGTTCTTTGAATGATATATGGAATGACTCTTTGGTTGGTTATTGATAATTTTAATATATTCATTGTGGTCCTCATGGTCATTGTGCATTGTTTTTTATTTGATATGATCATGACATGAGTTGAGCGTAAATGGAATAGTGAGGATTCATATAGTCGATTTCAACTAGTTGTTTTATGAGAGCCAACGACGTTGTTGACACATTGTTCTGAATAGTGAGAAAGAATGAAATTCGATCAAATCCCTTGATCTTAATGGTTAGTAAACAATACCCCTTTGGAATGGAAAATATAATCCCTTTCAACAACATTTTTAATGAGAATTATGATACAATATACATTATAAGCTGAAATTGAATTTCAACAATATTATTCTTACAAGCTCATTGTTACAATTCCACATCCCAGAAAAATTATCACTTAAAATAGGAAAAGGGGAAAAAAAGGTGTGGGGGTGGGGGTGGGGTCAGTTGTTCATAAATAAGTCTTTTCCCTATTTAGTCAGAATATATACCATTCCTTTATGCAGCTTCCATATAATCATATATATACAAGCTCAATCGAACCCTATTGCAGACAAAAAGTCTGGTATATAAGTGGAGGAGAGTAATGGGGCGGGTCTATCCTCCACTGAGTTATGAATCGTGCACTATTGACCCTCGAGGACTTCTTGGTTATAAAAAAAGAACAAAAAAAAAGCTCCATAATATACAACAATATTACTTGATCATTCTATCTTAGATGCCCTTTTTTTTTGTTTCATCTAATTGATTATCTTTCATAATCTAAAGCAGAAGTTGTGTATCTTGTTGATTAGTATCGTTATCACAATCCTTCTTAATCTTTAGTTAAAATGTTTTGGAAGTACAAACAGAAACGAGACCTTCGGTTGATGGAGTAGTAAGGCTGTGTTTTGCCTTTTCTTTTAAGGTACTAAAAATATTTTATCTGCTTGGAAACATAGAATTGTGAATGTTTCGAATACTCTGTTTGGTAACAGAGATGGTTTTTACA-TTCATGCTTGTTCTTAAATGATGTATGATTTGAGACTTTGGTTGTTTATTTCAAAGT</genome_strand>
        <mrna_strand>CTTCCATCAGTTCTTACCTGTCTGAAATGCCTATTCATGTCTTGGATTACTCTTGGAGAGTTTTTAAAGCTTTCGTTTGCTCTTTGCATTATAAAGAGCTCTCCAAATTTGGAAGAAATTGAAATTAAG............................................................................................GAATTTTTCTTTAGTGATGGAGATTATTTCGAATCTGTGTCCCAGGAGGTTGTTGATGAGATTCTTCCAAGCTTTTCGGATATCACATTTAATCATCTAAGGACAGTTAAGTTTTATGATATACCATTAGAAGAGGTTGAAATACAGCTTATCAAGGTTTTATTGGCAAAGCCTCCAACATTGGTGAAAATGGTAATCAAGCCTCGTCAAATGGAAACTATCAAATCTCTCAACTTACTCGCGGAGATAACAAAGTTTTAACAGGCACCATCTAAAGCAGAAGTTGTGTATCTTTTTTATTAGTATCGTTATCACAATCCTTCCTAATCTTTGGTTAAAATATTTTTGAAGTACAAACAGAAACGAGACATTTGGTTGATGGAGTAACAAGACTGTGTTTTGCCTTCGCTTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATAAAGATTTTATCTGCTTGGAAGCATAGAATTGTATATGTTTTGTATACTCTGTTTGGGAACAGAGATGGTTTTTACATTTCATGGATGCTCTTAAATGATATATGATTTGAGTCTTTGGTTGTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5450" PGL_stop="5872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5450" e_stop="5872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="5450" e_stop="5872" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5450" stop="5872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGGCCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTAGGGCTGAATTTTGACTGCGAAAATCTGCTCTTTTTCTCTCTTTTTGACTGCTAAAAACTCTCTGTGTATTTG</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  G  H  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  G  I  A  I  *  S  W  L  L  G  L  N  F  D  C  E  N  L  L  F  F  S  L  F  D  C  *  K  L  S  V  Y  L </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  A  T  K  S  N  S  V  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  *  G  *  I  L  T  A  K  I  C  S  F  S  L  F  L  T  A  K  N  S  L  C  I   </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  C  S  R  Q  Q  N  *  S  C  R  P  P  N  P  T  L  S  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  R  N  L  K  L  A  V  R  A  E  F  *  L  R  K  S  A  L  F  L  S  F  *  L  L  K  T  L  C  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0028J22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="51349" PGL_stop="38653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51349" e_stop="50941"/>
            <exon e_start="48544" e_stop="48415"/>
            <exon e_start="48083" e_stop="48078"/>
            <exon e_start="47982" e_stop="47899"/>
            <exon e_start="47782" e_stop="47719"/>
            <exon e_start="40612" e_stop="40563"/>
            <exon e_start="38975" e_stop="38661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="0.932"/>
          <exon-intron don_prob="0.921" acc_prob="0.359" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.716" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="0.898"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="51349" e_stop="50941" e_length="409"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="50940" i_stop="48545" i_length="2396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48544" e_stop="48415" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.359">
            <gDNA_intron_boundary i_start="48414" i_stop="48084" i_length="331"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48083" e_stop="48078" e_length="6"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48077" i_stop="47983" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47982" e_stop="47899" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.716">
            <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47782" e_stop="47719" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.857" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40612" e_stop="40563" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.911" acc_prob="0.916">
            <gDNA_intron_boundary i_start="40562" i_stop="38976" i_length="1587"/>
          </intron>
          <exon e_serial="7" e_score="0.898">
            <gDNA_exon_boundary e_start="38975" e_stop="38661" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51349" stop="50941"/>
              <exon start="48544" stop="48415"/>
              <exon start="48083" stop="48078"/>
              <exon start="47982" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51323" stop="50941"/>
              <exon start="48544" stop="48415"/>
              <exon start="48083" stop="48078"/>
              <exon start="47982" stop="47899"/>
              <exon start="47782" stop="47773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51315" stop="50941"/>
              <exon start="48544" stop="48461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51281" stop="50941"/>
              <exon start="48544" stop="48415"/>
              <exon start="48083" stop="48078"/>
              <exon start="47982" stop="47899"/>
              <exon start="47782" stop="47719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51272" stop="50941"/>
              <exon start="48544" stop="48415"/>
              <exon start="48083" stop="48078"/>
              <exon start="47982" stop="47899"/>
              <exon start="47782" stop="47735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51245" stop="50941"/>
              <exon start="48544" stop="48415"/>
              <exon start="48083" stop="48078"/>
              <exon start="47982" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
              <exon start="38975" stop="38954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51132" stop="50941"/>
              <exon start="48544" stop="48415"/>
              <exon start="48083" stop="48078"/>
              <exon start="47982" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
              <exon start="38975" stop="38741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425837" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48083" stop="48078"/>
              <exon start="47982" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
              <exon start="38975" stop="38736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614992" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47958" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
              <exon start="38975" stop="38718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47950" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
              <exon start="38975" stop="38718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47927" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
              <exon start="38975" stop="38661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGCGTAAAAATAGGTTCTTCTTACGGCTGTCCCTGCCGTTGGATCTGTGTATAGCGCAGAAAGCCATTAAAGCTCAGCATCCATTTTCCGCCAAATTCCTTTGTCAAACAAAACTTAACAAAATATTCTGTTTGATCAACCTCTACCTACGATCATCCATAGATTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAGAAGGCATTGCCTGCTAATGGGAAGATCGCTAAGGATTCTAAAGACACGGTTCAGGAATGCGTATCTGAGTTCATCAGTTTTATTACTAGCGA : AGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGATACAGAGAG : ATGGAG : GGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAG : TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA : GATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAG : AACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCAAACATTTGGATCTGTTCTATTCTTCTAGTGTTTTTTGATATTGATTTTCCAAAAAAAAAA</gDNA_template>
            <first_frame> C  A  *  K  *  V  L  L  T  A  V  P  A  V  G  S  V  Y  S  A  E  S  H  *  S  S  A  S  I  F  R  Q  I  P  L  S  N  K  T  *  Q  N  I  L  F  D  Q  P  L  P  T  I  I  H  R  F  R  V  P  V  H  *  E  W  R  S  R  Q  V  Q  E  A  A  A  E  A  M  R  V  A  V  T  R  V  L  S  P  T  C  E  N  R  I  G  T  Y  R  S  L  I  L  D  A  *  *  R  R  H  C  L  L  M  G  R  S  L  R  I  L  K  T  R  F  R  N  A  Y  L  S  S  S  V  L  L  L  A   : K  L  V  T  S  V  R  K  R  R  E  R  R  S  T  E  M  I  Y  Y  Q  P  W  L  P  W  D  L  R  T  T  L  N  H  *  R  S  I  *  L  D  T  E  R :   W  R :   E  M  P  R  D  L  Q  G  L  V  M  H  L  L  E  K  M  *  L  D  V  S  L  G  P  I  R  S :   S  C  M  K  V  L  L  H  K  A  *  T  M  E  T  P  N  Y  E  F  *  :  D  E  Q  R  T  L  D  A  Y  P  K  K  S  *  I  H  R :   T  V  V  S  L  L  L  V  Q  D  A  R  V  S  L  L  A  D  I  C  V  K  L  S  T  T  L  L  V  L  V  *  E  D  *  T  P  K  G  F  L  L  I  S  A  N  I  F  V  C  Y  T  L  I  L  I  L  F  R  S  V  H  T  I  W  F  *  M  S  L  G  T  N  H  L  L  *  F  V  Q  H  L  S  A  Q  T  F  G  S  V  L  F  F  *  C  F  L  I  L  I  F  Q  K  K   </first_frame>
            <second_frame>  V  R  K  N  R  F  F  L  R  L  S  L  P  L  D  L  C  I  A  Q  K  A  I  K  A  Q  H  P  F  S  A  K  F  L  C  Q  T  K  L  N  K  I  F  C  L  I  N  L  Y  L  R  S  S  I  D  L  G  F  R  Y  T  E  N  G  G  A  G  K  S  R  R  R  R  R  K  P  *  E  W  R  *  P  E  S  S  V  Q  L  A  R  T  G  *  V  P  T  D  R  *  Y  W  T  H  N  E  E  G  I  A  C  *  W  E  D  R  *  G  F  *  R  H  G  S  G  M  R  I  *  V  H  Q  F  Y  Y  *  R  :  S  *  *  Q  V  S  E  R  E  E  K  D  D  Q  R  R  *  F  T  I  S  P  G  Y  L  G  I  *  G  L  H  *  T  T  E  G  L  F  D  S  I  Q  R   : D  G   : G  R  C  Q  G  I  C  K  G  W  *  C  I  C  *  K  R  C  S  W  M  S  A  W  V  Q  Y  A   : V  H  V  *  R  F  F  C  T  R  L  R  L  W  K  L  P  I  M  N  F  K :   M  N  K  E  L  W  M  H  T  Q  K  K  A  E  Y  I   : E  Q  W  L  V  F  C  W  Y  K  M  P  G  F  L  F  L  L  I  S  V  L  N  C  Q  Q  H  C  W  Y  L  F  E  R  T  R  R  L  K  D  S  Y  *  F  L  Q  I  Y  L  F  A  I  L  *  F  *  F  S  S  A  L  Y  I  P  F  G  F  E  C  H  L  E  Q  T  I  Y  Y  S  L  Y  S  T  *  V  P  K  H  L  D  L  F  Y  S  S  S  V  F  *  Y  *  F  S  K  K  K  </second_frame>
            <third_frame>   C  V  K  I  G  S  S  Y  G  C  P  C  R  W  I  C  V  *  R  R  K  P  L  K  L  S  I  H  F  P  P  N  S  F  V  K  Q  N  L  T  K  Y  S  V  *  S  T  S  T  Y  D  H  P  *  I  *  G  S  G  T  L  R  M  A  E  P  A  S  P  G  G  G  G  G  S  H  E  S  G  G  D  P  S  P  Q  S  N  L  R  E  Q  D  R  Y  L  P  I  A  N  I  G  R  I  M  K  K  A  L  P  A  N  G  K  I  A  K  D  S  K  D  T  V  Q  E  C  V  S  E  F  I  S  F  I  T  S  E :   A  S  D  K  C  Q  K  E  K  R  K  T  I  N  G  D  D  L  L  S  A  L  A  T  L  G  F  E  D  Y  I  E  P  L  K  V  Y  L  T  R  Y  R  E  :  M  E  :  G  D  A  K  G  S  A  R  V  G  D  A  S  V  R  K  D  V  V  G  C  Q  L  G  S  N  T  Q  :  F  M  Y  E  G  S  F  A  Q  G  L  D  Y  G  N  S  Q  L  *  I  L   : R  *  T  K  N  F  G  C  I  P  K  K  K  L  N  T  *  :  N  S  G  *  S  F  A  G  T  R  C  Q  G  F  S  S  C  *  Y  L  C  *  T  V  N  N  I  V  G  T  C  L  R  G  L  D  A  *  R  I  P  T  N  F  C  K  Y  I  C  L  L  Y  F  D  F  N  S  L  P  L  C  T  Y  H  L  V  L  N  V  T  W  N  K  P  S  I  I  V  C  T  A  P  K  C  P  N  I  W  I  C  S  I  L  L  V  F  F  D  I  D  F  P  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51179" stop="50941"/>
                    <exon start="48544" stop="48415"/>
                    <exon start="48083" stop="48078"/>
                    <exon start="47982" stop="47899"/>
                    <exon start="47782" stop="47726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSGTLRMAEPASPGGGGGSHESGGDPSPQSNLREQDRYLPIANIGRIMKKALPANGKIAKDSKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLSALATLGFEDYIEPLKVYLTRYREMEGDAKGSARVGDASVRKDVVGCQLGSNTQFMYEGSFAQGLDYGNSQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38861" stop="38661"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIPTNFCKYICLLYFDFNSLPLCTYHLVLNVTWNKPSIIVCTAPKCPNIWICSILLVFFDIDFPKKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51349" e_stop="50941"/>
            <exon e_start="48544" e_stop="48415"/>
            <exon e_start="48083" e_stop="48078"/>
            <exon e_start="47982" e_stop="47899"/>
            <exon e_start="47782" e_stop="47719"/>
            <exon e_start="40612" e_stop="40563"/>
            <exon e_start="38970" e_stop="38653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="0.932"/>
          <exon-intron don_prob="0.921" acc_prob="0.359" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.716" e_score="0.988"/>
          <exon-intron don_prob="0.857" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.257" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="51349" e_stop="50941" e_length="409"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="50940" i_stop="48545" i_length="2396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48544" e_stop="48415" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.359">
            <gDNA_intron_boundary i_start="48414" i_stop="48084" i_length="331"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48083" e_stop="48078" e_length="6"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48077" i_stop="47983" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="47982" e_stop="47899" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.716">
            <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47782" e_stop="47719" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.857" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40612" e_stop="40563" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.911" acc_prob="0.257">
            <gDNA_intron_boundary i_start="40562" i_stop="38971" i_length="1592"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="38970" e_stop="38653" e_length="318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51349" stop="50941"/>
              <exon start="48544" stop="48415"/>
              <exon start="48083" stop="48078"/>
              <exon start="47982" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51323" stop="50941"/>
              <exon start="48544" stop="48415"/>
              <exon start="48083" stop="48078"/>
              <exon start="47982" stop="47899"/>
              <exon start="47782" stop="47773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51315" stop="50941"/>
              <exon start="48544" stop="48461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51281" stop="50941"/>
              <exon start="48544" stop="48415"/>
              <exon start="48083" stop="48078"/>
              <exon start="47982" stop="47899"/>
              <exon start="47782" stop="47719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51272" stop="50941"/>
              <exon start="48544" stop="48415"/>
              <exon start="48083" stop="48078"/>
              <exon start="47982" stop="47899"/>
              <exon start="47782" stop="47735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40612" stop="40563"/>
              <exon start="38970" stop="38653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGCGTAAAAATAGGTTCTTCTTACGGCTGTCCCTGCCGTTGGATCTGTGTATAGCGCAGAAAGCCATTAAAGCTCAGCATCCATTTTCCGCCAAATTCCTTTGTCAAACAAAACTTAACAAAATATTCTGTTTGATCAACCTCTACCTACGATCATCCATAGATTTAGGGTTCCGGTACACTGAGAATGGCGGAGCCGGCAAGTCCAGGAGGCGGCGGCGGAAGCCATGAGAGTGGCGGTGACCCGAGTCCTCAGTCCAACTTGCGAGAACAGGATAGGTACCTACCGATCGCTAATATTGGACGCATAATGAAGAAGGCATTGCCTGCTAATGGGAAGATCGCTAAGGATTCTAAAGACACGGTTCAGGAATGCGTATCTGAGTTCATCAGTTTTATTACTAGCGA : AGCTAGTGACAAGTGTCAGAAAGAGAAGAGAAAGACGATCAACGGAGATGATTTACTATCAGCCCTGGCTACCTTGGGATTTGAGGACTACATTGAACCACTGAAGGTCTATTTGACTCGATACAGAGAG : ATGGAG : GGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAG : TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA : GATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAG : TGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCAAACATTTGGATCTGTTCTATTCTTCTAGTGTTTTTTGATATTGATTTTCCAAAAAAAAAAAGAGAATG</gDNA_template>
            <first_frame> C  A  *  K  *  V  L  L  T  A  V  P  A  V  G  S  V  Y  S  A  E  S  H  *  S  S  A  S  I  F  R  Q  I  P  L  S  N  K  T  *  Q  N  I  L  F  D  Q  P  L  P  T  I  I  H  R  F  R  V  P  V  H  *  E  W  R  S  R  Q  V  Q  E  A  A  A  E  A  M  R  V  A  V  T  R  V  L  S  P  T  C  E  N  R  I  G  T  Y  R  S  L  I  L  D  A  *  *  R  R  H  C  L  L  M  G  R  S  L  R  I  L  K  T  R  F  R  N  A  Y  L  S  S  S  V  L  L  L  A   : K  L  V  T  S  V  R  K  R  R  E  R  R  S  T  E  M  I  Y  Y  Q  P  W  L  P  W  D  L  R  T  T  L  N  H  *  R  S  I  *  L  D  T  E  R :   W  R :   E  M  P  R  D  L  Q  G  L  V  M  H  L  L  E  K  M  *  L  D  V  S  L  G  P  I  R  S :   S  C  M  K  V  L  L  H  K  A  *  T  M  E  T  P  N  Y  E  F  *  :  D  E  Q  R  T  L  D  A  Y  P  K  K  S  *  I  H  S :   G  *  S  F  A  G  T  R  C  Q  G  F  S  S  C  *  Y  L  C  *  T  V  N  N  I  V  G  T  C  L  R  G  L  D  A  *  R  I  P  T  N  F  C  K  Y  I  C  L  L  Y  F  D  F  N  S  L  P  L  C  T  Y  H  L  V  L  N  V  T  W  N  K  P  S  I  I  V  C  T  A  P  K  C  P  N  I  W  I  C  S  I  L  L  V  F  F  D  I  D  F  P  K  K  K  R  E   </first_frame>
            <second_frame>  V  R  K  N  R  F  F  L  R  L  S  L  P  L  D  L  C  I  A  Q  K  A  I  K  A  Q  H  P  F  S  A  K  F  L  C  Q  T  K  L  N  K  I  F  C  L  I  N  L  Y  L  R  S  S  I  D  L  G  F  R  Y  T  E  N  G  G  A  G  K  S  R  R  R  R  R  K  P  *  E  W  R  *  P  E  S  S  V  Q  L  A  R  T  G  *  V  P  T  D  R  *  Y  W  T  H  N  E  E  G  I  A  C  *  W  E  D  R  *  G  F  *  R  H  G  S  G  M  R  I  *  V  H  Q  F  Y  Y  *  R  :  S  *  *  Q  V  S  E  R  E  E  K  D  D  Q  R  R  *  F  T  I  S  P  G  Y  L  G  I  *  G  L  H  *  T  T  E  G  L  F  D  S  I  Q  R   : D  G   : G  R  C  Q  G  I  C  K  G  W  *  C  I  C  *  K  R  C  S  W  M  S  A  W  V  Q  Y  A   : V  H  V  *  R  F  F  C  T  R  L  R  L  W  K  L  P  I  M  N  F  K :   M  N  K  E  L  W  M  H  T  Q  K  K  A  E  Y  I   : V  V  S  L  L  L  V  Q  D  A  R  V  S  L  L  A  D  I  C  V  K  L  S  T  T  L  L  V  L  V  *  E  D  *  T  P  K  G  F  L  L  I  S  A  N  I  F  V  C  Y  T  L  I  L  I  L  F  R  S  V  H  T  I  W  F  *  M  S  L  G  T  N  H  L  L  *  F  V  Q  H  L  S  A  Q  T  F  G  S  V  L  F  F  *  C  F  L  I  L  I  F  Q  K  K  K  E  N  </second_frame>
            <third_frame>   C  V  K  I  G  S  S  Y  G  C  P  C  R  W  I  C  V  *  R  R  K  P  L  K  L  S  I  H  F  P  P  N  S  F  V  K  Q  N  L  T  K  Y  S  V  *  S  T  S  T  Y  D  H  P  *  I  *  G  S  G  T  L  R  M  A  E  P  A  S  P  G  G  G  G  G  S  H  E  S  G  G  D  P  S  P  Q  S  N  L  R  E  Q  D  R  Y  L  P  I  A  N  I  G  R  I  M  K  K  A  L  P  A  N  G  K  I  A  K  D  S  K  D  T  V  Q  E  C  V  S  E  F  I  S  F  I  T  S  E :   A  S  D  K  C  Q  K  E  K  R  K  T  I  N  G  D  D  L  L  S  A  L  A  T  L  G  F  E  D  Y  I  E  P  L  K  V  Y  L  T  R  Y  R  E  :  M  E  :  G  D  A  K  G  S  A  R  V  G  D  A  S  V  R  K  D  V  V  G  C  Q  L  G  S  N  T  Q  :  F  M  Y  E  G  S  F  A  Q  G  L  D  Y  G  N  S  Q  L  *  I  L   : R  *  T  K  N  F  G  C  I  P  K  K  K  L  N  T  *  :  W  L  V  F  C  W  Y  K  M  P  G  F  L  F  L  L  I  S  V  L  N  C  Q  Q  H  C  W  Y  L  F  E  R  T  R  R  L  K  D  S  Y  *  F  L  Q  I  Y  L  F  A  I  L  *  F  *  F  S  S  A  L  Y  I  P  F  G  F  E  C  H  L  E  Q  T  I  Y  Y  S  L  Y  S  T  *  V  P  K  H  L  D  L  F  Y  S  S  S  V  F  *  Y  *  F  S  K  K  K  K  R  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51179" stop="50941"/>
                    <exon start="48544" stop="48415"/>
                    <exon start="48083" stop="48078"/>
                    <exon start="47982" stop="47899"/>
                    <exon start="47782" stop="47726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSGTLRMAEPASPGGGGGSHESGGDPSPQSNLREQDRYLPIANIGRIMKKALPANGKIAKDSKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLSALATLGFEDYIEPLKVYLTRYREMEGDAKGSARVGDASVRKDVVGCQLGSNTQFMYEGSFAQGLDYGNSQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38861" stop="38655"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIPTNFCKYICLLYFDFNSLPLCTYHLVLNVTWNKPSIIVCTAPKCPNIWICSILLVFFDIDFPKKKRE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="47985" e_stop="47899"/>
            <exon e_start="47782" e_stop="47719"/>
            <exon e_start="40612" e_stop="40563"/>
            <exon e_start="38975" e_stop="38661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.716" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="0.898"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47985" e_stop="47899" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.716">
            <gDNA_intron_boundary i_start="47898" i_stop="47783" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47782" e_stop="47719" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.857" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47718" i_stop="40613" i_length="7106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40612" e_stop="40563" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.911" acc_prob="0.916">
            <gDNA_intron_boundary i_start="40562" i_stop="38976" i_length="1587"/>
          </intron>
          <exon e_serial="4" e_score="0.898">
            <gDNA_exon_boundary e_start="38975" e_stop="38661" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47985" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
              <exon start="38975" stop="38744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47958" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
              <exon start="38975" stop="38718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47950" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
              <exon start="38975" stop="38718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47927" stop="47899"/>
              <exon start="47782" stop="47719"/>
              <exon start="40612" stop="40563"/>
              <exon start="38975" stop="38661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGGAGATGCCAAGGGATCTGCAAGGGTTGGTGATGCATCTGTTAGAAAAGATGTAGTTGGATGTCAGCTTGGGTCCAATACGCAG : TTCATGTATGAAGGTTCTTTTGCACAAGGCTTAGACTATGGAAACTCCCAATTATGAATTTTAA : GATGAACAAAGAACTTTGGATGCATACCCAAAAAAAAGCTGAATACATAG : AACAGTGGTTAGTCTTTTGCTGGTACAAGATGCCAGGGTTTCTCTTCTTGCTGATATCTGTGTTAAACTGTCAACAACATTGTTGGTACTTGTTTGAGAGGACTAGACGCCTAAAGGATTCCTACTAATTTCTGCAAATATATTTGTTTGCTATACTTTGATTTTAATTCTCTTCCGCTCTGTACATACCATTTGGTTTTGAATGTCACTTGGAACAAACCATCTATTATAGTTTGTACAGCACCTAAGTGCCCAAACATTTGGATCTGTTCTATTCTTCTAGTGTTTTTTGATATTGATTTTCCAAAAAAAAAA</gDNA_template>
            <first_frame> Q  G  D  A  K  G  S  A  R  V  G  D  A  S  V  R  K  D  V  V  G  C  Q  L  G  S  N  T  Q  :  F  M  Y  E  G  S  F  A  Q  G  L  D  Y  G  N  S  Q  L  *  I  L   : R  *  T  K  N  F  G  C  I  P  K  K  K  L  N  T  *  :  N  S  G  *  S  F  A  G  T  R  C  Q  G  F  S  S  C  *  Y  L  C  *  T  V  N  N  I  V  G  T  C  L  R  G  L  D  A  *  R  I  P  T  N  F  C  K  Y  I  C  L  L  Y  F  D  F  N  S  L  P  L  C  T  Y  H  L  V  L  N  V  T  W  N  K  P  S  I  I  V  C  T  A  P  K  C  P  N  I  W  I  C  S  I  L  L  V  F  F  D  I  D  F  P  K  K  K </first_frame>
            <second_frame>  R  E  M  P  R  D  L  Q  G  L  V  M  H  L  L  E  K  M  *  L  D  V  S  L  G  P  I  R  S :   S  C  M  K  V  L  L  H  K  A  *  T  M  E  T  P  N  Y  E  F  *  :  D  E  Q  R  T  L  D  A  Y  P  K  K  S  *  I  H  R :   T  V  V  S  L  L  L  V  Q  D  A  R  V  S  L  L  A  D  I  C  V  K  L  S  T  T  L  L  V  L  V  *  E  D  *  T  P  K  G  F  L  L  I  S  A  N  I  F  V  C  Y  T  L  I  L  I  L  F  R  S  V  H  T  I  W  F  *  M  S  L  G  T  N  H  L  L  *  F  V  Q  H  L  S  A  Q  T  F  G  S  V  L  F  F  *  C  F  L  I  L  I  F  Q  K  K   </second_frame>
            <third_frame>   G  R  C  Q  G  I  C  K  G  W  *  C  I  C  *  K  R  C  S  W  M  S  A  W  V  Q  Y  A   : V  H  V  *  R  F  F  C  T  R  L  R  L  W  K  L  P  I  M  N  F  K :   M  N  K  E  L  W  M  H  T  Q  K  K  A  E  Y  I   : E  Q  W  L  V  F  C  W  Y  K  M  P  G  F  L  F  L  L  I  S  V  L  N  C  Q  Q  H  C  W  Y  L  F  E  R  T  R  R  L  K  D  S  Y  *  F  L  Q  I  Y  L  F  A  I  L  *  F  *  F  S  S  A  L  Y  I  P  F  G  F  E  C  H  L  E  Q  T  I  Y  Y  S  L  Y  S  T  *  V  P  K  H  L  D  L  F  Y  S  S  S  V  F  *  Y  *  F  S  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47771" stop="47719"/>
                    <exon start="40612" stop="40563"/>
                    <exon start="38975" stop="38848"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFFCTRLRLWKLPIMNFKMNKELWMHTQKKAEYIEQWLVFCWYKMPGFLFLLISVLNCQQHCWYLFERTRRLKDSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38861" stop="38661"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIPTNFCKYICLLYFDFNSLPLCTYHLVLNVTWNKPSIIVCTAPKCPNIWICSILLVFFDIDFPKKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="42841" PGL_stop="43403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42841" e_stop="43403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="42841" e_stop="43403" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42841" stop="43403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAGGTAAAGTGTTTCTCTTGGTTGGTTGCCAGAAGAGCATGCTCCACACATGAGAAATTGAAAAGGAGGGGTTTCTATGTTGCCTCTTAGTGCTCTCTCTGTAATGAGACTGAGGAAACCAACAACCATTTGTTCCTCCATTGCGAAGTGACAACACAATTGTGGTACATTTTTTTGGGACTAGCACATACAAAATGGTTTATGCCTGAGCATACAACAGATCTACTTAGTTGTTGGATCAACAGAGGGGGGAGAAAATCTAAGAAAAAGTGGAGTATAATAACATCATGCATTTGGCGGTGTATTTGGAAAGAAAGAAATAGCAGATGTTATGATAGCAAAGCTAATCCAATAGAGAAAGTAAAATGGAACTCTGCTTGACTACTTTTTATTTTTAGTGTAAAGAGGAAGGAATAGAAGAAGCTGCACAAATTTTGGATTTTATAGGCACTTTGTAATCTATTAGCATCACCTTTGTTTTTTCTCCTGTGGGAAACTAATTATTGAAGGTCTCCAACATATCCTTGATGCTGATGTATACAACATTATCTTTATCAATTT</gDNA_template>
            <first_frame> P  R  *  S  V  S  L  G  W  L  P  E  E  H  A  P  H  M  R  N  *  K  G  G  V  S  M  L  P  L  S  A  L  S  V  M  R  L  R  K  P  T  T  I  C  S  S  I  A  K  *  Q  H  N  C  G  T  F  F  W  D  *  H  I  Q  N  G  L  C  L  S  I  Q  Q  I  Y  L  V  V  G  S  T  E  G  G  E  N  L  R  K  S  G  V  *  *  H  H  A  F  G  G  V  F  G  K  K  E  I  A  D  V  M  I  A  K  L  I  Q  *  R  K  *  N  G  T  L  L  D  Y  F  L  F  L  V  *  R  G  R  N  R  R  S  C  T  N  F  G  F  Y  R  H  F  V  I  Y  *  H  H  L  C  F  F  S  C  G  K  L  I  I  E  G  L  Q  H  I  L  D  A  D  V  Y  N  I  I  F  I  N   </first_frame>
            <second_frame>  Q  G  K  V  F  L  L  V  G  C  Q  K  S  M  L  H  T  *  E  I  E  K  E  G  F  L  C  C  L  L  V  L  S  L  *  *  D  *  G  N  Q  Q  P  F  V  P  P  L  R  S  D  N  T  I  V  V  H  F  F  G  T  S  T  Y  K  M  V  Y  A  *  A  Y  N  R  S  T  *  L  L  D  Q  Q  R  G  E  K  I  *  E  K  V  E  Y  N  N  I  M  H  L  A  V  Y  L  E  R  K  K  *  Q  M  L  *  *  Q  S  *  S  N  R  E  S  K  M  E  L  C  L  T  T  F  Y  F  *  C  K  E  E  G  I  E  E  A  A  Q  I  L  D  F  I  G  T  L  *  S  I  S  I  T  F  V  F  S  P  V  G  N  *  L  L  K  V  S  N  I  S  L  M  L  M  Y  T  T  L  S  L  S  I  </second_frame>
            <third_frame>   K  V  K  C  F  S  W  L  V  A  R  R  A  C  S  T  H  E  K  L  K  R  R  G  F  Y  V  A  S  *  C  S  L  C  N  E  T  E  E  T  N  N  H  L  F  L  H  C  E  V  T  T  Q  L  W  Y  I  F  L  G  L  A  H  T  K  W  F  M  P  E  H  T  T  D  L  L  S  C  W  I  N  R  G  G  R  K  S  K  K  K  W  S  I  I  T  S  C  I  W  R  C  I  W  K  E  R  N  S  R  C  Y  D  S  K  A  N  P  I  E  K  V  K  W  N  S  A  *  L  L  F  I  F  S  V  K  R  K  E  *  K  K  L  H  K  F  W  I  L  *  A  L  C  N  L  L  A  S  P  L  F  F  L  L  W  E  T  N  Y  *  R  S  P  T  Y  P  *  C  *  C  I  Q  H  Y  L  Y  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42933" stop="43223"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSLCNETEETNNHLFLHCEVTTQLWYIFLGLAHTKWFMPEHTTDLLSCWINRGGRKSKKKWSIITSCIWRCIWKERNSRCYDSKANPIEKVKWNSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="56788" PGL_stop="56112"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56788" e_stop="56263"/>
            <exon e_start="56174" e_stop="56112"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="0.947"/>
          <exon-only e_score="0.810"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="56788" e_stop="56263" e_length="526"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="56262" i_stop="56175" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.810">
            <gDNA_exon_boundary e_start="56174" e_stop="56112" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56788" stop="56263"/>
              <exon start="56174" stop="56112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAATGACAATGATGGTATCCAATACACATGTAACAAGATGAATGCATTGCAACATTGAATGGAATGGTGATGTTGGATTTGAAGTGTTAGAAGGGGTATACAAGCATACTGTGAATTTGGGTCAAGAAAAATGTAGTTGCAGATCATGGGAATTAAAAGGTATCCCATGTGCACATGGTATAGCAGCAATGAATTGCTTGAACATGGATGCATCATAAGCAATATCTAGTTGGTATAGAAAAGACACATATATGAAGACATATTCTCATTTCATTCAACCAGTCCCAAACATGGAAATGTGGCCTGAAAGCAAAAACCCAATGGTTAAACCACCTGAGGCAAGACAAATGCCTGGTAGGTCACCAAAGAACAGAAAAAGAGAAATTGGTGAAGTGAGAAAATCTGGAAAGTTGCCAAGAATGGGGACAGTAATGACATGTTCAATTTGCAAAGGACCAAATCATAACAAGATAAATTGTCCAAAAAATCCTAAACCTAAGTCTACACCAACACCCACTCAAGAG : TCCACCACTGAAAAAAAGAGGGATAAAGATCACTATGAAAGAGTAAGCACCAGTAAGACTGGT</gDNA_template>
            <first_frame> S  N  D  N  D  G  I  Q  Y  T  C  N  K  M  N  A  L  Q  H  *  M  E  W  *  C  W  I  *  S  V  R  R  G  I  Q  A  Y  C  E  F  G  S  R  K  M  *  L  Q  I  M  G  I  K  R  Y  P  M  C  T  W  Y  S  S  N  E  L  L  E  H  G  C  I  I  S  N  I  *  L  V  *  K  R  H  I  Y  E  D  I  F  S  F  H  S  T  S  P  K  H  G  N  V  A  *  K  Q  K  P  N  G  *  T  T  *  G  K  T  N  A  W  *  V  T  K  E  Q  K  K  R  N  W  *  S  E  K  I  W  K  V  A  K  N  G  D  S  N  D  M  F  N  L  Q  R  T  K  S  *  Q  D  K  L  S  K  K  S  *  T  *  V  Y  T  N  T  H  S  R   : V  H  H  *  K  K  E  G  *  R  S  L  *  K  S  K  H  Q  *  D  W  </first_frame>
            <second_frame>  P  M  T  M  M  V  S  N  T  H  V  T  R  *  M  H  C  N  I  E  W  N  G  D  V  G  F  E  V  L  E  G  V  Y  K  H  T  V  N  L  G  Q  E  K  C  S  C  R  S  W  E  L  K  G  I  P  C  A  H  G  I  A  A  M  N  C  L  N  M  D  A  S  *  A  I  S  S  W  Y  R  K  D  T  Y  M  K  T  Y  S  H  F  I  Q  P  V  P  N  M  E  M  W  P  E  S  K  N  P  M  V  K  P  P  E  A  R  Q  M  P  G  R  S  P  K  N  R  K  R  E  I  G  E  V  R  K  S  G  K  L  P  R  M  G  T  V  M  T  C  S  I  C  K  G  P  N  H  N  K  I  N  C  P  K  N  P  K  P  K  S  T  P  T  P  T  Q  E  :  S  T  T  E  K  K  R  D  K  D  H  Y  E  R  V  S  T  S  K  T  G </second_frame>
            <third_frame>   Q  *  Q  *  W  Y  P  I  H  M  *  Q  D  E  C  I  A  T  L  N  G  M  V  M  L  D  L  K  C  *  K  G  Y  T  S  I  L  *  I  W  V  K  K  N  V  V  A  D  H  G  N  *  K  V  S  H  V  H  M  V  *  Q  Q  *  I  A  *  T  W  M  H  H  K  Q  Y  L  V  G  I  E  K  T  H  I  *  R  H  I  L  I  S  F  N  Q  S  Q  T  W  K  C  G  L  K  A  K  T  Q  W  L  N  H  L  R  Q  D  K  C  L  V  G  H  Q  R  T  E  K  E  K  L  V  K  *  E  N  L  E  S  C  Q  E  W  G  Q  *  *  H  V  Q  F  A  K  D  Q  I  I  T  R  *  I  V  Q  K  I  L  N  L  S  L  H  Q  H  P  L  K  S :   P  P  L  K  K  R  G  I  K  I  T  M  K  E  *  A  P  V  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56568" stop="56263"/>
                    <exon start="56174" stop="56112"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AISSWYRKDTYMKTYSHFIQPVPNMEMWPESKNPMVKPPEARQMPGRSPKNRKREIGEVRKSGKLPRMGTVMTCSICKGPNHNKINCPKNPKPKSTPTPTQESTTEKKRDKDHYERVSTSKTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="75084" PGL_stop="70229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75084" e_stop="74902"/>
            <exon e_start="74589" e_stop="74468"/>
            <exon e_start="72733" e_stop="72630"/>
            <exon e_start="71891" e_stop="71806"/>
            <exon e_start="71402" e_stop="71293"/>
            <exon e_start="71197" e_stop="71165"/>
            <exon e_start="70497" e_stop="70229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.039" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="75084" e_stop="74902" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.039" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74901" i_stop="74590" i_length="312"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74589" e_stop="74468" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74467" i_stop="72734" i_length="1734"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72733" e_stop="72630" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.989">
            <gDNA_intron_boundary i_start="72629" i_stop="71892" i_length="738"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71891" e_stop="71806" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="71805" i_stop="71403" i_length="403"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71402" e_stop="71293" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.950" acc_prob="0.950">
            <gDNA_intron_boundary i_start="71292" i_stop="71198" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71197" e_stop="71165" e_length="33"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="71164" i_stop="70498" i_length="667"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="70497" e_stop="70229" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75084" stop="74902"/>
              <exon start="74589" stop="74468"/>
              <exon start="72733" stop="72630"/>
              <exon start="71891" stop="71806"/>
              <exon start="71402" stop="71293"/>
              <exon start="71197" stop="71165"/>
              <exon start="70497" stop="70229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553603" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCAGTGGACATGTTGATAGTTTGGAGGAACTTGAGGAAAAGTTTTCTACAGCTTTTGATGTTTATGTCCATGTTGGTTCCTATGTTCCTCCGCTCTTTGGTATTCACGAAAATGCAGCACATTTGGCAGTTGTAGGTCGTGGTAGACGCGTTGCAAATGCCAAATACTCAGATTGGGTTAG : GTAGGCAAAGGAAACAATTGGAGAAGCTGAGGCCACCTTCTGTCAACGAGCTCCTGTTGTCAAACAATGGCGATCAGATCTTAGAGGGTTGTTTGACTAATTTTTTTGTTGTTTGCCACAAG : GATGTTAATGGTGATAATCACAAGTCTACAGTTTCAATTGAATTGCAGACTGCCCCTATAAGAGATGGTGTCCTTCCAGGCGTTGTACGCCAAGTAATTCTTGA : CATATGCTCAAGAAACAAAATCCCAGTCAGAGAAATTGCACCTGCATGGTCAGAGCGTGAAACGTGGTCAGAAGCATTCATTACAA : GTAGCTTGAGGCTATTGCAGCATGTGGAAGTTATTCAAGCTCCTAGTTCGTGGGGATCACTTGATACACAAACTTGGACTGACGTATCTTGGGAGGAGAAGCGATTTGAG : AATGCTCCTGGACGGATCACTGCATTCATCCAG : AAGGAGGTCATGGAAATGGCAAGCACGGAAGGGTATCCAGTTTCTCTATTTAATGACCGGTAGATCTTCCCCTCATATAATATGTGCTAATTGTGGTACGATTGGAAAGGTCGTATCTTAAAAACACGATGTTTTAGCCTGCGATATCTTCCCTTCACACAACCCTGTTACATTTATTCTGGTGTACAATTGACTTTATGTTGAATCATTTGATTATAAGGAGAACCGTAATTAACTCAAACAAAGGTGAATAGTTCAATAACAGTTGT</gDNA_template>
            <first_frame> C  Q  W  T  C  *  *  F  G  G  T  *  G  K  V  F  Y  S  F  *  C  L  C  P  C  W  F  L  C  S  S  A  L  W  Y  S  R  K  C  S  T  F  G  S  C  R  S  W  *  T  R  C  K  C  Q  I  L  R  L  G  *  :  V  G  K  G  N  N  W  R  S  *  G  H  L  L  S  T  S  S  C  C  Q  T  M  A  I  R  S  *  R  V  V  *  L  I  F  L  L  F  A  T  R :   M  L  M  V  I  I  T  S  L  Q  F  Q  L  N  C  R  L  P  L  *  E  M  V  S  F  Q  A  L  Y  A  K  *  F  L   : T  Y  A  Q  E  T  K  S  Q  S  E  K  L  H  L  H  G  Q  S  V  K  R  G  Q  K  H  S  L  Q  :  V  A  *  G  Y  C  S  M  W  K  L  F  K  L  L  V  R  G  D  H  L  I  H  K  L  G  L  T  Y  L  G  R  R  S  D  L  R :   M  L  L  D  G  S  L  H  S  S  R :   R  R  S  W  K  W  Q  A  R  K  G  I  Q  F  L  Y  L  M  T  G  R  S  S  P  H  I  I  C  A  N  C  G  T  I  G  K  V  V  S  *  K  H  D  V  L  A  C  D  I  F  P  S  H  N  P  V  T  F  I  L  V  Y  N  *  L  Y  V  E  S  F  D  Y  K  E  N  R  N  *  L  K  Q  R  *  I  V  Q  *  Q  L  </first_frame>
            <second_frame>  V  S  G  H  V  D  S  L  E  E  L  E  E  K  F  S  T  A  F  D  V  Y  V  H  V  G  S  Y  V  P  P  L  F  G  I  H  E  N  A  A  H  L  A  V  V  G  R  G  R  R  V  A  N  A  K  Y  S  D  W  V  R :   *  A  K  E  T  I  G  E  A  E  A  T  F  C  Q  R  A  P  V  V  K  Q  W  R  S  D  L  R  G  L  F  D  *  F  F  C  C  L  P  Q   : G  C  *  W  *  *  S  Q  V  Y  S  F  N  *  I  A  D  C  P  Y  K  R  W  C  P  S  R  R  C  T  P  S  N  S  *  :  H  M  L  K  K  Q  N  P  S  Q  R  N  C  T  C  M  V  R  A  *  N  V  V  R  S  I  H  Y  K :   *  L  E  A  I  A  A  C  G  S  Y  S  S  S  *  F  V  G  I  T  *  Y  T  N  L  D  *  R  I  L  G  G  E  A  I  *   : E  C  S  W  T  D  H  C  I  H  P   : E  G  G  H  G  N  G  K  H  G  R  V  S  S  F  S  I  *  *  P  V  D  L  P  L  I  *  Y  V  L  I  V  V  R  L  E  R  S  Y  L  K  N  T  M  F  *  P  A  I  S  S  L  H  T  T  L  L  H  L  F  W  C  T  I  D  F  M  L  N  H  L  I  I  R  R  T  V  I  N  S  N  K  G  E  *  F  N  N  S  C </second_frame>
            <third_frame>   S  V  D  M  L  I  V  W  R  N  L  R  K  S  F  L  Q  L  L  M  F  M  S  M  L  V  P  M  F  L  R  S  L  V  F  T  K  M  Q  H  I  W  Q  L  *  V  V  V  D  A  L  Q  M  P  N  T  Q  I  G  L   : G  R  Q  R  K  Q  L  E  K  L  R  P  P  S  V  N  E  L  L  L  S  N  N  G  D  Q  I  L  E  G  C  L  T  N  F  F  V  V  C  H  K  :  D  V  N  G  D  N  H  K  S  T  V  S  I  E  L  Q  T  A  P  I  R  D  G  V  L  P  G  V  V  R  Q  V  I  L  D :   I  C  S  R  N  K  I  P  V  R  E  I  A  P  A  W  S  E  R  E  T  W  S  E  A  F  I  T   : S  S  L  R  L  L  Q  H  V  E  V  I  Q  A  P  S  S  W  G  S  L  D  T  Q  T  W  T  D  V  S  W  E  E  K  R  F  E  :  N  A  P  G  R  I  T  A  F  I  Q  :  K  E  V  M  E  M  A  S  T  E  G  Y  P  V  S  L  F  N  D  R  *  I  F  P  S  Y  N  M  C  *  L  W  Y  D  W  K  G  R  I  L  K  T  R  C  F  S  L  R  Y  L  P  F  T  Q  P  C  Y  I  Y  S  G  V  Q  L  T  L  C  *  I  I  *  L  *  G  E  P  *  L  T  Q  T  K  V  N  S  S  I  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74947" stop="74902"/>
                    <exon start="74589" stop="74468"/>
                    <exon start="72733" stop="72630"/>
                    <exon start="71891" stop="71806"/>
                    <exon start="71402" stop="71293"/>
                    <exon start="71197" stop="71165"/>
                    <exon start="70497" stop="70435"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVVDALQMPNTQIGLGRQRKQLEKLRPPSVNELLLSNNGDQILEGCLTNFFVVCHKDVNGDNHKSTVSIELQTAPIRDGVLPGVVRQVILDICSRNKIPVREIAPAWSERETWSEAFITSSLRLLQHVEVIQAPSSWGSLDTQTWTDVSWEEKRFENAPGRITAFIQKEVMEMASTEGYPVSLFNDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72709" e_stop="72354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="72709" e_stop="72354" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72709" stop="72354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTACAGTTTCAATTGAATTGCAGACTGCCCCTATAAGAGATGGTGTCCTTCCAGGCGTTGTACGCCAAGTAATTCTTGAGTGCGTTCCTTCTCTGGCCTTCGAAACTTGACATATTTTAAGTTAGAACTTAAGGTTACTGTATGGAACTTCATCTCGCATTTTGAGCAACTTATTCATCTGTAGAATGTAATAAATGCTGGTCTACTTGGAAGGGGTTACTGTTGTGTTGACTTGGTTATGCCTAATGTTTTATATGGTTGGCACAGATTCATTCTAGATCATTCTCTGTTGCCCTAATCCTATGTGTTCTGCACATATTACATACTGTACCATAAAGAATTTCCTTTACTGGTA</gDNA_template>
            <first_frame> S  T  V  S  I  E  L  Q  T  A  P  I  R  D  G  V  L  P  G  V  V  R  Q  V  I  L  E  C  V  P  S  L  A  F  E  T  *  H  I  L  S  *  N  L  R  L  L  Y  G  T  S  S  R  I  L  S  N  L  F  I  C  R  M  *  *  M  L  V  Y  L  E  G  V  T  V  V  L  T  W  L  C  L  M  F  Y  M  V  G  T  D  S  F  *  I  I  L  C  C  P  N  P  M  C  S  A  H  I  T  Y  C  T  I  K  N  F  L  Y  W   </first_frame>
            <second_frame>  L  Q  F  Q  L  N  C  R  L  P  L  *  E  M  V  S  F  Q  A  L  Y  A  K  *  F  L  S  A  F  L  L  W  P  S  K  L  D  I  F  *  V  R  T  *  G  Y  C  M  E  L  H  L  A  F  *  A  T  Y  S  S  V  E  C  N  K  C  W  S  T  W  K  G  L  L  L  C  *  L  G  Y  A  *  C  F  I  W  L  A  Q  I  H  S  R  S  F  S  V  A  L  I  L  C  V  L  H  I  L  H  T  V  P  *  R  I  S  F  T  G  </second_frame>
            <third_frame>   Y  S  F  N  *  I  A  D  C  P  Y  K  R  W  C  P  S  R  R  C  T  P  S  N  S  *  V  R  S  F  S  G  L  R  N  L  T  Y  F  K  L  E  L  K  V  T  V  W  N  F  I  S  H  F  E  Q  L  I  H  L  *  N  V  I  N  A  G  L  L  G  R  G  Y  C  C  V  D  L  V  M  P  N  V  L  Y  G  W  H  R  F  I  L  D  H  S  L  L  P  *  S  Y  V  F  C  T  Y  Y  I  L  Y  H  K  E  F  P  L  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0028J22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="93907" PGL_stop="105494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93907" e_stop="94617"/>
            <exon e_start="94714" e_stop="94878"/>
            <exon e_start="94971" e_stop="95385"/>
            <exon e_start="105354" e_stop="105494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.909"/>
          <exon-intron don_prob="0.912" acc_prob="0.997" e_score="0.945"/>
          <exon-intron don_prob="0.860" acc_prob="0.000" e_score="0.918"/>
          <exon-only e_score="0.871"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="93907" e_stop="94617" e_length="711"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94618" i_stop="94713" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="94714" e_stop="94878" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.912" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94879" i_stop="94970" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.918">
            <gDNA_exon_boundary e_start="94971" e_stop="95385" e_length="415"/>
          </exon>
          <intron i_serial="3" don_prob="0.860" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95386" i_stop="105353" i_length="9968"/>
          </intron>
          <exon e_serial="4" e_score="0.871">
            <gDNA_exon_boundary e_start="105354" e_stop="105494" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93907" stop="94617"/>
              <exon start="94714" stop="94798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93908" stop="94375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94527" stop="94617"/>
              <exon start="94714" stop="94878"/>
              <exon start="94971" stop="95385"/>
              <exon start="105354" stop="105492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94750" stop="94878"/>
              <exon start="94971" stop="95385"/>
              <exon start="105354" stop="105494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGATGTTGTTAGAGTTAGTACACTTTCGAAGGACTGGCAATATATTTGCTGGAGAATTCCACATATGAAGTTTGATCAAACAGTGTGGAAAATACCCGAGGACTTGACATCCCCTACCATTGGATTTATTCCTATTCTTGATTGTTTCCTCAGGTTTCATAGAGGAATAATATTGAACGTCACCCTCAATATTATTAATCTAATAGTGTGTCCTAATGTTGATCGTTTGATTTTTTCCCTCAACACTGATCACATTCAACATTTTGTCCTTAAACTTCCATTTACTTATCCTCCTCACAAGTTGCCAAACTTTTTTTTTGATTGTTCAGCATTAAGGCATTTGTATCTCAAGGAATGTGAAATACAACTTCCTTGTTTCTTTAAGGGATTTAATAAGTTGATTAGGGTAATATTGAAATCTGTCACGTTATCTTTTGATATGTTTGAAAGTTTGATCTCTAATTGCCCGTTGTTTGAGGATTTGGTGCTAAAAGACATAGTTAATCCGTACCTCATGAGTATTAATGCTCCTAAGCTAAGGTCATTTGTCTTTCGTGGCGCTATACAATTAATACATCTTGAAAATGTCCCTGTTCTTTCCAATGTTCTGTATGCACCTAGAGAATTAGTTTTAGAGGACGAAGATGATTTTGTCAATTTTTTTCGTCTATTCCTGCTCTCGAGTGCTTCAGCTGGGATCTTTTTGAG : GTCGATAATGGATCAACTAAAGTTATACCAACAAGGCTTCCATCAGTTCTTAACTGTCAGAAACGCCTGTTCATGTCTTGGATTACTCTTGGAGAGTTTTTTGAGCTTTCGTTTGCTCTTTGCATTATAAAGATCTCTCCAAATTAGGAAGAAAATGAAATTAAG : GAATGTATCCTTAGTGATGGAGATTATTTCGAATCTGTGCCCCAGGAGGTTGTTGATGAGATTCTTGCGAGCTTTTTGGATATCACATTTAATCATCTGAGGACAGTTAAGCTTTATGATATACCATTAGAAGAGGTTGAAATGCAGCTTATCAAGGTTTTATTAGAAAAGTCTCCAGCACTGGCGAAAATGGTAATCAAGCCTCGTCAAATGGAAACTAACAAATCTCTCAACGTACTTGCGGAGATAACAAAGTTTCAACGGGCATCATCTAAAGCAGAAGTTGTGTATCTTTTTGATTATTATCGTTATCACAATTCTTCTTAATATTTGGCTAAAATATTTTGGTAGTACAAACAGAAACGAGACGTTTGGTTGATGGAGTAGCAAGGCTGTGTTTTGCCTTTGCTTTAAG : GTACTAAAAATATTTTATCTGCTTGGAAACATAGAATTGTGAATGTTTCGAATACTCTGTTTGGTAACAGAGATGGTTTTTACATTCATGCTTGTTCTTAAATGATGTATGATTTGAGACTTTGGTTGTTTATTTCAAAGT</gDNA_template>
            <first_frame> L  R  C  C  *  S  *  Y  T  F  E  G  L  A  I  Y  L  L  E  N  S  T  Y  E  V  *  S  N  S  V  E  N  T  R  G  L  D  I  P  Y  H  W  I  Y  S  Y  S  *  L  F  P  Q  V  S  *  R  N  N  I  E  R  H  P  Q  Y  Y  *  S  N  S  V  S  *  C  *  S  F  D  F  F  P  Q  H  *  S  H  S  T  F  C  P  *  T  S  I  Y  L  S  S  S  Q  V  A  K  L  F  F  *  L  F  S  I  K  A  F  V  S  Q  G  M  *  N  T  T  S  L  F  L  *  G  I  *  *  V  D  *  G  N  I  E  I  C  H  V  I  F  *  Y  V  *  K  F  D  L  *  L  P  V  V  *  G  F  G  A  K  R  H  S  *  S  V  P  H  E  Y  *  C  S  *  A  K  V  I  C  L  S  W  R  Y  T  I  N  T  S  *  K  C  P  C  S  F  Q  C  S  V  C  T  *  R  I  S  F  R  G  R  R  *  F  C  Q  F  F  S  S  I  P  A  L  E  C  F  S  W  D  L  F  E  :  V  D  N  G  S  T  K  V  I  P  T  R  L  P  S  V  L  N  C  Q  K  R  L  F  M  S  W  I  T  L  G  E  F  F  E  L  S  F  A  L  C  I  I  K  I  S  P  N  *  E  E  N  E  I  K  :  E  C  I  L  S  D  G  D  Y  F  E  S  V  P  Q  E  V  V  D  E  I  L  A  S  F  L  D  I  T  F  N  H  L  R  T  V  K  L  Y  D  I  P  L  E  E  V  E  M  Q  L  I  K  V  L  L  E  K  S  P  A  L  A  K  M  V  I  K  P  R  Q  M  E  T  N  K  S  L  N  V  L  A  E  I  T  K  F  Q  R  A  S  S  K  A  E  V  V  Y  L  F  D  Y  Y  R  Y  H  N  S  S  *  Y  L  A  K  I  F  W  *  Y  K  Q  K  R  D  V  W  L  M  E  *  Q  G  C  V  L  P  L  L  *   : G  T  K  N  I  L  S  A  W  K  H  R  I  V  N  V  S  N  T  L  F  G  N  R  D  G  F  Y  I  H  A  C  S  *  M  M  Y  D  L  R  L  W  L  F  I  S  K  </first_frame>
            <second_frame>  *  D  V  V  R  V  S  T  L  S  K  D  W  Q  Y  I  C  W  R  I  P  H  M  K  F  D  Q  T  V  W  K  I  P  E  D  L  T  S  P  T  I  G  F  I  P  I  L  D  C  F  L  R  F  H  R  G  I  I  L  N  V  T  L  N  I  I  N  L  I  V  C  P  N  V  D  R  L  I  F  S  L  N  T  D  H  I  Q  H  F  V  L  K  L  P  F  T  Y  P  P  H  K  L  P  N  F  F  F  D  C  S  A  L  R  H  L  Y  L  K  E  C  E  I  Q  L  P  C  F  F  K  G  F  N  K  L  I  R  V  I  L  K  S  V  T  L  S  F  D  M  F  E  S  L  I  S  N  C  P  L  F  E  D  L  V  L  K  D  I  V  N  P  Y  L  M  S  I  N  A  P  K  L  R  S  F  V  F  R  G  A  I  Q  L  I  H  L  E  N  V  P  V  L  S  N  V  L  Y  A  P  R  E  L  V  L  E  D  E  D  D  F  V  N  F  F  R  L  F  L  L  S  S  A  S  A  G  I  F  L  R :   S  I  M  D  Q  L  K  L  Y  Q  Q  G  F  H  Q  F  L  T  V  R  N  A  C  S  C  L  G  L  L  L  E  S  F  L  S  F  R  L  L  F  A  L  *  R  S  L  Q  I  R  K  K  M  K  L  R :   N  V  S  L  V  M  E  I  I  S  N  L  C  P  R  R  L  L  M  R  F  L  R  A  F  W  I  S  H  L  I  I  *  G  Q  L  S  F  M  I  Y  H  *  K  R  L  K  C  S  L  S  R  F  Y  *  K  S  L  Q  H  W  R  K  W  *  S  S  L  V  K  W  K  L  T  N  L  S  T  Y  L  R  R  *  Q  S  F  N  G  H  H  L  K  Q  K  L  C  I  F  L  I  I  I  V  I  T  I  L  L  N  I  W  L  K  Y  F  G  S  T  N  R  N  E  T  F  G  *  W  S  S  K  A  V  F  C  L  C  F  K  :  V  L  K  I  F  Y  L  L  G  N  I  E  L  *  M  F  R  I  L  C  L  V  T  E  M  V  F  T  F  M  L  V  L  K  *  C  M  I  *  D  F  G  C  L  F  Q  S </second_frame>
            <third_frame>   E  M  L  L  E  L  V  H  F  R  R  T  G  N  I  F  A  G  E  F  H  I  *  S  L  I  K  Q  C  G  K  Y  P  R  T  *  H  P  L  P  L  D  L  F  L  F  L  I  V  S  S  G  F  I  E  E  *  Y  *  T  S  P  S  I  L  L  I  *  *  C  V  L  M  L  I  V  *  F  F  P  S  T  L  I  T  F  N  I  L  S  L  N  F  H  L  L  I  L  L  T  S  C  Q  T  F  F  L  I  V  Q  H  *  G  I  C  I  S  R  N  V  K  Y  N  F  L  V  S  L  R  D  L  I  S  *  L  G  *  Y  *  N  L  S  R  Y  L  L  I  C  L  K  V  *  S  L  I  A  R  C  L  R  I  W  C  *  K  T  *  L  I  R  T  S  *  V  L  M  L  L  S  *  G  H  L  S  F  V  A  L  Y  N  *  Y  I  L  K  M  S  L  F  F  P  M  F  C  M  H  L  E  N  *  F  *  R  T  K  M  I  L  S  I  F  F  V  Y  S  C  S  R  V  L  Q  L  G  S  F  *   : G  R  *  W  I  N  *  S  Y  T  N  K  A  S  I  S  S  *  L  S  E  T  P  V  H  V  L  D  Y  S  W  R  V  F  *  A  F  V  C  S  L  H  Y  K  D  L  S  K  L  G  R  K  *  N  *   : G  M  Y  P  *  *  W  R  L  F  R  I  C  A  P  G  G  C  *  *  D  S  C  E  L  F  G  Y  H  I  *  S  S  E  D  S  *  A  L  *  Y  T  I  R  R  G  *  N  A  A  Y  Q  G  F  I  R  K  V  S  S  T  G  E  N  G  N  Q  A  S  S  N  G  N  *  Q  I  S  Q  R  T  C  G  D  N  K  V  S  T  G  I  I  *  S  R  S  C  V  S  F  *  L  L  S  L  S  Q  F  F  L  I  F  G  *  N  I  L  V  V  Q  T  E  T  R  R  L  V  D  G  V  A  R  L  C  F  A  F  A  L  R :   Y  *  K  Y  F  I  C  L  E  T  *  N  C  E  C  F  E  Y  S  V  W  *  Q  R  W  F  L  H  S  C  L  F  L  N  D  V  *  F  E  T  L  V  V  Y  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93911" stop="94617"/>
                    <exon start="94714" stop="94843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVVRVSTLSKDWQYICWRIPHMKFDQTVWKIPEDLTSPTIGFIPILDCFLRFHRGIILNVTLNIINLIVCPNVDRLIFSLNTDHIQHFVLKLPFTYPPHKLPNFFFDCSALRHLYLKECEIQLPCFFKGFNKLIRVILKSVTLSFDMFESLISNCPLFEDLVLKDIVNPYLMSINAPKLRSFVFRGAIQLIHLENVPVLSNVLYAPRELVLEDEDDFVNFFRLFLLSSASAGIFLRSIMDQLKLYQQGFHQFLTVRNACSCLGLLLESFLSFRLLFAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0028J22.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94861" stop="94878"/>
                    <exon start="94971" stop="95297"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EENEIKECILSDGDYFESVPQEVVDEILASFLDITFNHLRTVKLYDIPLEEVEMQLIKVLLEKSPALAKMVIKPRQMETNKSLNVLAEITKFQRASSKAEVVYLFDYYRYHNSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 87 chains have been computed
$ 
$ memory statistics:
$ 46640 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 2120 bytes was the average size of a spliced alignment
$ 12536 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2089 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 107 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:53:03
-->
