<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:56:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372089" ref_strand="+" ref_description="SGN-E372089 [TUS-30-L22](-)">
      <seq>aatgttgatgagagcaaaagtagtactacctctaaaagtatcgtgtatctagtgaagaaggcggaagacaagtgatggagcagactggtaaagcaggagggattacgtccggtgtttttgaaagttgattgggacaaatgggttgataaagatgaagaagacagtaaacctgagccaaatatggattttggtgacatggacttctagaaactcaatatgggagaaggtcctagcaattttgatgtttatgtgcctgagggcgataatgacagtgacactgaagaaattgaggaacaaaagaactttgaacccaaggcagcagtgcctccaagcaccgaacccggagtgaaagcttgacgcattccagtgtttgtaacattgaaaactttttaactgcttgcttgagtttgagtgtggtacattcttctagcaatggttagagctgtagtgcaggaaatgtttgatgatcagttcataatatactttaaggatctgaaagggctggtgtcctcattgaactttgttatcatgtaatgcacattacatatgatttatcaaacatatataaaaaatatgtaatactgggtagtgcagtgcaacgttcagtttgcacacataacatgtggaaatccatgttatccttataagattgatgttgtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="5755" stop="4202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5550" g_stop="5542" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5541" i_stop="5451" i_length="91">
            <donor d_prob="0.813" d_score="0.00"/>
            <acceptor a_prob="0.671" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5450" g_stop="5291" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="169" r_length="160" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5290" i_stop="5211" i_length="80">
            <donor d_prob="0.056" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5210" g_stop="5173" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="207" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5172" i_stop="5078" i_length="95">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5077" g_stop="5026" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="259" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5025" i_stop="4905" i_length="121">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4904" g_stop="4498" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="667" r_length="408" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E372089" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5550" e_stop="5542"/>
          <exon e_start="5450" e_stop="5291"/>
          <exon e_start="5210" e_stop="5173"/>
          <exon e_start="5077" e_stop="5026"/>
          <exon e_start="4904" e_stop="4498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGATGTAAGTGAATTTCCATCAGTTTGCATCATCTGCAAATTTTTGTGCGAGATAGAAGAACCCATGTTAATTTTACTGTAAAATGATCATTCAGGAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAACGTAAGTATGAAGTCACTAGGGATATCTTCACTGTTGATATTAGCCACTTGGTATATTTGCTAACTATGAACTAATTTCAGCTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCGGTAAGCAGCTCTAAAGATATTAATAAGCGATAGTGTTAATTCGAGTCTATATTGATGCTGATATCTTAACATTCTCCCTTGTATTATTCTCTCAGAAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCCTGAGGGTAAGTCTGATTTGGTTCTGAGCAATTACTGATATTCTTAGCTTCAAATCGATTGCTTGGATTGGAAATTTGTTATTTCCATCCTCATCTAATATATAAATTGACAATGTTTGTGCAATAGGCGATGATGACAGTGACACTGAAGAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTGTGGTACATTCTTCTAGCAATGGTTAGAGCTGTAGTGCAGGAAATGTTTGATGATCAGTTCATGATATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGAACTTTGTTATCATGTACTGCACATTACATATGATTTCTCAAACATATATAAAAACTATGTAATACTGGCTAGTGCAGTGCAACGTTCAGTTTGCACA-ATAACATGTGGAAATCCATGTTATCCTTATAAGATTGATGTTGTATAATCGT</genome_strand>
        <mrna_strand>AATGTTGAT...........................................................................................GAGAGCAAAAGTAGTACTACCTCTAAAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGATGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATAAAGATGAAGAAGACAGTAAAC................................................................................CTGAGCCAAATATGGATTTTGGTGACATGGACTTCTAG...............................................................................................AAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTTATGTGCCTGAGG.........................................................................................................................GCGATAATGACAGTGACACTGAAGAAATTGAGGAACAAAAGAACTTTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTGTGGTACATTCTTCTAGCAATGGTTAGAGCTGTAGTGCAGGAAATGTTTGATGATCAGTTCATAATATACTTTAAGGATCTGAAAGGGCTGGTGTCCTCATTGAACTTTGTTATCATGTAATGCACATTACATATGATTTATCAAACATATATAAAAAATATGTAATACTGGGTAGTGCAGTGCAACGTTCAGTTTGCACACATAACATGTGGAAATCCATGTTATCCTTATAAGATTGATGTTGTATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340618" ref_strand="+" ref_description="SGN-E340618 [cTOF-1-E20]">
      <seq>tatatttgaaggatctgaaagggctggtgtcctcattgaactttgttatcatgtactgcacattacatatgatttctcaaacatatataaaaactatgtaatactggctagtgcagtgcaacgttcagtttgcacaataacatgtggaaatccatgttatccttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="4985" stop="4216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4685" g_stop="4510" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E340618" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4685" e_stop="4510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGAACTTTGTTATCATGTACTGCACATTACATATGATTTCTCAAACATATATAAAAACTATGTAATACTGGCTAGTGCAGTGCAACGTTCAGTTTGCACAATAACATGTGGAAATCCATGTTATCCTTATAAGATTGATG</genome_strand>
        <mrna_strand>TATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGAACTTTGTTATCATGTACTGCACATTACATATGATTTCTCAAACATATATAAAAACTATGTAATACTGGCTAGTGCAGTGCAACGTTCAGTTTGCACAATAACATGTGGAAATCCATGTTATCCTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346276" ref_strand="+" ref_description="SGN-E346276 [cTOF-23-H11]">
      <seq>tatatttgaaggatctgaaagggctggtgtcctcattgaactttgttatcatgtactgcacattacatatgatttctcaaacatatataaaaactatgtaatactggctagtgcagtgcaacgttcagtttgcacaataacatgtggaaatccatgttatccttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="4985" stop="4216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4685" g_stop="4510" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E346276" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4685" e_stop="4510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGAACTTTGTTATCATGTACTGCACATTACATATGATTTCTCAAACATATATAAAAACTATGTAATACTGGCTAGTGCAGTGCAACGTTCAGTTTGCACAATAACATGTGGAAATCCATGTTATCCTTATAAGATTGATG</genome_strand>
        <mrna_strand>TATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGAACTTTGTTATCATGTACTGCACATTACATATGATTTCTCAAACATATATAAAAACTATGTAATACTGGCTAGTGCAGTGCAACGTTCAGTTTGCACAATAACATGTGGAAATCCATGTTATCCTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346869" ref_strand="+" ref_description="SGN-E346869 [cTOF-32-E8]">
      <seq>tatatttgaaggatctgaaagggctggtgtcctcattgaactttgttatcatgtactgcacattacatatgatttctcaaacatatataaaaactatgtaatactggctagtgcagtgcaacgttcagtttgcacaataacatgtggaaatccatgttatccttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="4985" stop="4216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4685" g_stop="4510" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E346869" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4685" e_stop="4510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGAACTTTGTTATCATGTACTGCACATTACATATGATTTCTCAAACATATATAAAAACTATGTAATACTGGCTAGTGCAGTGCAACGTTCAGTTTGCACAATAACATGTGGAAATCCATGTTATCCTTATAAGATTGATG</genome_strand>
        <mrna_strand>TATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGAACTTTGTTATCATGTACTGCACATTACATATGATTTCTCAAACATATATAAAAACTATGTAATACTGGCTAGTGCAGTGCAACGTTCAGTTTGCACAATAACATGTGGAAATCCATGTTATCCTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747220" ref_strand="+" ref_description="SGN-E747220 [GI|12231291]">
      <seq>ataaaataatgagccgacatcctactatcaagtgggctcagatgtctgacaagttgtttattacggtggagttaccagatgccaagaatgtgaagctgaaactggaaccagaaggaaaattcttattctctgcaactgcaggagctgataatgtaccttatgaagtggatcttgatctgtttgataaaattaatgttgatgagagcaaaagtagtactacctctagaagtatcgtgtatctagtgaagaaggcggaagacaagtggtggagcagactggtaaagcaggagggattacgtccggtgtttttgaaagttgattgggacaaatgggttgatgaagatgaagaagacagtaaacctgagccagatatggattttggtgacatggacttctcgaaactcaatatgggagaaggtcctagcaattttgatgttgatgtgcctgagggcgatgatgacagtgacactgaagaaattgaggaagaagagaactctgaacccaaggcagcagtgcctccaagcaccgaacccggagtgaaagcttgacgcattccagtgtttgtaacattgaaaactttttaactgcttgcttgagtttgagtgtggtacattcttctagcaatggttagagctgtagtgcaggaaatgtttgatgatcagttcatgatatttgaaggatctgaaagggctggtgtcctcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="6032" stop="4347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5728" g_stop="5542" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="200" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5541" i_stop="5451" i_length="91">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5450" g_stop="5291" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="360" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5290" i_stop="5211" i_length="80">
            <donor d_prob="0.056" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5210" g_stop="5173" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="398" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5172" i_stop="5078" i_length="95">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5077" g_stop="5026" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="450" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5025" i_stop="4905" i_length="121">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4904" g_stop="4647" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="706" r_length="256" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E747220" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5728" e_stop="5542"/>
          <exon e_start="5450" e_stop="5291"/>
          <exon e_start="5210" e_stop="5173"/>
          <exon e_start="5077" e_stop="5026"/>
          <exon e_start="4904" e_stop="4647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGACATCCTACTATCAAGTGGGCTCAGAGGTCTGACAAGTTGTTTATTACGGTGGAGTTACCAGATGCCAAGAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGATGTAAGTGAATTTCCATCAGTTTGCATCATCTGCAAATTTTTGTGCGAGATAGAAGAACCCATGTTAATTTTACTGTAAAATGATCATTCAGGAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAACGTAAGTATGAAGTCACTAGGGATATCTTCACTGTTGATATTAGCCACTTGGTATATTTGCTAACTATGAACTAATTTCAGCTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCGGTAAGCAGCTCTAAAGATATTAATAAGCGATAGTGTTAATTCGAGTCTATATTGATGCTGATATCTTAACATTCTCCCTTGTATTATTCTCTCAGAAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCCTGAGGGTAAGTCTGATTTGGTTCTGAGCAATTACTGATATTCTTAGCTTCAAATCGATTGCTTGGATTGGAAATTTGTTATTTCCATCCTCATCTAATATATAAATTGACAATGTTTGTGCAATAGGCGATGATGACAGTGACACTGAAGAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTGTGGTACATTCTTCTAGCAATGGTTAGAGCTGTAGTGCAGGAAATGTTTGATGATCAGTTCATGATATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGA</genome_strand>
        <mrna_strand>CCGACATCCTACTATCAAGTGGGCTCAGATGTCTGACAAGTTGTTTATTACGGTGGAGTTACCAGATGCCAAGAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGAT...........................................................................................GAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAAC................................................................................CTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCG...............................................................................................AAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCCTGAGG.........................................................................................................................GCGATGATGACAGTGACACTGAAGAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTGTGGTACATTCTTCTAGCAATGGTTAGAGCTGTAGTGCAGGAAATGTTTGATGATCAGTTCATG--ATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208100" ref_strand="+" ref_description="SGN-E208100 [cLEC-34-B20]">
      <seq>gaatgtgaagctgaaactggaaccagaaggaaaattcttattctctgcaactgcaggagctgataatgtaccttatgaagtggatcttgatctgtttgataaaattaatgttgatgagagcaaaagtagtactacctctagaagtatcgtgtatctagtgaagaaggcggaagacaagtggtggagcagactggtaaagcaggagggattacgtccggtgtttttgaaagttgattgggacaaatgggttgatgaagatgaagaagacagtaaacctgagccagatatggattttggtgacatggacttctcgaaactcaatatgggagaaggtcctagcaattttgatgttgatgtgcctgagggcgatgatgacagtgacactgaagaaattgaggaagaagagaactctgaacccaaggcagcagtgcctccaagcaccgaacccggagtgaaagcttgacgcattccagtgtttgtaacattgaaaactttttaactgcttgcttgagtttgagtgtggtacattcttctagcaatggttagagctgtagtgcacgaaatgtttgatgatcagctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="5956" stop="4386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5656" g_stop="5542" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5541" i_stop="5451" i_length="91">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5450" g_stop="5291" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="275" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5290" i_stop="5211" i_length="80">
            <donor d_prob="0.056" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5210" g_stop="5173" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="313" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5172" i_stop="5078" i_length="95">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5077" g_stop="5026" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="365" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5025" i_stop="4905" i_length="121">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4904" g_stop="4686" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="584" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E208100" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5656" e_stop="5542"/>
          <exon e_start="5450" e_stop="5291"/>
          <exon e_start="5210" e_stop="5173"/>
          <exon e_start="5077" e_stop="5026"/>
          <exon e_start="4904" e_stop="4686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGATGTAAGTGAATTTCCATCAGTTTGCATCATCTGCAAATTTTTGTGCGAGATAGAAGAACCCATGTTAATTTTACTGTAAAATGATCATTCAGGAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAACGTAAGTATGAAGTCACTAGGGATATCTTCACTGTTGATATTAGCCACTTGGTATATTTGCTAACTATGAACTAATTTCAGCTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCGGTAAGCAGCTCTAAAGATATTAATAAGCGATAGTGTTAATTCGAGTCTATATTGATGCTGATATCTTAACATTCTCCCTTGTATTATTCTCTCAGAAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCCTGAGGGTAAGTCTGATTTGGTTCTGAGCAATTACTGATATTCTTAGCTTCAAATCGATTGCTTGGATTGGAAATTTGTTATTTCCATCCTCATCTAATATATAAATTGACAATGTTTGTGCAATAGGCGATGATGACAGTGACACTGAAGAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTGTGGTACATTCTTCTAGCAATGGTTAGAGCTGTAGTGCAGGAAATGTTTGATGATCAGTTCATGA</genome_strand>
        <mrna_strand>GAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGAT...........................................................................................GAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAAC................................................................................CTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCG...............................................................................................AAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCCTGAGG.........................................................................................................................GCGATGATGACAGTGACACTGAAGAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTGTGGTACATTCTTCTAGCAATGGTTAGAGCTGTAGTGCACGAAATGTTTGATGATCAGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287163" ref_strand="+" ref_description="SGN-E287163 [cLES-6-F23]">
      <seq>cccgtctgtgtattataaaataatgagccgacatcctactatcaagtgggctcagaggtctgacaagttgtttattacggtggagttaccagatgccaagaatgtgaagctgaaactggaaccagaaggaaaattcttattctctgcaactgcaggagctgataatgtaccttatgaagtggatcttgatctgtttgataaaattaatgttgatgagagcaaaagtagtactacctctagaagtatcgtgtatctagtgaagaaggcggaagacaaggggtggagcagactggtaaagcaggagggattacgtccggtgtttttgaaagttgattgggacaaatgggttgatgaagatgaagaagacagtaaacctgagccagatatggattttggtgacatggacttctcgaaactcaatatgggagaaggtcctagcaattttgatgttgatgtgcctgagggcgatgatgacagtgacactgaagaaattgaggaagaagagaactctgaacccaaggcagcagtgcctccaagcaccgaacccggagtgaaagcttgacgcattccagtgtttgtaacattgaaaactttttaactgcttgcttgagtttgagtgtggtacattcttctagcaatggttagagctgtagtgcaagaaatgtttgatgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="7263" stop="4394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6963" g_stop="6937" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6936" i_stop="5729" i_length="1208">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5728" g_stop="5542" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="214" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5541" i_stop="5451" i_length="91">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5450" g_stop="5291" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="374" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5290" i_stop="5211" i_length="80">
            <donor d_prob="0.056" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5210" g_stop="5173" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="412" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5172" i_stop="5078" i_length="95">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5077" g_stop="5026" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="464" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5025" i_stop="4905" i_length="121">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4904" g_stop="4694" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="675" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E287163" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6963" e_stop="6937"/>
          <exon e_start="5728" e_stop="5542"/>
          <exon e_start="5450" e_stop="5291"/>
          <exon e_start="5210" e_stop="5173"/>
          <exon e_start="5077" e_stop="5026"/>
          <exon e_start="4904" e_stop="4694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTCTGTGTATTATAAAATAATGAGGTATGTTCTTCAATCTTCTGTTGGCGGAATAATCTATGCTTATTTTCTTCTTTATAGCTTGTGTATATTTTATCTATTGCGTTATGAGTAGAAAACTTGTAGTTGTTACTGTTTGTGAAGTTCTTGATTTTATTGTTGAAATGTTTGAATTGAACCCTAGGATTTTAGAGTTTTGAACCTCGCGTAAACAGAAAATTATACATGATTTTAGTTAATTTATTTTTTACGCATATAATGTGGATGTTGAATCCTTATGGATTCTTCATCAGTGGTGTATTAAGAATAAGATTTGAACTTGGTAACTCGAGGTGAATTTTATATAAAAATGTGAACTCCGTTGGTACCTTCTAGATCCGTCCATGCTCTTCAATCTTCATATTTTAGAACGTTCTAGAACCCGTTAGTGTGCTCGTCCCTTGAGCCCGGGGCGGAGCCAGGTAGGGCCCAGGGGTTTAGTGTTTGAAGTTTTAGTAGTATTTAGTGTGCCAGCCCCTTGATCTAGGGACTGAGCTAGGTAGGGCCAAGAGGGTTCATCTGAAACCAAAACAAAATCATTGATGGAAAATTATATGGGTTGTACATGGTTAAGCTTTTCTTCATATGTTGAACTTTTTTGAACTTTTCATGTGTTTACTTTTTTATATTTTGAAACTCCATCTTAGCGTGTTGTAATTGGTTTGATGTGGTTCTTGATTCAGAACAAATAAATTTTTTCTTCTGTATTTAACTATATAGCAATTGGGACCGGCTGGAACGGGTCATCTTTCAATTACTTGCGTCATGAATATTGTGGGATAATTTACCACAGACAATTATGTGAAAGGACATTGTTAACATATGATGAATTACACTGAAGAAAATAATGATACTTTGTTTGCTCATCTCCTCAAAATTTCTTGATTTGAAATACATTTTGTGATTTCTTGGACTGGCTGTGCCTTTTTGGCTGTGTTGCTCCGACTCTTTAAAAATATTAATGGGTCGGATTCTCCAAAAGTAGTGTATTTTTGGAGAATTCGACACAAGTGTAGAGTAGTTTTGGAGGCCGACACAAGCGTAGGATTGAAAGTGTAGAGTCGGCGCAACTTAGGATTCTGGAGTGTCTATCCACATCCTGCTAATTGTCTCTTCCTCGTTTTGCCTTGAATAGTGGTTGTGATTTTTATGATTTAATTGGTATCAATTTGTTTTCTGCTTCTCTATCTCAGCCGACATCCTACTATCAAGTGGGCTCAGAGGTCTGACAAGTTGTTTATTACGGTGGAGTTACCAGATGCCAAGAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGATGTAAGTGAATTTCCATCAGTTTGCATCATCTGCAAATTTTTGTGCGAGATAGAAGAACCCATGTTAATTTTACTGTAAAATGATCATTCAGGAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAACGTAAGTATGAAGTCACTAGGGATATCTTCACTGTTGATATTAGCCACTTGGTATATTTGCTAACTATGAACTAATTTCAGCTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCGGTAAGCAGCTCTAAAGATATTAATAAGCGATAGTGTTAATTCGAGTCTATATTGATGCTGATATCTTAACATTCTCCCTTGTATTATTCTCTCAGAAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCCTGAGGGTAAGTCTGATTTGGTTCTGAGCAATTACTGATATTCTTAGCTTCAAATCGATTGCTTGGATTGGAAATTTGTTATTTCCATCCTCATCTAATATATAAATTGACAATGTTTGTGCAATAGGCGATGATGACAGTGACACTGAAGAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTGTGGTACATTCTTCTAGCAATGGTTAGAGCTGTAGTGCAGGAAATGTTTGATGATCA</genome_strand>
        <mrna_strand>CCCGTCTGTGTATTATAAAATAATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACATCCTACTATCAAGTGGGCTCAGAGGTCTGACAAGTTGTTTATTACGGTGGAGTTACCAGATGCCAAGAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGAT...........................................................................................GAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGGGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAAC................................................................................CTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCG...............................................................................................AAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCCTGAGG.........................................................................................................................GCGATGATGACAGTGACACTGAAGAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTGTGGTACATTCTTCTAGCAATGGTTAGAGCTGTAGTGCAAGAAATGTTTGATGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372090" ref_strand="+" ref_description="SGN-E372090 [TUS-30-L22]">
      <seq>gccgtctgtgtattatataataatgagccgacattctactatcaagtgggctcagaggtctgacgagttgtttattactgtggagttaccagatgccaagaatgtgaagctgaaactggaaccataaggaaaattcttattctctgcaactgcaggagctgataatgtaccttatgaagtggatcttgatctgtttgatgaaattaatgttgatgagagcaaaagtagtactacctctagaagtatcgtgtatctagtgaagaaggcggaagacaagtggtggagcagactggtaaagcaggagggattacgtccggtgtttttgaaagttgattgggacacatgggttgatgaatatgaagaagacagtctactctgagccagatatggattttggtgacatggacttctcgaaactcaatatgggagaaggtcctagcacttttgatgttgatgtgcctgagggcgatgatgacagtgacactgagcaaattgaggaagaagagaactctgaacccaaggcagcactgtctacaagcaccgaacccggagtgaaagcttgacgcattccagtgtttgtaacattgaaaactttataactgcttgcttgattttgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="7262" stop="4450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6963" g_stop="6937" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6936" i_stop="5729" i_length="1208">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5728" g_stop="5542" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="214" r_length="187" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5541" i_stop="5451" i_length="91">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.671" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5450" g_stop="5291" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="375" r_length="161" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5290" i_stop="5211" i_length="80">
            <donor d_prob="0.056" d_score="0.88"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5210" g_stop="5173" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="413" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5172" i_stop="5078" i_length="95">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5077" g_stop="5026" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="465" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5025" i_stop="4905" i_length="121">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4904" g_stop="4750" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="620" r_length="155" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E372090" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6963" e_stop="6937"/>
          <exon e_start="5728" e_stop="5542"/>
          <exon e_start="5450" e_stop="5291"/>
          <exon e_start="5210" e_stop="5173"/>
          <exon e_start="5077" e_stop="5026"/>
          <exon e_start="4904" e_stop="4750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTCTGTGTATTATAAAATAATGAGGTATGTTCTTCAATCTTCTGTTGGCGGAATAATCTATGCTTATTTTCTTCTTTATAGCTTGTGTATATTTTATCTATTGCGTTATGAGTAGAAAACTTGTAGTTGTTACTGTTTGTGAAGTTCTTGATTTTATTGTTGAAATGTTTGAATTGAACCCTAGGATTTTAGAGTTTTGAACCTCGCGTAAACAGAAAATTATACATGATTTTAGTTAATTTATTTTTTACGCATATAATGTGGATGTTGAATCCTTATGGATTCTTCATCAGTGGTGTATTAAGAATAAGATTTGAACTTGGTAACTCGAGGTGAATTTTATATAAAAATGTGAACTCCGTTGGTACCTTCTAGATCCGTCCATGCTCTTCAATCTTCATATTTTAGAACGTTCTAGAACCCGTTAGTGTGCTCGTCCCTTGAGCCCGGGGCGGAGCCAGGTAGGGCCCAGGGGTTTAGTGTTTGAAGTTTTAGTAGTATTTAGTGTGCCAGCCCCTTGATCTAGGGACTGAGCTAGGTAGGGCCAAGAGGGTTCATCTGAAACCAAAACAAAATCATTGATGGAAAATTATATGGGTTGTACATGGTTAAGCTTTTCTTCATATGTTGAACTTTTTTGAACTTTTCATGTGTTTACTTTTTTATATTTTGAAACTCCATCTTAGCGTGTTGTAATTGGTTTGATGTGGTTCTTGATTCAGAACAAATAAATTTTTTCTTCTGTATTTAACTATATAGCAATTGGGACCGGCTGGAACGGGTCATCTTTCAATTACTTGCGTCATGAATATTGTGGGATAATTTACCACAGACAATTATGTGAAAGGACATTGTTAACATATGATGAATTACACTGAAGAAAATAATGATACTTTGTTTGCTCATCTCCTCAAAATTTCTTGATTTGAAATACATTTTGTGATTTCTTGGACTGGCTGTGCCTTTTTGGCTGTGTTGCTCCGACTCTTTAAAAATATTAATGGGTCGGATTCTCCAAAAGTAGTGTATTTTTGGAGAATTCGACACAAGTGTAGAGTAGTTTTGGAGGCCGACACAAGCGTAGGATTGAAAGTGTAGAGTCGGCGCAACTTAGGATTCTGGAGTGTCTATCCACATCCTGCTAATTGTCTCTTCCTCGTTTTGCCTTGAATAGTGGTTGTGATTTTTATGATTTAATTGGTATCAATTTGTTTTCTGCTTCTCTATCTCAGCCGACATCCTACTATCAAGTGGGCTCAGAGGTCTGACAAGTTGTTTATTACGGTGGAGTTACCAGATGCCAAGAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGATGTAAGTGAATTTCCATCAGTTTGCATCATCTGCAAATTTTTGTGCGAGATAGAAGAACCCATGTTAATTTTACTGTAAAATGATCATTCAGGAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAAC-GTAAGTATGAAGTCACTAGGGATATCTTCACTGTTGATATTAGCCACTTGGTATATTTGCTAACTATGAACTAATTTCAGCTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCGGTAAGCAGCTCTAAAGATATTAATAAGCGATAGTGTTAATTCGAGTCTATATTGATGCTGATATCTTAACATTCTCCCTTGTATTATTCTCTCAGAAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCCTGAGGGTAAGTCTGATTTGGTTCTGAGCAATTACTGATATTCTTAGCTTCAAATCGATTGCTTGGATTGGAAATTTGTTATTTCCATCCTCATCTAATATATAAATTGACAATGTTTGTGCAATAGGCGATGATGACAGTGACACTGAAGAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTG</genome_strand>
        <mrna_strand>GCCGTCTGTGTATTATATAATAATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACATTCTACTATCAAGTGGGCTCAGAGGTCTGACGAGTTGTTTATTACTGTGGAGTTACCAGATGCCAAGAATGTGAAGCTGAAACTGGAACCATAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATGAAATTAATGTTGAT...........................................................................................GAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACACATGGGTTGATGAATATGAAGAAGACAGTCTACT................................................................................CTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCG...............................................................................................AAACTCAATATGGGAGAAGGTCCTAGCACTTTTGATGTTGATGTGCCTGAGG.........................................................................................................................GCGATGATGACAGTGACACTGAGCAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCACTGTCTACAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTATAACTGCTTGCTTGATTTTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332890" ref_strand="+" ref_description="SGN-E332890 [cTOD-19-A6]">
      <seq>aattttcccgtctgtgtattataaaataatgagccgacatcctactatcaagtgggctcaaaggtctgacaagttgtttattacagcggagttaccagatgccaagaatgtgaagctgaaactggaaccagaaggaaaattcttattctctgcaactgcaggagctgataatgtaccttatgaagtggatcttgatctgtttgataaaattaatgttgatgagagcaaaagtagtactacctctagaagtatcgtgtatctattgaagaaagcggaagacaagtggtggagcagactggtaaagcaggagggattacgtcccgtgtttttgaaacttgattgggacaaatgggttgatgcagatgaataatacagtaaacctgagccagatatggattttggtgacatggacttctctaaactcaatatgggagaaggtcctagcaattttgatgttgatgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="7269" stop="4731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6969" g_stop="6937" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6936" i_stop="5729" i_length="1208">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5728" g_stop="5542" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="220" r_length="187" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5541" i_stop="5451" i_length="91">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.671" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5450" g_stop="5291" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="380" r_length="160" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5290" i_stop="5211" i_length="80">
            <donor d_prob="0.056" d_score="0.92"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5210" g_stop="5173" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="418" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5172" i_stop="5078" i_length="95">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5077" g_stop="5031" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="465" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E332890" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6969" e_stop="6937"/>
          <exon e_start="5728" e_stop="5542"/>
          <exon e_start="5450" e_stop="5291"/>
          <exon e_start="5210" e_stop="5173"/>
          <exon e_start="5077" e_stop="5031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCCCGTCTGTGTATTATAAAATAATGAGGTATGTTCTTCAATCTTCTGTTGGCGGAATAATCTATGCTTATTTTCTTCTTTATAGCTTGTGTATATTTTATCTATTGCGTTATGAGTAGAAAACTTGTAGTTGTTACTGTTTGTGAAGTTCTTGATTTTATTGTTGAAATGTTTGAATTGAACCCTAGGATTTTAGAGTTTTGAACCTCGCGTAAACAGAAAATTATACATGATTTTAGTTAATTTATTTTTTACGCATATAATGTGGATGTTGAATCCTTATGGATTCTTCATCAGTGGTGTATTAAGAATAAGATTTGAACTTGGTAACTCGAGGTGAATTTTATATAAAAATGTGAACTCCGTTGGTACCTTCTAGATCCGTCCATGCTCTTCAATCTTCATATTTTAGAACGTTCTAGAACCCGTTAGTGTGCTCGTCCCTTGAGCCCGGGGCGGAGCCAGGTAGGGCCCAGGGGTTTAGTGTTTGAAGTTTTAGTAGTATTTAGTGTGCCAGCCCCTTGATCTAGGGACTGAGCTAGGTAGGGCCAAGAGGGTTCATCTGAAACCAAAACAAAATCATTGATGGAAAATTATATGGGTTGTACATGGTTAAGCTTTTCTTCATATGTTGAACTTTTTTGAACTTTTCATGTGTTTACTTTTTTATATTTTGAAACTCCATCTTAGCGTGTTGTAATTGGTTTGATGTGGTTCTTGATTCAGAACAAATAAATTTTTTCTTCTGTATTTAACTATATAGCAATTGGGACCGGCTGGAACGGGTCATCTTTCAATTACTTGCGTCATGAATATTGTGGGATAATTTACCACAGACAATTATGTGAAAGGACATTGTTAACATATGATGAATTACACTGAAGAAAATAATGATACTTTGTTTGCTCATCTCCTCAAAATTTCTTGATTTGAAATACATTTTGTGATTTCTTGGACTGGCTGTGCCTTTTTGGCTGTGTTGCTCCGACTCTTTAAAAATATTAATGGGTCGGATTCTCCAAAAGTAGTGTATTTTTGGAGAATTCGACACAAGTGTAGAGTAGTTTTGGAGGCCGACACAAGCGTAGGATTGAAAGTGTAGAGTCGGCGCAACTTAGGATTCTGGAGTGTCTATCCACATCCTGCTAATTGTCTCTTCCTCGTTTTGCCTTGAATAGTGGTTGTGATTTTTATGATTTAATTGGTATCAATTTGTTTTCTGCTTCTCTATCTCAGCCGACATCCTACTATCAAGTGGGCTCAGAGGTCTGACAAGTTGTTTATTACGGTGGAGTTACCAGATGCCAAGAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGATGTAAGTGAATTTCCATCAGTTTGCATCATCTGCAAATTTTTGTGCGAGATAGAAGAACCCATGTTAATTTTACTGTAAAATGATCATTCAGGAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAACGTAAGTATGAAGTCACTAGGGATATCTTCACTGTTGATATTAGCCACTTGGTATATTTGCTAACTATGAACTAATTTCAGCTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCGGTAAGCAGCTCTAAAGATATTAATAAGCGATAGTGTTAATTCGAGTCTATATTGATGCTGATATCTTAACATTCTCCCTTGTATTATTCTCTCAGAAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCC</genome_strand>
        <mrna_strand>AATTTTCCCGTCTGTGTATTATAAAATAATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACATCCTACTATCAAGTGGGCTCAAAGGTCTGACAAGTTGTTTATTACAGCGGAGTTACCAGATGCCAAGAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGAT...........................................................................................GAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTATTGAAGAAAGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCCGTGTTTTTGAAACTTGATTGGGACAAATGGGTTGATGCAGATGAATAATACAGTAAAC................................................................................CTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCT...............................................................................................AAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248429" ref_strand="+" ref_description="SGN-E248429 [cLEF-59-B1]">
      <seq>gttccgaaaccccacactncatgcccatgtgattcgagtgtgggtttgctgcagatgtcctgttgcgtacaactttactggatgcgtactcgaaatgtagtgatttggattatgcatacaaggtgtttgatgaaatgggtgttagagatattgcgatttggaatgcgttaattgctgggttagctcaagggaatcgacccactgaggctttgttgcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="9760" stop="10581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10060" g_stop="10281" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E248429" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10060" e_stop="10281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCGAAACCCCACAACTTCATACCCATGTGATTCGA-TTTGGGTTTGATGCAGATGTGTTGTTGCGGACTACTTTACTGGATGCGTACTCGAAATCTGGTGATTTGGATTATGCATACAAGGTGTTTGATGAAATGGGTGTTAGAGATATTGCGAGTTGGAATGCATTAATTGCTGGGTTAGCTCAAGGGAATCGACCCACGGAAGCTTTGTTGCTTTTTA</genome_strand>
        <mrna_strand>GTTCCGAAACCCCAC-ACTNCATGCCCATGTGATTCGAGTGTGGGTTTGCTGCAGATGTCCTGTTGCGTACAACTTTACTGGATGCGTACTCGAAATGTAGTGATTTGGATTATGCATACAAGGTGTTTGATGAAATGGGTGTTAGAGATATTGCGATTTGGAATGCGTTAATTGCTGGGTTAGCTCAAGGGAATCGACCCACTGAGGCTTTGTTGCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547073" ref_strand="+" ref_description="SGN-E547073 [TUS-70-M7](-)">
      <seq>gtcaaaaacagttgatgatcattgtgacttttggctgcctggtaatatcttccatttgttttccaaaataacactgcttaccatgacattcaccatcagcttcaaggcacaaagttcaattattctcagccattcttttccatttgggacaaacttcttggaacatacaggccatacagacttgtaaaaaggcctgagggtggtttcgaggcacaactgatgaaagattagttggttttgttcattagtctctgtatgaaatcaacatgtcttttgtagggatagctaccaagttgaggttgttcactctagcagttgccttggaaggtccacattcatcaagacttgaaagtgtgctgcagaattagaaatgttcattcttttcttttcagttgaccctgtttattcgtaatttttgtctaacctcttgacgatttgtaagcctattgtttctgagttcttactttgtgcagtatacattttcaactattgcaacttgctcagactttagcaggttgattttgtattgcctttcaagagttgtgagtctcgagaaatcaagatcatgtaattacaattgttcaaactatgtagtgtaaaatttcatggtcattgaagttatttcaatcacctttgtgctattttatttgaagcttttgtgatacactttataaagacttgtgaagttttatcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="12982" stop="11679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12682" g_stop="12018" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="708"/>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E547073" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12682" e_stop="12018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTC-AAAACAGTTGATGATCATTGTGGACTTTGGCTGCCTGGTAATATCTTCCATTTGTTTTTCCATAATAACACTGCTTACCATGACATTCACCATCAGCTTCAAGGCACAAAGTTCAATTATTCTCAGCCATTCTTTTCCATTTGGGACAAACTTCTTGGAACATACAGGCCATACAGACTTGTAAAAAGGCCTGAGGGTGGTTTCGAGGCACAACTGATGAAAGATTAGTTGGTTTTGATCATTAGTCTCTGTATGAAATCAACATGTCTTTTGTAGGGATAGCTACCAAGTTGAGGTTGTTCACTCTAGCAGTTGCCTTGGAAGGTCCACATTCATCAAGACTTGAAAGTGTGCTGCAGAATTAGAAATGTTCATTCTTTTCTTTTCAGTTGACCCTGTTTATTCGTAATTTTTGTCTAACCTCTTGACGATTTGTAAGCCTATTGTTTCTGAGTTCTTACTTTGTGCAGTATACATTTTCAACTATTGCAACTTGCTCAGACTTTAGCAGGTTGATTTTGTATTGCCTTTCAAGAGTTGTGAGTCGAGAGAAATCAAGATCATGTAATTACAATTGTTCAAACTATGTAGTGTAAAATTTCATGGTCATTGAAGTTATTTCAATCACCCTTGTGCTATTTTGTTTGAAGCCTTTGTGATAC</genome_strand>
        <mrna_strand>GTCAAAAACAGTTGATGATCATTGTGACTTTTGGCTGCCTGGTAATATCTTCCATTTG-TTTTCCAAAATAACACTGCTTACCATGACATTCACCATCAGCTTCAAGGCACAAAGTTCAATTATTCTCAGCCATTCTTTTCCATTTGGGACAAACTTCTTGGAACATACAGGCCATACAGACTTGTAAAAAGGCCTGAGGGTGGTTTCGAGGCACAACTGATGAAAGATTAGTTGGTTTTGTTCATTAGTCTCTGTATGAAATCAACATGTCTTTTGTAGGGATAGCTACCAAGTTGAGGTTGTTCACTCTAGCAGTTGCCTTGGAAGGTCCACATTCATCAAGACTTGAAAGTGTGCTGCAGAATTAGAAATGTTCATTCTTTTCTTTTCAGTTGACCCTGTTTATTCGTAATTTTTGTCTAACCTCTTGACGATTTGTAAGCCTATTGTTTCTGAGTTCTTACTTTGTGCAGTATACATTTTCAACTATTGCAACTTGCTCAGACTTTAGCAGGTTGATTTTGTATTGCCTTTCAAGAGTTGTGAGTCTCGAGAAATCAAGATCATGTAATTACAATTGTTCAAACTATGTAGTGTAAAATTTCATGGTCATTGAAGTTATTTCAATCACCTTTGTGCTATTTTATTTGAAGCTTTTGTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615265" ref_strand="+" ref_description="SGN-E615265 [65062]">
      <seq>ctctatgaaatcaacatgtcttttgtagggatagctaccagttgaggttgttcactctagcagctgccttggaaagtctacgttcatcaagacttggaagtatgctgcagaaattagaaatgttcattcttttcttttcagttgaccctgtttattcgtaatttttgtctaacctcttgacgatttgtaagcctattgtttctgaattcttactttgtgcagtatactttttcaacaattggaacttgctcagactttagcaggttgattttgtattgcctttcaagagttgtgagtcgcgagaaatcaagatcatgtaattacatttgttcaaactatgtagtgtaaaatttcatggtcattgaagttatttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="12731" stop="11756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12431" g_stop="12057" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="385"/>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E615265" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12431" e_stop="12057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATGAAATCAACATGTCTTTTGTAGGGATAGCTACCAAGTTGAGGTTGTTCACTCTAGCAGTTGCCTTGGAAGGTCCACATTCATCAAGACTTGAAAGTGTGCTGCAG-AATTAGAAATGTTCATTCTTTTCTTTTCAGTTGACCCTGTTTATTCGTAATTTTTGTCTAACCTCTTGACGATTTGTAAGCCTATTGTTTCTGAGTTCTTACTTTGTGCAGTATACATTTTCAACTATTGCAACTTGCTCAGACTTTAGCAGGTTGATTTTGTATTGCCTTTCAAGAGTTGTGAGTCGAGAGAAATCAAGATCATGTAATTACAATTGTTCAAACTATGTAGTGTAAAATTTCATGGTCATTGAAGTTATTTCA</genome_strand>
        <mrna_strand>CTCTATGAAATCAACATGTCTTTTGTAGGGATAGCTACC-AGTTGAGGTTGTTCACTCTAGCAGCTGCCTTGGAAAGTCTACGTTCATCAAGACTTGGAAGTATGCTGCAGAAATTAGAAATGTTCATTCTTTTCTTTTCAGTTGACCCTGTTTATTCGTAATTTTTGTCTAACCTCTTGACGATTTGTAAGCCTATTGTTTCTGAATTCTTACTTTGTGCAGTATACTTTTTCAACAATTGGAACTTGCTCAGACTTTAGCAGGTTGATTTTGTATTGCCTTTCAAGAGTTGTGAGTCGCGAGAAATCAAGATCATGTAATTACATTTGTTCAAACTATGTAGTGTAAAATTTCATGGTCATTGAAGTTATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425904" ref_strand="+" ref_description="SGN-E425904 [STM-45-B22]">
      <seq>cttctttatttgccaagtaagaattcagattccctaggcttacaaatcgtcaagaggttagacaaaaattacgaataaacagggtcaactgaaaagaaaagaatgaacatttctaatttctgcagcatacttccaagtcttgatgaacgtagactttccaaggcagctgctagagtgaacaacctcaactggtagctatccctacaaaagacatgttgatttcatagagactgatgatcaaaaccaactaatctttcatcagtcgggcctcgaaaccaccctcaggcctttttacaagtctgtatggcctgtatgttccaagaagtttgtcccaaatggaaaagaatggctgagaataattgaattttgtgccttgaagctgatgatgaatgtcatggtaagcagtgttattttggaaaaacaaatggaagatattaccaggcaaccaaagtccacaatgatcatcaactgttttgaccacagcaaagcagaaaaaaattacagcagtacgtgcagtcattccagcaacaagaaacgcaagaacacccccaaaagtatccaggaggagaccttcaagtgggtggttataaagggcaccaatcgcgtaaggcacaaccaaccgatgatgctgggagtgaatatggcggtataaaaacttgttctgatgcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="11911" stop="13176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12220" g_stop="12876" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="672" r_length="655" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E425904" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12220" e_stop="12876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAACTCAGAAACAATAGGCTTACAAATCGTCAAGAGGTTAGACAAAAATTACGAATAAACAGGGTCAACTGAAAAGAAAAGAATGAACATTTCTAA-TTCTGCAGCACACTTTCAAGTCTTGATGAATGTGGACCTTCCAAGGCAACTGCTAGAGTGAACAACCTCAACTTGGTAGCTATCCCTACAAAAGACATGTTGATTTCATACAGAGACTAATGATCAAAACCAACTAATCTTTCATCAGTTGTGCCTCGAAACCACCCTCAGGCCTTTTTACAAGTCTGTATGGCCTGTATGTTCCAAGAAGTTTGTCCCAAATGGAAAAGAATGGCTGAGAATAATTGAACTTTGTGCCTTGAAGCTGATGGTGAATGTCATGGTAAGCAGTGTTATTATGGAAAAACAAATGGAAGATATTACCAGGCAGCCAAAGTCCACAATGATCATCAACTGTTTTGACCACAGCAAAACAGAAAAAGATTACAGCAGTACGTGCAGTCATTCCAGCAACAAGAAACGAAAGAGCACCACCGAAAGTATCCAGGAGGAGACCTTCAAGTGGGTGGTTATAAAGGGCACCAATTGCGTAAGGCACGACCAACCGATGATGCTGGGAGTGAATATGGCGGTATAAGAACTTGTTCTGATGCATGT</genome_strand>
        <mrna_strand>TAAGAATTCAGATTCCCTAGGCTTACAAATCGTCAAGAGGTTAGACAAAAATTACGAATAAACAGGGTCAACTGAAAAGAAAAGAATGAACATTTCTAATTTCTGCAGCATACTTCCAAGTCTTGATGAACGTAGACTTTCCAAGGCAGCTGCTAGAGTGAACAACCTCAAC-TGGTAGCTATCCCTACAAAAGACATGTTGATTTCAT--AGAGACTGATGATCAAAACCAACTAATCTTTCATCAGTCGGGCCTCGAAACCACCCTCAGGCCTTTTTACAAGTCTGTATGGCCTGTATGTTCCAAGAAGTTTGTCCCAAATGGAAAAGAATGGCTGAGAATAATTGAATTTTGTGCCTTGAAGCTGATGATGAATGTCATGGTAAGCAGTGTTATTTTGGAAAAACAAATGGAAGATATTACCAGGCAACCAAAGTCCACAATGATCATCAACTGTTTTGACCACAGCAAAGCAGAAAAAAATTACAGCAGTACGTGCAGTCATTCCAGCAACAAGAAACGCAAGAACACCCCCAAAAGTATCCAGGAGGAGACCTTCAAGTGGGTGGTTATAAAGGGCACCAATCGCGTAAGGCACAACCAACCGATGATGCTGGGAGTGAATATGGCGGTATAAAAACTTGTTCTGATGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547074" ref_strand="+" ref_description="SGN-E547074 [TUS-70-M7]">
      <seq>catccctttcccttttccaacgaatctctcagaatcataaattcaaaaaaaaaagttaggccgaatctcacaactgtcagcactatcattgtattaaccccagctcaactctcatgttaatacatacatttacatacatatgccccagatctgttctcatatttccaataattgtttctctaagatttgccaaaatcaccaccagtaatttctatgctttgttggggctaaagatttgatcttttgttcaagaacttatttgggatttcattttcttggattcttgtttcagggtgtatgttgtaatgtgcttgttgtatgtagatcttgagctgggaatttcataatttagagtgttggattgagggaaaagggataaggggaaaggggttaactttttttttttgaaaagggggcttaaaaatggtgttctgggagggttatgtgagtgatgaagtgatggggacatttgccccaatagtggtgtattggttgtatgcagggttctatcagctattgcctcccatggataaatatcgtcttcatacaaggaaagaggaaaatgccaagaacttagttccactggcttctgttgttaaaggggttcttcttcagcagttttttcaggcaactgttgcccacttgctctttttgttaacttgtaaggtaactacatcagaaactgtagtccagccctcaattcctgttcagattgtgcagatcattattgcgatgctggtcatggacacatggcagtactttgtgcatcgctacatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="19518" stop="12570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19218" g_stop="18562" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18561" i_stop="12995" i_length="5567">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12994" g_stop="12870" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="779" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E547074" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19218" e_stop="18562"/>
          <exon e_start="12994" e_stop="12870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCTTTTCCTTTTCCAACGAATCTCTCAGAATCACAAATTCAAAAAAAAAAAAAAAAGTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCAATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTCTTGTTTCA------ATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAA-GGGAAAGGGGGTAACTTTTTTTTTTTTTTTGAAAAGGGGGCTTAAAAATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTGGTGTATTGGTTGTATGCAGGGTTCTATCAGCTATTGCCTCCCATGGATAAATATCGTCTTCATACTAGGAAAGAGGAAAATGCCAAGAACTTAGTTCCACTGGCTTCTGTTGTTAAAGGGGTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTGGTAATTCCTCAGCTATTTTTGGTTCTGGTTCCATAAACTGTGTCTGTCTGTCTTGGTTGGAGTTCTTTGGATTGATTAGTTAACTGTGTGACTGGGTGGATAAGGCCTGTAGAAATGGATAAGTAGAGTTGCTCCTTTGATGGCATGTAGGTCACACGTTTGAGGCATCGATACAAACCTTTAGTAGAAATGCAAAGAGAGGGCTGTGTACGACATACACCTTCCTCCTACGAACACTAGTTGGGAGCACTTAATGCATTGGCTAAACTGATTTATAACAAAGTGGTCAGATTATATTGCTGTCAGACTTCCAATTATGACCAGCTTGTTGTTTGCAGTTACTTACTTAAGAGGGTAATGAACTATTGCATGACTTCTCATGTAGTGTGCTCTAATTAGTGCACTGGTTATTTGATTTTGATTCAATACTCTTCTATTTAATGTGCCAATCAGCCTTAGCTTATGCAGTGATTACTTTTATCGACAACATTGACCAGCGACAAACGTTCTCCCCTCTCCCCTTCATATATAATATATAGCGTTGAAATGCTAATCACATCTCTGTGTTTGGCGTTGTCCTTCATCGAATATTGTTCCTCATGAAGTTGATAGAAAAGGAGTCAGAGCGGCAGAAAGGAAGTACAGAAAAATTCATCTATAGCTTAGTAACCATTATGTCATATACTCGTGAGAGAATGAAGCACTTAAGATGATGAAAGTATTTTCTGAACAAGTTAATGAATGCAGGAATGGTGCCTTTCAACCTTTTTCTTTAGAAGCATTCATAAGTTCGTTCTATACAGACGGTCCAATAGCGGACATCCTCAAATGTGCTCCCCCCTCCAATACACATAACAGTATAAGTCTTTGATCGTTCAATGGATTGACTACATTGCCATATTTTATTTTGTCCTTTTAAGAACATTTTCTTCATGAAATTGATAGAAGTGGACAGAGAGAGGGAAGAAGTCTAGAATATAATATCTGAAGCATGGCAAAATTGATCATCATGTTATATTCTCCCAGGTAAATGTAGTATCTTTTTAACAAGTAGATGAACGAAGGGTTGGACAAGTTTCAATTTTTTGTGTGTTGCAAGAAGCATAAGAAGGTTAATAAAAAATGTTAAATTAGATTATATGCATTTTGTAGATGCCGTTGAATCAATTTGTGTATTTGACCTAACCTATAAGCACGAGGAAGTGAAATGAAGATCTAAGCAGCTTTTCTAGTCTTACTGAAAAGCATGCTTCATATGTTCCCCATTTTCACTTCAAGTACGCCAATTTAGGGACACATCAGAAATGAAAGAGCTTCAAGGAGACACCAAATGGTGACTTCTCATCTCGCATCACATATTGGAATTTTGAAGGAAACTATCTGAAAGATCAGTTTCTCCCATTATGGTCAAAGTAGGAAATATGCTATTTGGATAACTAGCATTCTACCCTTCGGGGTGACCCAGTGGTTTGGGCTTGGGACTTCCATGTTGGAGGTCTCCATATCGAAACCCCTTGCAAGCGAAAGCAAGGGGTTTTCCTTCTGGGTCGCGCTCGTCGTACCGGGCTTGCCAGTGCAGGTTAACTCTCCTACGTGGTTTGCAAGCTCTTGCATAGGAGCGGGGGTTTCTCCTTGTGCGCACTCTAAGGGTAGTGGATGTTGGTTCCCCTAGTTATTTAAAAAAAAAAACTACCATTCTGTTGTATCTTCCAAATCAGGGTGTTGTATTAGTGGCCATGCCAGATTTACTTGTACAACCTGGACCTTGCATGTTGCTTCTTTTTTCTTTTATACATTGCTATGTTTGTTGAACTTGAACTTCTAGAATAAACTTGCAGAATTTGTAATTTCAAAAGGCTTTGGGGACACTTCCTATGATGTAGATAGTTCAAGTCTTGCTATATTTTAGTCACCATTGAGCTGATCAACCTAAAAATAAACGTGGTACCAATACTGTTTCCCGGACGACTATTATAACTACATGCTTATCCAATGGGTAGCTACTCACCTGGATTTCCTCGACGTAACCATTGGATAACACCAATATAATTTAGCCATGTGGACGAACTCTTCCATACCCTCTCCCTCTGTTAGGCCACAACTTTCATATTGGTCTTATAGCATCTGCAGACCTATGGTACTGAAGAGAACACATGTTTCGGAAGTTTTTTGCTCCAAAAAAGTGATATCTTATCTATGGTGAAATTGCTGTTTGCTCTTGTAATTGTGTTGGGATAATGAATGAAGAACCTGTGACCACTTCTTCCCACAGACATGTATCAGTGTGAGCGCTAGTCTATACCAGCGGATTCTATCCATAGGTCATATATATGCTAAGCAACATAGACCCATAAATGAGCCAAAGGAAGAATGAACTTTAGAGTCATCCTGATGGGTTTATCAACTAACTAAAATTACCCGAGTCTCTGGTTTAGCGGTCAATGAAGTGGGTGAAAATCACGAGAGACCAGGGTTCAAAATCCTAACTCAGGCAAAAAAACTCTAGATGGTTTCTTTTCATTTGTCTAAGCCTGTTGGACACAATTACTAGGTGCCTTTGTTGGTGAGAGGCGGTTGATACCTGGTGAAATAGTCAAATGGTGCAAGCTGGCTCGAGCACCACAATTATCATTTAGTAAATCTAGTAAAAATTATTTTCTCCCCCTTCAAAGATGGCTTGCACATTTATGGGACTGTCTTTAATATGTATTTTTTCCTTTTTGTTTCTTCAGCTTTAGAATTCCCCATGCTTACAGTTTGCTTGAGTATTTCTTGAATTTGGATAATATACCTTGAACACATTTCGGAACAGATCAAACAATATGTGTGGTCATCTCTCTTCTTTATATTATACATCCAGAAACCTACAAATCCTCCTGCCTTCTTTTTATCCGAATTAATCGTTTTAATATGTTTATCGAATTTTTTTGCTCTGGGGTTCCATTAGCTGCTAGGGTCACATGATAAAGGTGATCTTTTGCCTTCTAGTGAAGTTTTGCAGCTGTCAAATCTCTTCACCCACGACCTATCAGTAAAAATGTATTAACCTAAACTTTTTATGGTTGAGACACGTGGAATGATCTATGCCTCCAATGTAGGGTTTTGGGTTGTTAATGCAACATGAAATTTTTTCTGGTACAGTTGTATTTGTTCTGACCTACAGATAGTTTCGAAGATGCCATCTATATTACTTGGGTCTCTATGAGCAATTATCATGGATAGATCAAGAGGGAATTCTGTTGCAAATGGTTAATGATCTAACTGGAACTAATAAACGGAGTAGGTCTTGACATTCATACTTACATATTGGAGTTTAGAGATTTCTACAAATGCTTATTTTGCTCATCGACTGTCAGGGAAACAAATTTTTGTCTCATAATCTGATATTGCGAGTTTGATGAGTTGTGTTCGCTTCTCTTCTTTTTACCTTTTTCATTCTTTTTTGTTTATGTATTGGGTAGTAAGAATTGAAATTCAAATGATACCTGGTGACTTTAAGACTAGGAGGTTACCTCCCAAGCTATTGAGGCTATTGGACTGTTTGCGATCATCACATCTTTTACCATGTTTAGGTTGACCTCAGGTCAAATTACCTCATTCATCTTATCCTCTTTCACTGTTGATCTCCAGGGACACAATATTTAATGTGGATACAGTCCAAACAACCACAAGTCTCACCCTTGCTTCAAATCCATCAGCTAACACATCTTTTGGTCCAGTGACAATTCCTACCACTTTTCTACCACCAAACATGTTGTGAATTTCTGAGTCAAATGACCAATTTGTAAAACTTAATTGATATAACATCAGAACATCAAGACCAACATCTTGTCTCTAATATACTTGTTTGCCTAAATCCATGACCTGAAGGCAAAAGTGCCTGTCTGGTTTCTCCAACAATATTCCTTAGTGTGGAAATTTGTATAGATGTTTTAGAACCACTGCAGTTAGCTCAATCAGAACAGTGATCAAGCAACAAATGCTGGAAACTAATGTCGTTAACTTTAAGGCTAATTTCAGGTAGGCAATCACTAGGCCGAACTGTTCTGTTATCACTATTCATCTTGTCAAGTTTCCCTAGTGCAACTGGCATTGATCAACAGGGGCTATTCAGAAAGGAGTAAGTGGAGTAGAGATTGTGGCTTTTTATAGTTTAATAGGCTACAGATTGGGAAATTAATAGATGGGGAAGGTAGGTGTGGTAGTAGCAACAGGAAATTGGGAGACAAGTAGATGGGAAAATTGGTAGGGCAAAGGGGAGTAAGGGGACCACAGGTGTGAGTTGAGGTCAGAATGTGAAATTACAAACTGGTCAATCAGGGTGGTAGCTGAGGTTGGATTTTGACAGAGTACTTCACTTTTTTTTTTGGAAACTGGTCAATGTGTATTACTCAACATTGAGGACATGCTGCAGACCATCAAAAAGTGTTGAAAGTTAAAAAAAAATAAAAAATACAAAAGAAGATACTTAGATCTTAATAGATCTACAAAATGATCAATATTCTCTAAACCTACTTCTTTACAACAAAAGTAGAATGATATTATACAATTCGATTTAACTTTCTGAATGGAATTGGATCTATCTTCACAGCACCTCCCATTTTTCTCTCTACAACTGTCCACCAGATGCATTGTGGTATGATCCTCCTCCACCACTTCTTTTGGCTTTTGCTACCTCTTCTTTTCATTCAGCAGCTAAGCAAATTTGCAGTATGCTCCAGCATGGTCCAACTTGTCTTTATTATGTTGAGAAATAAGAGACCAAAGTGGTGCTGTAAGAAGCACTTGGAAACTATGATGGCCCCCTTTTTCTTCGGAACTTCTTGTGTCAGGCATGTTCTTTTAACCACCAATCCAATAAAGCATTTTACCTTAACTAACACAAAGTGCACTAGGTACCATTACTTGTAATAATTCTGGTTGATTTTATTAGAAGTAATGGTTCCTACTTCCTAGTGCACCTAATTGTACGACACTTCTAGTTGATTGTTAGAGCTGTAATTCGTCTGCAATTTTCATAATCTTATCCCTCTAGTGGTCAAAAAATTATTGCGTAGTTAGATTTCTTTCATTGTTGAAAATGATTCTCTCTTCTTAAGAAACAAGGGTGTATAATGTTGTTTTAATGCTTGTACTAAGCTAGTTTACTCTGAGGCTAGCCCCATTCTGCATTAACTTAGAACTTAGAAGGTTGAATCTGCTTGCTAGCGTGAAATAATGTTGCATGGGTTCTTAGTGCTGATTGAAAGAAAATCATGAGGTTGTGTAATAAGGTCATCTGAAGTTTAATTTCACTTCGAGTAAAGATTTTGGCGCTTAAAAGCTATTCAATTGAAGAGGAAGTATCAGTTTCCTGTACCAGCAACAATATGTCTACAGTAGAATAACTAGTGATTGTTAGAATTGGGAGTATAGATTCTTCTAGTTTCTGCAAAATCAGATACGATATTTAGGAGTATTTTTCTAAAAGGTCGGGAATGAAGATTGGTAATCCTGTTTCTTTATGATATTGATTAGCTTTTGCAAATTCTACATAACTAACACTAGTTTCTGGTTTCCTATTGCAGTTAACTTGTAAGGTAACTACATCAGGAACTGTAGTCCAGCCCTCAATTCCTGTTCAGATTGTGCAGATCATTATTGCGATGCTGGTCATGGACACATGGCAGTACTTTGTGCATCGCTACATGCA</genome_strand>
        <mrna_strand>CATCCCTTTCCCTTTTCCAACGAATCTCTCAGAATCATAAATTC------AAAAAAAAAAGTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCTATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGATTTCATTTTCTTGGATTCTTGTTTCAGGGTGTATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAAGGGGAAAGGGGTTAAC----TTTTTTTTTTTGAAAAGGGGGCTTAAAAATGGTGTTCTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTGGTGTATTGGTTGTATGCAGGGTTCTATCAGCTATTGCCTCCCATGGATAAATATCGTCTTCATACAAGGAAAGAGGAAAATGCCAAGAACTTAGTTCCACTGGCTTCTGTTGTTAAAGGGGTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTTGTAAGGTAACTACATCAGAAACTGTAGTCCAGCCCTCAATTCCTGTTCAGATTGTGCAGATCATTATTGCGATGCTGGTCATGGACACATGGCAGTACTTTGTGCATCGCTACATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455585" ref_strand="+" ref_description="SGN-E455585 [cSTS-26-B2]">
      <seq>atcccttccccttttccaacgaatctctcagaataatcaattcaaaaaaaaaattaggccgaatctcacaactgtcagcactatcattgtattaaccccagctcaactctcatatattaatacatacatttacatacatattctccagatctgttcacatatttccaatcattgtttctctaaggtttcccaaaaccaccaccagtaatttctatgctttgttggggctaaagatttgatcttttgttcaagaacttatttgggttttcattttcttggatttttgtttcagggtgtatgttgtatgtagatcttgagctgggaatttcataattgagtgttggattgagggaaaagggaaagggggtaaattttttttttttgaaaaggggattaaaaaatggtgttttgggagggttatgtgagtgatgaagtgatggggacatttgccccaatagtggtgtattggttgtatgcagggttttatcagctattgcctcccatggataaatatcgtcttcatacaaggaaagaggaaaatgccaagaatttagttccactggcttctgttgttaaaggggttcttcttcagcagttttttcaggcaactgttgcccacttgctctttttgttaacttgtaaggtaactacatcagaaactgtagtccagccctcaattccctgtcagattgtgcagatcattattgcgatgctggtcatggcacatggcagtactttgtgcatcgctacatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="19517" stop="12570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19217" g_stop="18562" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18561" i_stop="12995" i_length="5567">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12994" g_stop="12870" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="755" r_length="124" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E455585" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.034" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19217" e_stop="18562"/>
          <exon e_start="12994" e_stop="12870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTTTTCCTTTTCCAACGAATCTCTCAGAATCACAAATTCAAAAAAAAAAAAAAAAGTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTC--ATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCAATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTCTTGTTTCAATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAAGGGAAAGGGGGTAACTTTTTTTTTTTTTTTGAAAAGGGGGCTTAAAAATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTGGTGTATTGGTTGTATGCAGGGTTCTATCAGCTATTGCCTCCCATGGATAAATATCGTCTTCATACTAGGAAAGAGGAAAATGCCAAGAACTTAGTTCCACTGGCTTCTGTTGTTAAAGGGGTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTGGTAATTCCTCAGCTATTTTTGGTTCTGGTTCCATAAACTGTGTCTGTCTGTCTTGGTTGGAGTTCTTTGGATTGATTAGTTAACTGTGTGACTGGGTGGATAAGGCCTGTAGAAATGGATAAGTAGAGTTGCTCCTTTGATGGCATGTAGGTCACACGTTTGAGGCATCGATACAAACCTTTAGTAGAAATGCAAAGAGAGGGCTGTGTACGACATACACCTTCCTCCTACGAACACTAGTTGGGAGCACTTAATGCATTGGCTAAACTGATTTATAACAAAGTGGTCAGATTATATTGCTGTCAGACTTCCAATTATGACCAGCTTGTTGTTTGCAGTTACTTACTTAAGAGGGTAATGAACTATTGCATGACTTCTCATGTAGTGTGCTCTAATTAGTGCACTGGTTATTTGATTTTGATTCAATACTCTTCTATTTAATGTGCCAATCAGCCTTAGCTTATGCAGTGATTACTTTTATCGACAACATTGACCAGCGACAAACGTTCTCCCCTCTCCCCTTCATATATAATATATAGCGTTGAAATGCTAATCACATCTCTGTGTTTGGCGTTGTCCTTCATCGAATATTGTTCCTCATGAAGTTGATAGAAAAGGAGTCAGAGCGGCAGAAAGGAAGTACAGAAAAATTCATCTATAGCTTAGTAACCATTATGTCATATACTCGTGAGAGAATGAAGCACTTAAGATGATGAAAGTATTTTCTGAACAAGTTAATGAATGCAGGAATGGTGCCTTTCAACCTTTTTCTTTAGAAGCATTCATAAGTTCGTTCTATACAGACGGTCCAATAGCGGACATCCTCAAATGTGCTCCCCCCTCCAATACACATAACAGTATAAGTCTTTGATCGTTCAATGGATTGACTACATTGCCATATTTTATTTTGTCCTTTTAAGAACATTTTCTTCATGAAATTGATAGAAGTGGACAGAGAGAGGGAAGAAGTCTAGAATATAATATCTGAAGCATGGCAAAATTGATCATCATGTTATATTCTCCCAGGTAAATGTAGTATCTTTTTAACAAGTAGATGAACGAAGGGTTGGACAAGTTTCAATTTTTTGTGTGTTGCAAGAAGCATAAGAAGGTTAATAAAAAATGTTAAATTAGATTATATGCATTTTGTAGATGCCGTTGAATCAATTTGTGTATTTGACCTAACCTATAAGCACGAGGAAGTGAAATGAAGATCTAAGCAGCTTTTCTAGTCTTACTGAAAAGCATGCTTCATATGTTCCCCATTTTCACTTCAAGTACGCCAATTTAGGGACACATCAGAAATGAAAGAGCTTCAAGGAGACACCAAATGGTGACTTCTCATCTCGCATCACATATTGGAATTTTGAAGGAAACTATCTGAAAGATCAGTTTCTCCCATTATGGTCAAAGTAGGAAATATGCTATTTGGATAACTAGCATTCTACCCTTCGGGGTGACCCAGTGGTTTGGGCTTGGGACTTCCATGTTGGAGGTCTCCATATCGAAACCCCTTGCAAGCGAAAGCAAGGGGTTTTCCTTCTGGGTCGCGCTCGTCGTACCGGGCTTGCCAGTGCAGGTTAACTCTCCTACGTGGTTTGCAAGCTCTTGCATAGGAGCGGGGGTTTCTCCTTGTGCGCACTCTAAGGGTAGTGGATGTTGGTTCCCCTAGTTATTTAAAAAAAAAAACTACCATTCTGTTGTATCTTCCAAATCAGGGTGTTGTATTAGTGGCCATGCCAGATTTACTTGTACAACCTGGACCTTGCATGTTGCTTCTTTTTTCTTTTATACATTGCTATGTTTGTTGAACTTGAACTTCTAGAATAAACTTGCAGAATTTGTAATTTCAAAAGGCTTTGGGGACACTTCCTATGATGTAGATAGTTCAAGTCTTGCTATATTTTAGTCACCATTGAGCTGATCAACCTAAAAATAAACGTGGTACCAATACTGTTTCCCGGACGACTATTATAACTACATGCTTATCCAATGGGTAGCTACTCACCTGGATTTCCTCGACGTAACCATTGGATAACACCAATATAATTTAGCCATGTGGACGAACTCTTCCATACCCTCTCCCTCTGTTAGGCCACAACTTTCATATTGGTCTTATAGCATCTGCAGACCTATGGTACTGAAGAGAACACATGTTTCGGAAGTTTTTTGCTCCAAAAAAGTGATATCTTATCTATGGTGAAATTGCTGTTTGCTCTTGTAATTGTGTTGGGATAATGAATGAAGAACCTGTGACCACTTCTTCCCACAGACATGTATCAGTGTGAGCGCTAGTCTATACCAGCGGATTCTATCCATAGGTCATATATATGCTAAGCAACATAGACCCATAAATGAGCCAAAGGAAGAATGAACTTTAGAGTCATCCTGATGGGTTTATCAACTAACTAAAATTACCCGAGTCTCTGGTTTAGCGGTCAATGAAGTGGGTGAAAATCACGAGAGACCAGGGTTCAAAATCCTAACTCAGGCAAAAAAACTCTAGATGGTTTCTTTTCATTTGTCTAAGCCTGTTGGACACAATTACTAGGTGCCTTTGTTGGTGAGAGGCGGTTGATACCTGGTGAAATAGTCAAATGGTGCAAGCTGGCTCGAGCACCACAATTATCATTTAGTAAATCTAGTAAAAATTATTTTCTCCCCCTTCAAAGATGGCTTGCACATTTATGGGACTGTCTTTAATATGTATTTTTTCCTTTTTGTTTCTTCAGCTTTAGAATTCCCCATGCTTACAGTTTGCTTGAGTATTTCTTGAATTTGGATAATATACCTTGAACACATTTCGGAACAGATCAAACAATATGTGTGGTCATCTCTCTTCTTTATATTATACATCCAGAAACCTACAAATCCTCCTGCCTTCTTTTTATCCGAATTAATCGTTTTAATATGTTTATCGAATTTTTTTGCTCTGGGGTTCCATTAGCTGCTAGGGTCACATGATAAAGGTGATCTTTTGCCTTCTAGTGAAGTTTTGCAGCTGTCAAATCTCTTCACCCACGACCTATCAGTAAAAATGTATTAACCTAAACTTTTTATGGTTGAGACACGTGGAATGATCTATGCCTCCAATGTAGGGTTTTGGGTTGTTAATGCAACATGAAATTTTTTCTGGTACAGTTGTATTTGTTCTGACCTACAGATAGTTTCGAAGATGCCATCTATATTACTTGGGTCTCTATGAGCAATTATCATGGATAGATCAAGAGGGAATTCTGTTGCAAATGGTTAATGATCTAACTGGAACTAATAAACGGAGTAGGTCTTGACATTCATACTTACATATTGGAGTTTAGAGATTTCTACAAATGCTTATTTTGCTCATCGACTGTCAGGGAAACAAATTTTTGTCTCATAATCTGATATTGCGAGTTTGATGAGTTGTGTTCGCTTCTCTTCTTTTTACCTTTTTCATTCTTTTTTGTTTATGTATTGGGTAGTAAGAATTGAAATTCAAATGATACCTGGTGACTTTAAGACTAGGAGGTTACCTCCCAAGCTATTGAGGCTATTGGACTGTTTGCGATCATCACATCTTTTACCATGTTTAGGTTGACCTCAGGTCAAATTACCTCATTCATCTTATCCTCTTTCACTGTTGATCTCCAGGGACACAATATTTAATGTGGATACAGTCCAAACAACCACAAGTCTCACCCTTGCTTCAAATCCATCAGCTAACACATCTTTTGGTCCAGTGACAATTCCTACCACTTTTCTACCACCAAACATGTTGTGAATTTCTGAGTCAAATGACCAATTTGTAAAACTTAATTGATATAACATCAGAACATCAAGACCAACATCTTGTCTCTAATATACTTGTTTGCCTAAATCCATGACCTGAAGGCAAAAGTGCCTGTCTGGTTTCTCCAACAATATTCCTTAGTGTGGAAATTTGTATAGATGTTTTAGAACCACTGCAGTTAGCTCAATCAGAACAGTGATCAAGCAACAAATGCTGGAAACTAATGTCGTTAACTTTAAGGCTAATTTCAGGTAGGCAATCACTAGGCCGAACTGTTCTGTTATCACTATTCATCTTGTCAAGTTTCCCTAGTGCAACTGGCATTGATCAACAGGGGCTATTCAGAAAGGAGTAAGTGGAGTAGAGATTGTGGCTTTTTATAGTTTAATAGGCTACAGATTGGGAAATTAATAGATGGGGAAGGTAGGTGTGGTAGTAGCAACAGGAAATTGGGAGACAAGTAGATGGGAAAATTGGTAGGGCAAAGGGGAGTAAGGGGACCACAGGTGTGAGTTGAGGTCAGAATGTGAAATTACAAACTGGTCAATCAGGGTGGTAGCTGAGGTTGGATTTTGACAGAGTACTTCACTTTTTTTTTTGGAAACTGGTCAATGTGTATTACTCAACATTGAGGACATGCTGCAGACCATCAAAAAGTGTTGAAAGTTAAAAAAAAATAAAAAATACAAAAGAAGATACTTAGATCTTAATAGATCTACAAAATGATCAATATTCTCTAAACCTACTTCTTTACAACAAAAGTAGAATGATATTATACAATTCGATTTAACTTTCTGAATGGAATTGGATCTATCTTCACAGCACCTCCCATTTTTCTCTCTACAACTGTCCACCAGATGCATTGTGGTATGATCCTCCTCCACCACTTCTTTTGGCTTTTGCTACCTCTTCTTTTCATTCAGCAGCTAAGCAAATTTGCAGTATGCTCCAGCATGGTCCAACTTGTCTTTATTATGTTGAGAAATAAGAGACCAAAGTGGTGCTGTAAGAAGCACTTGGAAACTATGATGGCCCCCTTTTTCTTCGGAACTTCTTGTGTCAGGCATGTTCTTTTAACCACCAATCCAATAAAGCATTTTACCTTAACTAACACAAAGTGCACTAGGTACCATTACTTGTAATAATTCTGGTTGATTTTATTAGAAGTAATGGTTCCTACTTCCTAGTGCACCTAATTGTACGACACTTCTAGTTGATTGTTAGAGCTGTAATTCGTCTGCAATTTTCATAATCTTATCCCTCTAGTGGTCAAAAAATTATTGCGTAGTTAGATTTCTTTCATTGTTGAAAATGATTCTCTCTTCTTAAGAAACAAGGGTGTATAATGTTGTTTTAATGCTTGTACTAAGCTAGTTTACTCTGAGGCTAGCCCCATTCTGCATTAACTTAGAACTTAGAAGGTTGAATCTGCTTGCTAGCGTGAAATAATGTTGCATGGGTTCTTAGTGCTGATTGAAAGAAAATCATGAGGTTGTGTAATAAGGTCATCTGAAGTTTAATTTCACTTCGAGTAAAGATTTTGGCGCTTAAAAGCTATTCAATTGAAGAGGAAGTATCAGTTTCCTGTACCAGCAACAATATGTCTACAGTAGAATAACTAGTGATTGTTAGAATTGGGAGTATAGATTCTTCTAGTTTCTGCAAAATCAGATACGATATTTAGGAGTATTTTTCTAAAAGGTCGGGAATGAAGATTGGTAATCCTGTTTCTTTATGATATTGATTAGCTTTTGCAAATTCTACATAACTAACACTAGTTTCTGGTTTCCTATTGCAGTTAACTTGTAAGGTAACTACATCAGGAACTGTAGTCCAGCCCTCAATTCCTGTTCAGATTGTGCAGATCATTATTGCGATGCTGGTCATGGACACATGGCAGTACTTTGTGCATCGCTACATGCA</genome_strand>
        <mrna_strand>ATCCCTTCCCCTTTTCCAACGAATCTCTCAGAATAATCAATTCAAAAAA------AAAA-TTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATATATTAATACATACATTTACATACATATTCTCCAGATCTGTTCACATATTTCCAATCATTGTTTCTCTAAGGTTTCCCAAAACCACCACCAGTAATTTCTATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTTTTGTTTC-A-G--G----GTGTATGTTGTATGTAGATCTTGAGCTGGGAATTTCATAA-TT-GAGTGTTGGATTGAGGG---A---A-AAGGGAAAGGGGGTAA---ATTTTTTTTTTTTGAAAAGGGGATTAAAAAATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTGGTGTATTGGTTGTATGCAGGGTTTTATCAGCTATTGCCTCCCATGGATAAATATCGTCTTCATACAAGGAAAGAGGAAAATGCCAAGAATTTAGTTCCACTGGCTTCTGTTGTTAAAGGGGTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTTGTAAGGTAACTACATCAGAAACTGTAGTCCAGCCCTCAATTCCCTGTCAGATTGTGCAGATCATTATTGCGATGCTGGTCATGG-CACATGGCAGTACTTTGTGCATCGCTACATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425903" ref_strand="+" ref_description="SGN-E425903 [STM-45-B22]">
      <seq>atcccttccccttttccaacgaatctctcagaataatcaattcaaaaaaaaaattaggccgaatctcacaactgtcagcactatcattgtattaaccccagctcaactctcatatattaatacatacatttacatacatattctccagatctgttcacatatttccaatcattgtttctctaaggtttcccaaaaccaccaccagtaatttctatgctttgttggggctaaagatttgatcttttgttcaagaacttatttgggttttcattttcttggatttttgtttcagggtgtatgttgtatgtagatcttgagctgggaatttcataattgagtgttggattgagggaaaagggaaagggggtaaattttttttttttgaaaaggggattaaaaaatggtgttttgggagggttatgtgagtgatgaagtgatggggacatttgccccaatagtggtgtattggttgtatgcagggttttatcagctattgcctcccatggataaatatcgtcttcatacaaggaaagaggaaaatgccaagaatttagttccactggcttctgttgttaaaggggttcttcttcagcagttttttcaggcaactgttgcccacttgctctttttgttaacttgtaaggtaactacatcagaaactgtagtccagccctcaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="19517" stop="12645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19217" g_stop="18562" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18561" i_stop="12995" i_length="5567">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12994" g_stop="12945" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="681" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E425903" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.037" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19217" e_stop="18562"/>
          <exon e_start="12994" e_stop="12945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTTTTCCTTTTCCAACGAATCTCTCAGAATCACAAATTCAAAAAAAAAAAAAAAAGTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTC--ATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCAATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTCTTGTTTCAATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAAGGGAAAGGGGGTAACTTTTTTTTTTTTTTTGAAAAGGGGGCTTAAAAATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTGGTGTATTGGTTGTATGCAGGGTTCTATCAGCTATTGCCTCCCATGGATAAATATCGTCTTCATACTAGGAAAGAGGAAAATGCCAAGAACTTAGTTCCACTGGCTTCTGTTGTTAAAGGGGTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTGGTAATTCCTCAGCTATTTTTGGTTCTGGTTCCATAAACTGTGTCTGTCTGTCTTGGTTGGAGTTCTTTGGATTGATTAGTTAACTGTGTGACTGGGTGGATAAGGCCTGTAGAAATGGATAAGTAGAGTTGCTCCTTTGATGGCATGTAGGTCACACGTTTGAGGCATCGATACAAACCTTTAGTAGAAATGCAAAGAGAGGGCTGTGTACGACATACACCTTCCTCCTACGAACACTAGTTGGGAGCACTTAATGCATTGGCTAAACTGATTTATAACAAAGTGGTCAGATTATATTGCTGTCAGACTTCCAATTATGACCAGCTTGTTGTTTGCAGTTACTTACTTAAGAGGGTAATGAACTATTGCATGACTTCTCATGTAGTGTGCTCTAATTAGTGCACTGGTTATTTGATTTTGATTCAATACTCTTCTATTTAATGTGCCAATCAGCCTTAGCTTATGCAGTGATTACTTTTATCGACAACATTGACCAGCGACAAACGTTCTCCCCTCTCCCCTTCATATATAATATATAGCGTTGAAATGCTAATCACATCTCTGTGTTTGGCGTTGTCCTTCATCGAATATTGTTCCTCATGAAGTTGATAGAAAAGGAGTCAGAGCGGCAGAAAGGAAGTACAGAAAAATTCATCTATAGCTTAGTAACCATTATGTCATATACTCGTGAGAGAATGAAGCACTTAAGATGATGAAAGTATTTTCTGAACAAGTTAATGAATGCAGGAATGGTGCCTTTCAACCTTTTTCTTTAGAAGCATTCATAAGTTCGTTCTATACAGACGGTCCAATAGCGGACATCCTCAAATGTGCTCCCCCCTCCAATACACATAACAGTATAAGTCTTTGATCGTTCAATGGATTGACTACATTGCCATATTTTATTTTGTCCTTTTAAGAACATTTTCTTCATGAAATTGATAGAAGTGGACAGAGAGAGGGAAGAAGTCTAGAATATAATATCTGAAGCATGGCAAAATTGATCATCATGTTATATTCTCCCAGGTAAATGTAGTATCTTTTTAACAAGTAGATGAACGAAGGGTTGGACAAGTTTCAATTTTTTGTGTGTTGCAAGAAGCATAAGAAGGTTAATAAAAAATGTTAAATTAGATTATATGCATTTTGTAGATGCCGTTGAATCAATTTGTGTATTTGACCTAACCTATAAGCACGAGGAAGTGAAATGAAGATCTAAGCAGCTTTTCTAGTCTTACTGAAAAGCATGCTTCATATGTTCCCCATTTTCACTTCAAGTACGCCAATTTAGGGACACATCAGAAATGAAAGAGCTTCAAGGAGACACCAAATGGTGACTTCTCATCTCGCATCACATATTGGAATTTTGAAGGAAACTATCTGAAAGATCAGTTTCTCCCATTATGGTCAAAGTAGGAAATATGCTATTTGGATAACTAGCATTCTACCCTTCGGGGTGACCCAGTGGTTTGGGCTTGGGACTTCCATGTTGGAGGTCTCCATATCGAAACCCCTTGCAAGCGAAAGCAAGGGGTTTTCCTTCTGGGTCGCGCTCGTCGTACCGGGCTTGCCAGTGCAGGTTAACTCTCCTACGTGGTTTGCAAGCTCTTGCATAGGAGCGGGGGTTTCTCCTTGTGCGCACTCTAAGGGTAGTGGATGTTGGTTCCCCTAGTTATTTAAAAAAAAAAACTACCATTCTGTTGTATCTTCCAAATCAGGGTGTTGTATTAGTGGCCATGCCAGATTTACTTGTACAACCTGGACCTTGCATGTTGCTTCTTTTTTCTTTTATACATTGCTATGTTTGTTGAACTTGAACTTCTAGAATAAACTTGCAGAATTTGTAATTTCAAAAGGCTTTGGGGACACTTCCTATGATGTAGATAGTTCAAGTCTTGCTATATTTTAGTCACCATTGAGCTGATCAACCTAAAAATAAACGTGGTACCAATACTGTTTCCCGGACGACTATTATAACTACATGCTTATCCAATGGGTAGCTACTCACCTGGATTTCCTCGACGTAACCATTGGATAACACCAATATAATTTAGCCATGTGGACGAACTCTTCCATACCCTCTCCCTCTGTTAGGCCACAACTTTCATATTGGTCTTATAGCATCTGCAGACCTATGGTACTGAAGAGAACACATGTTTCGGAAGTTTTTTGCTCCAAAAAAGTGATATCTTATCTATGGTGAAATTGCTGTTTGCTCTTGTAATTGTGTTGGGATAATGAATGAAGAACCTGTGACCACTTCTTCCCACAGACATGTATCAGTGTGAGCGCTAGTCTATACCAGCGGATTCTATCCATAGGTCATATATATGCTAAGCAACATAGACCCATAAATGAGCCAAAGGAAGAATGAACTTTAGAGTCATCCTGATGGGTTTATCAACTAACTAAAATTACCCGAGTCTCTGGTTTAGCGGTCAATGAAGTGGGTGAAAATCACGAGAGACCAGGGTTCAAAATCCTAACTCAGGCAAAAAAACTCTAGATGGTTTCTTTTCATTTGTCTAAGCCTGTTGGACACAATTACTAGGTGCCTTTGTTGGTGAGAGGCGGTTGATACCTGGTGAAATAGTCAAATGGTGCAAGCTGGCTCGAGCACCACAATTATCATTTAGTAAATCTAGTAAAAATTATTTTCTCCCCCTTCAAAGATGGCTTGCACATTTATGGGACTGTCTTTAATATGTATTTTTTCCTTTTTGTTTCTTCAGCTTTAGAATTCCCCATGCTTACAGTTTGCTTGAGTATTTCTTGAATTTGGATAATATACCTTGAACACATTTCGGAACAGATCAAACAATATGTGTGGTCATCTCTCTTCTTTATATTATACATCCAGAAACCTACAAATCCTCCTGCCTTCTTTTTATCCGAATTAATCGTTTTAATATGTTTATCGAATTTTTTTGCTCTGGGGTTCCATTAGCTGCTAGGGTCACATGATAAAGGTGATCTTTTGCCTTCTAGTGAAGTTTTGCAGCTGTCAAATCTCTTCACCCACGACCTATCAGTAAAAATGTATTAACCTAAACTTTTTATGGTTGAGACACGTGGAATGATCTATGCCTCCAATGTAGGGTTTTGGGTTGTTAATGCAACATGAAATTTTTTCTGGTACAGTTGTATTTGTTCTGACCTACAGATAGTTTCGAAGATGCCATCTATATTACTTGGGTCTCTATGAGCAATTATCATGGATAGATCAAGAGGGAATTCTGTTGCAAATGGTTAATGATCTAACTGGAACTAATAAACGGAGTAGGTCTTGACATTCATACTTACATATTGGAGTTTAGAGATTTCTACAAATGCTTATTTTGCTCATCGACTGTCAGGGAAACAAATTTTTGTCTCATAATCTGATATTGCGAGTTTGATGAGTTGTGTTCGCTTCTCTTCTTTTTACCTTTTTCATTCTTTTTTGTTTATGTATTGGGTAGTAAGAATTGAAATTCAAATGATACCTGGTGACTTTAAGACTAGGAGGTTACCTCCCAAGCTATTGAGGCTATTGGACTGTTTGCGATCATCACATCTTTTACCATGTTTAGGTTGACCTCAGGTCAAATTACCTCATTCATCTTATCCTCTTTCACTGTTGATCTCCAGGGACACAATATTTAATGTGGATACAGTCCAAACAACCACAAGTCTCACCCTTGCTTCAAATCCATCAGCTAACACATCTTTTGGTCCAGTGACAATTCCTACCACTTTTCTACCACCAAACATGTTGTGAATTTCTGAGTCAAATGACCAATTTGTAAAACTTAATTGATATAACATCAGAACATCAAGACCAACATCTTGTCTCTAATATACTTGTTTGCCTAAATCCATGACCTGAAGGCAAAAGTGCCTGTCTGGTTTCTCCAACAATATTCCTTAGTGTGGAAATTTGTATAGATGTTTTAGAACCACTGCAGTTAGCTCAATCAGAACAGTGATCAAGCAACAAATGCTGGAAACTAATGTCGTTAACTTTAAGGCTAATTTCAGGTAGGCAATCACTAGGCCGAACTGTTCTGTTATCACTATTCATCTTGTCAAGTTTCCCTAGTGCAACTGGCATTGATCAACAGGGGCTATTCAGAAAGGAGTAAGTGGAGTAGAGATTGTGGCTTTTTATAGTTTAATAGGCTACAGATTGGGAAATTAATAGATGGGGAAGGTAGGTGTGGTAGTAGCAACAGGAAATTGGGAGACAAGTAGATGGGAAAATTGGTAGGGCAAAGGGGAGTAAGGGGACCACAGGTGTGAGTTGAGGTCAGAATGTGAAATTACAAACTGGTCAATCAGGGTGGTAGCTGAGGTTGGATTTTGACAGAGTACTTCACTTTTTTTTTTGGAAACTGGTCAATGTGTATTACTCAACATTGAGGACATGCTGCAGACCATCAAAAAGTGTTGAAAGTTAAAAAAAAATAAAAAATACAAAAGAAGATACTTAGATCTTAATAGATCTACAAAATGATCAATATTCTCTAAACCTACTTCTTTACAACAAAAGTAGAATGATATTATACAATTCGATTTAACTTTCTGAATGGAATTGGATCTATCTTCACAGCACCTCCCATTTTTCTCTCTACAACTGTCCACCAGATGCATTGTGGTATGATCCTCCTCCACCACTTCTTTTGGCTTTTGCTACCTCTTCTTTTCATTCAGCAGCTAAGCAAATTTGCAGTATGCTCCAGCATGGTCCAACTTGTCTTTATTATGTTGAGAAATAAGAGACCAAAGTGGTGCTGTAAGAAGCACTTGGAAACTATGATGGCCCCCTTTTTCTTCGGAACTTCTTGTGTCAGGCATGTTCTTTTAACCACCAATCCAATAAAGCATTTTACCTTAACTAACACAAAGTGCACTAGGTACCATTACTTGTAATAATTCTGGTTGATTTTATTAGAAGTAATGGTTCCTACTTCCTAGTGCACCTAATTGTACGACACTTCTAGTTGATTGTTAGAGCTGTAATTCGTCTGCAATTTTCATAATCTTATCCCTCTAGTGGTCAAAAAATTATTGCGTAGTTAGATTTCTTTCATTGTTGAAAATGATTCTCTCTTCTTAAGAAACAAGGGTGTATAATGTTGTTTTAATGCTTGTACTAAGCTAGTTTACTCTGAGGCTAGCCCCATTCTGCATTAACTTAGAACTTAGAAGGTTGAATCTGCTTGCTAGCGTGAAATAATGTTGCATGGGTTCTTAGTGCTGATTGAAAGAAAATCATGAGGTTGTGTAATAAGGTCATCTGAAGTTTAATTTCACTTCGAGTAAAGATTTTGGCGCTTAAAAGCTATTCAATTGAAGAGGAAGTATCAGTTTCCTGTACCAGCAACAATATGTCTACAGTAGAATAACTAGTGATTGTTAGAATTGGGAGTATAGATTCTTCTAGTTTCTGCAAAATCAGATACGATATTTAGGAGTATTTTTCTAAAAGGTCGGGAATGAAGATTGGTAATCCTGTTTCTTTATGATATTGATTAGCTTTTGCAAATTCTACATAACTAACACTAGTTTCTGGTTTCCTATTGCAGTTAACTTGTAAGGTAACTACATCAGGAACTGTAGTCCAGCCCTCAATTCC</genome_strand>
        <mrna_strand>ATCCCTTCCCCTTTTCCAACGAATCTCTCAGAATAATCAATTCAAAAAA------AAAA-TTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATATATTAATACATACATTTACATACATATTCTCCAGATCTGTTCACATATTTCCAATCATTGTTTCTCTAAGGTTTCCCAAAACCACCACCAGTAATTTCTATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTTTTGTTTC-A-G--G----GTGTATGTTGTATGTAGATCTTGAGCTGGGAATTTCATAA-TT-GAGTGTTGGATTGAGGG---A---A-AAGGGAAAGGGGGTAA---ATTTTTTTTTTTTGAAAAGGGGATTAAAAAATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTGGTGTATTGGTTGTATGCAGGGTTTTATCAGCTATTGCCTCCCATGGATAAATATCGTCTTCATACAAGGAAAGAGGAAAATGCCAAGAATTTAGTTCCACTGGCTTCTGTTGTTAAAGGGGTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTTGTAAGGTAACTACATCAGAAACTGTAGTCCAGCCCTCAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704242" ref_strand="+" ref_description="SGN-E704242 [FA23DA03]">
      <seq>gttaggccgaatctcacaactgtcagcactatcattgtattaaccccagctcaactctcatgttaatacatacatttacatacatatgccccagatctgttctcatatttccaataattgtttctctaagatttgccaaaatcaccaccagtaatttcaatgctttgttggggctaaagatttgatcttttgttcaagaacttatttgggttttcattttcttggattcttgtttcaatgttgtaatgtgcttgttgtatgtagatcttgagctgggaatttcataatttagagtgttggattgagggaaaagggataagggaaagggggtaacttttttttttttttaaaaagggggctaaaaaatggggttttggaagggttatgtaattaataaagggatgggaacttttcccccaaaaggggggtatgggttgaatgcagggttctatcacttattgcctcccagggaaaaaaatcccctccttactaggaaaaagaaaattgccaaaaacttattcccccggccttctgtggtaaaaggggtcctttttcaaaagttttttcaggaaatggtggcccacttgctctttttgtaaacttgaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="19458" stop="18258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19158" g_stop="18562" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E704242" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19158" e_stop="18562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCAATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTCTTGTTTCAATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAAGGGAAAGGGGGTAACTTTTTTTTTTTTTTTGAAAAGGGGGCTTAAAAATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTGGTGTATTGGTTGTATGCAGGGTTCTATCAGCTATTGCCTCCCATGGATAAATATCGTCTTCATACTAGGAAAGAGGAAAATGCCAAGAACTTAGTTCCACTGGCTTCTGTTGTTAAAGGGGTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTG</genome_strand>
        <mrna_strand>GTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCAATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTCTTGTTTCAATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAAGGGAAAGGGGGTAAC-TTTTTTTTTTTTTTAAAAAGGGGGCTAAAAAATGGGGTTTTGGAAGGGTTATGTAATTAATAAAGGGATGGGAACTTTTCCCCCAAAAGGGGGGTATGGGTTGAATGCAGGGTTCTATCACTTATTGCCTCCCAGGGAAAAAAATCCCCTCCTTACTAGGAAAAAGAAAATTGCCAAAAACTTATTCCCCCGGCCTTCTGTGGTAAAAGGGGTCCTTTTTCAAAAGTTTTTTCAGGAAATGGTGGCCCACTTGCTCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360831" ref_strand="+" ref_description="SGN-E360831 [cLPP-7-B20]">
      <seq>atccctttcccttttccaacgaatctctcagaatcataaattcaaaaaaaaaagttaggccgaatctcacaactgtcagcactatcattgtattaaccccagctcaactctcatgttaatacatacatttacatacatatgccccagatctgttctcatatttccaataattgtttctctaagatttgccaaaatcaccaccagtaatttctatgctttgttggggctaaagatttgatcttttgttcaagaacttatttgggatttcattttcttggattcttgtttcagggtgtatgttgtaatgtgcttgttgtatgtagatcttgagctgggaatttcataatttaaagtgttggattgagggaaaagggataagggaaaggggttaactttttttttttgaaaagggggcttaaaaatggtgttctgggagggttatgtgagtgatgaaatgatggggacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="19517" stop="18446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19217" g_stop="18746" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E360831" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19217" e_stop="18746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTTTTCCTTTTCCAACGAATCTCTCAGAATCACAAATTCAAAAAAAAAAAAAAAAGTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCAATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTCTTGTTTCA------ATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAAGGGAAAGGGGGTAACTTTTTTTTTTTTTTTGAAAAGGGGGCTTAAAAATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATT</genome_strand>
        <mrna_strand>ATCCCTTTCCCTTTTCCAACGAATCTCTCAGAATCATAAATTC------AAAAAAAAAAGTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCTATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGATTTCATTTTCTTGGATTCTTGTTTCAGGGTGTATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAAAGTGTTGGATTGAGGGAAAAGGGATAAGGGAAAGGGGTTAAC----TTTTTTTTTTTGAAAAGGGGGCTTAAAAATGGTGTTCTGGGAGGGTTATGTGAGTGATGAAATGATGGGGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343557" ref_strand="+" ref_description="SGN-E343557 [cTOF-19-J19]">
      <seq>cacaacaacatagagttgttaatcatgttgatgacagcaacagcaccttgttagaacgcagtggaactgccagccaaatttatggttattctctggccccgtcggtattgcatcaaactgttgcaggctcaatacatcaaaatgctgttggctcactggcaggacctgtgggaggtgttgtggccatggatggagctggagaaggtaatttagtgaaaggaggttcatgtgttggagttcatggagggactctagttgatcatacacctagtcaaataggaagtcatactggtcagttatatggaccccctggtgatgcacacacctatgcttataggtcgccatcctactttgaagcatcgggctctatggggttgccaaacaccatgcctggtgatgcttataggcctccaccatatttggaaggctctatggggttgccaaacaacataccgggtgatgcttataggccaaaccaatacatgaaatgctccaacggcttgcaaaaaaacatatctggtgatgctaatcagcctccaccatacatggaaggctctgcacggttgccaaacaccatacctgcaccatatcagtttgctgattctgttccatctgctgcccttgctcatncttcaccctncttgtactggaagagatagttttgcattgggcaggcattatttctaacgtagtttcccttttgtagtatacccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="24129" stop="25443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24429" g_stop="25143" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E343557" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24429" e_stop="25143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACAACATAGAGTTGTTAATCATGTTGATGACAGCAACAGCACCTTGTTAGAACGCAGTGGAACTGCCAGCCAAATTTATGGTTATTCTCTGGCCCCGTCGGTATTGCATCAAACTGTTGCAGGCTCAATACATCAAAATGCTGTTGGCTCACTGGCAGGACCTGTGGGAGGTGTTGTGGCCATGGATGGAGCTGGAGCAGGTAATTTAGTGAAAGGAGGTTCATGTGTTGGAGTTCATGGAGGGACTCTAGTTGATCATACACCTAGTCAAATAGGAAGTCATACTGGTCAGTTATATGGACCCCCTGGTGATGCACACACCTATGCTTATAGGTCGCCATCCTACTTTGAAGCATCGGGCTCTATGGGGTTGCCAAACACCATGCCTGGTGATGCTTATAGGCCTCCACCATATTTGGAAGGCTCTATGGGGTTGCCAAACAACATACCGGGTGATGCTTATAGGCCAAACCAATACATGAAATGCTCCAACGGCTTGCAAAAAAACATATCTGGTGATGCTAATCAGCCTCCACCATACATGGAAGGCTCTGCACGGTTGCCAAACACCATACCTGCACCATATCAGTTTGCTGATTCTGTTCCATCTGCTGCCCTTGCTCATCCTTCACCCTCCTTGTACTGGAAGAGATAGTTTTGCATTGGGCAGGCATTATTTCTAACGTAGTTTCCCTTTTGTAGTATACCCAA</genome_strand>
        <mrna_strand>CACAACAACATAGAGTTGTTAATCATGTTGATGACAGCAACAGCACCTTGTTAGAACGCAGTGGAACTGCCAGCCAAATTTATGGTTATTCTCTGGCCCCGTCGGTATTGCATCAAACTGTTGCAGGCTCAATACATCAAAATGCTGTTGGCTCACTGGCAGGACCTGTGGGAGGTGTTGTGGCCATGGATGGAGCTGGAGAAGGTAATTTAGTGAAAGGAGGTTCATGTGTTGGAGTTCATGGAGGGACTCTAGTTGATCATACACCTAGTCAAATAGGAAGTCATACTGGTCAGTTATATGGACCCCCTGGTGATGCACACACCTATGCTTATAGGTCGCCATCCTACTTTGAAGCATCGGGCTCTATGGGGTTGCCAAACACCATGCCTGGTGATGCTTATAGGCCTCCACCATATTTGGAAGGCTCTATGGGGTTGCCAAACAACATACCGGGTGATGCTTATAGGCCAAACCAATACATGAAATGCTCCAACGGCTTGCAAAAAAACATATCTGGTGATGCTAATCAGCCTCCACCATACATGGAAGGCTCTGCACGGTTGCCAAACACCATACCTGCACCATATCAGTTTGCTGATTCTGTTCCATCTGCTGCCCTTGCTCATNCTTCACCCTNCTTGTACTGGAAGAGATAGTTTTGCATTGGGCAGGCATTATTTCTAACGTAGTTTCCCTTTTGTAGTATACCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419983" ref_strand="-" ref_description="SGN-E419983 [STM-30-D15]">
      <seq>gaattccattcaagattatcaaggaaagataaatgcatgtaagcagagaacaacagaagcacaatctgaagctgctgcagatgctgaaataaataagctgcagaaagagttagaacaggagatccagagagaacaactgctaagagaagaacttagagttataaccgatgagatcaatgatttagatcatcaaagagactctattgaggagcaaagaaaattgctcaagaaaattgagcaagatcagcttcgagctgagatgaagctatcactgtatgcctctgttacaagtatcatcccggacttgaatgatcaatccaaaatatcaggccatattgtggagagagataagaaggtggttgaaaatttcgagtttgattcatcaaatcagactgcctttgacacttgtaacaacatctggaagatgattaatttgtaagaagcagcattgcttaggcttagttatgacttgcattgttaagagtaccttaatcatactagatctcattgccattttgcattatagcgtgtttcatttgaagtacaatcttgtattttgtatatgatgtttgttgttccagaatccaaatcatttctaatgctttcacaagtccaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="29248" stop="18847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28936" g_stop="28791" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="158" r_length="144" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28790" i_stop="28703" i_length="88">
            <donor d_prob="0.356" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28702" g_stop="28603" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="258" r_length="100" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28602" i_stop="27435" i_length="1168">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27434" g_stop="27361" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="332" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27360" i_stop="27248" i_length="113">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.145" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27247" g_stop="26939" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="612" r_length="280" r_score="0.880"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26938" i_stop="26513" i_length="426">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.753" a_score="0.55"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26512" g_stop="26469" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="655" r_length="43" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E419983" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419983" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28936" e_stop="28791"/>
          <exon e_start="28702" e_stop="28603"/>
          <exon e_start="27434" e_stop="27361"/>
          <exon e_start="27247" e_stop="26939"/>
          <exon e_start="26512" e_stop="26469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGAGGCTGAAATAGATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTTAGAGAAGAACTTAGATAAGTATATTAAACAACGTTAGATGCATGAATTTGTATTTCTCAGATAATTTAGTGTTATGCTTACTGATTGACACCTTTTTTAAACACAGTTATAACCGATGAGATCAATGATTTAGATCGCCAAAGAGACTCTATTGAGGAGCACAGGAAATTGCTCAAGAAAATTGAGCAAGATCATCTTCGAGCTGAGTAAGTAATCATAACCTCTTGTACTTTAATATGTTTATGATTATGTCAGGCATTTGCTTCCAACATACTTCTACAAATTTCGTTGAAACAATCCCATCGTGGCATTTGTTGACTCCTCCTCATCCTCTAAGTTCAAACCGTGCCTGCTGGCCCTTGAGGTTTCTCGGTCATCAAAAAAGAAAAAGATATTGATATGTTGACTCGTTAAGCTTTTGCAACTTTATGCTGTCAAAGTATCTCAAGAGGTTGGGAGGGTCTGACATGTTTTCATCATATTCTGTGGATAATTTGCCTACTCAGTTCCATATTGCAACATGGTACACATATTTGAATGTATCTGCCATATGCCAATCACTGTTAAGATAGTCCATTAACATCCCATCTGGTGCGACCAAGTTCTACCACATTACATCTTTGGATGTCTAGGTGTAACTATCGCCCAACTAAGTATTTCTACAAATTGAATATACACCTGATTTGACTTTGTCTGGACGCAACCAAACATACCCCTCCTTCCCACTTTATGGGATACACTTTTCTTTTTAGCCCGTTCCGAAAAGAATAACACATTTCTAAATTTGTAAACAATTAACTTTACACTTCCCATTTGACCCTTAATGAAAAGCTTTTATGACCATCCAGATTTTATGGCATTTTTAAGACCACAAGTTTCAAAAGTTCTATAGACACAAATGTTATGACATGTTTAAGACCACAAGTTTAGGAAGTCTTGATTTCTCTTTTAAACTCTATGACTATTCAAACTATATCACCTAATTTTGGAACTGAAGGAGTAGTAATTTTTTAAGGTTTACCTCTGCTGCAGTTTTACATGAACATCATGCGAGGATTGAAATTTATTAGACGTTTTACTTTTTTTCTTTAGAAGCTTACACTCTGTAGACACACAGCCGCTCGCAGAATATCCTGTTGCAGGGATACCAGTGTTTTTATCCAGAAAGTTCCTTTTCCTCTTTCTTTCTCTTTAAAATGCTTAGTATGAAAGTTTTATTCCCAGTGTGCGATTGATGTTTGGTAATTTGTGTTAATATTTAGTGTGATCTTTCCTTGTCTCTCTCTAGCTACTATTGTTTGTAATGCATCTTCTTTAAGGGCTGTTTCACGTATATTGTTTAATTTTGAGCAATTTTCTCATCTTATTTTGTAGGATGAAGCTATCACTGTATGCTTCTGTCACAAGTATCATCCCGGACTTGGATGATCAATCCAAAATATCAGGCCGTATCCTAATTACTTTGTTTGCTAAGCTAACATTTCTTATCCTTTTCTAAATTCACCTTGTGTCTGTTTTTTCGAGATTGTGCAGCAATTTAGTTCACCTTGACCTATTCTAGATATTGTGGAGAGAGATAAGAAGGTGGTTGAAAATTTCGAGTTTGATTCATCAAATCAAACTGCCTTTGACACTTGTAACAACATCTGGAAGATGATTAATTTGTAAGAAGCAGCATTGCTCAGGCTTAGTTATGACTTGCATTGTTAAGAGTACCTTATTGCCTTTGCTGATCAGATTTTTAATCTAATCATACTAGATATCATTGCCATTTTGCATTATAGTGTGTTTCATTTGAAGTATAATCTTGTATTTTGTACATGATATTTGTTGTTTCAGAATCCAAATCATTTCTAATGCTTTCACAAGTCTCAGTCTGTAAAGTTATAAATTGGAGAAAATCAACTAATAACATTTGCTAGGTAGCAAAATCCAATTTGCAACATTGATATGTAACTGCGCAAGCTTTTCTCAATATTCCATCATCATTCCATTACATTGAAAGAATTGCTCACATATTTCACCACACTAAATACAGCAACAGTATGATAAGAGAGTCGAGCTAGCACGTTAAACATTATGAAGATTTTATACCTCATATGGCCATTCAAGCAATTGTAAAAGTACAAAATGCATTGTGGAGATCAATAGGAAGCTGTAAGATTTTACATAAATGTTACAAGAAAGAAATATGCTACAAATTCTCATATGACTATATCTGGGGCATTGCTGATATCCCAATTTCAATTCATACATAATAGTTGATCTGTTGTCTCTCTTATACATCTCATTCAAGCCAAAAGTCACAAATGCTGTGTAAAAAACAGTGGAAACAGATGC</genome_strand>
        <mrna_strand>ATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGATGCTGAAATAAATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTAAGAGAAGAACTTAG--AG........................................................................................TTATAACCGATGAGATCAATGATTTAGATCATCAAAGAGACTCTATTGAGGAGCAAAGAAAATTGCTCAAGAAAATTGAGCAAGATCAGCTTCGAGCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGCTATCACTGTATGCCTCTGTTACAAGTATCATCCCGGACTTGAATGATCAATCCAAAATATCAGGCC.................................................................................................................ATATTGTGGAGAGAGATAAGAAGGTGGTTGAAAATTTCGAGTTTGATTCATCAAATCAGACTGCCTTTGACACTTGTAACAACATCTGGAAGATGATTAATTTGTAAGAAGCAGCATTGCTTAGGCTTAGTTATGACTTGCATTGTTAAGAG-----TA---------C----C----------T-TAATCATACTAGATCTCATTGCCATTTTGCATTATAGCGTGTTTCATTTGAAGTACAATCTTGTATTTTGTATATGATGTTTGTTGTTCCAGAATCCAAATCATTTCTAATGCTTTCACAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAA-AAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614547" ref_strand="+" ref_description="SGN-E614547 [64335]">
      <seq>ggggcctgaacagtcgaaaatggtggatgggtcgaataacgtggatgtagagaagttgatctccttcaggtaaggatcttgttcagttcttgaaagaagataaagatgtcagcttcttgaaacagtgtaaagagcaatctaatgcccttcaatcacactgccacactgagcaccaggcccttcagaattccattcaagattatcaaggaaagataggtgcatgtaagcagagaacaacagaagcacaatctgaagctgctgcagatgctgaaataaataagctgcagaaagagttagaacaggagatccagagagaacaactgctaagagaagaacttagagttataaccgatgagatcaatgatttagatcgtcaaagagactctattgaggagcaaaggaaattgctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="31085" stop="28332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30787" g_stop="30590" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30589" i_stop="28937" i_length="1653">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28936" g_stop="28791" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="342" r_length="144" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28790" i_stop="28703" i_length="88">
            <donor d_prob="0.356" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28702" g_stop="28632" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="413" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E614547" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30787" e_stop="30590"/>
          <exon e_start="28936" e_stop="28791"/>
          <exon e_start="28702" e_stop="28632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCTGGAGAGGTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGCTGATCTCCTTCA-GTAAGGATCTTGTTCAGTTTTTGAAAGAAGATAAAGATGTCAGCTTCTTGAATCAGTGTAAAGAGCAATTTAATGCCCTTCAATCACACTGCCAATCTGAGTACCAGGCTCTTCAGAATTCCATTCAAGGTGGGGTTCTTGTATTTCGTTTTTAATTTTGTAAAATTGAGGGTTTGTTGAATTTCTTAGTGGCTTAAAGTTTGAATCTTTCTCAGTTGGAGATCTCCCCAATCCTCAGAGTCATAAGACTATGTGATAAAGAATAAGTTAGCTTCAAGATTGAACCTTTGGAATTGTGTGTATAATGTTCTTACTGTTGAATTTTGATATTTTTGTTTTGGAAATGGTAGGATGGTTACTAAGTGAACCTCTTTCTGTGTTTACTTGAAGCATTTGGCCATGAAAATTGTGAGTATTTGAAAATTGGAGTTGGGTTTGGCCATGAATACAAATTCTGGGTTGTTTCTGAATTTTTATGATTGATTTGGAGTGAAGAAAGTTTTTGGTGTTTTTCAAATTCTTGAAAATGCAAGTTGAATTTTATGGCCAAATGCTCCCTTAGCTAATGGATTATCCCAAGAGACAACCTACTGGTCAGGAGGTTACAATTTAAGCTGCAGATCTCGGTGGTGTCACTCATACTAGCTTAGTAGTGCCTGACTGGACCTTCCCTACTTCCTATGAACAATGTGAGAGAGAAAAAACATTGGCTTAAAGATTGCAACTTTTAATCTGATATAGACTGAGTTTACAATGTGCTTTGCTGTTTAATGCAGTTTCTTTACTCCTCGTAGCACTTCTGCTTTATAGATACTTCTTTACACTTGAAACCTTGCTTTTTAGTGATATCTTTTTTGGATGTTTCATTCAGTAACATTCCTTTAATGAAAGAGAAAAATGGGGGTTGAATCAACTTCTTATTAGTTTAATTAGTTTAAAGATTGAACCCAAGGGACATCTGCCTTGAGGCTGTAAGTTGAACCACAGTGCATAGTTCAAACCTCAGGGTCACCACGACGCAATAGGATCTTCCTGGATCCTTAAAAACTATGTAGTGAAAAAAAAACTCGGCGTAAGATTGGAATTTTGAATCAATGTAGACAAACTTTACAATGTTCTTGCATCTGGATGATTCTTTTTCTTAGTACCAATTATTAGTGGATAAGTCTCTTAACGTTGACCTGAAACACCATTTTCTGTTTGCTAGCTTACTGGAGTGTCAGGTCAAAATTTCTTCTTGCAAAATATCGTCATTTCTGGATGTTTCTTTTATTAGTAACATTTTGGGGAGTGTGGAGTCTCTGTCTCTGTCTTTTATACCTTCATGAGTACTACTGCTGGAATCTGGATCCTCTCACGCCAACCCTCATGAGATTTTTTTGGAATGTACTATATATAGTGTAAAAATTGGTGCTATTACCTACTTATTCCTGATAGTTTTGGTGATATTTCTACTTTTGGTGCAGTTTGTTTCCGAGTTGAAGTCCTTTTAGCCAATTATAATGCAAAAATATGTAGAGGCCCAGTACGTGTGTCTAGTTTAATGATTAGCTCAACAGACCACTACTTTGGTTCCTTTCGAGGGCCCAACCCTGCTCCTATGATTTCTCTCTGGCCTCAGACATACATGTTGTTTTTCTTATTAAATAAGTTGGAAATTGGAATTATGTTGGTATTAAGTGTCTTTGTTCAAGCATTAATTTATGATTGTACTGGGAGATGTTCGGATTTGTGAATTTGAAAGTATTAAATGACTAATTTCAAGTCATTGCATACACTCAGATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGAGGCTGAAATAGATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTTAGAGAAGAACTTAGATAAGTATATTAAACAACGTTAGATGCATGAATTTGTATTTCTCAGATAATTTAGTGTTATGCTTACTGATTGACACCTTTTTTAAACACAGTTATAACCGATGAGATCAATGATTTAGATCGCCAAAGAGACTCTATTGAGGAGCACAGGAAATTGCTCAAG</genome_strand>
        <mrna_strand>GGGGCCTGAACA-GTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGTTGATCTCCTTCAGGTAAGGATCTTGTTCAGTTCTTGAAAGAAGATAAAGATGTCAGCTTCTTGAAACAGTGTAAAGAGCAATCTAATGCCCTTCAATCACACTGCCACACTGAGCACCAGGCCCTTCAGAATTCCATTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAAGGAAAGATAGGTGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGATGCTGAAATAAATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTAAGAGAAGAACTTAG--AG........................................................................................TTATAACCGATGAGATCAATGATTTAGATCGTCAAAGAGACTCTATTGAGGAGCAAAGGAAATTGCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316630" ref_strand="+" ref_description="SGN-E316630 [cTOB-7-F13]">
      <seq>acgggagggaggagttctatttttctgtgaactccgctaatcattcttcttttcaaattactacattcggagggagaaaaaagccctaaactttggtctggagaggtcgaaaatggtggatgggtcgaataacgtggatgtagagaagctgatctccttcaataaggatcttgttcagtttttgaaagaagataaatatgtcagcttcttgaatcagtgtaaagagcaatttaatgcccttcaatcacactgccaatctgagtaccaggctcttcagaattccattcaagattatcaaggaaagataaatgcatgtaagcagagaacaacagaagcacattctgaagctgctgcagaggctgaaatagataagctgcagaaagagttagaacaggagatccagagagaacaactgcttagagaagaacttacagttataaccgatgagatcaatgatttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="31179" stop="28375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30879" g_stop="30590" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30589" i_stop="28937" i_length="1653">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28936" g_stop="28791" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="434" r_length="144" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28790" i_stop="28703" i_length="88">
            <donor d_prob="0.356" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28702" g_stop="28675" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="462" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E316630" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30879" e_stop="30590"/>
          <exon e_start="28936" e_stop="28791"/>
          <exon e_start="28702" e_stop="28675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGGAGGGAGGAGTTCTATTTTTCTGTGAACTCCGCTAATCATTCTTCTTTTCAAATTACTACATTCGGAGGGAGAAAAAAGCCCTAAACTTTGGTCTGGAGAGGTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGCTGATCTCCTTCAGTAAGGATCTTGTTCAGTTTTTGAAAGAAGATAAAGATGTCAGCTTCTTGAATCAGTGTAAAGAGCAATTTAATGCCCTTCAATCACACTGCCAATCTGAGTACCAGGCTCTTCAGAATTCCATTCAAGGTGGGGTTCTTGTATTTCGTTTTTAATTTTGTAAAATTGAGGGTTTGTTGAATTTCTTAGTGGCTTAAAGTTTGAATCTTTCTCAGTTGGAGATCTCCCCAATCCTCAGAGTCATAAGACTATGTGATAAAGAATAAGTTAGCTTCAAGATTGAACCTTTGGAATTGTGTGTATAATGTTCTTACTGTTGAATTTTGATATTTTTGTTTTGGAAATGGTAGGATGGTTACTAAGTGAACCTCTTTCTGTGTTTACTTGAAGCATTTGGCCATGAAAATTGTGAGTATTTGAAAATTGGAGTTGGGTTTGGCCATGAATACAAATTCTGGGTTGTTTCTGAATTTTTATGATTGATTTGGAGTGAAGAAAGTTTTTGGTGTTTTTCAAATTCTTGAAAATGCAAGTTGAATTTTATGGCCAAATGCTCCCTTAGCTAATGGATTATCCCAAGAGACAACCTACTGGTCAGGAGGTTACAATTTAAGCTGCAGATCTCGGTGGTGTCACTCATACTAGCTTAGTAGTGCCTGACTGGACCTTCCCTACTTCCTATGAACAATGTGAGAGAGAAAAAACATTGGCTTAAAGATTGCAACTTTTAATCTGATATAGACTGAGTTTACAATGTGCTTTGCTGTTTAATGCAGTTTCTTTACTCCTCGTAGCACTTCTGCTTTATAGATACTTCTTTACACTTGAAACCTTGCTTTTTAGTGATATCTTTTTTGGATGTTTCATTCAGTAACATTCCTTTAATGAAAGAGAAAAATGGGGGTTGAATCAACTTCTTATTAGTTTAATTAGTTTAAAGATTGAACCCAAGGGACATCTGCCTTGAGGCTGTAAGTTGAACCACAGTGCATAGTTCAAACCTCAGGGTCACCACGACGCAATAGGATCTTCCTGGATCCTTAAAAACTATGTAGTGAAAAAAAAACTCGGCGTAAGATTGGAATTTTGAATCAATGTAGACAAACTTTACAATGTTCTTGCATCTGGATGATTCTTTTTCTTAGTACCAATTATTAGTGGATAAGTCTCTTAACGTTGACCTGAAACACCATTTTCTGTTTGCTAGCTTACTGGAGTGTCAGGTCAAAATTTCTTCTTGCAAAATATCGTCATTTCTGGATGTTTCTTTTATTAGTAACATTTTGGGGAGTGTGGAGTCTCTGTCTCTGTCTTTTATACCTTCATGAGTACTACTGCTGGAATCTGGATCCTCTCACGCCAACCCTCATGAGATTTTTTTGGAATGTACTATATATAGTGTAAAAATTGGTGCTATTACCTACTTATTCCTGATAGTTTTGGTGATATTTCTACTTTTGGTGCAGTTTGTTTCCGAGTTGAAGTCCTTTTAGCCAATTATAATGCAAAAATATGTAGAGGCCCAGTACGTGTGTCTAGTTTAATGATTAGCTCAACAGACCACTACTTTGGTTCCTTTCGAGGGCCCAACCCTGCTCCTATGATTTCTCTCTGGCCTCAGACATACATGTTGTTTTTCTTATTAAATAAGTTGGAAATTGGAATTATGTTGGTATTAAGTGTCTTTGTTCAAGCATTAATTTATGATTGTACTGGGAGATGTTCGGATTTGTGAATTTGAAAGTATTAAATGACTAATTTCAAGTCATTGCATACACTCAGATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGAGGCTGAAATAGATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTTAGAGAAGAACTTAGATAAGTATATTAAACAACGTTAGATGCATGAATTTGTATTTCTCAGATAATTTAGTGTTATGCTTACTGATTGACACCTTTTTTAAACACAGTTATAACCGATGAGATCAATGATTTAGA</genome_strand>
        <mrna_strand>ACGGGAGGGAGGAGTTCTATTTTTCTGTGAACTCCGCTAATCATTCTTCTTTTCAAATTACTACATTCGGAGGGAGAAAAAAGCCCTAAACTTTGGTCTGGAGAGGTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGCTGATCTCCTTCAATAAGGATCTTGTTCAGTTTTTGAAAGAAGATAAATATGTCAGCTTCTTGAATCAGTGTAAAGAGCAATTTAATGCCCTTCAATCACACTGCCAATCTGAGTACCAGGCTCTTCAGAATTCCATTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACATTCTGAAGCTGCTGCAGAGGCTGAAATAGATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTTAGAGAAGAACTT--ACAG........................................................................................TTATAACCGATGAGATCAATGATTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280075" ref_strand="-" ref_description="SGN-E280075 [cLEL-7-D24](-)">
      <seq>gcacgagggagttctatttttctgtgaactccgctaatcattcttcttttcaaattactacattcggagggagaaacaagccctaaactttggtctggagaggtcgaaaatggtggatgggtcgaataacgtggatgtagagaagctgatctccttcagtaaggatcttgttcagtttttgaaagaagataaagatgtcagcttcttgaatcagtgtaaagagcaatttaatgcccttcaatcacactgccaatctgagtaccaggctcttcagaattccattcaagattatcaaggaaagataaatgcatgtaagcagagaacaacagaagcacaatctgaagctgctgcagaggctgaaataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="31171" stop="28558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30876" g_stop="30590" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30589" i_stop="28937" i_length="1653">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28936" g_stop="28858" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="366" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E280075" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280075" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30876" e_stop="30590"/>
          <exon e_start="28936" e_stop="28858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGGAGGAGTTCTATTTTTCTGTGAACTCCGCTAATCATTCTTCTTTTCAAATTACTACATTCGGAGGGAGAAAAAAGCCCTAAACTTTGGTCTGGAGAGGTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGCTGATCTCCTTCAGTAAGGATCTTGTTCAGTTTTTGAAAGAAGATAAAGATGTCAGCTTCTTGAATCAGTGTAAAGAGCAATTTAATGCCCTTCAATCACACTGCCAATCTGAGTACCAGGCTCTTCAGAATTCCATTCAAGGTGGGGTTCTTGTATTTCGTTTTTAATTTTGTAAAATTGAGGGTTTGTTGAATTTCTTAGTGGCTTAAAGTTTGAATCTTTCTCAGTTGGAGATCTCCCCAATCCTCAGAGTCATAAGACTATGTGATAAAGAATAAGTTAGCTTCAAGATTGAACCTTTGGAATTGTGTGTATAATGTTCTTACTGTTGAATTTTGATATTTTTGTTTTGGAAATGGTAGGATGGTTACTAAGTGAACCTCTTTCTGTGTTTACTTGAAGCATTTGGCCATGAAAATTGTGAGTATTTGAAAATTGGAGTTGGGTTTGGCCATGAATACAAATTCTGGGTTGTTTCTGAATTTTTATGATTGATTTGGAGTGAAGAAAGTTTTTGGTGTTTTTCAAATTCTTGAAAATGCAAGTTGAATTTTATGGCCAAATGCTCCCTTAGCTAATGGATTATCCCAAGAGACAACCTACTGGTCAGGAGGTTACAATTTAAGCTGCAGATCTCGGTGGTGTCACTCATACTAGCTTAGTAGTGCCTGACTGGACCTTCCCTACTTCCTATGAACAATGTGAGAGAGAAAAAACATTGGCTTAAAGATTGCAACTTTTAATCTGATATAGACTGAGTTTACAATGTGCTTTGCTGTTTAATGCAGTTTCTTTACTCCTCGTAGCACTTCTGCTTTATAGATACTTCTTTACACTTGAAACCTTGCTTTTTAGTGATATCTTTTTTGGATGTTTCATTCAGTAACATTCCTTTAATGAAAGAGAAAAATGGGGGTTGAATCAACTTCTTATTAGTTTAATTAGTTTAAAGATTGAACCCAAGGGACATCTGCCTTGAGGCTGTAAGTTGAACCACAGTGCATAGTTCAAACCTCAGGGTCACCACGACGCAATAGGATCTTCCTGGATCCTTAAAAACTATGTAGTGAAAAAAAAACTCGGCGTAAGATTGGAATTTTGAATCAATGTAGACAAACTTTACAATGTTCTTGCATCTGGATGATTCTTTTTCTTAGTACCAATTATTAGTGGATAAGTCTCTTAACGTTGACCTGAAACACCATTTTCTGTTTGCTAGCTTACTGGAGTGTCAGGTCAAAATTTCTTCTTGCAAAATATCGTCATTTCTGGATGTTTCTTTTATTAGTAACATTTTGGGGAGTGTGGAGTCTCTGTCTCTGTCTTTTATACCTTCATGAGTACTACTGCTGGAATCTGGATCCTCTCACGCCAACCCTCATGAGATTTTTTTGGAATGTACTATATATAGTGTAAAAATTGGTGCTATTACCTACTTATTCCTGATAGTTTTGGTGATATTTCTACTTTTGGTGCAGTTTGTTTCCGAGTTGAAGTCCTTTTAGCCAATTATAATGCAAAAATATGTAGAGGCCCAGTACGTGTGTCTAGTTTAATGATTAGCTCAACAGACCACTACTTTGGTTCCTTTCGAGGGCCCAACCCTGCTCCTATGATTTCTCTCTGGCCTCAGACATACATGTTGTTTTTCTTATTAAATAAGTTGGAAATTGGAATTATGTTGGTATTAAGTGTCTTTGTTCAAGCATTAATTTATGATTGTACTGGGAGATGTTCGGATTTGTGAATTTGAAAGTATTAAATGACTAATTTCAAGTCATTGCATACACTCAGATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGAGGCTGAAATAGA</genome_strand>
        <mrna_strand>GCACGAGGGAGTTCTATTTTTCTGTGAACTCCGCTAATCATTCTTCTTTTCAAATTACTACATTCGGAGGGAGAAACAAGCCCTAAACTTTGGTCTGGAGAGGTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGCTGATCTCCTTCAGTAAGGATCTTGTTCAGTTTTTGAAAGAAGATAAAGATGTCAGCTTCTTGAATCAGTGTAAAGAGCAATTTAATGCCCTTCAATCACACTGCCAATCTGAGTACCAGGCTCTTCAGAATTCCATTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGAGGCTGAAATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322590" ref_strand="+" ref_description="SGN-E322590 [cTOB-26-A23]">
      <seq>agtgggcctggccccaagaatggtgagcaatatggtgcaccttttagagaagaggactggcttgatgatgagcgcctaaatgccaaagtctctgtacagccggagagcccgagagatcaggagaatactgcaaagaacattaatgtagttcctgatcctgatgatgcaattgaggaattgctgaagcgtccttttactgtagataacaattttgcattggagcagtttgttcaagaggaagatactgaaagcaccttgctaaatcagtcttcgagggatgtgaatttatacaatcattgtgctgtcgctgggccaagctgccagcagtataatgcgagggcgagctttgatctgacagagtcaggcacatcaccattacatttgcatgaggcaccagaagtctcatctgctccggtgaatcctgaaaagcccccatacgcggtggaagaggatttcttggaagattttttggagatggatgacctccttgttgtcgatccaaatgttcaaaactttgatcacggaaccccaaatggtcaagtctttgacaaacctgctggaaacctggagactctgcagtttgatgactttgatggcttatcagagtttgacctgtatcatgatgcaccttcacttnctgataatgtggggacaccagtagtgggggcaattgctgaaccatacatgaaacactttgtgaacggaatacatatcctgactncactacatacatgagcgctttccaaatgacatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="41806" stop="43164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42106" g_stop="42864" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E322590" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42106" e_stop="42864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGGCCTGGCCCCAAGAATGGTGAGCAATATGGTGCACCTTTTAGAGAAGAGGACTGGCTTGATGATGAGCGCCTAAATGCCAAAGTCTCTGTACAGCCGGAGAGCCCGAGAGATCAGGAGAATACTGCAAAGAACATTAATGTAGTTCCTGATCCTGATGATGCAATTGAGGAATTGCTGAAGCGTCCTTTTACTGTAGATAACAATTTTGCATTGGAGCAGTTTGTTCAAGAGGAAGATACTGAAAGCACCTTGCTAAATCAGTCTTCGAGGGATGTGAATTTATACAATCATTGTGCTGTCGCTGGGCCAAGCTGCCAGCAGTATAATGCGAGGGCGAGCTTTGATCTGACAGAGTCAGGCACATCACCATTACATTTGCATGAGGCACCAGAAGTCTCATCTGCTCCGGTGAATCCTGAAAAGCCCCCATACGCGGTGGAAGAGGATTTCTTGGAAGATTTTTTGGAGATGGATGACCTCCTTGTTGTCGATCCAAATGTTCAAAACTTTGATCACGGAACCCCAAATGGTCAAGTCTTTGACAAACCTGCTGGAAACCTGGAGACTCTGCAGTTTGATGACTTTGATGGCTTATCAGAGTTTGACCTGTATCATGATGCACCTTCACTTCTTGATAATGTGGGGACACCAGTAGTGGGGCAAATTGCTGAACCATACATGAACAACTTTGTGAACGGAATTACATATCCTGACTCAACTACATACATGAGCGCTTTCCAAAATGACATGATG</genome_strand>
        <mrna_strand>AGTGGGCCTGGCCCCAAGAATGGTGAGCAATATGGTGCACCTTTTAGAGAAGAGGACTGGCTTGATGATGAGCGCCTAAATGCCAAAGTCTCTGTACAGCCGGAGAGCCCGAGAGATCAGGAGAATACTGCAAAGAACATTAATGTAGTTCCTGATCCTGATGATGCAATTGAGGAATTGCTGAAGCGTCCTTTTACTGTAGATAACAATTTTGCATTGGAGCAGTTTGTTCAAGAGGAAGATACTGAAAGCACCTTGCTAAATCAGTCTTCGAGGGATGTGAATTTATACAATCATTGTGCTGTCGCTGGGCCAAGCTGCCAGCAGTATAATGCGAGGGCGAGCTTTGATCTGACAGAGTCAGGCACATCACCATTACATTTGCATGAGGCACCAGAAGTCTCATCTGCTCCGGTGAATCCTGAAAAGCCCCCATACGCGGTGGAAGAGGATTTCTTGGAAGATTTTTTGGAGATGGATGACCTCCTTGTTGTCGATCCAAATGTTCAAAACTTTGATCACGGAACCCCAAATGGTCAAGTCTTTGACAAACCTGCTGGAAACCTGGAGACTCTGCAGTTTGATGACTTTGATGGCTTATCAGAGTTTGACCTGTATCATGATGCACCTTCACTTNCTGATAATGTGGGGACACCAGTAGTGGGGGCAATTGCTGAACCATACATGAAACACTTTGTGAACGGAA-TACATATCCTGACTNCACTACATACATGAGCGCTTTCC-AAATGACATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372057" ref_strand="+" ref_description="SGN-E372057 [TUS-30-F20]">
      <seq>tggagcagtttgttcaagaggaagatactgaaagcaccttgctaaatcagtcttcgagggatgtgaatttatacaatcattgtgctgtcgctgggccaagctgccagcagtataatgcgagggcgagctttgatctgacagagtcaggcacatcaccattacatttgcatgaggcaccagaagtctcatctgctccggtgaatcctgaaaagcccccatacgcggtggaagaggatttcttggaagattttttggagatggatgacctccttgttgtcgatccaaatgttcaaaactttgatcacggaaccccaaatggtcaagtctttgacaaacctgctggaaacctggagactctgcagtttgatgactttgatggcttatcagagtttgacctgtatcatgatgcaccttcacttcttgataatgtggggacaccagtagtggggcaaattgctgaaccatacatgaacaactttgtgaacggaattacatatcctgactcaactacatacatgagcgctttccaaaatgacatgatgaacaaccagcagatgcgcttgaatcatgaaaatcagataaacaatcaattttggatgcatgatgaaagattcggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="42023" stop="43240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42323" g_stop="42940" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E372057" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42323" e_stop="42940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCAGTTTGTTCAAGAGGAAGATACTGAAAGCACCTTGCTAAATCAGTCTTCGAGGGATGTGAATTTATACAATCATTGTGCTGTCGCTGGGCCAAGCTGCCAGCAGTATAATGCGAGGGCGAGCTTTGATCTGACAGAGTCAGGCACATCACCATTACATTTGCATGAGGCACCAGAAGTCTCATCTGCTCCGGTGAATCCTGAAAAGCCCCCATACGCGGTGGAAGAGGATTTCTTGGAAGATTTTTTGGAGATGGATGACCTCCTTGTTGTCGATCCAAATGTTCAAAACTTTGATCACGGAACCCCAAATGGTCAAGTCTTTGACAAACCTGCTGGAAACCTGGAGACTCTGCAGTTTGATGACTTTGATGGCTTATCAGAGTTTGACCTGTATCATGATGCACCTTCACTTCTTGATAATGTGGGGACACCAGTAGTGGGGCAAATTGCTGAACCATACATGAACAACTTTGTGAACGGAATTACATATCCTGACTCAACTACATACATGAGCGCTTTCCAAAATGACATGATGAACAACCAGCAGATGCGCTTGAATCATGAAAATCAGATAAACAATCAATTTTGGATGCATGATGAAAGATTCGGCG</genome_strand>
        <mrna_strand>TGGAGCAGTTTGTTCAAGAGGAAGATACTGAAAGCACCTTGCTAAATCAGTCTTCGAGGGATGTGAATTTATACAATCATTGTGCTGTCGCTGGGCCAAGCTGCCAGCAGTATAATGCGAGGGCGAGCTTTGATCTGACAGAGTCAGGCACATCACCATTACATTTGCATGAGGCACCAGAAGTCTCATCTGCTCCGGTGAATCCTGAAAAGCCCCCATACGCGGTGGAAGAGGATTTCTTGGAAGATTTTTTGGAGATGGATGACCTCCTTGTTGTCGATCCAAATGTTCAAAACTTTGATCACGGAACCCCAAATGGTCAAGTCTTTGACAAACCTGCTGGAAACCTGGAGACTCTGCAGTTTGATGACTTTGATGGCTTATCAGAGTTTGACCTGTATCATGATGCACCTTCACTTCTTGATAATGTGGGGACACCAGTAGTGGGGCAAATTGCTGAACCATACATGAACAACTTTGTGAACGGAATTACATATCCTGACTCAACTACATACATGAGCGCTTTCCAAAATGACATGATGAACAACCAGCAGATGCGCTTGAATCATGAAAATCAGATAAACAATCAATTTTGGATGCATGATGAAAGATTCGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282946" ref_strand="+" ref_description="SGN-E282946 [cLER-17-K19]">
      <seq>tggagcagtttgttcaagaggaagatactgaaagcaccttgctaaatcagtcttcgagggatgtgaatttatacaatcattgtgctgtcgctgggccaagctgccagcagtataatgcgagggcgagctttgatctgacagagtcaggcacatcaccattacatttgcatgaggcaccagaagtctcatctgctccggtgaatcctgaaaagcccccatacgcggtggaagaggatttcttggaagattttttggagatggatgacctccttgttgtcgatccaaatgttcaaaactttgatcacggaaccccaaatggtcaagtctttgacaaacctgctggaaacctggagactctgcagtttgatgactttgatggcttatcagagtttgacctgtatcatgatgcaccttcacttcttgataatgtggggacaccagtagtggggcaaattgctgaaccatacatgaacaactttgtgaacggaattacatatnctgactcaactacatacatgagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="42023" stop="43145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42323" g_stop="42845" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E282946" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42323" e_stop="42845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCAGTTTGTTCAAGAGGAAGATACTGAAAGCACCTTGCTAAATCAGTCTTCGAGGGATGTGAATTTATACAATCATTGTGCTGTCGCTGGGCCAAGCTGCCAGCAGTATAATGCGAGGGCGAGCTTTGATCTGACAGAGTCAGGCACATCACCATTACATTTGCATGAGGCACCAGAAGTCTCATCTGCTCCGGTGAATCCTGAAAAGCCCCCATACGCGGTGGAAGAGGATTTCTTGGAAGATTTTTTGGAGATGGATGACCTCCTTGTTGTCGATCCAAATGTTCAAAACTTTGATCACGGAACCCCAAATGGTCAAGTCTTTGACAAACCTGCTGGAAACCTGGAGACTCTGCAGTTTGATGACTTTGATGGCTTATCAGAGTTTGACCTGTATCATGATGCACCTTCACTTCTTGATAATGTGGGGACACCAGTAGTGGGGCAAATTGCTGAACCATACATGAACAACTTTGTGAACGGAATTACATATCCTGACTCAACTACATACATGAGCGC</genome_strand>
        <mrna_strand>TGGAGCAGTTTGTTCAAGAGGAAGATACTGAAAGCACCTTGCTAAATCAGTCTTCGAGGGATGTGAATTTATACAATCATTGTGCTGTCGCTGGGCCAAGCTGCCAGCAGTATAATGCGAGGGCGAGCTTTGATCTGACAGAGTCAGGCACATCACCATTACATTTGCATGAGGCACCAGAAGTCTCATCTGCTCCGGTGAATCCTGAAAAGCCCCCATACGCGGTGGAAGAGGATTTCTTGGAAGATTTTTTGGAGATGGATGACCTCCTTGTTGTCGATCCAAATGTTCAAAACTTTGATCACGGAACCCCAAATGGTCAAGTCTTTGACAAACCTGCTGGAAACCTGGAGACTCTGCAGTTTGATGACTTTGATGGCTTATCAGAGTTTGACCTGTATCATGATGCACCTTCACTTCTTGATAATGTGGGGACACCAGTAGTGGGGCAAATTGCTGAACCATACATGAACAACTTTGTGAACGGAATTACATATNCTGACTCAACTACATACATGAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574562" ref_strand="+" ref_description="SGN-E574562 [34049]">
      <seq>gggccaagctgccagcagtataatgcgagggtaagctttgacctgacagagtcaggcgcatcaccattacatttgcacgaggtaccagaggtctcatctgctccggtgaatcctgtaaagcccccatatgtggtggaagaggatttcttggaagattttttggagatggatgacctccttgttgccgaaccaaatgttcaaaactttgatcatgaaacaccaaatggtcaagtctttgacaatcctgctggaaacctggagactctgcagtttgatgactttgatggcttatcagagttcgacctgtatcatgatgcaccttcacgtcttgataatgtggggacaccaacagtggggcaaattgctgaaccatacatgaacaactttgtgaacgggatataccctgattccactacatacatgagcactttccagaatgatatgatgaacaaccagcagatgcgcttgaatcatgaaaatcagataaacaatcaattctggatgcatgatgaaagattcgacgtcttcaaccccattgaaggagatcaatcagttgttgatcaagcatcttcaggtgtggtaaatgataataatatggcaattatcctatgggggctaatcagaatctagccaaaaagatgatggtacgcagtcgtggttctcctctaatgtgtgggattttcgtggattctataccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="42115" stop="43706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42415" g_stop="42991" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42992" i_stop="43279" i_length="288">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43280" g_stop="43401" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="695" r_length="121" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E574562" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42415" e_stop="42991"/>
          <exon e_start="43280" e_stop="43401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCCAAGCTGCCAGCAGTATAATGCGAGGGCGAGCTTTGATCTGACAGAGTCAGGCACATCACCATTACATTTGCATGAGGCACCAGAAGTCTCATCTGCTCCGGTGAATCCTGAAAAGCCCCCATACGCGGTGGAAGAGGATTTCTTGGAAGATTTTTTGGAGATGGATGACCTCCTTGTTGTCGATCCAAATGTTCAAAACTTTGATCACGGAACCCCAAATGGTCAAGTCTTTGACAAACCTGCTGGAAACCTGGAGACTCTGCAGTTTGATGACTTTGATGGCTTATCAGAGTTTGACCTGTATCATGATGCACCTTCACTTCTTGATAATGTGGGGACACCAGTAGTGGGGCAAATTGCTGAACCATACATGAACAACTTTGTGAACGGAATTACATATCCTGACTCAACTACATACATGAGCGCTTTCCAAAATGACATGATGAACAACCAGCAGATGCGCTTGAATCATGAAAATCAGATAAACAATCAATTTTGGATGCATGATGAAAGATTCGGCGTCTTCAACCCCATTGAAGGAGATCAATCAGTTGTTGATCAATCATCTTCAGGTATTCAAAGAACTCCATATAGCAATGCTGCTAGTTTTGCTTGGCTAATGCCATAATGTTATCATACTTCTCAGATTTGTATAAACACATTGTTTTATGTTATCTGACTTGCTTGAGCTCTTGAACAGATGGATGGTATTGAATAACCATGTCATCTTCAGTAAGGCAAGAACTCTTTTGCCCAAGTGGAAATGGGGGAGTTTGAGCCAAGCTTCAAGAGCTCGTCTGCTTTTAATATTGGTGTTAGATTTTTTTTTTCTAACTTTAGCAAGTTTTGGCAATGTTTAGGTGTGGTAAATGATAATAATATGGCAAATTATCCTATGGGCGCTAATCAAAATCTAGCCAAAAAGGATGATGGTACGCAGTCGTGGTTCTCCTCTAATTTGTGGG-CTTTCGTGGATTCTATA</genome_strand>
        <mrna_strand>GGGCCAAGCTGCCAGCAGTATAATGCGAGGGTAAGCTTTGACCTGACAGAGTCAGGCGCATCACCATTACATTTGCACGAGGTACCAGAGGTCTCATCTGCTCCGGTGAATCCTGTAAAGCCCCCATATGTGGTGGAAGAGGATTTCTTGGAAGATTTTTTGGAGATGGATGACCTCCTTGTTGCCGAACCAAATGTTCAAAACTTTGATCATGAAACACCAAATGGTCAAGTCTTTGACAATCCTGCTGGAAACCTGGAGACTCTGCAGTTTGATGACTTTGATGGCTTATCAGAGTTCGACCTGTATCATGATGCACCTTCACGTCTTGATAATGTGGGGACACCAACAGTGGGGCAAATTGCTGAACCATACATGAACAACTTTGTGAACGGGA-T--ATACCCTGATTCCACTACATACATGAGCACTTTCCAGAATGATATGATGAACAACCAGCAGATGCGCTTGAATCATGAAAATCAGATAAACAATCAATTCTGGATGCATGATGAAAGATTCGACGTCTTCAACCCCATTGAAGGAGATCAATCAGTTGTTGATCAAGCATCTTCAG................................................................................................................................................................................................................................................................................................GTGTGGTAAATGATAATAATATGGC-AATTATCCTATGGGGGCTAATCAGAATCTAGCCAAAAA-GATGATGGTACGCAGTCGTGGTTCTCCTCTAATGTGTGGGATTTTCGTGGATTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372056" ref_strand="+" ref_description="SGN-E372056 [TUS-30-F20](-)">
      <seq>gaaccatacatgaacaactttgtgaacggaattacatatcctgactcaactacatacatgagcgctttccaaaatgacatgatgaacaaccagcagatgcgcttgaatcatgaaaatcagataaacaatcaattttggatgcatgatgaaagattcggcgtcttcaaccccattgaaggagatcaatcagttgttgatcaatcatcttcaggtgtggtaaatgataataatatggcaaattatcctatgggcgctaatcaaaatctagccaaaaaggatgatggtacgcagtcgtggttctcctctaatttgtgggctttcgtggattctatacccacaactcctgcttcagctgctgaaagtgctcttgtagttaacagggcctttgagcgtatgtctagctttagtagaatgaaattaaatgtcgggaacatgaatgttgctgcaggtaatgcctctgcaacttcaagtagttctggcaaaggcaaatatggattatgttgtatttctttacttggagtactttgtgcattcttgtgggtggtaataggaacttctgctaaaatcgcggggacatagatgatattctcataaacatgtgcagagttttcttttgctatttatcatctggctttttgccagaatcaatggaaaggtgagcatatatcttacaaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="42481" stop="44046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42781" g_stop="42991" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42992" i_stop="43279" i_length="288">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43280" g_stop="43753" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="685" r_length="474" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E372056" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42781" e_stop="42991"/>
          <exon e_start="43280" e_stop="43753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCATACATGAACAACTTTGTGAACGGAATTACATATCCTGACTCAACTACATACATGAGCGCTTTCCAAAATGACATGATGAACAACCAGCAGATGCGCTTGAATCATGAAAATCAGATAAACAATCAATTTTGGATGCATGATGAAAGATTCGGCGTCTTCAACCCCATTGAAGGAGATCAATCAGTTGTTGATCAATCATCTTCAGGTATTCAAAGAACTCCATATAGCAATGCTGCTAGTTTTGCTTGGCTAATGCCATAATGTTATCATACTTCTCAGATTTGTATAAACACATTGTTTTATGTTATCTGACTTGCTTGAGCTCTTGAACAGATGGATGGTATTGAATAACCATGTCATCTTCAGTAAGGCAAGAACTCTTTTGCCCAAGTGGAAATGGGGGAGTTTGAGCCAAGCTTCAAGAGCTCGTCTGCTTTTAATATTGGTGTTAGATTTTTTTTTTCTAACTTTAGCAAGTTTTGGCAATGTTTAGGTGTGGTAAATGATAATAATATGGCAAATTATCCTATGGGCGCTAATCAAAATCTAGCCAAAAAGGATGATGGTACGCAGTCGTGGTTCTCCTCTAATTTGTGGGCTTTCGTGGATTCTATACCCACAACTCCTGCTTCAGCTGCTGAAAGTGCTCTTGTAGTTAACAGGGCCTTTGAGCGTATGTCTAGCTTTAGTAGAATGAAATTAAATGTCGGGAACATGAATGTTGCTGCAGGTAATGCCTCTGCAACTTCAAGTAGTTCTGGCAAAGGCAAATATGGATTATGTTGTATTTCTTTACTTGGAGTACTTTGTGCATTCTTGTGGGTGGTAATAGGAACTTCTGCTAAAATCGCGGGGACATAGATGATATTCTCATAAACATGTGCAGAGTTTTCTTTTGCTATTTATCATCTGGCTTTTTGCCAGAATCAATGGAAAGGTGAGCATATATCTTACAAATAATTGGAGA</genome_strand>
        <mrna_strand>GAACCATACATGAACAACTTTGTGAACGGAATTACATATCCTGACTCAACTACATACATGAGCGCTTTCCAAAATGACATGATGAACAACCAGCAGATGCGCTTGAATCATGAAAATCAGATAAACAATCAATTTTGGATGCATGATGAAAGATTCGGCGTCTTCAACCCCATTGAAGGAGATCAATCAGTTGTTGATCAATCATCTTCAG................................................................................................................................................................................................................................................................................................GTGTGGTAAATGATAATAATATGGCAAATTATCCTATGGGCGCTAATCAAAATCTAGCCAAAAAGGATGATGGTACGCAGTCGTGGTTCTCCTCTAATTTGTGGGCTTTCGTGGATTCTATACCCACAACTCCTGCTTCAGCTGCTGAAAGTGCTCTTGTAGTTAACAGGGCCTTTGAGCGTATGTCTAGCTTTAGTAGAATGAAATTAAATGTCGGGAACATGAATGTTGCTGCAGGTAATGCCTCTGCAACTTCAAGTAGTTCTGGCAAAGGCAAATATGGATTATGTTGTATTTCTTTACTTGGAGTACTTTGTGCATTCTTGTGGGTGGTAATAGGAACTTCTGCTAAAATCGCGGGGACATAGATGATATTCTCATAAACATGTGCAGAGTTTTCTTTTGCTATTTATCATCTGGCTTTTTGCCAGAATCAATGGAAAGGTGAGCATATATCTTACAAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594670" ref_strand="+" ref_description="SGN-E594670 [37926]">
      <seq>gttgatcaagcatcttcaggtgtggtaaatgataataatatggcaaattatcctatgggcgctaatcaaaatctagccaaaaaggatgatggtacgcagtcgtggttctcctctaatttgtgggctttcgtggattctatacccacaactcctgcttcagctgctgaaagtgctctagtagttaacagggcctttgagcgtatgtctagctttagtagaatgaaattaaatgtcgggaacatgaatgttgctgcaggtaatacctctgcaacttcaagtagttctggcaaagccaaatatggattatgttgtatttctttacttggagtactttgtgcattcttgtgggtgctaataggaacttctgctaaaatcgtggggacatagatatcctcataaacatgtgtagagttttcttttgctatttatcatctggcttcttgccagaatcaatggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="42969" stop="44022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42973" g_stop="42991" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42992" i_stop="43279" i_length="288">
            <donor d_prob="0.850" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43280" g_stop="43723" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="460" r_length="441" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E594670" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42973" e_stop="42991"/>
          <exon e_start="43280" e_stop="43723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCAATCATCTTCAGGTATTCAAAGAACTCCATATAGCAATGCTGCTAGTTTTGCTTGGCTAATGCCATAATGTTATCATACTTCTCAGATTTGTATAAACACATTGTTTTATGTTATCTGACTTGCTTGAGCTCTTGAACAGATGGATGGTATTGAATAACCATGTCATCTTCAGTAAGGCAAGAACTCTTTTGCCCAAGTGGAAATGGGGGAGTTTGAGCCAAGCTTCAAGAGCTCGTCTGCTTTTAATATTGGTGTTAGATTTTTTTTTTCTAACTTTAGCAAGTTTTGGCAATGTTTAGGTGTGGTAAATGATAATAATATGGCAAATTATCCTATGGGCGCTAATCAAAATCTAGCCAAAAAGGATGATGGTACGCAGTCGTGGTTCTCCTCTAATTTGTGGGCTTTCGTGGATTCTATACCCACAACTCCTGCTTCAGCTGCTGAAAGTGCTCTTGTAGTTAACAGGGCCTTTGAGCGTATGTCTAGCTTTAGTAGAATGAAATTAAATGTCGGGAACATGAATGTTGCTGCAGGTAATGCCTCTGCAACTTCAAGTAGTTCTGGCAAAGGCAAATATGGATTATGTTGTATTTCTTTACTTGGAGTACTTTGTGCATTCTTGTGGGTGGTAATAGGAACTTCTGCTAAAATCGCGGGGACATAGATGATATTCTCATAAACATGTGCAGAGTTTTCTTTTGCTATTTATCATCTGGCTTTTTGCCAGAATCAATGGAAAG</genome_strand>
        <mrna_strand>GTTGATCAAGCATCTTCAG................................................................................................................................................................................................................................................................................................GTGTGGTAAATGATAATAATATGGCAAATTATCCTATGGGCGCTAATCAAAATCTAGCCAAAAAGGATGATGGTACGCAGTCGTGGTTCTCCTCTAATTTGTGGGCTTTCGTGGATTCTATACCCACAACTCCTGCTTCAGCTGCTGAAAGTGCTCTAGTAGTTAACAGGGCCTTTGAGCGTATGTCTAGCTTTAGTAGAATGAAATTAAATGTCGGGAACATGAATGTTGCTGCAGGTAATACCTCTGCAACTTCAAGTAGTTCTGGCAAAGCCAAATATGGATTATGTTGTATTTCTTTACTTGGAGTACTTTGTGCATTCTTGTGGGTGCTAATAGGAACTTCTGCTAAAATCGTGGGGACAT--A-GATATCCTCATAAACATGTGTAGAGTTTTCTTTTGCTATTTATCATCTGGCTTCTTGCCAGAATCAATGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616305" ref_strand="+" ref_description="SGN-E616305 [66113]">
      <seq>cctatgggcgctaatcaaaatctagccaaaaaggatgatggtacgcagtcgtggttctcctctaatttgtgggctttcgtggattctatacccacaactcctgcttcagctgctgaaagtgctcttgtagttaacagggcctttgagcgtatgtctagctttagtagaatgaaattacatgtcgggaacatgaatgttgctgcaggtaatacctctgcaacttcaagtagttctggcaaagccaaatatggattatgttgtatttctttacttggagtactttgtgcattcttatgggtgctaataggaacttctgctaaaatcgtggggacatagatatcctcataaacatgtgtagagttttcttttgctatttatcatctggcttcttgccagaatcaatggaaagctgagcatatatcttacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="43012" stop="44044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43312" g_stop="43744" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E616305" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43312" e_stop="43744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATGGGCGCTAATCAAAATCTAGCCAAAAAGGATGATGGTACGCAGTCGTGGTTCTCCTCTAATTTGTGGGCTTTCGTGGATTCTATACCCACAACTCCTGCTTCAGCTGCTGAAAGTGCTCTTGTAGTTAACAGGGCCTTTGAGCGTATGTCTAGCTTTAGTAGAATGAAATTAAATGTCGGGAACATGAATGTTGCTGCAGGTAATGCCTCTGCAACTTCAAGTAGTTCTGGCAAAGGCAAATATGGATTATGTTGTATTTCTTTACTTGGAGTACTTTGTGCATTCTTGTGGGTGGTAATAGGAACTTCTGCTAAAATCGCGGGGACATAGATGATATTCTCATAAACATGTGCAGAGTTTTCTTTTGCTATTTATCATCTGGCTTTTTGCCAGAATCAATGGAAAGGTGAGCATATATCTTACAAAT</genome_strand>
        <mrna_strand>CCTATGGGCGCTAATCAAAATCTAGCCAAAAAGGATGATGGTACGCAGTCGTGGTTCTCCTCTAATTTGTGGGCTTTCGTGGATTCTATACCCACAACTCCTGCTTCAGCTGCTGAAAGTGCTCTTGTAGTTAACAGGGCCTTTGAGCGTATGTCTAGCTTTAGTAGAATGAAATTACATGTCGGGAACATGAATGTTGCTGCAGGTAATACCTCTGCAACTTCAAGTAGTTCTGGCAAAGCCAAATATGGATTATGTTGTATTTCTTTACTTGGAGTACTTTGTGCATTCTTATGGGTGCTAATAGGAACTTCTGCTAAAATCGTGGGGACAT--A-GATATCCTCATAAACATGTGTAGAGTTTTCTTTTGCTATTTATCATCTGGCTTCTTGCCAGAATCAATGGAAAGCTGAGCATATATCTTACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350909" ref_strand="+" ref_description="SGN-E350909 [cTOS-7-H15]">
      <seq>gagcttccacaagagatgcaacaacagttacttcgcttgcctgctgatttcgctggaaagctggcttcccgagtcgctgcaaggacgttaaagagggtattcttgtgaaatatttcagcttatcatggaaaaagcaagatattctatattggtactcctcacagaacattttggtttgtggattttccaattatcaatcaagcttgccagtcctaactcctaaatgaagagatcttggtcgattttatcttaaaaggcagagaagatcagttcttgaaactatgcatttgcaagaaatacagaagtctagaaatatatataggttgtacgaaatatagtatatatgaaggcaaaatgttgtaattctcctattacaatacactacttaaaaaaaaaaattcttgtaccattagactttagaactagctgaaatgtgccatttgtgcctggctggagaagggaaggaccgccttccccaaggaatatagcgttggactggctgattattttgctcgatgatgcatacactgagaccgacggcgttggccagacttctattacagagtgtttatgttgacagaaatggcatttgtctttcttttttagttattcacaagaacatacatacacattatgatccccatcgtgcagtctgagaaagaggtaaatgtaaacagaccttactctatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="46080" stop="44785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45781" g_stop="45085" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E350909" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45781" e_stop="45085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGTTGTACGAAATATAGTATATATGAAGGCAAAATGTTGTAATTCTCCTATTACAATACACTACTTAAAAAAAAAAATTCTTGTACCATTAGACTTTAGAACTAGCTGAAATGTGCCATTTGTGCCTGGCTGGAGAAGGGAAGAGACCGCCTTCCCCAAGGAATATAGCGTTGGACTGGCTGATTATTTTGCTCGATGATGCATACACTGAGACCGACGGCGTTGGCCAGACTTCTATTACAGAGTGTTTATGTTGACAGAAATGGCATTTGTCTTTCTTTTTAGTTTATTCACAAGAACCATACATACACATTATGATCCCATCGGTGCAGTCTGAGAAAGAGGTAAAATGTAAACAGACCTTACTCTATCTTTG</genome_strand>
        <mrna_strand>GAGCTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGTTGTACGAAATATAGTATATATGAAGGCAAAATGTTGTAATTCTCCTATTACAATACACTACTTAAAAAAAAAAATTCTTGTACCATTAGACTTTAGAACTAGCTGAAATGTGCCATTTGTGCCTGGCTGGAGAAGGGAAG-GACCGCCTTCCCCAAGGAATATAGCGTTGGACTGGCTGATTATTTTGCTCGATGATGCATACACTGAGACCGACGGCGTTGGCCAGACTTCTATTACAGAGTGTTTATGTTGACAGAAATGGCATTTGTCTTTCTTTTTTAGTTATTCACAAGAA-CATACATACACATTATGATCCCCATCGTGCAGTCTGAGAAAGAGGT-AAATGTAAACAGACCTTACTCTATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542638" ref_strand="+" ref_description="SGN-E542638 [TUS-64-A17](-)">
      <seq>ggcacccttatcagggaaattctacttgaggaattttctaagggtatggttgcacttggtgttgcaactgtcgattcagtaacaaatgcagttgcaactacattaaccgttctctccatcccaaccattcttcaatgactgatgaagatattactaatcttagaaatttgcaacgtctattactgttgatatcaggactccaagaaaatgagaaccccagcatgaaggttaatggagttagaacatccaacaagcagatgatatttttaaacggagcacctcttcagcaatttgaagctgtccaagaatatctacccctcctttcagttttacctgagcttccacaagagatgcaacaacagttacttcgcttgcctgctgatttcgctggaaagctggcttcccgagtcgctgcaaggacgttaaagagggtattcttgtgaaatatttcagcttatcatggaaaaagcaagatattctatattggtactcctcacagaacattttggtttgtggattttccaattatcaatcaagcttgccagtcctaactcctaaatgaagagatcttggtcgattttatcttaaaaggcagagaagatcagttcttgaaactatgcatttgcaagaaatacagaagtctagaaatatatataggttgtacgaaatatagtatatatgaaggcaaaatgttgtaattctcctattacaatacactacttaaaaaaaaaaattcttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="48507" stop="45068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48207" g_stop="48166" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48165" i_stop="47448" i_length="718">
            <donor d_prob="0.988" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47447" g_stop="47268" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="224" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47267" i_stop="46321" i_length="947">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46320" g_stop="46207" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="338" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46206" i_stop="45779" i_length="428">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45778" g_stop="45367" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="750" r_length="412" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E542638" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48207" e_stop="48166"/>
          <exon e_start="47447" e_stop="47268"/>
          <exon e_start="46320" e_stop="46207"/>
          <exon e_start="45778" e_stop="45367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCTTTATCAGGGAAATTCTACTTGAGGAATTTTCTAAGGTATGGACTCGTGTTTTAATATTACAAGGATGCAAGCAAACTTCTTAGGAATGCTCAGCACCTTATTTTTACTAAATTCAAACAGGTGATGAATACTATAATTGCTTAATTCTTTAGGAAGTTTCAGTTTCATTATGTTTAAGTCAATTTTTTTGAAGTCATCGGATTATTATGAATACTAACTGGTTTGAATTAGTAGCAGTCGTATCTGGTTGGTGTTTCTAATTCAGATATTTTTGACAATTGAGCGTTCTCATCTTTATTCTTTTCCAAAAAAAAAAAAATAGTTCCAGGAGAAGTACCTAGAAAAAATATAGAAAAAGGAAAGTTGAAGAGAGGTTTTGCTATCATGCTGGTGATTTGTGGATGAAAATGCAAGACCCAATACCTTTTAGAAAGTTAGAATCTGCTTAACCAGTGAACATGACATGGAAACTAAAAATATCAAGTGTAGTTCCAGAAATCGGTGCTTTTGATGTTGAGAGTATGCCTTCAGCAGTTTGAAGTGGTACCTAAATGCTAATGCGAGTAATATAGGAAACTCAAATTGGTGAATTGCCACTTCATGTTTGATGTTTTGAGAAGTAGCTAACGTAATTCCTTTTCTGTGTTTGTTGAGTTTCCGCTGGTGTATCCAAAATTTCCAAAAGTAGGGTGTACTGTCATTCAAGTCATCTGGTGGTTGTATTTGGAATTTACTATTTATCCCAATTTACAGGGTATGGTTGCACTTGGTGTTGCAACTGTCGATTCAGTAACAAATGCAGTTGCAACTACATT-ACCGTTCTCTCCATCCCAACCA-TCTTCAATGACTGATGAAGATATTACTAATCTTAGAAATTTGCAACGTCTATTACTGTTGATATCAGGACTCCAAGAAAATGAGAACCCCAGCATGGTAAGAGAATCTTGCTAATAAAATGAATGCATATAAAACCTTCATGATGTTAATTGCTCCTCCATTATGGGAAAATATCTGTAGAAAGTGTTGATATGGATTTGCATGCATGTTAATATTACCCTGTTTTCCACTTTTGATATTAGAGAGAGACTATCCACATTTTACTCCCATAACATGCATGTCTTCTCAAAGGGAAAACATTCAGATACATGAACAACTAGATATTGGAGCTTAGAGACACCAGAGAAAGCATCAGTTAAATGATTAGAATCCAGTAACTTAGTTACATTAGCTTGTTATCACATATCTTACATTTCTTTCGGAATGCCTTAATTTCTTTGCAAATATTTATGTGGCCCCCCTTAAATACCAATTGCTTGCGTTGCTTACTATTATGACACCACTCATCATATTTATTTCTTGATGCGTGCTAGAATATATATGGACAAATTTTCTTTGCCAGCTTAGAATGTCACTTCACATTATCACCAATACCCTTCAGGGTGGCCCAGTAGTTCGGGCTTGGGACTTCCATATTGGAGGGCTCAAGTTCGAAGCCAGCGAAAGCAAAGGGTTCGCCTTCTGGGTCGAGGGGTTACCTCTCCTATGTGGTTTGCAAGTTATTGCATAAGAGCGGGGGTTCAACCCTGTGCGTACCTTTGTAGCGGCTGCGGATTTCCCTTGTCATAAAAGAAAATTAAAATTATCACCAATTCTGGTCTCCAAGCTTCTAGGCTAGTTACTTATTCTGTGAATGGATAATCTCCCAGCTACTGAATTGTTATGCTATCTAATATCCATAAGTCCTGTGCATCTGTAATACTTGGTTTAACTACGGATACCCCATTATTGATCATTCATTCATTGCCAAATTGATGTTTATTGTTATTGCACGATTACTTGATATGTTAGTAAATTGTGGACTCCTAATTTATTCTTTGTAGAAGGTTAATGGAGTTAGAACATCCAACAAGCAGATGATATTTTTAAACGGAGCACCTCTTCAGCAATTTGAAGCTGTCCAAGAATATCTACCCCTCCTTTCAGTTTTACCTGAGGTAAAGCTCACGAGATTTATTATCTCCATGATACAAAACCAATTTTATGATTGGTCGCATTTGTATGATAGAATTTTAATCCAGTCTTTGGATGGTGTTTATTGTTAAAAAAAAAATGCCATATGGGCTTTAACTTCAGAAAATTGAGCGCACAGCGCACCCCCTTTTTTACCTCCCTTACACTAAACATTATTTTCCACCAGTTACTTACGAAGCTGTACAAGTCTATTTTTGAGTGTGTGATTGCTCTCAGAGAAAAGGTGTACAGAGAATTTTGTAACGGTGATTATTCCATTTTGATGGCTTATATTTTCAAATTTGTCTTCTCATTACTGCCTTAATCAGCAAATGTATATACGGGTCAATTGGTATATAGATAGGCTTTGGAAACTAAACCAGCATTGAGAGTCTGACTTTATATTTTGCAGCTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGTTGTACGAAATATAGTATATATGAAGGCAAAATGTTGTAATTCTCCTATTACAATACACTACTTAAAAAAAAAAATTCTTGTACCATTAGAC</genome_strand>
        <mrna_strand>GGCACCCTTATCAGGGAAATTCTACTTGAGGAATTTTCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGGTTGCACTTGGTGTTGCAACTGTCGATTCAGTAACAAATGCAGTTGCAACTACATTAACCGTTCTCTCCATCCCAACCATTCTTCAATGACTGATGAAGATATTACTAATCTTAGAAATTTGCAACGTCTATTACTGTTGATATCAGGACTCCAAGAAAATGAGAACCCCAGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTTAATGGAGTTAGAACATCCAACAAGCAGATGATATTTTTAAACGGAGCACCTCTTCAGCAATTTGAAGCTGTCCAAGAATATCTACCCCTCCTTTCAGTTTTACCTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGTTGTACGAAATATAGTATATATGAAGGCAAAATGTTGTAATTCTCCTATTACAATACACTACTTAAAAAAAAAAATTCTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542639" ref_strand="+" ref_description="SGN-E542639 [TUS-64-A17]">
      <seq>ggcacccttatcagggaaattctacttgaggaattttctaagggtatggttgcacttggtgttgcaactgtcgattcagtaacaaatgcagttgcaactacattaccgttctctccatcccaaccatcttcaatgactgatgaagatattactaatcttagaaatttgcaacgtctattactgttgatatcaggactccaagaaaatgagaaccccagcatgaaggttaatggagttagaacatccaacaagcagatgatatttttaaacggagcacctcttcagcaatttgaagctgtccaagaatatctacccctcctttcagttttacctgagcttccacaagagatgcaacaacagttacttcgcttgcctgctgatttcgctggaaagctggcttcccgagtcgctgcaaggacgttaaagagggtattcttgtgaaatatttcagcttatcatggaaaaagcaagatattctatattggtactcctcacagaacattttggtttgtggattttccaattatcaatcaagcttgccagtcctaactcctaaatgaagagatcttggtcgattttatcttaaaaggcagagaagatcagttcttgaaactatgcatttgcaagaaatacagaagtctagaaatatatataggttgtacgaaatatagtatatatgaaggcaaaatgttgtaattctcctattacaatacactacttaaaaaaaaaaattcttggtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="48507" stop="45068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48207" g_stop="48166" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48165" i_stop="47448" i_length="718">
            <donor d_prob="0.988" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47447" g_stop="47268" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="222" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47267" i_stop="46321" i_length="947">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46320" g_stop="46207" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="336" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46206" i_stop="45779" i_length="428">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45778" g_stop="45368" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="748" r_length="412" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E542639" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48207" e_stop="48166"/>
          <exon e_start="47447" e_stop="47268"/>
          <exon e_start="46320" e_stop="46207"/>
          <exon e_start="45778" e_stop="45368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCTTTATCAGGGAAATTCTACTTGAGGAATTTTCTAAGGTATGGACTCGTGTTTTAATATTACAAGGATGCAAGCAAACTTCTTAGGAATGCTCAGCACCTTATTTTTACTAAATTCAAACAGGTGATGAATACTATAATTGCTTAATTCTTTAGGAAGTTTCAGTTTCATTATGTTTAAGTCAATTTTTTTGAAGTCATCGGATTATTATGAATACTAACTGGTTTGAATTAGTAGCAGTCGTATCTGGTTGGTGTTTCTAATTCAGATATTTTTGACAATTGAGCGTTCTCATCTTTATTCTTTTCCAAAAAAAAAAAAATAGTTCCAGGAGAAGTACCTAGAAAAAATATAGAAAAAGGAAAGTTGAAGAGAGGTTTTGCTATCATGCTGGTGATTTGTGGATGAAAATGCAAGACCCAATACCTTTTAGAAAGTTAGAATCTGCTTAACCAGTGAACATGACATGGAAACTAAAAATATCAAGTGTAGTTCCAGAAATCGGTGCTTTTGATGTTGAGAGTATGCCTTCAGCAGTTTGAAGTGGTACCTAAATGCTAATGCGAGTAATATAGGAAACTCAAATTGGTGAATTGCCACTTCATGTTTGATGTTTTGAGAAGTAGCTAACGTAATTCCTTTTCTGTGTTTGTTGAGTTTCCGCTGGTGTATCCAAAATTTCCAAAAGTAGGGTGTACTGTCATTCAAGTCATCTGGTGGTTGTATTTGGAATTTACTATTTATCCCAATTTACAGGGTATGGTTGCACTTGGTGTTGCAACTGTCGATTCAGTAACAAATGCAGTTGCAACTACATTACCGTTCTCTCCATCCCAACCATCTTCAATGACTGATGAAGATATTACTAATCTTAGAAATTTGCAACGTCTATTACTGTTGATATCAGGACTCCAAGAAAATGAGAACCCCAGCATGGTAAGAGAATCTTGCTAATAAAATGAATGCATATAAAACCTTCATGATGTTAATTGCTCCTCCATTATGGGAAAATATCTGTAGAAAGTGTTGATATGGATTTGCATGCATGTTAATATTACCCTGTTTTCCACTTTTGATATTAGAGAGAGACTATCCACATTTTACTCCCATAACATGCATGTCTTCTCAAAGGGAAAACATTCAGATACATGAACAACTAGATATTGGAGCTTAGAGACACCAGAGAAAGCATCAGTTAAATGATTAGAATCCAGTAACTTAGTTACATTAGCTTGTTATCACATATCTTACATTTCTTTCGGAATGCCTTAATTTCTTTGCAAATATTTATGTGGCCCCCCTTAAATACCAATTGCTTGCGTTGCTTACTATTATGACACCACTCATCATATTTATTTCTTGATGCGTGCTAGAATATATATGGACAAATTTTCTTTGCCAGCTTAGAATGTCACTTCACATTATCACCAATACCCTTCAGGGTGGCCCAGTAGTTCGGGCTTGGGACTTCCATATTGGAGGGCTCAAGTTCGAAGCCAGCGAAAGCAAAGGGTTCGCCTTCTGGGTCGAGGGGTTACCTCTCCTATGTGGTTTGCAAGTTATTGCATAAGAGCGGGGGTTCAACCCTGTGCGTACCTTTGTAGCGGCTGCGGATTTCCCTTGTCATAAAAGAAAATTAAAATTATCACCAATTCTGGTCTCCAAGCTTCTAGGCTAGTTACTTATTCTGTGAATGGATAATCTCCCAGCTACTGAATTGTTATGCTATCTAATATCCATAAGTCCTGTGCATCTGTAATACTTGGTTTAACTACGGATACCCCATTATTGATCATTCATTCATTGCCAAATTGATGTTTATTGTTATTGCACGATTACTTGATATGTTAGTAAATTGTGGACTCCTAATTTATTCTTTGTAGAAGGTTAATGGAGTTAGAACATCCAACAAGCAGATGATATTTTTAAACGGAGCACCTCTTCAGCAATTTGAAGCTGTCCAAGAATATCTACCCCTCCTTTCAGTTTTACCTGAGGTAAAGCTCACGAGATTTATTATCTCCATGATACAAAACCAATTTTATGATTGGTCGCATTTGTATGATAGAATTTTAATCCAGTCTTTGGATGGTGTTTATTGTTAAAAAAAAAATGCCATATGGGCTTTAACTTCAGAAAATTGAGCGCACAGCGCACCCCCTTTTTTACCTCCCTTACACTAAACATTATTTTCCACCAGTTACTTACGAAGCTGTACAAGTCTATTTTTGAGTGTGTGATTGCTCTCAGAGAAAAGGTGTACAGAGAATTTTGTAACGGTGATTATTCCATTTTGATGGCTTATATTTTCAAATTTGTCTTCTCATTACTGCCTTAATCAGCAAATGTATATACGGGTCAATTGGTATATAGATAGGCTTTGGAAACTAAACCAGCATTGAGAGTCTGACTTTATATTTTGCAGCTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGTTGTACGAAATATAGTATATATGAAGGCAAAATGTTGTAATTCTCCTATTACAATACACTACTTAAAAAAAAAAATTCTT-GTACCATTAGA</genome_strand>
        <mrna_strand>GGCACCCTTATCAGGGAAATTCTACTTGAGGAATTTTCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGGTTGCACTTGGTGTTGCAACTGTCGATTCAGTAACAAATGCAGTTGCAACTACATTACCGTTCTCTCCATCCCAACCATCTTCAATGACTGATGAAGATATTACTAATCTTAGAAATTTGCAACGTCTATTACTGTTGATATCAGGACTCCAAGAAAATGAGAACCCCAGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTTAATGGAGTTAGAACATCCAACAAGCAGATGATATTTTTAAACGGAGCACCTCTTCAGCAATTTGAAGCTGTCCAAGAATATCTACCCCTCCTTTCAGTTTTACCTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGTTGTACGAAATATAGTATATATGAAGGCAAAATGTTGTAATTCTCCTATTACAATACACTACTTAAAAAAAAAAATTCTTGGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699086" ref_strand="+" ref_description="SGN-E699086 [FA08CD08]">
      <seq>gggcattgctattggcatcaacccagaatacaaagtcctgggtagtacatacccatggattgctagaaaagtactaactgatagctcaccgaaactaaaagcttctttaagagcacttctttataaggatggtcagttcaggattgatcgactagagtctctcttatcagagtctctccgtgccaagacagaaagaaccctgatagagaatcaaaatggtgggattgattcgaaggtcattatcaagcaaattctttcttttacactggatgataagggtgcctttatcagggaaattctacttgaggaattttctaagggtatggttgcacttggtgttgcaactgtcgattcagtaacaaatgcagttgcaactacattaccgttctctccatcccaaccatcttcaatgactgatgaagatattactaatcttagaaatttgcaacgtctattactgttgatatcaggactccaagaaaatgagaaccccagcatgaaggttaatggagttagaacatccaacaagcagatgatatttttaaacggagcacctcttcagcaatttgaagctgtccaagaatatctacccctcctttcagttttacctgagcttccacaagagatgcaacaacagttacttcgcttgcctgctgatttcgctggaaagctggcttcccgagtcgctgcaaggacgttaaagagggtattcttgtgaaatatttcagcttatcatggaaaaagcaagatattctatattggtactcctcacagaacattttggtttgtggattttccaattatcaatcaagcttgccagtcctaactcctaaatgaagagatcttggtcgattttatcttaaaaggcagagaagatcagttcttgaaactatgcatttgcaagaaatacagaagtctagaaatatatatagggtgtaccaaatatagtatatatgaaggcaaaaggttgtaattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="49768" stop="45116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49468" g_stop="49342" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49341" i_stop="48669" i_length="673">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48668" g_stop="48624" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="172" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48623" i_stop="48428" i_length="196">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48427" g_stop="48323" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="277" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48322" i_stop="48208" i_length="115">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48207" g_stop="48166" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="319" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48165" i_stop="47448" i_length="718">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47447" g_stop="47268" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="499" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47267" i_stop="46321" i_length="947">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46320" g_stop="46207" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="613" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46206" i_stop="45779" i_length="428">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45778" g_stop="45406" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="986" r_length="373" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E699086" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>986</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49468" e_stop="49342"/>
          <exon e_start="48668" e_stop="48624"/>
          <exon e_start="48427" e_stop="48323"/>
          <exon e_start="48207" e_stop="48166"/>
          <exon e_start="47447" e_stop="47268"/>
          <exon e_start="46320" e_stop="46207"/>
          <exon e_start="45778" e_stop="45406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCATTGCTATTGGCATCAACCCAGAATACAAAGTCCTGGGTAGTACATACCCATGGATTGCTAGAAAAGTACTAACTGATAGCTCACCGAAACTAAAAGCTTCTTTAAGAGCACTTCTTTATAAGGTACACGCAAAAGAGGTCTCTCATTCTCTTTCTTAACACCTACTTGCAGCCTTCCTCTTGCTGAAGCAACTTGACAGACTTCTTACTAGTTCAGATTTCTGACCTCCATTTTGATTTTTGGTGCCACAGCCAAACCACTAACAATTATCCTTGCTAGTGGAGGAAAAAGTTATAAATCTTTAGTAGTCGACTAGTTGTATTCATGAATTCAAATGATTTAATTGGAAATGAATATTCAAGTATGTCACACTGTTCATTGTCCACAAAACGGAACTGTTTCTTCTTCGGCATGTTACAGAAACAATGGATTGTTTTATATGTTCAAAATGATGGGCAACAAGCTAGGTTCCCATCGTGTATGGATGTAGCTATGCTGGCAATGACTTTCTTTGCTATGCTGTTCTTTGCTGTTGTCATTATTAAACATAGTACTTGATACACGCTTGATTCCAACTAACTATGAATACTTTGAAGGGCCTCTCTTCTGAAAAGGAAATTGTAAGACTAATTTATTCACCGTTAGGTAGAGAAATATCAAACTTGAAGCCTGAGACAGTATACAGAAGTTTTACTGGTTGCCGATGCTATTCTACTTAAAAATTAATGATTTCAAGTTCAACTGTTTATGTAGTCATGATAAACTATAACTCCATGCTTTGAATTTTGATTATAGGATGGTCAGTTCAGGATTGATCGACTAGAGTCTCTCTTATCAGAGGTAAGCTTTTTGATATGTTTGTACACATCACTTTTGTATTTTGTAAGCATATACCTGACAGTTACAGAGTGAATGAAGCCACAGCTGAATTCTTGTTTTTCTTGATATTTGAGTTATATACGAGGAAATTGTTTCACCATATTAGCTTTTTGTTTCTGATATACAAGCGTAGATCCTGAATCTCTCTTCGTAACAGTCTCTCCGTGCCAAGACAGAAAGAACCCTGATAGAGAATCAAAATGGTGGGATTGATTCGAAGGTCATTATCAAGCAAATTCTTTCTTTTACACTGGATGATAAGGTATTCTATCTCAGAAAATATTGCACTTTCAAACAGACCAGAGGCTGGATACATCCAGGAAAAAGGGAAGAAAAAAATACGCACACTACTTATTAATTCATTTTTTTATCTTCAGGGTGCCTTTATCAGGGAAATTCTACTTGAGGAATTTTCTAAGGTATGGACTCGTGTTTTAATATTACAAGGATGCAAGCAAACTTCTTAGGAATGCTCAGCACCTTATTTTTACTAAATTCAAACAGGTGATGAATACTATAATTGCTTAATTCTTTAGGAAGTTTCAGTTTCATTATGTTTAAGTCAATTTTTTTGAAGTCATCGGATTATTATGAATACTAACTGGTTTGAATTAGTAGCAGTCGTATCTGGTTGGTGTTTCTAATTCAGATATTTTTGACAATTGAGCGTTCTCATCTTTATTCTTTTCCAAAAAAAAAAAAATAGTTCCAGGAGAAGTACCTAGAAAAAATATAGAAAAAGGAAAGTTGAAGAGAGGTTTTGCTATCATGCTGGTGATTTGTGGATGAAAATGCAAGACCCAATACCTTTTAGAAAGTTAGAATCTGCTTAACCAGTGAACATGACATGGAAACTAAAAATATCAAGTGTAGTTCCAGAAATCGGTGCTTTTGATGTTGAGAGTATGCCTTCAGCAGTTTGAAGTGGTACCTAAATGCTAATGCGAGTAATATAGGAAACTCAAATTGGTGAATTGCCACTTCATGTTTGATGTTTTGAGAAGTAGCTAACGTAATTCCTTTTCTGTGTTTGTTGAGTTTCCGCTGGTGTATCCAAAATTTCCAAAAGTAGGGTGTACTGTCATTCAAGTCATCTGGTGGTTGTATTTGGAATTTACTATTTATCCCAATTTACAGGGTATGGTTGCACTTGGTGTTGCAACTGTCGATTCAGTAACAAATGCAGTTGCAACTACATTACCGTTCTCTCCATCCCAACCATCTTCAATGACTGATGAAGATATTACTAATCTTAGAAATTTGCAACGTCTATTACTGTTGATATCAGGACTCCAAGAAAATGAGAACCCCAGCATGGTAAGAGAATCTTGCTAATAAAATGAATGCATATAAAACCTTCATGATGTTAATTGCTCCTCCATTATGGGAAAATATCTGTAGAAAGTGTTGATATGGATTTGCATGCATGTTAATATTACCCTGTTTTCCACTTTTGATATTAGAGAGAGACTATCCACATTTTACTCCCATAACATGCATGTCTTCTCAAAGGGAAAACATTCAGATACATGAACAACTAGATATTGGAGCTTAGAGACACCAGAGAAAGCATCAGTTAAATGATTAGAATCCAGTAACTTAGTTACATTAGCTTGTTATCACATATCTTACATTTCTTTCGGAATGCCTTAATTTCTTTGCAAATATTTATGTGGCCCCCCTTAAATACCAATTGCTTGCGTTGCTTACTATTATGACACCACTCATCATATTTATTTCTTGATGCGTGCTAGAATATATATGGACAAATTTTCTTTGCCAGCTTAGAATGTCACTTCACATTATCACCAATACCCTTCAGGGTGGCCCAGTAGTTCGGGCTTGGGACTTCCATATTGGAGGGCTCAAGTTCGAAGCCAGCGAAAGCAAAGGGTTCGCCTTCTGGGTCGAGGGGTTACCTCTCCTATGTGGTTTGCAAGTTATTGCATAAGAGCGGGGGTTCAACCCTGTGCGTACCTTTGTAGCGGCTGCGGATTTCCCTTGTCATAAAAGAAAATTAAAATTATCACCAATTCTGGTCTCCAAGCTTCTAGGCTAGTTACTTATTCTGTGAATGGATAATCTCCCAGCTACTGAATTGTTATGCTATCTAATATCCATAAGTCCTGTGCATCTGTAATACTTGGTTTAACTACGGATACCCCATTATTGATCATTCATTCATTGCCAAATTGATGTTTATTGTTATTGCACGATTACTTGATATGTTAGTAAATTGTGGACTCCTAATTTATTCTTTGTAGAAGGTTAATGGAGTTAGAACATCCAACAAGCAGATGATATTTTTAAACGGAGCACCTCTTCAGCAATTTGAAGCTGTCCAAGAATATCTACCCCTCCTTTCAGTTTTACCTGAGGTAAAGCTCACGAGATTTATTATCTCCATGATACAAAACCAATTTTATGATTGGTCGCATTTGTATGATAGAATTTTAATCCAGTCTTTGGATGGTGTTTATTGTTAAAAAAAAAATGCCATATGGGCTTTAACTTCAGAAAATTGAGCGCACAGCGCACCCCCTTTTTTACCTCCCTTACACTAAACATTATTTTCCACCAGTTACTTACGAAGCTGTACAAGTCTATTTTTGAGTGTGTGATTGCTCTCAGAGAAAAGGTGTACAGAGAATTTTGTAACGGTGATTATTCCATTTTGATGGCTTATATTTTCAAATTTGTCTTCTCATTACTGCCTTAATCAGCAAATGTATATACGGGTCAATTGGTATATAGATAGGCTTTGGAAACTAAACCAGCATTGAGAGTCTGACTTTATATTTTGCAGCTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGTTGTACGAAATATAGTATATATGAAGGCAAAATGTTGTAATTCTCCTATTACA</genome_strand>
        <mrna_strand>GGGCATTGCTATTGGCATCAACCCAGAATACAAAGTCCTGGGTAGTACATACCCATGGATTGCTAGAAAAGTACTAACTGATAGCTCACCGAAACTAAAAGCTTCTTTAAGAGCACTTCTTTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTCAGTTCAGGATTGATCGACTAGAGTCTCTCTTATCAGAG....................................................................................................................................................................................................TCTCTCCGTGCCAAGACAGAAAGAACCCTGATAGAGAATCAAAATGGTGGGATTGATTCGAAGGTCATTATCAAGCAAATTCTTTCTTTTACACTGGATGATAAG...................................................................................................................GGTGCCTTTATCAGGGAAATTCTACTTGAGGAATTTTCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGGTTGCACTTGGTGTTGCAACTGTCGATTCAGTAACAAATGCAGTTGCAACTACATTACCGTTCTCTCCATCCCAACCATCTTCAATGACTGATGAAGATATTACTAATCTTAGAAATTTGCAACGTCTATTACTGTTGATATCAGGACTCCAAGAAAATGAGAACCCCAGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTTAATGGAGTTAGAACATCCAACAAGCAGATGATATTTTTAAACGGAGCACCTCTTCAGCAATTTGAAGCTGTCCAAGAATATCTACCCCTCCTTTCAGTTTTACCTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGGTGTACCAAATATAGTATATATGAAGGCAAAAGGTTGTAATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301552" ref_strand="+" ref_description="SGN-E301552 [cLEW-23-D3]">
      <seq>gaattcggcacgaggggcacccttatcagggaaattctacttgaggaattttctaagggtatggttgcacttggtgttgcaactgtcgattcagtaacaaatgcagttgcaactacattaccgttctctccatcccaaccatcttcaatgactgatgaagatattactaatcttagaaatttgcaacgtctattactgttgatatcaggactccaagaaaatgagaaccccagcatgaaggttaatggagttagaacatccaacaagcagatgatatttttaaacggagcacctcttcagcaatttgaagctgtccaagaatatctacccctcctttcagttttacctgagcttccacaagagatgcaacaacagttacttcgcttgcctgctgatttcgctggaaagctggcttcccgagtcgctgcaaggacgttaaagagggtattcttgtgaaatatttcagcttatcatggaaaaagcaagatattctatattggtactcctcacagaacattttggtttgtggattttccaattatcaatcaagcttgccagtcctaactcctaaatgaagagatcttggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="48508" stop="45241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48207" g_stop="48166" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="57" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48165" i_stop="47448" i_length="718">
            <donor d_prob="0.988" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47447" g_stop="47268" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="237" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47267" i_stop="46321" i_length="947">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46320" g_stop="46207" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="351" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46206" i_stop="45779" i_length="428">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45778" g_stop="45541" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="589" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E301552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48207" e_stop="48166"/>
          <exon e_start="47447" e_stop="47268"/>
          <exon e_start="46320" e_stop="46207"/>
          <exon e_start="45778" e_stop="45541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCTTTATCAGGGAAATTCTACTTGAGGAATTTTCTAAGGTATGGACTCGTGTTTTAATATTACAAGGATGCAAGCAAACTTCTTAGGAATGCTCAGCACCTTATTTTTACTAAATTCAAACAGGTGATGAATACTATAATTGCTTAATTCTTTAGGAAGTTTCAGTTTCATTATGTTTAAGTCAATTTTTTTGAAGTCATCGGATTATTATGAATACTAACTGGTTTGAATTAGTAGCAGTCGTATCTGGTTGGTGTTTCTAATTCAGATATTTTTGACAATTGAGCGTTCTCATCTTTATTCTTTTCCAAAAAAAAAAAAATAGTTCCAGGAGAAGTACCTAGAAAAAATATAGAAAAAGGAAAGTTGAAGAGAGGTTTTGCTATCATGCTGGTGATTTGTGGATGAAAATGCAAGACCCAATACCTTTTAGAAAGTTAGAATCTGCTTAACCAGTGAACATGACATGGAAACTAAAAATATCAAGTGTAGTTCCAGAAATCGGTGCTTTTGATGTTGAGAGTATGCCTTCAGCAGTTTGAAGTGGTACCTAAATGCTAATGCGAGTAATATAGGAAACTCAAATTGGTGAATTGCCACTTCATGTTTGATGTTTTGAGAAGTAGCTAACGTAATTCCTTTTCTGTGTTTGTTGAGTTTCCGCTGGTGTATCCAAAATTTCCAAAAGTAGGGTGTACTGTCATTCAAGTCATCTGGTGGTTGTATTTGGAATTTACTATTTATCCCAATTTACAGGGTATGGTTGCACTTGGTGTTGCAACTGTCGATTCAGTAACAAATGCAGTTGCAACTACATTACCGTTCTCTCCATCCCAACCATCTTCAATGACTGATGAAGATATTACTAATCTTAGAAATTTGCAACGTCTATTACTGTTGATATCAGGACTCCAAGAAAATGAGAACCCCAGCATGGTAAGAGAATCTTGCTAATAAAATGAATGCATATAAAACCTTCATGATGTTAATTGCTCCTCCATTATGGGAAAATATCTGTAGAAAGTGTTGATATGGATTTGCATGCATGTTAATATTACCCTGTTTTCCACTTTTGATATTAGAGAGAGACTATCCACATTTTACTCCCATAACATGCATGTCTTCTCAAAGGGAAAACATTCAGATACATGAACAACTAGATATTGGAGCTTAGAGACACCAGAGAAAGCATCAGTTAAATGATTAGAATCCAGTAACTTAGTTACATTAGCTTGTTATCACATATCTTACATTTCTTTCGGAATGCCTTAATTTCTTTGCAAATATTTATGTGGCCCCCCTTAAATACCAATTGCTTGCGTTGCTTACTATTATGACACCACTCATCATATTTATTTCTTGATGCGTGCTAGAATATATATGGACAAATTTTCTTTGCCAGCTTAGAATGTCACTTCACATTATCACCAATACCCTTCAGGGTGGCCCAGTAGTTCGGGCTTGGGACTTCCATATTGGAGGGCTCAAGTTCGAAGCCAGCGAAAGCAAAGGGTTCGCCTTCTGGGTCGAGGGGTTACCTCTCCTATGTGGTTTGCAAGTTATTGCATAAGAGCGGGGGTTCAACCCTGTGCGTACCTTTGTAGCGGCTGCGGATTTCCCTTGTCATAAAAGAAAATTAAAATTATCACCAATTCTGGTCTCCAAGCTTCTAGGCTAGTTACTTATTCTGTGAATGGATAATCTCCCAGCTACTGAATTGTTATGCTATCTAATATCCATAAGTCCTGTGCATCTGTAATACTTGGTTTAACTACGGATACCCCATTATTGATCATTCATTCATTGCCAAATTGATGTTTATTGTTATTGCACGATTACTTGATATGTTAGTAAATTGTGGACTCCTAATTTATTCTTTGTAGAAGGTTAATGGAGTTAGAACATCCAACAAGCAGATGATATTTTTAAACGGAGCACCTCTTCAGCAATTTGAAGCTGTCCAAGAATATCTACCCCTCCTTTCAGTTTTACCTGAGGTAAAGCTCACGAGATTTATTATCTCCATGATACAAAACCAATTTTATGATTGGTCGCATTTGTATGATAGAATTTTAATCCAGTCTTTGGATGGTGTTTATTGTTAAAAAAAAAATGCCATATGGGCTTTAACTTCAGAAAATTGAGCGCACAGCGCACCCCCTTTTTTACCTCCCTTACACTAAACATTATTTTCCACCAGTTACTTACGAAGCTGTACAAGTCTATTTTTGAGTGTGTGATTGCTCTCAGAGAAAAGGTGTACAGAGAATTTTGTAACGGTGATTATTCCATTTTGATGGCTTATATTTTCAAATTTGTCTTCTCATTACTGCCTTAATCAGCAAATGTATATACGGGTCAATTGGTATATAGATAGGCTTTGGAAACTAAACCAGCATTGAGAGTCTGACTTTATATTTTGCAGCTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCG</genome_strand>
        <mrna_strand>GGCACCCTTATCAGGGAAATTCTACTTGAGGAATTTTCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGGTTGCACTTGGTGTTGCAACTGTCGATTCAGTAACAAATGCAGTTGCAACTACATTACCGTTCTCTCCATCCCAACCATCTTCAATGACTGATGAAGATATTACTAATCTTAGAAATTTGCAACGTCTATTACTGTTGATATCAGGACTCCAAGAAAATGAGAACCCCAGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTTAATGGAGTTAGAACATCCAACAAGCAGATGATATTTTTAAACGGAGCACCTCTTCAGCAATTTGAAGCTGTCCAAGAATATCTACCCCTCCTTTCAGTTTTACCTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481747" ref_strand="+" ref_description="SGN-E481747 [cSTD-19-I20]">
      <seq>tgcagatccacatcctggaaaccttcttcgtacttatgatgggaagctagcctacttagatttcggtatgatgggtgaattcaaacaagaatatcgtgatggtttcattgaagcatgtctccatctagtgaatcgtgattacagtgcattggccaaggattttgtcactcttgggcttattccgcccacaagtgacaaagctgcagttacagaagctctaacaggttttatcctttattttgacatttattagctatatacagttaaattctagacctagaaagtgatctaattgttgtattcttctttactgatataaaatttccgtttaggtgtttttcgggatgctgtagccaaaggagtccgcaatgtgagttttggggatcttctcggagatctgggattcaccatgtacaaatttaagtttcaaataccttcttatttctctcttgtcatccgaagccttgctgtgttggagggcattgctattggcatcaacccagaatacanagttctgggcagtacatacccatggattgctagaaaagtactaactgacagctcaccgaaactgaaagcttctttaagagcacttcttttataggatggtcagttcagggatgatcgactagagtctctcttatcagagtctctccgtgccaagacagaaagaaccctgatagaaaatcaaatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="52846" stop="48081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52546" g_stop="52488" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52487" i_stop="51599" i_length="889">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51598" g_stop="51484" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="174" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51483" i_stop="51396" i_length="88">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51395" g_stop="51160" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="411" r_length="237" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51159" i_stop="49662" i_length="1498">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49661" g_stop="49611" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="462" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49610" i_stop="49484" i_length="127">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.527" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49483" g_stop="49342" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="604" r_length="142" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49341" i_stop="48669" i_length="673">
            <donor d_prob="0.833" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48668" g_stop="48624" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="649" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48623" i_stop="48428" i_length="196">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.223" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48427" g_stop="48379" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="697" r_length="48" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E481747" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52546" e_stop="52488"/>
          <exon e_start="51598" e_stop="51484"/>
          <exon e_start="51395" e_stop="51160"/>
          <exon e_start="49661" e_stop="49611"/>
          <exon e_start="49483" e_stop="49342"/>
          <exon e_start="48668" e_stop="48624"/>
          <exon e_start="48427" e_stop="48379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATCCACATCCTGGAAACCTTCTTCGTACATATGACGGGAAACTAGCCTACTTAGGTACTTCATTGATTTTAGTTTCTAGTCTTATGCATGTAGGATATGGGTTATTTACTGAATAATCTTTTTTTACATGCTACTTCTCTGAATATATGCTTGTTACCTTATGGACTTTCTATTTTTCCAACATATGATGGTAACCTTTTGTTTTTCTATTTTCCCTTTTTTCTCTCTCACACCAACATTGGCTGCCTGTTTCTTAAGGAGATGGTTAAAACATCTACTTTGTTTATTACCATTAGCTATCCTCTAATGCTGGTTTTCAATACTGTTTAATAGCTCAAAAGGAAAATGCTGCTGGGAACTCGTGGTAGCTATCTTCCAGGAAACGCAAAGTAGTTTATTGAATATCTTATGTAGTTAATACATGAAACTGGTTGTTAGTGATGCTAAATAACAAACTTCTCTGGGTTGCTTTTGGTTGTTCCTCACGTTCTTTGTAATTTTATTTGTTAGTGCTATAATCTCACATCGGTTACATGTTCGGGATTTAGTCTCCTTATATCATCTTTGGATAATCCTCATCACTTAAGCTAGCTTTTAGGCTTAAGTTAAAAACTAAAGGTTATTTTCTCAACATAGTATTAGGGCCAACCCTATTGGTGATGTTGGGTTATCCAAATTTTGAACTACCCAAGTTATAATACTCCACGCGCCAGATGTCCGGTTTGAGGGAGAGGGGGGTAGAATTTCACATTGATTAACTGTGTTGGCTGTAATATGGTCTTGATAAATGCTCACCACTTGATCTAGCTTTGGGTTGAGCTTAGACCCAAGGTCCATTTTCTTAACAATTAGTCTCATGGAAATTTGATTACTTTATCCTAGTTGAGTACCTTATAGCTACCTATCATCAATTTGTTGTACCTAAAATTTCTCTTAATCCCAGATTTCGGTATGATGGGTGAATTCAAACAAGAATATCGTGATGGTTTCATTGAAGCATGTCTCCATCTAGTGAATCGTGATTACAGTGCATTGGCCAAGGATTTTGTCACTCTTGGGTATTATTAATATCTTCACTACTGAATGAGAGGTCACTTCTTGATATTAGAATTATTTAGTGTTGATACAATATATTATCATTGACAGGCTCATTCCGCCCACAAGTGACAAAGTTGCCGTTACAGAAGCCCTAACAGGTTTTTTCCTTTATATTGACA-TTATTAGCTATATACAGTTAAATTCTAGACCTAGAAAGTAATCTAGTTGTTGTATTCTTCTTTACTGATATGAATTTCCCCTTTAGGTGTTTTTCGGGATGCTGTAGCCAAAGGAGTCCGCAATGTGAGTTTTGGGGATCTTCTCGGAGATCTGGGATTCACCATGTAAGCTCTTTTCATGATTTCTTCTCTCCGACAGAAATTAAAATGTATTTTGTTTTCTGTATTACCTTCTATTATGTGATGTAATTTGGTGGTATTTCACTTATGCTTAAATCACATCTATCTTCTAAGTTGGTACAGAAGATGTATATTTTATGGAGTTTTCTATGATGAGGATAAGCCCAGAGGAGGGGGGACTTCTTTAAATAAAAACACAAGAAGGAAGCAACTTATTTGAACGATGTGTCTTAAGGCATTGATCTTAGTCTAATTCACCGAACATTATCTGATTGGTCAACCTTGATCTGGGTGATCTGATAGATTACTGAGATACTAATCCTTGTGCTTGTACCATCAAAATCTGAAGAGAGAATAGGCTTTGCCTGAATGCATAATGAAAAAGGAGGAACTAGTGAATAATGATAAACAGAATTAGAATTCCATTTGATGCTTATACTCCTTACATTAAATGTATGAACACGGTATCAGAAAAGTTTCATTTATGTTGAGTGATGATGTCATAATAGATTTTTTGGTTTTAATTTTTTTATTATTTCATTGCTAAATGATATCCACAATAAGAAACCATCCTAGTTAACCTTAATGGCTCTTTTGATTATTGAAGAATGCAAAGCTTTAACAGCATATGCTGACACTCTCTCGGGTAGATGACCACCGCTTTCAGTAATCATCCAGAGAAGAAGTAATATCTCGGGTAGGTAGTTTATAATGTGATGAATAAATTACTTTGATAATGAAAAAGAATTATTTTCTTAAAATGCCACCAAAGGGTTGGGTTATCAGTTTGAAAAGTTGGAGTGACAACCTTAGGAAATTCAGCAGACTCAAAATTAGTGAGTTCTTCTCATTTGCATAAACTGTGAGAGAAGGGTTTAACTGGTGGGACATAGTAGGTATTGGTGGATTAATTGAGTGAATACAAGCAGGCTGGGATACCCGCTGTTGAAAAAAGCTTCTTGGTGAAGTAATGCTTGGTCCACTGCTAGAAGGTCATTCAACTGGGGACTTTGCTTTCTTTTGCTTATGCCATGCATCATCCCTCCAATTGCAGAATCAGATTTATTTAATTTTGTCTCAGTCTGATGCTTATCTAGAATCTTTCTGGTCTCATTATCTTCTTCTTTTGGATGATGTATGGATATGCAAAGAGTTTGAGGTCATAGAAGTAGTCTTCTCGTTCTCACTATTGATCAACTTTCCACATCAGTAGTACTAAAGGTTTTGGTCATTGCTGTGTCGAGATGAAGGGGTTCTTCAATCATCTCTGGAAACCAAAGTTTTACCATGGGGAGTTGTGTGCATGTTGCACGTTAACATCTGGGGAACCTTGGCATTCATGTTGAAATCACTGATGATTATGTTTAGAGAGTCTTTGTTGTCTCGATAAGGCTTTAGCAGATATATGATTTTTCTTATGATGACTCTATATGATTATGATTTGTATTTTTCTGATAAGTTTTGCGGAACTCTTTGATTACAGGTACAAATTTAAGTTTCAAATACCTTCTTATTTCTCTCTTGTCATCCGAAGGTAATTTTGCGTGAAAAGTTTCTCAACAAAAAGAATTATTAGAGATTAATTTTTGTTTTGTATTTGCTTGATCTCGTTTATTTTGTTGGTGGCTGATGATTTTCACTGGTAATTTTGAGACATCTAGCCTTGCTGTGTTGGAGGGCATTGCTATTGGCATCAACCCAGAATACAAAGTCCTGGGTAGTACATACCCATGGATTGCTAGAAAAGTACTAACTGATAGCTCACCGAAACTAAAAGCTTCTTTAAGAGCACTTCTTTATAAGGTACACGCAAAAGAGGTCTCTCATTCTCTTTCTTAACACCTACTTGCAGCCTTCCTCTTGCTGAAGCAACTTGACAGACTTCTTACTAGTTCAGATTTCTGACCTCCATTTTGATTTTTGGTGCCACAGCCAAACCACTAACAATTATCCTTGCTAGTGGAGGAAAAAGTTATAAATCTTTAGTAGTCGACTAGTTGTATTCATGAATTCAAATGATTTAATTGGAAATGAATATTCAAGTATGTCACACTGTTCATTGTCCACAAAACGGAACTGTTTCTTCTTCGGCATGTTACAGAAACAATGGATTGTTTTATATGTTCAAAATGATGGGCAACAAGCTAGGTTCCCATCGTGTATGGATGTAGCTATGCTGGCAATGACTTTCTTTGCTATGCTGTTCTTTGCTGTTGTCATTATTAAACATAGTACTTGATACACGCTTGATTCCAACTAACTATGAATACTTTGAAGGGCCTCTCTTCTGAAAAGGAAATTGTAAGACTAATTTATTCACCGTTAGGTAGAGAAATATCAAACTTGAAGCCTGAGACAGTATACAGAAGTTTTACTGGTTGCCGATGCTATTCTACTTAAAAATTAATGATTTCAAGTTCAACTGTTTATGTAGTCATGATAAACTATAACTCCATGCTTTGAATTTTGATTATAGGATGGTCAGTTCAGGATTGATCGACTAGAGTCTCTCTTATCAGAGGTAAGCTTTTTGATATGTTTGTACACATCACTTTTGTATTTTGTAAGCATATACCTGACAGTTACAGAGTGAATGAAGCCACAGCTGAATTCTTGTTTTTCTTGATATTTGAGTTATATACGAGGAAATTGTTTCACCATATTAGCTTTTTGTTTCTGATATACAAGCGTAGATCCTGAATCTCTCTTCGTAACAGTCTCTCCGTGCCAAGACAGAAAGAACCCTGATAGAGAATCAAAATGGTG</genome_strand>
        <mrna_strand>TGCAGATCCACATCCTGGAAACCTTCTTCGTACTTATGATGGGAAGCTAGCCTACTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGGTATGATGGGTGAATTCAAACAAGAATATCGTGATGGTTTCATTGAAGCATGTCTCCATCTAGTGAATCGTGATTACAGTGCATTGGCCAAGGATTTTGTCACTCTTGG........................................................................................GCTTATTCCGCCCACAAGTGACAAAGCTGCAGTTACAGAAGCTCTAACAGGTTTTATCCTTTATTTTGACATTTATTAGCTATATACAGTTAAATTCTAGACCTAGAAAGTGATCTAATTGTTGTATTCTTCTTTACTGATATAAAATTTCCGTTTAGGTGTTTTTCGGGATGCTGTAGCCAAAGGAGTCCGCAATGTGAGTTTTGGGGATCTTCTCGGAGATCTGGGATTCACCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAATTTAAGTTTCAAATACCTTCTTATTTCTCTCTTGTCATCCGAAG...............................................................................................................................CCTTGCTGTGTTGGAGGGCATTGCTATTGGCATCAACCCAGAATACANAGTTCTGGGCAGTACATACCCATGGATTGCTAGAAAAGTACTAACTGACAGCTCACCGAAACTGAAAGCTTCTTTAAGAGCACTTCTTTTATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTCAGTTCAGGGATGATCGACTAGAGTCTCTCTTATCAGAG....................................................................................................................................................................................................TCTCTCCGTGCCAAGACAGAAAGAACCCTGATAGAAAATC-AAATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246644" ref_strand="+" ref_description="SGN-E246644 [cLEF-45-E15]">
      <seq>ctgtcgcagcagcatcactgggacaggtctatcaagctaggcttcgttctaccagggaagttgttgctgtgaaggtgcagagacctggagttcaaagtgcaatctccttggacatattgattttacgatatctcgcaggcttaataaagaaggcaggaaaacttaataccgaccttcaggcagttgttgatgagtgggcctcaagtctttttcgggtggtcaaattgaatgcaggagatggactacaaacaagaagcacggaatggagtcaaatttcggcaattgtatggttcaatacaggatgttgtggttcctgaaatgaatttggcactgacaacccggaaagtgctcattatgcagtggctagaggggcaaaagctggctggggtcaaggatctttatttggttgaggtaggggtttattgctcattcaatcaacttctagagtatggattctatcatgcagatccacatcctggaaaccttcttcgtacatatgacgggaaactagcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="56590" stop="52192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56290" g_stop="56265" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56264" i_stop="56156" i_length="109">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.038" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56155" g_stop="56003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="179" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56002" i_stop="55830" i_length="173">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55829" g_stop="55794" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="215" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55793" i_stop="54948" i_length="846">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54947" g_stop="54885" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="278" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54884" i_stop="53573" i_length="1312">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53572" g_stop="53482" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="369" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53481" i_stop="52723" i_length="759">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52722" g_stop="52681" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="411" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52680" i_stop="52597" i_length="84">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52596" g_stop="52492" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="516" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E246644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56290" e_stop="56265"/>
          <exon e_start="56155" e_stop="56003"/>
          <exon e_start="55829" e_stop="55794"/>
          <exon e_start="54947" e_stop="54885"/>
          <exon e_start="53572" e_stop="53482"/>
          <exon e_start="52722" e_stop="52681"/>
          <exon e_start="52596" e_stop="52492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCGCAGCAGCATCACTTGGACAGGTCTGTGAAGCAGCGGACTTCTGTTTCTTAGTTTAAAATTAGGTGGACTTGTACTCACTCTTAGTATAATCAAAGGTGAAAGAAACTAAATCTGAGTTCCATCTTTAAGGTCTATCAAGCTAGGCTTCGTTCTACCAGGGAAGTTGTTGCTGTGAAGGTGCAGAGACCTGGAGTTCAAAGTGCAATCTCCTTGGACATATTGATTTTACGATATCTCGCAGGCTTAATAAAGAAGGCAGGAAAACTTAATACCGACCTTCAGGTATTATGATAAAAGTAAATTCCTAGCTGAGAGAGGAAAAATGAGATGGGACATGGAACAGTGATTGATTTAGGCTGATCTGAAATTTAGTGTGCACAAGCATCTATTTCCAAAATGACAATATGTATTCTTTGCAATTACTAGTCCTGAGCACATTTTTTCTCGATATACAGGCAGTTGTTGATGAGTGGGCCTCAAGTCTTTTTCGGGTATGATTTTGTATCTTCATCTTCCTAGTAAAATCTCATATGTTTATGTGTGTCCACATAATTCCTCTCCTACTATTTGATAATTGACATCAAAGTTATAAAAAAACCATTGGAAGAAGCCCTTTGGTGTGAATGACATTGTTTCTGTTATATACTAACTGGTATAGTTTCATCTTTAGATTAAGGCATAATTGATTGATTGTTGGTTGTTGTCAACTATTTAATTTGATGTCTTCTACTTCAGTTCCTATCTGTGAGTTTCAACATTTAGTATTACTTGATAAGCCTAGACTTAAAATTTGATCAACTGATCAATACTTTTATTCTTTTTTAGGTTCATATTCTGTCATTGCAAGAGGAATTAATTTTTCCTGTAGTATTCCATAATTAAGTTGTACACATTATTGTGGTTTGGGAAAGACAGACAGCATAAGCTTCGGGCATTTTGAAAAAGAACAGTTTCGGTCTATACATAGTAGATTTATTACTGGAGACTATATTTCTTTTGGAAGATGAATGGAAAGTTGTAGGGAGAAAATTAGGATTTCTGTATTCATTTAATCAAGAGGAAACATATCATAGTATCAAAGAATAACATGTCAACATTAAACTACCTTTTCTACATGAACATTTCAGATACCTCTATGGAAAACCAGAAAATCTTTGATTAGTACTAGTCTGGTAGTTTGACCCTTTCTTTTTGTCTTGATCTTTCATTTTAACTGAACATCCTCATATATCATATATATATATATATATATATATATATATATATAAAATCAAAATTAGCAATAACTACTTCTAATAATAAGGAGGAATATTCTTAGTACTTTATATTGAATACAGGTGGTCAAATTGAATGCAGGAGATGGACTACAAACAAGAAGCACGGAATGGAGTCAAATTTCGGTAAAATGATTTACCTGTTTGACTGTGTCCTCTATAAGATATCTGAAACCTGCATACCTTTAATCCAATCTCACTTAGAACATGATGAGTGAGTTAGCACCTTTAAGAATCTGACTGATGAGAGATTAATCACACTATTTTTGTGGTTAACCACAAGATAATTGATTCACCTCCAAGGTCTTTTACAGAATTTTCCAGTGGGTTTTGAACTTTATGAAATTCAATTAGTTTTTATCATGAGTTAAATATCCTAAATGTGTAAAATCTTTTTTTCTTTCTTATGAAACCGGGGCTAATTTGTAGCATTCTGTACTGGATTACCTGTTGCAGTTACTTCTGTTGATCTTATACGTTCTTGTCAAAGCTTTGTAGTCTATGACCCTTCTGCTGAAATACTAGTCTAATAATTTTCAATTTCAAGCCTTCTATTAAATTAATGTAAAAAGAAACCTTTCTTACAACAGTAAGATGTAATAGACATTTTGTTTATGCATCTTATTCATTATTATGGATTAGCATTTTGACCCTTACCCTTCTTCAAAGTTGATGGGAAAAAGCCAAAAAGAAAAGAAAGTTTTTTTTTGGTTGATGAGATAATTAAGCAGCGCGTAGGGATAGAAGTATTTCTTCCTATGTTCTTAATGAGCCAAAAAACAATATCAAACTGGGAAACTTTTGTAGAATGGAGAGAGATACATAGGAACTTAAGAAACTCCATCGACAAAGCTTGCTTACTGATTTCCTTTGTTTGGTTTTCTGATGCATCAAGACCAAGAGTAAACGCGTTCACTCTTCTTGCAAATGCCAGTGTGCGCTACTTTGGGGTTAATAAGAAGATGTAAAAAGGTGAACCAATGTGTTAAAAAAATGAGAAAAAGGGAAACTCCTGTGAAGTATTTGAAAACATGACAAATATAATGAAATGAACATATAAAGGAATGTGATCTCAATCTGATGTAACCTGCACAATTATTAGTATCAGGTCCATCATGAATGTCCACTTATTGGATATAGCAATACGGTAAGCTGCTCAACAACTATCAAAAGCCTGTGCCAGTAGAAAGTTCCCATGCACAATGTTACTTTAGTTGATTATCATAATTTGTAGCATTCTCATCTTTCCAACAATGACAAGAATTTCGTAATTTCCAGCTAAGCTGATAGTGCTTGCTTCATTTAACATCATAAATATTAAGACTGTATGCTACTCTTTAATTTGTGATTGCACATTCATGCATCTACTAAGATCATATGGAAAAATATTAGCATTATATTTGCATATGCGCTAAACTTTTTATAATTACATGGGCAGGCAATTGTATGGTTCAATACAGGATGTTGTGGTTCCTGAAATGAATTTGGCACTGACAACCCGGAAAGTGCTCATTATGCAGTGGCTAGAGGTAAAAACGCCATATCAGGAGCTAAAAGCTTCAGTCAAGTGATACCTACATCCTGTTAGCTTTTGGGTTAGTTTGTGACAAGTAATGTTAGACGCTCTATTATCTTTCAGCTAGTGTTCTTCCACATAGATATCTAAGTCAATAAAGACAGGATAAGTTAAAATTCTGAATTAAAACAAAAATGATATCTGGAGATTTTCTTACTGAAGGTCAATGAATTTGAGAACAGTTGGTCTCTTTCTTATCCTTGCTCTTCCGATTAAAACATGTCTTTTTGTGGTTCCTGTTGGCTTTCGGACAGTCCTTGACATTCATTCCCTGTGTATGTAGAAAAAGGTTACTTGATGGAGAGTTTCTCTAGATTAACATATTCACTAATTGTTGCACATTACCTACCATCTAGGAGGAGACAAGCAACCAGGAAAGATTATATAGTTACATCCAAAGAGGTTTAGATTACACTGATGTTGCGTTGATCAAACGTTTGAGAATCTTGTCTTTTCCTTGAAGAATTTCCTCTTTGTCATTAATGGTTTCGTTATATTGGGACATTTCAGATTTAAATACAGTAGATCCTAGAAGTAACATGTTCTCATTAGGCTCACTGATTTATGTATTAACTCAGCAATGTGGAGAGTGTCAAGAATTTTCTTTTTAGTTCCAATGAGGTGGAATATTTTATAAACTGGTGTATGTTGTCTCCTAATGTTATGAAGCTTAGACATCTTGCTCATGTTACTACACCTTTCTCTTGGCTAGGGGCAAAAGCTGGCTGGGGTCAAGGATCTTTATTTGGTTGAGGTTAAGTCGTGAAACTCATTTTCCTCAATGTTTGTGTGTTTTTCCACTTTGAACCATGCTCTAAAGTGAAATTGATGTTCACAGGTAGGGGTTTATTGCTCATTCAATCAACTTCTAGAGTATGGATTCTATCATGCAGATCCACATCCTGGAAACCTTCTTCGTACATATGACGGGAAACTAGCCTAC</genome_strand>
        <mrna_strand>CTGTCGCAGCAGCATCACTGGGACAG.............................................................................................................GTCTATCAAGCTAGGCTTCGTTCTACCAGGGAAGTTGTTGCTGTGAAGGTGCAGAGACCTGGAGTTCAAAGTGCAATCTCCTTGGACATATTGATTTTACGATATCTCGCAGGCTTAATAAAGAAGGCAGGAAAACTTAATACCGACCTTCAG.............................................................................................................................................................................GCAGTTGTTGATGAGTGGGCCTCAAGTCTTTTTCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCAAATTGAATGCAGGAGATGGACTACAAACAAGAAGCACGGAATGGAGTCAAATTTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGTATGGTTCAATACAGGATGTTGTGGTTCCTGAAATGAATTTGGCACTGACAACCCGGAAAGTGCTCATTATGCAGTGGCTAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAAAAGCTGGCTGGGGTCAAGGATCTTTATTTGGTTGAG....................................................................................GTAGGGGTTTATTGCTCATTCAATCAACTTCTAGAGTATGGATTCTATCATGCAGATCCACATCCTGGAAACCTTCTTCGTACATATGACGGGAAACTAGCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204053" ref_strand="+" ref_description="SGN-E204053 [cLEC-22-M4]">
      <seq>tttctctaaaattcacatacttgaaaatttgattcgaaactattacgaatagccgtacttattaatttctttttcattatgtaaatctcgaaattgaaaagataggaggcatatcccaattagtagtagtatttattatattagtccattgtcttccattttccactacctcatcagtgagctttgtgccttgagagttccattttcaagttcccaatctaagaaaaaacaataatggcagaatcgtcgccggtacgttttggtattttaggttgtgctaacattgctcgtaaagtatcacgcgccatcgcactttctccaaacgccactatctccgccgtcggcaggcgttcgatcgaaaaagcgacggcgtacgccaaggaaaacggttatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgcccgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66489" stop="67548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66789" g_stop="67248" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E204053" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66789" e_stop="67248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTAAAATTCACATACTTGAAAATTTGATTCGAAACTATTACGAATAGCCGTACTTATTAATTTCTTTTTCATTATGTAAATCTCGAAATTGAAAAGATAGGAGGCATATCCCAATTAGTAGTAGTATTTATTATATTAGTCCATTGTCTTCCATTTTCCACTACCTCATCAGTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATG-CCGTTT</genome_strand>
        <mrna_strand>TTTCTCTAAAATTCACATACTTGAAAATTTGATTCGAAACTATTACGAATAGCCGTACTTATTAATTTCTTTTTCATTATGTAAATCTCGAAATTGAAAAGATAGGAGGCATATCCCAATTAGTAGTAGTATTTATTATATTAGTCCATTGTCTTCCATTTTCCACTACCTCATCAGTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGGCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745322" ref_strand="+" ref_description="SGN-E745322 [GI|47105756]">
      <seq>gagtccattgtcttccattttccactacctcatcagtgagctttgtgccttgagagttccattttcaagttcccaatctaagaaaaaacaataatggcagaatcgtcgccggtacgttttggtattttaggttgtgctaacattgctcgtaaagtatcacgcgccatcgcactttctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacggttatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgccgtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcagcccagaagaagaaacatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatatgatactggaggggtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcgatacatagcacgttttcttatcttggtgacgcggagtttcttgagaatgacattcgcgtgaagtccgatcttgatgctcttggtgctctaggtgatgctggttggtatagtattcgggcaatcttgtggactaatgattatgaattgccaaaaacagtaacagctctgggtgatccagaatttaatgaagctggagttatcctatcttgtggcgcttctttgagttggaaagacggaagggtagcaactttttattgttcatttttagctaatatggccatggacatcgttgctattggatccaaaggaaatttgcgggtccatgactttgtaattccatttcaagaaaatgttgctccgttttacactgtggaaggttcgtgttttggtgaacttgctagatcaattcatcctgcacctagtgagcatcaagtcaatacagatcttcctcaagaggctctgatggtaacggagttttcaaacctggttggaagtatcaaaggggaaggttctaaacctgagaagaagtggccaacgattagtagaaagacacaacttgtggtggatgctgtcaaggcatcaattgagaaaggtttcgagcccgttgagatcatctattagttggtatttagctatctttcttgtgaaatctgaacgctatgtgttgttgtaactgaatgttgtatttctgaataaggcttgtaagcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66631" stop="79658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66930" g_stop="67487" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68897" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="1265" r_length="707" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68898" i_stop="70663" i_length="1766">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70664" g_stop="70685" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1266" r_stop="1287" r_length="22" r_score="0.682"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E745322" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66930" e_stop="67487"/>
          <exon e_start="68191" e_stop="68897"/>
          <exon e_start="70664" e_stop="70685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCCATTGTCTTCCATTTTCCACTACCTCATCAGTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGAAATGAATTGGCCGAGCTAGTTTGAACAACCTGCATTTTCATGAAAAATAGCAGCCATCCCTTCCTCCCGGATCTCCACGTTAAGGAACCCGGGTATGTATGCTCACGCTCAACGGTCTTGTGATGCTTCAATGATGAGAATCTAGTGTTCTGATACCAAAATTTGTTGAATTTGCGTGATCAACATTTGACACACTATCCAATTCAATCAAACAAGCCCAAATGATCTCAAACTATATGGAGTAATTTAAAAACCATATACATTTTCGAATCTCAAAACCATATGTGAAGCCAATGAAATGAGTCCATGGATTGGTAAGTGGATATAGTTGCTAATGGATATTATCAATTTGCAGGTTGAGTTGATAAAATCCATTACGTTGTTGATTAGTTTTGCATCAAAATGATTAACTAATAAAGTATTTTTTATTAGATCACATCAAAATTATCTTTCCTATAATAAAGAATCAATAGAATTTTAGAATATATTTCATTCAAAAGCTTACCAACTCCTATAATTGTCCAATTTGAGTAAAGATGAATCAAAGTCGTATTTTGATTATGCCAACTTTTTACCACTCTTTTGTTTGCTTTCATATTCTACCAAGCATACATTAGTCCTTTGAACTGTATATATTTTTAATCAATTGTGTCAGCAAAATCGTCAAAGATCTTTTCAAATTTTAAAGAAGTAGTACTATATTTTAAATTCATTACATATTCCGCTAGATTATAAAAATAATTATGATGTTTTTTTCTCTTTCCAAATCCTGAGTTTGATATTGTTGTTCTTTTCTGCTTCACTATGATATTAATAGTAGGGTGTTTTAAAATTAGAATCAGTAAATTTACTCGTGCTTCGCGCGGAAACTTTATATAACAAAATTTATAAAATAATAATTTAGATCTATCAGTCATTAAAATTAAAATACTATATTATCTTATGTACAAGATTACGCGATAACAAATATTAATAATGTAAAGAAAAATGAAACTTAGTACATCTTATCTTTTTTTTTTGAGACAAGGGTAGGGAGTACATACCAAGATCTGTAACATAAGCAATGTTGTCAGTAATAGTGTCAGTGAGCCACTCATCACGAATCAAGTTCACAAATATTTAGTTGATAAATGTAACTTATCTTATCATTTATCCTTAATAACATAAGTAGAAACTAATGACTGTAAAAATACATACCAAGATCTGTAACATAACCAATGGTGTCGGTGAGTCACTCAATCGTAACCAAGTACACAATTATTTAGTTGTGAAGAAGAAGAAGAAAAGAAGAAGAAAGTTTTAGGATTTTCGTTGTTTTAAAATGAGAGGAAATCCCTCTATTTATAGACAACAAATGATAACCTCCACAAATGTTTATTGTGTCTTGTTGAAAAGGTTACAACTACTTGAAAAAGTCGCTTCCCTTCATAATGGTCACAACCTTTATATAAGTCACAAACTTTCACAAAAGTTTCATTAAAGTCGCAACTGTTCACGAAAGTCGTAACTCTTTGTAAAAGTTACAACTTCTTGCAAAAGTCATAATTTTACATAAAAGTCGCAACTCTTCGTAAAAGTCACAACTCTTCATAAAAGTCACAACTTTTCATGAAGGGGAAGACTAGTTTTGAAAATAAATAAATTTAAAACGAAATTCTTATTTGTGGGAGCGCCACGTAGACGGATCTGAGATTTTCTTTTTTATATATATACATATATGATTAGAAGTCAAGAAGAAGAAAAAAAG</genome_strand>
        <mrna_strand>GAGTCCATTGTCTTCCATTTTCCACTACCTCATCAGTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466294" ref_strand="+" ref_description="SGN-E466294 [cPRO-23-F6]">
      <seq>gttttccattttccactacctcatcagttagctttgtgctttgattgaaagttccattttcaagtttccaatctgagaaaaacaataatggcagagtcatcgccggtacgttttggcattttaggttgcgctaacattgctcgtaaagtatcacgcgccatcacacttgctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacgggtatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgccgtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcggcgcagaagaagaagcatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatgtgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66639" stop="67666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66939" g_stop="67366" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E466294" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66939" e_stop="67366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCCATTTTCCACTACCTCATCAGTGAGCTTTGTGCCTTGA--G--AGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACT</genome_strand>
        <mrna_strand>GTTTTCCATTTTCCACTACCTCATCAGTTAGCTTTGTGCTTTGATTGAAAGTTCCATTTTCAAGTTTCCAATCTGAGAAAAA-CAATAATGGCAGAGTCATCGCCGGTACGTTTTGGCATTTTAGGTTGCGCTAACATTGCTCGTAAAGTATCACGCGCCATCACACTTGCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGGTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCGGCGCAGAAGAAGAAGCATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATGTGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466809" ref_strand="+" ref_description="SGN-E466809 [cPRO-26-M13]">
      <seq>catcagttagctttgtgctttgaaagttccattttcaagtttccaatctgagaaaaacaataatggcagagtcgtcgccggtacgttttggcatattaggtttcgctaacatagctcgtaaagtatcacgcgccatcgcacttgctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacgggtatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgcagtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcggcccacaagaagaagcatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatgtgatactggaggagtgtgaatcgaatggggtgcagcacatggatgctactatgtggatgcatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66660" stop="67725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66960" g_stop="67425" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E466809" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66960" e_stop="67425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATC</genome_strand>
        <mrna_strand>CATCAGTTAGCTTTGTGCTTTGAAAGTTCCATTTTCAAGTTTCCAATCTGAG-AAAAACAATAATGGCAGAGTCGTCGCCGGTACGTTTTGGCATATTAGGTTTCGCTAACATAGCTCGTAAAGTATCACGCGCCATCGCACTTGCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGGTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCAGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCGGCCCACAAGAAGAAGCATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATGTGATACTGGAGGAGTGTGAATCGAATGGGGTGCAGCACATGGATGCTACTATGTGGATGCATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709520" ref_strand="+" ref_description="SGN-E709520 [FA52BB10]">
      <seq>cggatctttgtgccttgagagttccattttcaagttcccaatctaagaaaaaacaataatggcagaatcgtcgccggtacgttttggtattttaggttgtgctaacattgctcgtaaagtatcacgcgccatcgcactttctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacggttatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgccgtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcagcccagaagaagaaacatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatatgatactggaggggtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcgatacatagcacgttttcttatcttggtgacgcggagtttcttgagaatgacattcgcgtgaagtccgatcttgatgctcttggtgctctaagtgatgctggttggtatagtattcgggcaatcttgtggactaatgattatgaattgccaaaaacagtaacagctctgggtgatccagaatttaatgaagctggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66667" stop="68688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66965" g_stop="67487" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68388" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="721" r_length="198" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E709520" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66965" e_stop="67487"/>
          <exon e_start="68191" e_stop="68388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTT</genome_strand>
        <mrna_strand>CGGATCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAAGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429543" ref_strand="+" ref_description="SGN-E429543 [STM-52-A18]">
      <seq>gttagctttgtgctttgaaagttccattttcaagtttccaatctgagaaaaacaataatggcagagtcgtcgccggtacgttttggcatattaggtttcgctaacatagctcgtaaagtatcacgcgccatcgcacttgctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacgggtatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgcagtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcggcccagaagaagaagcatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatgtgatactggaggagtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcgttacatagcacgtttgcttatcttggtgacacggaatttcttgagaatacattcgcgtgaagtccgatcttgatgctcntggtgctctaggtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66665" stop="68589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66965" g_stop="67487" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68289" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="620" r_length="98" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E429543" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66965" e_stop="67487"/>
          <exon e_start="68191" e_stop="68289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCT</genome_strand>
        <mrna_strand>GTTAGCTTTGTGCTTTGAAAGTTCCATTTTCAAGTTTCCAATCTGAG-AAAAACAATAATGGCAGAGTCGTCGCCGGTACGTTTTGGCATATTAGGTTTCGCTAACATAGCTCGTAAAGTATCACGCGCCATCGCACTTGCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGGTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCAGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCGGCCCAGAAGAAGAAGCATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATGTGATACTGGAGGAGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATAGCACGTTTGCTTATCTTGGTGACACGGAATTTCTTGAGAAT-ACATTCGCGTGAAGTCCGATCTTGATGCTCNTGGTGCTCTAGGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457473" ref_strand="+" ref_description="SGN-E457473 [cPRO-2-F16]">
      <seq>gttagctttgtgctttgaaagttccattttcaagtttccaatctgagaaaaacaataatggcagagtcgtcgccggtacgttttggcatattaggtttcgctaacatagctcgtaaagtatcacgcgccatcgcacttgctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacgggtatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgcagtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcggcccagaagaagaagcatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatgtgatactggaggagtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcgttacatagcacgtttgcttatcttggtgacacggaatttcttgagaataacattcgcgtgaagtccgatcttgatgctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66665" stop="68572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66965" g_stop="67487" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68272" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="604" r_length="82" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E457473" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66965" e_stop="67487"/>
          <exon e_start="68191" e_stop="68272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTG</genome_strand>
        <mrna_strand>GTTAGCTTTGTGCTTTGAAAGTTCCATTTTCAAGTTTCCAATCTGAG-AAAAACAATAATGGCAGAGTCGTCGCCGGTACGTTTTGGCATATTAGGTTTCGCTAACATAGCTCGTAAAGTATCACGCGCCATCGCACTTGCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGGTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCAGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCGGCCCAGAAGAAGAAGCATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATGTGATACTGGAGGAGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATAGCACGTTTGCTTATCTTGGTGACACGGAATTTCTTGAGAATAACATTCGCGTGAAGTCCGATCTTGATGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202932" ref_strand="+" ref_description="SGN-E202932 [cLEB-1-J16]">
      <seq>gcacgagcttgagagttccattttcaagttcccaatctaagaaaaaacaataatggcagaatcgtcgccggtacgttttggtattttaggttgtgctaacattgctcgtaaagtatcacgcgccatcgcactttctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacggttatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgccgtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcagcccagaagaagaaacatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatatgatactggaggggtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcgatacatagcacgttttcttatcttggtgacgcggagtttcttgagaatgacattcgcgtgaagtccgatcttgatgctcttggtgctctaagtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66674" stop="68589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66969" g_stop="67487" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68289" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="616" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E202932" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66969" e_stop="67487"/>
          <exon e_start="68191" e_stop="68289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCT</genome_strand>
        <mrna_strand>GCAC-GAG-CTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAAGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452414" ref_strand="+" ref_description="SGN-E452414 [cSTS-16-B12]">
      <seq>ctttgtgctttgaaagttccattttcaagttttcaatctgagaaaaacaataatggcagagtcgacgccggtacgttttggcatattaggttgcgctaacatagctcgtaaagtatcacgcgccatcgcacttgctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacgggtatgcgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgcagtttacgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcggcccagaagaagaagcatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatgtgatactggaggagtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcggtacatagcacatttgcttatcttggtgacactgaatttcttgagaaaacattcgtgtgaagtccgatcttgatgctcttggtgctctaggtgatgctggttggtacagtattcgggcaatcttgtggactagtgattatgaattgccaaaaacagtgacagctctgcgtgatccagaatttaatgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66670" stop="68682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66970" g_stop="67487" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68382" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="708" r_length="191" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E452414" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66970" e_stop="67487"/>
          <exon e_start="68191" e_stop="68382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCT</genome_strand>
        <mrna_strand>CTTTGTGCTTTGAAAGTTCCATTTTCAAGTTTTCAATCTGAG-AAAAACAATAATGGCAGAGTCGACGCCGGTACGTTTTGGCATATTAGGTTGCGCTAACATAGCTCGTAAAGTATCACGCGCCATCGCACTTGCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGGTATGCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCAGTTTACGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCGGCCCAGAAGAAGAAGCATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATGTGATACTGGAGGAGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGCACATTTGCTTATCTTGGTGACACTGAATTTCTTGAGAA-AACATTCGTGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTACAGTATTCGGGCAATCTTGTGGACTAGTGATTATGAATTGCCAAAAACAGTGACAGCTCTGCGTGATCCAGAATTTAATGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327587" ref_strand="+" ref_description="SGN-E327587 [cTOC-20-M12]">
      <seq>tgccttgagagttccattttcaagttcccaatctaagaaaaaacaataatggcagaatcgtcgccggtacgttttggtattttaggttgtgctaacattgctcgtaaagtatcacgcgccatcgcactttctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacggttatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgccgtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcagcccagaagaagaaacatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatatgatactggaggggtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcgatacatagcacgttttcttatcttggtgacgcggagtttcttgagaatgacattcgcgtgaagtccgatcttgatgctcttggtgctctaggtgatgctggttggtatagtattcgggcaatcttgtggactaatgattatgaatttgcaaaaacagtaacagctctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66675" stop="68659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66975" g_stop="67487" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68359" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="682" r_length="169" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E327587" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66975" e_stop="67487"/>
          <exon e_start="68191" e_stop="68359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGG</genome_strand>
        <mrna_strand>TGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTTGCAAAAACAGTAACAGCTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573327" ref_strand="+" ref_description="SGN-E573327 [32621]">
      <seq>gctttgaaagttccattttcaagttttcaactctgagaaaaacaataatggcagagtcgacgccggtacgttttggcatattaggttgcgctaacatagctcgtaaagtatcacgcgccatcgcacttgctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacgggtatgcgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgcagtttacgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcggcccagaagaagaagcatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatgtgatactggaggagtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcggtacatagcacatttgcttatcttggtgacactgaatttcttgagaataacattcgtgtgaagtccgatcttgatgctcttggtgctctaggtgatgctggttggtacagtattcgggcaatcttgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66676" stop="68619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66976" g_stop="67487" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68319" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="641" r_length="129" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E573327" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66976" e_stop="67487"/>
          <exon e_start="68191" e_stop="68319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTGAGAGTTCCATTTTCAAGTTCCCAA-TCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGG</genome_strand>
        <mrna_strand>GCTTTGAAAGTTCCATTTTCAAGTTTTCAACTCTGAG-AAAAACAATAATGGCAGAGTCGACGCCGGTACGTTTTGGCATATTAGGTTGCGCTAACATAGCTCGTAAAGTATCACGCGCCATCGCACTTGCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGGTATGCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCAGTTTACGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCGGCCCAGAAGAAGAAGCATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATGTGATACTGGAGGAGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGCACATTTGCTTATCTTGGTGACACTGAATTTCTTGAGAATAACATTCGTGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTACAGTATTCGGGCAATCTTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449000" ref_strand="+" ref_description="SGN-E449000 [cSTS-5-G3]">
      <seq>tttgaaagttccattttcaagttttcaatctgagaaaaacaataatggcagagtcgacgccggtacgttttggcatattaggttgcgctaacatagctcgtaaagtatcacgcgccatcgcacttgctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacgggtatgcgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgcagtttacgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcggcccagaagaagaagcatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatgtgatactggaggagtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcggtacatagcacatttgcttatcttggtgacactgaatttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66679" stop="67792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66978" g_stop="67487" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E449000" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66978" e_stop="67487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG</genome_strand>
        <mrna_strand>TTTGAAAGTTCCATTTTCAAGTTTTCAATCTGAG-AAAAACAATAATGGCAGAGTCGACGCCGGTACGTTTTGGCATATTAGGTTGCGCTAACATAGCTCGTAAAGTATCACGCGCCATCGCACTTGCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGGTATGCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCAGTTTACGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCGGCCCAGAAGAAGAAGCATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATGTGATACTGGAGGAGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374666" ref_strand="+" ref_description="SGN-E374666 [TUS-15-N13]">
      <seq>ttgagagttccattttcaagttcccaatctaagaaaaaacaataatggcagaatcgtcgccggtacgttttggtattttaggttgtgctaacattgctcgtaaagtatcacgcgccatcgcactttctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacggttatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgccgtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcagcccagaagaagaaacatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatatgatactggaggggtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcgatacatagcacgttttcttatcttggtgacgcggagtttcttgagaatgacattcgcgtgaagtccgatcttgatgctcttggtgctctaggtgatgctggttggtatagtattcgggcaatcttgtggactaatgattatgaattgccaaaaacagtaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66679" stop="68654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66979" g_stop="67487" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68354" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="673" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E374666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66979" e_stop="67487"/>
          <exon e_start="68191" e_stop="68354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGC</genome_strand>
        <mrna_strand>TTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204908" ref_strand="+" ref_description="SGN-E204908 [cLEC-14-L20]">
      <seq>ttgagagttccattttcaagttcccaatctaagaaaaaacaataatggcagaatcgtcgccggtacgttttggtattttaggttgtgctaacattgctcgtaaagtatcacgcgccatcgcactttctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacggttatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgccgtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcagcccagaagaagaaacatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatatgatactggaggggtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66679" stop="67720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66979" g_stop="67420" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E204908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66979" e_stop="67420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCA</genome_strand>
        <mrna_strand>TTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276724" ref_strand="+" ref_description="SGN-E276724 [cLEN-14-P13]">
      <seq>cattttcaagttcccaatctaagaaaaaacaatgatggcacaatcgccgccggtgacgttttggtattttaggttgtgctaacattgctcgtaaagtatcacgcgccatcgcactttctccaaacgccactatctccgccgtcggcagccgttcgatcgacaaagcgacggtggacgccaaggaaaacggttatacgttaacgacgaagatttacggcagatatgaggcggctctggatgatccggaagtggatgccgttgatggacctcttccgacgagcctgcatgtgatgtgggccgtgttggcagcccatatgaacaaacatgttttgctggagaagcctgttgcgttaaacgtgaaggacctgtatatgatactggaggggtgtgaatcgaatggtgtgcagtacatggatgctacgatgtggatgcatcatccgcgtcactgctaagatgaaagagttcctctctgattctcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66689" stop="67767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66989" g_stop="67467" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E276724" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66989" e_stop="67467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGT-ACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGT-ACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGC</genome_strand>
        <mrna_strand>CATTTTCAAGTTCCCAATCTAAGAAAAAACAATGATGGCACAATCGCCGCCGGTGACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGACAAAGCGACGGTGGACGCCAAGGAAAACGGTTATACGTTAACGACGAAGATTTACGGCAGATATGAGGCGGCTCTGGATGATCCGGAAGTGGATGCCGTTGATGGACCTCTTCCGACGAGCCTGCATGTGATGTGGGCCGTGTTGGCAGCCCATATGAACAAACATGTTTTGCTGGAGAAGCCTGTTGCGTTAAACGTGAAGGACCTGTATATGATACTGGAGGGGTGTGAATCGAATGGTGTGCAGTACATGGATGCTACGATGTGGATGCATCATCCGCGTCACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274830" ref_strand="+" ref_description="SGN-E274830 [cLEN-13-P13]">
      <seq>cattttcaagttcccaatctaagaaaaaacaataatggcagaatcgtcgccggtacgttttggtattttaggttgtgctaacattgctcgtaaagtatcacgcgccatcgcactttctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacggttatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgccgtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcagcccagaagaagaaacatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatatgatactggaggggtgtgaatcgaatggcgtgcagtacatggatgctactatgtggatgcatcatccgcgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66689" stop="67733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66989" g_stop="67433" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E274830" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66989" e_stop="67433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACT</genome_strand>
        <mrna_strand>CATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGCGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466047" ref_strand="+" ref_description="SGN-E466047 [cPRO-23-E5]">
      <seq>caagtttccaatctgagaaaaacaataatggcagagtcatcgccggtacgttttggcattttaggttgcgctaacattgctcgtaaagtatcacgcgccatcacacttgctccaaacgccactatctccgccgtcggcagccgttcgatcgaaaaagcgacggcgtacgccaaggaaaacgggtatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgccgtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcggcgcagaagaagaagcatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatgtgatactggaggagtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcggtacatagcacgtttgcttatcttggtgacacggaatttcttgagaataacattcgtgtgaagtccgatcttgatgctcttggtgctctaggtgatgctggttggtacagtattcgggcaatcttgtggactagtgattatgaaattgcaaaaacagtgacagctctgcgtgatccagaaatttatgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66695" stop="68683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66995" g_stop="67487" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68383" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="685" r_length="193" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E466047" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66995" e_stop="67487"/>
          <exon e_start="68191" e_stop="68383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTG</genome_strand>
        <mrna_strand>CAAGTTTCCAATCTGAG-AAAAACAATAATGGCAGAGTCATCGCCGGTACGTTTTGGCATTTTAGGTTGCGCTAACATTGCTCGTAAAGTATCACGCGCCATCACACTTGCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGGTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCGGCGCAGAAGAAGAAGCATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATGTGATACTGGAGGAGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGCACGTTTGCTTATCTTGGTGACACGGAATTTCTTGAGAATAACATTCGTGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTACAGTATTCGGGCAATCTTGTGGACTAGTGATTATGAAATTGCAAAAACAGTGACAGCTCTGCGTGATCCAGAAATTTATGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337750" ref_strand="+" ref_description="SGN-E337750 [cTOE-17-B9]">
      <seq>gatcgaaaaagcgacggcgtacgccaaggaaaacggttatccgtcaacgacgaagatttacggcagttatgaggcggttctggatgatccggaagtggatgccgtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcagcccagaagaagaaacatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatatgatactggaggggtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcgatacatagcacgttttcttatcttggtgacgcggagtttcttgagaatgacattcgcgtgaagtccgatcttgatgctcttggtgctctaggtgatgctggttggtatagtattcgggcaatcttgtggactaatgattatgaattgccaaaaacagtaacagctctgggtgatccagaatttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66842" stop="68676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67142" g_stop="67487" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68376" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="532" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E337750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67142" e_stop="67487"/>
          <exon e_start="68191" e_stop="68376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAAT</genome_strand>
        <mrna_strand>GATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450470" ref_strand="+" ref_description="SGN-E450470 [cSTS-9-O2]">
      <seq>gtggatgcagtttatgttcctcttccgacgagcctgcatgtgaagtgggccgtgttggcggcccagaagaagaagcatgttttgctggaaaagcctgttgcgttaaacgtgaaggagctggatgtgatactggaggagtgtgaatcgaatggggtgcagtacatggatgctactatgtggatgcatcatccgcgtactgctaagatgaaagagttcctctctgattctcagcgttttggacaactcaaatcggtacatagcacgtttgcttatcttggtgacacggaatttcttgagaataacattcgcgtgaagtccgatcttgatgctcttggtgctctaggtgatgctggttggtacagtattcgggcaatcttgtggactagtgattatgaattgccaaaaacagtgacagctctgcgtgatccagaatttaatgaagctggagttatcctatcttgtggcgcttctttgagttggaaagacggaagggtagcaactttttattgttcgtttttagccaatatggccatggatatcgttgctagtggatccaaaagaaatttgcgagtccatgactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="66936" stop="68821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67236" g_stop="67487" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68521" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="583" r_length="331" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E450470" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67236" e_stop="67487"/>
          <exon e_start="68191" e_stop="68521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTG</genome_strand>
        <mrna_strand>GTGGATGCAGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCGGCCCAGAAGAAGAAGCATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATGTGATACTGGAGGAGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGCACGTTTGCTTATCTTGGTGACACGGAATTTCTTGAGAATAACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTACAGTATTCGGGCAATCTTGTGGACTAGTGATTATGAATTGCCAAAAACAGTGACAGCTCTGCGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCGTTTTTAGCCAATATGGCCATGGATATCGTTGCTAGTGGATCCAAAAGAAATTTGCGAGTCCATGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453405" ref_strand="+" ref_description="SGN-E453405 [cSTS-19-L8]">
      <seq>ggacaactcaaatcggtacatagcacgtttgcttatcttggtgacacggaatttcttgagaataacattcgtgtgaagtccgatcttgatgctcttggtgctctaggtgatgctggttggtacagtattcgggcaatcttgtggactagtgattatgaattgccaaaaacagtgacagctctgcgtgatccagaatttaatgaagctggagttatcctatcttgtggcgcttctttgggttggaaagacggaagggtagcaactttttattgttcgtttttagccaatatggccatggatatcgttgctagtggatccaaagggaatctgcgggtccatgactttgtaattccatttcaagaaaatgttgctccattttacactgtggaaggttcgtggtttggtgaacttgctacatcgattcatcctgcaccaagtgagcatcaagtcaatacagatcttcctcaagaggctttgatggtaaaggagttttcaaacctggttggaagtatcaaaggggaaggctctnaacctgagaagaagtggccaacgattagtagaaagacacaacttgtagtggatgctgtcaaggcatcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="67173" stop="69076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67473" g_stop="67487" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68191" g_stop="68776" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="601" r_length="586" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E453405" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67473" e_stop="67487"/>
          <exon e_start="68191" e_stop="68776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAACTCAAATCGGTAATCTGCTGATTTTATTTTTGAACCTTTTGTTTTCTGCATTAAGTACTGATAAATGGATCTGAATCATTTGGAATATTGTTTTAATGTCATGATAAGTTGACTCATAAAAATGTAAGGTTTAAAAAGGAACAAATTGAAACTTAACCAAACGAGGGTTGTGCTGGAGGATAACTACTCGTTCATATTTAACTAGTGGTGAGTACTGTTCATACTTAATTAGATGTCTTGGCTTCGAGTCTCTTCGATACGGAGTGACCTTGTTAGGGAGTGCTTAGCTCAATGTGAAACTTCGATGCAGATTAGCCTTAGTTAGGGATGTTTTAGCTCAATGTGAGATGTTCTGGCACGAATTCGGATTTTAATTGACCTCTAATGTGGCTATCAAACACCGATTGGGAAAAAATAAATTGAAACAACCTTTGTTAGGGAGTGCTTTAGCTCAATGAGACTTCAATAGAGAGTCGGTCACCTTTGTTAGGGAGTGCTTTAGCTCAATGTGAGACTTTTTGGTGCGAATTCGGATTTTAATCAGACCTTCAATGTGGGCATCGAACATAGGGAAACAAAAAAAATTGAAACAGAAACTGAGGGTACAAATTTAGGAATTGATGCAAAAAATTTGGAACTTAAACAGTTGTGAGAACCCCAAATGAAGTCTTCCTCTAGGATCCTTGAAGATGGTCTTATTTTTTGTTGACAGATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTG</genome_strand>
        <mrna_strand>GGACAACTCAAATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGCACGTTTGCTTATCTTGGTGACACGGAATTTCTTGAGAATAACATTCGTGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTACAGTATTCGGGCAATCTTGTGGACTAGTGATTATGAATTGCCAAAAACAGTGACAGCTCTGCGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGGGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCGTTTTTAGCCAATATGGCCATGGATATCGTTGCTAGTGGATCCAAAGGGAATCTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCATTTTACACTGTGGAAGGTTCGTGGTTTGGTGAACTTGCTACATCGATTCATCCTGCACCAAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTTTGATGGTAAAGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGCTCTNAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTAGTGGATGCTGTCAAGGCATCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321734" ref_strand="+" ref_description="SGN-E321734 [cTOB-25-E6]">
      <seq>aaatcgatacatagcacgttttcttatcttggtgacgcggagtttcttgagaatgacattcgcgtgaagtccgatcttgatgctcttggtgctctaggtgatgctggttggtatagtattcgggcaatcttgtggactaatgattatgaattgccaaaaacagtaacagctctgggtgatccagaatttaatgaagctggagttatcctatcttgtggcgcttctttgagttggaaagacggaagggtagcaactttttattgttcatttttagctaatatggccatggacatcgttgctattggatccaaaggaaatttgcgggtccatgactttgtaattccatttcaagaaaatgttgctccgttttacactgtggaaggttcgtgttttggtgaacttgctagatcaattcatcctgcacctagtgagcatcaagtcaatacagatcttcctcaagaggctctgatggtaacggagttttcaaacctggttgggagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="67890" stop="68987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68191" g_stop="68687" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="503" r_length="497" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E321734" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68191" e_stop="68687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTAT</genome_strand>
        <mrna_strand>ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGGAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537635" ref_strand="+" ref_description="SGN-E537635 [TUS-56-F12](-)">
      <seq>aagacggaagggtagcaactttttattgttcatttttagctaatatggccatggacatcgttgctattggatccaaaggaaatttgcgggtccatgaatttgtaattccatttcaagaaaatgttgctccgttttacactgtggaaggttcgtgttttggtgaacttgctagatcaattcatcctgcacctagtgagcatcaagtcaatacagatcttcctcaagaggctttgatggtaacggagttttcaaacctggttggaagttggaaaggcgaaggttctaaacctgagaagaagtggccaacgattagtagaaagacacaacttgtggtggatgctgtcaaggcatcaattgagaaaggtttcgagcccgttgagatcatctattagttggtatttagctatctttcttgtgaaatctgaacgctatgtgttgttgtaactgaatgttgtatttctgaataaggcttgtaagcttctgtttgttgaccaatgtgtatgtaatataggtgtttggaaatgaattggccgagctagtttgaacaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="68120" stop="69266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68420" g_stop="68974" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E537635" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68420" e_stop="68974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGA-CAATGTGTATGTAATATAGGTGTTTGGAAATGAATTGGCCGAGCTAGTTTGAACAACCTGCATT</genome_strand>
        <mrna_strand>AAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGAATTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTTTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTTGGAAAGGCGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACCAATGTGTATGTAATATAGGTGTTTGGAAATGAATTGGCCGAGCTAGTTTGAACAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275517" ref_strand="+" ref_description="SGN-E275517 [cLEN-10-E22]">
      <seq>aactttttattgttcatttttagctaatatggccatggacatcgttgctattggatccaaaggaaatttgcgggtccatgactttgtaattccatttcaagaaaatgttgctccgttttacattgtggaaggttcgtgttttggtgaacttgctagatcaattcatcctgcacctagtgagcatcaagtcaatacagatcttcctcaagaggctctgatggtaacggagttttcaaacctggttggaagtatcaaaggggaaggttctaaacctgagaagaagtggccaacgattagtagaaagacacaacttgtggtggatgctgtcaaggcatcaattgagaaaggtttcgagcccgttgagatcatctattagttggtatttagctatctttcttgtgaaatctgaacgctatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="68136" stop="69154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68436" g_stop="68854" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E275517" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68436" e_stop="68854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTG</genome_strand>
        <mrna_strand>AACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACATTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219892" ref_strand="+" ref_description="SGN-E219892 [cLEL-24-I8](-)">
      <seq>aatttgcgggtccatgactttgtaattccatttcaagaaaatgttgctccgttttacactgtggaaggttcgtgttttggtgaacttgctagatcaattcatcctgcacctagtgagcatcaagtcaatacagatcttcctcaagaggctctgatggtaacggagttttcaaacctggttggaagtatcaaaggggaaggttctaaacctgagaagaagtggccaacgattagtagaaagacccaacttgtggtggatgctgtcaaggcatcaattgagaaaggtttcgagcccgttgagatcatctattagttggtatttagctatctttcttgtgaaatctgaacgctatgtgttgttgtaactgaatgttgtatttctgaataaggcttgtaagcttctgtttgttgacaatgtgtatgtaatataggtgtttggaaatgaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="68200" stop="79658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68500" g_stop="68947" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68948" i_stop="70663" i_length="1716">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.753" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70664" g_stop="70684" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="469" r_length="21" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E219892" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68500" e_stop="68947"/>
          <exon e_start="70664" e_stop="70684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGAAATGAATTGGCCGAGCTAGTTTGAACAACCTGCATTTTCATGAAAAATAGCAGCCATCCCTTCCTCCCGGATCTCCACGTTAAGGAACCCGGGTATGTATGCTCACGCTCAACGGTCTTGTGATGCTTCAATGATGAGAATCTAGTGTTCTGATACCAAAATTTGTTGAATTTGCGTGATCAACATTTGACACACTATCCAATTCAATCAAACAAGCCCAAATGATCTCAAACTATATGGAGTAATTTAAAAACCATATACATTTTCGAATCTCAAAACCATATGTGAAGCCAATGAAATGAGTCCATGGATTGGTAAGTGGATATAGTTGCTAATGGATATTATCAATTTGCAGGTTGAGTTGATAAAATCCATTACGTTGTTGATTAGTTTTGCATCAAAATGATTAACTAATAAAGTATTTTTTATTAGATCACATCAAAATTATCTTTCCTATAATAAAGAATCAATAGAATTTTAGAATATATTTCATTCAAAAGCTTACCAACTCCTATAATTGTCCAATTTGAGTAAAGATGAATCAAAGTCGTATTTTGATTATGCCAACTTTTTACCACTCTTTTGTTTGCTTTCATATTCTACCAAGCATACATTAGTCCTTTGAACTGTATATATTTTTAATCAATTGTGTCAGCAAAATCGTCAAAGATCTTTTCAAATTTTAAAGAAGTAGTACTATATTTTAAATTCATTACATATTCCGCTAGATTATAAAAATAATTATGATGTTTTTTTCTCTTTCCAAATCCTGAGTTTGATATTGTTGTTCTTTTCTGCTTCACTATGATATTAATAGTAGGGTGTTTTAAAATTAGAATCAGTAAATTTACTCGTGCTTCGCGCGGAAACTTTATATAACAAAATTTATAAAATAATAATTTAGATCTATCAGTCATTAAAATTAAAATACTATATTATCTTATGTACAAGATTACGCGATAACAAATATTAATAATGTAAAGAAAAATGAAACTTAGTACATCTTATCTTTTTTTTTTGAGACAAGGGTAGGGAGTACATACCAAGATCTGTAACATAAGCAATGTTGTCAGTAATAGTGTCAGTGAGCCACTCATCACGAATCAAGTTCACAAATATTTAGTTGATAAATGTAACTTATCTTATCATTTATCCTTAATAACATAAGTAGAAACTAATGACTGTAAAAATACATACCAAGATCTGTAACATAACCAATGGTGTCGGTGAGTCACTCAATCGTAACCAAGTACACAATTATTTAGTTGTGAAGAAGAAGAAGAAAAGAAGAAGAAAGTTTTAGGATTTTCGTTGTTTTAAAATGAGAGGAAATCCCTCTATTTATAGACAACAAATGATAACCTCCACAAATGTTTATTGTGTCTTGTTGAAAAGGTTACAACTACTTGAAAAAGTCGCTTCCCTTCATAATGGTCACAACCTTTATATAAGTCACAAACTTTCACAAAAGTTTCATTAAAGTCGCAACTGTTCACGAAAGTCGTAACTCTTTGTAAAAGTTACAACTTCTTGCAAAAGTCATAATTTTACATAAAAGTCGCAACTCTTCGTAAAAGTCACAACTCTTCATAAAAGTCACAACTTTTCATGAAGGGGAAGACTAGTTTTGAAAATAAATAAATTTAAAACGAAATTCTTATTTGTGGGAGCGCCACGTAGACGGATCTGAGATTTTCTTTTTTATATATATACATATATGATTAGAAGTCAAGAAGAAGAAAAAAA</genome_strand>
        <mrna_strand>AATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACCCAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGAAATGAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219844" ref_strand="+" ref_description="SGN-E219844 [cLEL-24-I8](-)">
      <seq>agatcaattcatcctgcacctagtgagcatcaagtcaattcagatcttcctccacaggctctgatggtaacggagttttcaaacctggttggaagtatcaaaggggaaggttctaaaccttagaagaagtggcccacgattagtagaaagacaccacctgtggtggatgctgtcaaggcatccatttagaaaggtttccagcccgttgagatcatctattagttggtatttagctatctttcttgtgaaatctgaacgctatgtgttgttgtaactgaatgttgtatttctgaataaggcttgtaagcttctgtttgttgacaatgtgtatgtaatataggtgtttgggaatgaaaacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="68290" stop="79658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68590" g_stop="68944" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68945" i_stop="70663" i_length="1719">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.753" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70664" g_stop="70684" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="376" r_length="21" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E219844" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68590" e_stop="68944"/>
          <exon e_start="70664" e_stop="70684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGAAATGAATTGGCCGAGCTAGTTTGAACAACCTGCATTTTCATGAAAAATAGCAGCCATCCCTTCCTCCCGGATCTCCACGTTAAGGAACCCGGGTATGTATGCTCACGCTCAACGGTCTTGTGATGCTTCAATGATGAGAATCTAGTGTTCTGATACCAAAATTTGTTGAATTTGCGTGATCAACATTTGACACACTATCCAATTCAATCAAACAAGCCCAAATGATCTCAAACTATATGGAGTAATTTAAAAACCATATACATTTTCGAATCTCAAAACCATATGTGAAGCCAATGAAATGAGTCCATGGATTGGTAAGTGGATATAGTTGCTAATGGATATTATCAATTTGCAGGTTGAGTTGATAAAATCCATTACGTTGTTGATTAGTTTTGCATCAAAATGATTAACTAATAAAGTATTTTTTATTAGATCACATCAAAATTATCTTTCCTATAATAAAGAATCAATAGAATTTTAGAATATATTTCATTCAAAAGCTTACCAACTCCTATAATTGTCCAATTTGAGTAAAGATGAATCAAAGTCGTATTTTGATTATGCCAACTTTTTACCACTCTTTTGTTTGCTTTCATATTCTACCAAGCATACATTAGTCCTTTGAACTGTATATATTTTTAATCAATTGTGTCAGCAAAATCGTCAAAGATCTTTTCAAATTTTAAAGAAGTAGTACTATATTTTAAATTCATTACATATTCCGCTAGATTATAAAAATAATTATGATGTTTTTTTCTCTTTCCAAATCCTGAGTTTGATATTGTTGTTCTTTTCTGCTTCACTATGATATTAATAGTAGGGTGTTTTAAAATTAGAATCAGTAAATTTACTCGTGCTTCGCGCGGAAACTTTATATAACAAAATTTATAAAATAATAATTTAGATCTATCAGTCATTAAAATTAAAATACTATATTATCTTATGTACAAGATTACGCGATAACAAATATTAATAATGTAAAGAAAAATGAAACTTAGTACATCTTATCTTTTTTTTTTGAGACAAGGGTAGGGAGTACATACCAAGATCTGTAACATAAGCAATGTTGTCAGTAATAGTGTCAGTGAGCCACTCATCACGAATCAAGTTCACAAATATTTAGTTGATAAATGTAACTTATCTTATCATTTATCCTTAATAACATAAGTAGAAACTAATGACTGTAAAAATACATACCAAGATCTGTAACATAACCAATGGTGTCGGTGAGTCACTCAATCGTAACCAAGTACACAATTATTTAGTTGTGAAGAAGAAGAAGAAAAGAAGAAGAAAGTTTTAGGATTTTCGTTGTTTTAAAATGAGAGGAAATCCCTCTATTTATAGACAACAAATGATAACCTCCACAAATGTTTATTGTGTCTTGTTGAAAAGGTTACAACTACTTGAAAAAGTCGCTTCCCTTCATAATGGTCACAACCTTTATATAAGTCACAAACTTTCACAAAAGTTTCATTAAAGTCGCAACTGTTCACGAAAGTCGTAACTCTTTGTAAAAGTTACAACTTCTTGCAAAAGTCATAATTTTACATAAAAGTCGCAACTCTTCGTAAAAGTCACAACTCTTCATAAAAGTCACAACTTTTCATGAAGGGGAAGACTAGTTTTGAAAATAAATAAATTTAAAACGAAATTCTTATTTGTGGGAGCGCCACGTAGACGGATCTGAGATTTTCTTTTTTATATATATACATATATGATTAGAAGTCAAGAAGAAGAAAAAAA</genome_strand>
        <mrna_strand>AGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATTCAGATCTTCCTCCACAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTTAGAAGAAGTGGCCCACGATTAGTAGAAAGACACCACCTGTGGTGGATGCTGTCAAGGCATCCATTTAGAAAGGTTTCCAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGGAATGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351568" ref_strand="+" ref_description="SGN-E351568 [cTOS-12-D13]">
      <seq>gagcatcaagtcaatacagatcttcctcaagaggctctgatggtaacggagttttcaaacctggttggaagtatcaaaggggaaggttctaaacctgagaagaagtggccaacgattagtagaaagacacaacttgtggtggatgctgtcaaggcatcaattgagaaaggtttcgagcccgttgagatcatctattagttggtatttagctatctttcttgtgaaatctgaacgctatgtgttgttgtaactgaatgttgtatttctgaataaggcttgtaagcttctgtttgttgacaatgtgtatgtaatataggtgtttggaaatgaattggccgagctagtttgaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="68314" stop="69266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68614" g_stop="68973" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E351568" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68614" e_stop="68973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGAAATGAATTGGCCGAGCTAGTTTGAACAACCTGCAT</genome_strand>
        <mrna_strand>GAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGAAATGAATTGGCCGAGCTAGTTTGAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721977" ref_strand="+" ref_description="SGN-E721977 [FC15DD06]">
      <seq>aatcggccgaattgaagaaataaaataaattgaagtggaaaaataagaaaaatttgttatttgaagaaaaaaaatattaatatggcatcatcaataggaccatggttgggtggtggtggacgaagtaaagatatggattttgtaagcccattttcatctgatgtattgggcctgggctttggtggtgaattgggctttggtaatggattgggctttaggaatgatgaaatttctgctttggcccatgctagtgtcgactggcgtgaaactgatcaagctcatgtttttcttgttgatattcctggtgtgaagaaggaagatttaaaggttcagctcgaaaataacatattggagattagcggtgaaagagtaaaagaggaagaaaaaggcgatgacaagtggcaccgcgtggagcgtaaacgtggcagtttctgcagaaaattccggctaccggaaaatgccaacgtggaaggtataagttgtgggcttgaaaacggagttttaacagtgaatgtacccaaaaaagaaacacagcaggttccaaaaaatgttaaggctataaacataacttagtttttgcgcctgtgaatatagtatgtgtgtattaaggcttttaaataagtggatcacttgtatgtacaaattaaaaatatcaaatagtattttttacattttgtgtgattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="75156" stop="18859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74857" g_stop="74567" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="304" r_length="291" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74566" i_stop="73558" i_length="1009">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73557" g_stop="73178" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="684" r_length="380" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73177" i_stop="71289" i_length="1889">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.364" a_score="0.63"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71288" g_stop="71243" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="730" r_length="46" r_score="0.630"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71242" i_stop="71183" i_length="60">
            <donor d_prob="0.944" d_score="0.63"/>
            <acceptor a_prob="0.375" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71182" g_stop="71152" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="761" r_length="31" r_score="0.484"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E721977" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74857" e_stop="74567"/>
          <exon e_start="73557" e_stop="73178"/>
          <exon e_start="71288" e_stop="71243"/>
          <exon e_start="71182" e_stop="71152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAATAAAATGAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAGAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGGCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTGGTTAACCATCTAATCCCTTCTATAACTTTTTTTTTTTTTAATGATATAATTGCGTTTTATAGTTATAATTTTAATAATCGTGTTTATAGTTAATAGTTTTGTTTCTTACGATAGGTTGTGATTTATATATTTCTATTTTGTTTAGAAATTTTTAAATTATCGTTTGTATATTTCTTTTGTCAATATATAAATTAGGTAGTTCATTTATTTAAAAAAAAATAAAAGCCTGATTTTGTTTCAAAACAATGACTTTTTTGGTAACTTTTCACGTAGAAATTTAGAATTTTTTCAAATTATCGTTTGTTATATTTCTGTTTTTGTCAATAGATAAATTAGGTAGTTCATTCATTTAAAAAAAAACTAGTTCTGTTTCAAAACAATGATTTTTTTACAAACATTTTAATTTTAATTTTTTATTTGACATATTTAAAACATTAAAGGACATTTTGGTATATTTAATATACTTTTAATTTTTCTTTTTAACTTCGTTTTTAATTAGGATTTTTTTAAAAAAATAGAGGGAGTATGATTTTTTTTTTAAAATAGAGGGAGTATGATTTTCCATAAATCATATACAAATATTTCATATAAAATTTTTGAATTTTTATATCATCAGGATTTGAATTACACAATTACAAAAAATTTTGGATTTATATAAGGATTTGAATGATATAAATTTTATATTTATACAAATCTTGAGAATCTCAAGAATTGAGAAACTTTTAGTTAAGAGGAATATAGAAAAAATTTACGTGTATTAATTTAATTTTCATTATTATATAATTTTAATGAAGTAAAAACACATTTTAATTAAAGTTTAAATTATAAATAGAAAAAAATTACTGTAGTAATTCAATTTTCATTATTATATAATTTTAATAAAATAAAATACATTTTAATTAACGTTTAAACATACGACATGTGTGTATTTGAATTAGATTGCATGTATTAGATTGGTGTAAATTTTCGGATCCATAACAAGTGGATTGGATTTTGAAATGGTACATAGGTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAGATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTACATTTTGTGTGATTATTTAATGGCCAATTGTGTCCATATGGTCTTTACTAATATTTACTTTTAAAAGAATAATTCTTGAATTTCATGATCTGGGTGTTAAAATTTTTTATCAGTTTAGTGTATTTAGATTTAATTTTTCTCAACAAAATTGTGTCCATCTGGTCTTACTAATATTCATAATTCATTTTAGCTCTTAACTTTTTAGAAGAATAATTCTTCAACTTTGTGAATTTTTATACATCAACAAAGGTTGTCCTAGAAGTTTTTATCAATATACGTTAAAATGTATTAGATTTAATGTCCAGAAACATGTACAAGATGTTTTTTAAGTCTTAAAATGTATTAGATTTAATGTCTAGAAAGATGTACGAGATGTTTTTTTAAAGTCTTTTAGGGATATGTACAAAGAATATTAGTTATTAAAATATATTAAATTTAATGTCTCTAATATTTTAAATTTAATGTCTCTAATGTTCTTTTAGGAACATGTATAAAGAGAGTATTACTCGCTAAGAGAGTATTAATTGCTGTTAAAATATTATATTTAGCGACACAACTGCAATCCAAAAACTAAAATCGATCTTAAAAGCAGTCAACCTATTTAGTCTTTAGCCTGAAGCCCTGAACTCTTGAGATTAAATAATTTTGCAAATACAAAAAATGGAGAGTCAGATTTTTCATTATTATTAATTTTTGTACCATTAGGGTCATTTATTGGGATAATTTTACTTTTAACTATTTGATTTATTGGATATTGAGTTTTATATTTTTTATAATCTGCTAGCTAATATGTAAGATATTGATTAATTTGCTGACAGAATAACAGATGGTATATCGACTAATTTCTAATCTACATGATATTTTTTTTTATTATCCGATGGTTAAGTGGTGATCTATTGACTAATTTCTAAAGTTTTATGGTATTTATTTTCGATAAATGCACCTTATAAAATGGACGATTTTTAAACGACAACAAATTATAAGTTGATTTAGATTTTCAACTGATTGTTTATATTTTCATTGTCACGTGAAAACATTTTTATCAATGACGCGATATATTGTTGCATATTTTTATTCCTTTTTTTTGAATTTCATGAAAAATTTCATTCTATCTCTCTCGTTACGAATAAAAAACTAGAATGAAATCCAGACAAATTTTTTTTGAGTTTTGCTGATTTGTTTTCTTTTTTTTAAAGCAAAATAGTTAATTATTAAAAAAATTGTAAATAAGCGATATATTGTTGCATATTTTTCATGTATAAATCCTAACTTTTTTTCTGAGTTCGCTGACTTGTTTTTTTCTTTTTTAAAGAAAAATAGTTAATTATTTTAAAAAAAATGTAAACAAGTTTTCATAACTTCATGACTTTTGCCTTTAGGAGTTACAAACAAAGGGAAAAATATATAATTTCTTTTATATCTGTGGTAAAATATGATGCTAATATATCTAAAATAAAAATACAAGTATGATAACTTTTAATGGATTAACAGTTTATTCAATAAGAAAATTGGATAATCCACTCTCACCTCAGTAAGCCATTAACTATAAAATTCTAATTTGTTCCTCAACTATTTATTTGATAATCAGTAGCGGATCCAAGATTGTTATTAAAGGATGTCAATAGTTATAGTAAAAAAATATAATTATGAGGATAGTATGACTAGAACCCATGAAATGATTTTCACAATATTTAACTATCAAATTAAATATTTAACTTGTGTCAAGATGTGTTAATGCTTACATATGTATTTACTAAACCAAATTTTAATAGATAGATACAATGTAATTTTTCGACGGAGGGGTGTCTACTCCGCTTTGGTAAAGGTAGATGCGTCATTGTCGATAACTCAATATCAATAACCAATTAGCTAATTATGATTCATTAATCGATTTGGTTTAAAAGAGTTCGGAATCAAAAAAGCAAAAAAAAAATCAAAAATTTTAAAAAGGCACATCAATTTTCTTTTTAACTAAAAGGGCAAAAGCTCCATCACGAATGATTTTTTCAGATGAAATTGACGCCATTACTGAATTAAAAAA</genome_strand>
        <mrna_strand>GAAGAAATAAAATAAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAAAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGGCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAAATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTACATTTTGTGTGATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA............................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721755" ref_strand="+" ref_description="SGN-E721755 [FC15AG08]">
      <seq>gggaagcaagaaataaaatgaattgaagtggaaaaataagaaaaatttgttatttgaagaaaaaaaatattaatatggcatcatcaataggaccatggttgggtggtggtggacgaagtaaagatatggattttgtaagcccattttcatctgatgtattgggcctgggctttggtggtgaattggtctttggtaatggattgggctttaggaatgatgaaatttctgctttggcccatgctagtgtcgactggcgtgaaactgatcaagctcatgtttttcttgttgatattcctggtgtgaagaaggaagatttaaaggttcagctcgaagataacatattggagattagcggtgaaagagtaaaagaggaagaaaaaggcgatgacaagtggcaccgcgtggagcgtaaacgtggcagtttctgcagaaaattccggctaccggaaaatgccaacgtggaaggtataagttgtgggcttgaaaacggagttttaacagtgaatgtacccaaaaaagaaacacagcaggttccaaaaaatgttaaggctataaacataacttagtttttgcgcctgtgaatatagtatgtgtgtattaaggcttttaaataagtggatcacttgtatgtacaaattaaaaatatcaaatagtattttttacattttgtgtgattatttaatggccaattgtgtccatatggtctttactaatatttacttttaaaagaataattcttgaatttaaaaaanaaaaanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="75162" stop="72808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74863" g_stop="74567" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74566" i_stop="73558" i_length="1009">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73557" g_stop="73109" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="746" r_length="449" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="747" polyA_stop="757"/>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E721755" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74863" e_stop="74567"/>
          <exon e_start="73557" e_stop="73109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGCAAGAAATAAAATGAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAGAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGGCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTGGTTAACCATCTAATCCCTTCTATAACTTTTTTTTTTTTTAATGATATAATTGCGTTTTATAGTTATAATTTTAATAATCGTGTTTATAGTTAATAGTTTTGTTTCTTACGATAGGTTGTGATTTATATATTTCTATTTTGTTTAGAAATTTTTAAATTATCGTTTGTATATTTCTTTTGTCAATATATAAATTAGGTAGTTCATTTATTTAAAAAAAAATAAAAGCCTGATTTTGTTTCAAAACAATGACTTTTTTGGTAACTTTTCACGTAGAAATTTAGAATTTTTTCAAATTATCGTTTGTTATATTTCTGTTTTTGTCAATAGATAAATTAGGTAGTTCATTCATTTAAAAAAAAACTAGTTCTGTTTCAAAACAATGATTTTTTTACAAACATTTTAATTTTAATTTTTTATTTGACATATTTAAAACATTAAAGGACATTTTGGTATATTTAATATACTTTTAATTTTTCTTTTTAACTTCGTTTTTAATTAGGATTTTTTTAAAAAAATAGAGGGAGTATGATTTTTTTTTTAAAATAGAGGGAGTATGATTTTCCATAAATCATATACAAATATTTCATATAAAATTTTTGAATTTTTATATCATCAGGATTTGAATTACACAATTACAAAAAATTTTGGATTTATATAAGGATTTGAATGATATAAATTTTATATTTATACAAATCTTGAGAATCTCAAGAATTGAGAAACTTTTAGTTAAGAGGAATATAGAAAAAATTTACGTGTATTAATTTAATTTTCATTATTATATAATTTTAATGAAGTAAAAACACATTTTAATTAAAGTTTAAATTATAAATAGAAAAAAATTACTGTAGTAATTCAATTTTCATTATTATATAATTTTAATAAAATAAAATACATTTTAATTAACGTTTAAACATACGACATGTGTGTATTTGAATTAGATTGCATGTATTAGATTGGTGTAAATTTTCGGATCCATAACAAGTGGATTGGATTTTGAAATGGTACATAGGTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAGATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTACATTTTGTGTGATTATTTAATGGCCAATTGTGTCCATATGGTCTTTACTAATATTTACTTTTAAAAGAATAATTCTTGAATTTC</genome_strand>
        <mrna_strand>GGGAAGCAAGAAATAAAATGAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAAAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGTCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAGATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTACATTTTGTGTGATTATTTAATGGCCAATTGTGTCCATATGGTCTTTACTAATATTTACTTTTAAAAGAATAATTCTTGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723022" ref_strand="+" ref_description="SGN-E723022 [FC19AD12]">
      <seq>tggcggccaaatcggccgaattgggaagcaagaaataccatgaattgaagtggaaaaataagaaaaatttgttatttgaagaaaaaaaatattaatatggcatcatcaataggaccatggttgggtggtggtggacgaagtaaagatatggattttgtaagcccattttcatctgatgtattgggcctgggctttggtggtgaattgggctttggtaatggattgggctttaggaatgatgaaatttctgctttggcccatgctagtgtcgactggcgtgaaactgatcaagctcatgtttttcttgttgatattcctggtgtgaagaaggaagatttaaaggttcagctcgaaaataacatattggagattagcggtgaaagagtaaaagaggaagaaaaaggcgatgacaagtggcaccgcgtggagcgtaaacgtggcagtttctgcagaaaattccggctaccggaaaatgccaacgtggaaggtataagttgtgggcttgaaaacggagttttaacagtgaatgtacccaaaaaagaaacacagcaggttccaaaaaatgttaaggctataaacataacttagtttttgcgcctgtgaatatagtatgtgtgtattaaggcttttaaataagtggatcacttgtatgtacaaattaaaaatatcaaatagtattttttacattttgtgtgattatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="75164" stop="72873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74862" g_stop="74567" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="319" r_length="296" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74566" i_stop="73558" i_length="1009">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73557" g_stop="73174" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="703" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="716"/>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E723022" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74862" e_stop="74567"/>
          <exon e_start="73557" e_stop="73174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCAAGAAATAAAATGAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAGAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGGCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTGGTTAACCATCTAATCCCTTCTATAACTTTTTTTTTTTTTAATGATATAATTGCGTTTTATAGTTATAATTTTAATAATCGTGTTTATAGTTAATAGTTTTGTTTCTTACGATAGGTTGTGATTTATATATTTCTATTTTGTTTAGAAATTTTTAAATTATCGTTTGTATATTTCTTTTGTCAATATATAAATTAGGTAGTTCATTTATTTAAAAAAAAATAAAAGCCTGATTTTGTTTCAAAACAATGACTTTTTTGGTAACTTTTCACGTAGAAATTTAGAATTTTTTCAAATTATCGTTTGTTATATTTCTGTTTTTGTCAATAGATAAATTAGGTAGTTCATTCATTTAAAAAAAAACTAGTTCTGTTTCAAAACAATGATTTTTTTACAAACATTTTAATTTTAATTTTTTATTTGACATATTTAAAACATTAAAGGACATTTTGGTATATTTAATATACTTTTAATTTTTCTTTTTAACTTCGTTTTTAATTAGGATTTTTTTAAAAAAATAGAGGGAGTATGATTTTTTTTTTAAAATAGAGGGAGTATGATTTTCCATAAATCATATACAAATATTTCATATAAAATTTTTGAATTTTTATATCATCAGGATTTGAATTACACAATTACAAAAAATTTTGGATTTATATAAGGATTTGAATGATATAAATTTTATATTTATACAAATCTTGAGAATCTCAAGAATTGAGAAACTTTTAGTTAAGAGGAATATAGAAAAAATTTACGTGTATTAATTTAATTTTCATTATTATATAATTTTAATGAAGTAAAAACACATTTTAATTAAAGTTTAAATTATAAATAGAAAAAAATTACTGTAGTAATTCAATTTTCATTATTATATAATTTTAATAAAATAAAATACATTTTAATTAACGTTTAAACATACGACATGTGTGTATTTGAATTAGATTGCATGTATTAGATTGGTGTAAATTTTCGGATCCATAACAAGTGGATTGGATTTTGAAATGGTACATAGGTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAGATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTACATTTTGTGTGATTATTTA</genome_strand>
        <mrna_strand>GGAAGCAAGAAATACCATGAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAAAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGGCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAAATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTACATTTTGTGTGATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723172" ref_strand="+" ref_description="SGN-E723172 [FC19CE12]">
      <seq>aatcggccgaattgagctgtatttatttcttggaagcaagaaataaaatgaattgaagtggaaaaataagaaaaatttgttatttgaagaaaaaaaatattaatatggcatcatcaataggaccatggttgggtggtggtggacgaagtagagatatggattttgtaagcccattttcatctgatgtattgggcctgggctttggtggtgaattgggctttggtaatggattgggctttaggaatgatgaaatttctgctttggcccatgctagtgtcgactggcgtgaaactgatcaagctcatgtttttcttgttgatattcctggtgtgaagaaggaagatttaaaggttcagctcgaagataacatattggagattagcggtgaaagagtaaaagaggaagaaaaaggcgatgacaagtggcaccgcgtggagcgtaaacgtggcagtttctgcagaaaattccggctaccggaaaatgccaacgtggaaggtataagttgtgggcttgaaaacggagttttaacagtgaatgtacccaaaaaagaaacacagcaggttccaaaaaatgttaaggctataaacataacttagtttttgcgcctgtgaatatagtatgtgtgtattaaggcttttaaataagtggatcacttgtatgtacaaattaaaaatatcaaatagtattttttncnnnnnaaaaannnnnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="75184" stop="72892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74877" g_stop="74567" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="327" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74566" i_stop="73558" i_length="1009">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73557" g_stop="73187" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="698" r_length="371" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="711" polyA_stop="754"/>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E723172" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74877" e_stop="74567"/>
          <exon e_start="73557" e_stop="73187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATTTATTTCTTGGAAGCAAGAAATAAAATGAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAGAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGGCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTGGTTAACCATCTAATCCCTTCTATAACTTTTTTTTTTTTTAATGATATAATTGCGTTTTATAGTTATAATTTTAATAATCGTGTTTATAGTTAATAGTTTTGTTTCTTACGATAGGTTGTGATTTATATATTTCTATTTTGTTTAGAAATTTTTAAATTATCGTTTGTATATTTCTTTTGTCAATATATAAATTAGGTAGTTCATTTATTTAAAAAAAAATAAAAGCCTGATTTTGTTTCAAAACAATGACTTTTTTGGTAACTTTTCACGTAGAAATTTAGAATTTTTTCAAATTATCGTTTGTTATATTTCTGTTTTTGTCAATAGATAAATTAGGTAGTTCATTCATTTAAAAAAAAACTAGTTCTGTTTCAAAACAATGATTTTTTTACAAACATTTTAATTTTAATTTTTTATTTGACATATTTAAAACATTAAAGGACATTTTGGTATATTTAATATACTTTTAATTTTTCTTTTTAACTTCGTTTTTAATTAGGATTTTTTTAAAAAAATAGAGGGAGTATGATTTTTTTTTTAAAATAGAGGGAGTATGATTTTCCATAAATCATATACAAATATTTCATATAAAATTTTTGAATTTTTATATCATCAGGATTTGAATTACACAATTACAAAAAATTTTGGATTTATATAAGGATTTGAATGATATAAATTTTATATTTATACAAATCTTGAGAATCTCAAGAATTGAGAAACTTTTAGTTAAGAGGAATATAGAAAAAATTTACGTGTATTAATTTAATTTTCATTATTATATAATTTTAATGAAGTAAAAACACATTTTAATTAAAGTTTAAATTATAAATAGAAAAAAATTACTGTAGTAATTCAATTTTCATTATTATATAATTTTAATAAAATAAAATACATTTTAATTAACGTTTAAACATACGACATGTGTGTATTTGAATTAGATTGCATGTATTAGATTGGTGTAAATTTTCGGATCCATAACAAGTGGATTGGATTTTGAAATGGTACATAGGTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAGATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTACATTTT</genome_strand>
        <mrna_strand>CTGTATTTATTTCTTGGAAGCAAGAAATAAAATGAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAGAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGGCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAGATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTNCNNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422797" ref_strand="+" ref_description="SGN-E422797 [STM-41-C9]">
      <seq>cccacgccaccccacccccaattgtacatttttgtctacttgatcagttgttgctggcccaagtgcttgagctgttcccttttcaaattcagcagtatatgaatattcatttgcattttcagcagccaaatcatctggagcttcactctcctggagatcaagggagactttgactctgtctttccacccctcaagggcatcacccacactacgacaagggttacgttgaatcctttgatgtgatgaatcagctggacgtaaaggagtttcacgatgatcactgcccagtctttgtccatttgaagaatcagaagccatgatttcaaccatagaggcatcgggggaacctctcatgggagcaaggtcatgtgtgaagccactaacattaagatcccattcccttcctgagcgagaacgtcttaaaattgggttggttgaaattcacctctaggctcagacgcagcagttgggacattatcactcacagattgagaagtgtccgattgcagcatctctctattttctgatgttggttccttttttgtgtcatttgcaggatcaccttcttcaccagctcctccagaactttcctccaaatgctcagggtctgcctcatcaaaagttgcatctgaatcagcgctttcatctccctcattgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="80395" stop="81633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80699" g_stop="81333" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="662" r_length="640" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E422797" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80699" e_stop="81333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACATTTTTGTCTACTTGATCAGCTGTTGCTGGCCCAAGTGCTTGCGCTGTTCCCTTTTCAAATTCAGCAGTATATGAATATTCATTTGCATTTTCAGCAGCCAAATCATCTGGAGCTTCACTCTTCTGGAGGTCAAGGGAGACTTTGACTCTGTCTTTCCACCCCTCAAAGGCATCACCCACACTACGACAAGGGTTAGGTTGAATCCTTTGACGTGATGAATCAGCTGGAGGTAAAGGATTTTCAGGTTGATCACTGCCCAGCTTTTGTCCATTTGAAGAATCAGAAGCCATGATTTCAACCATAGAGGCATCAGGCAAACCTCTCATGGGAGCAAGGTCATGT-TGAAGCCCACTAACA-TCAGATCCC-TTCGCTTCAGGAGC-AGCATCT-TTTAAATTTGCTTGATT-ATATTCACCTCTAGGCTCAGATGCAGCAGTTGGGACATTATCACCCACAGATTGAGAAGTGTCCGATTGCAGCATCTCTCTATTTTCTGTTGTTGGTTCCTTTTTTGTGTCATTTGCAGGATCACCTTCTTCGCCAGCTCCTCCAGAACTTTCATCCAAATGCTCAGGGTCTGCCTCATCAAAAGTTGCATCTGAATCAGCTCTTTCATCTCCCTCATTTTCATC</genome_strand>
        <mrna_strand>TGTACATTTTTGTCTACTTGATCAGTTGTTGCTGGCCCAAGTGCTTGAGCTGTTCCCTTTTCAAATTCAGCAGTATATGAATATTCATTTGCATTTTCAGCAGCCAAATCATCTGGAGCTTCACTCTCCTGGAGATCAAGGGAGACTTTGACTCTGTCTTTCCACCCCTCAAGGGCATCACCCACACTACGACAAGGGTTACGTTGAATCCTTTGATGTGATGAATCAGCTGGACGTAAAGGAGTTTCACGATGATCACTGCCCAGTCTTTGTCCATTTGAAGAATCAGAAGCCATGATTTCAACCATAGAGGCATCGGGGGAACCTCTCATGGGAGCAAGGTCATGTGTGAAG-CCACTAACATTAAGATCCCATTCCCTTCCTGAGCGAGAACGTCTTAAAATTGGGTTGGTTGAAATTCACCTCTAGGCTCAGACGCAGCAGTTGGGACATTATCACTCACAGATTGAGAAGTGTCCGATTGCAGCATCTCTCTATTTTCTGATGTTGGTTCCTTTTTTGTGTCATTTGCAGGATCACCTTCTTCACCAGCTCCTCCAGAACTTTCCTCCAAATGCTCAGGGTCTGCCTCATCAAAAGTTGCATCTGAATCAGCGCTTTCATCTCCCTCATTGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449082" ref_strand="+" ref_description="SGN-E449082 [cSTS-5-E20]">
      <seq>cccacgccaccccacccccaattgtacatttttgtctacttgatcagttgttgctggcccaagtgcttgagctgttcccttttcaaattcagcagtatatgaatattcatttgcattttcagcagccaaatcatctggagcttcactctcctggagatcaagggagactttgactctgtctttccacccctcaagggcatcacccacactacgacaagggttaggttgaatcctttgatgtgatgaatcagctggaggtaaaggattttcaggttgatcactgcccagtttttgtccatttgaagaatcagaagccatgatttcaaccatagaggcatcgggaaaacctctcatgggagcaaggtcatgttgaagcccactaacatcagatcccttcgcttcaggagcaatatcttttaaatttgcttgattaaattcacctctaggctcagacgcagcagttgggacattatcactcacagattgagaagtgtccgattgcagcatctctctattttctgttgttggttccttttttgtgtcatttgcaggatcaccttcttcaccagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="80395" stop="81548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80699" g_stop="81248" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="572" r_length="550" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E449082" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80699" e_stop="81248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACATTTTTGTCTACTTGATCAGCTGTTGCTGGCCCAAGTGCTTGCGCTGTTCCCTTTTCAAATTCAGCAGTATATGAATATTCATTTGCATTTTCAGCAGCCAAATCATCTGGAGCTTCACTCTTCTGGAGGTCAAGGGAGACTTTGACTCTGTCTTTCCACCCCTCAAAGGCATCACCCACACTACGACAAGGGTTAGGTTGAATCCTTTGACGTGATGAATCAGCTGGAGGTAAAGGATTTTCAGGTTGATCACTGCCCAGCTTTTGTCCATTTGAAGAATCAGAAGCCATGATTTCAACCATAGAGGCATCAGGCAAACCTCTCATGGGAGCAAGGTCATGTTGAAGCCCACTAACATCAGATCCCTTCGCTTCAGGAGCAGCATCTTTTAAATTTGCTTGATTATATTCACCTCTAGGCTCAGATGCAGCAGTTGGGACATTATCACCCACAGATTGAGAAGTGTCCGATTGCAGCATCTCTCTATTTTCTGTTGTTGGTTCCTTTTTTGTGTCATTTGCAGGATCACCTTCTTCGCCAGCTC</genome_strand>
        <mrna_strand>TGTACATTTTTGTCTACTTGATCAGTTGTTGCTGGCCCAAGTGCTTGAGCTGTTCCCTTTTCAAATTCAGCAGTATATGAATATTCATTTGCATTTTCAGCAGCCAAATCATCTGGAGCTTCACTCTCCTGGAGATCAAGGGAGACTTTGACTCTGTCTTTCCACCCCTCAAGGGCATCACCCACACTACGACAAGGGTTAGGTTGAATCCTTTGATGTGATGAATCAGCTGGAGGTAAAGGATTTTCAGGTTGATCACTGCCCAGTTTTTGTCCATTTGAAGAATCAGAAGCCATGATTTCAACCATAGAGGCATCGGGAAAACCTCTCATGGGAGCAAGGTCATGTTGAAGCCCACTAACATCAGATCCCTTCGCTTCAGGAGCAATATCTTTTAAATTTGCTTGATTAAATTCACCTCTAGGCTCAGACGCAGCAGTTGGGACATTATCACTCACAGATTGAGAAGTGTCCGATTGCAGCATCTCTCTATTTTCTGTTGTTGGTTCCTTTTTTGTGTCATTTGCAGGATCACCTTCTTCACCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414838" ref_strand="-" ref_description="SGN-E414838 [STM-20-C2]">
      <seq>acggacatcatggactgattggggtttgatttgcctgtcgagggtgatgaagggatgcaatttgcatgtctgatgggattcttttacaggctctaaagcagggatcatgggtgcttttggatgactcaatcttgcttcacagtctgtcttggaggggttaaatgctattttggaccatcgggctgaggttttcattccagagttaggtcgcactttcaagtgcccaccgtctttcagagtttttgcttgtcaaaatccttaaaatcagggtgggggacggaaaggccttccaaagtccttcctcaacagatttatgaaggtttatgtcgatgagctagttgaggatgactatcatgctatttctagttcgctctatccaacaatttcacgttctcttctctctaatctggttttatttaataagagattacatgaagaaacaatgttgcttcgcaaatttgctcaagaaggatccccttgggagttcaatctccgagatgtaattcgttcctgtgaacttggatttatcccgggaaatgttgttgtatgctgcaaattgggtatttgaacaggctactgaaagtgattacaagctttatcttctgttgttttcccatgttggttctctgttacaacaacattctttagtttttattcctctattctggcaaaggaattggaacatccaatatggaaacatatttttagttgtcgtcggaaaaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="104898" stop="101331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104598" g_stop="104509" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104508" i_stop="104432" i_length="77">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104431" g_stop="104366" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="154" r_length="65" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104365" i_stop="104253" i_length="113">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104252" g_stop="104088" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="319" r_length="165" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104087" i_stop="104001" i_length="87">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104000" g_stop="103808" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="512" r_length="193" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103807" i_stop="101842" i_length="1966">
            <donor d_prob="0.303" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101841" g_stop="101617" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="729" r_length="217" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E414838" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414838" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104598" e_stop="104509"/>
          <exon e_start="104431" e_stop="104366"/>
          <exon e_start="104252" e_stop="104088"/>
          <exon e_start="104000" e_stop="103808"/>
          <exon e_start="101841" e_stop="101617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGACATCATGGACTTGTTTGGGTCTGATTTACCTGTGGAGGGTGATGAAGGGATGCAATTTGCGTGGTCTGATGGAATTCTTTTACAGGTGTGTTTATGTTCCTTCAGTAGAATGGCTTGTTTCAGTAAATCAAAATAATTTGCATTAATTTGCTGTATTTCCAGGCTTTAAAGCAGGGATCATGGGTGCTTTTGGATGAACTCAATCTTGCTTCACAGTCTGTCTTGGAGGTCGAAATCTACACTTTTACCTTCATACGTGTTCTGTTTCTATGCAGCAGTTATCTTATTCTCTTAATTCCCTCACTTAGTTAACCAGTTTTTTATTTTTATTATGAAAACAGGGGTTAAATGCTATTTTGGACCATCGGGCTGAGGTATTCATTCCAGAGTTAGGTCGTACTTTCAAGTGCCCACCTTCTTTCAGAGTTTTTGCTTGTCAGAATCCTTCAAATCAAGGTGGGGGACGGAAAGGTCTTCCAAAGTCCTTCCTCAACAGATTTATGAAGGTCTGCCTTGCCACTGTTTACAATTGATTGCAGTACATGAGTGAATGAAAGAGTTACTAGGAATTATCTCATGCTTGTTGGTTTCAGGTTTATGTCGATGAGCTAGTTGAGGATGACTATCTTGCTATTTCTAGTTCGCTGTATCCAACAATTTCACGTTCTCTTCTCTCTAATCTGGTTTTATTTAATAAGAGATTACATGAAGAAATAATGTTGCTTCACAAATTTGCTCAAGAAGGATCCCCTTGGGAGTTCAATCTCCGAGATGTAATTCGTTCCTGTGAAATCATAAAAGGTCTGTTCTTTTGTTCTTGACGGCCTTTTCTCATATCAGTCTTACAGGATTGACCTCAAATACTTGAATTTCGCTTTTCAGATGCCCCAAGTATATCAGAATCTGATTGCTTTCTGAATCCTGTTTATGTTCAAAGAATGCGGACAGCTGTTGATAGATTGGAGGTCTTAAAACTTTATGAACAGGTATTCAAAATGAAGCCCAGTATAAATCCTCATCCGCGGGTTCAGCTGAATACCAAGTATTTGATTGTTGGGAATGTATCTATCGAACGAAATCCTTACCTGTCACCTGGAGTGTCCAACAGCGACCTTAAAATTTTGCCTGGCTTCCGGAATAGCTTGGAAGCTGTAGCACAATGTGTTAAAAAACAGTGGCTATGCATATTAGTTGGACCTGCATCCTCTGGTAAAACTTCATTGATACGATTGCTTGCTCAGCTGACAGGAAATGTACTTAATGAGTTGAATCTTTCTTCTGCAACTGATATTTCTGAGCTCCTTGGAAGCTTTGAGCAACACAATGCTGTTCGAAAATACCGTCTTGCCATCACTTGGATTGAATCCTTCATAAATGAATATTGTGGTCTGCAGCTTGAATCTTCATGCAAGGAATTTATGATGAGAAATGAGCTGTTTATTCTGTGGCTGTCTTTCTTATCAAGCATCAAGCACGACCCTCCAACAAGTTCTTGCTCTTCGTATGTTGATACTTGGAGGACGAAGTACTTTGAGTCTGCCTCTACGTTGGTTAACATTATTGAACATCTAAAGTTGGTGGTTGAGGAAACATCATTGCCTTTGTCTTGGTCTATGAAGGATTTGGATTCAACTCTTGCAATGATCAAGAAATTTGAAGAAGGTCACTCAAAAAGGACACATTCCTCGAAGTTTGAGTGGGTAACTGGCATGCTTGTAAAGGCTATAGAAAATGGAGAGTGGATAGTATTGGATAATGCAAATCTCTGTAACCCAACGGTCTGTATGCTCTCTCTTCCATGCATGGTCTTTTAACTTTTCATTTTTTTTTTTTGCAATCTCTATAGTGTGTAAAATGTTAATCTTAAGGTGCTGTGTCTTGTTTACAATGGTTATTTGGTACCTCTTGATTTGTGCAGGTTCTTGACAGGATAAATTCTTTAGTTGAACAATCTGGATCCATCACCATAAATGAATGTGGAACAGTTGAAGGAAAGCCTGTAATTCTTCATCCACACCCTAAGTTTCGGATGTTTTTAACAGTTAACCCTCTAAATGGTGAAGTTTCACGTGCAATGAGAAATAGAGGGGTTGAAATTTTTATGATGGAGCCTGATTGGTTGTTTGATGACAAATGCACTGAAATTGAAATCGAGCTCGAGAATGCAAAGAGATACATCATTCTTTCTGGGGTACCTTCTGGTAAGTTAGTTGATTTGATGGCCAATGCCCACATGACTGCAAAGGTTGAAGGTGCACTGCTCAAAATTAGGATCACACTTCTTGAACTTGCACGCTGGGTGCAGTTGTTTCAGCAACTTCTTACAAACGGTAACCAGCTTTCATGGAGCTTGCAAACGAGTTGGCAGCATACATATGTTTCTTTATTTGGTGTTGATGGAGGCAAGAGTCTTGTTGATCAAGCGGGGTTTCCCATTTCTCTAATACCAAAGTTTCAGGACTTCAACTCCTCTCAAGCTGGCTTGTTATCTTTGCCAGGGGGATGGCCTGCACCCCTGAAATTGAGGGACTATCTTATATATTCTAAAGAAACTTGTATAAGGCAAAATTGCATGTACCTCGAGTTCCTGGGAGCTCAGACTGCCTGTTATTCAACTTCTGCTGCATTACGTAATGCACTGGCTCCTACTTCTGTCGTTAGCTCACTCGTGATGGATACACGGCTCTTGCATGCCCTGATGTTTCCTAAAAATGCAAGCTGTCAAGCTGATGTTTGTGGCGGGGCAAAAGAACTTAACTTGGATTTAGCCCGGGAAATGTTGTTGTATGCTGCGAATTGGGTATTTGAACAGGCTACTGAAAGTGATTACAAGCTTTATCTTCTTTGGTTTTCCCATGTTGGTTCTCTGTTACAACAATATTCTTCATTCTTTAGTTTTTATTCCTCTATTCTGGCAAAGGAATTGGAACATCCAATATGGAATCAGATTTTTAGTTGTCGTCACGAGATTGTGTCT</genome_strand>
        <mrna_strand>ACGGACATCATGGACTGATTGGGGTTTGATTTGCCTGTCGAGGGTGATGAAGGGATGCAATTTGCAT-GTCTGATGGGATTCTTTTACAG.............................................................................GCTCTAAAGCAGGGATCATGGGTGCTTTTGGATG-ACTCAATCTTGCTTCACAGTCTGTCTTGGAG.................................................................................................................GGGTTAAATGCTATTTTGGACCATCGGGCTGAGGTTTTCATTCCAGAGTTAGGTCGCACTTTCAAGTGCCCACCGTCTTTCAGAGTTTTTGCTTGTCAAAATCCTTAAAATCAGGGTGGGGGACGGAAAGGCCTTCCAAAGTCCTTCCTCAACAGATTTATGAAG.......................................................................................GTTTATGTCGATGAGCTAGTTGAGGATGACTATCATGCTATTTCTAGTTCGCTCTATCCAACAATTTCACGTTCTCTTCTCTCTAATCTGGTTTTATTTAATAAGAGATTACATGAAGAAACAATGTTGCTTCGCAAATTTGCTCAAGAAGGATCCCCTTGGGAGTTCAATCTCCGAGATGTAATTCGTTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTTGGATTTATCCCGGGAAATGTTGTTGTATGCTGCAAATTGGGTATTTGAACAGGCTACTGAAAGTGATTACAAGCTTTATCTTCTGTTGTTTTCCCATGTTGGTTCTCTGTTACAAC-A-A-----CATTCTTTAGTTTTTATTCCTCTATTCTGGCAAAGGAATTGGAACATCCAATATGGAAACATATTTTTAGTTGTCGTC-GGAAAAAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432405" ref_strand="+" ref_description="SGN-E432405 [STM-57-A21]">
      <seq>ttttttgattccatattggatgttccaattcctttgccagaatagaggaataaaaactaaagaatgttgttgtaacagagaaccaacatgggaaaacaacagaagataaagcttgtaatcactttcagtagcctgttcaaatacccaatttgcagcatacaacaacatttcccgggataaatccaagttcagttcttttgccccgtcacaaacatcagcttgacagcttgaaattttaggaaacatcagggcatgcaagagccttgtatccatcacgagtgaggtaaccacagaagttggagccagtgcattacgtaatgcagcagaagttgaataacaggcagtctgagctcccaggaactcgaggtacatgcaattttgccttatacaagtttcttttgaatatataagatagtccctcaatttcaggggtgctggccatccccctggcatagataacaaaccagcttgagaggagttaaagtcctgaaactttggtattagagaaatagggacccccacctgatcaacaatactcttgcctccatcaacaccaaataaagatacataggtatgctgccaattcgtttgcaagctccatgagaactggttaccgtttgtaagaagttgctgaaacaattgcacccagcgtgcaagttcaagaagtgtgatcctaattttcagcagtgcaccttcaacctttgcattcatgtgggcattggccatcaaatcaactaaattaccagcagctaccccagaaaagacaatgtatctctttgcatttctcagctcgatatcaatttcagtgcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="101346" stop="102762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101643" g_stop="102462" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="813" r_length="813" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E432405" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101643" e_stop="102462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTGATTCCATATTGGATGTTCCAATTCCTTTGCCAGAATAGAGGAATAAAAACTAAAGAATGAAGAATATTGTTGTAACAGAGAACCAACATGGGAAAACCAAAGAAGATAAAGCTTGTAATCACTTTCAGTAGCCTGTTCAAATACCCAATTCGCAGCATACAACAACATTTCCCGGGCTAAATCCAAGTTAAGTTCTTTTGCCCCGCCACAAACATCAGCTTGACAGCTTGCATTTTTAGGAAACATCAGGGCATGCAAGAGCCGTGTATCCATCACGAGTGAGCTAACGACAGAAGTAGGAGCCAGTGCATTACGTAATGCAGCAGAAGTTGAATAACAGGCAGTCTGAGCTCCCAGGAACTCGAGGTACATGCAATTTTGCCTTATACAAGTTTCTTTAGAATATATAAGATAGTCCCTCAATTTCAGGGGTGCAGGCCATCCCCCTGGCAAAGATAACAAGCCAGCTTGAGAGGAGTTGAAGTCCTGAAACTTTGGTATTAGAGAAATGGGAAACCCCGCTTGATCAACAAGACTCTTGCCTCCATCAACACCAAATAAAGAAACATATGTATGCTGCCAACTCGTTTGCAAGCTCCATGAAAGCTGGTTACCGTTTGTAAGAAGTTGCTGAAACAACTGCACCCAGCGTGCAAGTTCAAGAAGTGTGATCCTAATTTTGAGCAGTGCACCTTCAACCTTTGCAGTCATGTGGGCATTGGCCATCAAATCAACTAACTTACCAGAAGGTACCCCAGAAAGAATGATGTATCTCTTTGCATTCTCGAGCTCGATTTCAATTTCAGTGCATTT</genome_strand>
        <mrna_strand>TTTTTTGATTCCATATTGGATGTTCCAATTCCTTTGCCAGAATAGAGGAATAAAAACTAAAGAAT---G----TTGTTGTAACAGAGAACCAACATGGGAAAACAACAGAAGATAAAGCTTGTAATCACTTTCAGTAGCCTGTTCAAATACCCAATTTGCAGCATACAACAACATTTCCCGGGATAAATCCAAGTTCAGTTCTTTTGCCCCGTCACAAACATCAGCTTGACAGCTTGAAATTTTAGGAAACATCAGGGCATGCAAGAGCCTTGTATCCATCACGAGTGAGGTAACCACAGAAGTTGGAGCCAGTGCATTACGTAATGCAGCAGAAGTTGAATAACAGGCAGTCTGAGCTCCCAGGAACTCGAGGTACATGCAATTTTGCCTTATACAAGTTTCTTTTGAATATATAAGATAGTCCCTCAATTTCAGGGGTGCTGGCCATCCCCCTGGCATAGATAACAAACCAGCTTGAGAGGAGTTAAAGTCCTGAAACTTTGGTATTAGAGAAATAGGGACCCCCACCTGATCAACAATACTCTTGCCTCCATCAACACCAAATAAAGATACATAGGTATGCTGCCAATTCGTTTGCAAGCTCCATGAGAACTGGTTACCGTTTGTAAGAAGTTGCTGAAACAATTGCACCCAGCGTGCAAGTTCAAGAAGTGTGATCCTAATTTTCAGCAGTGCACCTTCAACCTTTGCATTCATGTGGGCATTGGCCATCAAATCAACTAAATTACCAGCAGCTACCCCAGAAAAGACAATGTATCTCTTTGCATTTCTCAGCTCGATATCAATTTCAGTGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401515" ref_strand="+" ref_description="SGN-E401515 [PPC-4-M20]">
      <seq>ttttttgattccatattggatgttccaattcctttgccagaatagaggaataaaaactaaagaatgttgttgtaacagagaaccaacatgggaaaacaacagaagataaagcttgtaatcactttcagtagcctgttcaaatacccaatttgcagcatacaacaacatttcccgggataaatccaagttcagttcttttgccccgtcacaaacatcagcttgacagcttgaaattttaggaaacatcagggcatgcaagagccttgtatccatcacgagtgaggtaaccacagaagttggagccagtgcattacgtaatgcagcagaagttgaataacaggcagtctgagctcccaggaactcgaggtacatgcaattttgccttatacaagtttcttttgaatatataagatagtccctcaatttcaggggtgctggccatccccctggcatagataacaaaccagcttgagaggagttaaagtcctgaaactttggtattagagaaatagggacccccacctgatcaacaatactcttgcctccatcaacaccaaataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="+" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="101346" stop="102512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101643" g_stop="102212" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="+" ref_id="SGN-E401515" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101643" e_stop="102212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTGATTCCATATTGGATGTTCCAATTCCTTTGCCAGAATAGAGGAATAAAAACTAAAGAATGAAGAATATTGTTGTAACAGAGAACCAACATGGGAAAACCAAAGAAGATAAAGCTTGTAATCACTTTCAGTAGCCTGTTCAAATACCCAATTCGCAGCATACAACAACATTTCCCGGGCTAAATCCAAGTTAAGTTCTTTTGCCCCGCCACAAACATCAGCTTGACAGCTTGCATTTTTAGGAAACATCAGGGCATGCAAGAGCCGTGTATCCATCACGAGTGAGCTAACGACAGAAGTAGGAGCCAGTGCATTACGTAATGCAGCAGAAGTTGAATAACAGGCAGTCTGAGCTCCCAGGAACTCGAGGTACATGCAATTTTGCCTTATACAAGTTTCTTTAGAATATATAAGATAGTCCCTCAATTTCAGGGGTGCAGGCCATCCCCCTGGCAAAGATAACAAGCCAGCTTGAGAGGAGTTGAAGTCCTGAAACTTTGGTATTAGAGAAATGGGAAACCCCGCTTGATCAACAAGACTCTTGCCTCCATCAACACCAAATAAAG</genome_strand>
        <mrna_strand>TTTTTTGATTCCATATTGGATGTTCCAATTCCTTTGCCAGAATAGAGGAATAAAAACTAAAGAAT---G----TTGTTGTAACAGAGAACCAACATGGGAAAACAACAGAAGATAAAGCTTGTAATCACTTTCAGTAGCCTGTTCAAATACCCAATTTGCAGCATACAACAACATTTCCCGGGATAAATCCAAGTTCAGTTCTTTTGCCCCGTCACAAACATCAGCTTGACAGCTTGAAATTTTAGGAAACATCAGGGCATGCAAGAGCCTTGTATCCATCACGAGTGAGGTAACCACAGAAGTTGGAGCCAGTGCATTACGTAATGCAGCAGAAGTTGAATAACAGGCAGTCTGAGCTCCCAGGAACTCGAGGTACATGCAATTTTGCCTTATACAAGTTTCTTTTGAATATATAAGATAGTCCCTCAATTTCAGGGGTGCTGGCCATCCCCCTGGCATAGATAACAAACCAGCTTGAGAGGAGTTAAAGTCCTGAAACTTTGGTATTAGAGAAATAGGGACCCCCACCTGATCAACAATACTCTTGCCTCCATCAACACCAAATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432406" ref_strand="+" ref_description="SGN-E432406 [STM-57-A21]">
      <seq>ggtctatgaaggatttggatacaactcttgcaatgatcaagaaatttgaaggtcactcaaaaaggacacattcctcaaagtttgagtgggtaactggcatgcttgtaaaggctatagaaaatggagagtggatagtattagataatgcaaatctctgtaacccaacggttcttgacaggataaattctttagttgaacaatctggatccatcaccataaatgaatgtggaacaattgaaggaaagcctgtaattcttcatccacaccctaagtttcggatgtttctaacagttaaccctctaaatggtgaggtttcacgtgcaatgagaaatagaggggttgaaattttcatgatggagcctgattggttgttttatgacaaatgcactgaaattgatatcgagcttgagaatgcaaagagatacattgttctttctggggtagctgctggtaatttagttgatttgatggccaatgcccacatgaatgcaaaggttgaaggtgcactgctgaaaattaggatcacacttcttgaacttgcacgctgggtgcaattgtttcagcaacttcttacaaacggtaaccagttctcatggagcttgcaaacgaattggcagcatacctatgtatctttatttggtgttgatggaggcaagagtattgttgatcaggtgggggtccctatttctctaataccaaagtttcaggactttaactcctctcaagctggtttgttatctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="103285" stop="101800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102985" g_stop="102816" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102815" i_stop="102676" i_length="140">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102675" g_stop="102100" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="743" r_length="576" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-E432406" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102985" e_stop="102816"/>
          <exon e_start="102675" e_stop="102100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTATGAAGGATTTGGATTCAACTCTTGCAATGATCAAGAAATTTGAAGAAGGTCACTCAAAAAGGACACATTCCTCGAAGTTTGAGTGGGTAACTGGCATGCTTGTAAAGGCTATAGAAAATGGAGAGTGGATAGTATTGGATAATGCAAATCTCTGTAACCCAACGGTCTGTATGCTCTCTCTTCCATGCATGGTCTTTTAACTTTTCATTTTTTTTTTTTGCAATCTCTATAGTGTGTAAAATGTTAATCTTAAGGTGCTGTGTCTTGTTTACAATGGTTATTTGGTACCTCTTGATTTGTGCAGGTTCTTGACAGGATAAATTCTTTAGTTGAACAATCTGGATCCATCACCATAAATGAATGTGGAACAGTTGAAGGAAAGCCTGTAATTCTTCATCCACACCCTAAGTTTCGGATGTTTTTAACAGTTAACCCTCTAAATGGTGAAGTTTCACGTGCAATGAGAAATAGAGGGGTTGAAATTTTTATGATGGAGCCTGATTGGTTGTTTGATGACAAATGCACTGAAATTGAAATCGAGCTCGAGAATGCAAAGAGATACATCATTCTTTCTGGGGTACCTTCTGGTAAGTTAGTTGATTTGATGGCCAATGCCCACATGACTGCAAAGGTTGAAGGTGCACTGCTCAAAATTAGGATCACACTTCTTGAACTTGCACGCTGGGTGCAGTTGTTTCAGCAACTTCTTACAAACGGTAACCAGCTTTCATGGAGCTTGCAAACGAGTTGGCAGCATACATATGTTTCTTTATTTGGTGTTGATGGAGGCAAGAGTCTTGTTGATCAAGCGGGGTTTCCCATTTCTCTAATACCAAAGTTTCAGGACTTCAACTCCTCTCAAGCTGGCTTGTTATCTTTG</genome_strand>
        <mrna_strand>GGTCTATGAAGGATTTGGATACAACTCTTGCAATGATCAAGAAATTT---GAAGGTCACTCAAAAAGGACACATTCCTCAAAGTTTGAGTGGGTAACTGGCATGCTTGTAAAGGCTATAGAAAATGGAGAGTGGATAGTATTAGATAATGCAAATCTCTGTAACCCAACG............................................................................................................................................GTTCTTGACAGGATAAATTCTTTAGTTGAACAATCTGGATCCATCACCATAAATGAATGTGGAACAATTGAAGGAAAGCCTGTAATTCTTCATCCACACCCTAAGTTTCGGATGTTTCTAACAGTTAACCCTCTAAATGGTGAGGTTTCACGTGCAATGAGAAATAGAGGGGTTGAAATTTTCATGATGGAGCCTGATTGGTTGTTTTATGACAAATGCACTGAAATTGATATCGAGCTTGAGAATGCAAAGAGATACATTGTTCTTTCTGGGGTAGCTGCTGGTAATTTAGTTGATTTGATGGCCAATGCCCACATGAATGCAAAGGTTGAAGGTGCACTGCTGAAAATTAGGATCACACTTCTTGAACTTGCACGCTGGGTGCAATTGTTTCAGCAACTTCTTACAAACGGTAACCAGTTCTCATGGAGCTTGCAAACGAATTGGCAGCATACCTATGTATCTTTATTTGGTGTTGATGGAGGCAAGAGTATTGTTGATCAGGTGGGGGTCCCTATTTCTCTAATACCAAAGTTTCAGGACTTTAACTCCTCTCAAGCTGGTTTGTTATCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>73</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6969" PGL_stop="4498"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6969" e_stop="6937"/>
            <exon e_start="5728" e_stop="5542"/>
            <exon e_start="5450" e_stop="5291"/>
            <exon e_start="5210" e_stop="5173"/>
            <exon e_start="5077" e_stop="5026"/>
            <exon e_start="4904" e_stop="4498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.671" e_score="1.000"/>
          <exon-intron don_prob="0.056" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6969" e_stop="6937" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6936" i_stop="5729" i_length="1208"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5728" e_stop="5542" e_length="187"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.671">
            <gDNA_intron_boundary i_start="5541" i_stop="5451" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5450" e_stop="5291" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.056" acc_prob="0.970">
            <gDNA_intron_boundary i_start="5290" i_stop="5211" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5210" e_stop="5173" e_length="38"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.988">
            <gDNA_intron_boundary i_start="5172" i_stop="5078" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5077" e_stop="5026" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5025" i_stop="4905" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="0.958">
            <gDNA_exon_boundary e_start="4904" e_stop="4498" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6969" stop="6937"/>
              <exon start="5728" stop="5542"/>
              <exon start="5450" stop="5291"/>
              <exon start="5210" stop="5173"/>
              <exon start="5077" stop="5031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6963" stop="6937"/>
              <exon start="5728" stop="5542"/>
              <exon start="5450" stop="5291"/>
              <exon start="5210" stop="5173"/>
              <exon start="5077" stop="5026"/>
              <exon start="4904" stop="4694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6963" stop="6937"/>
              <exon start="5728" stop="5542"/>
              <exon start="5450" stop="5291"/>
              <exon start="5210" stop="5173"/>
              <exon start="5077" stop="5026"/>
              <exon start="4904" stop="4750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5728" stop="5542"/>
              <exon start="5450" stop="5291"/>
              <exon start="5210" stop="5173"/>
              <exon start="5077" stop="5026"/>
              <exon start="4904" stop="4647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5656" stop="5542"/>
              <exon start="5450" stop="5291"/>
              <exon start="5210" stop="5173"/>
              <exon start="5077" stop="5026"/>
              <exon start="4904" stop="4686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5550" stop="5542"/>
              <exon start="5450" stop="5291"/>
              <exon start="5210" stop="5173"/>
              <exon start="5077" stop="5026"/>
              <exon start="4904" stop="4498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4685" stop="4510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4685" stop="4510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4685" stop="4510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTCCCGTCTGTGTATTATAAAATAATGAG : CCGACATCCTACTATCAAGTGGGCTCAGAGGTCTGACAAGTTGTTTATTACGGTGGAGTTACCAGATGCCAAGAATGTGAAGCTGAAACTGGAACCAGAAGGAAAATTCTTATTCTCTGCAACTGCAGGAGCTGATAATGTACCTTATGAAGTGGATCTTGATCTGTTTGATAAAATTAATGTTGAT : GAGAGCAAAAGTAGTACTACCTCTAGAAGTATCGTGTATCTAGTGAAGAAGGCGGAAGACAAGTGGTGGAGCAGACTGGTAAAGCAGGAGGGATTACGTCCGGTGTTTTTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGAAGAAGACAGTAAAC : CTGAGCCAGATATGGATTTTGGTGACATGGACTTCTCG : AAACTCAATATGGGAGAAGGTCCTAGCAATTTTGATGTTGATGTGCCTGAGG : GCGATGATGACAGTGACACTGAAGAAATTGAGGAAGAAGAGAACTCTGAACCCAAGGCAGCAGTGCCTCCAAGCACCGAACCCGGAGTGAAAGCTTGACGCATTCCAGTGTTTGTAACATTGAAAACTTTTTAACTGCTTGCTTGAGTTTGAGTGTGGTACATTCTTCTAGCAATGGTTAGAGCTGTAGTGCAGGAAATGTTTGATGATCAGTTCATGATATATTTGAAGGATCTGAAAGGGCTGGTGTCCTCATTGAACTTTGTTATCATGTACTGCACATTACATATGATTTCTCAAACATATATAAAAACTATGTAATACTGGCTAGTGCAGTGCAACGTTCAGTTTGCACAATAACATGTGGAAATCCATGTTATCCTTATAAGATTGATGTTGTATAATCGT</gDNA_template>
            <first_frame> N  F  P  V  C  V  L  *  N  N  E  :  P  T  S  Y  Y  Q  V  G  S  E  V  *  Q  V  V  Y  Y  G  G  V  T  R  C  Q  E  C  E  A  E  T  G  T  R  R  K  I  L  I  L  C  N  C  R  S  *  *  C  T  L  *  S  G  S  *  S  V  *  *  N  *  C  *   : *  E  Q  K  *  Y  Y  L  *  K  Y  R  V  S  S  E  E  G  G  R  Q  V  V  E  Q  T  G  K  A  G  G  I  T  S  G  V  F  E  S  *  L  G  Q  M  G  *  *  R  *  R  R  Q  *  T :   *  A  R  Y  G  F  W  *  H  G  L  L   : E  T  Q  Y  G  R  R  S  *  Q  F  *  C  *  C  A  *  G :   R  *  *  Q  *  H  *  R  N  *  G  R  R  E  L  *  T  Q  G  S  S  A  S  K  H  R  T  R  S  E  S  L  T  H  S  S  V  C  N  I  E  N  F  L  T  A  C  L  S  L  S  V  V  H  S  S  S  N  G  *  S  C  S  A  G  N  V  *  *  S  V  H  D  I  F  E  G  S  E  R  A  G  V  L  I  E  L  C  Y  H  V  L  H  I  T  Y  D  F  S  N  I  Y  K  N  Y  V  I  L  A  S  A  V  Q  R  S  V  C  T  I  T  C  G  N  P  C  Y  P  Y  K  I  D  V  V  *  S  </first_frame>
            <second_frame>  I  F  P  S  V  Y  Y  K  I  M  S :   R  H  P  T  I  K  W  A  Q  R  S  D  K  L  F  I  T  V  E  L  P  D  A  K  N  V  K  L  K  L  E  P  E  G  K  F  L  F  S  A  T  A  G  A  D  N  V  P  Y  E  V  D  L  D  L  F  D  K  I  N  V  D  :  E  S  K  S  S  T  T  S  R  S  I  V  Y  L  V  K  K  A  E  D  K  W  W  S  R  L  V  K  Q  E  G  L  R  P  V  F  L  K  V  D  W  D  K  W  V  D  E  D  E  E  D  S  K   : P  E  P  D  M  D  F  G  D  M  D  F  S  :  K  L  N  M  G  E  G  P  S  N  F  D  V  D  V  P  E   : G  D  D  D  S  D  T  E  E  I  E  E  E  E  N  S  E  P  K  A  A  V  P  P  S  T  E  P  G  V  K  A  *  R  I  P  V  F  V  T  L  K  T  F  *  L  L  A  *  V  *  V  W  Y  I  L  L  A  M  V  R  A  V  V  Q  E  M  F  D  D  Q  F  M  I  Y  L  K  D  L  K  G  L  V  S  S  L  N  F  V  I  M  Y  C  T  L  H  M  I  S  Q  T  Y  I  K  T  M  *  Y  W  L  V  Q  C  N  V  Q  F  A  Q  *  H  V  E  I  H  V  I  L  I  R  L  M  L  Y  N  R </second_frame>
            <third_frame>   F  S  R  L  C  I  I  K  *  *   : A  D  I  L  L  S  S  G  L  R  G  L  T  S  C  L  L  R  W  S  Y  Q  M  P  R  M  *  S  *  N  W  N  Q  K  E  N  S  Y  S  L  Q  L  Q  E  L  I  M  Y  L  M  K  W  I  L  I  C  L  I  K  L  M  L  M :   R  A  K  V  V  L  P  L  E  V  S  C  I  *  *  R  R  R  K  T  S  G  G  A  D  W  *  S  R  R  D  Y  V  R  C  F  *  K  L  I  G  T  N  G  L  M  K  M  K  K  T  V  N  :  L  S  Q  I  W  I  L  V  T  W  T  S  R :   N  S  I  W  E  K  V  L  A  I  L  M  L  M  C  L  R  :  A  M  M  T  V  T  L  K  K  L  R  K  K  R  T  L  N  P  R  Q  Q  C  L  Q  A  P  N  P  E  *  K  L  D  A  F  Q  C  L  *  H  *  K  L  F  N  C  L  L  E  F  E  C  G  T  F  F  *  Q  W  L  E  L  *  C  R  K  C  L  M  I  S  S  *  Y  I  *  R  I  *  K  G  W  C  P  H  *  T  L  L  S  C  T  A  H  Y  I  *  F  L  K  H  I  *  K  L  C  N  T  G  *  C  S  A  T  F  S  L  H  N  N  M  W  K  S  M  L  S  L  *  D  *  C  C  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6968" stop="6937"/>
                    <exon start="5728" stop="5542"/>
                    <exon start="5450" stop="5291"/>
                    <exon start="5210" stop="5173"/>
                    <exon start="5077" stop="5026"/>
                    <exon start="4904" stop="4807"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFPSVYYKIMSRHPTIKWAQRSDKLFITVELPDAKNVKLKLEPEGKFLFSATAGADNVPYEVDLDLFDKINVDESKSSTTSRSIVYLVKKAEDKWWSRLVKQEGLRPVFLKVDWDKWVDEDEEDSKPEPDMDFGDMDFSKLNMGEGPSNFDVDVPEGDDDSDTEEIEEEENSEPKAAVPPSTEPGVKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4696" stop="4502"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVHDIFEGSERAGVLIELCYHVLHITYDFSNIYKNYVILASAVQRSVCTITCGNPCYPYKIDVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="10060" PGL_stop="10281"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10060" e_stop="10281"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="10060" e_stop="10281" e_length="222"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10060" stop="10281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCGAAACCCCACAACTTCATACCCATGTGATTCGATTTGGGTTTGATGCAGATGTGTTGTTGCGGACTACTTTACTGGATGCGTACTCGAAATCTGGTGATTTGGATTATGCATACAAGGTGTTTGATGAAATGGGTGTTAGAGATATTGCGAGTTGGAATGCATTAATTGCTGGGTTAGCTCAAGGGAATCGACCCACGGAAGCTTTGTTGCTTTTTA</gDNA_template>
            <first_frame> V  P  K  P  H  N  F  I  P  M  *  F  D  L  G  L  M  Q  M  C  C  C  G  L  L  Y  W  M  R  T  R  N  L  V  I  W  I  M  H  T  R  C  L  M  K  W  V  L  E  I  L  R  V  G  M  H  *  L  L  G  *  L  K  G  I  D  P  R  K  L  C  C  F  L </first_frame>
            <second_frame>  F  R  N  P  T  T  S  Y  P  C  D  S  I  W  V  *  C  R  C  V  V  A  D  Y  F  T  G  C  V  L  E  I  W  *  F  G  L  C  I  Q  G  V  *  *  N  G  C  *  R  Y  C  E  L  E  C  I  N  C  W  V  S  S  R  E  S  T  H  G  S  F  V  A  F   </second_frame>
            <third_frame>   S  E  T  P  Q  L  H  T  H  V  I  R  F  G  F  D  A  D  V  L  L  R  T  T  L  L  D  A  Y  S  K  S  G  D  L  D  Y  A  Y  K  V  F  D  E  M  G  V  R  D  I  A  S  W  N  A  L  I  A  G  L  A  Q  G  N  R  P  T  E  A  L  L  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10062" stop="10280"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SETPQLHTHVIRFGFDADVLLRTTLLDAYSKSGDLDYAYKVFDEMGVRDIASWNALIAGLAQGNRPTEALLLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12682" PGL_stop="12018"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12682" e_stop="12018"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="12682" e_stop="12018" e_length="665"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12682" stop="12018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12431" stop="12057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAAAACAGTTGATGATCATTGTGGACTTTGGCTGCCTGGTAATATCTTCCATTTGTTTTTCCATAATAACACTGCTTACCATGACATTCACCATCAGCTTCAAGGCACAAAGTTCAATTATTCTCAGCCATTCTTTTCCATTTGGGACAAACTTCTTGGAACATACAGGCCATACAGACTTGTAAAAAGGCCTGAGGGTGGTTTCGAGGCACAACTGATGAAAGATTAGTTGGTTTTGATCATTAGTCTCTGTATGAAATCAACATGTCTTTTGTAGGGATAGCTACCAAGTTGAGGTTGTTCACTCTAGCAGTTGCCTTGGAAGGTCCACATTCATCAAGACTTGAAAGTGTGCTGCAGAATTAGAAATGTTCATTCTTTTCTTTTCAGTTGACCCTGTTTATTCGTAATTTTTGTCTAACCTCTTGACGATTTGTAAGCCTATTGTTTCTGAGTTCTTACTTTGTGCAGTATACATTTTCAACTATTGCAACTTGCTCAGACTTTAGCAGGTTGATTTTGTATTGCCTTTCAAGAGTTGTGAGTCGAGAGAAATCAAGATCATGTAATTACAATTGTTCAAACTATGTAGTGTAAAATTTCATGGTCATTGAAGTTATTTCAATCACCCTTGTGCTATTTTGTTTGAAGCCTTTGTGATAC</gDNA_template>
            <first_frame> V  K  T  V  D  D  H  C  G  L  W  L  P  G  N  I  F  H  L  F  F  H  N  N  T  A  Y  H  D  I  H  H  Q  L  Q  G  T  K  F  N  Y  S  Q  P  F  F  S  I  W  D  K  L  L  G  T  Y  R  P  Y  R  L  V  K  R  P  E  G  G  F  E  A  Q  L  M  K  D  *  L  V  L  I  I  S  L  C  M  K  S  T  C  L  L  *  G  *  L  P  S  *  G  C  S  L  *  Q  L  P  W  K  V  H  I  H  Q  D  L  K  V  C  C  R  I  R  N  V  H  S  F  L  F  S  *  P  C  L  F  V  I  F  V  *  P  L  D  D  L  *  A  Y  C  F  *  V  L  T  L  C  S  I  H  F  Q  L  L  Q  L  A  Q  T  L  A  G  *  F  C  I  A  F  Q  E  L  *  V  E  R  N  Q  D  H  V  I  T  I  V  Q  T  M  *  C  K  I  S  W  S  L  K  L  F  Q  S  P  L  C  Y  F  V  *  S  L  C  D   </first_frame>
            <second_frame>  S  K  Q  L  M  I  I  V  D  F  G  C  L  V  I  S  S  I  C  F  S  I  I  T  L  L  T  M  T  F  T  I  S  F  K  A  Q  S  S  I  I  L  S  H  S  F  P  F  G  T  N  F  L  E  H  T  G  H  T  D  L  *  K  G  L  R  V  V  S  R  H  N  *  *  K  I  S  W  F  *  S  L  V  S  V  *  N  Q  H  V  F  C  R  D  S  Y  Q  V  E  V  V  H  S  S  S  C  L  G  R  S  T  F  I  K  T  *  K  C  A  A  E  L  E  M  F  I  L  F  F  S  V  D  P  V  Y  S  *  F  L  S  N  L  L  T  I  C  K  P  I  V  S  E  F  L  L  C  A  V  Y  I  F  N  Y  C  N  L  L  R  L  *  Q  V  D  F  V  L  P  F  K  S  C  E  S  R  E  I  K  I  M  *  L  Q  L  F  K  L  C  S  V  K  F  H  G  H  *  S  Y  F  N  H  P  C  A  I  L  F  E  A  F  V  I  </second_frame>
            <third_frame>   Q  N  S  *  *  S  L  W  T  L  A  A  W  *  Y  L  P  F  V  F  P  *  *  H  C  L  P  *  H  S  P  S  A  S  R  H  K  V  Q  L  F  S  A  I  L  F  H  L  G  Q  T  S  W  N  I  Q  A  I  Q  T  C  K  K  A  *  G  W  F  R  G  T  T  D  E  R  L  V  G  F  D  H  *  S  L  Y  E  I  N  M  S  F  V  G  I  A  T  K  L  R  L  F  T  L  A  V  A  L  E  G  P  H  S  S  R  L  E  S  V  L  Q  N  *  K  C  S  F  F  S  F  Q  L  T  L  F  I  R  N  F  C  L  T  S  *  R  F  V  S  L  L  F  L  S  S  Y  F  V  Q  Y  T  F  S  T  I  A  T  C  S  D  F  S  R  L  I  L  Y  C  L  S  R  V  V  S  R  E  K  S  R  S  C  N  Y  N  C  S  N  Y  V  V  *  N  F  M  V  I  E  V  I  S  I  T  L  V  L  F  C  L  K  P  L  *  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12682" stop="12452"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKTVDDHCGLWLPGNIFHLFFHNNTAYHDIHHQLQGTKFNYSQPFFSIWDKLLGTYRPYRLVKRPEGGFEAQLMKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="12220" PGL_stop="12876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12220" e_stop="12876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="12220" e_stop="12876" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12220" stop="12876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGAACTCAGAAACAATAGGCTTACAAATCGTCAAGAGGTTAGACAAAAATTACGAATAAACAGGGTCAACTGAAAAGAAAAGAATGAACATTTCTAATTCTGCAGCACACTTTCAAGTCTTGATGAATGTGGACCTTCCAAGGCAACTGCTAGAGTGAACAACCTCAACTTGGTAGCTATCCCTACAAAAGACATGTTGATTTCATACAGAGACTAATGATCAAAACCAACTAATCTTTCATCAGTTGTGCCTCGAAACCACCCTCAGGCCTTTTTACAAGTCTGTATGGCCTGTATGTTCCAAGAAGTTTGTCCCAAATGGAAAAGAATGGCTGAGAATAATTGAACTTTGTGCCTTGAAGCTGATGGTGAATGTCATGGTAAGCAGTGTTATTATGGAAAAACAAATGGAAGATATTACCAGGCAGCCAAAGTCCACAATGATCATCAACTGTTTTGACCACAGCAAAACAGAAAAAGATTACAGCAGTACGTGCAGTCATTCCAGCAACAAGAAACGAAAGAGCACCACCGAAAGTATCCAGGAGGAGACCTTCAAGTGGGTGGTTATAAAGGGCACCAATTGCGTAAGGCACGACCAACCGATGATGCTGGGAGTGAATATGGCGGTATAAGAACTTGTTCTGATGCATGT</gDNA_template>
            <first_frame> *  E  L  R  N  N  R  L  T  N  R  Q  E  V  R  Q  K  L  R  I  N  R  V  N  *  K  E  K  N  E  H  F  *  F  C  S  T  L  S  S  L  D  E  C  G  P  S  K  A  T  A  R  V  N  N  L  N  L  V  A  I  P  T  K  D  M  L  I  S  Y  R  D  *  *  S  K  P  T  N  L  S  S  V  V  P  R  N  H  P  Q  A  F  L  Q  V  C  M  A  C  M  F  Q  E  V  C  P  K  W  K  R  M  A  E  N  N  *  T  L  C  L  E  A  D  G  E  C  H  G  K  Q  C  Y  Y  G  K  T  N  G  R  Y  Y  Q  A  A  K  V  H  N  D  H  Q  L  F  *  P  Q  Q  N  R  K  R  L  Q  Q  Y  V  Q  S  F  Q  Q  Q  E  T  K  E  H  H  R  K  Y  P  G  G  D  L  Q  V  G  G  Y  K  G  H  Q  L  R  K  A  R  P  T  D  D  A  G  S  E  Y  G  G  I  R  T  C  S  D  A  C </first_frame>
            <second_frame>  K  N  S  E  T  I  G  L  Q  I  V  K  R  L  D  K  N  Y  E  *  T  G  S  T  E  K  K  R  M  N  I  S  N  S  A  A  H  F  Q  V  L  M  N  V  D  L  P  R  Q  L  L  E  *  T  T  S  T  W  *  L  S  L  Q  K  T  C  *  F  H  T  E  T  N  D  Q  N  Q  L  I  F  H  Q  L  C  L  E  T  T  L  R  P  F  Y  K  S  V  W  P  V  C  S  K  K  F  V  P  N  G  K  E  W  L  R  I  I  E  L  C  A  L  K  L  M  V  N  V  M  V  S  S  V  I  M  E  K  Q  M  E  D  I  T  R  Q  P  K  S  T  M  I  I  N  C  F  D  H  S  K  T  E  K  D  Y  S  S  T  C  S  H  S  S  N  K  K  R  K  S  T  T  E  S  I  Q  E  E  T  F  K  W  V  V  I  K  G  T  N  C  V  R  H  D  Q  P  M  M  L  G  V  N  M  A  V  *  E  L  V  L  M  H   </second_frame>
            <third_frame>   R  T  Q  K  Q  *  A  Y  K  S  S  R  G  *  T  K  I  T  N  K  Q  G  Q  L  K  R  K  E  *  T  F  L  I  L  Q  H  T  F  K  S  *  *  M  W  T  F  Q  G  N  C  *  S  E  Q  P  Q  L  G  S  Y  P  Y  K  R  H  V  D  F  I  Q  R  L  M  I  K  T  N  *  S  F  I  S  C  A  S  K  P  P  S  G  L  F  T  S  L  Y  G  L  Y  V  P  R  S  L  S  Q  M  E  K  N  G  *  E  *  L  N  F  V  P  *  S  *  W  *  M  S  W  *  A  V  L  L  W  K  N  K  W  K  I  L  P  G  S  Q  S  P  Q  *  S  S  T  V  L  T  T  A  K  Q  K  K  I  T  A  V  R  A  V  I  P  A  T  R  N  E  R  A  P  P  K  V  S  R  R  R  P  S  S  G  W  L  *  R  A  P  I  A  *  G  T  T  N  R  *  C  W  E  *  I  W  R  Y  K  N  L  F  *  C  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12422" stop="12856"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHTETNDQNQLIFHQLCLETTLRPFYKSVWPVCSKKFVPNGKEWLRIIELCALKLMVNVMVSSVIMEKQMEDITRQPKSTMIINCFDHSKTEKDYSSTCSHSSNKKRKSTTESIQEETFKWVVIKGTNCVRHDQPMMLGVNMAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="19218" PGL_stop="12870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19218" e_stop="18562"/>
            <exon e_start="12994" e_stop="12870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.911" acc_prob="0.977" e_score="0.953"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="19218" e_stop="18562" e_length="657"/>
          </exon>
          <intron i_serial="1" don_prob="0.911" acc_prob="0.977">
            <gDNA_intron_boundary i_start="18561" i_stop="12995" i_length="5567"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="12994" e_stop="12870" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19218" stop="18562"/>
              <exon start="12994" stop="12870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19217" stop="18562"/>
              <exon start="12994" stop="12870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19217" stop="18562"/>
              <exon start="12994" stop="12945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19217" stop="18746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19158" stop="18562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCCCTTTTCCTTTTCCAACGAATCTCTCAGAATCACAAATTCAAAAAAAAAAAAAAAAGTTAGGCCGAATCTCACAACTGTCAGCACTATCATTGTATTAACCCCAGCTCAACTCTCATGTTAATACATACATTTACATACATATGCCCCAGATCTGTTCTCATATTTCCAATAATTGTTTCTCTAAGATTTGCCAAAATCACCACCAGTAATTTCAATGCTTTGTTGGGGCTAAAGATTTGATCTTTTGTTCAAGAACTTATTTGGGTTTTCATTTTCTTGGATTCTTGTTTCAATGTTGTAATGTGCTTGTTGTATGTAGATCTTGAGCTGGGAATTTCATAATTTAGAGTGTTGGATTGAGGGAAAAGGGATAAGGGAAAGGGGGTAACTTTTTTTTTTTTTTTGAAAAGGGGGCTTAAAAATGGTGTTTTGGGAGGGTTATGTGAGTGATGAAGTGATGGGGACATTTGCCCCAATAGTGGTGTATTGGTTGTATGCAGGGTTCTATCAGCTATTGCCTCCCATGGATAAATATCGTCTTCATACTAGGAAAGAGGAAAATGCCAAGAACTTAGTTCCACTGGCTTCTGTTGTTAAAGGGGTTCTTCTTCAGCAGTTTTTTCAGGCAACTGTTGCCCACTTGCTCTTTTTG : TTAACTTGTAAGGTAACTACATCAGGAACTGTAGTCCAGCCCTCAATTCCTGTTCAGATTGTGCAGATCATTATTGCGATGCTGGTCATGGACACATGGCAGTACTTTGTGCATCGCTACATGCA</gDNA_template>
            <first_frame> H  P  F  S  F  S  N  E  S  L  R  I  T  N  S  K  K  K  K  K  V  R  P  N  L  T  T  V  S  T  I  I  V  L  T  P  A  Q  L  S  C  *  Y  I  H  L  H  T  Y  A  P  D  L  F  S  Y  F  Q  *  L  F  L  *  D  L  P  K  S  P  P  V  I  S  M  L  C  W  G  *  R  F  D  L  L  F  K  N  L  F  G  F  S  F  S  W  I  L  V  S  M  L  *  C  A  C  C  M  *  I  L  S  W  E  F  H  N  L  E  C  W  I  E  G  K  G  I  R  E  R  G  *  L  F  F  F  F  *  K  G  G  L  K  M  V  F  W  E  G  Y  V  S  D  E  V  M  G  T  F  A  P  I  V  V  Y  W  L  Y  A  G  F  Y  Q  L  L  P  P  M  D  K  Y  R  L  H  T  R  K  E  E  N  A  K  N  L  V  P  L  A  S  V  V  K  G  V  L  L  Q  Q  F  F  Q  A  T  V  A  H  L  L  F  L  :  L  T  C  K  V  T  T  S  G  T  V  V  Q  P  S  I  P  V  Q  I  V  Q  I  I  I  A  M  L  V  M  D  T  W  Q  Y  F  V  H  R  Y  M   </first_frame>
            <second_frame>  I  P  F  P  F  P  T  N  L  S  E  S  Q  I  Q  K  K  K  K  K  L  G  R  I  S  Q  L  S  A  L  S  L  Y  *  P  Q  L  N  S  H  V  N  T  Y  I  Y  I  H  M  P  Q  I  C  S  H  I  S  N  N  C  F  S  K  I  C  Q  N  H  H  Q  *  F  Q  C  F  V  G  A  K  D  L  I  F  C  S  R  T  Y  L  G  F  H  F  L  G  F  L  F  Q  C  C  N  V  L  V  V  C  R  S  *  A  G  N  F  I  I  *  S  V  G  L  R  E  K  G  *  G  K  G  G  N  F  F  F  F  F  E  K  G  A  *  K  W  C  F  G  R  V  M  *  V  M  K  *  W  G  H  L  P  Q  *  W  C  I  G  C  M  Q  G  S  I  S  Y  C  L  P  W  I  N  I  V  F  I  L  G  K  R  K  M  P  R  T  *  F  H  W  L  L  L  L  K  G  F  F  F  S  S  F  F  R  Q  L  L  P  T  C  S  F  C :   *  L  V  R  *  L  H  Q  E  L  *  S  S  P  Q  F  L  F  R  L  C  R  S  L  L  R  C  W  S  W  T  H  G  S  T  L  C  I  A  T  C  </second_frame>
            <third_frame>   S  L  F  L  F  Q  R  I  S  Q  N  H  K  F  K  K  K  K  K  S  *  A  E  S  H  N  C  Q  H  Y  H  C  I  N  P  S  S  T  L  M  L  I  H  T  F  T  Y  I  C  P  R  S  V  L  I  F  P  I  I  V  S  L  R  F  A  K  I  T  T  S  N  F  N  A  L  L  G  L  K  I  *  S  F  V  Q  E  L  I  W  V  F  I  F  L  D  S  C  F  N  V  V  M  C  L  L  Y  V  D  L  E  L  G  I  S  *  F  R  V  L  D  *  G  K  R  D  K  G  K  G  V  T  F  F  F  F  L  K  R  G  L  K  N  G  V  L  G  G  L  C  E  *  *  S  D  G  D  I  C  P  N  S  G  V  L  V  V  C  R  V  L  S  A  I  A  S  H  G  *  I  S  S  S  Y  *  E  R  G  K  C  Q  E  L  S  S  T  G  F  C  C  *  R  G  S  S  S  A  V  F  S  G  N  C  C  P  L  A  L  F   : V  N  L  *  G  N  Y  I  R  N  C  S  P  A  L  N  S  C  S  D  C  A  D  H  Y  C  D  A  G  H  G  H  M  A  V  L  C  A  S  L  H  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18807" stop="18562"/>
                    <exon start="12994" stop="12872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGGLKMVFWEGYVSDEVMGTFAPIVVYWLYAGFYQLLPPMDKYRLHTRKEENAKNLVPLASVVKGVLLQQFFQATVAHLLFLLTCKVTTSGTVVQPSIPVQIVQIIIAMLVMDTWQYFVHRYM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="24429" PGL_stop="25143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24429" e_stop="25143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="24429" e_stop="25143" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24429" stop="25143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAACAACATAGAGTTGTTAATCATGTTGATGACAGCAACAGCACCTTGTTAGAACGCAGTGGAACTGCCAGCCAAATTTATGGTTATTCTCTGGCCCCGTCGGTATTGCATCAAACTGTTGCAGGCTCAATACATCAAAATGCTGTTGGCTCACTGGCAGGACCTGTGGGAGGTGTTGTGGCCATGGATGGAGCTGGAGCAGGTAATTTAGTGAAAGGAGGTTCATGTGTTGGAGTTCATGGAGGGACTCTAGTTGATCATACACCTAGTCAAATAGGAAGTCATACTGGTCAGTTATATGGACCCCCTGGTGATGCACACACCTATGCTTATAGGTCGCCATCCTACTTTGAAGCATCGGGCTCTATGGGGTTGCCAAACACCATGCCTGGTGATGCTTATAGGCCTCCACCATATTTGGAAGGCTCTATGGGGTTGCCAAACAACATACCGGGTGATGCTTATAGGCCAAACCAATACATGAAATGCTCCAACGGCTTGCAAAAAAACATATCTGGTGATGCTAATCAGCCTCCACCATACATGGAAGGCTCTGCACGGTTGCCAAACACCATACCTGCACCATATCAGTTTGCTGATTCTGTTCCATCTGCTGCCCTTGCTCATCCTTCACCCTCCTTGTACTGGAAGAGATAGTTTTGCATTGGGCAGGCATTATTTCTAACGTAGTTTCCCTTTTGTAGTATACCCAA</gDNA_template>
            <first_frame> H  N  N  I  E  L  L  I  M  L  M  T  A  T  A  P  C  *  N  A  V  E  L  P  A  K  F  M  V  I  L  W  P  R  R  Y  C  I  K  L  L  Q  A  Q  Y  I  K  M  L  L  A  H  W  Q  D  L  W  E  V  L  W  P  W  M  E  L  E  Q  V  I  *  *  K  E  V  H  V  L  E  F  M  E  G  L  *  L  I  I  H  L  V  K  *  E  V  I  L  V  S  Y  M  D  P  L  V  M  H  T  P  M  L  I  G  R  H  P  T  L  K  H  R  A  L  W  G  C  Q  T  P  C  L  V  M  L  I  G  L  H  H  I  W  K  A  L  W  G  C  Q  T  T  Y  R  V  M  L  I  G  Q  T  N  T  *  N  A  P  T  A  C  K  K  T  Y  L  V  M  L  I  S  L  H  H  T  W  K  A  L  H  G  C  Q  T  P  Y  L  H  H  I  S  L  L  I  L  F  H  L  L  P  L  L  I  L  H  P  P  C  T  G  R  D  S  F  A  L  G  R  H  Y  F  *  R  S  F  P  F  V  V  Y  P  </first_frame>
            <second_frame>  T  T  T  *  S  C  *  S  C  *  *  Q  Q  Q  H  L  V  R  T  Q  W  N  C  Q  P  N  L  W  L  F  S  G  P  V  G  I  A  S  N  C  C  R  L  N  T  S  K  C  C  W  L  T  G  R  T  C  G  R  C  C  G  H  G  W  S  W  S  R  *  F  S  E  R  R  F  M  C  W  S  S  W  R  D  S  S  *  S  Y  T  *  S  N  R  K  S  Y  W  S  V  I  W  T  P  W  *  C  T  H  L  C  L  *  V  A  I  L  L  *  S  I  G  L  Y  G  V  A  K  H  H  A  W  *  C  L  *  A  S  T  I  F  G  R  L  Y  G  V  A  K  Q  H  T  G  *  C  L  *  A  K  P  I  H  E  M  L  Q  R  L  A  K  K  H  I  W  *  C  *  S  A  S  T  I  H  G  R  L  C  T  V  A  K  H  H  T  C  T  I  S  V  C  *  F  C  S  I  C  C  P  C  S  S  F  T  L  L  V  L  E  E  I  V  L  H  W  A  G  I  I  S  N  V  V  S  L  L  *  Y  T  Q </second_frame>
            <third_frame>   Q  Q  H  R  V  V  N  H  V  D  D  S  N  S  T  L  L  E  R  S  G  T  A  S  Q  I  Y  G  Y  S  L  A  P  S  V  L  H  Q  T  V  A  G  S  I  H  Q  N  A  V  G  S  L  A  G  P  V  G  G  V  V  A  M  D  G  A  G  A  G  N  L  V  K  G  G  S  C  V  G  V  H  G  G  T  L  V  D  H  T  P  S  Q  I  G  S  H  T  G  Q  L  Y  G  P  P  G  D  A  H  T  Y  A  Y  R  S  P  S  Y  F  E  A  S  G  S  M  G  L  P  N  T  M  P  G  D  A  Y  R  P  P  P  Y  L  E  G  S  M  G  L  P  N  N  I  P  G  D  A  Y  R  P  N  Q  Y  M  K  C  S  N  G  L  Q  K  N  I  S  G  D  A  N  Q  P  P  P  Y  M  E  G  S  A  R  L  P  N  T  I  P  A  P  Y  Q  F  A  D  S  V  P  S  A  A  L  A  H  P  S  P  S  L  Y  W  K  R  *  F  C  I  G  Q  A  L  F  L  T  *  F  P  F  C  S  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24431" stop="25087"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQHRVVNHVDDSNSTLLERSGTASQIYGYSLAPSVLHQTVAGSIHQNAVGSLAGPVGGVVAMDGAGAGNLVKGGSCVGVHGGTLVDHTPSQIGSHTGQLYGPPGDAHTYAYRSPSYFEASGSMGLPNTMPGDAYRPPPYLEGSMGLPNNIPGDAYRPNQYMKCSNGLQKNISGDANQPPPYMEGSARLPNTIPAPYQFADSVPSAALAHPSPSLYWKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="30879" PGL_stop="26469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30879" e_stop="30590"/>
            <exon e_start="28936" e_stop="28791"/>
            <exon e_start="28702" e_stop="28603"/>
            <exon e_start="27434" e_stop="27361"/>
            <exon e_start="27247" e_stop="26939"/>
            <exon e_start="26512" e_stop="26469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.944" e_score="0.993"/>
          <exon-intron don_prob="0.356" acc_prob="0.992" e_score="0.966"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.972"/>
          <exon-intron don_prob="0.900" acc_prob="0.145" e_score="0.959"/>
          <exon-intron don_prob="0.000" acc_prob="0.753" e_score="0.880"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="30879" e_stop="30590" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.944">
            <gDNA_intron_boundary i_start="30589" i_stop="28937" i_length="1653"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="28936" e_stop="28791" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.356" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28790" i_stop="28703" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="28702" e_stop="28603" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="28602" i_stop="27435" i_length="1168"/>
          </intron>
          <exon e_serial="4" e_score="0.959">
            <gDNA_exon_boundary e_start="27434" e_stop="27361" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.145">
            <gDNA_intron_boundary i_start="27360" i_stop="27248" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="0.880">
            <gDNA_exon_boundary e_start="27247" e_stop="26939" e_length="309"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.753">
            <gDNA_intron_boundary i_start="26938" i_stop="26513" i_length="426"/>
          </intron>
          <exon e_serial="6" e_score="0.545">
            <gDNA_exon_boundary e_start="26512" e_stop="26469" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30879" stop="30590"/>
              <exon start="28936" stop="28791"/>
              <exon start="28702" stop="28675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30876" stop="30590"/>
              <exon start="28936" stop="28858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280075" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30787" stop="30590"/>
              <exon start="28936" stop="28791"/>
              <exon start="28702" stop="28632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28936" stop="28791"/>
              <exon start="28702" stop="28603"/>
              <exon start="27434" stop="27361"/>
              <exon start="27247" stop="26939"/>
              <exon start="26512" stop="26469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419983" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGGAGGGAGGAGTTCTATTTTTCTGTGAACTCCGCTAATCATTCTTCTTTTCAAATTACTACATTCGGAGGGAGAAAAAAGCCCTAAACTTTGGTCTGGAGAGGTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGCTGATCTCCTTCAGTAAGGATCTTGTTCAGTTTTTGAAAGAAGATAAAGATGTCAGCTTCTTGAATCAGTGTAAAGAGCAATTTAATGCCCTTCAATCACACTGCCAATCTGAGTACCAGGCTCTTCAGAATTCCATTCAAG : ATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGAGGCTGAAATAGATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTTAGAGAAGAACTTAGATAA : TTATAACCGATGAGATCAATGATTTAGATCGCCAAAGAGACTCTATTGAGGAGCACAGGAAATTGCTCAAGAAAATTGAGCAAGATCATCTTCGAGCTGA : GATGAAGCTATCACTGTATGCTTCTGTCACAAGTATCATCCCGGACTTGGATGATCAATCCAAAATATCAGGCC : ATATTGTGGAGAGAGATAAGAAGGTGGTTGAAAATTTCGAGTTTGATTCATCAAATCAAACTGCCTTTGACACTTGTAACAACATCTGGAAGATGATTAATTTGTAAGAAGCAGCATTGCTCAGGCTTAGTTATGACTTGCATTGTTAAGAGTACCTTATTGCCTTTGCTGATCAGATTTTTAATCTAATCATACTAGATATCATTGCCATTTTGCATTATAGTGTGTTTCATTTGAAGTATAATCTTGTATTTTGTACATGATATTTGTTGTTTCAGAATCCAAATCATTTCTAATGCTTTCACAAGT : CCAAAAGTCACAAATGCTGTGTAAAAAACAGTGGAAACAGATGC</gDNA_template>
            <first_frame> T  G  G  R  S  S  I  F  L  *  T  P  L  I  I  L  L  F  K  L  L  H  S  E  G  E  K  S  P  K  L  W  S  G  E  V  E  N  G  G  W  V  E  *  R  G  C  R  E  A  D  L  L  Q  *  G  S  C  S  V  F  E  R  R  *  R  C  Q  L  L  E  S  V  *  R  A  I  *  C  P  S  I  T  L  P  I  *  V  P  G  S  S  E  F  H  S  R :   L  S  R  K  D  K  C  M  *  A  E  N  N  R  S  T  I  *  S  C  C  R  G  *  N  R  *  A  A  E  R  V  R  T  G  D  P  E  R  T  T  A  *  R  R  T  *  I   : I  I  T  D  E  I  N  D  L  D  R  Q  R  D  S  I  E  E  H  R  K  L  L  K  K  I  E  Q  D  H  L  R  A  E :   M  K  L  S  L  Y  A  S  V  T  S  I  I  P  D  L  D  D  Q  S  K  I  S  G   : H  I  V  E  R  D  K  K  V  V  E  N  F  E  F  D  S  S  N  Q  T  A  F  D  T  C  N  N  I  W  K  M  I  N  L  *  E  A  A  L  L  R  L  S  Y  D  L  H  C  *  E  Y  L  I  A  F  A  D  Q  I  F  N  L  I  I  L  D  I  I  A  I  L  H  Y  S  V  F  H  L  K  Y  N  L  V  F  C  T  *  Y  L  L  F  Q  N  P  N  H  F  *  C  F  H  K   : S  K  S  H  K  C  C  V  K  N  S  G  N  R  C </first_frame>
            <second_frame>  R  E  G  G  V  L  F  F  C  E  L  R  *  S  F  F  F  S  N  Y  Y  I  R  R  E  K  K  A  L  N  F  G  L  E  R  S  K  M  V  D  G  S  N  N  V  D  V  E  K  L  I  S  F  S  K  D  L  V  Q  F  L  K  E  D  K  D  V  S  F  L  N  Q  C  K  E  Q  F  N  A  L  Q  S  H  C  Q  S  E  Y  Q  A  L  Q  N  S  I  Q   : D  Y  Q  G  K  I  N  A  C  K  Q  R  T  T  E  A  Q  S  E  A  A  A  E  A  E  I  D  K  L  Q  K  E  L  E  Q  E  I  Q  R  E  Q  L  L  R  E  E  L  R  *  :  L  *  P  M  R  S  M  I  *  I  A  K  E  T  L  L  R  S  T  G  N  C  S  R  K  L  S  K  I  I  F  E  L   : R  *  S  Y  H  C  M  L  L  S  Q  V  S  S  R  T  W  M  I  N  P  K  Y  Q  A  :  I  L  W  R  E  I  R  R  W  L  K  I  S  S  L  I  H  Q  I  K  L  P  L  T  L  V  T  T  S  G  R  *  L  I  C  K  K  Q  H  C  S  G  L  V  M  T  C  I  V  K  S  T  L  L  P  L  L  I  R  F  L  I  *  S  Y  *  I  S  L  P  F  C  I  I  V  C  F  I  *  S  I  I  L  Y  F  V  H  D  I  C  C  F  R  I  Q  I  I  S  N  A  F  T  S  :  P  K  V  T  N  A  V  *  K  T  V  E  T  D   </second_frame>
            <third_frame>   G  R  E  E  F  Y  F  S  V  N  S  A  N  H  S  S  F  Q  I  T  T  F  G  G  R  K  K  P  *  T  L  V  W  R  G  R  K  W  W  M  G  R  I  T  W  M  *  R  S  *  S  P  S  V  R  I  L  F  S  F  *  K  K  I  K  M  S  A  S  *  I  S  V  K  S  N  L  M  P  F  N  H  T  A  N  L  S  T  R  L  F  R  I  P  F  K  :  I  I  K  E  R  *  M  H  V  S  R  E  Q  Q  K  H  N  L  K  L  L  Q  R  L  K  *  I  S  C  R  K  S  *  N  R  R  S  R  E  N  N  C  L  E  K  N  L  D  N :   Y  N  R  *  D  Q  *  F  R  S  P  K  R  L  Y  *  G  A  Q  E  I  A  Q  E  N  *  A  R  S  S  S  S  *  :  D  E  A  I  T  V  C  F  C  H  K  Y  H  P  G  L  G  *  S  I  Q  N  I  R  P :   Y  C  G  E  R  *  E  G  G  *  K  F  R  V  *  F  I  K  S  N  C  L  *  H  L  *  Q  H  L  E  D  D  *  F  V  R  S  S  I  A  Q  A  *  L  *  L  A  L  L  R  V  P  Y  C  L  C  *  S  D  F  *  S  N  H  T  R  Y  H  C  H  F  A  L  *  C  V  S  F  E  V  *  S  C  I  L  Y  M  I  F  V  V  S  E  S  K  S  F  L  M  L  S  Q  V :   Q  K  S  Q  M  L  C  K  K  Q  W  K  Q  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30839" stop="30590"/>
                    <exon start="28936" stop="28791"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFFSNYYIRREKKALNFGLERSKMVDGSNNVDVEKLISFSKDLVQFLKEDKDVSFLNQCKEQFNALQSHCQSEYQALQNSIQDYQGKINACKQRTTEAQSEAAAEAEIDKLQKELEQEIQREQLLREELR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28794" stop="28791"/>
                    <exon start="28702" stop="28603"/>
                    <exon start="27434" stop="27361"/>
                    <exon start="27247" stop="27141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIITDEINDLDRQRDSIEEHRKLLKKIEQDHLRAEMKLSLYASVTSIIPDLDDQSKISGHIVERDKKVVENFEFDSSNQTAFDTCNNIWKMINL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="42106" PGL_stop="43753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42106" e_stop="42991"/>
            <exon e_start="43280" e_stop="43753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.850" acc_prob="0.989" e_score="0.987"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="42106" e_stop="42991" e_length="886"/>
          </exon>
          <intron i_serial="1" don_prob="0.850" acc_prob="0.989">
            <gDNA_intron_boundary i_start="42992" i_stop="43279" i_length="288"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="43280" e_stop="43753" e_length="474"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42106" stop="42864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42323" stop="42940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42323" stop="42845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42415" stop="42991"/>
              <exon start="43280" stop="43401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42781" stop="42991"/>
              <exon start="43280" stop="43753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42973" stop="42991"/>
              <exon start="43280" stop="43723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43312" stop="43744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGGGCCTGGCCCCAAGAATGGTGAGCAATATGGTGCACCTTTTAGAGAAGAGGACTGGCTTGATGATGAGCGCCTAAATGCCAAAGTCTCTGTACAGCCGGAGAGCCCGAGAGATCAGGAGAATACTGCAAAGAACATTAATGTAGTTCCTGATCCTGATGATGCAATTGAGGAATTGCTGAAGCGTCCTTTTACTGTAGATAACAATTTTGCATTGGAGCAGTTTGTTCAAGAGGAAGATACTGAAAGCACCTTGCTAAATCAGTCTTCGAGGGATGTGAATTTATACAATCATTGTGCTGTCGCTGGGCCAAGCTGCCAGCAGTATAATGCGAGGGCGAGCTTTGATCTGACAGAGTCAGGCACATCACCATTACATTTGCATGAGGCACCAGAAGTCTCATCTGCTCCGGTGAATCCTGAAAAGCCCCCATACGCGGTGGAAGAGGATTTCTTGGAAGATTTTTTGGAGATGGATGACCTCCTTGTTGTCGATCCAAATGTTCAAAACTTTGATCACGGAACCCCAAATGGTCAAGTCTTTGACAAACCTGCTGGAAACCTGGAGACTCTGCAGTTTGATGACTTTGATGGCTTATCAGAGTTTGACCTGTATCATGATGCACCTTCACTTCTTGATAATGTGGGGACACCAGTAGTGGGGCAAATTGCTGAACCATACATGAACAACTTTGTGAACGGAATTACATATCCTGACTCAACTACATACATGAGCGCTTTCCAAAATGACATGATGAACAACCAGCAGATGCGCTTGAATCATGAAAATCAGATAAACAATCAATTTTGGATGCATGATGAAAGATTCGGCGTCTTCAACCCCATTGAAGGAGATCAATCAGTTGTTGATCAATCATCTTCAG : GTGTGGTAAATGATAATAATATGGCAAATTATCCTATGGGCGCTAATCAAAATCTAGCCAAAAAGGATGATGGTACGCAGTCGTGGTTCTCCTCTAATTTGTGGGCTTTCGTGGATTCTATACCCACAACTCCTGCTTCAGCTGCTGAAAGTGCTCTTGTAGTTAACAGGGCCTTTGAGCGTATGTCTAGCTTTAGTAGAATGAAATTAAATGTCGGGAACATGAATGTTGCTGCAGGTAATGCCTCTGCAACTTCAAGTAGTTCTGGCAAAGGCAAATATGGATTATGTTGTATTTCTTTACTTGGAGTACTTTGTGCATTCTTGTGGGTGGTAATAGGAACTTCTGCTAAAATCGCGGGGACATAGATGATATTCTCATAAACATGTGCAGAGTTTTCTTTTGCTATTTATCATCTGGCTTTTTGCCAGAATCAATGGAAAGGTGAGCATATATCTTACAAATAATTGGAGA</gDNA_template>
            <first_frame> S  G  P  G  P  K  N  G  E  Q  Y  G  A  P  F  R  E  E  D  W  L  D  D  E  R  L  N  A  K  V  S  V  Q  P  E  S  P  R  D  Q  E  N  T  A  K  N  I  N  V  V  P  D  P  D  D  A  I  E  E  L  L  K  R  P  F  T  V  D  N  N  F  A  L  E  Q  F  V  Q  E  E  D  T  E  S  T  L  L  N  Q  S  S  R  D  V  N  L  Y  N  H  C  A  V  A  G  P  S  C  Q  Q  Y  N  A  R  A  S  F  D  L  T  E  S  G  T  S  P  L  H  L  H  E  A  P  E  V  S  S  A  P  V  N  P  E  K  P  P  Y  A  V  E  E  D  F  L  E  D  F  L  E  M  D  D  L  L  V  V  D  P  N  V  Q  N  F  D  H  G  T  P  N  G  Q  V  F  D  K  P  A  G  N  L  E  T  L  Q  F  D  D  F  D  G  L  S  E  F  D  L  Y  H  D  A  P  S  L  L  D  N  V  G  T  P  V  V  G  Q  I  A  E  P  Y  M  N  N  F  V  N  G  I  T  Y  P  D  S  T  T  Y  M  S  A  F  Q  N  D  M  M  N  N  Q  Q  M  R  L  N  H  E  N  Q  I  N  N  Q  F  W  M  H  D  E  R  F  G  V  F  N  P  I  E  G  D  Q  S  V  V  D  Q  S  S  S   : G  V  V  N  D  N  N  M  A  N  Y  P  M  G  A  N  Q  N  L  A  K  K  D  D  G  T  Q  S  W  F  S  S  N  L  W  A  F  V  D  S  I  P  T  T  P  A  S  A  A  E  S  A  L  V  V  N  R  A  F  E  R  M  S  S  F  S  R  M  K  L  N  V  G  N  M  N  V  A  A  G  N  A  S  A  T  S  S  S  S  G  K  G  K  Y  G  L  C  C  I  S  L  L  G  V  L  C  A  F  L  W  V  V  I  G  T  S  A  K  I  A  G  T  *  M  I  F  S  *  T  C  A  E  F  S  F  A  I  Y  H  L  A  F  C  Q  N  Q  W  K  G  E  H  I  S  Y  K  *  L  E  </first_frame>
            <second_frame>  V  G  L  A  P  R  M  V  S  N  M  V  H  L  L  E  K  R  T  G  L  M  M  S  A  *  M  P  K  S  L  Y  S  R  R  A  R  E  I  R  R  I  L  Q  R  T  L  M  *  F  L  I  L  M  M  Q  L  R  N  C  *  S  V  L  L  L  *  I  T  I  L  H  W  S  S  L  F  K  R  K  I  L  K  A  P  C  *  I  S  L  R  G  M  *  I  Y  T  I  I  V  L  S  L  G  Q  A  A  S  S  I  M  R  G  R  A  L  I  *  Q  S  Q  A  H  H  H  Y  I  C  M  R  H  Q  K  S  H  L  L  R  *  I  L  K  S  P  H  T  R  W  K  R  I  S  W  K  I  F  W  R  W  M  T  S  L  L  S  I  Q  M  F  K  T  L  I  T  E  P  Q  M  V  K  S  L  T  N  L  L  E  T  W  R  L  C  S  L  M  T  L  M  A  Y  Q  S  L  T  C  I  M  M  H  L  H  F  L  I  M  W  G  H  Q  *  W  G  K  L  L  N  H  T  *  T  T  L  *  T  E  L  H  I  L  T  Q  L  H  T  *  A  L  S  K  M  T  *  *  T  T  S  R  C  A  *  I  M  K  I  R  *  T  I  N  F  G  C  M  M  K  D  S  A  S  S  T  P  L  K  E  I  N  Q  L  L  I  N  H  L  Q  :  V  W  *  M  I  I  I  W  Q  I  I  L  W  A  L  I  K  I  *  P  K  R  M  M  V  R  S  R  G  S  P  L  I  C  G  L  S  W  I  L  Y  P  Q  L  L  L  Q  L  L  K  V  L  L  *  L  T  G  P  L  S  V  C  L  A  L  V  E  *  N  *  M  S  G  T  *  M  L  L  Q  V  M  P  L  Q  L  Q  V  V  L  A  K  A  N  M  D  Y  V  V  F  L  Y  L  E  Y  F  V  H  S  C  G  W  *  *  E  L  L  L  K  S  R  G  H  R  *  Y  S  H  K  H  V  Q  S  F  L  L  L  F  I  I  W  L  F  A  R  I  N  G  K  V  S  I  Y  L  T  N  N  W  R </second_frame>
            <third_frame>   W  A  W  P  Q  E  W  *  A  I  W  C  T  F  *  R  R  G  L  A  *  *  *  A  P  K  C  Q  S  L  C  T  A  G  E  P  E  R  S  G  E  Y  C  K  E  H  *  C  S  S  *  S  *  *  C  N  *  G  I  A  E  A  S  F  Y  C  R  *  Q  F  C  I  G  A  V  C  S  R  G  R  Y  *  K  H  L  A  K  S  V  F  E  G  C  E  F  I  Q  S  L  C  C  R  W  A  K  L  P  A  V  *  C  E  G  E  L  *  S  D  R  V  R  H  I  T  I  T  F  A  *  G  T  R  S  L  I  C  S  G  E  S  *  K  A  P  I  R  G  G  R  G  F  L  G  R  F  F  G  D  G  *  P  P  C  C  R  S  K  C  S  K  L  *  S  R  N  P  K  W  S  S  L  *  Q  T  C  W  K  P  G  D  S  A  V  *  *  L  *  W  L  I  R  V  *  P  V  S  *  C  T  F  T  S  *  *  C  G  D  T  S  S  G  A  N  C  *  T  I  H  E  Q  L  C  E  R  N  Y  I  S  *  L  N  Y  I  H  E  R  F  P  K  *  H  D  E  Q  P  A  D  A  L  E  S  *  K  S  D  K  Q  S  I  L  D  A  *  *  K  I  R  R  L  Q  P  H  *  R  R  S  I  S  C  *  S  I  I  F  R :   C  G  K  *  *  *  Y  G  K  L  S  Y  G  R  *  S  K  S  S  Q  K  G  *  W  Y  A  V  V  V  L  L  *  F  V  G  F  R  G  F  Y  T  H  N  S  C  F  S  C  *  K  C  S  C  S  *  Q  G  L  *  A  Y  V  *  L  *  *  N  E  I  K  C  R  E  H  E  C  C  C  R  *  C  L  C  N  F  K  *  F  W  Q  R  Q  I  W  I  M  L  Y  F  F  T  W  S  T  L  C  I  L  V  G  G  N  R  N  F  C  *  N  R  G  D  I  D  D  I  L  I  N  M  C  R  V  F  F  C  Y  L  S  S  G  F  L  P  E  S  M  E  R  *  A  Y  I  L  Q  I  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42106" stop="42991"/>
                    <exon start="43280" stop="43647"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGPGPKNGEQYGAPFREEDWLDDERLNAKVSVQPESPRDQENTAKNINVVPDPDDAIEELLKRPFTVDNNFALEQFVQEEDTESTLLNQSSRDVNLYNHCAVAGPSCQQYNARASFDLTESGTSPLHLHEAPEVSSAPVNPEKPPYAVEEDFLEDFLEMDDLLVVDPNVQNFDHGTPNGQVFDKPAGNLETLQFDDFDGLSEFDLYHDAPSLLDNVGTPVVGQIAEPYMNNFVNGITYPDSTTYMSAFQNDMMNNQQMRLNHENQINNQFWMHDERFGVFNPIEGDQSVVDQSSSGVVNDNNMANYPMGANQNLAKKDDGTQSWFSSNLWAFVDSIPTTPASAAESALVVNRAFERMSSFSRMKLNVGNMNVAAGNASATSSSSGKGKYGLCCISLLGVLCAFLWVVIGTSAKIAGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="56290" PGL_stop="45085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56290" e_stop="56265"/>
            <exon e_start="56155" e_stop="56003"/>
            <exon e_start="55829" e_stop="55794"/>
            <exon e_start="54947" e_stop="54885"/>
            <exon e_start="53572" e_stop="53482"/>
            <exon e_start="52722" e_stop="52681"/>
            <exon e_start="52596" e_stop="52488"/>
            <exon e_start="51598" e_stop="51484"/>
            <exon e_start="51395" e_stop="51160"/>
            <exon e_start="49661" e_stop="49611"/>
            <exon e_start="49483" e_stop="49342"/>
            <exon e_start="48668" e_stop="48624"/>
            <exon e_start="48427" e_stop="48323"/>
            <exon e_start="48207" e_stop="48166"/>
            <exon e_start="47447" e_stop="47268"/>
            <exon e_start="46320" e_stop="46207"/>
            <exon e_start="45778" e_stop="45367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.038" e_score="0.962"/>
          <exon-intron don_prob="0.830" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.759" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.898" e_score="0.941"/>
          <exon-intron don_prob="0.864" acc_prob="0.527" e_score="1.000"/>
          <exon-intron don_prob="0.833" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.223" e_score="1.000"/>
          <exon-intron don_prob="0.841" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.858" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="56290" e_stop="56265" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.038">
            <gDNA_intron_boundary i_start="56264" i_stop="56156" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56155" e_stop="56003" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.830" acc_prob="0.933">
            <gDNA_intron_boundary i_start="56002" i_stop="55830" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55829" e_stop="55794" e_length="36"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55793" i_stop="54948" i_length="846"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54947" e_stop="54885" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.993">
            <gDNA_intron_boundary i_start="54884" i_stop="53573" i_length="1312"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53572" e_stop="53482" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.942">
            <gDNA_intron_boundary i_start="53481" i_stop="52723" i_length="759"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52722" e_stop="52681" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.966" acc_prob="0.938">
            <gDNA_intron_boundary i_start="52680" i_stop="52597" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52596" e_stop="52488" e_length="109"/>
          </exon>
          <intron i_serial="7" don_prob="0.976" acc_prob="0.759">
            <gDNA_intron_boundary i_start="52487" i_stop="51599" i_length="889"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="51598" e_stop="51484" e_length="115"/>
          </exon>
          <intron i_serial="8" don_prob="0.892" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51483" i_stop="51396" i_length="88"/>
          </intron>
          <exon e_serial="9" e_score="0.941">
            <gDNA_exon_boundary e_start="51395" e_stop="51160" e_length="236"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.898">
            <gDNA_intron_boundary i_start="51159" i_stop="49662" i_length="1498"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="49661" e_stop="49611" e_length="51"/>
          </exon>
          <intron i_serial="10" don_prob="0.864" acc_prob="0.527">
            <gDNA_intron_boundary i_start="49610" i_stop="49484" i_length="127"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="49483" e_stop="49342" e_length="142"/>
          </exon>
          <intron i_serial="11" don_prob="0.833" acc_prob="0.997">
            <gDNA_intron_boundary i_start="49341" i_stop="48669" i_length="673"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="48668" e_stop="48624" e_length="45"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.223">
            <gDNA_intron_boundary i_start="48623" i_stop="48428" i_length="196"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="48427" e_stop="48323" e_length="105"/>
          </exon>
          <intron i_serial="13" don_prob="0.841" acc_prob="0.924">
            <gDNA_intron_boundary i_start="48322" i_stop="48208" i_length="115"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="48207" e_stop="48166" e_length="42"/>
          </exon>
          <intron i_serial="14" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48165" i_stop="47448" i_length="718"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="47447" e_stop="47268" e_length="180"/>
          </exon>
          <intron i_serial="15" don_prob="0.990" acc_prob="0.939">
            <gDNA_intron_boundary i_start="47267" i_stop="46321" i_length="947"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="46320" e_stop="46207" e_length="114"/>
          </exon>
          <intron i_serial="16" don_prob="0.997" acc_prob="0.858">
            <gDNA_intron_boundary i_start="46206" i_stop="45779" i_length="428"/>
          </intron>
          <exon e_serial="17" e_score="0.983">
            <gDNA_exon_boundary e_start="45778" e_stop="45367" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56290" stop="56265"/>
              <exon start="56155" stop="56003"/>
              <exon start="55829" stop="55794"/>
              <exon start="54947" stop="54885"/>
              <exon start="53572" stop="53482"/>
              <exon start="52722" stop="52681"/>
              <exon start="52596" stop="52492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52546" stop="52488"/>
              <exon start="51598" stop="51484"/>
              <exon start="51395" stop="51160"/>
              <exon start="49661" stop="49611"/>
              <exon start="49483" stop="49342"/>
              <exon start="48668" stop="48624"/>
              <exon start="48427" stop="48379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49468" stop="49342"/>
              <exon start="48668" stop="48624"/>
              <exon start="48427" stop="48323"/>
              <exon start="48207" stop="48166"/>
              <exon start="47447" stop="47268"/>
              <exon start="46320" stop="46207"/>
              <exon start="45778" stop="45406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48207" stop="48166"/>
              <exon start="47447" stop="47268"/>
              <exon start="46320" stop="46207"/>
              <exon start="45778" stop="45367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48207" stop="48166"/>
              <exon start="47447" stop="47268"/>
              <exon start="46320" stop="46207"/>
              <exon start="45778" stop="45368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48207" stop="48166"/>
              <exon start="47447" stop="47268"/>
              <exon start="46320" stop="46207"/>
              <exon start="45778" stop="45541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTCGCAGCAGCATCACTTGGACAG : GTCTATCAAGCTAGGCTTCGTTCTACCAGGGAAGTTGTTGCTGTGAAGGTGCAGAGACCTGGAGTTCAAAGTGCAATCTCCTTGGACATATTGATTTTACGATATCTCGCAGGCTTAATAAAGAAGGCAGGAAAACTTAATACCGACCTTCAG : GCAGTTGTTGATGAGTGGGCCTCAAGTCTTTTTCGG : GTGGTCAAATTGAATGCAGGAGATGGACTACAAACAAGAAGCACGGAATGGAGTCAAATTTCG : GCAATTGTATGGTTCAATACAGGATGTTGTGGTTCCTGAAATGAATTTGGCACTGACAACCCGGAAAGTGCTCATTATGCAGTGGCTAGAG : GGGCAAAAGCTGGCTGGGGTCAAGGATCTTTATTTGGTTGAG : GTAGGGGTTTATTGCTCATTCAATCAACTTCTAGAGTATGGATTCTATCATGCAGATCCACATCCTGGAAACCTTCTTCGTACATATGACGGGAAACTAGCCTACTTAG : ATTTCGGTATGATGGGTGAATTCAAACAAGAATATCGTGATGGTTTCATTGAAGCATGTCTCCATCTAGTGAATCGTGATTACAGTGCATTGGCCAAGGATTTTGTCACTCTTGG : GCTCATTCCGCCCACAAGTGACAAAGTTGCCGTTACAGAAGCCCTAACAGGTTTTTTCCTTTATATTGACATTATTAGCTATATACAGTTAAATTCTAGACCTAGAAAGTAATCTAGTTGTTGTATTCTTCTTTACTGATATGAATTTCCCCTTTAGGTGTTTTTCGGGATGCTGTAGCCAAAGGAGTCCGCAATGTGAGTTTTGGGGATCTTCTCGGAGATCTGGGATTCACCAT : GTACAAATTTAAGTTTCAAATACCTTCTTATTTCTCTCTTGTCATCCGAAG : CCTTGCTGTGTTGGAGGGCATTGCTATTGGCATCAACCCAGAATACAAAGTCCTGGGTAGTACATACCCATGGATTGCTAGAAAAGTACTAACTGATAGCTCACCGAAACTAAAAGCTTCTTTAAGAGCACTTCTTTATAAG : GATGGTCAGTTCAGGATTGATCGACTAGAGTCTCTCTTATCAGAG : TCTCTCCGTGCCAAGACAGAAAGAACCCTGATAGAGAATCAAAATGGTGGGATTGATTCGAAGGTCATTATCAAGCAAATTCTTTCTTTTACACTGGATGATAAG : GGTGCCTTTATCAGGGAAATTCTACTTGAGGAATTTTCTAAG : GGTATGGTTGCACTTGGTGTTGCAACTGTCGATTCAGTAACAAATGCAGTTGCAACTACATTACCGTTCTCTCCATCCCAACCATCTTCAATGACTGATGAAGATATTACTAATCTTAGAAATTTGCAACGTCTATTACTGTTGATATCAGGACTCCAAGAAAATGAGAACCCCAGCATG : AAGGTTAATGGAGTTAGAACATCCAACAAGCAGATGATATTTTTAAACGGAGCACCTCTTCAGCAATTTGAAGCTGTCCAAGAATATCTACCCCTCCTTTCAGTTTTACCTGAG : CTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGTTGTACGAAATATAGTATATATGAAGGCAAAATGTTGTAATTCTCCTATTACAATACACTACTTAAAAAAAAAAATTCTTGTACCATTAGAC</gDNA_template>
            <first_frame> L  S  Q  Q  H  H  L  D  R :   S  I  K  L  G  F  V  L  P  G  K  L  L  L  *  R  C  R  D  L  E  F  K  V  Q  S  P  W  T  Y  *  F  Y  D  I  S  Q  A  *  *  R  R  Q  E  N  L  I  P  T  F  R :   Q  L  L  M  S  G  P  Q  V  F  F  G :   W  S  N  *  M  Q  E  M  D  Y  K  Q  E  A  R  N  G  V  K  F  R :   Q  L  Y  G  S  I  Q  D  V  V  V  P  E  M  N  L  A  L  T  T  R  K  V  L  I  M  Q  W  L  E  :  G  Q  K  L  A  G  V  K  D  L  Y  L  V  E  :  V  G  V  Y  C  S  F  N  Q  L  L  E  Y  G  F  Y  H  A  D  P  H  P  G  N  L  L  R  T  Y  D  G  K  L  A  Y  L   : D  F  G  M  M  G  E  F  K  Q  E  Y  R  D  G  F  I  E  A  C  L  H  L  V  N  R  D  Y  S  A  L  A  K  D  F  V  T  L  G :   L  I  P  P  T  S  D  K  V  A  V  T  E  A  L  T  G  F  F  L  Y  I  D  I  I  S  Y  I  Q  L  N  S  R  P  R  K  *  S  S  C  C  I  L  L  Y  *  Y  E  F  P  L  *  V  F  F  G  M  L  *  P  K  E  S  A  M  *  V  L  G  I  F  S  E  I  W  D  S  P   : C  T  N  L  S  F  K  Y  L  L  I  S  L  L  S  S  E   : A  L  L  C  W  R  A  L  L  L  A  S  T  Q  N  T  K  S  W  V  V  H  T  H  G  L  L  E  K  Y  *  L  I  A  H  R  N  *  K  L  L  *  E  H  F  F  I  R :   M  V  S  S  G  L  I  D  *  S  L  S  Y  Q  S :   L  S  V  P  R  Q  K  E  P  *  *  R  I  K  M  V  G  L  I  R  R  S  L  S  S  K  F  F  L  L  H  W  M  I  R :   V  P  L  S  G  K  F  Y  L  R  N  F  L  R :   V  W  L  H  L  V  L  Q  L  S  I  Q  *  Q  M  Q  L  Q  L  H  Y  R  S  L  H  P  N  H  L  Q  *  L  M  K  I  L  L  I  L  E  I  C  N  V  Y  Y  C  *  Y  Q  D  S  K  K  M  R  T  P  A  * :   R  L  M  E  L  E  H  P  T  S  R  *  Y  F  *  T  E  H  L  F  S  N  L  K  L  S  K  N  I  Y  P  S  F  Q  F  Y  L  S :   F  H  K  R  C  N  N  S  Y  F  A  C  L  L  I  S  L  E  S  W  L  P  E  S  L  Q  G  R  *  R  G  Y  S  C  E  I  F  Q  L  I  M  E  K  A  R  Y  S  I  L  V  L  L  T  E  H  F  G  L  W  I  F  Q  L  S  I  K  L  A  S  P  N  S  *  M  K  R  S  W  S  I  L  S  *  K  A  E  K  I  S  S  *  N  Y  A  F  A  R  N  T  E  V  *  K  Y  I  *  V  V  R  N  I  V  Y  M  K  A  K  C  C  N  S  P  I  T  I  H  Y  L  K  K  K  I  L  V  P  L  D </first_frame>
            <second_frame>  C  R  S  S  I  T  W  T   : G  L  S  S  *  A  S  F  Y  Q  G  S  C  C  C  E  G  A  E  T  W  S  S  K  C  N  L  L  G  H  I  D  F  T  I  S  R  R  L  N  K  E  G  R  K  T  *  Y  R  P  S   : G  S  C  *  *  V  G  L  K  S  F  S   : G  G  Q  I  E  C  R  R  W  T  T  N  K  K  H  G  M  E  S  N  F   : G  N  C  M  V  Q  Y  R  M  L  W  F  L  K  *  I  W  H  *  Q  P  G  K  C  S  L  C  S  G  *  R :   G  K  S  W  L  G  S  R  I  F  I  W  L  R :   *  G  F  I  A  H  S  I  N  F  *  S  M  D  S  I  M  Q  I  H  I  L  E  T  F  F  V  H  M  T  G  N  *  P  T  *  :  I  S  V  *  W  V  N  S  N  K  N  I  V  M  V  S  L  K  H  V  S  I  *  *  I  V  I  T  V  H  W  P  R  I  L  S  L  L   : G  S  F  R  P  Q  V  T  K  L  P  L  Q  K  P  *  Q  V  F  S  F  I  L  T  L  L  A  I  Y  S  *  I  L  D  L  E  S  N  L  V  V  V  F  F  F  T  D  M  N  F  P  F  R  C  F  S  G  C  C  S  Q  R  S  P  Q  C  E  F  W  G  S  S  R  R  S  G  I  H  H  :  V  Q  I  *  V  S  N  T  F  L  F  L  S  C  H  P  K  :  P  C  C  V  G  G  H  C  Y  W  H  Q  P  R  I  Q  S  P  G  *  Y  I  P  M  D  C  *  K  S  T  N  *  *  L  T  E  T  K  S  F  F  K  S  T  S  L  *   : G  W  S  V  Q  D  *  S  T  R  V  S  L  I  R   : V  S  P  C  Q  D  R  K  N  P  D  R  E  S  K  W  W  D  *  F  E  G  H  Y  Q  A  N  S  F  F  Y  T  G  *  *   : G  C  L  Y  Q  G  N  S  T  *  G  I  F  *   : G  Y  G  C  T  W  C  C  N  C  R  F  S  N  K  C  S  C  N  Y  I  T  V  L  S  I  P  T  I  F  N  D  *  *  R  Y  Y  *  S  *  K  F  A  T  S  I  T  V  D  I  R  T  P  R  K  *  E  P  Q  H   : E  G  *  W  S  *  N  I  Q  Q  A  D  D  I  F  K  R  S  T  S  S  A  I  *  S  C  P  R  I  S  T  P  P  F  S  F  T  *   : A  S  T  R  D  A  T  T  V  T  S  L  A  C  *  F  R  W  K  A  G  F  P  S  R  C  K  D  V  K  E  G  I  L  V  K  Y  F  S  L  S  W  K  K  Q  D  I  L  Y  W  Y  S  S  Q  N  I  L  V  C  G  F  S  N  Y  Q  S  S  L  P  V  L  T  P  K  *  R  D  L  G  R  F  Y  L  K  R  Q  R  R  S  V  L  E  T  M  H  L  Q  E  I  Q  K  S  R  N  I  Y  R  L  Y  E  I  *  Y  I  *  R  Q  N  V  V  I  L  L  L  Q  Y  T  T  *  K  K  K  F  L  Y  H  *   </second_frame>
            <third_frame>   V  A  A  A  S  L  G  Q  :  V  Y  Q  A  R  L  R  S  T  R  E  V  V  A  V  K  V  Q  R  P  G  V  Q  S  A  I  S  L  D  I  L  I  L  R  Y  L  A  G  L  I  K  K  A  G  K  L  N  T  D  L  Q  :  A  V  V  D  E  W  A  S  S  L  F  R  :  V  V  K  L  N  A  G  D  G  L  Q  T  R  S  T  E  W  S  Q  I  S  :  A  I  V  W  F  N  T  G  C  C  G  S  *  N  E  F  G  T  D  N  P  E  S  A  H  Y  A  V  A  R   : G  A  K  A  G  W  G  Q  G  S  L  F  G  *   : G  R  G  L  L  L  I  Q  S  T  S  R  V  W  I  L  S  C  R  S  T  S  W  K  P  S  S  Y  I  *  R  E  T  S  L  L  R :   F  R  Y  D  G  *  I  Q  T  R  I  S  *  W  F  H  *  S  M  S  P  S  S  E  S  *  L  Q  C  I  G  Q  G  F  C  H  S  W  :  A  H  S  A  H  K  *  Q  S  C  R  Y  R  S  P  N  R  F  F  P  L  Y  *  H  Y  *  L  Y  T  V  K  F  *  T  *  K  V  I  *  L  L  Y  S  S  L  L  I  *  I  S  P  L  G  V  F  R  D  A  V  A  K  G  V  R  N  V  S  F  G  D  L  L  G  D  L  G  F  T  M :   Y  K  F  K  F  Q  I  P  S  Y  F  S  L  V  I  R  S :   L  A  V  L  E  G  I  A  I  G  I  N  P  E  Y  K  V  L  G  S  T  Y  P  W  I  A  R  K  V  L  T  D  S  S  P  K  L  K  A  S  L  R  A  L  L  Y  K  :  D  G  Q  F  R  I  D  R  L  E  S  L  L  S  E  :  S  L  R  A  K  T  E  R  T  L  I  E  N  Q  N  G  G  I  D  S  K  V  I  I  K  Q  I  L  S  F  T  L  D  D  K  :  G  A  F  I  R  E  I  L  L  E  E  F  S  K  :  G  M  V  A  L  G  V  A  T  V  D  S  V  T  N  A  V  A  T  T  L  P  F  S  P  S  Q  P  S  S  M  T  D  E  D  I  T  N  L  R  N  L  Q  R  L  L  L  L  I  S  G  L  Q  E  N  E  N  P  S  M  :  K  V  N  G  V  R  T  S  N  K  Q  M  I  F  L  N  G  A  P  L  Q  Q  F  E  A  V  Q  E  Y  L  P  L  L  S  V  L  P  E  :  L  P  Q  E  M  Q  Q  Q  L  L  R  L  P  A  D  F  A  G  K  L  A  S  R  V  A  A  R  T  L  K  R  V  F  L  *  N  I  S  A  Y  H  G  K  S  K  I  F  Y  I  G  T  P  H  R  T  F  W  F  V  D  F  P  I  I  N  Q  A  C  Q  S  *  L  L  N  E  E  I  L  V  D  F  I  L  K  G  R  E  D  Q  F  L  K  L  C  I  C  K  K  Y  R  S  L  E  I  Y  I  G  C  T  K  Y  S  I  Y  E  G  K  M  L  *  F  S  Y  Y  N  T  L  L  K  K  K  N  S  C  T  I  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51251" stop="51160"/>
                    <exon start="49661" stop="49611"/>
                    <exon start="49483" stop="49342"/>
                    <exon start="48668" stop="48624"/>
                    <exon start="48427" stop="48323"/>
                    <exon start="48207" stop="48166"/>
                    <exon start="47447" stop="47268"/>
                    <exon start="46320" stop="46207"/>
                    <exon start="45778" stop="45674"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISPLGVFRDAVAKGVRNVSFGDLLGDLGFTMYKFKFQIPSYFSLVIRSLAVLEGIAIGINPEYKVLGSTYPWIARKVLTDSSPKLKASLRALLYKDGQFRIDRLESLLSESLRAKTERTLIENQNGGIDSKVIIKQILSFTLDDKGAFIREILLEEFSKGMVALGVATVDSVTNAVATTLPFSPSQPSSMTDEDITNLRNLQRLLLLISGLQENENPSMKVNGVRTSNKQMIFLNGAPLQQFEAVQEYLPLLSVLPELPQEMQQQLLRLPADFAGKLASRVAARTLKRVFL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54934" stop="54885"/>
                    <exon start="53572" stop="53482"/>
                    <exon start="52722" stop="52681"/>
                    <exon start="52596" stop="52488"/>
                    <exon start="51598" stop="51484"/>
                    <exon start="51395" stop="51284"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQEMDYKQEARNGVKFRQLYGSIQDVVVPEMNLALTTRKVLIMQWLEGQKLAGVKDLYLVEVGVYCSFNQLLEYGFYHADPHPGNLLRTYDGKLAYLDFGMMGEFKQEYRDGFIEACLHLVNRDYSALAKDFVTLGLIPPTSDKVAVTEALTGFFLYIDIISYIQLNSRPRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45781" e_stop="45085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="45781" e_stop="45085" e_length="697"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45781" stop="45085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTTCCACAAGAGATGCAACAACAGTTACTTCGCTTGCCTGCTGATTTCGCTGGAAAGCTGGCTTCCCGAGTCGCTGCAAGGACGTTAAAGAGGGTATTCTTGTGAAATATTTCAGCTTATCATGGAAAAAGCAAGATATTCTATATTGGTACTCCTCACAGAACATTTTGGTTTGTGGATTTTCCAATTATCAATCAAGCTTGCCAGTCCTAACTCCTAAATGAAGAGATCTTGGTCGATTTTATCTTAAAAGGCAGAGAAGATCAGTTCTTGAAACTATGCATTTGCAAGAAATACAGAAGTCTAGAAATATATATAGGTTGTACGAAATATAGTATATATGAAGGCAAAATGTTGTAATTCTCCTATTACAATACACTACTTAAAAAAAAAAATTCTTGTACCATTAGACTTTAGAACTAGCTGAAATGTGCCATTTGTGCCTGGCTGGAGAAGGGAAGAGACCGCCTTCCCCAAGGAATATAGCGTTGGACTGGCTGATTATTTTGCTCGATGATGCATACACTGAGACCGACGGCGTTGGCCAGACTTCTATTACAGAGTGTTTATGTTGACAGAAATGGCATTTGTCTTTCTTTTTAGTTTATTCACAAGAACCATACATACACATTATGATCCCATCGGTGCAGTCTGAGAAAGAGGTAAAATGTAAACAGACCTTACTCTATCTTTG</gDNA_template>
            <first_frame> Q  L  P  Q  E  M  Q  Q  Q  L  L  R  L  P  A  D  F  A  G  K  L  A  S  R  V  A  A  R  T  L  K  R  V  F  L  *  N  I  S  A  Y  H  G  K  S  K  I  F  Y  I  G  T  P  H  R  T  F  W  F  V  D  F  P  I  I  N  Q  A  C  Q  S  *  L  L  N  E  E  I  L  V  D  F  I  L  K  G  R  E  D  Q  F  L  K  L  C  I  C  K  K  Y  R  S  L  E  I  Y  I  G  C  T  K  Y  S  I  Y  E  G  K  M  L  *  F  S  Y  Y  N  T  L  L  K  K  K  N  S  C  T  I  R  L  *  N  *  L  K  C  A  I  C  A  W  L  E  K  G  R  D  R  L  P  Q  G  I  *  R  W  T  G  *  L  F  C  S  M  M  H  T  L  R  P  T  A  L  A  R  L  L  L  Q  S  V  Y  V  D  R  N  G  I  C  L  S  F  *  F  I  H  K  N  H  T  Y  T  L  *  S  H  R  C  S  L  R  K  R  *  N  V  N  R  P  Y  S  I  F  </first_frame>
            <second_frame>  S  F  H  K  R  C  N  N  S  Y  F  A  C  L  L  I  S  L  E  S  W  L  P  E  S  L  Q  G  R  *  R  G  Y  S  C  E  I  F  Q  L  I  M  E  K  A  R  Y  S  I  L  V  L  L  T  E  H  F  G  L  W  I  F  Q  L  S  I  K  L  A  S  P  N  S  *  M  K  R  S  W  S  I  L  S  *  K  A  E  K  I  S  S  *  N  Y  A  F  A  R  N  T  E  V  *  K  Y  I  *  V  V  R  N  I  V  Y  M  K  A  K  C  C  N  S  P  I  T  I  H  Y  L  K  K  K  I  L  V  P  L  D  F  R  T  S  *  N  V  P  F  V  P  G  W  R  R  E  E  T  A  F  P  K  E  Y  S  V  G  L  A  D  Y  F  A  R  *  C  I  H  *  D  R  R  R  W  P  D  F  Y  Y  R  V  F  M  L  T  E  M  A  F  V  F  L  F  S  L  F  T  R  T  I  H  T  H  Y  D  P  I  G  A  V  *  E  R  G  K  M  *  T  D  L  T  L  S  L </second_frame>
            <third_frame>   A  S  T  R  D  A  T  T  V  T  S  L  A  C  *  F  R  W  K  A  G  F  P  S  R  C  K  D  V  K  E  G  I  L  V  K  Y  F  S  L  S  W  K  K  Q  D  I  L  Y  W  Y  S  S  Q  N  I  L  V  C  G  F  S  N  Y  Q  S  S  L  P  V  L  T  P  K  *  R  D  L  G  R  F  Y  L  K  R  Q  R  R  S  V  L  E  T  M  H  L  Q  E  I  Q  K  S  R  N  I  Y  R  L  Y  E  I  *  Y  I  *  R  Q  N  V  V  I  L  L  L  Q  Y  T  T  *  K  K  K  F  L  Y  H  *  T  L  E  L  A  E  M  C  H  L  C  L  A  G  E  G  K  R  P  P  S  P  R  N  I  A  L  D  W  L  I  I  L  L  D  D  A  Y  T  E  T  D  G  V  G  Q  T  S  I  T  E  C  L  C  *  Q  K  W  H  L  S  F  F  L  V  Y  S  Q  E  P  Y  I  H  I  M  I  P  S  V  Q  S  E  K  E  V  K  C  K  Q  T  L  L  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0039E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="66789" PGL_stop="70685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66789" e_stop="67487"/>
            <exon e_start="68191" e_stop="68974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66789" e_stop="67487" e_length="699"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="68191" e_stop="68974" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66789" stop="67248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66939" stop="67366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66960" stop="67425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66965" stop="67487"/>
              <exon start="68191" stop="68388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66965" stop="67487"/>
              <exon start="68191" stop="68289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66965" stop="67487"/>
              <exon start="68191" stop="68272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66969" stop="67487"/>
              <exon start="68191" stop="68289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66970" stop="67487"/>
              <exon start="68191" stop="68382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66975" stop="67487"/>
              <exon start="68191" stop="68359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66976" stop="67487"/>
              <exon start="68191" stop="68319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66978" stop="67487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66979" stop="67487"/>
              <exon start="68191" stop="68354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66979" stop="67420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66989" stop="67467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66989" stop="67433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66995" stop="67487"/>
              <exon start="68191" stop="68383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67142" stop="67487"/>
              <exon start="68191" stop="68376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67236" stop="67487"/>
              <exon start="68191" stop="68521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67473" stop="67487"/>
              <exon start="68191" stop="68776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68191" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68420" stop="68974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68436" stop="68854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68614" stop="68973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTCTAAAATTCACATACTTGAAAATTTGATTCGAAACTATTACGAATAGCCGTACTTATTAATTTCTTTTTCATTATGTAAATCTCGAAATTGAAAAGATAGGAGGCATATCCCAATTAGTAGTAGTATTTATTATATTAGTCCATTGTCTTCCATTTTCCACTACCTCATCAGTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG : ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGAAATGAATTGGCCGAGCTAGTTTGAACAACCTGCATT</gDNA_template>
            <first_frame> F  L  *  N  S  H  T  *  K  F  D  S  K  L  L  R  I  A  V  L  I  N  F  F  F  I  M  *  I  S  K  L  K  R  *  E  A  Y  P  N  *  *  *  Y  L  L  Y  *  S  I  V  F  H  F  P  L  P  H  Q  *  A  L  C  L  E  S  S  I  F  K  F  P  I  *  E  K  T  I  M  A  E  S  S  P  V  R  F  G  I  L  G  C  A  N  I  A  R  K  V  S  R  A  I  A  L  S  P  N  A  T  I  S  A  V  G  S  R  S  I  E  K  A  T  A  Y  A  K  E  N  G  Y  P  S  T  T  K  I  Y  G  S  Y  E  A  V  L  D  D  P  E  V  D  A  V  Y  V  P  L  P  T  S  L  H  V  K  W  A  V  L  A  A  Q  K  K  K  H  V  L  L  E  K  P  V  A  L  N  V  K  E  L  D  M  I  L  E  G  C  E  S  N  G  V  Q  Y  M  D  A  T  M  W  M  H  H  P  R  T  A  K  M  K  E  F  L  S  D  S  Q  R  F  G  Q  L  K  S  :  I  H  S  T  F  S  Y  L  G  D  A  E  F  L  E  N  D  I  R  V  K  S  D  L  D  A  L  G  A  L  G  D  A  G  W  Y  S  I  R  A  I  L  W  T  N  D  Y  E  L  P  K  T  V  T  A  L  G  D  P  E  F  N  E  A  G  V  I  L  S  C  G  A  S  L  S  W  K  D  G  R  V  A  T  F  Y  C  S  F  L  A  N  M  A  M  D  I  V  A  I  G  S  K  G  N  L  R  V  H  D  F  V  I  P  F  Q  E  N  V  A  P  F  Y  T  V  E  G  S  C  F  G  E  L  A  R  S  I  H  P  A  P  S  E  H  Q  V  N  T  D  L  P  Q  E  A  L  M  V  T  E  F  S  N  L  V  G  S  I  K  G  E  G  S  K  P  E  K  K  W  P  T  I  S  R  K  T  Q  L  V  V  D  A  V  K  A  S  I  E  K  G  F  E  P  V  E  I  I  Y  *  L  V  F  S  Y  L  S  C  E  I  *  T  L  C  V  V  V  T  E  C  C  I  S  E  *  G  L  *  A  S  V  C  *  Q  C  V  C  N  I  G  V  W  K  *  I  G  R  A  S  L  N  N  L  H  </first_frame>
            <second_frame>  F  S  K  I  H  I  L  E  N  L  I  R  N  Y  Y  E  *  P  Y  L  L  I  S  F  S  L  C  K  S  R  N  *  K  D  R  R  H  I  P  I  S  S  S  I  Y  Y  I  S  P  L  S  S  I  F  H  Y  L  I  S  E  L  C  A  L  R  V  P  F  S  S  S  Q  S  K  K  K  Q  *  W  Q  N  R  R  R  Y  V  L  V  F  *  V  V  L  T  L  L  V  K  Y  H  A  P  S  H  F  L  Q  T  P  L  S  P  P  S  A  A  V  R  S  K  K  R  R  R  T  P  R  K  T  V  I  R  Q  R  R  R  F  T  A  V  M  R  R  F  W  M  I  R  K  W  M  P  F  M  F  L  F  R  R  A  C  M  *  S  G  P  C  W  Q  P  R  R  R  N  M  F  C  W  K  S  L  L  R  *  T  *  R  S  W  I  *  Y  W  R  G  V  N  R  M  G  C  S  T  W  M  L  L  C  G  C  I  I  R  V  L  L  R  *  K  S  S  S  L  I  L  S  V  L  D  N  S  N  R :   Y  I  A  R  F  L  I  L  V  T  R  S  F  L  R  M  T  F  A  *  S  P  I  L  M  L  L  V  L  *  V  M  L  V  G  I  V  F  G  Q  S  C  G  L  M  I  M  N  C  Q  K  Q  *  Q  L  W  V  I  Q  N  L  M  K  L  E  L  S  Y  L  V  A  L  L  *  V  G  K  T  E  G  *  Q  L  F  I  V  H  F  *  L  I  W  P  W  T  S  L  L  L  D  P  K  E  I  C  G  S  M  T  L  *  F  H  F  K  K  M  L  L  R  F  T  L  W  K  V  R  V  L  V  N  L  L  D  Q  F  I  L  H  L  V  S  I  K  S  I  Q  I  F  L  K  R  L  *  W  *  R  S  F  Q  T  W  L  E  V  S  K  G  K  V  L  N  L  R  R  S  G  Q  R  L  V  E  R  H  N  L  W  W  M  L  S  R  H  Q  L  R  K  V  S  S  P  L  R  S  S  I  S  W  Y  L  A  I  F  L  V  K  S  E  R  Y  V  L  L  *  L  N  V  V  F  L  N  K  A  C  K  L  L  F  V  D  N  V  Y  V  I  *  V  F  G  N  E  L  A  E  L  V  *  T  T  C  I </second_frame>
            <third_frame>   S  L  K  F  T  Y  L  K  I  *  F  E  T  I  T  N  S  R  T  Y  *  F  L  F  H  Y  V  N  L  E  I  E  K  I  G  G  I  S  Q  L  V  V  V  F  I  I  L  V  H  C  L  P  F  S  T  T  S  S  V  S  F  V  P  *  E  F  H  F  Q  V  P  N  L  R  K  N  N  N  G  R  I  V  A  G  T  F  W  Y  F  R  L  C  *  H  C  S  *  S  I  T  R  H  R  T  F  S  K  R  H  Y  L  R  R  R  Q  P  F  D  R  K  S  D  G  V  R  Q  G  K  R  L  S  V  N  D  E  D  L  R  Q  L  *  G  G  S  G  *  S  G  S  G  C  R  L  C  S  S  S  D  E  P  A  C  E  V  G  R  V  G  S  P  E  E  E  T  C  F  A  G  K  A  C  C  V  K  R  E  G  A  G  Y  D  T  G  G  V  *  I  E  W  G  A  V  H  G  C  Y  Y  V  D  A  S  S  A  Y  C  *  D  E  R  V  P  L  *  F  S  A  F  W  T  T  Q  I   : D  T  *  H  V  F  L  S  W  *  R  G  V  S  *  E  *  H  S  R  E  V  R  S  *  C  S  W  C  S  R  *  C  W  L  V  *  Y  S  G  N  L  V  D  *  *  L  *  I  A  K  N  S  N  S  S  G  *  S  R  I  *  *  S  W  S  Y  P  I  L  W  R  F  F  E  L  E  R  R  K  G  S  N  F  L  L  F  I  F  S  *  Y  G  H  G  H  R  C  Y  W  I  Q  R  K  F  A  G  P  *  L  C  N  S  I  S  R  K  C  C  S  V  L  H  C  G  R  F  V  F  W  *  T  C  *  I  N  S  S  C  T  *  *  A  S  S  Q  Y  R  S  S  S  R  G  S  D  G  N  G  V  F  K  P  G  W  K  Y  Q  R  G  R  F  *  T  *  E  E  V  A  N  D  *  *  K  D  T  T  C  G  G  C  C  Q  G  I  N  *  E  R  F  R  A  R  *  D  H  L  L  V  G  I  *  L  S  F  L  *  N  L  N  A  M  C  C  C  N  *  M  L  Y  F  *  I  R  L  V  S  F  C  L  L  T  M  C  M  *  Y  R  C  L  E  M  N  W  P  S  *  F  E  Q  P  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67011" stop="67487"/>
                    <exon start="68191" stop="68811"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKTIMAESSPVRFGILGCANIARKVSRAIALSPNATISAVGSRSIEKATAYAKENGYPSTTKIYGSYEAVLDDPEVDAVYVPLPTSLHVKWAVLAAQKKKHVLLEKPVALNVKELDMILEGCESNGVQYMDATMWMHHPRTAKMKEFLSDSQRFGQLKSIHSTFSYLGDAEFLENDIRVKSDLDALGALGDAGWYSIRAILWTNDYELPKTVTALGDPEFNEAGVILSCGASLSWKDGRVATFYCSFLANMAMDIVAIGSKGNLRVHDFVIPFQENVAPFYTVEGSCFGELARSIHPAPSEHQVNTDLPQEALMVTEFSNLVGSIKGEGSKPEKKWPTISRKTQLVVDAVKASIEKGFEPVEIIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66789" e_stop="67487"/>
            <exon e_start="68191" e_stop="68944"/>
            <exon e_start="70664" e_stop="70684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.753" e_score="0.954"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66789" e_stop="67487" e_length="699"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="68191" e_stop="68944" e_length="754"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.753">
            <gDNA_intron_boundary i_start="68945" i_stop="70663" i_length="1719"/>
          </intron>
          <exon e_serial="3" e_score="0.714">
            <gDNA_exon_boundary e_start="70664" e_stop="70684" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66789" stop="67248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66939" stop="67366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66960" stop="67425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66965" stop="67487"/>
              <exon start="68191" stop="68388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66965" stop="67487"/>
              <exon start="68191" stop="68289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66965" stop="67487"/>
              <exon start="68191" stop="68272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66969" stop="67487"/>
              <exon start="68191" stop="68289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66970" stop="67487"/>
              <exon start="68191" stop="68382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66975" stop="67487"/>
              <exon start="68191" stop="68359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66976" stop="67487"/>
              <exon start="68191" stop="68319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66978" stop="67487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66979" stop="67487"/>
              <exon start="68191" stop="68354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66979" stop="67420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66989" stop="67467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66989" stop="67433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66995" stop="67487"/>
              <exon start="68191" stop="68383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67142" stop="67487"/>
              <exon start="68191" stop="68376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67236" stop="67487"/>
              <exon start="68191" stop="68521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67473" stop="67487"/>
              <exon start="68191" stop="68776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68191" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68436" stop="68854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68590" stop="68944"/>
              <exon start="70664" stop="70684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTCTAAAATTCACATACTTGAAAATTTGATTCGAAACTATTACGAATAGCCGTACTTATTAATTTCTTTTTCATTATGTAAATCTCGAAATTGAAAAGATAGGAGGCATATCCCAATTAGTAGTAGTATTTATTATATTAGTCCATTGTCTTCCATTTTCCACTACCTCATCAGTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG : ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGAAATGAA : AAGTCAAGAAGAAGAAAAAAA</gDNA_template>
            <first_frame> F  L  *  N  S  H  T  *  K  F  D  S  K  L  L  R  I  A  V  L  I  N  F  F  F  I  M  *  I  S  K  L  K  R  *  E  A  Y  P  N  *  *  *  Y  L  L  Y  *  S  I  V  F  H  F  P  L  P  H  Q  *  A  L  C  L  E  S  S  I  F  K  F  P  I  *  E  K  T  I  M  A  E  S  S  P  V  R  F  G  I  L  G  C  A  N  I  A  R  K  V  S  R  A  I  A  L  S  P  N  A  T  I  S  A  V  G  S  R  S  I  E  K  A  T  A  Y  A  K  E  N  G  Y  P  S  T  T  K  I  Y  G  S  Y  E  A  V  L  D  D  P  E  V  D  A  V  Y  V  P  L  P  T  S  L  H  V  K  W  A  V  L  A  A  Q  K  K  K  H  V  L  L  E  K  P  V  A  L  N  V  K  E  L  D  M  I  L  E  G  C  E  S  N  G  V  Q  Y  M  D  A  T  M  W  M  H  H  P  R  T  A  K  M  K  E  F  L  S  D  S  Q  R  F  G  Q  L  K  S  :  I  H  S  T  F  S  Y  L  G  D  A  E  F  L  E  N  D  I  R  V  K  S  D  L  D  A  L  G  A  L  G  D  A  G  W  Y  S  I  R  A  I  L  W  T  N  D  Y  E  L  P  K  T  V  T  A  L  G  D  P  E  F  N  E  A  G  V  I  L  S  C  G  A  S  L  S  W  K  D  G  R  V  A  T  F  Y  C  S  F  L  A  N  M  A  M  D  I  V  A  I  G  S  K  G  N  L  R  V  H  D  F  V  I  P  F  Q  E  N  V  A  P  F  Y  T  V  E  G  S  C  F  G  E  L  A  R  S  I  H  P  A  P  S  E  H  Q  V  N  T  D  L  P  Q  E  A  L  M  V  T  E  F  S  N  L  V  G  S  I  K  G  E  G  S  K  P  E  K  K  W  P  T  I  S  R  K  T  Q  L  V  V  D  A  V  K  A  S  I  E  K  G  F  E  P  V  E  I  I  Y  *  L  V  F  S  Y  L  S  C  E  I  *  T  L  C  V  V  V  T  E  C  C  I  S  E  *  G  L  *  A  S  V  C  *  Q  C  V  C  N  I  G  V  W  K  *   : K  V  K  K  K  K  K  </first_frame>
            <second_frame>  F  S  K  I  H  I  L  E  N  L  I  R  N  Y  Y  E  *  P  Y  L  L  I  S  F  S  L  C  K  S  R  N  *  K  D  R  R  H  I  P  I  S  S  S  I  Y  Y  I  S  P  L  S  S  I  F  H  Y  L  I  S  E  L  C  A  L  R  V  P  F  S  S  S  Q  S  K  K  K  Q  *  W  Q  N  R  R  R  Y  V  L  V  F  *  V  V  L  T  L  L  V  K  Y  H  A  P  S  H  F  L  Q  T  P  L  S  P  P  S  A  A  V  R  S  K  K  R  R  R  T  P  R  K  T  V  I  R  Q  R  R  R  F  T  A  V  M  R  R  F  W  M  I  R  K  W  M  P  F  M  F  L  F  R  R  A  C  M  *  S  G  P  C  W  Q  P  R  R  R  N  M  F  C  W  K  S  L  L  R  *  T  *  R  S  W  I  *  Y  W  R  G  V  N  R  M  G  C  S  T  W  M  L  L  C  G  C  I  I  R  V  L  L  R  *  K  S  S  S  L  I  L  S  V  L  D  N  S  N  R :   Y  I  A  R  F  L  I  L  V  T  R  S  F  L  R  M  T  F  A  *  S  P  I  L  M  L  L  V  L  *  V  M  L  V  G  I  V  F  G  Q  S  C  G  L  M  I  M  N  C  Q  K  Q  *  Q  L  W  V  I  Q  N  L  M  K  L  E  L  S  Y  L  V  A  L  L  *  V  G  K  T  E  G  *  Q  L  F  I  V  H  F  *  L  I  W  P  W  T  S  L  L  L  D  P  K  E  I  C  G  S  M  T  L  *  F  H  F  K  K  M  L  L  R  F  T  L  W  K  V  R  V  L  V  N  L  L  D  Q  F  I  L  H  L  V  S  I  K  S  I  Q  I  F  L  K  R  L  *  W  *  R  S  F  Q  T  W  L  E  V  S  K  G  K  V  L  N  L  R  R  S  G  Q  R  L  V  E  R  H  N  L  W  W  M  L  S  R  H  Q  L  R  K  V  S  S  P  L  R  S  S  I  S  W  Y  L  A  I  F  L  V  K  S  E  R  Y  V  L  L  *  L  N  V  V  F  L  N  K  A  C  K  L  L  F  V  D  N  V  Y  V  I  *  V  F  G  N  E  :  K  S  R  R  R  K  K </second_frame>
            <third_frame>   S  L  K  F  T  Y  L  K  I  *  F  E  T  I  T  N  S  R  T  Y  *  F  L  F  H  Y  V  N  L  E  I  E  K  I  G  G  I  S  Q  L  V  V  V  F  I  I  L  V  H  C  L  P  F  S  T  T  S  S  V  S  F  V  P  *  E  F  H  F  Q  V  P  N  L  R  K  N  N  N  G  R  I  V  A  G  T  F  W  Y  F  R  L  C  *  H  C  S  *  S  I  T  R  H  R  T  F  S  K  R  H  Y  L  R  R  R  Q  P  F  D  R  K  S  D  G  V  R  Q  G  K  R  L  S  V  N  D  E  D  L  R  Q  L  *  G  G  S  G  *  S  G  S  G  C  R  L  C  S  S  S  D  E  P  A  C  E  V  G  R  V  G  S  P  E  E  E  T  C  F  A  G  K  A  C  C  V  K  R  E  G  A  G  Y  D  T  G  G  V  *  I  E  W  G  A  V  H  G  C  Y  Y  V  D  A  S  S  A  Y  C  *  D  E  R  V  P  L  *  F  S  A  F  W  T  T  Q  I   : D  T  *  H  V  F  L  S  W  *  R  G  V  S  *  E  *  H  S  R  E  V  R  S  *  C  S  W  C  S  R  *  C  W  L  V  *  Y  S  G  N  L  V  D  *  *  L  *  I  A  K  N  S  N  S  S  G  *  S  R  I  *  *  S  W  S  Y  P  I  L  W  R  F  F  E  L  E  R  R  K  G  S  N  F  L  L  F  I  F  S  *  Y  G  H  G  H  R  C  Y  W  I  Q  R  K  F  A  G  P  *  L  C  N  S  I  S  R  K  C  C  S  V  L  H  C  G  R  F  V  F  W  *  T  C  *  I  N  S  S  C  T  *  *  A  S  S  Q  Y  R  S  S  S  R  G  S  D  G  N  G  V  F  K  P  G  W  K  Y  Q  R  G  R  F  *  T  *  E  E  V  A  N  D  *  *  K  D  T  T  C  G  G  C  C  Q  G  I  N  *  E  R  F  R  A  R  *  D  H  L  L  V  G  I  *  L  S  F  L  *  N  L  N  A  M  C  C  C  N  *  M  L  Y  F  *  I  R  L  V  S  F  C  L  L  T  M  C  M  *  Y  R  C  L  E  M  K :   S  Q  E  E  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67011" stop="67487"/>
                    <exon start="68191" stop="68811"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKTIMAESSPVRFGILGCANIARKVSRAIALSPNATISAVGSRSIEKATAYAKENGYPSTTKIYGSYEAVLDDPEVDAVYVPLPTSLHVKWAVLAAQKKKHVLLEKPVALNVKELDMILEGCESNGVQYMDATMWMHHPRTAKMKEFLSDSQRFGQLKSIHSTFSYLGDAEFLENDIRVKSDLDALGALGDAGWYSIRAILWTNDYELPKTVTALGDPEFNEAGVILSCGASLSWKDGRVATFYCSFLANMAMDIVAIGSKGNLRVHDFVIPFQENVAPFYTVEGSCFGELARSIHPAPSEHQVNTDLPQEALMVTEFSNLVGSIKGEGSKPEKKWPTISRKTQLVVDAVKASIEKGFEPVEIIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="66789" e_stop="67487"/>
            <exon e_start="68191" e_stop="68947"/>
            <exon e_start="70664" e_stop="70684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.753" e_score="0.954"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66789" e_stop="67487" e_length="699"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="68191" e_stop="68947" e_length="757"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.753">
            <gDNA_intron_boundary i_start="68948" i_stop="70663" i_length="1716"/>
          </intron>
          <exon e_serial="3" e_score="0.714">
            <gDNA_exon_boundary e_start="70664" e_stop="70684" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66789" stop="67248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66939" stop="67366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66960" stop="67425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66965" stop="67487"/>
              <exon start="68191" stop="68388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66965" stop="67487"/>
              <exon start="68191" stop="68289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66965" stop="67487"/>
              <exon start="68191" stop="68272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66969" stop="67487"/>
              <exon start="68191" stop="68289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66970" stop="67487"/>
              <exon start="68191" stop="68382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66975" stop="67487"/>
              <exon start="68191" stop="68359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66976" stop="67487"/>
              <exon start="68191" stop="68319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66978" stop="67487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66979" stop="67487"/>
              <exon start="68191" stop="68354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66979" stop="67420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66989" stop="67467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66989" stop="67433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66995" stop="67487"/>
              <exon start="68191" stop="68383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67142" stop="67487"/>
              <exon start="68191" stop="68376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67236" stop="67487"/>
              <exon start="68191" stop="68521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67473" stop="67487"/>
              <exon start="68191" stop="68776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68191" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68436" stop="68854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68500" stop="68947"/>
              <exon start="70664" stop="70684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTCTAAAATTCACATACTTGAAAATTTGATTCGAAACTATTACGAATAGCCGTACTTATTAATTTCTTTTTCATTATGTAAATCTCGAAATTGAAAAGATAGGAGGCATATCCCAATTAGTAGTAGTATTTATTATATTAGTCCATTGTCTTCCATTTTCCACTACCTCATCAGTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG : ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGCTTCTGTTTGTTGACAATGTGTATGTAATATAGGTGTTTGGAAATGAATTG : AAGTCAAGAAGAAGAAAAAAA</gDNA_template>
            <first_frame> F  L  *  N  S  H  T  *  K  F  D  S  K  L  L  R  I  A  V  L  I  N  F  F  F  I  M  *  I  S  K  L  K  R  *  E  A  Y  P  N  *  *  *  Y  L  L  Y  *  S  I  V  F  H  F  P  L  P  H  Q  *  A  L  C  L  E  S  S  I  F  K  F  P  I  *  E  K  T  I  M  A  E  S  S  P  V  R  F  G  I  L  G  C  A  N  I  A  R  K  V  S  R  A  I  A  L  S  P  N  A  T  I  S  A  V  G  S  R  S  I  E  K  A  T  A  Y  A  K  E  N  G  Y  P  S  T  T  K  I  Y  G  S  Y  E  A  V  L  D  D  P  E  V  D  A  V  Y  V  P  L  P  T  S  L  H  V  K  W  A  V  L  A  A  Q  K  K  K  H  V  L  L  E  K  P  V  A  L  N  V  K  E  L  D  M  I  L  E  G  C  E  S  N  G  V  Q  Y  M  D  A  T  M  W  M  H  H  P  R  T  A  K  M  K  E  F  L  S  D  S  Q  R  F  G  Q  L  K  S  :  I  H  S  T  F  S  Y  L  G  D  A  E  F  L  E  N  D  I  R  V  K  S  D  L  D  A  L  G  A  L  G  D  A  G  W  Y  S  I  R  A  I  L  W  T  N  D  Y  E  L  P  K  T  V  T  A  L  G  D  P  E  F  N  E  A  G  V  I  L  S  C  G  A  S  L  S  W  K  D  G  R  V  A  T  F  Y  C  S  F  L  A  N  M  A  M  D  I  V  A  I  G  S  K  G  N  L  R  V  H  D  F  V  I  P  F  Q  E  N  V  A  P  F  Y  T  V  E  G  S  C  F  G  E  L  A  R  S  I  H  P  A  P  S  E  H  Q  V  N  T  D  L  P  Q  E  A  L  M  V  T  E  F  S  N  L  V  G  S  I  K  G  E  G  S  K  P  E  K  K  W  P  T  I  S  R  K  T  Q  L  V  V  D  A  V  K  A  S  I  E  K  G  F  E  P  V  E  I  I  Y  *  L  V  F  S  Y  L  S  C  E  I  *  T  L  C  V  V  V  T  E  C  C  I  S  E  *  G  L  *  A  S  V  C  *  Q  C  V  C  N  I  G  V  W  K  *  I   : E  V  K  K  K  K  K  </first_frame>
            <second_frame>  F  S  K  I  H  I  L  E  N  L  I  R  N  Y  Y  E  *  P  Y  L  L  I  S  F  S  L  C  K  S  R  N  *  K  D  R  R  H  I  P  I  S  S  S  I  Y  Y  I  S  P  L  S  S  I  F  H  Y  L  I  S  E  L  C  A  L  R  V  P  F  S  S  S  Q  S  K  K  K  Q  *  W  Q  N  R  R  R  Y  V  L  V  F  *  V  V  L  T  L  L  V  K  Y  H  A  P  S  H  F  L  Q  T  P  L  S  P  P  S  A  A  V  R  S  K  K  R  R  R  T  P  R  K  T  V  I  R  Q  R  R  R  F  T  A  V  M  R  R  F  W  M  I  R  K  W  M  P  F  M  F  L  F  R  R  A  C  M  *  S  G  P  C  W  Q  P  R  R  R  N  M  F  C  W  K  S  L  L  R  *  T  *  R  S  W  I  *  Y  W  R  G  V  N  R  M  G  C  S  T  W  M  L  L  C  G  C  I  I  R  V  L  L  R  *  K  S  S  S  L  I  L  S  V  L  D  N  S  N  R :   Y  I  A  R  F  L  I  L  V  T  R  S  F  L  R  M  T  F  A  *  S  P  I  L  M  L  L  V  L  *  V  M  L  V  G  I  V  F  G  Q  S  C  G  L  M  I  M  N  C  Q  K  Q  *  Q  L  W  V  I  Q  N  L  M  K  L  E  L  S  Y  L  V  A  L  L  *  V  G  K  T  E  G  *  Q  L  F  I  V  H  F  *  L  I  W  P  W  T  S  L  L  L  D  P  K  E  I  C  G  S  M  T  L  *  F  H  F  K  K  M  L  L  R  F  T  L  W  K  V  R  V  L  V  N  L  L  D  Q  F  I  L  H  L  V  S  I  K  S  I  Q  I  F  L  K  R  L  *  W  *  R  S  F  Q  T  W  L  E  V  S  K  G  K  V  L  N  L  R  R  S  G  Q  R  L  V  E  R  H  N  L  W  W  M  L  S  R  H  Q  L  R  K  V  S  S  P  L  R  S  S  I  S  W  Y  L  A  I  F  L  V  K  S  E  R  Y  V  L  L  *  L  N  V  V  F  L  N  K  A  C  K  L  L  F  V  D  N  V  Y  V  I  *  V  F  G  N  E  L  :  K  S  R  R  R  K  K </second_frame>
            <third_frame>   S  L  K  F  T  Y  L  K  I  *  F  E  T  I  T  N  S  R  T  Y  *  F  L  F  H  Y  V  N  L  E  I  E  K  I  G  G  I  S  Q  L  V  V  V  F  I  I  L  V  H  C  L  P  F  S  T  T  S  S  V  S  F  V  P  *  E  F  H  F  Q  V  P  N  L  R  K  N  N  N  G  R  I  V  A  G  T  F  W  Y  F  R  L  C  *  H  C  S  *  S  I  T  R  H  R  T  F  S  K  R  H  Y  L  R  R  R  Q  P  F  D  R  K  S  D  G  V  R  Q  G  K  R  L  S  V  N  D  E  D  L  R  Q  L  *  G  G  S  G  *  S  G  S  G  C  R  L  C  S  S  S  D  E  P  A  C  E  V  G  R  V  G  S  P  E  E  E  T  C  F  A  G  K  A  C  C  V  K  R  E  G  A  G  Y  D  T  G  G  V  *  I  E  W  G  A  V  H  G  C  Y  Y  V  D  A  S  S  A  Y  C  *  D  E  R  V  P  L  *  F  S  A  F  W  T  T  Q  I   : D  T  *  H  V  F  L  S  W  *  R  G  V  S  *  E  *  H  S  R  E  V  R  S  *  C  S  W  C  S  R  *  C  W  L  V  *  Y  S  G  N  L  V  D  *  *  L  *  I  A  K  N  S  N  S  S  G  *  S  R  I  *  *  S  W  S  Y  P  I  L  W  R  F  F  E  L  E  R  R  K  G  S  N  F  L  L  F  I  F  S  *  Y  G  H  G  H  R  C  Y  W  I  Q  R  K  F  A  G  P  *  L  C  N  S  I  S  R  K  C  C  S  V  L  H  C  G  R  F  V  F  W  *  T  C  *  I  N  S  S  C  T  *  *  A  S  S  Q  Y  R  S  S  S  R  G  S  D  G  N  G  V  F  K  P  G  W  K  Y  Q  R  G  R  F  *  T  *  E  E  V  A  N  D  *  *  K  D  T  T  C  G  G  C  C  Q  G  I  N  *  E  R  F  R  A  R  *  D  H  L  L  V  G  I  *  L  S  F  L  *  N  L  N  A  M  C  C  C  N  *  M  L  Y  F  *  I  R  L  V  S  F  C  L  L  T  M  C  M  *  Y  R  C  L  E  M  N  * :   S  Q  E  E  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67011" stop="67487"/>
                    <exon start="68191" stop="68811"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKTIMAESSPVRFGILGCANIARKVSRAIALSPNATISAVGSRSIEKATAYAKENGYPSTTKIYGSYEAVLDDPEVDAVYVPLPTSLHVKWAVLAAQKKKHVLLEKPVALNVKELDMILEGCESNGVQYMDATMWMHHPRTAKMKEFLSDSQRFGQLKSIHSTFSYLGDAEFLENDIRVKSDLDALGALGDAGWYSIRAILWTNDYELPKTVTALGDPEFNEAGVILSCGASLSWKDGRVATFYCSFLANMAMDIVAIGSKGNLRVHDFVIPFQENVAPFYTVEGSCFGELARSIHPAPSEHQVNTDLPQEALMVTEFSNLVGSIKGEGSKPEKKWPTISRKTQLVVDAVKASIEKGFEPVEIIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="66789" e_stop="67487"/>
            <exon e_start="68191" e_stop="68897"/>
            <exon e_start="70664" e_stop="70685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.753" e_score="1.000"/>
          <exon-only e_score="0.682"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="66789" e_stop="67487" e_length="699"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="67488" i_stop="68190" i_length="703"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68191" e_stop="68897" e_length="707"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.753">
            <gDNA_intron_boundary i_start="68898" i_stop="70663" i_length="1766"/>
          </intron>
          <exon e_serial="3" e_score="0.682">
            <gDNA_exon_boundary e_start="70664" e_stop="70685" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66789" stop="67248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66930" stop="67487"/>
              <exon start="68191" stop="68897"/>
              <exon start="70664" stop="70685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66939" stop="67366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66960" stop="67425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66965" stop="67487"/>
              <exon start="68191" stop="68388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66965" stop="67487"/>
              <exon start="68191" stop="68289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66965" stop="67487"/>
              <exon start="68191" stop="68272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66969" stop="67487"/>
              <exon start="68191" stop="68289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66970" stop="67487"/>
              <exon start="68191" stop="68382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66975" stop="67487"/>
              <exon start="68191" stop="68359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66976" stop="67487"/>
              <exon start="68191" stop="68319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66978" stop="67487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66979" stop="67487"/>
              <exon start="68191" stop="68354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66979" stop="67420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66989" stop="67467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66989" stop="67433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66995" stop="67487"/>
              <exon start="68191" stop="68383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67142" stop="67487"/>
              <exon start="68191" stop="68376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67236" stop="67487"/>
              <exon start="68191" stop="68521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67473" stop="67487"/>
              <exon start="68191" stop="68776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68191" stop="68687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68436" stop="68854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275517" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTCTAAAATTCACATACTTGAAAATTTGATTCGAAACTATTACGAATAGCCGTACTTATTAATTTCTTTTTCATTATGTAAATCTCGAAATTGAAAAGATAGGAGGCATATCCCAATTAGTAGTAGTATTTATTATATTAGTCCATTGTCTTCCATTTTCCACTACCTCATCAGTGAGCTTTGTGCCTTGAGAGTTCCATTTTCAAGTTCCCAATCTAAGAAAAAACAATAATGGCAGAATCGTCGCCGGTACGTTTTGGTATTTTAGGTTGTGCTAACATTGCTCGTAAAGTATCACGCGCCATCGCACTTTCTCCAAACGCCACTATCTCCGCCGTCGGCAGCCGTTCGATCGAAAAAGCGACGGCGTACGCCAAGGAAAACGGTTATCCGTCAACGACGAAGATTTACGGCAGTTATGAGGCGGTTCTGGATGATCCGGAAGTGGATGCCGTTTATGTTCCTCTTCCGACGAGCCTGCATGTGAAGTGGGCCGTGTTGGCAGCCCAGAAGAAGAAACATGTTTTGCTGGAAAAGCCTGTTGCGTTAAACGTGAAGGAGCTGGATATGATACTGGAGGGGTGTGAATCGAATGGGGTGCAGTACATGGATGCTACTATGTGGATGCATCATCCGCGTACTGCTAAGATGAAAGAGTTCCTCTCTGATTCTCAGCGTTTTGGACAACTCAAATCG : ATACATAGCACGTTTTCTTATCTTGGTGACGCGGAGTTTCTTGAGAATGACATTCGCGTGAAGTCCGATCTTGATGCTCTTGGTGCTCTAGGTGATGCTGGTTGGTATAGTATTCGGGCAATCTTGTGGACTAATGATTATGAATTGCCAAAAACAGTAACAGCTCTGGGTGATCCAGAATTTAATGAAGCTGGAGTTATCCTATCTTGTGGCGCTTCTTTGAGTTGGAAAGACGGAAGGGTAGCAACTTTTTATTGTTCATTTTTAGCTAATATGGCCATGGACATCGTTGCTATTGGATCCAAAGGAAATTTGCGGGTCCATGACTTTGTAATTCCATTTCAAGAAAATGTTGCTCCGTTTTACACTGTGGAAGGTTCGTGTTTTGGTGAACTTGCTAGATCAATTCATCCTGCACCTAGTGAGCATCAAGTCAATACAGATCTTCCTCAAGAGGCTCTGATGGTAACGGAGTTTTCAAACCTGGTTGGAAGTATCAAAGGGGAAGGTTCTAAACCTGAGAAGAAGTGGCCAACGATTAGTAGAAAGACACAACTTGTGGTGGATGCTGTCAAGGCATCAATTGAGAAAGGTTTCGAGCCCGTTGAGATCATCTATTAGTTGGTATTTAGCTATCTTTCTTGTGAAATCTGAACGCTATGTGTTGTTGTAACTGAATGTTGTATTTCTGAATAAGGCTTGTAAGC : AAGTCAAGAAGAAGAAAAAAAG</gDNA_template>
            <first_frame> F  L  *  N  S  H  T  *  K  F  D  S  K  L  L  R  I  A  V  L  I  N  F  F  F  I  M  *  I  S  K  L  K  R  *  E  A  Y  P  N  *  *  *  Y  L  L  Y  *  S  I  V  F  H  F  P  L  P  H  Q  *  A  L  C  L  E  S  S  I  F  K  F  P  I  *  E  K  T  I  M  A  E  S  S  P  V  R  F  G  I  L  G  C  A  N  I  A  R  K  V  S  R  A  I  A  L  S  P  N  A  T  I  S  A  V  G  S  R  S  I  E  K  A  T  A  Y  A  K  E  N  G  Y  P  S  T  T  K  I  Y  G  S  Y  E  A  V  L  D  D  P  E  V  D  A  V  Y  V  P  L  P  T  S  L  H  V  K  W  A  V  L  A  A  Q  K  K  K  H  V  L  L  E  K  P  V  A  L  N  V  K  E  L  D  M  I  L  E  G  C  E  S  N  G  V  Q  Y  M  D  A  T  M  W  M  H  H  P  R  T  A  K  M  K  E  F  L  S  D  S  Q  R  F  G  Q  L  K  S  :  I  H  S  T  F  S  Y  L  G  D  A  E  F  L  E  N  D  I  R  V  K  S  D  L  D  A  L  G  A  L  G  D  A  G  W  Y  S  I  R  A  I  L  W  T  N  D  Y  E  L  P  K  T  V  T  A  L  G  D  P  E  F  N  E  A  G  V  I  L  S  C  G  A  S  L  S  W  K  D  G  R  V  A  T  F  Y  C  S  F  L  A  N  M  A  M  D  I  V  A  I  G  S  K  G  N  L  R  V  H  D  F  V  I  P  F  Q  E  N  V  A  P  F  Y  T  V  E  G  S  C  F  G  E  L  A  R  S  I  H  P  A  P  S  E  H  Q  V  N  T  D  L  P  Q  E  A  L  M  V  T  E  F  S  N  L  V  G  S  I  K  G  E  G  S  K  P  E  K  K  W  P  T  I  S  R  K  T  Q  L  V  V  D  A  V  K  A  S  I  E  K  G  F  E  P  V  E  I  I  Y  *  L  V  F  S  Y  L  S  C  E  I  *  T  L  C  V  V  V  T  E  C  C  I  S  E  *  G  L  *  A :   S  Q  E  E  E  K  K </first_frame>
            <second_frame>  F  S  K  I  H  I  L  E  N  L  I  R  N  Y  Y  E  *  P  Y  L  L  I  S  F  S  L  C  K  S  R  N  *  K  D  R  R  H  I  P  I  S  S  S  I  Y  Y  I  S  P  L  S  S  I  F  H  Y  L  I  S  E  L  C  A  L  R  V  P  F  S  S  S  Q  S  K  K  K  Q  *  W  Q  N  R  R  R  Y  V  L  V  F  *  V  V  L  T  L  L  V  K  Y  H  A  P  S  H  F  L  Q  T  P  L  S  P  P  S  A  A  V  R  S  K  K  R  R  R  T  P  R  K  T  V  I  R  Q  R  R  R  F  T  A  V  M  R  R  F  W  M  I  R  K  W  M  P  F  M  F  L  F  R  R  A  C  M  *  S  G  P  C  W  Q  P  R  R  R  N  M  F  C  W  K  S  L  L  R  *  T  *  R  S  W  I  *  Y  W  R  G  V  N  R  M  G  C  S  T  W  M  L  L  C  G  C  I  I  R  V  L  L  R  *  K  S  S  S  L  I  L  S  V  L  D  N  S  N  R :   Y  I  A  R  F  L  I  L  V  T  R  S  F  L  R  M  T  F  A  *  S  P  I  L  M  L  L  V  L  *  V  M  L  V  G  I  V  F  G  Q  S  C  G  L  M  I  M  N  C  Q  K  Q  *  Q  L  W  V  I  Q  N  L  M  K  L  E  L  S  Y  L  V  A  L  L  *  V  G  K  T  E  G  *  Q  L  F  I  V  H  F  *  L  I  W  P  W  T  S  L  L  L  D  P  K  E  I  C  G  S  M  T  L  *  F  H  F  K  K  M  L  L  R  F  T  L  W  K  V  R  V  L  V  N  L  L  D  Q  F  I  L  H  L  V  S  I  K  S  I  Q  I  F  L  K  R  L  *  W  *  R  S  F  Q  T  W  L  E  V  S  K  G  K  V  L  N  L  R  R  S  G  Q  R  L  V  E  R  H  N  L  W  W  M  L  S  R  H  Q  L  R  K  V  S  S  P  L  R  S  S  I  S  W  Y  L  A  I  F  L  V  K  S  E  R  Y  V  L  L  *  L  N  V  V  F  L  N  K  A  C  K   : Q  V  K  K  K  K  K   </second_frame>
            <third_frame>   S  L  K  F  T  Y  L  K  I  *  F  E  T  I  T  N  S  R  T  Y  *  F  L  F  H  Y  V  N  L  E  I  E  K  I  G  G  I  S  Q  L  V  V  V  F  I  I  L  V  H  C  L  P  F  S  T  T  S  S  V  S  F  V  P  *  E  F  H  F  Q  V  P  N  L  R  K  N  N  N  G  R  I  V  A  G  T  F  W  Y  F  R  L  C  *  H  C  S  *  S  I  T  R  H  R  T  F  S  K  R  H  Y  L  R  R  R  Q  P  F  D  R  K  S  D  G  V  R  Q  G  K  R  L  S  V  N  D  E  D  L  R  Q  L  *  G  G  S  G  *  S  G  S  G  C  R  L  C  S  S  S  D  E  P  A  C  E  V  G  R  V  G  S  P  E  E  E  T  C  F  A  G  K  A  C  C  V  K  R  E  G  A  G  Y  D  T  G  G  V  *  I  E  W  G  A  V  H  G  C  Y  Y  V  D  A  S  S  A  Y  C  *  D  E  R  V  P  L  *  F  S  A  F  W  T  T  Q  I   : D  T  *  H  V  F  L  S  W  *  R  G  V  S  *  E  *  H  S  R  E  V  R  S  *  C  S  W  C  S  R  *  C  W  L  V  *  Y  S  G  N  L  V  D  *  *  L  *  I  A  K  N  S  N  S  S  G  *  S  R  I  *  *  S  W  S  Y  P  I  L  W  R  F  F  E  L  E  R  R  K  G  S  N  F  L  L  F  I  F  S  *  Y  G  H  G  H  R  C  Y  W  I  Q  R  K  F  A  G  P  *  L  C  N  S  I  S  R  K  C  C  S  V  L  H  C  G  R  F  V  F  W  *  T  C  *  I  N  S  S  C  T  *  *  A  S  S  Q  Y  R  S  S  S  R  G  S  D  G  N  G  V  F  K  P  G  W  K  Y  Q  R  G  R  F  *  T  *  E  E  V  A  N  D  *  *  K  D  T  T  C  G  G  C  C  Q  G  I  N  *  E  R  F  R  A  R  *  D  H  L  L  V  G  I  *  L  S  F  L  *  N  L  N  A  M  C  C  C  N  *  M  L  Y  F  *  I  R  L  V  S  :  K  S  R  R  R  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67011" stop="67487"/>
                    <exon start="68191" stop="68811"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKTIMAESSPVRFGILGCANIARKVSRAIALSPNATISAVGSRSIEKATAYAKENGYPSTTKIYGSYEAVLDDPEVDAVYVPLPTSLHVKWAVLAAQKKKHVLLEKPVALNVKELDMILEGCESNGVQYMDATMWMHHPRTAKMKEFLSDSQRFGQLKSIHSTFSYLGDAEFLENDIRVKSDLDALGALGDAGWYSIRAILWTNDYELPKTVTALGDPEFNEAGVILSCGASLSWKDGRVATFYCSFLANMAMDIVAIGSKGNLRVHDFVIPFQENVAPFYTVEGSCFGELARSIHPAPSEHQVNTDLPQEALMVTEFSNLVGSIKGEGSKPEKKWPTISRKTQLVVDAVKASIEKGFEPVEIIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="74877" PGL_stop="71152"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74877" e_stop="74567"/>
            <exon e_start="73557" e_stop="73109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74877" e_stop="74567" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="74566" i_stop="73558" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="73557" e_stop="73109" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74877" stop="74567"/>
              <exon start="73557" stop="73187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74863" stop="74567"/>
              <exon start="73557" stop="73109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74862" stop="74567"/>
              <exon start="73557" stop="73174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTATTTATTTCTTGGAAGCAAGAAATAAAATGAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAGAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGGCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTG : GTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAGATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTACATTTTGTGTGATTATTTAATGGCCAATTGTGTCCATATGGTCTTTACTAATATTTACTTTTAAAAGAATAATTCTTGAATTTC</gDNA_template>
            <first_frame> L  Y  L  F  L  G  S  K  K  *  N  E  L  K  W  K  N  K  K  N  L  L  F  E  E  K  K  Y  *  Y  G  I  I  N  R  T  M  V  G  W  W  W  T  K  *  R  Y  G  F  C  K  P  I  F  I  *  C  I  G  P  G  L  W  W  *  I  G  L  W  *  W  I  G  L  *  E  *  *  N  F  C  F  G  P  C  *  C  R  L  A  *  N  *  S  S  S  C  F  S  C  *  Y  S  W :   C  E  E  G  R  F  K  G  S  A  R  R  *  H  I  G  D  *  R  *  K  S  K  R  G  R  K  R  R  *  Q  V  A  P  R  G  A  *  T  W  Q  F  L  Q  K  I  P  A  T  G  K  C  Q  R  G  R  Y  K  L  W  A  *  K  R  S  F  N  S  E  C  T  Q  K  R  N  T  A  G  S  K  K  C  *  G  Y  K  H  N  L  V  F  A  P  V  N  I  V  C  V  Y  *  G  F  *  I  S  G  S  L  V  C  T  N  *  K  Y  Q  I  V  F  F  T  F  C  V  I  I  *  W  P  I  V  S  I  W  S  L  L  I  F  T  F  K  R  I  I  L  E  F  </first_frame>
            <second_frame>  C  I  Y  F  L  E  A  R  N  K  M  N  *  S  G  K  I  R  K  I  C  Y  L  K  K  K  N  I  N  M  A  S  S  I  G  P  W  L  G  G  G  G  R  S  R  D  M  D  F  V  S  P  F  S  S  D  V  L  G  L  G  F  G  G  E  L  G  F  G  N  G  L  G  F  R  N  D  E  I  S  A  L  A  H  A  S  V  D  W  R  E  T  D  Q  A  H  V  F  L  V  D  I  P   : G  V  K  K  E  D  L  K  V  Q  L  E  D  N  I  L  E  I  S  G  E  R  V  K  E  E  E  K  G  D  D  K  W  H  R  V  E  R  K  R  G  S  F  C  R  K  F  R  L  P  E  N  A  N  V  E  G  I  S  C  G  L  E  N  G  V  L  T  V  N  V  P  K  K  E  T  Q  Q  V  P  K  N  V  K  A  I  N  I  T  *  F  L  R  L  *  I  *  Y  V  C  I  K  A  F  K  *  V  D  H  L  Y  V  Q  I  K  N  I  K  *  Y  F  L  H  F  V  *  L  F  N  G  Q  L  C  P  Y  G  L  Y  *  Y  L  L  L  K  E  *  F  L  N  F </second_frame>
            <third_frame>   V  F  I  S  W  K  Q  E  I  K  *  I  E  V  E  K  *  E  K  F  V  I  *  R  K  K  I  L  I  W  H  H  Q  *  D  H  G  W  V  V  V  D  E  V  E  I  W  I  L  *  A  H  F  H  L  M  Y  W  A  W  A  L  V  V  N  W  A  L  V  M  D  W  A  L  G  M  M  K  F  L  L  W  P  M  L  V  S  T  G  V  K  L  I  K  L  M  F  F  L  L  I  F  L  :  V  *  R  R  K  I  *  R  F  S  S  K  I  T  Y  W  R  L  A  V  K  E  *  K  R  K  K  K  A  M  T  S  G  T  A  W  S  V  N  V  A  V  S  A  E  N  S  G  Y  R  K  M  P  T  W  K  V  *  V  V  G  L  K  T  E  F  *  Q  *  M  Y  P  K  K  K  H  S  R  F  Q  K  M  L  R  L  *  T  *  L  S  F  C  A  C  E  Y  S  M  C  V  L  R  L  L  N  K  W  I  T  C  M  Y  K  L  K  I  S  N  S  I  F  Y  I  L  C  D  Y  L  M  A  N  C  V  H  M  V  F  T  N  I  Y  F  *  K  N  N  S  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74837" stop="74567"/>
                    <exon start="73557" stop="73289"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGKIRKICYLKKKNINMASSIGPWLGGGGRSRDMDFVSPFSSDVLGLGFGGELGFGNGLGFRNDEISALAHASVDWRETDQAHVFLVDIPGVKKEDLKVQLEDNILEISGERVKEEEKGDDKWHRVERKRGSFCRKFRLPENANVEGISCGLENGVLTVNVPKKETQQVPKNVKAINIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74877" e_stop="74567"/>
            <exon e_start="73557" e_stop="73178"/>
            <exon e_start="71288" e_stop="71243"/>
            <exon e_start="71182" e_stop="71152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.364" e_score="0.997"/>
          <exon-intron don_prob="0.944" acc_prob="0.375" e_score="0.630"/>
          <exon-only e_score="0.484"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74877" e_stop="74567" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="74566" i_stop="73558" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="73557" e_stop="73178" e_length="380"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.364">
            <gDNA_intron_boundary i_start="73177" i_stop="71289" i_length="1889"/>
          </intron>
          <exon e_serial="3" e_score="0.630">
            <gDNA_exon_boundary e_start="71288" e_stop="71243" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.375">
            <gDNA_intron_boundary i_start="71242" i_stop="71183" i_length="60"/>
          </intron>
          <exon e_serial="4" e_score="0.484">
            <gDNA_exon_boundary e_start="71182" e_stop="71152" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74877" stop="74567"/>
              <exon start="73557" stop="73187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74857" stop="74567"/>
              <exon start="73557" stop="73178"/>
              <exon start="71288" stop="71243"/>
              <exon start="71182" stop="71152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721977" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTATTTATTTCTTGGAAGCAAGAAATAAAATGAATTGAAGTGGAAAAATAAGAAAAATTTGTTATTTGAAGAAAAAAAATATTAATATGGCATCATCAATAGGACCATGGTTGGGTGGTGGTGGACGAAGTAGAGATATGGATTTTGTAAGCCCATTTTCATCTGATGTATTGGGCCTGGGCTTTGGTGGTGAATTGGGCTTTGGTAATGGATTGGGCTTTAGGAATGATGAAATTTCTGCTTTGGCCCATGCTAGTGTCGACTGGCGTGAAACTGATCAAGCTCATGTTTTTCTTGTTGATATTCCTG : GTGTGAAGAAGGAAGATTTAAAGGTTCAGCTCGAAGATAACATATTGGAGATTAGCGGTGAAAGAGTAAAAGAGGAAGAAAAAGGCGATGACAAGTGGCACCGCGTGGAGCGTAAACGTGGCAGTTTCTGCAGAAAATTCCGGCTACCGGAAAATGCCAACGTGGAAGGTATAAGTTGTGGGCTTGAAAACGGAGTTTTAACAGTGAATGTACCCAAAAAAGAAACACAGCAGGTTCCAAAAAATGTTAAGGCTATAAACATAACTTAGTTTTTGCGCCTGTGAATATAGTATGTGTGTATTAAGGCTTTTAAATAAGTGGATCACTTGTATGTACAAATTAAAAATATCAAATAGTATTTTTTACATTTTGTGTGATTA : AGTTCGGAATCAAAAAAGCAAAAAAAAAATCAAAAATTTTAAAAAG : ATGAAATTGACGCCATTACTGAATTAAAAAA</gDNA_template>
            <first_frame> L  Y  L  F  L  G  S  K  K  *  N  E  L  K  W  K  N  K  K  N  L  L  F  E  E  K  K  Y  *  Y  G  I  I  N  R  T  M  V  G  W  W  W  T  K  *  R  Y  G  F  C  K  P  I  F  I  *  C  I  G  P  G  L  W  W  *  I  G  L  W  *  W  I  G  L  *  E  *  *  N  F  C  F  G  P  C  *  C  R  L  A  *  N  *  S  S  S  C  F  S  C  *  Y  S  W :   C  E  E  G  R  F  K  G  S  A  R  R  *  H  I  G  D  *  R  *  K  S  K  R  G  R  K  R  R  *  Q  V  A  P  R  G  A  *  T  W  Q  F  L  Q  K  I  P  A  T  G  K  C  Q  R  G  R  Y  K  L  W  A  *  K  R  S  F  N  S  E  C  T  Q  K  R  N  T  A  G  S  K  K  C  *  G  Y  K  H  N  L  V  F  A  P  V  N  I  V  C  V  Y  *  G  F  *  I  S  G  S  L  V  C  T  N  *  K  Y  Q  I  V  F  F  T  F  C  V  I   : K  F  G  I  K  K  A  K  K  K  S  K  I  L  K  R :   *  N  *  R  H  Y  *  I  K  K </first_frame>
            <second_frame>  C  I  Y  F  L  E  A  R  N  K  M  N  *  S  G  K  I  R  K  I  C  Y  L  K  K  K  N  I  N  M  A  S  S  I  G  P  W  L  G  G  G  G  R  S  R  D  M  D  F  V  S  P  F  S  S  D  V  L  G  L  G  F  G  G  E  L  G  F  G  N  G  L  G  F  R  N  D  E  I  S  A  L  A  H  A  S  V  D  W  R  E  T  D  Q  A  H  V  F  L  V  D  I  P   : G  V  K  K  E  D  L  K  V  Q  L  E  D  N  I  L  E  I  S  G  E  R  V  K  E  E  E  K  G  D  D  K  W  H  R  V  E  R  K  R  G  S  F  C  R  K  F  R  L  P  E  N  A  N  V  E  G  I  S  C  G  L  E  N  G  V  L  T  V  N  V  P  K  K  E  T  Q  Q  V  P  K  N  V  K  A  I  N  I  T  *  F  L  R  L  *  I  *  Y  V  C  I  K  A  F  K  *  V  D  H  L  Y  V  Q  I  K  N  I  K  *  Y  F  L  H  F  V  *  L  :  S  S  E  S  K  K  Q  K  K  N  Q  K  F  *  K   : D  E  I  D  A  I  T  E  L  K   </second_frame>
            <third_frame>   V  F  I  S  W  K  Q  E  I  K  *  I  E  V  E  K  *  E  K  F  V  I  *  R  K  K  I  L  I  W  H  H  Q  *  D  H  G  W  V  V  V  D  E  V  E  I  W  I  L  *  A  H  F  H  L  M  Y  W  A  W  A  L  V  V  N  W  A  L  V  M  D  W  A  L  G  M  M  K  F  L  L  W  P  M  L  V  S  T  G  V  K  L  I  K  L  M  F  F  L  L  I  F  L  :  V  *  R  R  K  I  *  R  F  S  S  K  I  T  Y  W  R  L  A  V  K  E  *  K  R  K  K  K  A  M  T  S  G  T  A  W  S  V  N  V  A  V  S  A  E  N  S  G  Y  R  K  M  P  T  W  K  V  *  V  V  G  L  K  T  E  F  *  Q  *  M  Y  P  K  K  K  H  S  R  F  Q  K  M  L  R  L  *  T  *  L  S  F  C  A  C  E  Y  S  M  C  V  L  R  L  L  N  K  W  I  T  C  M  Y  K  L  K  I  S  N  S  I  F  Y  I  L  C  D  * :   V  R  N  Q  K  S  K  K  K  I  K  N  F  K  K  :  M  K  L  T  P  L  L  N  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74837" stop="74567"/>
                    <exon start="73557" stop="73289"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGKIRKICYLKKKNINMASSIGPWLGGGGRSRDMDFVSPFSSDVLGLGFGGELGFGNGLGFRNDEISALAHASVDWRETDQAHVFLVDIPGVKKEDLKVQLEDNILEISGERVKEEEKGDDKWHRVERKRGSFCRKFRLPENANVEGISCGLENGVLTVNVPKKETQQVPKNVKAINIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="80699" PGL_stop="81333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80699" e_stop="81333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="80699" e_stop="81333" e_length="635"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80699" stop="81333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80699" stop="81248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449082" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTACATTTTTGTCTACTTGATCAGCTGTTGCTGGCCCAAGTGCTTGCGCTGTTCCCTTTTCAAATTCAGCAGTATATGAATATTCATTTGCATTTTCAGCAGCCAAATCATCTGGAGCTTCACTCTTCTGGAGGTCAAGGGAGACTTTGACTCTGTCTTTCCACCCCTCAAAGGCATCACCCACACTACGACAAGGGTTAGGTTGAATCCTTTGACGTGATGAATCAGCTGGAGGTAAAGGATTTTCAGGTTGATCACTGCCCAGCTTTTGTCCATTTGAAGAATCAGAAGCCATGATTTCAACCATAGAGGCATCAGGCAAACCTCTCATGGGAGCAAGGTCATGTTGAAGCCCACTAACATCAGATCCCTTCGCTTCAGGAGCAGCATCTTTTAAATTTGCTTGATTATATTCACCTCTAGGCTCAGATGCAGCAGTTGGGACATTATCACCCACAGATTGAGAAGTGTCCGATTGCAGCATCTCTCTATTTTCTGTTGTTGGTTCCTTTTTTGTGTCATTTGCAGGATCACCTTCTTCGCCAGCTCCTCCAGAACTTTCATCCAAATGCTCAGGGTCTGCCTCATCAAAAGTTGCATCTGAATCAGCTCTTTCATCTCCCTCATTTTCATC</gDNA_template>
            <first_frame> C  T  F  L  S  T  *  S  A  V  A  G  P  S  A  C  A  V  P  F  S  N  S  A  V  Y  E  Y  S  F  A  F  S  A  A  K  S  S  G  A  S  L  F  W  R  S  R  E  T  L  T  L  S  F  H  P  S  K  A  S  P  T  L  R  Q  G  L  G  *  I  L  *  R  D  E  S  A  G  G  K  G  F  S  G  *  S  L  P  S  F  C  P  F  E  E  S  E  A  M  I  S  T  I  E  A  S  G  K  P  L  M  G  A  R  S  C  *  S  P  L  T  S  D  P  F  A  S  G  A  A  S  F  K  F  A  *  L  Y  S  P  L  G  S  D  A  A  V  G  T  L  S  P  T  D  *  E  V  S  D  C  S  I  S  L  F  S  V  V  G  S  F  F  V  S  F  A  G  S  P  S  S  P  A  P  P  E  L  S  S  K  C  S  G  S  A  S  S  K  V  A  S  E  S  A  L  S  S  P  S  F  S   </first_frame>
            <second_frame>  V  H  F  C  L  L  D  Q  L  L  L  A  Q  V  L  A  L  F  P  F  Q  I  Q  Q  Y  M  N  I  H  L  H  F  Q  Q  P  N  H  L  E  L  H  S  S  G  G  Q  G  R  L  *  L  C  L  S  T  P  Q  R  H  H  P  H  Y  D  K  G  *  V  E  S  F  D  V  M  N  Q  L  E  V  K  D  F  Q  V  D  H  C  P  A  F  V  H  L  K  N  Q  K  P  *  F  Q  P  *  R  H  Q  A  N  L  S  W  E  Q  G  H  V  E  A  H  *  H  Q  I  P  S  L  Q  E  Q  H  L  L  N  L  L  D  Y  I  H  L  *  A  Q  M  Q  Q  L  G  H  Y  H  P  Q  I  E  K  C  P  I  A  A  S  L  Y  F  L  L  L  V  P  F  L  C  H  L  Q  D  H  L  L  R  Q  L  L  Q  N  F  H  P  N  A  Q  G  L  P  H  Q  K  L  H  L  N  Q  L  F  H  L  P  H  F  H  </second_frame>
            <third_frame>   Y  I  F  V  Y  L  I  S  C  C  W  P  K  C  L  R  C  S  L  F  K  F  S  S  I  *  I  F  I  C  I  F  S  S  Q  I  I  W  S  F  T  L  L  E  V  K  G  D  F  D  S  V  F  P  P  L  K  G  I  T  H  T  T  T  R  V  R  L  N  P  L  T  *  *  I  S  W  R  *  R  I  F  R  L  I  T  A  Q  L  L  S  I  *  R  I  R  S  H  D  F  N  H  R  G  I  R  Q  T  S  H  G  S  K  V  M  L  K  P  T  N  I  R  S  L  R  F  R  S  S  I  F  *  I  C  L  I  I  F  T  S  R  L  R  C  S  S  W  D  I  I  T  H  R  L  R  S  V  R  L  Q  H  L  S  I  F  C  C  W  F  L  F  C  V  I  C  R  I  T  F  F  A  S  S  S  R  T  F  I  Q  M  L  R  V  C  L  I  K  S  C  I  *  I  S  S  F  I  S  L  I  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81123" stop="81332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQMQQLGHYHPQIEKCPIAASLYFLLLVPFLCHLQDHLLRQLLQNFHPNAQGLPHQKLHLNQLFHLPHFH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81097" stop="81303"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICLIIFTSRLRCSSWDIITHRLRSVRLQHLSIFCCWFLFCVICRITFFASSSRTFIQMLRVCLIKSCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="104598" PGL_stop="101617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104598" e_stop="104509"/>
            <exon e_start="104431" e_stop="104366"/>
            <exon e_start="104252" e_stop="104088"/>
            <exon e_start="104000" e_stop="103808"/>
            <exon e_start="101841" e_stop="101617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="0.900"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="0.970"/>
          <exon-intron don_prob="0.973" acc_prob="0.995" e_score="0.958"/>
          <exon-intron don_prob="0.303" acc_prob="0.000" e_score="0.979"/>
          <exon-only e_score="0.893"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="104598" e_stop="104509" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="104508" i_stop="104432" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="104431" e_stop="104366" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104365" i_stop="104253" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="104252" e_stop="104088" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.995">
            <gDNA_intron_boundary i_start="104087" i_stop="104001" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="104000" e_stop="103808" e_length="193"/>
          </exon>
          <intron i_serial="4" don_prob="0.303" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103807" i_stop="101842" i_length="1966"/>
          </intron>
          <exon e_serial="5" e_score="0.893">
            <gDNA_exon_boundary e_start="101841" e_stop="101617" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104598" stop="104509"/>
              <exon start="104431" stop="104366"/>
              <exon start="104252" stop="104088"/>
              <exon start="104000" stop="103808"/>
              <exon start="101841" stop="101617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414838" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGACATCATGGACTTGTTTGGGTCTGATTTACCTGTGGAGGGTGATGAAGGGATGCAATTTGCGTGGTCTGATGGAATTCTTTTACAG : GCTTTAAAGCAGGGATCATGGGTGCTTTTGGATGAACTCAATCTTGCTTCACAGTCTGTCTTGGAG : GGGTTAAATGCTATTTTGGACCATCGGGCTGAGGTATTCATTCCAGAGTTAGGTCGTACTTTCAAGTGCCCACCTTCTTTCAGAGTTTTTGCTTGTCAGAATCCTTCAAATCAAGGTGGGGGACGGAAAGGTCTTCCAAAGTCCTTCCTCAACAGATTTATGAAG : GTTTATGTCGATGAGCTAGTTGAGGATGACTATCTTGCTATTTCTAGTTCGCTGTATCCAACAATTTCACGTTCTCTTCTCTCTAATCTGGTTTTATTTAATAAGAGATTACATGAAGAAATAATGTTGCTTCACAAATTTGCTCAAGAAGGATCCCCTTGGGAGTTCAATCTCCGAGATGTAATTCGTTCCT : CTTAACTTGGATTTAGCCCGGGAAATGTTGTTGTATGCTGCGAATTGGGTATTTGAACAGGCTACTGAAAGTGATTACAAGCTTTATCTTCTTTGGTTTTCCCATGTTGGTTCTCTGTTACAACAATATTCTTCATTCTTTAGTTTTTATTCCTCTATTCTGGCAAAGGAATTGGAACATCCAATATGGAATCAGATTTTTAGTTGTCGTCACGAGATTGTGTCT</gDNA_template>
            <first_frame> T  D  I  M  D  L  F  G  S  D  L  P  V  E  G  D  E  G  M  Q  F  A  W  S  D  G  I  L  L  Q  :  A  L  K  Q  G  S  W  V  L  L  D  E  L  N  L  A  S  Q  S  V  L  E  :  G  L  N  A  I  L  D  H  R  A  E  V  F  I  P  E  L  G  R  T  F  K  C  P  P  S  F  R  V  F  A  C  Q  N  P  S  N  Q  G  G  G  R  K  G  L  P  K  S  F  L  N  R  F  M  K  :  V  Y  V  D  E  L  V  E  D  D  Y  L  A  I  S  S  S  L  Y  P  T  I  S  R  S  L  L  S  N  L  V  L  F  N  K  R  L  H  E  E  I  M  L  L  H  K  F  A  Q  E  G  S  P  W  E  F  N  L  R  D  V  I  R  S   : S  *  L  G  F  S  P  G  N  V  V  V  C  C  E  L  G  I  *  T  G  Y  *  K  *  L  Q  A  L  S  S  L  V  F  P  C  W  F  S  V  T  T  I  F  F  I  L  *  F  L  F  L  Y  S  G  K  G  I  G  T  S  N  M  E  S  D  F  *  L  S  S  R  D  C  V  </first_frame>
            <second_frame>  R  T  S  W  T  C  L  G  L  I  Y  L  W  R  V  M  K  G  C  N  L  R  G  L  M  E  F  F  Y  R :   L  *  S  R  D  H  G  C  F  W  M  N  S  I  L  L  H  S  L  S  W  R :   G  *  M  L  F  W  T  I  G  L  R  Y  S  F  Q  S  *  V  V  L  S  S  A  H  L  L  S  E  F  L  L  V  R  I  L  Q  I  K  V  G  D  G  K  V  F  Q  S  P  S  S  T  D  L  *  R :   F  M  S  M  S  *  L  R  M  T  I  L  L  F  L  V  R  C  I  Q  Q  F  H  V  L  F  S  L  I  W  F  Y  L  I  R  D  Y  M  K  K  *  C  C  F  T  N  L  L  K  K  D  P  L  G  S  S  I  S  E  M  *  F  V  P  :  L  N  L  D  L  A  R  E  M  L  L  Y  A  A  N  W  V  F  E  Q  A  T  E  S  D  Y  K  L  Y  L  L  W  F  S  H  V  G  S  L  L  Q  Q  Y  S  S  F  F  S  F  Y  S  S  I  L  A  K  E  L  E  H  P  I  W  N  Q  I  F  S  C  R  H  E  I  V  S </second_frame>
            <third_frame>   G  H  H  G  L  V  W  V  *  F  T  C  G  G  *  *  R  D  A  I  C  V  V  *  W  N  S  F  T   : G  F  K  A  G  I  M  G  A  F  G  *  T  Q  S  C  F  T  V  C  L  G   : G  V  K  C  Y  F  G  P  S  G  *  G  I  H  S  R  V  R  S  Y  F  Q  V  P  T  F  F  Q  S  F  C  L  S  E  S  F  K  S  R  W  G  T  E  R  S  S  K  V  L  P  Q  Q  I  Y  E   : G  L  C  R  *  A  S  *  G  *  L  S  C  Y  F  *  F  A  V  S  N  N  F  T  F  S  S  L  *  S  G  F  I  *  *  E  I  T  *  R  N  N  V  A  S  Q  I  C  S  R  R  I  P  L  G  V  Q  S  P  R  C  N  S  F  L :   L  T  W  I  *  P  G  K  C  C  C  M  L  R  I  G  Y  L  N  R  L  L  K  V  I  T  S  F  I  F  F  G  F  P  M  L  V  L  C  Y  N  N  I  L  H  S  L  V  F  I  P  L  F  W  Q  R  N  W  N  I  Q  Y  G  I  R  F  L  V  V  V  T  R  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104598" stop="104509"/>
                    <exon start="104431" stop="104366"/>
                    <exon start="104252" stop="104088"/>
                    <exon start="104000" stop="103808"/>
                    <exon start="101841" stop="101837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TDIMDLFGSDLPVEGDEGMQFAWSDGILLQALKQGSWVLLDELNLASQSVLEGLNAILDHRAEVFIPELGRTFKCPPSFRVFACQNPSNQGGGRKGLPKSFLNRFMKVYVDELVEDDYLAISSSLYPTISRSLLSNLVLFNKRLHEEIMLLHKFAQEGSPWEFNLRDVIRSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103816" stop="103808"/>
                    <exon start="101841" stop="101617"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVPLNLDLAREMLLYAANWVFEQATESDYKLYLLWFSHVGSLLQQYSSFFSFYSSILAKELEHPIWNQIFSCRHEIVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102985" e_stop="102816"/>
            <exon e_start="102675" e_stop="102100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.965"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="102985" e_stop="102816" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="102815" i_stop="102676" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="102675" e_stop="102100" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102985" stop="102816"/>
              <exon start="102675" stop="102100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCTATGAAGGATTTGGATTCAACTCTTGCAATGATCAAGAAATTTGAAGAAGGTCACTCAAAAAGGACACATTCCTCGAAGTTTGAGTGGGTAACTGGCATGCTTGTAAAGGCTATAGAAAATGGAGAGTGGATAGTATTGGATAATGCAAATCTCTGTAACCCAACG : GTTCTTGACAGGATAAATTCTTTAGTTGAACAATCTGGATCCATCACCATAAATGAATGTGGAACAGTTGAAGGAAAGCCTGTAATTCTTCATCCACACCCTAAGTTTCGGATGTTTTTAACAGTTAACCCTCTAAATGGTGAAGTTTCACGTGCAATGAGAAATAGAGGGGTTGAAATTTTTATGATGGAGCCTGATTGGTTGTTTGATGACAAATGCACTGAAATTGAAATCGAGCTCGAGAATGCAAAGAGATACATCATTCTTTCTGGGGTACCTTCTGGTAAGTTAGTTGATTTGATGGCCAATGCCCACATGACTGCAAAGGTTGAAGGTGCACTGCTCAAAATTAGGATCACACTTCTTGAACTTGCACGCTGGGTGCAGTTGTTTCAGCAACTTCTTACAAACGGTAACCAGCTTTCATGGAGCTTGCAAACGAGTTGGCAGCATACATATGTTTCTTTATTTGGTGTTGATGGAGGCAAGAGTCTTGTTGATCAAGCGGGGTTTCCCATTTCTCTAATACCAAAGTTTCAGGACTTCAACTCCTCTCAAGCTGGCTTGTTATCTTTG</gDNA_template>
            <first_frame> G  L  *  R  I  W  I  Q  L  L  Q  *  S  R  N  L  K  K  V  T  Q  K  G  H  I  P  R  S  L  S  G  *  L  A  C  L  *  R  L  *  K  M  E  S  G  *  Y  W  I  M  Q  I  S  V  T  Q  R :   F  L  T  G  *  I  L  *  L  N  N  L  D  P  S  P  *  M  N  V  E  Q  L  K  E  S  L  *  F  F  I  H  T  L  S  F  G  C  F  *  Q  L  T  L  *  M  V  K  F  H  V  Q  *  E  I  E  G  L  K  F  L  *  W  S  L  I  G  C  L  M  T  N  A  L  K  L  K  S  S  S  R  M  Q  R  D  T  S  F  F  L  G  Y  L  L  V  S  *  L  I  *  W  P  M  P  T  *  L  Q  R  L  K  V  H  C  S  K  L  G  S  H  F  L  N  L  H  A  G  C  S  C  F  S  N  F  L  Q  T  V  T  S  F  H  G  A  C  K  R  V  G  S  I  H  M  F  L  Y  L  V  L  M  E  A  R  V  L  L  I  K  R  G  F  P  F  L  *  Y  Q  S  F  R  T  S  T  P  L  K  L  A  C  Y  L   </first_frame>
            <second_frame>  V  Y  E  G  F  G  F  N  S  C  N  D  Q  E  I  *  R  R  S  L  K  K  D  T  F  L  E  V  *  V  G  N  W  H  A  C  K  G  Y  R  K  W  R  V  D  S  I  G  *  C  K  S  L  *  P  N   : G  S  *  Q  D  K  F  F  S  *  T  I  W  I  H  H  H  K  *  M  W  N  S  *  R  K  A  C  N  S  S  S  T  P  *  V  S  D  V  F  N  S  *  P  S  K  W  *  S  F  T  C  N  E  K  *  R  G  *  N  F  Y  D  G  A  *  L  V  V  *  *  Q  M  H  *  N  *  N  R  A  R  E  C  K  E  I  H  H  S  F  W  G  T  F  W  *  V  S  *  F  D  G  Q  C  P  H  D  C  K  G  *  R  C  T  A  Q  N  *  D  H  T  S  *  T  C  T  L  G  A  V  V  S  A  T  S  Y  K  R  *  P  A  F  M  E  L  A  N  E  L  A  A  Y  I  C  F  F  I  W  C  *  W  R  Q  E  S  C  *  S  S  G  V  S  H  F  S  N  T  K  V  S  G  L  Q  L  L  S  S  W  L  V  I  F  </second_frame>
            <third_frame>   S  M  K  D  L  D  S  T  L  A  M  I  K  K  F  E  E  G  H  S  K  R  T  H  S  S  K  F  E  W  V  T  G  M  L  V  K  A  I  E  N  G  E  W  I  V  L  D  N  A  N  L  C  N  P  T  :  V  L  D  R  I  N  S  L  V  E  Q  S  G  S  I  T  I  N  E  C  G  T  V  E  G  K  P  V  I  L  H  P  H  P  K  F  R  M  F  L  T  V  N  P  L  N  G  E  V  S  R  A  M  R  N  R  G  V  E  I  F  M  M  E  P  D  W  L  F  D  D  K  C  T  E  I  E  I  E  L  E  N  A  K  R  Y  I  I  L  S  G  V  P  S  G  K  L  V  D  L  M  A  N  A  H  M  T  A  K  V  E  G  A  L  L  K  I  R  I  T  L  L  E  L  A  R  W  V  Q  L  F  Q  Q  L  L  T  N  G  N  Q  L  S  W  S  L  Q  T  S  W  Q  H  T  Y  V  S  L  F  G  V  D  G  G  K  S  L  V  D  Q  A  G  F  P  I  S  L  I  P  K  F  Q  D  F  N  S  S  Q  A  G  L  L  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102983" stop="102816"/>
                    <exon start="102675" stop="102100"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMKDLDSTLAMIKKFEEGHSKRTHSSKFEWVTGMLVKAIENGEWIVLDNANLCNPTVLDRINSLVEQSGSITINECGTVEGKPVILHPHPKFRMFLTVNPLNGEVSRAMRNRGVEIFMMEPDWLFDDKCTEIEIELENAKRYIILSGVPSGKLVDLMANAHMTAKVEGALLKIRITLLELARWVQLFQQLLTNGNQLSWSLQTSWQHTYVSLFGVDGGKSLVDQAGFPISLIPKFQDFNSSQAGLLSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="101643" PGL_stop="102462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101643" e_stop="102462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="101643" e_stop="102462" e_length="820"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101643" stop="102462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101643" stop="102212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401515" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTGATTCCATATTGGATGTTCCAATTCCTTTGCCAGAATAGAGGAATAAAAACTAAAGAATGAAGAATATTGTTGTAACAGAGAACCAACATGGGAAAACCAAAGAAGATAAAGCTTGTAATCACTTTCAGTAGCCTGTTCAAATACCCAATTCGCAGCATACAACAACATTTCCCGGGCTAAATCCAAGTTAAGTTCTTTTGCCCCGCCACAAACATCAGCTTGACAGCTTGCATTTTTAGGAAACATCAGGGCATGCAAGAGCCGTGTATCCATCACGAGTGAGCTAACGACAGAAGTAGGAGCCAGTGCATTACGTAATGCAGCAGAAGTTGAATAACAGGCAGTCTGAGCTCCCAGGAACTCGAGGTACATGCAATTTTGCCTTATACAAGTTTCTTTAGAATATATAAGATAGTCCCTCAATTTCAGGGGTGCAGGCCATCCCCCTGGCAAAGATAACAAGCCAGCTTGAGAGGAGTTGAAGTCCTGAAACTTTGGTATTAGAGAAATGGGAAACCCCGCTTGATCAACAAGACTCTTGCCTCCATCAACACCAAATAAAGAAACATATGTATGCTGCCAACTCGTTTGCAAGCTCCATGAAAGCTGGTTACCGTTTGTAAGAAGTTGCTGAAACAACTGCACCCAGCGTGCAAGTTCAAGAAGTGTGATCCTAATTTTGAGCAGTGCACCTTCAACCTTTGCAGTCATGTGGGCATTGGCCATCAAATCAACTAACTTACCAGAAGGTACCCCAGAAAGAATGATGTATCTCTTTGCATTCTCGAGCTCGATTTCAATTTCAGTGCATTT</gDNA_template>
            <first_frame> K  S  D  S  I  L  D  V  P  I  P  L  P  E  *  R  N  K  N  *  R  M  K  N  I  V  V  T  E  N  Q  H  G  K  T  K  E  D  K  A  C  N  H  F  Q  *  P  V  Q  I  P  N  S  Q  H  T  T  T  F  P  G  L  N  P  S  *  V  L  L  P  R  H  K  H  Q  L  D  S  L  H  F  *  E  T  S  G  H  A  R  A  V  Y  P  S  R  V  S  *  R  Q  K  *  E  P  V  H  Y  V  M  Q  Q  K  L  N  N  R  Q  S  E  L  P  G  T  R  G  T  C  N  F  A  L  Y  K  F  L  *  N  I  *  D  S  P  S  I  S  G  V  Q  A  I  P  L  A  K  I  T  S  Q  L  E  R  S  *  S  P  E  T  L  V  L  E  K  W  E  T  P  L  D  Q  Q  D  S  C  L  H  Q  H  Q  I  K  K  H  M  Y  A  A  N  S  F  A  S  S  M  K  A  G  Y  R  L  *  E  V  A  E  T  T  A  P  S  V  Q  V  Q  E  V  *  S  *  F  *  A  V  H  L  Q  P  L  Q  S  C  G  H  W  P  S  N  Q  L  T  Y  Q  K  V  P  Q  K  E  *  C  I  S  L  H  S  R  A  R  F  Q  F  Q  C  I  </first_frame>
            <second_frame>  N  L  I  P  Y  W  M  F  Q  F  L  C  Q  N  R  G  I  K  T  K  E  *  R  I  L  L  *  Q  R  T  N  M  G  K  P  K  K  I  K  L  V  I  T  F  S  S  L  F  K  Y  P  I  R  S  I  Q  Q  H  F  P  G  *  I  Q  V  K  F  F  C  P  A  T  N  I  S  L  T  A  C  I  F  R  K  H  Q  G  M  Q  E  P  C  I  H  H  E  *  A  N  D  R  S  R  S  Q  C  I  T  *  C  S  R  S  *  I  T  G  S  L  S  S  Q  E  L  E  V  H  A  I  L  P  Y  T  S  F  F  R  I  Y  K  I  V  P  Q  F  Q  G  C  R  P  S  P  W  Q  R  *  Q  A  S  L  R  G  V  E  V  L  K  L  W  Y  *  R  N  G  K  P  R  L  I  N  K  T  L  A  S  I  N  T  K  *  R  N  I  C  M  L  P  T  R  L  Q  A  P  *  K  L  V  T  V  C  K  K  L  L  K  Q  L  H  P  A  C  K  F  K  K  C  D  P  N  F  E  Q  C  T  F  N  L  C  S  H  V  G  I  G  H  Q  I  N  *  L  T  R  R  Y  P  R  K  N  D  V  S  L  C  I  L  E  L  D  F  N  F  S  A  F </second_frame>
            <third_frame>   I  *  F  H  I  G  C  S  N  S  F  A  R  I  E  E  *  K  L  K  N  E  E  Y  C  C  N  R  E  P  T  W  E  N  Q  R  R  *  S  L  *  S  L  S  V  A  C  S  N  T  Q  F  A  A  Y  N  N  I  S  R  A  K  S  K  L  S  S  F  A  P  P  Q  T  S  A  *  Q  L  A  F  L  G  N  I  R  A  C  K  S  R  V  S  I  T  S  E  L  T  T  E  V  G  A  S  A  L  R  N  A  A  E  V  E  *  Q  A  V  *  A  P  R  N  S  R  Y  M  Q  F  C  L  I  Q  V  S  L  E  Y  I  R  *  S  L  N  F  R  G  A  G  H  P  P  G  K  D  N  K  P  A  *  E  E  L  K  S  *  N  F  G  I  R  E  M  G  N  P  A  *  S  T  R  L  L  P  P  S  T  P  N  K  E  T  Y  V  C  C  Q  L  V  C  K  L  H  E  S  W  L  P  F  V  R  S  C  *  N  N  C  T  Q  R  A  S  S  R  S  V  I  L  I  L  S  S  A  P  S  T  F  A  V  M  W  A  L  A  I  K  S  T  N  L  P  E  G  T  P  E  R  M  M  Y  L  F  A  F  S  S  S  I  S  I  S  V  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0039E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 131 chains have been computed
$ 
$ memory statistics:
$ 326152 bytes spliced alignments in total
$ 73 spliced alignments have been stored
$ 4467 bytes was the average size of a spliced alignment
$ 23328 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1666 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 151 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:59:53
-->
