<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:28:02"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322063" ref_strand="+" ref_description="SGN-U322063        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein, similar to SP:P34909 General negative regulator of transcription subunit 4 {Saccharomyces cerevisiae}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) | chr3:16759159-16764818 REVERSE | Aliases: F9K21.210(evalue: 1e-32, score=137) genbank/nr: RNA-binding(evalue: 1e-32, score=144)">
      <seq>cttcattcaatgccatagaaagcagtgttatttcaaatattatgtcaaaggacttgaattcatgtgatgattcaatggccttgcgtcgtagttttgttggctcgtatggtgagtctgttgggaagcatggtgcttcctggaactctttgcacagcgaccaattagggttctcttttgtgaagcaagatgacttttccaggcaaggaggtgatttggagtcgtcttttagaaatattggtcagatatcaaagaattcgtccatccttcaggatttcggagaaaacaaggatcagtatgtgaacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgttctctttctggtagtcgtttagtaaatagttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgctggtgatatcgattttgttgaccctgccacatcagtctttggaaatggcaaaccaacaaatggttttgatatatcagccttggagatcgggtcagcttgtgtgccacagaggagagggtttgaagacgaagcaagaatctggcatcttatgcaacaaaaacctttagatcaagggaaattctctcaacgaattgcttctcaaacaccatccatgcatcagtcacgaaggcatcctagccatggcggagatgagtatcttggcctggatgatatatatggcttctcatcaaggatggtggatcaacaccaaagtttcaattcatcttcctattcacaatttccacagcagaagcttgcgacaaatgaccacatctttaatggcttccagcacaatagcttggacgatatccatcgtggtaatgaagtggacaacatgacacaacaccagtcaaatgattcattaggtttcaaaaaattctatgctggatatggagatgtgatgttccagacgccccggtctggcgatgtatacaccagagtatttgggatgtaacacacaagacactttactaaaatgaaattgtccccaactattttgtgttgtttgcagaaaattataaatatgttaccagttaattacacatacttgcctggtgttggctttttttcaagttgaggtgtggagggaattgagccaattatttgtttctcattttccaatcatccattagctgattaaaaaatcacatttatctcaaaaaaaaaagaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="138" stop="2693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="438" g_stop="755" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="756" i_stop="1331" i_length="576">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1332" g_stop="1442" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="429" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1443" i_stop="1578" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1579" g_stop="2392" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="1252" r_length="823" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1253" polyA_stop="1275"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-U322063" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1243</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="438" e_stop="755"/>
          <exon e_start="1332" e_stop="1442"/>
          <exon e_start="1579" e_stop="2392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCAATGCCATAGAAAGCAGTGTTATTTCAAATATTATGTCAAAGGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTTGCGACAAATGACCACATCTTTAATGGCTTCCAGCACAATAGCTTGGACGATATCCATCGTGGTAATGAAGTGGACAACATGACACAACACCAGTCAAATGATTCATTAGGTTTCAAAAAATTCTATGCTGGATATGGAGATGTGATGTTCCAGACGCCCCGGTCTGGCGATGTATACACCAGAGTATTTGGGATGTAACACACAAGACACTTTACTAAAATGAAATTGTCCCCAACTATTTTGTGTTGTTTGCAGAAAATTATAAATATGTTACCAGTTAATTACACATACTTGCCTGGTGTTGGCTTTTTTTCAAGTTGAGGTGT-----G----GAGCCAATTATTTGTTTCTCATTTTCCAATCATCCATTAGCTGATTAAAAAATCACATTTATCTC</genome_strand>
        <mrna_strand>CTTCATTCAATGCCATAGAAAGCAGTGTTATTTCAAATATTATGTCAAAGGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCAGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTTGCGACAAATGACCACATCTTTAATGGCTTCCAGCACAATAGCTTGGACGATATCCATCGTGGTAATGAAGTGGACAACATGACACAACACCAGTCAAATGATTCATTAGGTTTCAAAAAATTCTATGCTGGATATGGAGATGTGATGTTCCAGACGCCCCGGTCTGGCGATGTATACACCAGAGTATTTGGGATGTAACACACAAGACACTTTACTAAAATGAAATTGTCCCCAACTATTTTGTGTTGTTTGCAGAAAATTATAAATATGTTACCAGTTAATTACACATACTTGCCTGGTGTTGGCTTTTTTTCAAGTTGAGGTGTGGAGGGAATTGAGCCAATTATTTGTTTCTCATTTTCCAATCATCCATTAGCTGATTAAAAAATCACATTTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340122" ref_strand="-" ref_description="SGN-U340122        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | In2-1 protein, putative, similar to In2-1 protein, Zea mays, P49248 | chr3:20409695-20411282 REVERSE | Aliases: T15C9.60(evalue: 4e-07, score=51.6) genbank/nr: gi|37051105|dbj|BAC81649.1| glutathione S-transferase [Pisum sativum](evalue: 9e-06, score=53.1)">
      <seq>aaacgtgacccaaaggagcacctggagaactataaaagacgtttcttgtctcagctctgatgagcattacacagtatccacaattatgcaatgatcactgctgagttctgaacagtttatatgtgcagggggctgtctttttcattgtattagaatatgattaatctcagcagaaaattccacatatggaatatatagctgcacagtgaagttgtttccatatgatctatatataccttacagatttgagccgtataagcagcattagagtagactgtctacctcacaattcttcatgtgtggcccttttcctaaaccctactaaaaggggatgctttgtgcaccgggatgccctttagaaatatgcagctgcacagtaactatttctaatcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="8747" stop="7500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8447" g_stop="8400" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8399" i_stop="8161" i_length="239">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8160" g_stop="7799" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="410" r_length="362" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-U340122" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340122" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8447" e_stop="8400"/>
          <exon e_start="8160" e_stop="7799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTGACCCAAAGGAGCACCTGGAGAACTATAAAAGACGTTTCTTGGTATATTGCTTGTCTACTGTTTTTATTTTTGTTATTTCTAAGACAGTCACTCAACTAATAATGTATTATCTCAAAAGATCACTTCCTTTATTAAAAAAAAAAATAGTATCAAGAAAAAGGACGACATTTTTAGATAATAAGTAACTATTAAGTGAGTGACCATACAAAAATCTAACCCATTTTTATTTGGAAATTGTTTTATAACCATACCACCATTTCTTTCTCTTTCTTTGTTGCAGTCTCAGCTCTGATGAGCATTACACAGTATCCACAATTATGCAATGATCACTGCTGAGTTCTGAACAGTTTATATGTGCAGGGGGCTGTCTTTTTCATTGTATTAGAATATGATTAATCTCAGCAGAAAATTCCACATATGGAATATATAGCTGCACAGTGAAGTTGTTTCCATATGATCTATATATACCTTACAGATTTGAGCCGTATAAGCAGCATTAGAGTAGACTGTCTACCTCACAATTCTTCATGTGTGGCCCTTTTCCTAAACCCTACTAAAAGGGGATGCTTTGTGCACCGGGATGCCCTTTAGAAATATGCAGCTGCACAGTAACTATTTCTAATCATAAAACACCAGGAATAT</genome_strand>
        <mrna_strand>AAACGTGACCCAAAGGAGCACCTGGAGAACTATAAAAGACGTTTCTTG...............................................................................................................................................................................................................................................TCTCAGCTCTGATGAGCATTACACAGTATCCACAATTATGCAATGATCACTGCTGAGTTCTGAACAGTTTATATGTGCAGGGGGCTGTCTTTTTCATTGTATTAGAATATGATTAATCTCAGCAGAAAATTCCACATATGGAATATATAGCTGCACAGTGAAGTTGTTTCCATATGATCTATATATACCTTACAGATTTGAGCCGTATAAGCAGCATTAGAGTAGACTGTCTACCTCACAATTCTTCATGTGTGGCCCTTTTCCTAAACCCTACTAAAAGGGGATGCTTTGTGCACCGGGATGCCCTTTAGAAATATGCAGCTGCACAGTAACTATTTCTAATCATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324826" ref_strand="+" ref_description="SGN-U324826        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | In2-1 protein, putative, similar to In2-1 (Zea mays) EMBL:X58573 | chr5:630955-632581 FORWARD | Aliases: F9G14.90, F9G14_90(evalue: 1e-51, score=199) genbank/nr: IN2-1(evalue: 4e-55, score=217)">
      <seq>tagaaagaagaaaaacacagttctgccagagagaggggagagataaggagtacaacgcattaacgaaccaaatcaccaaaacctaaaggagaaaaatggcagcttcgagcattgggcatcagattcatattaatgtcaattctccaattcttcttcctttgagaaccaatttcagttcactctctttcactttctctaatgctagatacccattaaaatggaatcacattggttgccccaaaatttgtgctctaccagctgtttcaataattgcttctggaagttctagagagatgcttcctcctgcccttgattcctcttcagagccaccagcaatctttgatggaactccaaagctttatatctcttactcatgcccatatgcccaacgtacgtggattgctagaaattgtaaggcgctgcaggaagagattaagttggttcctattgatctaaagaacaggccagattggtataaggagaaggtttatccagcaaataaggtaccatcactggaacacaacaatgaagttaagggagagagtatggatctcattagatatattgacagtaactttgaagggccatcacttttccctgatgatccttccaagagagaattcgcagaagaattattctcctactttgactccttttacaaagctgtaatttcgtctttaaagggagacaaaataaatgatgccattgcagcatttgattccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="13447" stop="9480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13147" g_stop="12868" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12867" i_stop="12080" i_length="788">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12079" g_stop="12005" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="355" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12004" i_stop="11408" i_length="597">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11407" g_stop="11347" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="416" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11346" i_stop="11239" i_length="108">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11238" g_stop="11152" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="503" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11151" i_stop="10148" i_length="1004">
            <donor d_prob="0.292" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10147" g_stop="10049" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="602" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10048" i_stop="9974" i_length="75">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9973" g_stop="9871" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="705" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9870" i_stop="9801" i_length="70">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9800" g_stop="9780" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="726" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-U324826" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13147" e_stop="12868"/>
          <exon e_start="12079" e_stop="12005"/>
          <exon e_start="11407" e_stop="11347"/>
          <exon e_start="11238" e_stop="11152"/>
          <exon e_start="10147" e_stop="10049"/>
          <exon e_start="9973" e_stop="9871"/>
          <exon e_start="9800" e_stop="9780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAGAAGAAAAACACAGTTCTGCCAGAGAGAGGGGAGAGATAAGGAGTACAACGCATTAACGAACCAAATCACCAAAACCTAAAGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGGGTACTCTCTTTCTCTATTTTTTTTTAGCTATTTTCTGGAATTCTCGTGTTCTTATAGTTTTAAGGTGTGTTTGGTTGGTAAGATGCAAAATGTAATTCATGTAAAATATTTATCCGGAAAATAAGTTATTTTTTTACTTATTTTTGACATATCGTCGAAAACACCATCTATGTATTAAAACACATTTCAAATAATAAATTGTTTACTTTTATCATCTATCGCTTGCAAAAATGAAACAATTGATAGTTATTATGTGAAACTCGAAAAAGGATTACATTGAGTTAATTTTTTGATTTTTTTTTTACAAAAAAACTATTGAGTCCTTATCTTTTTTATGAAGGTTGGTAAGTGAACTAGAAAATATTGTTTCAAATGTAATCTAAAAAAATATTTGTTGTTTCCTTTATTTTGAGTTATCATATTATTTGTTGTTTGTTTATGTTATCTTCTCTGTTCTCTAGCTTCACAAGGTAGGAGTAAGGTTGCGTACATATTATGCTCTCCAGTCCCACTTATAGGATACATTTAGTATGTTGTTGTAATTTCTTCTACTCTGCTTTCTTACTTGTCTTCAAACATCGATCTCGGATGGTCACTCAACTAAGAGCTATCATCTCGGAAAATCACCTTCGTAGTTGAAGGAAAATTGAAATCAAGAACAAAAGAGACCTTTTGGGATAATATCTATTAGTTAAGTGATCATCTGTGAAATCACTCGATTCTAAAAGGCGCAACTTCTATTGGGTTCAACAGTTTTGGTTAGTTCTAACAATTCCTTGTTTGTTCAGAAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAAGTTAGTTGCTCTTTTACTTTTTTGTTTGTCTCAAATGTGATTGTTGCATTTCTATTCTTCTTCTTTGTATGATATGATATGGTTAAATACTTGAATTATATACAACTAAGTCACTTAACTATTCTTTTGTCATGTTAAAAGTAACTAACACCTACAATAATGAAGTCACTAAACATTATCCTCTATAAAGTACTAAAATTTATCCATTGAAGTGACTTTTGCTGATATAGTGCATAAAAATCTATGACTTTACTGTTATAATGGATAAAATTCTATGTCGGATATTATATGGTTAGTCCAAATATGGTTCCTGACCTTTATACACTACAACGATAATGTCTATTGTTTTGTCGCATTAAACTAGCTAATAATTGAACCTTCTCTGCTATAACATTAAAGTTGCTAAACATTATCCACTATGAAGTAAAACATACCCATCAAGGTGACTTTTTTGTTATGGCGGATACAGTTTTGTGATGACAGTTTTGTAACTTTACTTTTCTAGTTGGTAAAATTCAGTGAACATATGTGAAATCAGCCTGATAAATTAGTTTATCTCCCTTGTGATAGTCAATTTATTCATTTTCTTGGTTGAAGGCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAAATTGTAAGGTTTGTATGGAGCAACTATTGATCTAGAATTTGGTTAAATTTAGGGTGCACTCGAATTTTTCCAGTACCTATAAAGTTAGTTGATTTATATTCTTGTATGTGAATCAGGCGCTGCAGGAAGAGATTAAGTTGGTTCCTATTGATCTAAAGAACAGGCCAGATTGGTATAAGGAGAAGGTTTATCCAGCAAATAAGGTGAAAGTGACATTATTGTTTCAAATAAATGGTGACAGTTATTCAAAGGCAATATACATAAATACACTGTCAAACTTGGCCTCAACTGGAAAGTAAATGCTCCAACTTTGATTATGCACATCTAGGCACCTCAACTCGTTTCCATTGTGTCAGTTGAACACTCCAACTTACAAAATGGTCATCTAGACACCAAAATTTATTTTCCACGACAGCGTGGACAGTGTCCATGACACAGTGGGGACGAGTTAGAGTGTATAGCTGCCAGTTGAGACCAAGTTGAGGTGGCTACATGTGGTCTCTCAAAGTTGAAGTGCTTAATTATCAGCTAAGGCCAAGTTTGAGTATATGTTTTATGTGTTATGCCGTTATTCAAATGGTCTATAGTCTCTGCTTTCTTTGAAGTTCTGCAGTCCAGGCAGAAGGTTTATCCGTAATAGAGTTAAGCTGTTCTGCTTGTTGTTTTAGCACAGTAAATCTATAAACCAGCTTTATCAATTCCTAAATGATAAGTTGAAACCAATGATGTCTCTCTGTCCCTCTCATGTGTGTGTATTTGAGGTTCCCTTCTAATATATTTTTATCTGCGATCTAAGGGTTCGTCAATCATTTTGCTTACATATCGTGAACTTTAAAAATTCGCAGCAGCATAGGAACCACAGAACCCCCTACTAGTAAAAATGTCCCTTCTGTCCATATCTCTACTGATTCAGATGGCAAGGACCCGTTGTGGCTTTAGCCCGCTTCTTGTTACTAAAATGATTGTGTATTTATGTGTGTTTAGACTCTTCGAGTTTAATTAATTTCAAGTTGGTTAAACTGAAAGGCCCCAGAAAGAAAGTTTAGCTTATCTATGAACGATTTGATTGATTAAAGGTAAATGAGTCGATTTAGGTCTGCTAATTGACAGGTTTAGGTGGCAAAATGTACATATACTAGTTCATTGCATTACACTATGCTGTCACTTTGTTGTGCTACTCCGAGAACTTAATTCTTTTCTTTCACAGGTACCATCACTGGAACACAACAATGAAGTTAAGGGAGAGAGTATGGATCTCATTAGATATATTGACAGTAACTTTGAAGGGCCATCACTTTTCCCTGATGTAAGTTCTTGATAGGATTTCTTTTGAGATTTTCCTACTTTTCCCGTCTCTCAACTTGTGTGCTCGCTAATGTAGGATCCTTCCAAGAGAGAATTCGCAGAAGAATTATTCTCCTACTTTGACTCCTTTTACAAAGCTGTAATTTCGTCTTTAAAGGAAGACAAAATAAATGATGCCAGTAAGTTTCAACTCCTATATAATTTACATATTTGCTTTGCGGTAGAATCATAATAGACGAGTTGGTGTAGTTGCAGCATTTGATTCCATTG</genome_strand>
        <mrna_strand>TAGAAAGAAGAAAAACACAGTTCTGCCAGAGAGAGGGGAGAGATAAGGAGTACAACGCATTAACGAACCAAATCACCAAAACCTAAAGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAAATTGTAAG............................................................................................................GCGCTGCAGGAAGAGATTAAGTTGGTTCCTATTGATCTAAAGAACAGGCCAGATTGGTATAAGGAGAAGGTTTATCCAGCAAATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATCACTGGAACACAACAATGAAGTTAAGGGAGAGAGTATGGATCTCATTAGATATATTGACAGTAACTTTGAAGGGCCATCACTTTTCCCTGAT...........................................................................GATCCTTCCAAGAGAGAATTCGCAGAAGAATTATTCTCCTACTTTGACTCCTTTTACAAAGCTGTAATTTCGTCTTTAAAGGGAGACAAAATAAATGATGCCA......................................................................TTGCAGCATTTGATTCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317911" ref_strand="+" ref_description="SGN-U317911        Tomato 200607 #1 [19 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribosomal protein L10 family protein, ribosomal protein L10- Nicotiana tabacum, EMBL:AB010879 | chr5:4341267-4342098 FORWARD | Aliases: T6I14.40, T6I14_40(evalue: 4e-76, score=281) genbank/nr: chloroplast(evalue: 6e-96, score=353)">
      <seq>ttagcacaaaagataaggcaatccaattctcaagctatcatcaatggaggctgctctcttcagcttaccttcctcttcctctcactcttacccattttccgtgaaatcccacttcaacaatcccttcataatcccccattccagttctcacctcaaactcaaacccagaactctaactattcgttcagccattagcagaaccaagaaagaagaaacagtcgaaacagtgaagcaacagcttgaagattgttatctcttagctggaatcagttacaaggggttaacagttaagcaatttcaagatcttagggctcaactcccagaaacaacaaagcttcttgttgctaagaacacattggtacttaaagcaattgaagggacaaaatgggaagcattgaaaccatgtatgaagggaatgaatgcttggttatttgttcatagtgaagaaatcccagctgctttgaaaccttataggacttttctaagggagaagaaattggaagataatgattttactggtggggtttttgaagggaagttttatgggcctgatgagtttaaggtgcttgagaatttgcctacaagagctgagatttattcacagcttcttgggtctttgaaaggacctgcttcagctgttgttgggactattcaagctccagcaaggaatttggttatggttcttaaggcttatgtaaagaaattggaggaggaagaaggtggaagtcaataatttttgttgtaattcttggatatggtaagctaatactattgtctatttggatcaaaaaaaaaaaaaaaatttttctgagagatggaattttgtaaattttatgtttttggtagaatgaatttatccttggccaaatgttctaaatttgtgtcctcgtaattggcggataattatctggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="14669" stop="16179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14969" g_stop="15879" g_length="911"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="916" r_length="916" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-U317911" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14969" e_stop="15879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCACAAAAGATAAGGCAATCCAATTCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATC-----AATATTTGAAATTTTTCTGAGAGATGGAATTTTGTAAATTTTATGTTTTTGGTAGAATGAATTTATCCTTGGCCAATTGTTCTAAATTTGTGTCCTCGTATTTGGCGGATAATTATCTGGATTAC</genome_strand>
        <mrna_strand>TTAGCACAAAAGATAAGGCAATCCAATTCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCAAAAAAAAAAAAAAAATTTTTCTGAGAGATGGAATTTTGTAAATTTTATGTTTTTGGTAGAATGAATTTATCCTTGGCCAAATGTTCTAAATTTGTGTCCTCGTAATTGGCGGATAATTATCTGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318356" ref_strand="+" ref_description="SGN-U318356        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | tonneau family protein, similar to tonneau 1b (GI:11494367) (Arabidopsis thaliana) | chr3:20392485-20394764 FORWARD | Aliases: T15C9.7(evalue: 3e-93, score=338) genbank/nr: gi|77416943|gb|ABA81867.1| unknown [Solanum tuberosum] (evalue: 4e-110, score=400)">
      <seq>tcggcacgagcgaaacttgtcttctccgagaagagaagagaaaaaaagccattcgaatacagcagagaagcaaagagcgagcatttctgcttctatcaaactgtacgaagcctctcaaagcaacagcagcagcagaagaagaatctgaagaaatggacgattacactagagaaatgatggacctcaaaaccctcgttacacgaaccctagagaagaaaggcgttctcgctaagatccgagctgaacttagagcaagcgtttttgaggcaattgaagatgaggatagggtaattgagaaggatgaaaccttgccccctgcgctattgggtagctgcaatgatcaggcaaaacaactccataattcaccttcaggaaggttactaactgcacttgtatgtgaatatttggattgggctcaattaaaccacacatttaaggtgtatttgccagagtgtaacttgccaaaggagtcgtggaaatctgagctaaaagaatttagcagcaagaatgggtatgatcttaacaggaatggtgacagtgctccgttgcttttggatgttcttgaaggattcttgaaatacgagaacttctctcaagcaaagggtgctggatctctgtccaacactgaagctaggaatgttaggaagccttcttcatcttcagttgccgggggcttaccaccgttaggaaggccaggtcctgctgcccagtcatctgacagaagggcaggttcatctgtatccggatataggaaagatgaatacaactggagatatgaaaatgaagagctttcgcaagatgtaatgcttgcctcatctgccttagaaaaccttcaattggacagaaaagctcggaaccttgccacttcatggcggcatagaggtgatggcatttctgagaatgatggcaggatggaataagattgagattatatcatctcgaaatcactaattatatgggaattgatgatatccttcaacgtagaaatgcaatgttctaatgtacgctatgtatgatttaatacacaatattgcttgtagtaattcgtgtgtgcttctcattttcctgtagtaattcgtgtgtgcttctcaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="19721" stop="24756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20019" g_stop="20257" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21340" g_stop="21472" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="372" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22707" g_stop="22795" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="461" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22900" g_stop="23022" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="584" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23333" g_stop="23439" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="691" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23440" i_stop="23518" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23519" g_stop="23544" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="717" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23545" i_stop="23629" i_length="85">
            <donor d_prob="0.633" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23630" g_stop="23786" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="874" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23787" i_stop="24239" i_length="453">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24240" g_stop="24455" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="1090" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1091" polyA_stop="1106"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-U318356" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1090</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20019" e_stop="20257"/>
          <exon e_start="21340" e_stop="21472"/>
          <exon e_start="22707" e_stop="22795"/>
          <exon e_start="22900" e_stop="23022"/>
          <exon e_start="23333" e_stop="23439"/>
          <exon e_start="23519" e_stop="23544"/>
          <exon e_start="23630" e_stop="23786"/>
          <exon e_start="24240" e_stop="24455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCAAAAACGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGAGTAATTAACCCCTTTTCTCATCTACATTTTCATTTCTTTAATGTATTTGCTTATAATTTTTTTTTTTGGGACGTAGAATGATCTTAGGATCCGATCTGGTTGTTACATATCAATGCTTTGTGATATTTCTAGTTTTTAAGTGTTTGTTAATTGCGGTGTCTGAGCCAGCTTATGAGCTGCTTGAATCGTTTCAAGTATCAAGTAACTCAGCCAAATTATAAGATATAATAATCCAGGATAAAATGCAGGATTATTTTATAGTATGTTTAGTTGGAGGTATTAGGTAATGCTTGGATTGTTTATTCAACTATTTATACCTTAGTGATAATATAAGTTTATCTCATATACATGGTGGAATAACTTATAACGGCATAATTAATCTCGAGATAACTTGTTTCCAACCAAACGACTCATAAGTGTCTTAGTTTGATTGGGCACGAAGTTTACGAAGCAAGAGAGAATTTTGAATTATGTGGTTTTAACTTAGAAAGATGTATGTAGTACTTTTAAATTTTGTGTTCTTAAACGTGCTACGGAAGATGTTGGAATTGGAAAACTTACGTAGTACAGAAGGAGACTCTTTTCGAGACAAACCAAAAAGGAAGAAAGGCACATAAATTGAGACGGAGGGACAGAGGGAGTACTATTTTGCCGCCTTTGGAATTTGAACTTGAGACCTCATGGTTCTCAATGTGCAACTCTATATTATTTCAACGATAGTATGGATTTTAGAATCCATGAAAAGGATGTATTTGGAACTGTATTTTTATTTTATAAATAGCAACAACCAAGCACTAACACAATGCTCGTGATTAAATGATCAGGGATACCCCTATGCAAAAACAAAAAGAAAGGAACCCGTGTGTACACAAAGCCTATTCCTGTAGTGAACTGATCTAGTCTAGCATGTTGTTTTCATCCTTTAGCTACATAACTGTAGTAAAAACTAAAAACTGATGATCTCTAATTGTTGTGTCACGTTTGCTTCCTTTGAATTGGGTCATTCTTTTCTTGTTGTAGAATTGTATTCAGTATAAGATATTTTACAAATTTTACATATTTTATCGTGTGATGATTTGTAGGCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAGGTCATTTTCTATTTTTGTCCTTTTTGTTGGTCTTTTGCTTAAATCATTGCTAATTTTTGTGTTAAAGACGGAAGGAGACATACTTATCTTCTCTAGAACATTTTATCGACTTTGGTAATATATATCAGAAAGCTGAGTTGTTTTCATATAGTGCAGCAGACCGTCTATTAAAAGTTACAATCCGTTGTCTGGATTGACATTTGGTCGAACAACCTCTGGCAGCTCTTCGGACCTAGAAATTCTATCTTTTTTTAGGATCTCATTCTGTGAATCTCACTCCTGATATACCTAAGTCTAACTTGCAGATGGCTACACCTTTTACTTTCCCAACAAATATGTTACTTTCCTGTTTCAGATTCATTTAGTTTGTATTTTGTGATGAAATTGATATCCAAAACAAATTACATTCTCCAATATCAAATTTAATGTTTCCAAGACACTAAAAAGTCTTGGAGAAAAATACTAGAGAGTCTACATTTTTGCTTCCATGTCTGACCGGTAAAAAATCTTTGATTTATCTCGGGTAAACATACTGAAATGCAAATGTCTAGGAGCATGATAATAATACGTTTAGTACTTGACCATATATCTTTTCTCCTTAACTACTCAGCCCTAAATTAACTACTAAAGCCCTACATAGTCTAATATTTCAACTTTTAGCATTTTATGTCAGAGAACTAGTGAAATGTGTTCATTCCATCTTTTGGTGTTTCTTTCCCTTTTTTTGATTGCTTTTAAACACTATCTAAATCATGCTTAATATATATTCCCAAAACCTCCTTTTCCTTCACATTCTTAAGCCAAACTTATTACTATTCTTGGTTTACTCACTATTTGGCCCTCATTATATTGTCAATGCTCCAAATACCTAGCTGGGCGTGCGAGGGTGTGTGGAGTATTTCACATTGGTTGGGGGAATGGATTCTTATTATATGGTCTTGGCAACTCCATAAAGAATGTCCTATCTCAATATACAAAAAACATCATCATTTACAAAAAAATACTAAATTTTGAGGGCTATACCCCTTGAAGTAAAACTTCTCTTGTTACTTGAGAATTTTTTCAAAGGTACCTAGACATGTACCTCTTCTTGCAGTCCGTACATCTTGTGATCAATGCATCAACATAGTTGTGTTTTAGGTCTAAGAAGTGTTAAAATTTAATGCATCCTTGATCCTCGAATAGTGCATCACTTTGCTTATTCATTTTAACAGTTTGGTTGTTCTGTGTGCAGGAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTGGTAATCATGTACTGTGCTCTCCGGTGTGAATTTATAATACTTTTTCACAAAGTCTTGTCAATATTTAGTTCTAATTACAAAGAACCCATTGTGTGATTGTGCAGCCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAGGTTTGACACGTATAAACATTAGTTATTGATTGACATGTGTAAAGAAGTGTATCAATATGTAAAAATTGATATAAAAACTTAGTTGGTAGTAACTAATTGTTGTTCTGCTTCTTGGATCTGCAATGTTCTGGCTGTGTTGTTGCTGTTATTCCAGATGGTTGGAGGTGTTAATTTGTGTAAATGTTTTTATCATAGTATTTGCAAATAACAGCTTCCGCCTTCCTGTACTATGTGGGTGGGTCAGTATGCAAACTGTGTCCAGTAGAAATAATAGCAAGTATTGTTTCTAATTTTATTTTATTTTTTTCAGAACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCACCGTTAGGAAGGTTAACACATTAAATATTATCACTTATTTTACTTTTTCATTTGGATTTAAAATTGACTTGGAACCATTTTACCGCACAGGCCAGGTCCTGCTGCCCAGTCATCTGGTAAGTAATCTAGCTGACCCTCCTCCCCCCGTGCCCTGGCAGTTAATTCCCGTCGAATGAATTTCTGAAATTGTTGAGTTTCTAGACAGAAGGGCAGGTTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCGGTCAGTGTTTGAACTCTCAAAGGACTTAAATTACACATTTGGTTATAATGTTATTATCTATTGGCTTGCAATGAGTCCTCAGTTTTTGTGGATTATAGTGCCAAAAAAATCACGTCTTTTAAGTGCTCCTCTCCAAAAGACATTACTATGCTTGTAAAGTCCTCCCCTTTTATTTGATAGAGTAGATGTTTGTTACATCTACATGTCAAGGTAAGGGTAAAGAATCCGTACACTCTTACCATCTCATATAGAAATTTGTTGCATGAGTATCATGGGAAGTTCAAGTATATCATCGTGATAAGTGATTGCCAAGAACTGATGATAAGCTGCAGAAGTTCTTGAAAAACATGCATAGAGTAGTTTTTCCTTTTCTCGATGTCTCCGTTGTTTGTCATCCTTTAACTTACTGTCCAGCAAATTGAGTGGTTTCTCAACTTGTGTTGAAATTTGCAGGCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACGTAGAAATGCAATGTTCTAATGTACGCTATGTATGATTTAATACACAATATTGCTTGTAGTAATTCGTGTGTGCTTCTCATTTTCCTGTAGTAATTCGTGTGTGCTTCTC</genome_strand>
        <mrna_strand>TCGGCACGAGCGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTG........................................................................................................CCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG......................................................................................................................................................................................................................................................................................................................AACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCACCGTTAGGAAG...............................................................................GCCAGGTCCTGCTGCCCAGTCATCTG.....................................................................................ACAGAAGGGCAGGTTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACGTAGAAATGCAATGTTCTAATGTACGCTATGTATGATTTAATACACAATATTGCTTGTAGTAATTCGTGTGTGCTTCTCATTTTCCTGTAGTAATTCGTGTGTGCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319897" ref_strand="+" ref_description="SGN-U319897        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:4551991-4553053 REVERSE | Aliases: None(evalue: 2e-17, score=86.7) genbank/nr: gi|50932385|ref|XP_475720.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|46575961|gb|AAT01322.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 1e-17, score=93.2)">
      <seq>tgaagttcacctctaccgctgccgattaaatcactgtaattcaatttcttcacttaggttacgttttcatttttttgttcgatttcttgtttcttaatgaatgtgataatttctatcgattcgtgttacaaaatatttgtgttttgttgttgttgctttttttttttgtaagcttataaacaatatgatgttatgaattcgatatggtaatttgtgcgttgttgttgttcttgttattttcggaactgtttacttttacattcaaattgaatcactgtacgatcatatattgattctctacttgattaattgcaaggttttaagcaatctcacaataaaagaaacgaattgatccccagaatggcgttaacgaactttatactgacagttgcgggagtgagcgctgtggttttattgatgaggagcgatgttaaacagtctgcttccatcttcaagcgcaatgttcgtcaaattcgccattggcttgaggaagagtctgcttccgcggctaagggaatagagaaggcaaagccgaaggagatatctcagaaggacatccccaaagacgacaaacactagatttgactcatacttatcagatgccttgcgatttcccagctaccatttcagattttgttccataacatgtgactaatttagactccccattagtgtaagtatcctgttaaatatacttttaccatttttggtattggcaaaatgagctattttcacatactgtgtcaccatagagctttcaaaatactagtaattgacatgactgaactctcttgtaagttgtaataatcatgatctctcagattctcttgtatctttgaagctactaggtcaaataacatttgacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="38470" stop="35911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38170" g_stop="37659" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37658" i_stop="36567" i_length="1092">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36566" g_stop="36212" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="867" r_length="355" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="868" polyA_stop="877"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-U319897" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38170" e_stop="37659"/>
          <exon e_start="36566" e_stop="36212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTCACCTCTACCGCTGCCGATTAAATCACTGTAATTCAATTTCTTCACTTAGGTTACGTTTTCATTTTTTTGTTCGATTTCTTGTTTCTTAATGAATGTGATAATTTCTATCGATTCGTGTTACAAAATATTTGTGTTTTGTTGTTGTTGCTTTTTTTTTTTGTAAGCTTATAAACAATATGATGTTATGAATTCGATATGGTAATTTGTGCGTTGTTGTTGTTCTTGTTATTTTCGGAACTGTTTACTTTTACATTCAAATTGAATCACTGTACGATCATATATTGATTCTCTACTTGATTAATTGCAAGGTTTTAAGCAATCTCACAATAAAAGAAACGAATTGATCCCCAGAATGGCGTTAACGAACTTTATACTGACAGTTGCGGGAGTGAGCGCTGTGGTTTTATTGATGAGGAGCGATGTTAAACAGTCTGCTTCCATCTTCAAGCGCAATGTTCGTCAAATTCGCCATTGGCTTGAGGAAGAGTCTGCTTCCGCGGCTAAGTATGTCGTCTACTCGTCTTACTCTTCCCTGTTTCTAATCAAGCATTTGTTCGGTTCATTTTTTGTTATCTGGTTGAAGTTAGTCGTCTTGTGCTTATAGTTTGCATTTAGTCATCTCTGTTTGGATTGAAAAAGTTATCCGTTGATGAAGGGTAAGTGATAAGCAAGAGAACTGACCATATTCGTAGAATTATTCGTGTTATTGTACAAAGGTAGTTATCCGTTGATGAAGGGTAAGTGATAAGCAAGAGAATTGACCATATTCGTAGAATTAGTCGTGTTATTGTATAAAGGTAGTTATCCGTTGATGAAGGGTAAGTGATAAGCAAGAGAACTGACCATATTCGTAGAATTAGTCGTGTTAATGTACAAAGGTAGCAGTGTGAGAAGTAATTGACTCGCTTAACACTAATCAGTTCTAGGTAGAATCTTCTTGGTTCTGGTCTTACTGCTAATTTCCTCCATAAACTCGAAATTTGCCATATCTGCTATCGGTCTTTCACGCATTATACCTTTGGGTAGAAAGAAAGTACTCTGTTGAAGAGAAGAAAGGTCTCAAAATGGTTCGGTTCAGTTGTTCGTTCCACTCACACATTTAGCGTTCAGCCTCCTATGCTATGCTATTGGTATTACAGCTCGATAACTGGCCAATTAGTGTCCAAGCATAGAGAAAGTTATTGCCTCATTTTGCTAGTAAACATTGGATCTCGATATCTTCTGGTATACCATGAAGTTTGTATTATATGTTATATCCAAAAATAGTTTGGGAATATGATAGCAAAATTCAATGCATAATAACATGAAAGAATGTGTTTTATTCTATAGCTAGAAGCATAAGTCCCATAGAAAACTGTTTTATGAATTTTATTCTTGACATGTAAGTTCGACTTCAAAAACTCTTTCTCCTTGCACGTCTTTTTTTTTCATTAATCATTTCTTGTCTTCTCATGTATCTTAATCTTTGCTCATCTCATCATATTTGTTTCTCTTTATATTGAATCCTTCGCTTCTGCTTGTTTGGTTATTAGTTTGCAGTCGTCATTCTGTTTATGTGTAAGAGATACGCGTGACATGCCATTGATATTTTTGTAGGGGAATAGAGAAGGCAAAGCCGAAGGAGATATCTCAGAAGGACATCCCCAAAGACGACAAACACTAGATTTGACTCATACTTATCAGATGCCTTGCGATTTCCCAGCTACCATTTCAGATTTTGTTCCATAACATGTGACTAATTTAGACTCCCCATTAGTGTAAGTATCCTGTTAAATATACTTTTACCATTTTTGGTATTGGCAAAATGAGCTATTTTCACATACTGTGTCACCATAGAGCTTTCAAAATACTAGTAATTGACATGACTGAACTCTCTTGTAAGTTGTAATAATCATGATCTCTCAGATTCTCTTGTATCTTTGAAGCTACTAGGTCAAATAACATTTGACAC</genome_strand>
        <mrna_strand>TGAAGTTCACCTCTACCGCTGCCGATTAAATCACTGTAATTCAATTTCTTCACTTAGGTTACGTTTTCATTTTTTTGTTCGATTTCTTGTTTCTTAATGAATGTGATAATTTCTATCGATTCGTGTTACAAAATATTTGTGTTTTGTTGTTGTTGCTTTTTTTTTTTGTAAGCTTATAAACAATATGATGTTATGAATTCGATATGGTAATTTGTGCGTTGTTGTTGTTCTTGTTATTTTCGGAACTGTTTACTTTTACATTCAAATTGAATCACTGTACGATCATATATTGATTCTCTACTTGATTAATTGCAAGGTTTTAAGCAATCTCACAATAAAAGAAACGAATTGATCCCCAGAATGGCGTTAACGAACTTTATACTGACAGTTGCGGGAGTGAGCGCTGTGGTTTTATTGATGAGGAGCGATGTTAAACAGTCTGCTTCCATCTTCAAGCGCAATGTTCGTCAAATTCGCCATTGGCTTGAGGAAGAGTCTGCTTCCGCGGCTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATAGAGAAGGCAAAGCCGAAGGAGATATCTCAGAAGGACATCCCCAAAGACGACAAACACTAGATTTGACTCATACTTATCAGATGCCTTGCGATTTCCCAGCTACCATTTCAGATTTTGTTCCATAACATGTGACTAATTTAGACTCCCCATTAGTGTAAGTATCCTGTTAAATATACTTTTACCATTTTTGGTATTGGCAAAATGAGCTATTTTCACATACTGTGTCACCATAGAGCTTTCAAAATACTAGTAATTGACATGACTGAACTCTCTTGTAAGTTGTAATAATCATGATCTCTCAGATTCTCTTGTATCTTTGAAGCTACTAGGTCAAATAACATTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319208" ref_strand="+" ref_description="SGN-U319208        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphatidylglycerolphosphate synthase (PGS1), identical to phosphatidylglycerolphosphate synthase GI:13365519 from (Arabidopsis thaliana) | chr2:16414333-16416201 FORWARD | Aliases: T16B24.7, T16B24_7(evalue: 1e-75, score=279) genbank/nr: gi|15225064|ref|NP_181461.1| phosphatidylglycerolphosphate synthase (PGS1) [Arabidopsis thaliana] gi|7484841|pir||T02573 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase homolog At2g39290 - Arabidopsis thaliana gi|3402692|gb|AAC28995.1| putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Arabidopsis thaliana] gi|13365519|dbj|BAB39133.1| phosphatidylglycerolphosphate synthase [Arabidopsis thaliana] gi|15778125|dbj|BAB68508.1| phophoglycerolphosphate synthase [Arabidopsis thaliana](evalue: 1e-73, score=279)">
      <seq>aaagctgtggcctctatttatggccacatgccctacaatttctaccgcaccttctcctccaccgccgcgccaacaacaaatttaccggtggtgccgacacacatttaccgtagccggaggatctcaactccggcgccggcattctcgaaggtctcaattttttcctgtcaaggggagaaggaggagtatgcccctttttcagtgaggaatatttctaccactggcatgggctatacacctggtaataaggaggatcaccaccgggagaagacattgaggtcgtcgccgtcgtcatcagctccatcaaagtctgctaaactgctcacactgcctacaattttgacaatcggacgtgtagccgctattccggttctcgttaccacattctatgttgatagctggtggggaccaaccgctacaacatgtatatttattgctgcagcaataactgattggctagatggatatcttgctcgcaagatgaatttaggaactgcctttggtgcatttttagatccagtggctgataagctaatggttgctgccacattgatcttattgtgcaccaaacctttggaggctagtttgtttggacaatttccatggctactaactgtaccttctattgctataattggcagggagataactatgtctgcagttagagaatgggcggcttctcagggtggtaaactttcagaggctgttgctgtgaataacttggggaagtggaaaacagccactcagatgactgcattgaccatccttcttcttactagagatagcagtttatcaggggctggaacttttgtagcttctggtgtgatcttgctatatgtttcagcatggttagctgtatggtctctggtcgtatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="39609" stop="44039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39909" g_stop="40290" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41212" g_stop="41309" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="480" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41310" i_stop="41402" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41403" g_stop="41453" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="531" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41454" i_stop="41613" i_length="160">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41614" g_stop="41727" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="645" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41728" i_stop="43309" i_length="1582">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43310" g_stop="43366" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="702" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43455" g_stop="43540" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="788" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43649" g_stop="43739" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="879" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-U319208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39909" e_stop="40290"/>
          <exon e_start="41212" e_stop="41309"/>
          <exon e_start="41403" e_stop="41453"/>
          <exon e_start="41614" e_stop="41727"/>
          <exon e_start="43310" e_stop="43366"/>
          <exon e_start="43455" e_stop="43540"/>
          <exon e_start="43649" e_stop="43739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCAGTAAGTTTTTGGGGATACAATTAGTTTTGTTTAACCCTAGCTAATTGAGAGTGTGCAATGTGGTAAATATAGCTGTGATATCTGAAATTGGAATGTAATTGGAGGTGATTTTCTTCTTTTTTGGTGAGTTTCAATGTTTGTTAAGTTGATTAGTAGAATTGATTGATGCATTTAGATTGGTTCTCCGGGGATGTATGTATTCGTCTTGCAATAAAGTTACTCAATTTGACTTATCCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAATGATTGGTATAATGAGGCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAAGGATTGGTGTAATGAGTGGGAGAGGGTAAAGTCACTGGTTTTCTGCCGAAATTCCGTGTACTAAGAAAATTCAGTTACTTGTATCTTTATGCAATGGAACAATGGTTTGGAGGCTGGAATTAGTAAAAAGAGATCTTTTAGTTTTAATTTCCCTTTTGCTTGTTGAACTGCTAACTTGAGGAACATGGTGGCTGGTATATACTAATTAGAGACAAGAAACAGATGATACATTATGAGGAAACTGTCCTGGGTTCTGATATTAAGGCTGTATAAAACTTCTGAATATTTGAAAAAAGAGAGTAAGCGTTTCAGAGATCTGATGATTAACATAATTGTCTTGTTATTAGTCTATTGTATGCTTTTATGTAAGCTTTTCTAATGAGTTGCATATAGTTTGCTGATCTCTTTTATTACTTTAATCTCAGAAATTTTTGGATTTTAGTTTCGCTTGTTACCCTTTACACAGCCGTTAAGACAAATCAGGATGAGAGCATGAGTTTATTAGAATTTCATAACTTTTTCTATTTTCTTGGTTGGACAACATAAATTGTTTTCAGATGATACACTGTAAAAGAAAACTGATTTGTAGCCTTTTTAATATAGCATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAGGTGAGTGATTAACTGTACTTCTGTTCATAATTGCATTTCCTTTCGCATTGGCAGTGTTCTAAAGTGCCATAACGACGTGCTTTAGAGCATTATGGTTGCCAATTAAGATATCGTAAAACTTCCTTTGGATGACAGTCTGACAAGTGAGGGAGGATTTAGTGAAGGAACAATGCTGCTTTATACTAATATAGATTGCATTTCCTTTCATATGGTATTTTTTTTTTCAGAAATAGAACTTAAGTTTGTGATATTAATAGTCATGAGATCAGTAACTATGTTGTCATAGTTCTTTTCTCTTGTAGATCTGTAAACACCATAACGGACTTGCAGTTTTCATTTTCGACATGGTTTTTTTTGTTGCAGTACACCCGGGGAACATTTTGGATAATGAGTTTCTGAAAGAGTTTTTAAATTTCCAGAAGGTTTCACTAAGATTATATTTCTGTTAAATTCTATGGTACACTGGCCTTAGGGAAATAGAAGATGTTAGATGGGCCATGAAAACCGTAAGCATTGATGTGAAAACTTTTGATCCTTTTAACATTCTATTCACCCTATCAGTATACAATTATATTGCATGGGACTTCGGAGCACGTCTTTCGGTGGTCATTGGATCATTGTCCGCTGCACTTTTCAGTTTTTATTTTACTTGTTTTTCTGGTGGTTGGGGCGGAGTTGCAAGGGCCTGGAAGAATAAGAACTTAACTGGAAAATTCAAACCATATAGTAATTGGATCCATCGTGCATGTTAAATTTGATTTGCAATTTGAGCTTCTAGTATATTAGAAAGAAACTACAAATCTGTGTTACAAGGGAAATGAAAATGACATTTATCATGAGGTAAATTGTGTTAAGCAGTTAATAGTACTTTTCGTGTTTAACTGAATTATTATCTTAACTCTAGGTGCGCGAAAGCTGGCCTTGACACCACAATCCTCAAAATTTATTTTTATCTTAGTTCTAACATGTAGATTTTCCACGTATAAGTTTAGTTATTCAAAAGATATTATCTTTGCTATAGTTTTCCACATAGTGTGGGATTACAATCACAATATTTTTTCTAGAGTTCCCTGAAGCTATTATTCATATCCTTCTTTCTGAAATGTAATTTTAGTTAAAACTATTCCTCTTCATTTGTGTCAAGTAAGTATGAATATTTTAAGTAATGCTGCGAGGATAAACTTCTCTGAAACATGCAAGCAGTGATCAGCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCACAAATCAACCTATTATTATTTACTCTTAAGAGTAATCCACATCATGATTTAGTTATCCCAGTGTTAAATAATGAATTTTCCAGGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAGGTAACTTTCTGTTCTAAACTCGCGCTAATATTTGAAGGAAAAAGGGATGTTGATTGAAGAAGATTCATGTGAATGTTTCTTTGACCTTTGTAACTATCCTCTCTGCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATG</genome_strand>
        <mrna_strand>AAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAG.............................................................................................ATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAG................................................................................................................................................................CTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG........................................................................................GCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG............................................................................................................TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336759" ref_strand="+" ref_description="SGN-U336759        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphatidylglycerolphosphate synthase (PGS1), identical to phosphatidylglycerolphosphate synthase GI:13365519 from (Arabidopsis thaliana) | chr2:16414333-16416201 FORWARD | Aliases: T16B24.7, T16B24_7(evalue: 6e-20, score=95.1) genbank/nr: putative(evalue: 5e-18, score=95.1)">
      <seq>cctacaacaaatttaccggtggtgccgacacacatttaccgtagccggaggatctcaactccggcgccggcattctcgaaggtctcaattttttcctgtcaaggggagaaggaggagtatgcccctttttcagtgaggaatatttctaccactggcatgggctatacacctggtaataaggaggatcaccaccgggagaagacattgaggtcgtcgccgtcgtcatcagctccatcaaagtctgctaaactgctcacactgcctacaattttgacaatcggacgtgtagccgctattccggttctcgttaccacattctatgttgatagctggtggggaccaaccgctacaacatgtatatttattgctgcagcaataactgattggctagatggatatcttgctcgcaaggtacatgcttctgctgttcaatagaatcattttttctcgaattataatttcttatatttcaactttcaaaattggctggtttgacacgtccagatgaatttaggaactgcctttggtgcatttttagatccagtggctgataaggtattttctctttattcttcaattcacatggtattacctggaagtttggccagtttgctagtgttgctaccattatccataatgtttgagactcttcagcataattgcttgtaatgaaagagcagacattttttgatacaactcttcttgacttcaacagctaatggttgctgccacattgatcttattgtgcaccaaacctttggaggctagtttgtttggacaatttccatggctactaactgtaccttctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="39678" stop="42010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39978" g_stop="40290" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41212" g_stop="41710" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="812" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-U336759" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39978" e_stop="40290"/>
          <exon e_start="41212" e_stop="41710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCAGTAAGTTTTTGGGGATACAATTAGTTTTGTTTAACCCTAGCTAATTGAGAGTGTGCAATGTGGTAAATATAGCTGTGATATCTGAAATTGGAATGTAATTGGAGGTGATTTTCTTCTTTTTTGGTGAGTTTCAATGTTTGTTAAGTTGATTAGTAGAATTGATTGATGCATTTAGATTGGTTCTCCGGGGATGTATGTATTCGTCTTGCAATAAAGTTACTCAATTTGACTTATCCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAATGATTGGTATAATGAGGCAGAAAAAGGAAGTTGCTCAATTTGGTGTGAAAGGATTGGTGTAATGAGTGGGAGAGGGTAAAGTCACTGGTTTTCTGCCGAAATTCCGTGTACTAAGAAAATTCAGTTACTTGTATCTTTATGCAATGGAACAATGGTTTGGAGGCTGGAATTAGTAAAAAGAGATCTTTTAGTTTTAATTTCCCTTTTGCTTGTTGAACTGCTAACTTGAGGAACATGGTGGCTGGTATATACTAATTAGAGACAAGAAACAGATGATACATTATGAGGAAACTGTCCTGGGTTCTGATATTAAGGCTGTATAAAACTTCTGAATATTTGAAAAAAGAGAGTAAGCGTTTCAGAGATCTGATGATTAACATAATTGTCTTGTTATTAGTCTATTGTATGCTTTTATGTAAGCTTTTCTAATGAGTTGCATATAGTTTGCTGATCTCTTTTATTACTTTAATCTCAGAAATTTTTGGATTTTAGTTTCGCTTGTTACCCTTTACACAGCCGTTAAGACAAATCAGGATGAGAGCATGAGTTTATTAGAATTTCATAACTTTTTCTATTTTCTTGGTTGGACAACATAAATTGTTTTCAGATGATACACTGTAAAAGAAAACTGATTTGTAGCCTTTTTAATATAGCATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTG</genome_strand>
        <mrna_strand>CCTACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319207" ref_strand="+" ref_description="SGN-U319207        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphatidylglycerolphosphate synthase (PGS1), identical to phosphatidylglycerolphosphate synthase GI:13365519 from (Arabidopsis thaliana) | chr2:16414333-16416201 FORWARD | Aliases: T16B24.7, T16B24_7(evalue: 3e-28, score=122) genbank/nr: putative(evalue: 8e-27, score=124)">
      <seq>gcttagattgaaaagaaagaggaattcgagagctcttgagaacatggattggaactgtgggtactcttgatgaaccttattgttcacttgatttttttcgattattaagttttgcatagtatgtagtctttctgatagtctgtgagatcatagtgtccatatttagcctggtagtcgcttttgctcaaggtgcgatatctttttttccaatatgatatttatgatatgacactctttggtacctttttcaaatatacatcatatgatgctcttccatgttcctcgaaaatcttttccctgcatcattagttattttcattgtggatgagtgataaacactgttttttgattcattttgcaaatctttttgtagataactatgtctgcagttagagaatgggcggcttctcagggtggtaaactttcagaggctgttgctgtgaataacttggggaagtggaaaacagccactcagatgactgcattgaccatccttcttcttactagagatagcagtttatcaggggctggaacttttgtagcttctggtgtgatcttgctatatgtttcagcatggttagctgtatggtctctggtcgtatatatgagaaagatatcgaaagtattgttgatgtagaaatcatggccaatgatcactcacattttggctcattctactagctgtggagaagcaggttgtacacaagctgatccatgattctgcaaaaggaaactgccctttgcagttgcatctcgactacgagggaagttgctaacttaattctgacatgcctcgccccatatttatcccgtgtactttggttgtgacagagagaaatgaaaaatgctggctgtgttcaacgtttgcttttccacttcattctttaaccatattctttagtgaaattggaggctcaataggaatattactatatcattaaatacatggaatttgcgatatctattgtaatcgattctgataggaaaaatttatactcaaatatcgttccggttgaaccggactgatcgatggctccttcggatcaatattgctatacacattgcagtaactgtttgtcatgcaataaattatgcacgaggtgtttgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="42637" stop="44547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42937" g_stop="43366" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43455" g_stop="43540" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="516" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43649" g_stop="44247" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="1115" r_length="599" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1116" polyA_stop="1161"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-U319207" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1115</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42937" e_stop="43366"/>
          <exon e_start="43455" e_stop="43540"/>
          <exon e_start="43649" e_stop="44247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCACAAATCAACCTATTATTATTTACTCTTAAGAGTAATCCACATCATGATTTAGTTATCCCAGTGTTAAATAATGAATTTTCCAGGCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAGGTAACTTTCTGTTCTAAACTCGCGCTAATATTTGAAGGAAAAAGGGATGTTGATTGAAGAAGATTCATGTGAATGTTTCTTTGACCTTTGTAACTATCCTCTCTGCAGTTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGAAACTGCCCTTTGCAGTTGCATCTCGACTACGAGGGAAGTTGCTAACTTAATTCTGACATGCCTCGCCCCATATTTATCCCGTGTACTTTGGTTGTGACAGAGAGAAATGAAAAATGCTGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTCTTTAACCATATTCTTTAGTGAAATTGGAGGCTCAATAGGAATATTACTATATCATTAAATACATGGAATTTGCGATATCTATTGTAATCGATTCTGATAGGAAAAATTTATACTCAAATATCGTTCCGGTTGAACCGGACTGATCGATGGCTCCTTCGGATCAATATTGCTATACACATTGCAGTAACTGTTTGTCATGCAATAAATTATGCACGAGGTGTTTGTTTACAGA</genome_strand>
        <mrna_strand>GCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG........................................................................................GCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG............................................................................................................TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGAAACTGCCCTTTGCAGTTGCATCTCGACTACGAGGGAAGTTGCTAACTTAATTCTGACATGCCTCGCCCCATATTTATCCCGTGTACTTTGGTTGTGACAGAGAGAAATGAAAAATGCTGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTCTTTAACCATATTCTTTAGTGAAATTGGAGGCTCAATAGGAATATTACTATATCATTAAATACATGGAATTTGCGATATCTATTGTAATCGATTCTGATAGGAAAAATTTATACTCAAATATCGTTCCGGTTGAACCGGACTGATCGATGGCTCCTTCGGATCAATATTGCTATACACATTGCAGTAACTGTTTGTCATGCAATAAATTATGCACGAGGTGTTTGTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346657" ref_strand="+" ref_description="SGN-U346657        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ccgtaacgaatatttctccggtggagactgcattggatttggctttaacagaaagtgcttttgcactaaggcttgttaattaattaattaattaattaattagtgtcatgaaaatgacactaaattaatttaattaattagttcattaatccatctctaagttagttttgttttaggcaataataaaatgtagtagtgttttttttcttttctaaagggcattatgcccttcagggttgtagtctttcttcgaaatctgtgtgaacatgaggtgttttgtgcatcgattgattagtaattcaagggttctttctttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="48118" stop="49036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48418" g_stop="48736" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="320" polyA_stop="331"/>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-U346657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48418" e_stop="48736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAACGAATATTTCTCCGGTGGAGACTGCATTGGATTTGGCTTTAACAGAAAGTGCTTTTGCACTAAGGCTTGTTAATTAATTAATTAATTAATTAATTAGTGTCATGAAAATGACACTAAATTAATTTAATTAATTAGTTCATTAATCCATCTCTAAGTTAGTTTTGTTTTAGGCAATAATAAAATGTAGTAGTGTTTTTTTTCTTTTCTAAAGGGCATTATGCCCTTCAGGGTTGTAGTCTTTCTTCGAAATCTGTGTGAACATGAGGTGTTTTGTGCATCGATTGATTAGTAATTCAAGGGTTCTTTCTTTCTT</genome_strand>
        <mrna_strand>CCGTAACGAATATTTCTCCGGTGGAGACTGCATTGGATTTGGCTTTAACAGAAAGTGCTTTTGCACTAAGGCTTGTTAATTAATTAATTAATTAATTAATTAGTGTCATGAAAATGACACTAAATTAATTTAATTAATTAGTTCATTAATCCATCTCTAAGTTAGTTTTGTTTTAGGCAATAATAAAATGTAGTAGTGTTTTTTTTCTTTTCTAAAGGGCATTATGCCCTTCAGGGTTGTAGTCTTTCTTCGAAATCTGTGTGAACATGAGGTGTTTTGTGCATCGATTGATTAGTAATTCAAGGGTTCTTTCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313393" ref_strand="+" ref_description="SGN-U313393        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: EMB1144 | chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative, similar to chorismate synthase from Lycopersicon esculentum (SP:Q42884), Corydalis sempervirens (SP:P27793); contains Pfam chorismate synthase domain PF01264 | chr1:18068314-18071758 REVERSE | Aliases: T24P22.3, T24P22_3, EMB1144, EMBRYO DEFECTIVE 1144(evalue: 3e-175, score=612) genbank/nr: gi|410484|emb|CAA79854.1| chorismate synthase 2 [Lycopersicon esculentum] >gi|2492953|sp|Q42885|AROC2_LYCES Chorismate synthase 2, chloroplast precursor (5-enolpyruvylshikimate-3-phosphate phospholyase 2) (evalue: 0, score=735)">
      <seq>atcacagcccaaacgactagagatacaagctgctggtaatacatttggaaattatttccgcgttacaacgtttggagaatctcacggtggtggtgtcggttgtataattgatggatgtccccctcgactcccactctcagagtcggatatgcaagtggaacttgacaggaggaggccaggtcaaagccgaattaccacaccaagaaaagagactgatacttgcaaaatatcatcaggcactgctgatggtttgactacgggatctccaatcaaagttgaagtacccaacactgaccagagaggaaatgactatagtgaaatgtcccttgcttataggccatctcatgctgatgcaacttatgacttcaagtatggagttagatcagtacaggggggaggtagatcctcagcaagagaaaccatcgggagagtcgctgctggagctgttgccaagaaaattctcaaactttattcaggaactgagatccttgcttatgtttcacaagttcacaatgttgtacttccagaggatttagttgataaccagattgtgacactagagcagattgaaagcaatattgttcgttgcccgaaccctgaatatgcagaaaagatgattggtgccattgattatgtacgagtgaggggggattctgttggtggtgtcgtaacttgcattgttagaaatgttccacgaggtcttggtacaccagtctttgataaacttgaagctgagctggctaaagcttgcatgtcattaccagcaacaaagggttttgagtttggaagtggctttgcaggtactttcatgactggcagtgagcataatgatgagttctttatggatgaacatgaccaaatcaggacaaaaaccaatagatctggtggtatccagggaggcatatcaaatggagaaattattaatatgagagtagcattcaagccaacttctacaattgcaaggaagcaacatactgttagtagggataaacatgagactgaactcattgctcgtggtcgccatgatccttgtgtggttccacgagctgttccgatggtggaagcaatggtcgccctagtgctcgtggatcagttgatgactcaatatgcacaatgtatgctatttccagtcaatcttacactacaggaacctttgcagccatcgacaaccaagtcagcttaggttcccctttaaaaggagctgagcagtttgcgtacccccccccccccccattacaacttctcactacatggcttctcacatttctggcattctactacgtttggagagtgaaattttttgttaaaagaagttatcctcaacacatagagagttatattgttgaacagagaaatgtatatagattttgttgttggagctatcaccagtttgttgctccgacttttcaattatgtcttttgctatgtgttggatccttcaaaaatagtgcgtttttggagaatccatcataggcacaacaatatttttgaagagtctatacggagagacaagtacatctaaaaaaaatgtgaaattgtgacgttttcattattttataggcttttcttgtgtttgtaaactcaagttgtactcacataagattgttaacaatgtaatttgtataatacaaacatttacgatttcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="-" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="70365" stop="61542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70065" g_stop="70046" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70045" i_stop="69085" i_length="961">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69084" g_stop="68934" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="171" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68933" i_stop="68665" i_length="269">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68664" g_stop="68588" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="248" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68587" i_stop="68505" i_length="83">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68504" g_stop="68446" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="307" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68445" i_stop="67821" i_length="625">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67820" g_stop="67737" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="391" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67736" i_stop="67615" i_length="122">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67614" g_stop="67522" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="484" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67521" i_stop="66766" i_length="756">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66765" g_stop="66685" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="565" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66684" i_stop="64867" i_length="1818">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64866" g_stop="64735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="697" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64734" i_stop="64627" i_length="108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64626" g_stop="64524" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="800" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64523" i_stop="63159" i_length="1365">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="63158" g_stop="63064" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="895" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="63063" i_stop="62959" i_length="105">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="62958" g_stop="62893" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="961" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="62892" i_stop="62803" i_length="90">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="62802" g_stop="62718" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="962" r_stop="1046" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="62717" i_stop="62444" i_length="274">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="62443" g_stop="61842" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1047" r_stop="1648" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="-" ref_id="SGN-U313393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70065" e_stop="70046"/>
          <exon e_start="69084" e_stop="68934"/>
          <exon e_start="68664" e_stop="68588"/>
          <exon e_start="68504" e_stop="68446"/>
          <exon e_start="67820" e_stop="67737"/>
          <exon e_start="67614" e_stop="67522"/>
          <exon e_start="66765" e_stop="66685"/>
          <exon e_start="64866" e_stop="64735"/>
          <exon e_start="64626" e_stop="64524"/>
          <exon e_start="63158" e_stop="63064"/>
          <exon e_start="62958" e_stop="62893"/>
          <exon e_start="62802" e_stop="62718"/>
          <exon e_start="62443" e_stop="61842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACAGCCCAAACGACTAGGTGAAACTTTCTGTCATCCATCTGCTTGTCGAAATGCCTGAATGAACTTGATTTGAGGTTTCCATCTTTTATTCTGCTTTTTGTGTGAATTAAGGAAACGGGTTTTAATCTTTATTAGAATATGATCATTAAAATAGGAAAAAAAAGTAGTCTTGGAAATTTTTTATTTTTGTTTAATAATGGGGTAGGGGAAGGGGAAATGGGTGGGGAACTGAAACCATGAGTCTGGTAATTGGAATGAGTATAATCTAAATCTCGATCCATTGGAGGGCAAGTTTGGTGCCAACAGCGGCGGTAATTCCAGCTCTAATAGCATATATTTAAGTTGTAGTTAAAAAGGTCGTAGTTGAACTTACTAAGATTCCCAAGTCTATGAAGTTGATATCTCTTTTGTACTTTTTTTTTGTATATGTGATCATTCCACCATGTATGAATTCACCATCTTTTTTTTTCCTTTGTCGAAAATTTAACTTCAACTGTGGTGGGCTATGATTTTCAGTTCATCTTCATTATATGTTATCTGGATCTGTCAATGTTTTAAAATATTATCTCATGTTTCAATTTGTTTGACTTACTTTTATTTTTAGTTTGTTTCAAAAAGAACGTTCCCTTTTTTTTAATGATAACTCTTTAATTCCAACTTTTCATGTGACATGTTCAAGGCCACGTGATTAAAAGACATTTTGATACATTCTACGTGTTTTTAGTTTGAGGTCACAAGATTCAAAAGTCTTGTTGCTTTCTTAAACTCCGTGCCAAGTCAAAATCAAACAAATAAATCGAAAGGGAGGGAATACTTGTTTCCATTCTCTACAAAATACTGTACTTTTCTAATAAAGAAGTGTTGCGAGGCAATATGGGAACAAAAAGTATAAAAAATGTTTCTTCATCGATCTTAAGGGTTTATTCTTAAGTTGCTAGAATGGATTGACAACTTCTTTATCTACTTTTGTACTCGCAGAGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAGGTGTTTACTTGTTCTGAGATTTCCTTTTGTGAGTTGACATGACTAGCATCAATGAAGATTTTGTGTACTAACTAGATTGAAGTCCTTCAAAATTCTTGATCTTCTATCATTTCTTGTAACTGTTTTATGTATTGCCCATTCTTGACACCCCCATCTCAGATAATTGATGGAGTAATTCATTAGGATACTTTAATTTTTTTTTGAAATAGAAGGATACTTTGAATTTATTTTTGCCAAATTTGAATTTCATGCAAAACTTATCCATTCAGGAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATGGTTTGTTAAAGTCTCTTCTGGTCTGTGCCACTTCCTTTGACTTACATTTAAAGATTCATCTTCTATCTGTGCTTAATTTATAGGTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAATGTACGTATGCTATGATTTGTTTTGAAATACAGGAGAGGAAGTGAAACAACAATTTAGTTTTTATAATGATCTATATGTTTTATTACTCGACTTTGCACGCAACATGCTGAACTTGATTTACTAGCTTGGTGCTAAGGTACACGATATCTAATCTGTCTGAGAAAAATCAAGTGTGCTAACCTTGTGTTCTTGTGCATAGAAAGTTAACTTATGGTTAGTTAAGTTGAGTGTTTCCAAGAACATGCTAACTTCACATCCTTGGCATGTCTAGTTTATTGCCTTAAGGGCATGGATTAGTGACATTCTTAGCATTAGTAACTGTGAGTATTAGTATCACTCATCATTCTTTCAGAGGTTGAATTCTGCATGCATGAGACTTTGAAATGATTCTCTAAAAGTTGGTGAATGGTTCTTGTGCTTTTATGAACCATGCATATTTTGAATCAGAGCATTGCATCCTGATATTTGACAAATAGCTTTGAAGTGAAAAGGATTAACATTTCAGCCTTATCTAAGACTCGTGATTGAAGATGTTATGCTTAGCATGTGTTCTTTTCTTTTTTTGTGTCAAAATCTGTGGTCTCCTGGTACTTGACAGATTTCTCATTTCCTGTTGGATTGCCAGGACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAGGTAATGTCAAAGAGGAGCTAATTTATTATTAGAAAGTCTTGCAGATTTGTTGATAAGCAATTCTCTGTAGTTATAGCTCTTACTATTTTGTGTGCCCTTACTAGTGTTAGTGGAACATGCAGGGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAGGTGAGGTACTTTATTGTTACAGGTTTTCCAATATCATTTCTGAATGATATTTGTTGTATCATTACATAAATTGTTACTGAAAAGAGCTTCCCTGATGTGTTGCACGGATGTTAAAGGCATATCAATTTTTCAAATCCATCCCCTATCCCAGTTTTTATTCACGAACTAAACACTAGATAGTAAAAACTGTAGATCCACTTCTTTTTTGGGGATTATTGATCCATTAATCATCATCAATGCCTTAATAACAAGTTGGGCTCCATTATGAAGCAATAAAATCAACTATCATGTTCATTAGAGTTATGTTGTGTTCTAGATGAATATGCAGCCTAAACATCTAGAGAATGTAATTGGACTTCTAAGTAAATTTTGAAGCACTGAGGTGGGTTGCTATCATATGATTGTGATTTAGTAGAGGCTTTTTGGTAGGCCCGATAAGCGTAGTTCCTGTATTTTGTCTTCTCTTGTAAGATTTCAGAAGCACCCATATGTATACTTAATGGAAGACACATACTTGTTGTTCTGAAGAACTTGAAACTTCTGTGTATTGCAACAACAAAAAACCGTAATCTTATGTATTTATGGTGGAAATTAGCTTTGCTGACTCTTGTTGCTAGAGAGTCTATTACAGTAGTTGCATATACATATATATATCTTTATTGATTGTCGCATTATGTGGAGACTTCTTCTACTCTCTTTTTTTTTTGGCTTTTTCTAAAGAAATGTAGCTTTTAGCTCTAATATTCTGTAATGCAGATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAGGTATGTTTCACATGAGAACTATATATCTATATCTCAAAAAAAAAAAAAATCATAACCGCACTGTCCGGGCAAAATAAGCATTTGTGGCCTGTGTGGCCCAAAAAAGCTGGCTCCGATCATCATGTTCTGATTCCTCATTATCAAGATCACTTGTTATGTCATCAGAAGTTGATGATTCAATCACCCACTAATTCTTATCTTCAGGGTCATCATTATCTTCATCAGTTGAAGCTTTGGATTCTGACACAGAATAAGAATATGAGGTGCATTCAGTATACTTTTCCTACGTGTCACCTCATCTGCTGCATTCAATATAGGACTCCTTAACCCAACATTCGAGCAAACCTTCTCCTCAATGATAACAACATCAGGATCACACTCCTCCTATGTGAAACACAACATCATGGATTGATGGGTCTACCTCTAATGTAAAGAAATGGACCTTGGCCTAGCTCAAACCCAAAAGCTAGCTCATCAAGGAAGGATTGACTAAGACCATATAAAAGACCACAACCCTTTCAGTCGACCAATTTGGGACTTTTTTAATTGATAATGCCAATATGGGACTTAACAAATTTCACTTTGCTTTTGCCACTGAGCAGTATGCTATTGTTTCGTTACTCATTTTGCTTCCAATTGATACTGATGTCATGTCTCTTTCTGCTTTAAATTAATACCATGTCCACTCCGTAATCTATTCTACATCTTAGACTGAGTTATGATTATAGTAACTACTTCCTGTTCACTTATCTTCGTGGGTTTCTTTCTCAAGAAAGGAAAGAAGAATGTAAATAATTTAGGGAGTGTTTTATTGTTTCAGATCATAATTTCTCTTCCAAATATGCTTGGCTTGGATCTTTTTCTACTTTTAGAAGCCCATATATTGGTATTAGCTAAATCAGACATTGCTTCACCTTTCCTTGGATGAGACCTGCTTCGCTAATGGCTGAAAGGCGACTCATCCTGCATGAGATAAAGCTGATTTTGTATAAAGGACGACTCATCCTGCATGAGATAATGCTGATTGTTGGAGGATTGACCTAAGGTTGACTAGCCTGTAGGAAGGAAAATGCGATGAGAATTATTGCCACAACAGACAAACTGGTTAGATGTGTAAACGACGAAGGAAATCCCACTTCTATTAGAAGCTTAAAAGATTATAGAAAAGAGCTTTCAAGGAGGGTAGATTTGACTCCGAGGCAACTTTTCTAAACTGCACTATAGGATCTGTATATGAGCTTTATAACTTGCCTAATAGTGTGTATAATAAATGAGGCTAGAAAAATTACAGAAGAGAACTTTCAAGGAATATTTGAGCCTATGCCGATGTTTCTTTCTCCATATATGCTCTGTGGGATCTCTGTATGAACTTTAGCAGTTGAGCTATAGAGTGGATATAAACACCATATTGCTTGATCTATCAATTTCTTGAACTCATCCGATACATTCAGGAAATACTAAATATAAAATGTACCATAAAAAGAAAAAGGAAAACAATACAGTGTCCTTTCTGTTGTTGGGGAAAAATCGAAGATTTCACATGGTACTTTTATCAATCTGATTTATTTCGTACCTTTCGTTCAATGAGAAAATGGGCATTCCCTTGTGGAGTGGAAGAGACTATTTATAATGCACTCAGCGCATGGATTGCCGCTTCTGTAAAGCATGGAGTGTGGAGACTGGAGAGTATTATAATTTATATAGTGCATATTTGTGGTTTTCTTTATTAACAATTGTCTTCTGGTATAACTTTGATAGTTTTTGATCTTCTGGTGATAAAAGAACTTGATTTATGTGGTAATTATCACTTAATGCCAGATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGAGTAAGTTCTCTCTCTCTCTCTCTCTCACTCTCTGTGTGTCTGTTAGTTATCGTGCATGTCTTTGGTGCTGGTGGAACCTTCACATGATAGTTTGGTGATAATTACTAGGGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAGGTACAGAATCTTCATACTATGGAAGTTGTTAAAATTTACTTTTAGTTGCTGCTATAACTTTTAGCATTGATAAGTAGCTTAGCTTTAGTTTGTTGAGATATTTTATATTTTTGAATTTTGAACTATGCAAATTTTTTGTTGTAAGTTGGCTATTTAAAGCTTCCCTATGCTTAAGAAAAATATTGAGAGACATTTTCAATCAATATTTTCTAACCCTTTTTGCTGCATCATCTTTTTAAAAAACAAACAGAAGTGATTTTCTTATTATCTTGTTGCTGTATGATAGCAAACTCCTAAGTCGAAACAGATTAATCAAGATAGGTGTTATCATCTATATAGTATGGTTTGGGGAACCTGTTCAATGAAAATATGAACCAGGTATTATGAAAAATTTCATTCAGATTTTATCCAAAGAAGTACAAGTAGTTAAAACTATTAAAATAATTGCAAAATTACCCAATAACATGAGTTAAGTGAAAAGGAATCGTCCAAATCTAGTTCAGTATTGCATAAAATGTATGAAGAATCAATTTTAAGACAGTTCACTACCTCCGATGACGAAGCCCTGACGACTTAAGCATCCATTTTCTGTTACCAGGTGCAACTTTGAACTGTTCTATTTCTTCTCCTTTACAATCTTGCCCGACCTATTTGCTTCTGCTTGGAGCTCTCGATAACAGAACCTCCTTGAATGCCTTGGTCTTTTTATGCCCTTTCCTATCCCTCTTTTTGTTACTTAGGTAATCACCCCCTTTCTGTTTTGACAAAATCGTATCACTCATGACAAAGATGCGTATCTGCTGGAATCTGAATTCGCAAGATTATCTCCCCAAATTAAGCCTAAGATGTCTTTAGATCGAAGCTGCATTCTAGCATCTCTCTATGATTAATACGGTTTGCGTTGGTGTCTAGATGATATTGGATTATCAAGGTTTAACATTGTTGAAGCATATGAAATGCTAATGCTTCCAGCTTGAACTAGATAGGAAAGATAACGGAAAGATCTGGCTTCAGAGTACCAAAAGTTTTTAGGTGGTCAAGTGTGCTTCATTGAGTTTAGATCTACGATGTGGCTGGTCCAGGGGGTGTTAGTTACTTGACTGGTGATTTAAGGGGATTAAACAATTAATGCTAAGGATCTTAGTTGATTCATTGACACTTTGTTTACGGCATGGTTGGTTAGAATAGTAAGGAAGTTGGCCAATTCAGATGCGAGTCATTCTTTGTTCAAAATTACAGATGTAGACAACTTCTCTGAATTTAAATATGGGTATCGTCCTATGTCAAAAAAACTTGAAGGCCTCTAACATGTTAATATCTTTGATAAACCTCATGTTCTATTTTGTTTCTGGTGAAAAACTACAGGTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAGGTACACTCGCAATATTTGCAATATTCATTTGGATATGTCTTTAGAAATTGACAAACAATTCCATTTCCTTTTCAAGTTGAGTTATCTGTTTAATTTATTTCACAGGGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCAGTAAGTCCCAGTCTCTATAAAAAAAAAATCCATTTTTTTTCAAGTTAGGTTATTCTGTATGAAATACGTCTTATTTGAATTGTTATGCAGAGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAGGTTCGTATGCCTGACTTTGACTATTACTTAATTTGGCTTGTCCCTTCCTTTCGTCGTACTAGGATCTTTACTCTTAGAAACCACTTAGGTGGCATGACATCTAGACTAGCTCGATCTGTTCTTGTTCTTTACTGGTGTTTTTGTAAAATAACCAAGAGAAAATCTGCTTGCCATTTGCTCTACAAAATACATTCCTTTTTTGGTTCCTTTTTCTCCTTAAATATTTGAAAACCACTTGAAAAGTAAACGGACATTTGATGTCTTTGTGCAACAGCTGTTCCGATGGTGGAAGCAATGGTCGCCCTAGTGCTCGTGGATCAGTTGATGACTCAATATGCACAATGTATGCTATTTCCAGTCAATCTTACACTACAGGAACCTTTGCAGCCATCGACAACCAAGTCAGCTTAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTACCCCCCCCCCCCCCCATTACAACTTCTCACTACATGGCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGAAATTTTTTGTTAAAAGAAGTTATCCTCAACACATAGAGAGTTATATTGTTGAACAGAGAAATGTATATAGATTTTGTTGTTGGAGCTATCACCAGTTTGTTGCTCCGACTTTTCAATTATGTCTTTTGCTATGTGTTGGATCCTTCAAAAATAGTGCGTTTTTGGAGAATCCATCATAGGCACAACAATATTTTTGAAGAGTCTATACGGAGAGACAAGTACATCTAAAAAAAATGTGAAATTGTGACGTTTTCATTATTTTATAGGCTTTTCTTGTGTTTGTAAACTCAAGTTGTACTCACATAAGATTGTTAACAATGTAATTTGTATAATACAAACATTTACGATTTCATA</genome_strand>
        <mrna_strand>ATCACAGCCCAAACGACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAG.............................................................................................................................................................................................................................................................................GAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATG...................................................................................GTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAG..........................................................................................................................GGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGA............................................................................................................GGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAG.........................................................................................................GGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCA..........................................................................................AGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAG..................................................................................................................................................................................................................................................................................CTGTTCCGATGGTGGAAGCAATGGTCGCCCTAGTGCTCGTGGATCAGTTGATGACTCAATATGCACAATGTATGCTATTTCCAGTCAATCTTACACTACAGGAACCTTTGCAGCCATCGACAACCAAGTCAGCTTAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTACCCCCCCCCCCCCCCATTACAACTTCTCACTACATGGCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGAAATTTTTTGTTAAAAGAAGTTATCCTCAACACATAGAGAGTTATATTGTTGAACAGAGAAATGTATATAGATTTTGTTGTTGGAGCTATCACCAGTTTGTTGCTCCGACTTTTCAATTATGTCTTTTGCTATGTGTTGGATCCTTCAAAAATAGTGCGTTTTTGGAGAATCCATCATAGGCACAACAATATTTTTGAAGAGTCTATACGGAGAGACAAGTACATCTAAAAAAAATGTGAAATTGTGACGTTTTCATTATTTTATAGGCTTTTCTTGTGTTTGTAAACTCAAGTTGTACTCACATAAGATTGTTAACAATGTAATTTGTATAATACAAACATTTACGATTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321036" ref_strand="+" ref_description="SGN-U321036        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | alpha-glucosidase 1 (AGLU1), identical to alpha-glucosidase 1 (Arabidopsis thaliana) GI:2323344 | chr5:3776815-3780129 FORWARD | Aliases: T22P22.110, T22P22_110(evalue: 0, score=1100) genbank/nr: gi|15239154|ref|NP_196733.1| glycosyl hydrolase family 31 [Arabidopsis thaliana] gi|11264150|pir||T48531 alpha-glucosidase 1 - Arabidopsis thaliana gi|7573386|emb|CAB87690.1| alpha-glucosidase 1 [Arabidopsis thaliana] gi|15450745|gb|AAK96644.1| AT5g11720/T22P22_110 [Arabidopsis thaliana] gi|25090119|gb|AAN72233.1| At5g11720/T22P22_110 [Arabidopsis thaliana](evalue: 0, score=1100)">
      <seq>ttgaggcgaaagagcgtttaagagtcagaattacggatgctgatcatgaaagatgggaagttcctcgagaatttatccctcgggaaactcatttacccccccgaagctccctcttggaaaagcgttcttctacctcatttccattatcagaagaaacgcactacttccatacagacaccgtttcggaccttgctttcactctctacaacaccaccccttttggctttactatcacgcgccactccacaggtgacgttctttttgacaccagacctgagaatgactctccagacacgttcttcatcttcaaggatcagtaccttcaattgtcctcttcattgccagccaataggtcatctatttatggtctcggggagcataccaaaagaaattttaagctcaagcataatcagacattgactctttggaatgctgatattgctagtgctaatgctgatctcaacttgtatggttcccaccctttttacatggatgtcaggtctcatcctggcggggggactagtcacggagtcttgctgttcaatagtaatggcatggacattgtgtacgctggtgacagaattacatacaaggtgattggaggggtggttgacttgtacttctttgctggtcctgtgccagagttggtcatggaacagtacacagagctcattggccgcccagcgcccatgccatactggtcttttggatttcaccaatgccgttatggttataaagacattactgaaattaagaatgtggttgctggctatgcgaaagctcagatccctctcgaggtcatgtggacagatattgatcatatggatggttacaaggatttcacactcgatcctattaacttcccacttgaccagatgaagaaatttgtcgatacacttcatcagaatggccagaaatttgttctcatattggatccagggatcagcataaatagctcatacgaaacatacaagagagggatgcaagcagacgttttcatcaaacgcaatggtgtcccttatcttggcgaagtttggcctggaaaagtctactttcctgatttcataaatccccgagggagagtcttctggagtaatgaaatcaagattttccatgaccttctccccatcgatggtctctggcttgacatgaatgagttatctaacttcatttcttctcctccgagcccctcttctacccttgacaaccctccttataagatcaataactcaggaggcttacgtccaataaacgagaagactgtcccagcaacatcagtacattttgggaataccttagagtacgatgttcataacctctacggattcctggaagctaaaacgaccaatgctgctttaatcgatgttactggaaaaagaccatttatacttagcagatctacctttgtgggttctgggaagtacacggcacattggaccggagacaatgcagccacatgggatgacttggcttatagtattcccagcgttttgagttctggactgtttgggattcccatggttggagctgatatatgtggctttggtagaaatactacagaagaattatgtcgtcgttggattcagctaggtgcattttatccctttgcaagggatcactctgagaagttcactatccatcaagagctatatatctgggattcagtagctgcaacagccagaaaggtgctcggactacggtatcgtctcttaccatacttctacacgctaatgttcgaggcccacaccaaaggcatccctatagcgcgtcctcttttcttttcatttcccgaggatgcaaacacttacaccatcgactctcagtttctcatcggtaaggggttaatgatatcaccagtactgacatctggagcagtttcagttaacgcgtatttcccatctggtacctggttcaacctcttcaactattcaaactacgtcaacatgaagtccggtagctacatcagtctagacgcgcctcctgatcatatcaatgtgcatctcagagagggaaacattgtggtgatgcaaggagaagcaatgacaacaagagcagccagggatactccgtttgaacttgttgtcgcgatcaacaactggggaaatagttcaggggaagtcttcttggacgatggcgaagacgttgaaatgggaggagagggaggaaaatggagcctagtgaaatttcacactaatgttgtgaataagaagttatatctaagatcaaatgttgtgaatgaagagtttgctttgagtaagaattggagaatacacaaagtgacttttcttggactgaaaaaaggggtgagtaaaataaatgcatataatttgactactaaaattagaacaaaaattgataaaagtgcatttggtgttttggagatgggaggtctgtcagttctaattgggaaaagatttactatagagctaacactttgaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="72554" stop="77033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72854" g_stop="73561" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="74127" i_length="566">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74128" g_stop="74358" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="939" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74359" i_stop="74597" i_length="239">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74598" g_stop="75244" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="940" r_stop="1586" r_length="647" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75245" i_stop="75876" i_length="632">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75877" g_stop="76733" g_length="857"/>
          <reference_exon_boundary r_type="cDNA" r_start="1587" r_stop="2443" r_length="857" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-U321036" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72854" e_stop="73561"/>
          <exon e_start="74128" e_stop="74358"/>
          <exon e_start="74598" e_stop="75244"/>
          <exon e_start="75877" e_stop="76733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGCGAAAGAGCGTTTAAGAGTCAGAATTACGGATGCTGATCATGAAAGATGGGAAGTTCCTCGAGAATTTATCCCTCGGGAAACTCATTTACCCCCCCGAAGCTCCCTCTTGGAAAAGCGTTCTTCTACCTCATTTCCATTATCAGAAGAAACGCACTACTTCCATACAGACACCGTTTCGGACCTTGCTTTCACTCTCTACAACACCACCCCTTTTGGCTTTACTATCACGCGCCACTCCACAGGTGACGTTCTTTTTGACACCAGACCTGAGAATGACTCTCCAGACACGTTCTTCATCTTCAAGGATCAGTACCTTCAATTGTCCTCTTCATTGCCAGCCAATAGGTCATCTATTTATGGTCTCGGGGAGCATACCAAAAGAAATTTTAAGCTCAAGCATAATCAGACATTGACTCTTTGGAATGCTGATATTGCTAGTGCTAATGCTGATCTCAACTTGTATGGTTCCCACCCTTTTTACATGGATGTCAGGTCTCATCCTGGCGGGGGGACTAGTCACGGAGTCTTGCTGTTCAATAGTAATGGCATGGACATTGTGTACGCTGGTGACAGAATTACATACAAGGTGATTGGAGGGGTGGTTGACTTGTACTTCTTTGCTGGTCCTGTGCCAGAGTTGGTCATGGAACAGTACACAGAGCTCATTGGCCGCCCAGCGCCCATGCCATACTGGTCTTTTGGTGCGTAATTATACCAGCGACTTATCTATTATTTCATAGTGTTTATTCTGGTTACTAATTTCACATGACCTTAACTTTTGAATTTTGTTTGGTACTTCCCACTTAGTTTCCTCAAACTGTTCCATTCACATGCTTCTTCGTGATGTTAAAATATTATTCCCTCCGTTTCGATTTGTTTGTCTTATTTTCCTTTTTTGGCAACTTTTTAATTCTAACTTTCCCGATGACATGTTTAAGAACTCAAGATTAGAATACATTTTACATATCACAAGATTCAAAAATCTTCTTTATGTTCTTAAAAATTCTATACCTAGTCAAAACCAGACAAAGAAATTGAAATAGAGGGAGTAATTTTTCTACTTGTGTCAAGTACTCGTTAGTGTAGACCTCGGTTATATAACATTTCGTGATCCTATCCCTTTCAGTACTCATAATGGGATGTGTAGAGCTTTTACTAGTTGTGAATATGAGGATCGAGTTTTCTTTCTACAATATATACACTATGATTTGAGACAGATAGATGCACACATTGTTTTTATGCAAGCTATTGCAAATTGTTGCGACAGGATTTCACCAATGCCGTTATGGTTATAAAGACATTACTGAAATTAAGAATGTGGTTGCTGGCTATGCGAAAGCTCAGATCCCTCTCGAGGTCATGTGGACAGATATTGATCATATGGATGGTTACAAGGATTTCACACTCGATCCTATTAACTTCCCACTTGACCAGATGAAGAAATTTGTCGATACACTTCATCAGAATGGCCAGAAATTTGTTCTCATATTGGATCCAGGTGAGTTATGAGTTATAACATATCTAATTTCTTGCTTTTGTTGATACTATACGTCTGTGGAATCAGTGTCAGGGTAGGCTGCCTACATCACACCCCTTATGGTGCAGCCTTTCCTAGACCCTCCATGAACGTGGGATGCTTTGTGCATCTGGCTGCACTTTATTTTGTTGAATTTATACTTGCGTTGAGAAATTGCGAAGGTATTGGTTCAAATGATTTCAATGATTTGTACTTCACAGGGATCAGCATAAATAGCTCATACGAAACATACAAGAGAGGGATGCAAGCAGACGTTTTCATCAAACGCAATGGTGTCCCTTATCTTGGCGAAGTTTGGCCTGGAAAAGTCTACTTTCCTGATTTCATAAATCCCCGAGGGAGAGTCTTCTGGAGTAATGAAATCAAGATTTTCCATGACCTTCTCCCCATCGATGGTCTCTGGCTTGACATGAATGAGTTATCTAACTTCATTTCTTCTCCTCCGAGCCCCTCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCAGGAGGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTTGGGAATACCTTAGAGTACGATGTTCATAACCTCTACGGATTCCTGGAAGCTAAAACGACCAATGCTGCTTTAATCGATGTTACTGGAAAAAGACCATTTATACTTAGCAGATCTACCTTTGTGGGTTCTGGGAAGTACACGGCACATTGGACCGGAGACAATGCAGCCACATGGGATGACTTGGCTTATAGTATTCCCAGCGTTTTGAGTTCTGGACTGTTTGGGATTCCCATGGTTGGAGCTGATATATGTGGCTTTGGTAGAAATACTACAGAAGAATTATGTCGTCGTTGGATTCAGGTACAAATTCTTGTCTTTAAAGAAGTACTTAGCTCCAGATATACATTAAAATTATATGATTTCAGTCCAGAAGTTCAAATGTGAAACTTCCAGGAAAAAAACTTCAAATAACTCCTTGCTATTGGCTGGATCAACTTGACTGGCTAAGATTAAAGAACAAAAAGAGATCGAATCGGAGAAAGCATGACTAGTTAGAAGTGCCTGGTCTTATTATATGTCTAAATTAAACTTGGTGATCTGTTGAATTTGATACTCGTTGTATGGTCGATTATTTTCGCATATCAACTAGTGCTCACTATCCAAAACCCAGAATCCTCATCTCATTAAATATAAATCCTAGATCCGCCTGTGGCTTCCATGACCTTAGAATTATGAGTGCTCAACTGGTCCAGTGAATCTTGTTTTCTGCCAACAATACTCGTAGTATTACTCTTGTGGTTTCTTGTTTTTCTGTTTCTGTTTATCCAATGTTCTTGTACTTCGATTATCATATTATTTTGTCGTTCTATGTTCTCTACGGGGAAACACAGTATGTGCTCTAGGAAAATGAAATTTCAATTTTCTATTCAATTCAGAATTCAAATATGAAGTACGATGCTTTTCTGATATCTGATTATCAACATCTAATGTAGCTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAATGTTGTGAATAAGAAGTTATATCTAAGATCAAATGTTGTGAATGAAGAGTTTGCTTTGAGTAAGAATTGGAGAATACACAAAGTGACTTTTCTTGGACTGAAAAAAGGGGTGAGTAAAATAAATGCATATAATTTGACTACTAAAATTAGAACAAAAATTGATAAAAGTGCATTTGGTGTTTTGGAGATGGGAGGTCTGTCAGTTCTAATTGGAAAAGAATTTACTATAGAGCTAACACTTTGAAAATT</genome_strand>
        <mrna_strand>TTGAGGCGAAAGAGCGTTTAAGAGTCAGAATTACGGATGCTGATCATGAAAGATGGGAAGTTCCTCGAGAATTTATCCCTCGGGAAACTCATTTACCCCCCCGAAGCTCCCTCTTGGAAAAGCGTTCTTCTACCTCATTTCCATTATCAGAAGAAACGCACTACTTCCATACAGACACCGTTTCGGACCTTGCTTTCACTCTCTACAACACCACCCCTTTTGGCTTTACTATCACGCGCCACTCCACAGGTGACGTTCTTTTTGACACCAGACCTGAGAATGACTCTCCAGACACGTTCTTCATCTTCAAGGATCAGTACCTTCAATTGTCCTCTTCATTGCCAGCCAATAGGTCATCTATTTATGGTCTCGGGGAGCATACCAAAAGAAATTTTAAGCTCAAGCATAATCAGACATTGACTCTTTGGAATGCTGATATTGCTAGTGCTAATGCTGATCTCAACTTGTATGGTTCCCACCCTTTTTACATGGATGTCAGGTCTCATCCTGGCGGGGGGACTAGTCACGGAGTCTTGCTGTTCAATAGTAATGGCATGGACATTGTGTACGCTGGTGACAGAATTACATACAAGGTGATTGGAGGGGTGGTTGACTTGTACTTCTTTGCTGGTCCTGTGCCAGAGTTGGTCATGGAACAGTACACAGAGCTCATTGGCCGCCCAGCGCCCATGCCATACTGGTCTTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCACCAATGCCGTTATGGTTATAAAGACATTACTGAAATTAAGAATGTGGTTGCTGGCTATGCGAAAGCTCAGATCCCTCTCGAGGTCATGTGGACAGATATTGATCATATGGATGGTTACAAGGATTTCACACTCGATCCTATTAACTTCCCACTTGACCAGATGAAGAAATTTGTCGATACACTTCATCAGAATGGCCAGAAATTTGTTCTCATATTGGATCCAG...............................................................................................................................................................................................................................................GGATCAGCATAAATAGCTCATACGAAACATACAAGAGAGGGATGCAAGCAGACGTTTTCATCAAACGCAATGGTGTCCCTTATCTTGGCGAAGTTTGGCCTGGAAAAGTCTACTTTCCTGATTTCATAAATCCCCGAGGGAGAGTCTTCTGGAGTAATGAAATCAAGATTTTCCATGACCTTCTCCCCATCGATGGTCTCTGGCTTGACATGAATGAGTTATCTAACTTCATTTCTTCTCCTCCGAGCCCCTCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCAGGAGGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTTGGGAATACCTTAGAGTACGATGTTCATAACCTCTACGGATTCCTGGAAGCTAAAACGACCAATGCTGCTTTAATCGATGTTACTGGAAAAAGACCATTTATACTTAGCAGATCTACCTTTGTGGGTTCTGGGAAGTACACGGCACATTGGACCGGAGACAATGCAGCCACATGGGATGACTTGGCTTATAGTATTCCCAGCGTTTTGAGTTCTGGACTGTTTGGGATTCCCATGGTTGGAGCTGATATATGTGGCTTTGGTAGAAATACTACAGAAGAATTATGTCGTCGTTGGATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAATGTTGTGAATAAGAAGTTATATCTAAGATCAAATGTTGTGAATGAAGAGTTTGCTTTGAGTAAGAATTGGAGAATACACAAAGTGACTTTTCTTGGACTGAAAAAAGGGGTGAGTAAAATAAATGCATATAATTTGACTACTAAAATTAGAACAAAAATTGATAAAAGTGCATTTGGTGTTTTGGAGATGGGAGGTCTGTCAGTTCTAATTGGGAAAAGATTTACTATAGAGCTAACACTTTGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320494" ref_strand="+" ref_description="SGN-U320494        Tomato 200607 #1 [11 ESTs aligned] genbank/nr: unknown(evalue: 4e-76, score=288)">
      <seq>actcctaattctttcccctttcatcaagcgatttgtctgtgtcttcttgatttttccctctttctctccattagacactcaattttcttttgcgtatttgcctttagatttttccttctcgtatttacttgaattgggtataacccatttgaattttcaactttgtatctgatttttcggtttaaaaatcgattcttttggtcaagaactgatatgggtgttggaatttctgtgcttatagccataaagtcagtaactttattcatattatttgcaactctcaagaattatgggtacccattattgtcaataccttgtttgtatgcatcattggtatctttgttggtagcattagctgctaacccttcaattgatcttccaattcttttggggaaaaacacagatgggacattcccaatttggtcacttgtgatgtttagtccttacttgtattttgttaggggtttttcagctttgagaagaatgaagagtggggaacctccatatagtgagatttctgaagggttgtatgttgggggttggccttgttcacttgataaattgccacctggtaatcctgctattattgattgtacttgtgagatgcctaggatgttggagtttactggaaatcatgcatttttgtgtattccaacttgggatactaggtcacctcagccagctgatatagaggttgctattaagtgggcttgtagaaaaagagctcagaagatacctgttttcatccattgtgcatatggtcatggaaggagcgttgcagtcatgtgtgcactgttagtagctcttggtctagcagaagactggaaaaatgctgagaaattgatcaaagaaaaacggccatacatacgaatgaacgctctgcatcgcaaagctttagaggaatggtcgaaggatcgtctctcttccccaaaagttggagttagttccgtgattctgtcgagtgctaacgaccgttcctgatcaattgactgcagttgcaagaccaattaattatatagatgattggctgtttgtcttcacttttgattacacactatacttgatgattgagatttttgcttctttttatcaagtagaagcgtactctcttgatatatttcttgtaatagaaaatgtttgattgccaggattgtgtttgacataaaaattcttaaaactatttttgaatcctaagcatctagtgaaactgtatttattgtgtatcaagattctgttatattcttaaaaagcagctaagtaaaaatacattctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="109648" stop="114067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109948" g_stop="110707" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="760" r_length="760" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110708" i_stop="113250" i_length="2543">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113251" g_stop="113773" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="1283" r_length="523" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-U320494" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109948" e_stop="110707"/>
          <exon e_start="113251" e_stop="113773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTAATTCTTTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATGGTATGATTGTGAACTTTAAAACTTTTTGTTTCAGATGAATGTATTTGTAGTCGATTATCGCATTATTTTGTTTTCGTTACTGATCTTTCTCCTGTTGGTTGTTGTTATTGCTCCAGTATCTGTATTCCCTTTTTCAAACTGTTTGTCATGCTTTATTTAAGTTGAGGGTCTATCCGGAACAACCTCTCTATCGTAGGGGTAAGATATGTGTATATTTAACCCTCACTAGACCTCACTTGTGGGATTACACTGGGTATGCCATTGTTGTCAAGTGGGGTCATGTTTTTCTATGTCCTTTAGATGTTACTACCTAAGTCCCAATTTAAGTGTGGTAGTTTGACTAGGCGCAGAAGTTGAATGAATAAAGGGAGAATTATGAATCTCGTGGTCTAAAATTAAAGATGTGTGTGGTTCTTTAAATCTTGTGGTTTTAAGTTTTCATGTCAGATGTTGGAATAGAGAAACTTACTACATATAGAAAGAGACACTGTTTTAGGACAGACCAAATTATAGCAAGACACTTAGATGGGGACGTAAGGAGTAAATGTTTCAGTAGTTGCTTGCTTGCCTGCCCTTCATTAGTGTGTGATTGTGGTAAAGTGGTTTCTTAAATTGCTTCCTTTGGGTTCATATTTTGGGTTTCACCTATTGTATTTATCACTGAAAATCATAGAACTTCTCAACTGATATTTCATAGGAGAAAGCTAGCAGTCTATATCCATTTTCCATAAGGAAAGCATGAGTTGTCTCGGGCCGAATTGACTAATCCATAAGGTGACTTATCCATATATGAGAGCTCCTAGTCCTGTGTGATTTACGAATGGTAGGCTTGGTTTAGGAATATCCAAAACAGTTGTAAAAATCGTCCATTTGCTTTTTTTCCCAATATTAAAACTTAAGGTAGTCATAAGGTAATCATGTTTATAATGTTCTTCAAGTTTTAGAAAATATGGTTGTTACTAACTTTCTTTAGTTTTTAAACTGCTTCCATATAGACATAAATGCTATACTACTTTGAGTGGTTCTTTAAACAGAAGCCTAGTAACACTTTTGGGTCATGCCTTGAAGATTTGACACCATAGAAGATGAATATTTGATAAAATTTCGTGTATTCTCATAGGTACCATGTCGGTTAGTCATAGCATATTGATATTGGTTAACAAAATGGACCTTAAGCCTAACTCATGAAGTGAAGGTCGTCTAAAATATATAACAACCTATTCTTTCGATTTTTGATGGAGGATTTTAAAGAGAGGAACAAAATGAAGTGGTAATCCTCAGATGGTCCATCCCAGTTGTTGGAACTAGACAGGAACTAGTATACCATGCTAAACTTGTGATTGCTTTGACTCCACTGTGAAATTTTTGGCTACTTATTAGCAGCAAGTGGTGCTTCTGAGGTCGTTAAAGACAATCCCATAGTATTGCATAGTTACATTAGCTATTGTATTTGCACTTCAATTTGTGCACGTGCATTTCAATAAATAGATCTTCTGTACAACTTGCAGTTTTTTTCTTTGAGAAAAGGTAACAGAAAATTGATTTCACTCTGCGACTGGTAATTTACATTTTGAAAGCCAGTTTTTGGTTATGAAAGTACAGTTCCTTAGGCTAGGTTGACTGATAGATACCAATCAGCCTCACAAACAGGAGGTCAATGTGCAGAGCCTTATTAAAATACTCTTTGCTGCCAAATAATGTGATAAATAAGGAAGCATCCAAGGGTGACCTAGTGATCAATGAAGTGGATTGAGAACCATGAGGTCTTAGGTTTCAAATCCCAGCATAGACTTAAAACACTATCTGATACCTGTTGTTGGTCAGACGAGGTAGGTATCCCGTGGAATTAATCGAGGTGCACAAAAGCATATCCCAGACACCACTGTCATTAAAAAAGTGATGATTAAGGATCTCTATTAAAACAAATCTGCAGGCTTCGCTCTGTGTTTGTGTTAAGAGTTTTATATGAGCGGTTTCACGCTGCTTTTAGAAGTCTCCACGTTTTGATTGTGAGATTTTCTTAGTAATAACCATTGATACAACGTGCAGGCCCATAGTTAAAGCTATGAAACCTCAAGTCTTTCCGGGAAGTTATCATTTTAGGATAAAGATAGTAGAAGTAAATTTGTTCTCTTGCATGTAGTGACAACTCATGTACTACTCTCTTTGTTTCAGTCTGTTTGTCTACTTTTCTTTTTAGTCCGTTTAAAAAAGAAGACCTCTTTTCTTTCTTGTCAACTTTTTACTTTCAAATTTTCACATGACGAGTTTAAGACCACACGATTAAAGTATTTTGGTATATTTGATACATCTTTTGCTTAAGACCATAAGACTCAAAAGTCATCTTTACTTTTTTAAACTCCATTTCAAGTCAAAACTAGACTTAACAAATTGAAACGGAGGGAGTACTTAAACTGCATCAATCAACAGCAATGCCTGCAGGAAACTGTCTCGAGGAGCTTAACTTCCTTATTAGTTTCTTTGATGCTTCAATAGATCATTGCAATGTAACATAAAACAAATTATTGATTTGTTTCCTCTAGGTCATGGAAGGAGCGTTGCAGTCATGTGTGCACTGTTAGTAGCTCTTGGTCTAGCAGAAGACTGGAAAAATGCTGAGAAATTGATCAAAGAAAAACGGCCATACATACGAATGAACGCTCTGCATCGCAAAGCTTTAGAGGAATGGTCGAAGGATCGTCTCTCTTCCCCAAAAGTTGGAGTTAGTTCCGTGATTCTGTCGAGTGCTAACGACCGTTCCTGATCAATTGACTGCAGTTGCAAGACCAATTAATTATATAGATGATTGGCTGTTTGTCTTCACTTTTGATTACACACTATACTTGATGATTGAGATTTTTGCTTCTTTTTATCAAGTAGAAGCGTACTCTCTTGATATATTTCTTGTAATAGAAAATGTTTGATTGCCAGGATTGTGTTTGACATAAAAATTCTTAAAACTATTTTTGAATCCTAAGCATCTAGTGAAACTGTATTTATTGTGTATCAAGATTCTGTTATATTCTTAAAAAGCAGCTAAGTATTATTCCATTCTTTACATTTGTG</genome_strand>
        <mrna_strand>ACTCCTAATTCTTTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGAAGGAGCGTTGCAGTCATGTGTGCACTGTTAGTAGCTCTTGGTCTAGCAGAAGACTGGAAAAATGCTGAGAAATTGATCAAAGAAAAACGGCCATACATACGAATGAACGCTCTGCATCGCAAAGCTTTAGAGGAATGGTCGAAGGATCGTCTCTCTTCCCCAAAAGTTGGAGTTAGTTCCGTGATTCTGTCGAGTGCTAACGACCGTTCCTGATCAATTGACTGCAGTTGCAAGACCAATTAATTATATAGATGATTGGCTGTTTGTCTTCACTTTTGATTACACACTATACTTGATGATTGAGATTTTTGCTTCTTTTTATCAAGTAGAAGCGTACTCTCTTGATATATTTCTTGTAATAGAAAATGTTTGATTGCCAGGATTGTGTTTGACATAAAAATTCTTAAAACTATTTTTGAATCCTAAGCATCTAGTGAAACTGTATTTATTGTGTATCAAGATTCTGTTATATTCTTAAAAAGCAGCTAAGTAAAAATACATTCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345253" ref_strand="+" ref_description="SGN-U345253        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G04810.1 | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile: PF01535 PPR repeat | chr5:1390038-1393931 FORWARD | Aliases: MUK11.12 (evalue: 2e-37, score=99) genbank/nr: gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis thaliana](evalue: 1e-35, score=99)">
      <seq>tttttgaaatatgatggtccaaatgctgagaaagcagctatgaaggcagtggattttgatggtgttgaatttcatggaagggtgttgactgtgaaattggatgatgggaggagattgaaagagaaaatagaggagaggaacacgtggcatgaggcgaaggaggggcccgggagagatttcaagaaggttctggcaatacagccggagaattggcaggcggttgttcgggcttttgagagaatcaagaaggtgttatgcttactggaatactgaagtaatctgcttgcagtgctgtagtcccttaaaatccatccaggaaagaatttggcttaatggtgaactactatgcaaggaggggagacatgcatcgtgcacgtgaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="116579" stop="118695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116879" g_stop="117186" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117187" i_stop="118320" i_length="1134">
            <donor d_prob="0.145" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118321" g_stop="118395" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="383" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-U345253" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116879" e_stop="117186"/>
          <exon e_start="118321" e_stop="118395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAAATATGAGGGTCCAAATGCTGAGAAAGCAGCTATGAAGGCAGTGGATTTTGATGGTGTTGAATTTCATGGAAGGGTGTTGACTGTGAAATTGGATGATGGGAGGAGATTGAAAGAGAAAATAGAGGAGAGGAACACGTGGCATGAGGCGAAGGAGGGGCCCAGGAGAGATTTCAAGAAGGTTCTGGAAATACAGCCGGAGAATTGGCAGGCGGTTGTTCGGGCTTTTGAGAGAATCAAGAAGGTGTTATGCTTACTGGAATACTGAAGTAATCTGCTTGCAGTGCTGTAGTCCCTTAAAATGTATGATTTGAAGTGTTTAGATACTTAAGTTAATACATTTGTTACTTATTACAAGCAAAAACATGATAAGGCTTTAGAATTGGATGAATTAAGTTGGTTCATTATGTGCTGTTAGCTTAGTTAATGTGGCAATACTTTTGGTGCTAAATGGTGAGAGCAAATATTTATGAGCTAATTGTTTTGGTAATGATAAAGTGATGTCTAGTACTAATCAACTACCAATGTTTCCTTTTTCTGATATTCCTCTATCTTGTTCATTGTGGCTCTAGAGCAAGAGAGGTTGGTAACTGAAAAAAGCAACATATCCACATGACCCTAGACAGGAAGGTATGGAGGTCGAGGATTAGAATAAAAGGTTAGTAGGTAGCCTAGTGTTGCCGCACTTTATGTGGGAGGGTAGGGGGCTAGCCACTTCCTTTTCCTCTTCTCATTATTGGTAGTAGTATTTAGTAATTGTCTAGTCTTCTACTCTTCTATATGTGGTACTACTGATTGCTTTATTTGCTTTGTATTGTGCTATTTGATTGTTATATTTTTCTTGCAATCCTACTTCGATAACAATCTAATATTCCTTTTGAGCCGAGGGTCTGTTGGAAACGACCTCTCTATCCCACAAACATAGGGGTAAGGTCTGCGTGCATCTACCCTCCCTGGACCGCACTTGTGCGATTACACTGTGTATGTTGTTGTAATAATTCTTAATTAATTAATCCCTTGTCCTTAATTGGTCATCCCCTTCTCCGTTAACCCAAGAAACGGAGATCTTCATTCATTGTTTACTGCTAGTTTTATAAGATTATGTGTCATATATGTAAGGATAAGATGAAGTGCTAGCGAAGTTATATTGTTCCTTGGATTGTAACTAGCAGCGACAAATGGTTTTGATAATTTTCAAGTCCTAGAAGACTTCTATTGGCTTGTGGATATGCTGTACTTGCACCTAAATACATTTACATTCTACTATATACCGCTTATCATTACTACTATCTCTGATATGCCTTTCTGTTGAAGAAAAGTTAATATTTATTTATGGTATACCTTACTTTCATTTTACTCTCATGTCAAGTTGTGTATTAGGCTTTTAAGAAACTCTTGAACATATATTTCGGATAAAATAATTCCTTCTATTTGTAGCCATCCAGGAAAGAATTTGGCTTGATGGTGAACTACTATGCAAGGAGGGGTGACATGCATCGTGCACGTGAAACC</genome_strand>
        <mrna_strand>TTTTTGAAATATGATGGTCCAAATGCTGAGAAAGCAGCTATGAAGGCAGTGGATTTTGATGGTGTTGAATTTCATGGAAGGGTGTTGACTGTGAAATTGGATGATGGGAGGAGATTGAAAGAGAAAATAGAGGAGAGGAACACGTGGCATGAGGCGAAGGAGGGGCCCGGGAGAGATTTCAAGAAGGTTCTGGCAATACAGCCGGAGAATTGGCAGGCGGTTGTTCGGGCTTTTGAGAGAATCAAGAAGGTGTTATGCTTACTGGAATACTGAAGTAATCTGCTTGCAGTGCTGTAGTCCCTTAAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCCAGGAAAGAATTTGGCTTAATGGTGAACTACTATGCAAGGAGGGGAGACATGCATCGTGCACGTGAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341268" ref_strand="+" ref_description="SGN-U341268        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ccctttaagaaagttaaacatatctctcttgaacaatttatgattattaataagcttaatgtatgagcacatattttcttataacatcacatgcaagtcaaaaccctccagtatacgggcaaatatttttgttaacctcagtaattgtcacattttttcttatatataaagtcagatgcaagtgatgtttctccggtatacagacaagtattttttgttaacctcaataatctaaagtaacatgttggattttcatattcaaagttctaggcattgaaatctctatcatcattatcaaaaagtcatctgatattcatcattcttagatttgagttgtttgcacctaaactttcatatagcatttcaatgaccagcagactctaaagtgatttttaatttaccttatcaaatatacttaatggctaagtctaataacttaacagccaactggtactgaataattgggtaatcaaccacatttaggctttaacctttgctcagtgccttacactgggggagtatctgtactgttcaattcagttgtttcttttctttgaagtgtagccccctgtggcatctaaacaacttagtcctactgcatgctagaaaataagaaacctgaaaaaaaaaactgaatttccatgattggtaagtgaagatgaataatgtctttaatggcgaaaaggaattgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0040B16-UBlzh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0040B16.1" temp_strand="+" temp_description="C04SLm0040B16.1  CU326358.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0040B16 sequenced_by:sanger upload_account_name:uk">
        <position start="118972" stop="120257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119265" g_stop="119957" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0040B16.1" gen_strand="+" ref_id="SGN-U341268" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0040B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119265" e_stop="119957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGTAGAAAGTTAAACATATCTCTCTTGAACAATTTATGATTATTAATAAGCTTAATGTATGAGCACATATTTTCTTATAACATCACATGCAAGTCAAAACCCTCCAGTATACGGGCAAATATTTTTGTTAACCTCAGTAATTGTCACATTTTTTCTTATATATAAAGTCAGATGCAAGTGATGTTTCTCCGGTATACAGACAAGTATTTTTTGTTAACCTCAATAATCTAAAGTAACATGTTGGATTTTCATATTCAAAGTTCTAGGCATTGAAATCTCTATCATCATTATCAAAAAGTCATCTGATATTCATCATTCTTAGATTTGAGTTGTTTGCACCTAAACTTTCATATAGCATTTCAATGACCAGCAGACTCTAAAGTGATTTTTAATTTACCTTATCAAATATACTTAATGGCTAAGTCTAATAACTTAACAGCCAACTGGTACTGAATAATTGGGTAATCAACCACATTTAGGCTTTAACCTTTGCTCAGTGCCTTACACTGGGGGAGTATCTGTACTGTTCAATTCAGTTGTTTCTTTTCTTTGAAGTGTAGCCCCCTATGGCATCTAAACAACTTAGTCCTACTGCATGCTAGAAAATAAGAAACCTGAAAAAAAAAACTGAATTTCCATGATTGGTAAGTGTAGATG-ATAATGTCTTTAAT-GCGGAAAGGAATTGTCTT</genome_strand>
        <mrna_strand>CCCTTTAAGAAAGTTAAACATATCTCTCTTGAACAATTTATGATTATTAATAAGCTTAATGTATGAGCACATATTTTCTTATAACATCACATGCAAGTCAAAACCCTCCAGTATACGGGCAAATATTTTTGTTAACCTCAGTAATTGTCACATTTTTTCTTATATATAAAGTCAGATGCAAGTGATGTTTCTCCGGTATACAGACAAGTATTTTTTGTTAACCTCAATAATCTAAAGTAACATGTTGGATTTTCATATTCAAAGTTCTAGGCATTGAAATCTCTATCATCATTATCAAAAAGTCATCTGATATTCATCATTCTTAGATTTGAGTTGTTTGCACCTAAACTTTCATATAGCATTTCAATGACCAGCAGACTCTAAAGTGATTTTTAATTTACCTTATCAAATATACTTAATGGCTAAGTCTAATAACTTAACAGCCAACTGGTACTGAATAATTGGGTAATCAACCACATTTAGGCTTTAACCTTTGCTCAGTGCCTTACACTGGGGGAGTATCTGTACTGTTCAATTCAGTTGTTTCTTTTCTTTGAAGTGTAGCCCCCTGTGGCATCTAAACAACTTAGTCCTACTGCATGCTAGAAAATAAGAAACCTGAAAAAAAAAACTGAATTTCCATGATTGGTAAGTGAAGATGAATAATGTCTTTAATGGCGAAAAGGAATTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="438" PGL_stop="2392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="438" e_stop="755"/>
            <exon e_start="1332" e_stop="1442"/>
            <exon e_start="1579" e_stop="2392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.896" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="438" e_stop="755" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.896">
            <gDNA_intron_boundary i_start="756" i_stop="1331" i_length="576"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1332" e_stop="1442" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.968">
            <gDNA_intron_boundary i_start="1443" i_stop="1578" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="1579" e_stop="2392" e_length="814"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="438" stop="755"/>
              <exon start="1332" stop="1442"/>
              <exon start="1579" stop="2392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCATTCAATGCCATAGAAAGCAGTGTTATTTCAAATATTATGTCAAAGGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAA : TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG : GTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTTGCGACAAATGACCACATCTTTAATGGCTTCCAGCACAATAGCTTGGACGATATCCATCGTGGTAATGAAGTGGACAACATGACACAACACCAGTCAAATGATTCATTAGGTTTCAAAAAATTCTATGCTGGATATGGAGATGTGATGTTCCAGACGCCCCGGTCTGGCGATGTATACACCAGAGTATTTGGGATGTAACACACAAGACACTTTACTAAAATGAAATTGTCCCCAACTATTTTGTGTTGTTTGCAGAAAATTATAAATATGTTACCAGTTAATTACACATACTTGCCTGGTGTTGGCTTTTTTTCAAGTTGAGGTGTGGAGCCAATTATTTGTTTCTCATTTTCCAATCATCCATTAGCTGATTAAAAAATCACATTTATCTC</gDNA_template>
            <first_frame> L  H  S  M  P  *  K  A  V  L  F  Q  I  L  C  Q  R  T  *  I  H  V  M  I  Q  W  P  C  V  V  V  L  L  A  R  M  V  S  L  L  G  S  M  V  L  P  G  T  L  C  T  A  T  N  *  G  S  L  L  *  S  K  M  T  F  P  G  K  E  V  I  W  S  R  L  L  E  I  L  V  R  Y  Q  R  I  R  P  S  F  R  I  S  E  K  T  R  I  S  M  *  T  R  L  P  I  K  :  S  P  D  Q  K  F  R  L  H  L  G  S  Q  C  P  Q  G  T  C  L  T  V  L  P  H  L  M  I  *  E  E  C  L  V  L  F  L  :  V  V  V  *  *  I  V  H  Q  V  C  F  T  H  H  Q  P  E  A  L  A  V  L  V  I  S  I  L  L  T  L  P  H  Q  S  L  E  M  A  N  Q  Q  M  V  L  I  Y  Q  P  W  R  S  G  Q  L  V  C  H  R  G  E  G  L  K  T  K  Q  E  S  G  I  L  C  N  K  N  L  *  I  K  G  N  S  L  N  E  L  L  L  K  H  H  P  C  I  S  H  E  G  I  L  A  M  A  E  M  S  I  L  A  W  M  I  Y  M  A  S  H  Q  G  W  W  I  N  T  K  V  S  I  H  L  P  I  H  N  F  H  S  R  S  L  R  Q  M  T  T  S  L  M  A  S  S  T  I  A  W  T  I  S  I  V  V  M  K  W  T  T  *  H  N  T  S  Q  M  I  H  *  V  S  K  N  S  M  L  D  M  E  M  *  C  S  R  R  P  G  L  A  M  Y  T  P  E  Y  L  G  C  N  T  Q  D  T  L  L  K  *  N  C  P  Q  L  F  C  V  V  C  R  K  L  *  I  C  Y  Q  L  I  T  H  T  C  L  V  L  A  F  F  Q  V  E  V  W  S  Q  L  F  V  S  H  F  P  I  I  H  *  L  I  K  K  S  H  L  S  </first_frame>
            <second_frame>  F  I  Q  C  H  R  K  Q  C  Y  F  K  Y  Y  V  K  G  L  E  F  M  *  *  F  N  G  L  A  S  *  F  C  W  L  V  W  *  V  C  W  E  A  W  C  F  L  E  L  F  A  Q  R  P  I  R  V  L  F  C  E  A  R  *  L  F  L  A  R  R  *  F  G  V  V  F  *  K  Y  W  S  D  I  K  E  F  V  H  P  S  G  F  R  R  K  Q  G  S  V  C  E  Q  G  S  L  S  N :   H  Q  T  K  S  F  G  S  T  W  V  L  N  A  P  K  G  P  A  S  R  F  C  L  I  *  *  Y  R  R  N  A  S  F  S  F  W :   *  S  F  S  K  *  F  I  K  F  A  S  H  T  I  N  R  K  H  *  Q  C  W  *  Y  R  F  C  *  P  C  H  I  S  L  W  K  W  Q  T  N  K  W  F  *  Y  I  S  L  G  D  R  V  S  L  C  A  T  E  E  R  V  *  R  R  S  K  N  L  A  S  Y  A  T  K  T  F  R  S  R  E  I  L  S  T  N  C  F  S  N  T  I  H  A  S  V  T  K  A  S  *  P  W  R  R  *  V  S  W  P  G  *  Y  I  W  L  L  I  K  D  G  G  S  T  P  K  F  Q  F  I  F  L  F  T  I  S  T  A  E  A  C  D  K  *  P  H  L  *  W  L  P  A  Q  *  L  G  R  Y  P  S  W  *  *  S  G  Q  H  D  T  T  P  V  K  *  F  I  R  F  Q  K  I  L  C  W  I  W  R  C  D  V  P  D  A  P  V  W  R  C  I  H  Q  S  I  W  D  V  T  H  K  T  L  Y  *  N  E  I  V  P  N  Y  F  V  L  F  A  E  N  Y  K  Y  V  T  S  *  L  H  I  L  A  W  C  W  L  F  F  K  L  R  C  G  A  N  Y  L  F  L  I  F  Q  S  S  I  S  *  L  K  N  H  I  Y  L </second_frame>
            <third_frame>   S  F  N  A  I  E  S  S  V  I  S  N  I  M  S  K  D  L  N  S  C  D  D  S  M  A  L  R  R  S  F  V  G  S  Y  G  E  S  V  G  K  H  G  A  S  W  N  S  L  H  S  D  Q  L  G  F  S  F  V  K  Q  D  D  F  S  W  Q  G  G  D  L  E  S  S  F  R  N  I  G  Q  I  S  K  N  S  S  I  L  Q  D  F  G  E  N  K  D  Q  Y  V  N  K  A  P  Y  Q   : I  T  R  P  K  V  S  A  P  P  G  F  S  M  P  P  R  D  L  P  H  G  F  A  S  S  D  D  I  G  G  M  P  R  S  L  S   : G  S  R  L  V  N  S  S  S  S  L  L  H  T  P  S  T  G  S  I  S  S  A  G  D  I  D  F  V  D  P  A  T  S  V  F  G  N  G  K  P  T  N  G  F  D  I  S  A  L  E  I  G  S  A  C  V  P  Q  R  R  G  F  E  D  E  A  R  I  W  H  L  M  Q  Q  K  P  L  D  Q  G  K  F  S  Q  R  I  A  S  Q  T  P  S  M  H  Q  S  R  R  H  P  S  H  G  G  D  E  Y  L  G  L  D  D  I  Y  G  F  S  S  R  M  V  D  Q  H  Q  S  F  N  S  S  S  Y  S  Q  F  P  Q  Q  K  L  A  T  N  D  H  I  F  N  G  F  Q  H  N  S  L  D  D  I  H  R  G  N  E  V  D  N  M  T  Q  H  Q  S  N  D  S  L  G  F  K  K  F  Y  A  G  Y  G  D  V  M  F  Q  T  P  R  S  G  D  V  Y  T  R  V  F  G  M  *  H  T  R  H  F  T  K  M  K  L  S  P  T  I  L  C  C  L  Q  K  I  I  N  M  L  P  V  N  Y  T  Y  L  P  G  V  G  F  F  S  S  *  G  V  E  P  I  I  C  F  S  F  S  N  H  P  L  A  D  *  K  I  T  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="440" stop="755"/>
                    <exon start="1332" stop="1442"/>
                    <exon start="1579" stop="2198"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFNAIESSVISNIMSKDLNSCDDSMALRRSFVGSYGESVGKHGASWNSLHSDQLGFSFVKQDDFSWQGGDLESSFRNIGQISKNSSILQDFGENKDQYVNKAPYQITRPKVSAPPGFSMPPRDLPHGFASSDDIGGMPRSLSGSRLVNSSSSLLHTPSTGSISSAGDIDFVDPATSVFGNGKPTNGFDISALEIGSACVPQRRGFEDEARIWHLMQQKPLDQGKFSQRIASQTPSMHQSRRHPSHGGDEYLGLDDIYGFSSRMVDQHQSFNSSSYSQFPQQKLATNDHIFNGFQHNSLDDIHRGNEVDNMTQHQSNDSLGFKKFYAGYGDVMFQTPRSGDVYTRVFGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8447" PGL_stop="7799"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8447" e_stop="8400"/>
            <exon e_start="8160" e_stop="7799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8447" e_stop="8400" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.973">
            <gDNA_intron_boundary i_start="8399" i_stop="8161" i_length="239"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="8160" e_stop="7799" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8447" stop="8400"/>
              <exon start="8160" stop="7799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340122" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACGTGACCCAAAGGAGCACCTGGAGAACTATAAAAGACGTTTCTTG : TCTCAGCTCTGATGAGCATTACACAGTATCCACAATTATGCAATGATCACTGCTGAGTTCTGAACAGTTTATATGTGCAGGGGGCTGTCTTTTTCATTGTATTAGAATATGATTAATCTCAGCAGAAAATTCCACATATGGAATATATAGCTGCACAGTGAAGTTGTTTCCATATGATCTATATATACCTTACAGATTTGAGCCGTATAAGCAGCATTAGAGTAGACTGTCTACCTCACAATTCTTCATGTGTGGCCCTTTTCCTAAACCCTACTAAAAGGGGATGCTTTGTGCACCGGGATGCCCTTTAGAAATATGCAGCTGCACAGTAACTATTTCTAATCATAAAACACCAGGAATAT</gDNA_template>
            <first_frame> K  R  D  P  K  E  H  L  E  N  Y  K  R  R  F  L  :  S  Q  L  *  *  A  L  H  S  I  H  N  Y  A  M  I  T  A  E  F  *  T  V  Y  M  C  R  G  L  S  F  S  L  Y  *  N  M  I  N  L  S  R  K  F  H  I  W  N  I  *  L  H  S  E  V  V  S  I  *  S  I  Y  T  L  Q  I  *  A  V  *  A  A  L  E  *  T  V  Y  L  T  I  L  H  V  W  P  F  S  *  T  L  L  K  G  D  A  L  C  T  G  M  P  F  R  N  M  Q  L  H  S  N  Y  F  *  S  *  N  T  R  N   </first_frame>
            <second_frame>  N  V  T  Q  R  S  T  W  R  T  I  K  D  V  S  C :   L  S  S  D  E  H  Y  T  V  S  T  I  M  Q  *  S  L  L  S  S  E  Q  F  I  C  A  G  G  C  L  F  H  C  I  R  I  *  L  I  S  A  E  N  S  T  Y  G  I  Y  S  C  T  V  K  L  F  P  Y  D  L  Y  I  P  Y  R  F  E  P  Y  K  Q  H  *  S  R  L  S  T  S  Q  F  F  M  C  G  P  F  P  K  P  Y  *  K  G  M  L  C  A  P  G  C  P  L  E  I  C  S  C  T  V  T  I  S  N  H  K  T  P  G  I  </second_frame>
            <third_frame>   T  *  P  K  G  A  P  G  E  L  *  K  T  F  L   : V  S  A  L  M  S  I  T  Q  Y  P  Q  L  C  N  D  H  C  *  V  L  N  S  L  Y  V  Q  G  A  V  F  F  I  V  L  E  Y  D  *  S  Q  Q  K  I  P  H  M  E  Y  I  A  A  Q  *  S  C  F  H  M  I  Y  I  Y  L  T  D  L  S  R  I  S  S  I  R  V  D  C  L  P  H  N  S  S  C  V  A  L  F  L  N  P  T  K  R  G  C  F  V  H  R  D  A  L  *  K  Y  A  A  A  Q  *  L  F  L  I  I  K  H  Q  E  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13147" PGL_stop="9780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13147" e_stop="12868"/>
            <exon e_start="12079" e_stop="12005"/>
            <exon e_start="11407" e_stop="11347"/>
            <exon e_start="11238" e_stop="11152"/>
            <exon e_start="10147" e_stop="10049"/>
            <exon e_start="9973" e_stop="9871"/>
            <exon e_start="9800" e_stop="9780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.292" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13147" e_stop="12868" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.960">
            <gDNA_intron_boundary i_start="12867" i_stop="12080" i_length="788"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12079" e_stop="12005" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="12004" i_stop="11408" i_length="597"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11407" e_stop="11347" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.843" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11346" i_stop="11239" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11238" e_stop="11152" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.292" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11151" i_stop="10148" i_length="1004"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10147" e_stop="10049" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.866">
            <gDNA_intron_boundary i_start="10048" i_stop="9974" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="9973" e_stop="9871" e_length="103"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9870" i_stop="9801" i_length="70"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9800" e_stop="9780" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13147" stop="12868"/>
              <exon start="12079" stop="12005"/>
              <exon start="11407" stop="11347"/>
              <exon start="11238" stop="11152"/>
              <exon start="10147" stop="10049"/>
              <exon start="9973" stop="9871"/>
              <exon start="9800" stop="9780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324826" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAAAGAAGAAAAACACAGTTCTGCCAGAGAGAGGGGAGAGATAAGGAGTACAACGCATTAACGAACCAAATCACCAAAACCTAAAGGAGAAAAATGGCAGCTTCGAGCATTGGGCATCAGATTCATATTAATGTCAATTCTCCAATTCTTCTTCCTTTGAGAACCAATTTCAGTTCACTCTCTTTCACTTTCTCTAATGCTAGATACCCATTAAAATGGAATCACATTGGTTGCCCCAAAATTTGTGCTCTACCAGCTGTTTCAATAATTGCTTCTGG : AAGTTCTAGAGAGATGCTTCCTCCTGCCCTTGATTCCTCTTCAGAGCCACCAGCAATCTTTGATGGAACTCCAAA : GCTTTATATCTCTTACTCATGCCCATATGCCCAACGTACGTGGATTGCTAGAAATTGTAAG : GCGCTGCAGGAAGAGATTAAGTTGGTTCCTATTGATCTAAAGAACAGGCCAGATTGGTATAAGGAGAAGGTTTATCCAGCAAATAAG : GTACCATCACTGGAACACAACAATGAAGTTAAGGGAGAGAGTATGGATCTCATTAGATATATTGACAGTAACTTTGAAGGGCCATCACTTTTCCCTGAT : GATCCTTCCAAGAGAGAATTCGCAGAAGAATTATTCTCCTACTTTGACTCCTTTTACAAAGCTGTAATTTCGTCTTTAAAGGAAGACAAAATAAATGATGCCA : TTGCAGCATTTGATTCCATTG</gDNA_template>
            <first_frame> *  K  E  E  K  H  S  S  A  R  E  R  G  E  I  R  S  T  T  H  *  R  T  K  S  P  K  P  K  G  E  K  W  Q  L  R  A  L  G  I  R  F  I  L  M  S  I  L  Q  F  F  F  L  *  E  P  I  S  V  H  S  L  S  L  S  L  M  L  D  T  H  *  N  G  I  T  L  V  A  P  K  F  V  L  Y  Q  L  F  Q  *  L  L  L   : E  V  L  E  R  C  F  L  L  P  L  I  P  L  Q  S  H  Q  Q  S  L  M  E  L  Q   : S  F  I  S  L  T  H  A  H  M  P  N  V  R  G  L  L  E  I  V  R :   R  C  R  K  R  L  S  W  F  L  L  I  *  R  T  G  Q  I  G  I  R  R  R  F  I  Q  Q  I  R :   Y  H  H  W  N  T  T  M  K  L  R  E  R  V  W  I  S  L  D  I  L  T  V  T  L  K  G  H  H  F  S  L  M :   I  L  P  R  E  N  S  Q  K  N  Y  S  P  T  L  T  P  F  T  K  L  *  F  R  L  *  R  K  T  K  *  M  M  P  :  L  Q  H  L  I  P  L </first_frame>
            <second_frame>  R  K  K  K  N  T  V  L  P  E  R  G  E  R  *  G  V  Q  R  I  N  E  P  N  H  Q  N  L  K  E  K  N  G  S  F  E  H  W  A  S  D  S  Y  *  C  Q  F  S  N  S  S  S  F  E  N  Q  F  Q  F  T  L  F  H  F  L  *  C  *  I  P  I  K  M  E  S  H  W  L  P  Q  N  L  C  S  T  S  C  F  N  N  C  F  W  :  K  F  *  R  D  A  S  S  C  P  *  F  L  F  R  A  T  S  N  L  *  W  N  S  K  :  A  L  Y  L  L  L  M  P  I  C  P  T  Y  V  D  C  *  K  L  *   : G  A  A  G  R  D  *  V  G  S  Y  *  S  K  E  Q  A  R  L  V  *  G  E  G  L  S  S  K  *   : G  T  I  T  G  T  Q  Q  *  S  *  G  R  E  Y  G  S  H  *  I  Y  *  Q  *  L  *  R  A  I  T  F  P  *   : *  S  F  Q  E  R  I  R  R  R  I  I  L  L  L  *  L  L  L  Q  S  C  N  F  V  F  K  G  R  Q  N  K  *  C  H :   C  S  I  *  F  H   </second_frame>
            <third_frame>   E  R  R  K  T  Q  F  C  Q  R  E  G  R  D  K  E  Y  N  A  L  T  N  Q  I  T  K  T  *  R  R  K  M  A  A  S  S  I  G  H  Q  I  H  I  N  V  N  S  P  I  L  L  P  L  R  T  N  F  S  S  L  S  F  T  F  S  N  A  R  Y  P  L  K  W  N  H  I  G  C  P  K  I  C  A  L  P  A  V  S  I  I  A  S  G :   S  S  R  E  M  L  P  P  A  L  D  S  S  S  E  P  P  A  I  F  D  G  T  P  K :   L  Y  I  S  Y  S  C  P  Y  A  Q  R  T  W  I  A  R  N  C  K  :  A  L  Q  E  E  I  K  L  V  P  I  D  L  K  N  R  P  D  W  Y  K  E  K  V  Y  P  A  N  K  :  V  P  S  L  E  H  N  N  E  V  K  G  E  S  M  D  L  I  R  Y  I  D  S  N  F  E  G  P  S  L  F  P  D  :  D  P  S  K  R  E  F  A  E  E  L  F  S  Y  F  D  S  F  Y  K  A  V  I  S  S  L  K  E  D  K  I  N  D  A   : I  A  A  F  D  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13061" stop="12868"/>
                    <exon start="12079" stop="12005"/>
                    <exon start="11407" stop="11347"/>
                    <exon start="11238" stop="11152"/>
                    <exon start="10147" stop="10049"/>
                    <exon start="9973" stop="9871"/>
                    <exon start="9800" stop="9781"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRKMAASSIGHQIHINVNSPILLPLRTNFSSLSFTFSNARYPLKWNHIGCPKICALPAVSIIASGSSREMLPPALDSSSEPPAIFDGTPKLYISYSCPYAQRTWIARNCKALQEEIKLVPIDLKNRPDWYKEKVYPANKVPSLEHNNEVKGESMDLIRYIDSNFEGPSLFPDDPSKREFAEELFSYFDSFYKAVISSLKEDKINDAIAAFDSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="14969" PGL_stop="15879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14969" e_stop="15879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="14969" e_stop="15879" e_length="911"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14969" stop="15879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317911" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGCACAAAAGATAAGGCAATCCAATTCTCAAGCTATCATCAATGGAGGCTGCTCTCTTCAGCTTACCTTCCTCTTCCTCTCACTCTTACCCATTTTCCGTGAAATCCCACTTCAACAATCCCTTCATAATCCCCCATTCCAGTTCTCACCTCAAACTCAAACCCAGAACTCTAACTATTCGTTCAGCCATTAGCAGAACCAAGAAAGAAGAAACAGTCGAAACAGTGAAGCAACAGCTTGAAGATTGTTATCTCTTAGCTGGAATCAGTTACAAGGGGTTAACAGTTAAGCAATTTCAAGATCTTAGGGCTCAACTCCCAGAAACAACAAAGCTTCTTGTTGCTAAGAACACATTGGTACTTAAAGCAATTGAAGGGACAAAATGGGAAGCATTGAAACCATGTATGAAGGGAATGAATGCTTGGTTATTTGTTCATAGTGAAGAAATCCCAGCTGCTTTGAAACCTTATAGGACTTTTCTAAGGGAGAAGAAATTGGAAGATAATGATTTTACTGGTGGGGTTTTTGAAGGGAAGTTTTATGGGCCTGATGAGTTTAAGGTGCTTGAGAATTTGCCTACAAGAGCTGAGATTTATTCACAGCTTCTTGGGTCTTTGAAAGGACCTGCTTCAGCTGTTGTTGGGACTATTCAAGCTCCAGCAAGGAATTTGGTTATGGTTCTTAAGGCTTATGTAAAGAAATTGGAGGAGGAAGAAGGTGGAAGTCAATAATTTTTGTTGTAATTCTTGGATATGGTAAGCTAATACTATTGTCTATTTGGATCAATATTTGAAATTTTTCTGAGAGATGGAATTTTGTAAATTTTATGTTTTTGGTAGAATGAATTTATCCTTGGCCAATTGTTCTAAATTTGTGTCCTCGTATTTGGCGGATAATTATCTGGATTAC</gDNA_template>
            <first_frame> L  A  Q  K  I  R  Q  S  N  S  Q  A  I  I  N  G  G  C  S  L  Q  L  T  F  L  F  L  S  L  L  P  I  F  R  E  I  P  L  Q  Q  S  L  H  N  P  P  F  Q  F  S  P  Q  T  Q  T  Q  N  S  N  Y  S  F  S  H  *  Q  N  Q  E  R  R  N  S  R  N  S  E  A  T  A  *  R  L  L  S  L  S  W  N  Q  L  Q  G  V  N  S  *  A  I  S  R  S  *  G  S  T  P  R  N  N  K  A  S  C  C  *  E  H  I  G  T  *  S  N  *  R  D  K  M  G  S  I  E  T  M  Y  E  G  N  E  C  L  V  I  C  S  *  *  R  N  P  S  C  F  E  T  L  *  D  F  S  K  G  E  E  I  G  R  *  *  F  Y  W  W  G  F  *  R  E  V  L  W  A  *  *  V  *  G  A  *  E  F  A  Y  K  S  *  D  L  F  T  A  S  W  V  F  E  R  T  C  F  S  C  C  W  D  Y  S  S  S  S  K  E  F  G  Y  G  S  *  G  L  C  K  E  I  G  G  G  R  R  W  K  S  I  I  F  V  V  I  L  G  Y  G  K  L  I  L  L  S  I  W  I  N  I  *  N  F  S  E  R  W  N  F  V  N  F  M  F  L  V  E  *  I  Y  P  W  P  I  V  L  N  L  C  P  R  I  W  R  I  I  I  W  I   </first_frame>
            <second_frame>  *  H  K  R  *  G  N  P  I  L  K  L  S  S  M  E  A  A  L  F  S  L  P  S  S  S  S  H  S  Y  P  F  S  V  K  S  H  F  N  N  P  F  I  I  P  H  S  S  S  H  L  K  L  K  P  R  T  L  T  I  R  S  A  I  S  R  T  K  K  E  E  T  V  E  T  V  K  Q  Q  L  E  D  C  Y  L  L  A  G  I  S  Y  K  G  L  T  V  K  Q  F  Q  D  L  R  A  Q  L  P  E  T  T  K  L  L  V  A  K  N  T  L  V  L  K  A  I  E  G  T  K  W  E  A  L  K  P  C  M  K  G  M  N  A  W  L  F  V  H  S  E  E  I  P  A  A  L  K  P  Y  R  T  F  L  R  E  K  K  L  E  D  N  D  F  T  G  G  V  F  E  G  K  F  Y  G  P  D  E  F  K  V  L  E  N  L  P  T  R  A  E  I  Y  S  Q  L  L  G  S  L  K  G  P  A  S  A  V  V  G  T  I  Q  A  P  A  R  N  L  V  M  V  L  K  A  Y  V  K  K  L  E  E  E  E  G  G  S  Q  *  F  L  L  *  F  L  D  M  V  S  *  Y  Y  C  L  F  G  S  I  F  E  I  F  L  R  D  G  I  L  *  I  L  C  F  W  *  N  E  F  I  L  G  Q  L  F  *  I  C  V  L  V  F  G  G  *  L  S  G  L  </second_frame>
            <third_frame>   S  T  K  D  K  A  I  Q  F  S  S  Y  H  Q  W  R  L  L  S  S  A  Y  L  P  L  P  L  T  L  T  H  F  P  *  N  P  T  S  T  I  P  S  *  S  P  I  P  V  L  T  S  N  S  N  P  E  L  *  L  F  V  Q  P  L  A  E  P  R  K  K  K  Q  S  K  Q  *  S  N  S  L  K  I  V  I  S  *  L  E  S  V  T  R  G  *  Q  L  S  N  F  K  I  L  G  L  N  S  Q  K  Q  Q  S  F  L  L  L  R  T  H  W  Y  L  K  Q  L  K  G  Q  N  G  K  H  *  N  H  V  *  R  E  *  M  L  G  Y  L  F  I  V  K  K  S  Q  L  L  *  N  L  I  G  L  F  *  G  R  R  N  W  K  I  M  I  L  L  V  G  F  L  K  G  S  F  M  G  L  M  S  L  R  C  L  R  I  C  L  Q  E  L  R  F  I  H  S  F  L  G  L  *  K  D  L  L  Q  L  L  L  G  L  F  K  L  Q  Q  G  I  W  L  W  F  L  R  L  M  *  R  N  W  R  R  K  K  V  E  V  N  N  F  C  C  N  S  W  I  W  *  A  N  T  I  V  Y  L  D  Q  Y  L  K  F  F  *  E  M  E  F  C  K  F  Y  V  F  G  R  M  N  L  S  L  A  N  C  S  K  F  V  S  S  Y  L  A  D  N  Y  L  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14985" stop="15701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNPILKLSSMEAALFSLPSSSSHSYPFSVKSHFNNPFIIPHSSSHLKLKPRTLTIRSAISRTKKEETVETVKQQLEDCYLLAGISYKGLTVKQFQDLRAQLPETTKLLVAKNTLVLKAIEGTKWEALKPCMKGMNAWLFVHSEEIPAALKPYRTFLREKKLEDNDFTGGVFEGKFYGPDEFKVLENLPTRAEIYSQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEEGGSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="20019" PGL_stop="24455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20019" e_stop="20257"/>
            <exon e_start="21340" e_stop="21472"/>
            <exon e_start="22707" e_stop="22795"/>
            <exon e_start="22900" e_stop="23022"/>
            <exon e_start="23333" e_stop="23439"/>
            <exon e_start="23519" e_stop="23544"/>
            <exon e_start="23630" e_stop="23786"/>
            <exon e_start="24240" e_stop="24455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.979"/>
          <exon-intron don_prob="0.993" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="20019" e_stop="20257" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20258" i_stop="21339" i_length="1082"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21340" e_stop="21472" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.958">
            <gDNA_intron_boundary i_start="21473" i_stop="22706" i_length="1234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22707" e_stop="22795" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22796" i_stop="22899" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22900" e_stop="23022" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23023" i_stop="23332" i_length="310"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23333" e_stop="23439" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.950">
            <gDNA_intron_boundary i_start="23440" i_stop="23518" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23519" e_stop="23544" e_length="26"/>
          </exon>
          <intron i_serial="6" don_prob="0.633" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23545" i_stop="23629" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23630" e_stop="23786" e_length="157"/>
          </exon>
          <intron i_serial="7" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23787" i_stop="24239" i_length="453"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24240" e_stop="24455" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20019" stop="20257"/>
              <exon start="21340" stop="21472"/>
              <exon start="22707" stop="22795"/>
              <exon start="22900" stop="23022"/>
              <exon start="23333" stop="23439"/>
              <exon start="23519" stop="23544"/>
              <exon start="23630" stop="23786"/>
              <exon start="24240" stop="24455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGCAAAAACGAAACTTGTCTTCTCCGAGAAGAGAAGAGAAAAAAAGCCATTCGAATACAGCAGAGAAGCAAAGAGCGAGCATTTCTGCTTCTATCAAACTGTACGAAGCCTCTCAAAGCAACAGCAGCAGCAGAAGAAGAATCTGAAGAAATGGACGATTACACTAGAGAAATGATGGACCTCAAAACCCTCGTTACACGAACCCTAGAGAAGAAAGGCGTTCTCGCTAAGATCCGA : GCTGAACTTAGAGCAAGCGTTTTTGAGGCAATTGAAGATGAGGATAGGGTAATTGAGAAGGATGAAACCTTGCCCCCTGCGCTATTGGGTAGCTGCAATGATCAGGCAAAACAACTCCATAATTCACCTTCAG : GAAGGTTACTAACTGCACTTGTATGTGAATATTTGGATTGGGCTCAATTAAACCACACATTTAAGGTGTATTTGCCAGAGTGTAACTTG : CCAAAGGAGTCGTGGAAATCTGAGCTAAAAGAATTTAGCAGCAAGAATGGGTATGATCTTAACAGGAATGGTGACAGTGCTCCGTTGCTTTTGGATGTTCTTGAAGGATTCTTGAAATACGAG : AACTTCTCTCAAGCAAAGGGTGCTGGATCTCTGTCCAACACTGAAGCTAGGAATGTTAGGAAGCCTTCTTCATCTTCAGTTGCCGGGGGCTTACCACCGTTAGGAAG : GCCAGGTCCTGCTGCCCAGTCATCTG : ACAGAAGGGCAGGTTCATCTGTATCCGGATATAGGAAAGATGAATACAACTGGAGATATGAAAATGAAGAGCTTTCGCAAGATGTAATGCTTGCCTCATCTGCCTTAGAAAACCTTCAATTGGACAGAAAAGCTCGGAACCTTGCCACTTCATGGCG : GCATAGAGGTGATGGCATTTCTGAGAATGATGGCAGGATGGAATAAGATTGAGATTATATCATCTCGAAATCACTAATTATATGGGAATTGATGATATCCTTCAACGTAGAAATGCAATGTTCTAATGTACGCTATGTATGATTTAATACACAATATTGCTTGTAGTAATTCGTGTGTGCTTCTCATTTTCCTGTAGTAATTCGTGTGTGCTTCTC</gDNA_template>
            <first_frame> R  A  K  T  K  L  V  F  S  E  K  R  R  E  K  K  P  F  E  Y  S  R  E  A  K  S  E  H  F  C  F  Y  Q  T  V  R  S  L  S  K  Q  Q  Q  Q  Q  K  K  N  L  K  K  W  T  I  T  L  E  K  *  W  T  S  K  P  S  L  H  E  P  *  R  R  K  A  F  S  L  R  S  E :   L  N  L  E  Q  A  F  L  R  Q  L  K  M  R  I  G  *  L  R  R  M  K  P  C  P  L  R  Y  W  V  A  A  M  I  R  Q  N  N  S  I  I  H  L  Q  :  E  G  Y  *  L  H  L  Y  V  N  I  W  I  G  L  N  *  T  T  H  L  R  C  I  C  Q  S  V  T  C :   Q  R  S  R  G  N  L  S  *  K  N  L  A  A  R  M  G  M  I  L  T  G  M  V  T  V  L  R  C  F  W  M  F  L  K  D  S  *  N  T  R :   T  S  L  K  Q  R  V  L  D  L  C  P  T  L  K  L  G  M  L  G  S  L  L  H  L  Q  L  P  G  A  Y  H  R  *  E   : G  Q  V  L  L  P  S  H  L  :  T  E  G  Q  V  H  L  Y  P  D  I  G  K  M  N  T  T  G  D  M  K  M  K  S  F  R  K  M  *  C  L  P  H  L  P  *  K  T  F  N  W  T  E  K  L  G  T  L  P  L  H  G   : G  I  E  V  M  A  F  L  R  M  M  A  G  W  N  K  I  E  I  I  S  S  R  N  H  *  L  Y  G  N  *  *  Y  P  S  T  *  K  C  N  V  L  M  Y  A  M  Y  D  L  I  H  N  I  A  C  S  N  S  C  V  L  L  I  F  L  *  *  F  V  C  A  S  </first_frame>
            <second_frame>  G  Q  K  R  N  L  S  S  P  R  R  E  E  K  K  S  H  S  N  T  A  E  K  Q  R  A  S  I  S  A  S  I  K  L  Y  E  A  S  Q  S  N  S  S  S  R  R  R  I  *  R  N  G  R  L  H  *  R  N  D  G  P  Q  N  P  R  Y  T  N  P  R  E  E  R  R  S  R  *  D  P   : S  *  T  *  S  K  R  F  *  G  N  *  R  *  G  *  G  N  *  E  G  *  N  L  A  P  C  A  I  G  *  L  Q  *  S  G  K  T  T  P  *  F  T  F  R :   K  V  T  N  C  T  C  M  *  I  F  G  L  G  S  I  K  P  H  I  *  G  V  F  A  R  V  *  L   : A  K  G  V  V  E  I  *  A  K  R  I  *  Q  Q  E  W  V  *  S  *  Q  E  W  *  Q  C  S  V  A  F  G  C  S  *  R  I  L  E  I  R   : E  L  L  S  S  K  G  C  W  I  S  V  Q  H  *  S  *  E  C  *  E  A  F  F  I  F  S  C  R  G  L  T  T  V  R  K  :  A  R  S  C  C  P  V  I  * :   Q  K  G  R  F  I  C  I  R  I  *  E  R  *  I  Q  L  E  I  *  K  *  R  A  F  A  R  C  N  A  C  L  I  C  L  R  K  P  S  I  G  Q  K  S  S  E  P  C  H  F  M  A  :  A  *  R  *  W  H  F  *  E  *  W  Q  D  G  I  R  L  R  L  Y  H  L  E  I  T  N  Y  M  G  I  D  D  I  L  Q  R  R  N  A  M  F  *  C  T  L  C  M  I  *  Y  T  I  L  L  V  V  I  R  V  C  F  S  F  S  C  S  N  S  C  V  L  L </second_frame>
            <third_frame>   G  K  N  E  T  C  L  L  R  E  E  K  R  K  K  A  I  R  I  Q  Q  R  S  K  E  R  A  F  L  L  L  S  N  C  T  K  P  L  K  A  T  A  A  A  E  E  E  S  E  E  M  D  D  Y  T  R  E  M  M  D  L  K  T  L  V  T  R  T  L  E  K  K  G  V  L  A  K  I  R  :  A  E  L  R  A  S  V  F  E  A  I  E  D  E  D  R  V  I  E  K  D  E  T  L  P  P  A  L  L  G  S  C  N  D  Q  A  K  Q  L  H  N  S  P  S   : G  R  L  L  T  A  L  V  C  E  Y  L  D  W  A  Q  L  N  H  T  F  K  V  Y  L  P  E  C  N  L  :  P  K  E  S  W  K  S  E  L  K  E  F  S  S  K  N  G  Y  D  L  N  R  N  G  D  S  A  P  L  L  L  D  V  L  E  G  F  L  K  Y  E  :  N  F  S  Q  A  K  G  A  G  S  L  S  N  T  E  A  R  N  V  R  K  P  S  S  S  S  V  A  G  G  L  P  P  L  G  R :   P  G  P  A  A  Q  S  S   : D  R  R  A  G  S  S  V  S  G  Y  R  K  D  E  Y  N  W  R  Y  E  N  E  E  L  S  Q  D  V  M  L  A  S  S  A  L  E  N  L  Q  L  D  R  K  A  R  N  L  A  T  S  W  R :   H  R  G  D  G  I  S  E  N  D  G  R  M  E  *  D  *  D  Y  I  I  S  K  S  L  I  I  W  E  L  M  I  S  F  N  V  E  M  Q  C  S  N  V  R  Y  V  *  F  N  T  Q  Y  C  L  *  *  F  V  C  A  S  H  F  P  V  V  I  R  V  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20021" stop="20257"/>
                    <exon start="21340" stop="21472"/>
                    <exon start="22707" stop="22795"/>
                    <exon start="22900" stop="23022"/>
                    <exon start="23333" stop="23439"/>
                    <exon start="23519" stop="23544"/>
                    <exon start="23630" stop="23786"/>
                    <exon start="24240" stop="24285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKNETCLLREEKRKKAIRIQQRSKERAFLLLSNCTKPLKATAAAEEESEEMDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEDEDRVIEKDETLPPALLGSCNDQAKQLHNSPSGRLLTALVCEYLDWAQLNHTFKVYLPECNLPKESWKSELKEFSSKNGYDLNRNGDSAPLLLDVLEGFLKYENFSQAKGAGSLSNTEARNVRKPSSSSVAGGLPPLGRPGPAAQSSDRRAGSSVSGYRKDEYNWRYENEELSQDVMLASSALENLQLDRKARNLATSWRHRGDGISENDGRME*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="38170" PGL_stop="36212"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38170" e_stop="37659"/>
            <exon e_start="36566" e_stop="36212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38170" e_stop="37659" e_length="512"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37658" i_stop="36567" i_length="1092"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="36566" e_stop="36212" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38170" stop="37659"/>
              <exon start="36566" stop="36212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319897" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAGTTCACCTCTACCGCTGCCGATTAAATCACTGTAATTCAATTTCTTCACTTAGGTTACGTTTTCATTTTTTTGTTCGATTTCTTGTTTCTTAATGAATGTGATAATTTCTATCGATTCGTGTTACAAAATATTTGTGTTTTGTTGTTGTTGCTTTTTTTTTTTGTAAGCTTATAAACAATATGATGTTATGAATTCGATATGGTAATTTGTGCGTTGTTGTTGTTCTTGTTATTTTCGGAACTGTTTACTTTTACATTCAAATTGAATCACTGTACGATCATATATTGATTCTCTACTTGATTAATTGCAAGGTTTTAAGCAATCTCACAATAAAAGAAACGAATTGATCCCCAGAATGGCGTTAACGAACTTTATACTGACAGTTGCGGGAGTGAGCGCTGTGGTTTTATTGATGAGGAGCGATGTTAAACAGTCTGCTTCCATCTTCAAGCGCAATGTTCGTCAAATTCGCCATTGGCTTGAGGAAGAGTCTGCTTCCGCGGCTAA : GGGAATAGAGAAGGCAAAGCCGAAGGAGATATCTCAGAAGGACATCCCCAAAGACGACAAACACTAGATTTGACTCATACTTATCAGATGCCTTGCGATTTCCCAGCTACCATTTCAGATTTTGTTCCATAACATGTGACTAATTTAGACTCCCCATTAGTGTAAGTATCCTGTTAAATATACTTTTACCATTTTTGGTATTGGCAAAATGAGCTATTTTCACATACTGTGTCACCATAGAGCTTTCAAAATACTAGTAATTGACATGACTGAACTCTCTTGTAAGTTGTAATAATCATGATCTCTCAGATTCTCTTGTATCTTTGAAGCTACTAGGTCAAATAACATTTGACAC</gDNA_template>
            <first_frame> *  S  S  P  L  P  L  P  I  K  S  L  *  F  N  F  F  T  *  V  T  F  S  F  F  C  S  I  S  C  F  L  M  N  V  I  I  S  I  D  S  C  Y  K  I  F  V  F  C  C  C  C  F  F  F  L  *  A  Y  K  Q  Y  D  V  M  N  S  I  W  *  F  V  R  C  C  C  S  C  Y  F  R  N  C  L  L  L  H  S  N  *  I  T  V  R  S  Y  I  D  S  L  L  D  *  L  Q  G  F  K  Q  S  H  N  K  R  N  E  L  I  P  R  M  A  L  T  N  F  I  L  T  V  A  G  V  S  A  V  V  L  L  M  R  S  D  V  K  Q  S  A  S  I  F  K  R  N  V  R  Q  I  R  H  W  L  E  E  E  S  A  S  A  A  K :   G  I  E  K  A  K  P  K  E  I  S  Q  K  D  I  P  K  D  D  K  H  *  I  *  L  I  L  I  R  C  L  A  I  S  Q  L  P  F  Q  I  L  F  H  N  M  *  L  I  *  T  P  H  *  C  K  Y  P  V  K  Y  T  F  T  I  F  G  I  G  K  M  S  Y  F  H  I  L  C  H  H  R  A  F  K  I  L  V  I  D  M  T  E  L  S  C  K  L  *  *  S  *  S  L  R  F  S  C  I  F  E  A  T  R  S  N  N  I  *  H </first_frame>
            <second_frame>  E  V  H  L  Y  R  C  R  L  N  H  C  N  S  I  S  S  L  R  L  R  F  H  F  F  V  R  F  L  V  S  *  *  M  *  *  F  L  S  I  R  V  T  K  Y  L  C  F  V  V  V  A  F  F  F  C  K  L  I  N  N  M  M  L  *  I  R  Y  G  N  L  C  V  V  V  V  L  V  I  F  G  T  V  Y  F  Y  I  Q  I  E  S  L  Y  D  H  I  L  I  L  Y  L  I  N  C  K  V  L  S  N  L  T  I  K  E  T  N  *  S  P  E  W  R  *  R  T  L  Y  *  Q  L  R  E  *  A  L  W  F  Y  *  *  G  A  M  L  N  S  L  L  P  S  S  S  A  M  F  V  K  F  A  I  G  L  R  K  S  L  L  P  R  L   : R  E  *  R  R  Q  S  R  R  R  Y  L  R  R  T  S  P  K  T  T  N  T  R  F  D  S  Y  L  S  D  A  L  R  F  P  S  Y  H  F  R  F  C  S  I  T  C  D  *  F  R  L  P  I  S  V  S  I  L  L  N  I  L  L  P  F  L  V  L  A  K  *  A  I  F  T  Y  C  V  T  I  E  L  S  K  Y  *  *  L  T  *  L  N  S  L  V  S  C  N  N  H  D  L  S  D  S  L  V  S  L  K  L  L  G  Q  I  T  F  D   </second_frame>
            <third_frame>   K  F  T  S  T  A  A  D  *  I  T  V  I  Q  F  L  H  L  G  Y  V  F  I  F  L  F  D  F  L  F  L  N  E  C  D  N  F  Y  R  F  V  L  Q  N  I  C  V  L  L  L  L  L  F  F  F  V  S  L  *  T  I  *  C  Y  E  F  D  M  V  I  C  A  L  L  L  F  L  L  F  S  E  L  F  T  F  T  F  K  L  N  H  C  T  I  I  Y  *  F  S  T  *  L  I  A  R  F  *  A  I  S  Q  *  K  K  R  I  D  P  Q  N  G  V  N  E  L  Y  T  D  S  C  G  S  E  R  C  G  F  I  D  E  E  R  C  *  T  V  C  F  H  L  Q  A  Q  C  S  S  N  S  P  L  A  *  G  R  V  C  F  R  G  *  :  G  N  R  E  G  K  A  E  G  D  I  S  E  G  H  P  Q  R  R  Q  T  L  D  L  T  H  T  Y  Q  M  P  C  D  F  P  A  T  I  S  D  F  V  P  *  H  V  T  N  L  D  S  P  L  V  *  V  S  C  *  I  Y  F  Y  H  F  W  Y  W  Q  N  E  L  F  S  H  T  V  S  P  *  S  F  Q  N  T  S  N  *  H  D  *  T  L  L  *  V  V  I  I  M  I  S  Q  I  L  L  Y  L  *  S  Y  *  V  K  *  H  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37861" stop="37659"/>
                    <exon start="36566" stop="36500"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQGFKQSHNKRNELIPRMALTNFILTVAGVSAVVLLMRSDVKQSASIFKRNVRQIRHWLEEESASAAKGIEKAKPKEISQKDIPKDDKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39909" PGL_stop="44247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39909" e_stop="40290"/>
            <exon e_start="41212" e_stop="41309"/>
            <exon e_start="41403" e_stop="41453"/>
            <exon e_start="41614" e_stop="41727"/>
            <exon e_start="43310" e_stop="43366"/>
            <exon e_start="43455" e_stop="43540"/>
            <exon e_start="43649" e_stop="43739"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.533" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39909" e_stop="40290" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.533">
            <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41212" e_stop="41309" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="41310" i_stop="41402" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41403" e_stop="41453" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.953">
            <gDNA_intron_boundary i_start="41454" i_stop="41613" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41614" e_stop="41727" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41728" i_stop="43309" i_length="1582"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43310" e_stop="43366" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43455" e_stop="43540" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.943">
            <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43649" e_stop="43739" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39909" stop="40290"/>
              <exon start="41212" stop="41309"/>
              <exon start="41403" stop="41453"/>
              <exon start="41614" stop="41727"/>
              <exon start="43310" stop="43366"/>
              <exon start="43455" stop="43540"/>
              <exon start="43649" stop="43739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGCTGTGGCCTCTATTTATGGCCACATGCCCTACAATTTCTACCGCACCTTCTCCTCCACCGCCGCGCCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA : CATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAG : ATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAG : CTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTGCTATAATTGGCAGGGAG : ATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG : GCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG : TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATG</gDNA_template>
            <first_frame> K  A  V  A  S  I  Y  G  H  M  P  Y  N  F  Y  R  T  F  S  S  T  A  A  P  T  T  N  L  P  V  V  P  T  H  I  Y  R  S  R  R  I  S  T  P  A  P  A  F  S  K  V  S  I  F  S  C  Q  G  E  K  E  E  Y  A  P  F  S  V  R  N  I  S  T  T  G  M  G  Y  T  P  G  N  K  E  D  H  H  R  E  K  T  L  R  S  S  P  S  S  S  A  P  S  K  S  A  K  L  L  T  L  P  T  I  L  T  I  G  R  V  A  A  I  P  V  L  V  T   : T  F  Y  V  D  S  W  W  G  P  T  A  T  T  C  I  F  I  A  A  A  I  T  D  W  L  D  G  Y  L  A  R  K  :  M  N  L  G  T  A  F  G  A  F  L  D  P  V  A  D  K  :  L  M  V  A  A  T  L  I  L  L  C  T  K  P  L  E  A  S  L  F  G  Q  F  P  W  L  L  T  V  P  S  I  A  I  I  G  R  E  :  I  T  M  S  A  V  R  E  W  A  A  S  Q  G  G  K  L  S  E  :  A  V  A  V  N  N  L  G  K  W  K  T  A  T  Q  M  T  A  L  T  I  L  L  L  T  R  D  S  S :   L  S  G  A  G  T  F  V  A  S  G  V  I  L  L  Y  V  S  A  W  L  A  V  W  S  L  V  V  Y  M </first_frame>
            <second_frame>  K  L  W  P  L  F  M  A  T  C  P  T  I  S  T  A  P  S  P  P  P  P  R  Q  Q  Q  I  Y  R  W  C  R  H  T  F  T  V  A  G  G  S  Q  L  R  R  R  H  S  R  R  S  Q  F  F  P  V  K  G  R  R  R  S  M  P  L  F  Q  *  G  I  F  L  P  L  A  W  A  I  H  L  V  I  R  R  I  T  T  G  R  R  H  *  G  R  R  R  R  H  Q  L  H  Q  S  L  L  N  C  S  H  C  L  Q  F  *  Q  S  D  V  *  P  L  F  R  F  S  L  P  :  H  S  M  L  I  A  G  G  D  Q  P  L  Q  H  V  Y  L  L  L  Q  Q  *  L  I  G  *  M  D  I  L  L  A  R :   *  I  *  E  L  P  L  V  H  F  *  I  Q  W  L  I  S :   *  W  L  L  P  H  *  S  Y  C  A  P  N  L  W  R  L  V  C  L  D  N  F  H  G  Y  *  L  Y  L  L  L  L  *  L  A  G  R :   *  L  C  L  Q  L  E  N  G  R  L  L  R  V  V  N  F  Q  R :   L  L  L  *  I  T  W  G  S  G  K  Q  P  L  R  *  L  H  *  P  S  F  F  L  L  E  I  A   : V  Y  Q  G  L  E  L  L  *  L  L  V  *  S  C  Y  M  F  Q  H  G  *  L  Y  G  L  W  S  Y  I   </second_frame>
            <third_frame>   S  C  G  L  Y  L  W  P  H  A  L  Q  F  L  P  H  L  L  L  H  R  R  A  N  N  K  F  T  G  G  A  D  T  H  L  P  *  P  E  D  L  N  S  G  A  G  I  L  E  G  L  N  F  F  L  S  R  G  E  G  G  V  C  P  F  F  S  E  E  Y  F  Y  H  W  H  G  L  Y  T  W  *  *  G  G  S  P  P  G  E  D  I  E  V  V  A  V  V  I  S  S  I  K  V  C  *  T  A  H  T  A  Y  N  F  D  N  R  T  C  S  R  Y  S  G  S  R  Y  H :   I  L  C  *  *  L  V  G  T  N  R  Y  N  M  Y  I  Y  C  C  S  N  N  *  L  A  R  W  I  S  C  S  Q   : D  E  F  R  N  C  L  W  C  I  F  R  S  S  G  *  *   : A  N  G  C  C  H  I  D  L  I  V  H  Q  T  F  G  G  *  F  V  W  T  I  S  M  A  T  N  C  T  F  Y  C  Y  N  W  Q  G   : D  N  Y  V  C  S  *  R  M  G  G  F  S  G  W  *  T  F  R   : G  C  C  C  E  *  L  G  E  V  E  N  S  H  S  D  D  C  I  D  H  P  S  S  Y  *  R  *  Q  :  F  I  R  G  W  N  F  C  S  F  W  C  D  L  A  I  C  F  S  M  V  S  C  M  V  S  G  R  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39909" stop="40290"/>
                    <exon start="41212" stop="41309"/>
                    <exon start="41403" stop="41453"/>
                    <exon start="41614" stop="41727"/>
                    <exon start="43310" stop="43366"/>
                    <exon start="43455" stop="43540"/>
                    <exon start="43649" stop="43739"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAVASIYGHMPYNFYRTFSSTAAPTTNLPVVPTHIYRSRRISTPAPAFSKVSIFSCQGEKEEYAPFSVRNISTTGMGYTPGNKEDHHREKTLRSSPSSSAPSKSAKLLTLPTILTIGRVAAIPVLVTTFYVDSWWGPTATTCIFIAAAITDWLDGYLARKMNLGTAFGAFLDPVADKLMVAATLILLCTKPLEASLFGQFPWLLTVPSIAIIGREITMSAVREWAASQGGKLSEAVAVNNLGKWKTATQMTALTILLLTRDSSLSGAGTFVASGVILLYVSAWLAVWSLVVYM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42937" e_stop="43366"/>
            <exon e_start="43455" e_stop="43540"/>
            <exon e_start="43649" e_stop="44247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42937" e_stop="43366" e_length="430"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43367" i_stop="43454" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43455" e_stop="43540" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.943">
            <gDNA_intron_boundary i_start="43541" i_stop="43648" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="43649" e_stop="44247" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42937" stop="43366"/>
              <exon start="43455" stop="43540"/>
              <exon start="43649" stop="44247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTAGATTGAAAAGAAAGAGGAATTCGAGAGCTCTTGAGAACATGGATTGGAACTGTGGGTACTCTTGATGAACCTTATTGTTCACTTGATTTTTTTCGATTATTAAGTTTTGCATAGTATGTAGTCTTTCTGATAGTCTGTGAGATCATAGTGTCCATATTTAGCCTGGTAGTCGCTTTTGCTCAAGGTGCGATATCTTTTTTTCCAATATGATATTTATGATATGACACTCTTTGGTACCTTTTTCAAATATACATCATATGATGCTCTTCCATGTTCCTCGAAAATCTTTTCCCTGCATCATTAGTTATTTTCATTGTGGATGAGTGATAAACACTGTTTTTTGATTCATTTTGCAAATCTTTTTGTAGATAACTATGTCTGCAGTTAGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG : GCTGTTGCTGTGAATAACTTGGGGAAGTGGAAAACAGCCACTCAGATGACTGCATTGACCATCCTTCTTCTTACTAGAGATAGCAG : TTTATCAGGGGCTGGAACTTTTGTAGCTTCTGGTGTGATCTTGCTATATGTTTCAGCATGGTTAGCTGTATGGTCTCTGGTCGTATATATGAGAAAGATATCGAAAGTATTGTTGATGTAGAAATCATGGCCAATGATCACTCACATTTTGGCTCATTCTACTAGCTGTGGAGAAGCAGGTTGTACACAAGCTGATCCATGATTCTGCAAAAGGAAACTGCCCTTTGCAGTTGCATCTCGACTACGAGGGAAGTTGCTAACTTAATTCTGACATGCCTCGCCCCATATTTATCCCGTGTACTTTGGTTGTGACAGAGAGAAATGAAAAATGCTGGCTGTGTTCAACGTTTGCTTTTCCACTTCATTCTTTAACCATATTCTTTAGTGAAATTGGAGGCTCAATAGGAATATTACTATATCATTAAATACATGGAATTTGCGATATCTATTGTAATCGATTCTGATAGGAAAAATTTATACTCAAATATCGTTCCGGTTGAACCGGACTGATCGATGGCTCCTTCGGATCAATATTGCTATACACATTGCAGTAACTGTTTGTCATGCAATAAATTATGCACGAGGTGTTTGTTTACAGA</gDNA_template>
            <first_frame> A  *  I  E  K  K  E  E  F  E  S  S  *  E  H  G  L  E  L  W  V  L  L  M  N  L  I  V  H  L  I  F  F  D  Y  *  V  L  H  S  M  *  S  F  *  *  S  V  R  S  *  C  P  Y  L  A  W  *  S  L  L  L  K  V  R  Y  L  F  F  Q  Y  D  I  Y  D  M  T  L  F  G  T  F  F  K  Y  T  S  Y  D  A  L  P  C  S  S  K  I  F  S  L  H  H  *  L  F  S  L  W  M  S  D  K  H  C  F  L  I  H  F  A  N  L  F  V  D  N  Y  V  C  S  *  R  M  G  G  F  S  G  W  *  T  F  R   : G  C  C  C  E  *  L  G  E  V  E  N  S  H  S  D  D  C  I  D  H  P  S  S  Y  *  R  *  Q  :  F  I  R  G  W  N  F  C  S  F  W  C  D  L  A  I  C  F  S  M  V  S  C  M  V  S  G  R  I  Y  E  K  D  I  E  S  I  V  D  V  E  I  M  A  N  D  H  S  H  F  G  S  F  Y  *  L  W  R  S  R  L  Y  T  S  *  S  M  I  L  Q  K  E  T  A  L  C  S  C  I  S  T  T  R  E  V  A  N  L  I  L  T  C  L  A  P  Y  L  S  R  V  L  W  L  *  Q  R  E  M  K  N  A  G  C  V  Q  R  L  L  F  H  F  I  L  *  P  Y  S  L  V  K  L  E  A  Q  *  E  Y  Y  Y  I  I  K  Y  M  E  F  A  I  S  I  V  I  D  S  D  R  K  N  L  Y  S  N  I  V  P  V  E  P  D  *  S  M  A  P  S  D  Q  Y  C  Y  T  H  C  S  N  C  L  S  C  N  K  L  C  T  R  C  L  F  T   </first_frame>
            <second_frame>  L  R  L  K  R  K  R  N  S  R  A  L  E  N  M  D  W  N  C  G  Y  S  *  *  T  L  L  F  T  *  F  F  S  I  I  K  F  C  I  V  C  S  L  S  D  S  L  *  D  H  S  V  H  I  *  P  G  S  R  F  C  S  R  C  D  I  F  F  S  N  M  I  F  M  I  *  H  S  L  V  P  F  S  N  I  H  H  M  M  L  F  H  V  P  R  K  S  F  P  C  I  I  S  Y  F  H  C  G  *  V  I  N  T  V  F  *  F  I  L  Q  I  F  L  *  I  T  M  S  A  V  R  E  W  A  A  S  Q  G  G  K  L  S  E  :  A  V  A  V  N  N  L  G  K  W  K  T  A  T  Q  M  T  A  L  T  I  L  L  L  T  R  D  S  S :   L  S  G  A  G  T  F  V  A  S  G  V  I  L  L  Y  V  S  A  W  L  A  V  W  S  L  V  V  Y  M  R  K  I  S  K  V  L  L  M  *  K  S  W  P  M  I  T  H  I  L  A  H  S  T  S  C  G  E  A  G  C  T  Q  A  D  P  *  F  C  K  R  K  L  P  F  A  V  A  S  R  L  R  G  K  L  L  T  *  F  *  H  A  S  P  H  I  Y  P  V  Y  F  G  C  D  R  E  K  *  K  M  L  A  V  F  N  V  C  F  S  T  S  F  F  N  H  I  L  *  *  N  W  R  L  N  R  N  I  T  I  S  L  N  T  W  N  L  R  Y  L  L  *  S  I  L  I  G  K  I  Y  T  Q  I  S  F  R  L  N  R  T  D  R  W  L  L  R  I  N  I  A  I  H  I  A  V  T  V  C  H  A  I  N  Y  A  R  G  V  C  L  Q  </second_frame>
            <third_frame>   L  D  *  K  E  R  G  I  R  E  L  L  R  T  W  I  G  T  V  G  T  L  D  E  P  Y  C  S  L  D  F  F  R  L  L  S  F  A  *  Y  V  V  F  L  I  V  C  E  I  I  V  S  I  F  S  L  V  V  A  F  A  Q  G  A  I  S  F  F  P  I  *  Y  L  *  Y  D  T  L  W  Y  L  F  Q  I  Y  I  I  *  C  S  S  M  F  L  E  N  L  F  P  A  S  L  V  I  F  I  V  D  E  *  *  T  L  F  F  D  S  F  C  K  S  F  C  R  *  L  C  L  Q  L  E  N  G  R  L  L  R  V  V  N  F  Q  R :   L  L  L  *  I  T  W  G  S  G  K  Q  P  L  R  *  L  H  *  P  S  F  F  L  L  E  I  A   : V  Y  Q  G  L  E  L  L  *  L  L  V  *  S  C  Y  M  F  Q  H  G  *  L  Y  G  L  W  S  Y  I  *  E  R  Y  R  K  Y  C  *  C  R  N  H  G  Q  *  S  L  T  F  W  L  I  L  L  A  V  E  K  Q  V  V  H  K  L  I  H  D  S  A  K  G  N  C  P  L  Q  L  H  L  D  Y  E  G  S  C  *  L  N  S  D  M  P  R  P  I  F  I  P  C  T  L  V  V  T  E  R  N  E  K  C  W  L  C  S  T  F  A  F  P  L  H  S  L  T  I  F  F  S  E  I  G  G  S  I  G  I  L  L  Y  H  *  I  H  G  I  C  D  I  Y  C  N  R  F  *  *  E  K  F  I  L  K  Y  R  S  G  *  T  G  L  I  D  G  S  F  G  S  I  L  L  Y  T  L  Q  *  L  F  V  M  Q  *  I  M  H  E  V  F  V  Y  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43310" stop="43366"/>
                    <exon start="43455" stop="43540"/>
                    <exon start="43649" stop="43769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITMSAVREWAASQGGKLSEAVAVNNLGKWKTATQMTALTILLLTRDSSLSGAGTFVASGVILLYVSAWLAVWSLVVYMRKISKVLLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="39978" e_stop="40290"/>
            <exon e_start="41212" e_stop="41710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.533" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="39978" e_stop="40290" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.533">
            <gDNA_intron_boundary i_start="40291" i_stop="41211" i_length="921"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41212" e_stop="41710" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39978" stop="40290"/>
              <exon start="41212" stop="41710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAACAACAAATTTACCGGTGGTGCCGACACACATTTACCGTAGCCGGAGGATCTCAACTCCGGCGCCGGCATTCTCGAAGGTCTCAATTTTTTCCTGTCAAGGGGAGAAGGAGGAGTATGCCCCTTTTTCAGTGAGGAATATTTCTACCACTGGCATGGGCTATACACCTGGTAATAAGGAGGATCACCACCGGGAGAAGACATTGAGGTCGTCGCCGTCGTCATCAGCTCCATCAAAGTCTGCTAAACTGCTCACACTGCCTACAATTTTGACAATCGGACGTGTAGCCGCTATTCCGGTTCTCGTTACCA : CATTCTATGTTGATAGCTGGTGGGGACCAACCGCTACAACATGTATATTTATTGCTGCAGCAATAACTGATTGGCTAGATGGATATCTTGCTCGCAAGGTACATGCTTCTGCTGTTCAATAGAATCATTTTTTCTCGAATTATAATTTCTTATATTTCAACTTTCAAAATTGGCTGGTTTGACACGTCCAGATGAATTTAGGAACTGCCTTTGGTGCATTTTTAGATCCAGTGGCTGATAAGGTATTTTCTCTTTATTCTTCAATTCACATGGTATTACCTGGAAGTTTGGCCAGTTTGCTAGTGTTGCTACCATTATCCATAATGTTTGAGACTCTTCAGCATAATTGCTTGTAATGAAAGAGCAGACATTTTTTGATACAACTCTTCTTGACTTCAACAGCTAATGGTTGCTGCCACATTGATCTTATTGTGCACCAAACCTTTGGAGGCTAGTTTGTTTGGACAATTTCCATGGCTACTAACTGTACCTTCTATTG</gDNA_template>
            <first_frame> P  T  T  N  L  P  V  V  P  T  H  I  Y  R  S  R  R  I  S  T  P  A  P  A  F  S  K  V  S  I  F  S  C  Q  G  E  K  E  E  Y  A  P  F  S  V  R  N  I  S  T  T  G  M  G  Y  T  P  G  N  K  E  D  H  H  R  E  K  T  L  R  S  S  P  S  S  S  A  P  S  K  S  A  K  L  L  T  L  P  T  I  L  T  I  G  R  V  A  A  I  P  V  L  V  T   : T  F  Y  V  D  S  W  W  G  P  T  A  T  T  C  I  F  I  A  A  A  I  T  D  W  L  D  G  Y  L  A  R  K  V  H  A  S  A  V  Q  *  N  H  F  F  S  N  Y  N  F  L  Y  F  N  F  Q  N  W  L  V  *  H  V  Q  M  N  L  G  T  A  F  G  A  F  L  D  P  V  A  D  K  V  F  S  L  Y  S  S  I  H  M  V  L  P  G  S  L  A  S  L  L  V  L  L  P  L  S  I  M  F  E  T  L  Q  H  N  C  L  *  *  K  S  R  H  F  L  I  Q  L  F  L  T  S  T  A  N  G  C  C  H  I  D  L  I  V  H  Q  T  F  G  G  *  F  V  W  T  I  S  M  A  T  N  C  T  F  Y   </first_frame>
            <second_frame>  Q  Q  Q  I  Y  R  W  C  R  H  T  F  T  V  A  G  G  S  Q  L  R  R  R  H  S  R  R  S  Q  F  F  P  V  K  G  R  R  R  S  M  P  L  F  Q  *  G  I  F  L  P  L  A  W  A  I  H  L  V  I  R  R  I  T  T  G  R  R  H  *  G  R  R  R  R  H  Q  L  H  Q  S  L  L  N  C  S  H  C  L  Q  F  *  Q  S  D  V  *  P  L  F  R  F  S  L  P  :  H  S  M  L  I  A  G  G  D  Q  P  L  Q  H  V  Y  L  L  L  Q  Q  *  L  I  G  *  M  D  I  L  L  A  R  Y  M  L  L  L  F  N  R  I  I  F  S  R  I  I  I  S  Y  I  S  T  F  K  I  G  W  F  D  T  S  R  *  I  *  E  L  P  L  V  H  F  *  I  Q  W  L  I  R  Y  F  L  F  I  L  Q  F  T  W  Y  Y  L  E  V  W  P  V  C  *  C  C  Y  H  Y  P  *  C  L  R  L  F  S  I  I  A  C  N  E  R  A  D  I  F  *  Y  N  S  S  *  L  Q  Q  L  M  V  A  A  T  L  I  L  L  C  T  K  P  L  E  A  S  L  F  G  Q  F  P  W  L  L  T  V  P  S  I  </second_frame>
            <third_frame>   N  N  K  F  T  G  G  A  D  T  H  L  P  *  P  E  D  L  N  S  G  A  G  I  L  E  G  L  N  F  F  L  S  R  G  E  G  G  V  C  P  F  F  S  E  E  Y  F  Y  H  W  H  G  L  Y  T  W  *  *  G  G  S  P  P  G  E  D  I  E  V  V  A  V  V  I  S  S  I  K  V  C  *  T  A  H  T  A  Y  N  F  D  N  R  T  C  S  R  Y  S  G  S  R  Y  H :   I  L  C  *  *  L  V  G  T  N  R  Y  N  M  Y  I  Y  C  C  S  N  N  *  L  A  R  W  I  S  C  S  Q  G  T  C  F  C  C  S  I  E  S  F  F  L  E  L  *  F  L  I  F  Q  L  S  K  L  A  G  L  T  R  P  D  E  F  R  N  C  L  W  C  I  F  R  S  S  G  *  *  G  I  F  S  L  F  F  N  S  H  G  I  T  W  K  F  G  Q  F  A  S  V  A  T  I  I  H  N  V  *  D  S  S  A  *  L  L  V  M  K  E  Q  T  F  F  D  T  T  L  L  D  F  N  S  *  W  L  L  P  H  *  S  Y  C  A  P  N  L  W  R  L  V  C  L  D  N  F  H  G  Y  *  L  Y  L  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39978" stop="40290"/>
                    <exon start="41212" stop="41333"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTTNLPVVPTHIYRSRRISTPAPAFSKVSIFSCQGEKEEYAPFSVRNISTTGMGYTPGNKEDHHREKTLRSSPSSSAPSKSAKLLTLPTILTIGRVAAIPVLVTTFYVDSWWGPTATTCIFIAAAITDWLDGYLARKVHASAVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="48418" PGL_stop="48736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48418" e_stop="48736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48418" e_stop="48736" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48418" stop="48736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346657" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTAACGAATATTTCTCCGGTGGAGACTGCATTGGATTTGGCTTTAACAGAAAGTGCTTTTGCACTAAGGCTTGTTAATTAATTAATTAATTAATTAATTAGTGTCATGAAAATGACACTAAATTAATTTAATTAATTAGTTCATTAATCCATCTCTAAGTTAGTTTTGTTTTAGGCAATAATAAAATGTAGTAGTGTTTTTTTTCTTTTCTAAAGGGCATTATGCCCTTCAGGGTTGTAGTCTTTCTTCGAAATCTGTGTGAACATGAGGTGTTTTGTGCATCGATTGATTAGTAATTCAAGGGTTCTTTCTTTCTT</gDNA_template>
            <first_frame> P  *  R  I  F  L  R  W  R  L  H  W  I  W  L  *  Q  K  V  L  L  H  *  G  L  L  I  N  *  L  I  N  *  L  V  S  *  K  *  H  *  I  N  L  I  N  *  F  I  N  P  S  L  S  *  F  C  F  R  Q  *  *  N  V  V  V  F  F  F  F  S  K  G  H  Y  A  L  Q  G  C  S  L  S  S  K  S  V  *  T  *  G  V  L  C  I  D  *  L  V  I  Q  G  F  F  L  S  </first_frame>
            <second_frame>  R  N  E  Y  F  S  G  G  D  C  I  G  F  G  F  N  R  K  C  F  C  T  K  A  C  *  L  I  N  *  L  I  N  *  C  H  E  N  D  T  K  L  I  *  L  I  S  S  L  I  H  L  *  V  S  F  V  L  G  N  N  K  M  *  *  C  F  F  S  F  L  K  G  I  M  P  F  R  V  V  V  F  L  R  N  L  C  E  H  E  V  F  C  A  S  I  D  *  *  F  K  G  S  F  F  L </second_frame>
            <third_frame>   V  T  N  I  S  P  V  E  T  A  L  D  L  A  L  T  E  S  A  F  A  L  R  L  V  N  *  L  I  N  *  L  I  S  V  M  K  M  T  L  N  *  F  N  *  L  V  H  *  S  I  S  K  L  V  L  F  *  A  I  I  K  C  S  S  V  F  F  L  F  *  R  A  L  C  P  S  G  L  *  S  F  F  E  I  C  V  N  M  R  C  F  V  H  R  L  I  S  N  S  R  V  L  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="70065" PGL_stop="61842"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70065" e_stop="70046"/>
            <exon e_start="69084" e_stop="68934"/>
            <exon e_start="68664" e_stop="68588"/>
            <exon e_start="68504" e_stop="68446"/>
            <exon e_start="67820" e_stop="67737"/>
            <exon e_start="67614" e_stop="67522"/>
            <exon e_start="66765" e_stop="66685"/>
            <exon e_start="64866" e_stop="64735"/>
            <exon e_start="64626" e_stop="64524"/>
            <exon e_start="63158" e_stop="63064"/>
            <exon e_start="62958" e_stop="62893"/>
            <exon e_start="62802" e_stop="62718"/>
            <exon e_start="62443" e_stop="61842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70065" e_stop="70046" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.978">
            <gDNA_intron_boundary i_start="70045" i_stop="69085" i_length="961"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69084" e_stop="68934" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.792" acc_prob="0.892">
            <gDNA_intron_boundary i_start="68933" i_stop="68665" i_length="269"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68664" e_stop="68588" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68587" i_stop="68505" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68504" e_stop="68446" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.820" acc_prob="0.984">
            <gDNA_intron_boundary i_start="68445" i_stop="67821" i_length="625"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67820" e_stop="67737" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.989">
            <gDNA_intron_boundary i_start="67736" i_stop="67615" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67614" e_stop="67522" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.873">
            <gDNA_intron_boundary i_start="67521" i_stop="66766" i_length="756"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66765" e_stop="66685" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="66684" i_stop="64867" i_length="1818"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64866" e_stop="64735" e_length="132"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64734" i_stop="64627" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64626" e_stop="64524" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64523" i_stop="63159" i_length="1365"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="63158" e_stop="63064" e_length="95"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63063" i_stop="62959" i_length="105"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="62958" e_stop="62893" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62892" i_stop="62803" i_length="90"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="62802" e_stop="62718" e_length="85"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="62717" i_stop="62444" i_length="274"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62443" e_stop="61842" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70065" stop="70046"/>
              <exon start="69084" stop="68934"/>
              <exon start="68664" stop="68588"/>
              <exon start="68504" stop="68446"/>
              <exon start="67820" stop="67737"/>
              <exon start="67614" stop="67522"/>
              <exon start="66765" stop="66685"/>
              <exon start="64866" stop="64735"/>
              <exon start="64626" stop="64524"/>
              <exon start="63158" stop="63064"/>
              <exon start="62958" stop="62893"/>
              <exon start="62802" stop="62718"/>
              <exon start="62443" stop="61842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCACAGCCCAAACGACTAG : AGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAG : GAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATG : GTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAAT : GACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAG : GGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAG : ATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAG : ATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGA : GGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAG : GTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAG : GGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCA : AGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAG : CTGTTCCGATGGTGGAAGCAATGGTCGCCCTAGTGCTCGTGGATCAGTTGATGACTCAATATGCACAATGTATGCTATTTCCAGTCAATCTTACACTACAGGAACCTTTGCAGCCATCGACAACCAAGTCAGCTTAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTACCCCCCCCCCCCCCCATTACAACTTCTCACTACATGGCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGAAATTTTTTGTTAAAAGAAGTTATCCTCAACACATAGAGAGTTATATTGTTGAACAGAGAAATGTATATAGATTTTGTTGTTGGAGCTATCACCAGTTTGTTGCTCCGACTTTTCAATTATGTCTTTTGCTATGTGTTGGATCCTTCAAAAATAGTGCGTTTTTGGAGAATCCATCATAGGCACAACAATATTTTTGAAGAGTCTATACGGAGAGACAAGTACATCTAAAAAAAATGTGAAATTGTGACGTTTTCATTATTTTATAGGCTTTTCTTGTGTTTGTAAACTCAAGTTGTACTCACATAAGATTGTTAACAATGTAATTTGTATAATACAAACATTTACGATTTCATA</gDNA_template>
            <first_frame> I  T  A  Q  T  T  R :   D  T  S  C  W  *  Y  I  W  K  L  F  P  R  Y  N  V  W  R  I  S  R  W  W  C  R  L  Y  N  *  W  M  S  P  S  T  P  T  L  R  V  G  Y  A  S  G  T  *  Q  E  :  E  A  R  S  K  P  N  Y  H  T  K  K  R  D  *  Y  L  Q  N  I  I  R  H  C  *  W :   F  D  Y  G  I  S  N  Q  S  *  S  T  Q  H  *  P  E  R  K   : *  L  *  *  N  V  P  C  L  *  A  I  S  C  *  C  N  L  *  L  Q  V  W  S  *  I  S  T   : G  G  R  *  I  L  S  K  R  N  H  R  E  S  R  C  W  S  C  C  Q  E  N  S  Q  T  L  F  R  N  *   : D  P  C  L  C  F  T  S  S  Q  C  C  T  S  R  G  F  S  *  *  P  D  C  D  T  R  A   : D  *  K  Q  Y  C  S  L  P  E  P  *  I  C  R  K  D  D  W  C  H  *  L  C  T  S  E  G  G  F  C  W  W  C  R  N  L  H  C  *  K  C  S  T   : R  S  W  Y  T  S  L  *  *  T  *  S  *  A  G  *  S  L  H  V  I  T  S  N  K  G  F  *  V  W  K  W  L  C  R :   Y  F  H  D  W  Q  *  A  *  *  *  V  L  Y  G  *  T  *  P  N  Q  D  K  N  Q  *  I  W  W  Y  P   : G  R  H  I  K  W  R  N  Y  *  Y  E  S  S  I  Q  A  N  F  Y  N  C   : K  E  A  T  Y  C  *  *  G  *  T  *  D  *  T  H  C  S  W  S  P  *  S  L  C  G  S  T  S :   C  S  D  G  G  S  N  G  R  P  S  A  R  G  S  V  D  D  S  I  C  T  M  Y  A  I  S  S  Q  S  Y  T  T  G  T  F  A  A  I  D  N  Q  V  S  L  G  S  P  L  K  G  A  E  Q  F  A  Y  P  P  P  P  P  L  Q  L  L  T  T  W  L  L  T  F  L  A  F  Y  Y  V  W  R  V  K  F  F  V  K  R  S  Y  P  Q  H  I  E  S  Y  I  V  E  Q  R  N  V  Y  R  F  C  C  W  S  Y  H  Q  F  V  A  P  T  F  Q  L  C  L  L  L  C  V  G  S  F  K  N  S  A  F  L  E  N  P  S  *  A  Q  Q  Y  F  *  R  V  Y  T  E  R  Q  V  H  L  K  K  M  *  N  C  D  V  F  I  I  L  *  A  F  L  V  F  V  N  S  S  C  T  H  I  R  L  L  T  M  *  F  V  *  Y  K  H  L  R  F  H  </first_frame>
            <second_frame>  S  Q  P  K  R  L   : E  I  Q  A  A  G  N  T  F  G  N  Y  F  R  V  T  T  F  G  E  S  H  G  G  G  V  G  C  I  I  D  G  C  P  P  R  L  P  L  S  E  S  D  M  Q  V  E  L  D  R  R :   R  P  G  Q  S  R  I  T  T  P  R  K  E  T  D  T  C  K  I  S  S  G  T  A  D   : G  L  T  T  G  S  P  I  K  V  E  V  P  N  T  D  Q  R  G  N  :  D  Y  S  E  M  S  L  A  Y  R  P  S  H  A  D  A  T  Y  D  F  K  Y  G  V  R  S  V  Q  :  G  G  G  R  S  S  A  R  E  T  I  G  R  V  A  A  G  A  V  A  K  K  I  L  K  L  Y  S  G  T  E  :  I  L  A  Y  V  S  Q  V  H  N  V  V  L  P  E  D  L  V  D  N  Q  I  V  T  L  E  Q  :  I  E  S  N  I  V  R  C  P  N  P  E  Y  A  E  K  M  I  G  A  I  D  Y  V  R  V  R  G  D  S  V  G  G  V  V  T  C  I  V  R  N  V  P  R  :  G  L  G  T  P  V  F  D  K  L  E  A  E  L  A  K  A  C  M  S  L  P  A  T  K  G  F  E  F  G  S  G  F  A   : G  T  F  M  T  G  S  E  H  N  D  E  F  F  M  D  E  H  D  Q  I  R  T  K  T  N  R  S  G  G  I  Q  :  G  G  I  S  N  G  E  I  I  N  M  R  V  A  F  K  P  T  S  T  I  A  :  R  K  Q  H  T  V  S  R  D  K  H  E  T  E  L  I  A  R  G  R  H  D  P  C  V  V  P  R   : A  V  P  M  V  E  A  M  V  A  L  V  L  V  D  Q  L  M  T  Q  Y  A  Q  C  M  L  F  P  V  N  L  T  L  Q  E  P  L  Q  P  S  T  T  K  S  A  *  V  P  L  *  K  E  L  S  S  L  R  T  P  P  P  P  H  Y  N  F  S  L  H  G  F  S  H  F  W  H  S  T  T  F  G  E  *  N  F  L  L  K  E  V  I  L  N  T  *  R  V  I  L  L  N  R  E  M  Y  I  D  F  V  V  G  A  I  T  S  L  L  L  R  L  F  N  Y  V  F  C  Y  V  L  D  P  S  K  I  V  R  F  W  R  I  H  H  R  H  N  N  I  F  E  E  S  I  R  R  D  K  Y  I  *  K  K  C  E  I  V  T  F  S  L  F  Y  R  L  F  L  C  L  *  T  Q  V  V  L  T  *  D  C  *  Q  C  N  L  Y  N  T  N  I  Y  D  F  I </second_frame>
            <third_frame>   H  S  P  N  D  *  :  R  Y  K  L  L  V  I  H  L  E  I  I  S  A  L  Q  R  L  E  N  L  T  V  V  V  S  V  V  *  L  M  D  V  P  L  D  S  H  S  Q  S  R  I  C  K  W  N  L  T  G   : G  G  Q  V  K  A  E  L  P  H  Q  E  K  R  L  I  L  A  K  Y  H  Q  A  L  L  M  :  V  *  L  R  D  L  Q  S  K  L  K  Y  P  T  L  T  R  E  E  M :   T  I  V  K  C  P  L  L  I  G  H  L  M  L  M  Q  L  M  T  S  S  M  E  L  D  Q  Y  R :   G  E  V  D  P  Q  Q  E  K  P  S  G  E  S  L  L  E  L  L  P  R  K  F  S  N  F  I  Q  E  L  R :   S  L  L  M  F  H  K  F  T  M  L  Y  F  Q  R  I  *  L  I  T  R  L  *  H  *  S  R :   L  K  A  I  L  F  V  A  R  T  L  N  M  Q  K  R  *  L  V  P  L  I  M  Y  E  *  G  G  I  L  L  V  V  S  *  L  A  L  L  E  M  F  H  E :   V  L  V  H  Q  S  L  I  N  L  K  L  S  W  L  K  L  A  C  H  Y  Q  Q  Q  R  V  L  S  L  E  V  A  L  Q  :  V  L  S  *  L  A  V  S  I  M  M  S  S  L  W  M  N  M  T  K  S  G  Q  K  P  I  D  L  V  V  S  R :   E  A  Y  Q  M  E  K  L  L  I  *  E  *  H  S  S  Q  L  L  Q  L  Q :   G  S  N  I  L  L  V  G  I  N  M  R  L  N  S  L  L  V  V  A  M  I  L  V  W  F  H  E  :  L  F  R  W  W  K  Q  W  S  P  *  C  S  W  I  S  *  *  L  N  M  H  N  V  C  Y  F  Q  S  I  L  H  Y  R  N  L  C  S  H  R  Q  P  S  Q  L  R  F  P  F  K  R  S  *  A  V  C  V  P  P  P  P  P  I  T  T  S  H  Y  M  A  S  H  I  S  G  I  L  L  R  L  E  S  E  I  F  C  *  K  K  L  S  S  T  H  R  E  L  Y  C  *  T  E  K  C  I  *  I  L  L  L  E  L  S  P  V  C  C  S  D  F  S  I  M  S  F  A  M  C  W  I  L  Q  K  *  C  V  F  G  E  S  I  I  G  T  T  I  F  L  K  S  L  Y  G  E  T  S  T  S  K  K  N  V  K  L  *  R  F  H  Y  F  I  G  F  S  C  V  C  K  L  K  L  Y  S  H  K  I  V  N  N  V  I  C  I  I  Q  T  F  T  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70064" stop="70046"/>
                    <exon start="69084" stop="68934"/>
                    <exon start="68664" stop="68588"/>
                    <exon start="68504" stop="68446"/>
                    <exon start="67820" stop="67737"/>
                    <exon start="67614" stop="67522"/>
                    <exon start="66765" stop="66685"/>
                    <exon start="64866" stop="64735"/>
                    <exon start="64626" stop="64524"/>
                    <exon start="63158" stop="63064"/>
                    <exon start="62958" stop="62893"/>
                    <exon start="62802" stop="62718"/>
                    <exon start="62443" stop="62307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQPKRLEIQAAGNTFGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSRITTPRKETDTCKISSGTADGLTTGSPIKVEVPNTDQRGNDYSEMSLAYRPSHADATYDFKYGVRSVQGGGRSSARETIGRVAAGAVAKKILKLYSGTEILAYVSQVHNVVLPEDLVDNQIVTLEQIESNIVRCPNPEYAEKMIGAIDYVRVRGDSVGGVVTCIVRNVPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAGTFMTGSEHNDEFFMDEHDQIRTKTNRSGGIQGGISNGEIINMRVAFKPTSTIARKQHTVSRDKHETELIARGRHDPCVVPRAVPMVEAMVALVLVDQLMTQYAQCMLFPVNLTLQEPLQPSTTKSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="72854" PGL_stop="76733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72854" e_stop="73561"/>
            <exon e_start="74128" e_stop="74358"/>
            <exon e_start="74598" e_stop="75244"/>
            <exon e_start="75877" e_stop="76733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.426" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72854" e_stop="73561" e_length="708"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.426">
            <gDNA_intron_boundary i_start="73562" i_stop="74127" i_length="566"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74128" e_stop="74358" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="74359" i_stop="74597" i_length="239"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74598" e_stop="75244" e_length="647"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.935">
            <gDNA_intron_boundary i_start="75245" i_stop="75876" i_length="632"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="75877" e_stop="76733" e_length="857"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72854" stop="73561"/>
              <exon start="74128" stop="74358"/>
              <exon start="74598" stop="75244"/>
              <exon start="75877" stop="76733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321036" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGGCGAAAGAGCGTTTAAGAGTCAGAATTACGGATGCTGATCATGAAAGATGGGAAGTTCCTCGAGAATTTATCCCTCGGGAAACTCATTTACCCCCCCGAAGCTCCCTCTTGGAAAAGCGTTCTTCTACCTCATTTCCATTATCAGAAGAAACGCACTACTTCCATACAGACACCGTTTCGGACCTTGCTTTCACTCTCTACAACACCACCCCTTTTGGCTTTACTATCACGCGCCACTCCACAGGTGACGTTCTTTTTGACACCAGACCTGAGAATGACTCTCCAGACACGTTCTTCATCTTCAAGGATCAGTACCTTCAATTGTCCTCTTCATTGCCAGCCAATAGGTCATCTATTTATGGTCTCGGGGAGCATACCAAAAGAAATTTTAAGCTCAAGCATAATCAGACATTGACTCTTTGGAATGCTGATATTGCTAGTGCTAATGCTGATCTCAACTTGTATGGTTCCCACCCTTTTTACATGGATGTCAGGTCTCATCCTGGCGGGGGGACTAGTCACGGAGTCTTGCTGTTCAATAGTAATGGCATGGACATTGTGTACGCTGGTGACAGAATTACATACAAGGTGATTGGAGGGGTGGTTGACTTGTACTTCTTTGCTGGTCCTGTGCCAGAGTTGGTCATGGAACAGTACACAGAGCTCATTGGCCGCCCAGCGCCCATGCCATACTGGTCTTTTG : GATTTCACCAATGCCGTTATGGTTATAAAGACATTACTGAAATTAAGAATGTGGTTGCTGGCTATGCGAAAGCTCAGATCCCTCTCGAGGTCATGTGGACAGATATTGATCATATGGATGGTTACAAGGATTTCACACTCGATCCTATTAACTTCCCACTTGACCAGATGAAGAAATTTGTCGATACACTTCATCAGAATGGCCAGAAATTTGTTCTCATATTGGATCCAG : GGATCAGCATAAATAGCTCATACGAAACATACAAGAGAGGGATGCAAGCAGACGTTTTCATCAAACGCAATGGTGTCCCTTATCTTGGCGAAGTTTGGCCTGGAAAAGTCTACTTTCCTGATTTCATAAATCCCCGAGGGAGAGTCTTCTGGAGTAATGAAATCAAGATTTTCCATGACCTTCTCCCCATCGATGGTCTCTGGCTTGACATGAATGAGTTATCTAACTTCATTTCTTCTCCTCCGAGCCCCTCTTCTACCCTTGACAACCCTCCTTATAAGATCAATAACTCAGGAGGCTTACGTCCAATAAACGAGAAGACTGTCCCAGCAACATCAGTACATTTTGGGAATACCTTAGAGTACGATGTTCATAACCTCTACGGATTCCTGGAAGCTAAAACGACCAATGCTGCTTTAATCGATGTTACTGGAAAAAGACCATTTATACTTAGCAGATCTACCTTTGTGGGTTCTGGGAAGTACACGGCACATTGGACCGGAGACAATGCAGCCACATGGGATGACTTGGCTTATAGTATTCCCAGCGTTTTGAGTTCTGGACTGTTTGGGATTCCCATGGTTGGAGCTGATATATGTGGCTTTGGTAGAAATACTACAGAAGAATTATGTCGTCGTTGGATTCAG : CTAGGTGCATTTTATCCCTTTGCAAGGGATCACTCTGAGAAGTTCACTATCCATCAAGAGCTATATATCTGGGATTCAGTAGCTGCAACAGCCAGAAAGGTGCTCGGACTACGGTATCGTCTCTTACCATACTTCTACACGCTAATGTTCGAGGCCCACACCAAAGGCATCCCTATAGCGCGTCCTCTTTTCTTTTCATTTCCCGAGGATGCAAACACTTACACCATCGACTCTCAGTTTCTCATCGGTAAGGGGTTAATGATATCACCAGTACTGACATCTGGAGCAGTTTCAGTTAACGCGTATTTCCCATCTGGTACCTGGTTCAACCTCTTCAACTATTCAAACTACGTCAACATGAAGTCCGGTAGCTACATCAGTCTAGACGCGCCTCCTGATCATATCAATGTGCATCTCAGAGAGGGAAACATTGTGGTGATGCAAGGAGAAGCAATGACAACAAGAGCAGCCAGGGATACTCCGTTTGAACTTGTTGTCGCGATCAACAACTGGGGAAATAGTTCAGGGGAAGTCTTCTTGGACGATGGCGAAGACGTTGAAATGGGAGGAGAGGGAGGAAAATGGAGCCTAGTGAAATTTCACACTAATGTTGTGAATAAGAAGTTATATCTAAGATCAAATGTTGTGAATGAAGAGTTTGCTTTGAGTAAGAATTGGAGAATACACAAAGTGACTTTTCTTGGACTGAAAAAAGGGGTGAGTAAAATAAATGCATATAATTTGACTACTAAAATTAGAACAAAAATTGATAAAAGTGCATTTGGTGTTTTGGAGATGGGAGGTCTGTCAGTTCTAATTGGAAAAGAATTTACTATAGAGCTAACACTTTGAAAATT</gDNA_template>
            <first_frame> L  R  R  K  S  V  *  E  S  E  L  R  M  L  I  M  K  D  G  K  F  L  E  N  L  S  L  G  K  L  I  Y  P  P  E  A  P  S  W  K  S  V  L  L  P  H  F  H  Y  Q  K  K  R  T  T  S  I  Q  T  P  F  R  T  L  L  S  L  S  T  T  P  P  L  L  A  L  L  S  R  A  T  P  Q  V  T  F  F  L  T  P  D  L  R  M  T  L  Q  T  R  S  S  S  S  R  I  S  T  F  N  C  P  L  H  C  Q  P  I  G  H  L  F  M  V  S  G  S  I  P  K  E  I  L  S  S  S  I  I  R  H  *  L  F  G  M  L  I  L  L  V  L  M  L  I  S  T  C  M  V  P  T  L  F  T  W  M  S  G  L  I  L  A  G  G  L  V  T  E  S  C  C  S  I  V  M  A  W  T  L  C  T  L  V  T  E  L  H  T  R  *  L  E  G  W  L  T  C  T  S  L  L  V  L  C  Q  S  W  S  W  N  S  T  Q  S  S  L  A  A  Q  R  P  C  H  T  G  L  L  :  D  F  T  N  A  V  M  V  I  K  T  L  L  K  L  R  M  W  L  L  A  M  R  K  L  R  S  L  S  R  S  C  G  Q  I  L  I  I  W  M  V  T  R  I  S  H  S  I  L  L  T  S  H  L  T  R  *  R  N  L  S  I  H  F  I  R  M  A  R  N  L  F  S  Y  W  I  Q  :  G  S  A  *  I  A  H  T  K  H  T  R  E  G  C  K  Q  T  F  S  S  N  A  M  V  S  L  I  L  A  K  F  G  L  E  K  S  T  F  L  I  S  *  I  P  E  G  E  S  S  G  V  M  K  S  R  F  S  M  T  F  S  P  S  M  V  S  G  L  T  *  M  S  Y  L  T  S  F  L  L  L  R  A  P  L  L  P  L  T  T  L  L  I  R  S  I  T  Q  E  A  Y  V  Q  *  T  R  R  L  S  Q  Q  H  Q  Y  I  L  G  I  P  *  S  T  M  F  I  T  S  T  D  S  W  K  L  K  R  P  M  L  L  *  S  M  L  L  E  K  D  H  L  Y  L  A  D  L  P  L  W  V  L  G  S  T  R  H  I  G  P  E  T  M  Q  P  H  G  M  T  W  L  I  V  F  P  A  F  *  V  L  D  C  L  G  F  P  W  L  E  L  I  Y  V  A  L  V  E  I  L  Q  K  N  Y  V  V  V  G  F  S :   *  V  H  F  I  P  L  Q  G  I  T  L  R  S  S  L  S  I  K  S  Y  I  S  G  I  Q  *  L  Q  Q  P  E  R  C  S  D  Y  G  I  V  S  Y  H  T  S  T  R  *  C  S  R  P  T  P  K  A  S  L  *  R  V  L  F  S  F  H  F  P  R  M  Q  T  L  T  P  S  T  L  S  F  S  S  V  R  G  *  *  Y  H  Q  Y  *  H  L  E  Q  F  Q  L  T  R  I  S  H  L  V  P  G  S  T  S  S  T  I  Q  T  T  S  T  *  S  P  V  A  T  S  V  *  T  R  L  L  I  I  S  M  C  I  S  E  R  E  T  L  W  *  C  K  E  K  Q  *  Q  Q  E  Q  P  G  I  L  R  L  N  L  L  S  R  S  T  T  G  E  I  V  Q  G  K  S  S  W  T  M  A  K  T  L  K  W  E  E  R  E  E  N  G  A  *  *  N  F  T  L  M  L  *  I  R  S  Y  I  *  D  Q  M  L  *  M  K  S  L  L  *  V  R  I  G  E  Y  T  K  *  L  F  L  D  *  K  K  G  *  V  K  *  M  H  I  I  *  L  L  K  L  E  Q  K  L  I  K  V  H  L  V  F  W  R  W  E  V  C  Q  F  *  L  E  K  N  L  L  *  S  *  H  F  E  N  </first_frame>
            <second_frame>  *  G  E  R  A  F  K  S  Q  N  Y  G  C  *  S  *  K  M  G  S  S  S  R  I  Y  P  S  G  N  S  F  T  P  P  K  L  P  L  G  K  A  F  F  Y  L  I  S  I  I  R  R  N  A  L  L  P  Y  R  H  R  F  G  P  C  F  H  S  L  Q  H  H  P  F  W  L  Y  Y  H  A  P  L  H  R  *  R  S  F  *  H  Q  T  *  E  *  L  S  R  H  V  L  H  L  Q  G  S  V  P  S  I  V  L  F  I  A  S  Q  *  V  I  Y  L  W  S  R  G  A  Y  Q  K  K  F  *  A  Q  A  *  S  D  I  D  S  L  E  C  *  Y  C  *  C  *  C  *  S  Q  L  V  W  F  P  P  F  L  H  G  C  Q  V  S  S  W  R  G  D  *  S  R  S  L  A  V  Q  *  *  W  H  G  H  C  V  R  W  *  Q  N  Y  I  Q  G  D  W  R  G  G  *  L  V  L  L  C  W  S  C  A  R  V  G  H  G  T  V  H  R  A  H  W  P  P  S  A  H  A  I  L  V  F  W :   I  S  P  M  P  L  W  L  *  R  H  Y  *  N  *  E  C  G  C  W  L  C  E  S  S  D  P  S  R  G  H  V  D  R  Y  *  S  Y  G  W  L  Q  G  F  H  T  R  S  Y  *  L  P  T  *  P  D  E  E  I  C  R  Y  T  S  S  E  W  P  E  I  C  S  H  I  G  S  R :   D  Q  H  K  *  L  I  R  N  I  Q  E  R  D  A  S  R  R  F  H  Q  T  Q  W  C  P  L  S  W  R  S  L  A  W  K  S  L  L  S  *  F  H  K  S  P  R  E  S  L  L  E  *  *  N  Q  D  F  P  *  P  S  P  H  R  W  S  L  A  *  H  E  *  V  I  *  L  H  F  F  S  S  E  P  L  F  Y  P  *  Q  P  S  L  *  D  Q  *  L  R  R  L  T  S  N  K  R  E  D  C  P  S  N  I  S  T  F  W  E  Y  L  R  V  R  C  S  *  P  L  R  I  P  G  S  *  N  D  Q  C  C  F  N  R  C  Y  W  K  K  T  I  Y  T  *  Q  I  Y  L  C  G  F  W  E  V  H  G  T  L  D  R  R  Q  C  S  H  M  G  *  L  G  L  *  Y  S  Q  R  F  E  F  W  T  V  W  D  S  H  G  W  S  *  Y  M  W  L  W  *  K  Y  Y  R  R  I  M  S  S  L  D  S   : A  R  C  I  L  S  L  C  K  G  S  L  *  E  V  H  Y  P  S  R  A  I  Y  L  G  F  S  S  C  N  S  Q  K  G  A  R  T  T  V  S  S  L  T  I  L  L  H  A  N  V  R  G  P  H  Q  R  H  P  Y  S  A  S  S  F  L  F  I  S  R  G  C  K  H  L  H  H  R  L  S  V  S  H  R  *  G  V  N  D  I  T  S  T  D  I  W  S  S  F  S  *  R  V  F  P  I  W  Y  L  V  Q  P  L  Q  L  F  K  L  R  Q  H  E  V  R  *  L  H  Q  S  R  R  A  S  *  S  Y  Q  C  A  S  Q  R  G  K  H  C  G  D  A  R  R  S  N  D  N  K  S  S  Q  G  Y  S  V  *  T  C  C  R  D  Q  Q  L  G  K  *  F  R  G  S  L  L  G  R  W  R  R  R  *  N  G  R  R  G  R  K  M  E  P  S  E  I  S  H  *  C  C  E  *  E  V  I  S  K  I  K  C  C  E  *  R  V  C  F  E  *  E  L  E  N  T  Q  S  D  F  S  W  T  E  K  R  G  E  *  N  K  C  I  *  F  D  Y  *  N  *  N  K  N  *  *  K  C  I  W  C  F  G  D  G  R  S  V  S  S  N  W  K  R  I  Y  Y  R  A  N  T  L  K  I </second_frame>
            <third_frame>   E  A  K  E  R  L  R  V  R  I  T  D  A  D  H  E  R  W  E  V  P  R  E  F  I  P  R  E  T  H  L  P  P  R  S  S  L  L  E  K  R  S  S  T  S  F  P  L  S  E  E  T  H  Y  F  H  T  D  T  V  S  D  L  A  F  T  L  Y  N  T  T  P  F  G  F  T  I  T  R  H  S  T  G  D  V  L  F  D  T  R  P  E  N  D  S  P  D  T  F  F  I  F  K  D  Q  Y  L  Q  L  S  S  S  L  P  A  N  R  S  S  I  Y  G  L  G  E  H  T  K  R  N  F  K  L  K  H  N  Q  T  L  T  L  W  N  A  D  I  A  S  A  N  A  D  L  N  L  Y  G  S  H  P  F  Y  M  D  V  R  S  H  P  G  G  G  T  S  H  G  V  L  L  F  N  S  N  G  M  D  I  V  Y  A  G  D  R  I  T  Y  K  V  I  G  G  V  V  D  L  Y  F  F  A  G  P  V  P  E  L  V  M  E  Q  Y  T  E  L  I  G  R  P  A  P  M  P  Y  W  S  F   : G  F  H  Q  C  R  Y  G  Y  K  D  I  T  E  I  K  N  V  V  A  G  Y  A  K  A  Q  I  P  L  E  V  M  W  T  D  I  D  H  M  D  G  Y  K  D  F  T  L  D  P  I  N  F  P  L  D  Q  M  K  K  F  V  D  T  L  H  Q  N  G  Q  K  F  V  L  I  L  D  P   : G  I  S  I  N  S  S  Y  E  T  Y  K  R  G  M  Q  A  D  V  F  I  K  R  N  G  V  P  Y  L  G  E  V  W  P  G  K  V  Y  F  P  D  F  I  N  P  R  G  R  V  F  W  S  N  E  I  K  I  F  H  D  L  L  P  I  D  G  L  W  L  D  M  N  E  L  S  N  F  I  S  S  P  P  S  P  S  S  T  L  D  N  P  P  Y  K  I  N  N  S  G  G  L  R  P  I  N  E  K  T  V  P  A  T  S  V  H  F  G  N  T  L  E  Y  D  V  H  N  L  Y  G  F  L  E  A  K  T  T  N  A  A  L  I  D  V  T  G  K  R  P  F  I  L  S  R  S  T  F  V  G  S  G  K  Y  T  A  H  W  T  G  D  N  A  A  T  W  D  D  L  A  Y  S  I  P  S  V  L  S  S  G  L  F  G  I  P  M  V  G  A  D  I  C  G  F  G  R  N  T  T  E  E  L  C  R  R  W  I  Q  :  L  G  A  F  Y  P  F  A  R  D  H  S  E  K  F  T  I  H  Q  E  L  Y  I  W  D  S  V  A  A  T  A  R  K  V  L  G  L  R  Y  R  L  L  P  Y  F  Y  T  L  M  F  E  A  H  T  K  G  I  P  I  A  R  P  L  F  F  S  F  P  E  D  A  N  T  Y  T  I  D  S  Q  F  L  I  G  K  G  L  M  I  S  P  V  L  T  S  G  A  V  S  V  N  A  Y  F  P  S  G  T  W  F  N  L  F  N  Y  S  N  Y  V  N  M  K  S  G  S  Y  I  S  L  D  A  P  P  D  H  I  N  V  H  L  R  E  G  N  I  V  V  M  Q  G  E  A  M  T  T  R  A  A  R  D  T  P  F  E  L  V  V  A  I  N  N  W  G  N  S  S  G  E  V  F  L  D  D  G  E  D  V  E  M  G  G  E  G  G  K  W  S  L  V  K  F  H  T  N  V  V  N  K  K  L  Y  L  R  S  N  V  V  N  E  E  F  A  L  S  K  N  W  R  I  H  K  V  T  F  L  G  L  K  K  G  V  S  K  I  N  A  Y  N  L  T  T  K  I  R  T  K  I  D  K  S  A  F  G  V  L  E  M  G  G  L  S  V  L  I  G  K  E  F  T  I  E  L  T  L  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72856" stop="73561"/>
                    <exon start="74128" stop="74358"/>
                    <exon start="74598" stop="75244"/>
                    <exon start="75877" stop="76728"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2433</number_coding_nucleotides>
                  <number_encoded_amino_acids>811</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAKERLRVRITDADHERWEVPREFIPRETHLPPRSSLLEKRSSTSFPLSEETHYFHTDTVSDLAFTLYNTTPFGFTITRHSTGDVLFDTRPENDSPDTFFIFKDQYLQLSSSLPANRSSIYGLGEHTKRNFKLKHNQTLTLWNADIASANADLNLYGSHPFYMDVRSHPGGGTSHGVLLFNSNGMDIVYAGDRITYKVIGGVVDLYFFAGPVPELVMEQYTELIGRPAPMPYWSFGFHQCRYGYKDITEIKNVVAGYAKAQIPLEVMWTDIDHMDGYKDFTLDPINFPLDQMKKFVDTLHQNGQKFVLILDPGISINSSYETYKRGMQADVFIKRNGVPYLGEVWPGKVYFPDFINPRGRVFWSNEIKIFHDLLPIDGLWLDMNELSNFISSPPSPSSTLDNPPYKINNSGGLRPINEKTVPATSVHFGNTLEYDVHNLYGFLEAKTTNAALIDVTGKRPFILSRSTFVGSGKYTAHWTGDNAATWDDLAYSIPSVLSSGLFGIPMVGADICGFGRNTTEELCRRWIQLGAFYPFARDHSEKFTIHQELYIWDSVAATARKVLGLRYRLLPYFYTLMFEAHTKGIPIARPLFFSFPEDANTYTIDSQFLIGKGLMISPVLTSGAVSVNAYFPSGTWFNLFNYSNYVNMKSGSYISLDAPPDHINVHLREGNIVVMQGEAMTTRAARDTPFELVVAINNWGNSSGEVFLDDGEDVEMGGEGGKWSLVKFHTNVVNKKLYLRSNVVNEEFALSKNWRIHKVTFLGLKKGVSKINAYNLTTKIRTKIDKSAFGVLEMGGLSVLIGKEFTIELTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="109948" PGL_stop="113773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109948" e_stop="110707"/>
            <exon e_start="113251" e_stop="113773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.914" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109948" e_stop="110707" e_length="760"/>
          </exon>
          <intron i_serial="1" don_prob="0.914" acc_prob="0.997">
            <gDNA_intron_boundary i_start="110708" i_stop="113250" i_length="2543"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="113251" e_stop="113773" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109948" stop="110707"/>
              <exon start="113251" stop="113773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCCTAATTCTTTCCCCTTTCATCAAGCGATTTGTCTGTGTCTTCTTGATTTTTCCCTCTTTCTCTCCATTAGACACTCAATTTTCTTTTGCGTATTTGCCTTTAGATTTTTCCTTCTCGTATTTACTTGAATTGGGTATAACCCATTTGAATTTTCAACTTTGTATCTGATTTTTCGGTTTAAAAATCGATTCTTTTGGTCAAGAACTGATATGGGTGTTGGAATTTCTGTGCTTATAGCCATAAAGTCAGTAACTTTATTCATATTATTTGCAACTCTCAAGAATTATGGGTACCCATTATTGTCAATACCTTGTTTGTATGCATCATTGGTATCTTTGTTGGTAGCATTAGCTGCTAACCCTTCAATTGATCTTCCAATTCTTTTGGGGAAAAACACAGATGGGACATTCCCAATTTGGTCACTTGTGATGTTTAGTCCTTACTTGTATTTTGTTAGGGGTTTTTCAGCTTTGAGAAGAATGAAGAGTGGGGAACCTCCATATAGTGAGATTTCTGAAGGGTTGTATGTTGGGGGTTGGCCTTGTTCACTTGATAAATTGCCACCTGGTAATCCTGCTATTATTGATTGTACTTGTGAGATGCCTAGGATGTTGGAGTTTACTGGAAATCATGCATTTTTGTGTATTCCAACTTGGGATACTAGGTCACCTCAGCCAGCTGATATAGAGGTTGCTATTAAGTGGGCTTGTAGAAAAAGAGCTCAGAAGATACCTGTTTTCATCCATTGTGCATATG : GTCATGGAAGGAGCGTTGCAGTCATGTGTGCACTGTTAGTAGCTCTTGGTCTAGCAGAAGACTGGAAAAATGCTGAGAAATTGATCAAAGAAAAACGGCCATACATACGAATGAACGCTCTGCATCGCAAAGCTTTAGAGGAATGGTCGAAGGATCGTCTCTCTTCCCCAAAAGTTGGAGTTAGTTCCGTGATTCTGTCGAGTGCTAACGACCGTTCCTGATCAATTGACTGCAGTTGCAAGACCAATTAATTATATAGATGATTGGCTGTTTGTCTTCACTTTTGATTACACACTATACTTGATGATTGAGATTTTTGCTTCTTTTTATCAAGTAGAAGCGTACTCTCTTGATATATTTCTTGTAATAGAAAATGTTTGATTGCCAGGATTGTGTTTGACATAAAAATTCTTAAAACTATTTTTGAATCCTAAGCATCTAGTGAAACTGTATTTATTGTGTATCAAGATTCTGTTATATTCTTAAAAAGCAGCTAAGTATTATTCCATTCTTTACATTTGTG</gDNA_template>
            <first_frame> T  P  N  S  F  P  F  H  Q  A  I  C  L  C  L  L  D  F  S  L  F  L  S  I  R  H  S  I  F  F  C  V  F  A  F  R  F  F  L  L  V  F  T  *  I  G  Y  N  P  F  E  F  S  T  L  Y  L  I  F  R  F  K  N  R  F  F  W  S  R  T  D  M  G  V  G  I  S  V  L  I  A  I  K  S  V  T  L  F  I  L  F  A  T  L  K  N  Y  G  Y  P  L  L  S  I  P  C  L  Y  A  S  L  V  S  L  L  V  A  L  A  A  N  P  S  I  D  L  P  I  L  L  G  K  N  T  D  G  T  F  P  I  W  S  L  V  M  F  S  P  Y  L  Y  F  V  R  G  F  S  A  L  R  R  M  K  S  G  E  P  P  Y  S  E  I  S  E  G  L  Y  V  G  G  W  P  C  S  L  D  K  L  P  P  G  N  P  A  I  I  D  C  T  C  E  M  P  R  M  L  E  F  T  G  N  H  A  F  L  C  I  P  T  W  D  T  R  S  P  Q  P  A  D  I  E  V  A  I  K  W  A  C  R  K  R  A  Q  K  I  P  V  F  I  H  C  A  Y   : G  H  G  R  S  V  A  V  M  C  A  L  L  V  A  L  G  L  A  E  D  W  K  N  A  E  K  L  I  K  E  K  R  P  Y  I  R  M  N  A  L  H  R  K  A  L  E  E  W  S  K  D  R  L  S  S  P  K  V  G  V  S  S  V  I  L  S  S  A  N  D  R  S  *  S  I  D  C  S  C  K  T  N  *  L  Y  R  *  L  A  V  C  L  H  F  *  L  H  T  I  L  D  D  *  D  F  C  F  F  L  S  S  R  S  V  L  S  *  Y  I  S  C  N  R  K  C  L  I  A  R  I  V  F  D  I  K  I  L  K  T  I  F  E  S  *  A  S  S  E  T  V  F  I  V  Y  Q  D  S  V  I  F  L  K  S  S  *  V  L  F  H  S  L  H  L   </first_frame>
            <second_frame>  L  L  I  L  S  P  F  I  K  R  F  V  C  V  F  L  I  F  P  S  F  S  P  L  D  T  Q  F  S  F  A  Y  L  P  L  D  F  S  F  S  Y  L  L  E  L  G  I  T  H  L  N  F  Q  L  C  I  *  F  F  G  L  K  I  D  S  F  G  Q  E  L  I  W  V  L  E  F  L  C  L  *  P  *  S  Q  *  L  Y  S  Y  Y  L  Q  L  S  R  I  M  G  T  H  Y  C  Q  Y  L  V  C  M  H  H  W  Y  L  C  W  *  H  *  L  L  T  L  Q  L  I  F  Q  F  F  W  G  K  T  Q  M  G  H  S  Q  F  G  H  L  *  C  L  V  L  T  C  I  L  L  G  V  F  Q  L  *  E  E  *  R  V  G  N  L  H  I  V  R  F  L  K  G  C  M  L  G  V  G  L  V  H  L  I  N  C  H  L  V  I  L  L  L  L  I  V  L  V  R  C  L  G  C  W  S  L  L  E  I  M  H  F  C  V  F  Q  L  G  I  L  G  H  L  S  Q  L  I  *  R  L  L  L  S  G  L  V  E  K  E  L  R  R  Y  L  F  S  S  I  V  H  M  :  V  M  E  G  A  L  Q  S  C  V  H  C  *  *  L  L  V  *  Q  K  T  G  K  M  L  R  N  *  S  K  K  N  G  H  T  Y  E  *  T  L  C  I  A  K  L  *  R  N  G  R  R  I  V  S  L  P  Q  K  L  E  L  V  P  *  F  C  R  V  L  T  T  V  P  D  Q  L  T  A  V  A  R  P  I  N  Y  I  D  D  W  L  F  V  F  T  F  D  Y  T  L  Y  L  M  I  E  I  F  A  S  F  Y  Q  V  E  A  Y  S  L  D  I  F  L  V  I  E  N  V  *  L  P  G  L  C  L  T  *  K  F  L  K  L  F  L  N  P  K  H  L  V  K  L  Y  L  L  C  I  K  I  L  L  Y  S  *  K  A  A  K  Y  Y  S  I  L  Y  I  C  </second_frame>
            <third_frame>   S  *  F  F  P  L  S  S  S  D  L  S  V  S  S  *  F  F  P  L  S  L  H  *  T  L  N  F  L  L  R  I  C  L  *  I  F  P  S  R  I  Y  L  N  W  V  *  P  I  *  I  F  N  F  V  S  D  F  S  V  *  K  S  I  L  L  V  K  N  *  Y  G  C  W  N  F  C  A  Y  S  H  K  V  S  N  F  I  H  I  I  C  N  S  Q  E  L  W  V  P  I  I  V  N  T  L  F  V  C  I  I  G  I  F  V  G  S  I  S  C  *  P  F  N  *  S  S  N  S  F  G  E  K  H  R  W  D  I  P  N  L  V  T  C  D  V  *  S  L  L  V  F  C  *  G  F  F  S  F  E  K  N  E  E  W  G  T  S  I  *  *  D  F  *  R  V  V  C  W  G  L  A  L  F  T  *  *  I  A  T  W  *  S  C  Y  Y  *  L  Y  L  *  D  A  *  D  V  G  V  Y  W  K  S  C  I  F  V  Y  S  N  L  G  Y  *  V  T  S  A  S  *  Y  R  G  C  Y  *  V  G  L  *  K  K  S  S  E  D  T  C  F  H  P  L  C  I  W :   S  W  K  E  R  C  S  H  V  C  T  V  S  S  S  W  S  S  R  R  L  E  K  C  *  E  I  D  Q  R  K  T  A  I  H  T  N  E  R  S  A  S  Q  S  F  R  G  M  V  E  G  S  S  L  F  P  K  S  W  S  *  F  R  D  S  V  E  C  *  R  P  F  L  I  N  *  L  Q  L  Q  D  Q  L  I  I  *  M  I  G  C  L  S  S  L  L  I  T  H  Y  T  *  *  L  R  F  L  L  L  F  I  K  *  K  R  T  L  L  I  Y  F  L  *  *  K  M  F  D  C  Q  D  C  V  *  H  K  N  S  *  N  Y  F  *  I  L  S  I  *  *  N  C  I  Y  C  V  S  R  F  C  Y  I  L  K  K  Q  L  S  I  I  P  F  F  T  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110080" stop="110707"/>
                    <exon start="113251" stop="113471"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGYNPFEFSTLYLIFRFKNRFFWSRTDMGVGISVLIAIKSVTLFILFATLKNYGYPLLSIPCLYASLVSLLVALAANPSIDLPILLGKNTDGTFPIWSLVMFSPYLYFVRGFSALRRMKSGEPPYSEISEGLYVGGWPCSLDKLPPGNPAIIDCTCEMPRMLEFTGNHAFLCIPTWDTRSPQPADIEVAIKWACRKRAQKIPVFIHCAYGHGRSVAVMCALLVALGLAEDWKNAEKLIKEKRPYIRMNALHRKALEEWSKDRLSSPKVGVSSVILSSANDRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="116879" PGL_stop="118395"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116879" e_stop="117186"/>
            <exon e_start="118321" e_stop="118395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.145" acc_prob="0.981" e_score="0.990"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="116879" e_stop="117186" e_length="308"/>
          </exon>
          <intron i_serial="1" don_prob="0.145" acc_prob="0.981">
            <gDNA_intron_boundary i_start="117187" i_stop="118320" i_length="1134"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="118321" e_stop="118395" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116879" stop="117186"/>
              <exon start="118321" stop="118395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTGAAATATGAGGGTCCAAATGCTGAGAAAGCAGCTATGAAGGCAGTGGATTTTGATGGTGTTGAATTTCATGGAAGGGTGTTGACTGTGAAATTGGATGATGGGAGGAGATTGAAAGAGAAAATAGAGGAGAGGAACACGTGGCATGAGGCGAAGGAGGGGCCCAGGAGAGATTTCAAGAAGGTTCTGGAAATACAGCCGGAGAATTGGCAGGCGGTTGTTCGGGCTTTTGAGAGAATCAAGAAGGTGTTATGCTTACTGGAATACTGAAGTAATCTGCTTGCAGTGCTGTAGTCCCTTAAAAT : CCATCCAGGAAAGAATTTGGCTTGATGGTGAACTACTATGCAAGGAGGGGTGACATGCATCGTGCACGTGAAACC</gDNA_template>
            <first_frame> F  L  K  Y  E  G  P  N  A  E  K  A  A  M  K  A  V  D  F  D  G  V  E  F  H  G  R  V  L  T  V  K  L  D  D  G  R  R  L  K  E  K  I  E  E  R  N  T  W  H  E  A  K  E  G  P  R  R  D  F  K  K  V  L  E  I  Q  P  E  N  W  Q  A  V  V  R  A  F  E  R  I  K  K  V  L  C  L  L  E  Y  *  S  N  L  L  A  V  L  *  S  L  K  I :   H  P  G  K  N  L  A  *  W  *  T  T  M  Q  G  G  V  T  C  I  V  H  V  K   </first_frame>
            <second_frame>  F  *  N  M  R  V  Q  M  L  R  K  Q  L  *  R  Q  W  I  L  M  V  L  N  F  M  E  G  C  *  L  *  N  W  M  M  G  G  D  *  K  R  K  *  R  R  G  T  R  G  M  R  R  R  R  G  P  G  E  I  S  R  R  F  W  K  Y  S  R  R  I  G  R  R  L  F  G  L  L  R  E  S  R  R  C  Y  A  Y  W  N  T  E  V  I  C  L  Q  C  C  S  P  L  K   : S  I  Q  E  R  I  W  L  D  G  E  L  L  C  K  E  G  *  H  A  S  C  T  *  N  </second_frame>
            <third_frame>   F  E  I  *  G  S  K  C  *  E  S  S  Y  E  G  S  G  F  *  W  C  *  I  S  W  K  G  V  D  C  E  I  G  *  W  E  E  I  E  R  E  N  R  G  E  E  H  V  A  *  G  E  G  G  A  Q  E  R  F  Q  E  G  S  G  N  T  A  G  E  L  A  G  G  C  S  G  F  *  E  N  Q  E  G  V  M  L  T  G  I  L  K  *  S  A  C  S  A  V  V  P  *  N  :  P  S  R  K  E  F  G  L  M  V  N  Y  Y  A  R  R  G  D  M  H  R  A  R  E  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116879" stop="117151"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLKYEGPNAEKAAMKAVDFDGVEFHGRVLTVKLDDGRRLKEKIEERNTWHEAKEGPRRDFKKVLEIQPENWQAVVRAFERIKKVLCLLEY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0040B16.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117009" stop="117186"/>
                    <exon start="118321" stop="118373"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRGTRGMRRRRGPGEISRRFWKYSRRIGRRLFGLLRESRRCYAYWNTEVICLQCCSPLKSIQERIWLDGELLCKEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="119265" PGL_stop="119957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119265" e_stop="119957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="119265" e_stop="119957" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119265" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAAGTAGAAAGTTAAACATATCTCTCTTGAACAATTTATGATTATTAATAAGCTTAATGTATGAGCACATATTTTCTTATAACATCACATGCAAGTCAAAACCCTCCAGTATACGGGCAAATATTTTTGTTAACCTCAGTAATTGTCACATTTTTTCTTATATATAAAGTCAGATGCAAGTGATGTTTCTCCGGTATACAGACAAGTATTTTTTGTTAACCTCAATAATCTAAAGTAACATGTTGGATTTTCATATTCAAAGTTCTAGGCATTGAAATCTCTATCATCATTATCAAAAAGTCATCTGATATTCATCATTCTTAGATTTGAGTTGTTTGCACCTAAACTTTCATATAGCATTTCAATGACCAGCAGACTCTAAAGTGATTTTTAATTTACCTTATCAAATATACTTAATGGCTAAGTCTAATAACTTAACAGCCAACTGGTACTGAATAATTGGGTAATCAACCACATTTAGGCTTTAACCTTTGCTCAGTGCCTTACACTGGGGGAGTATCTGTACTGTTCAATTCAGTTGTTTCTTTTCTTTGAAGTGTAGCCCCCTATGGCATCTAAACAACTTAGTCCTACTGCATGCTAGAAAATAAGAAACCTGAAAAAAAAAACTGAATTTCCATGATTGGTAAGTGTAGATGATAATGTCTTTAATGCGGAAAGGAATTGTCTT</gDNA_template>
            <first_frame> *  K  *  K  V  K  H  I  S  L  E  Q  F  M  I  I  N  K  L  N  V  *  A  H  I  F  L  *  H  H  M  Q  V  K  T  L  Q  Y  T  G  K  Y  F  C  *  P  Q  *  L  S  H  F  F  L  Y  I  K  S  D  A  S  D  V  S  P  V  Y  R  Q  V  F  F  V  N  L  N  N  L  K  *  H  V  G  F  S  Y  S  K  F  *  A  L  K  S  L  S  S  L  S  K  S  H  L  I  F  I  I  L  R  F  E  L  F  A  P  K  L  S  Y  S  I  S  M  T  S  R  L  *  S  D  F  *  F  T  L  S  N  I  L  N  G  *  V  *  *  L  N  S  Q  L  V  L  N  N  W  V  I  N  H  I  *  A  L  T  F  A  Q  C  L  T  L  G  E  Y  L  Y  C  S  I  Q  L  F  L  F  F  E  V  *  P  P  M  A  S  K  Q  L  S  P  T  A  C  *  K  I  R  N  L  K  K  K  T  E  F  P  *  L  V  S  V  D  D  N  V  F  N  A  E  R  N  C  L </first_frame>
            <second_frame>  K  S  R  K  L  N  I  S  L  L  N  N  L  *  L  L  I  S  L  M  Y  E  H  I  F  S  Y  N  I  T  C  K  S  K  P  S  S  I  R  A  N  I  F  V  N  L  S  N  C  H  I  F  S  Y  I  *  S  Q  M  Q  V  M  F  L  R  Y  T  D  K  Y  F  L  L  T  S  I  I  *  S  N  M  L  D  F  H  I  Q  S  S  R  H  *  N  L  Y  H  H  Y  Q  K  V  I  *  Y  S  S  F  L  D  L  S  C  L  H  L  N  F  H  I  A  F  Q  *  P  A  D  S  K  V  I  F  N  L  P  Y  Q  I  Y  L  M  A  K  S  N  N  L  T  A  N  W  Y  *  I  I  G  *  S  T  T  F  R  L  *  P  L  L  S  A  L  H  W  G  S  I  C  T  V  Q  F  S  C  F  F  S  L  K  C  S  P  L  W  H  L  N  N  L  V  L  L  H  A  R  K  *  E  T  *  K  K  K  L  N  F  H  D  W  *  V  *  M  I  M  S  L  M  R  K  G  I  V   </second_frame>
            <third_frame>   K  V  E  S  *  T  Y  L  S  *  T  I  Y  D  Y  *  *  A  *  C  M  S  T  Y  F  L  I  T  S  H  A  S  Q  N  P  P  V  Y  G  Q  I  F  L  L  T  S  V  I  V  T  F  F  L  I  Y  K  V  R  C  K  *  C  F  S  G  I  Q  T  S  I  F  C  *  P  Q  *  S  K  V  T  C  W  I  F  I  F  K  V  L  G  I  E  I  S  I  I  I  I  K  K  S  S  D  I  H  H  S  *  I  *  V  V  C  T  *  T  F  I  *  H  F  N  D  Q  Q  T  L  K  *  F  L  I  Y  L  I  K  Y  T  *  W  L  S  L  I  T  *  Q  P  T  G  T  E  *  L  G  N  Q  P  H  L  G  F  N  L  C  S  V  P  Y  T  G  G  V  S  V  L  F  N  S  V  V  S  F  L  *  S  V  A  P  Y  G  I  *  T  T  *  S  Y  C  M  L  E  N  K  K  P  E  K  K  N  *  I  S  M  I  G  K  C  R  *  *  C  L  *  C  G  K  E  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0040B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 31560 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 2104 bytes was the average size of a spliced alignment
$ 21192 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1630 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 29 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:28:31
-->
