<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 14:47:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203362" ref_strand="+" ref_description="SGN-E203362 [cLEB-3-P3](-)">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="3621" stop="107085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12797" g_stop="13301" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E203362" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12797" e_stop="13301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGAGATGGTGCAAAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTCTAGTTTTTGCAACTTGATAAACACTTTTCAAGAACTCTTGCAAAGGCTAATACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTTTTCAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTATTTTTCTACTTTGGCTTGTTGAGCAATAGAGGTTTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCTTTTGAAGATTAGTGAAAACAATTGAAAATCCTATGAGACAGGTC</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCT-CTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATT-GTTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372869" ref_strand="+" ref_description="SGN-E372869 [TUS-32-N20](-)">
      <seq>agaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctttaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="13857" stop="107085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18884" g_stop="19123" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19124" i_stop="21191" i_length="2068">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21192" g_stop="21214" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="263" r_length="23" r_score="0.565"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E372869" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18884" e_stop="19123"/>
          <exon e_start="21192" e_stop="21214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAAGAAAATAATCTGTGAGGAAAAATAGAGAGTGTGAGCGGTATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTCATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATGCAAGTGTAAAATCCTTACTATAGTGATATTTGTTGCTCCTCTCGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCACGTAAAATCTTGGTGTCATTATTTCTCTTTTATTCTCGTTAATTAATCGTATTGTTGTGTTCCGCATTTGTTGCCTTTATTACCGCAAATATTATTTCTGTTACGGATTTATTCCCAACAACTAGTCCCTAAAGAGAATCAGTGACCAACTCGATAATCTGTCCCTAAAGGTCTTTAGCGACTAAAGCTACTCATTCTTATTTAATAGGATTGTTTTGTACCTGTTGGTGGTCTTTGCACGCCCTCCAAATATTTCACTTTTCCTTTCTCTTTCTCTTCTCTTCTAAAATAATTATCTCTTAAAATTGATAAACCCTAGTATTATTTTGATATGGGTTAAGTAGTGCATAGTTTTAAATAAATTATCATTTTAACCCATTAACTATCGATTAATTACTCATGTTACATTAATATTTAAAATTTTCAAAAATGACTTTTCGGGTCATTACAACCTCCTTAGCTATAAATATTGTAACAAATGAAAGAATTAGATAAATTTTCAAAGTTGAGATGCATATTAAAAAAGCTCTTTGATAATCATTAGTACTGCATGAACATATATTAAAAAAATTAGTATTTTCTGAACAAATCCTACAATAAACGTGCAACAAGATCATAATAAAACTGAAAATAAGAGAACAATGTAAACTTTTATACACCATCGCGTTAATTACATTGATGTGAATACAAATAAACAATAAATTAAACCCACGAACAGTTATTAAACATTAGTGTTAGGCAATCTTGGGAACAAGGCCAGGGTAAATATTATCATCATGATTGATGTAACTATAACCTATCAATATAAATAAATCACCGTACTTTTCAGATATTATTTGACCTAAGTATATTTTATCGCACAAAGCTAGTTGTTGATCGTCTTCTTTAAAATTTCAATCTTCCCAGAAAAAGCAACAAAAACATAAGAAGGATAGTTGAGAAATTGAAGTAATTTCTTGAGGAAGTCATAATATGTGTGAAACTAAATAGATTAATTAATGTTGTACTAAGTATTTATAAGAAAAATAATTAGTACGTGGGGCTGCTCCACGTCCCTAATATTTGGGTTGGGACGTGAGCAGTAATTTACTTCATTTCCACAAATTGCCTTTTTTATTTATTTAAATAACAAAAATTCCATCTTTAAATTTTTATTATTATCATTATTCCCAGTTAGTTTTATAAATTTCTAAAATTTCTTATTTTTACGTCGCAGATTAATATATCAACGCATCAAATTAATGTATCATGTATATCAGATTAATGTATCTCACGCATCACATTAGTGTATCATATATAAGACTATCTCCAACTCACCTCTATTTTGCTTTCCATTATCTATATTTGGAGAGTAAAATAGAGAACGGACACTCCAACTCATCTCTATATCATTATCTATTATTCAAATATAGAGATTGTGAATAGTAATTCTCCAACTATTCACACTCTCTATTTTATTTTTTGACTTTTTTATTATTTTTTCAATTACTTTCTAATTAATTTATTTTACATATAATGCCACTTAAAAATCTAATATCCATACTTCTTTTTAAATGTAATATATATTTTTAAAAATATATTATTTAATATATTATACTTTCATCCGAATAATAGTATTTTAATTTTTTTTTAATTTTCGCCAATGATATAATTTAATTTTATAATTAATTTTCACTATAAAGAATAAACACAATAAAAATGATAAGCTGAAAATTTTAATTTAAAAATAAAATATATAATATAATAATTTAAATATAATATAATAATACAATGCATTATATTATAATTTAAATACAAAATAAAATACTATACATAACATAATAATTAATTCTTGTATTTACAATCACAAAGGAGTGTTTCTTCGAAAAAGGTATTTTTTGTGTGCGTTTTTATGGGTTTCATCTTCTTGATTATTCTAATTGTCAGTTTTTCTGTGTCTTCTTAGTAATTTAATTTTATAATTTCTTTTAATATTCTAATTGTCAGTTTTTCTGTGTCTTCTTAGTAATTTAATTTTATAATTTCTTTTAATATGTGCGTTTAAATTGTTGTCTTGTGTTACTATTAAGCTTCACAAAGAAACGAAATCGAA</genome_strand>
        <mrna_strand>AGAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTTTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372870" ref_strand="+" ref_description="SGN-E372870 [TUS-32-N20]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="18585" stop="158964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18885" g_stop="19123" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19124" i_stop="21191" i_length="2068">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21192" g_stop="21215" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="263" r_length="24" r_score="0.542"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E372870" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18885" e_stop="19123"/>
          <exon e_start="21192" e_stop="21215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAAGAAAATAATCTGTGAGGAAAAATAGAGAGTGTGAGCGGTATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTCATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATGCAAGTGTAAAATCCTTACTATAGTGATATTTGTTGCTCCTCTCGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCACGTAAAATCTTGGTGTCATTATTTCTCTTTTATTCTCGTTAATTAATCGTATTGTTGTGTTCCGCATTTGTTGCCTTTATTACCGCAAATATTATTTCTGTTACGGATTTATTCCCAACAACTAGTCCCTAAAGAGAATCAGTGACCAACTCGATAATCTGTCCCTAAAGGTCTTTAGCGACTAAAGCTACTCATTCTTATTTAATAGGATTGTTTTGTACCTGTTGGTGGTCTTTGCACGCCCTCCAAATATTTCACTTTTCCTTTCTCTTTCTCTTCTCTTCTAAAATAATTATCTCTTAAAATTGATAAACCCTAGTATTATTTTGATATGGGTTAAGTAGTGCATAGTTTTAAATAAATTATCATTTTAACCCATTAACTATCGATTAATTACTCATGTTACATTAATATTTAAAATTTTCAAAAATGACTTTTCGGGTCATTACAACCTCCTTAGCTATAAATATTGTAACAAATGAAAGAATTAGATAAATTTTCAAAGTTGAGATGCATATTAAAAAAGCTCTTTGATAATCATTAGTACTGCATGAACATATATTAAAAAAATTAGTATTTTCTGAACAAATCCTACAATAAACGTGCAACAAGATCATAATAAAACTGAAAATAAGAGAACAATGTAAACTTTTATACACCATCGCGTTAATTACATTGATGTGAATACAAATAAACAATAAATTAAACCCACGAACAGTTATTAAACATTAGTGTTAGGCAATCTTGGGAACAAGGCCAGGGTAAATATTATCATCATGATTGATGTAACTATAACCTATCAATATAAATAAATCACCGTACTTTTCAGATATTATTTGACCTAAGTATATTTTATCGCACAAAGCTAGTTGTTGATCGTCTTCTTTAAAATTTCAATCTTCCCAGAAAAAGCAACAAAAACATAAGAAGGATAGTTGAGAAATTGAAGTAATTTCTTGAGGAAGTCATAATATGTGTGAAACTAAATAGATTAATTAATGTTGTACTAAGTATTTATAAGAAAAATAATTAGTACGTGGGGCTGCTCCACGTCCCTAATATTTGGGTTGGGACGTGAGCAGTAATTTACTTCATTTCCACAAATTGCCTTTTTTATTTATTTAAATAACAAAAATTCCATCTTTAAATTTTTATTATTATCATTATTCCCAGTTAGTTTTATAAATTTCTAAAATTTCTTATTTTTACGTCGCAGATTAATATATCAACGCATCAAATTAATGTATCATGTATATCAGATTAATGTATCTCACGCATCACATTAGTGTATCATATATAAGACTATCTCCAACTCACCTCTATTTTGCTTTCCATTATCTATATTTGGAGAGTAAAATAGAGAACGGACACTCCAACTCATCTCTATATCATTATCTATTATTCAAATATAGAGATTGTGAATAGTAATTCTCCAACTATTCACACTCTCTATTTTATTTTTTGACTTTTTTATTATTTTTTCAATTACTTTCTAATTAATTTATTTTACATATAATGCCACTTAAAAATCTAATATCCATACTTCTTTTTAAATGTAATATATATTTTTAAAAATATATTATTTAATATATTATACTTTCATCCGAATAATAGTATTTTAATTTTTTTTTAATTTTCGCCAATGATATAATTTAATTTTATAATTAATTTTCACTATAAAGAATAAACACAATAAAAATGATAAGCTGAAAATTTTAATTTAAAAATAAAATATATAATATAATAATTTAAATATAATATAATAATACAATGCATTATATTATAATTTAAATACAAAATAAAATACTATACATAACATAATAATTAATTCTTGTATTTACAATCACAAAGGAGTGTTTCTTCGAAAAAGGTATTTTTTGTGTGCGTTTTTATGGGTTTCATCTTCTTGATTATTCTAATTGTCAGTTTTTCTGTGTCTTCTTAGTAATTTAATTTTATAATTTCTTTTAATATTCTAATTGTCAGTTTTTCTGTGTCTTCTTAGTAATTTAATTTTATAATTTCTTTTAATATGTGCGTTTAAATTGTTGTCTTGTGTTACTATTAAGCTTCACAAAGAAACGAAATCGAAG</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378778" ref_strand="+" ref_description="SGN-E378778 [TUS-32-N20]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="18585" stop="158964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18885" g_stop="19123" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19124" i_stop="21191" i_length="2068">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21192" g_stop="21215" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="263" r_length="24" r_score="0.542"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E378778" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18885" e_stop="19123"/>
          <exon e_start="21192" e_stop="21215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAAGAAAATAATCTGTGAGGAAAAATAGAGAGTGTGAGCGGTATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTCATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATGCAAGTGTAAAATCCTTACTATAGTGATATTTGTTGCTCCTCTCGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCACGTAAAATCTTGGTGTCATTATTTCTCTTTTATTCTCGTTAATTAATCGTATTGTTGTGTTCCGCATTTGTTGCCTTTATTACCGCAAATATTATTTCTGTTACGGATTTATTCCCAACAACTAGTCCCTAAAGAGAATCAGTGACCAACTCGATAATCTGTCCCTAAAGGTCTTTAGCGACTAAAGCTACTCATTCTTATTTAATAGGATTGTTTTGTACCTGTTGGTGGTCTTTGCACGCCCTCCAAATATTTCACTTTTCCTTTCTCTTTCTCTTCTCTTCTAAAATAATTATCTCTTAAAATTGATAAACCCTAGTATTATTTTGATATGGGTTAAGTAGTGCATAGTTTTAAATAAATTATCATTTTAACCCATTAACTATCGATTAATTACTCATGTTACATTAATATTTAAAATTTTCAAAAATGACTTTTCGGGTCATTACAACCTCCTTAGCTATAAATATTGTAACAAATGAAAGAATTAGATAAATTTTCAAAGTTGAGATGCATATTAAAAAAGCTCTTTGATAATCATTAGTACTGCATGAACATATATTAAAAAAATTAGTATTTTCTGAACAAATCCTACAATAAACGTGCAACAAGATCATAATAAAACTGAAAATAAGAGAACAATGTAAACTTTTATACACCATCGCGTTAATTACATTGATGTGAATACAAATAAACAATAAATTAAACCCACGAACAGTTATTAAACATTAGTGTTAGGCAATCTTGGGAACAAGGCCAGGGTAAATATTATCATCATGATTGATGTAACTATAACCTATCAATATAAATAAATCACCGTACTTTTCAGATATTATTTGACCTAAGTATATTTTATCGCACAAAGCTAGTTGTTGATCGTCTTCTTTAAAATTTCAATCTTCCCAGAAAAAGCAACAAAAACATAAGAAGGATAGTTGAGAAATTGAAGTAATTTCTTGAGGAAGTCATAATATGTGTGAAACTAAATAGATTAATTAATGTTGTACTAAGTATTTATAAGAAAAATAATTAGTACGTGGGGCTGCTCCACGTCCCTAATATTTGGGTTGGGACGTGAGCAGTAATTTACTTCATTTCCACAAATTGCCTTTTTTATTTATTTAAATAACAAAAATTCCATCTTTAAATTTTTATTATTATCATTATTCCCAGTTAGTTTTATAAATTTCTAAAATTTCTTATTTTTACGTCGCAGATTAATATATCAACGCATCAAATTAATGTATCATGTATATCAGATTAATGTATCTCACGCATCACATTAGTGTATCATATATAAGACTATCTCCAACTCACCTCTATTTTGCTTTCCATTATCTATATTTGGAGAGTAAAATAGAGAACGGACACTCCAACTCATCTCTATATCATTATCTATTATTCAAATATAGAGATTGTGAATAGTAATTCTCCAACTATTCACACTCTCTATTTTATTTTTTGACTTTTTTATTATTTTTTCAATTACTTTCTAATTAATTTATTTTACATATAATGCCACTTAAAAATCTAATATCCATACTTCTTTTTAAATGTAATATATATTTTTAAAAATATATTATTTAATATATTATACTTTCATCCGAATAATAGTATTTTAATTTTTTTTTAATTTTCGCCAATGATATAATTTAATTTTATAATTAATTTTCACTATAAAGAATAAACACAATAAAAATGATAAGCTGAAAATTTTAATTTAAAAATAAAATATATAATATAATAATTTAAATATAATATAATAATACAATGCATTATATTATAATTTAAATACAAAATAAAATACTATACATAACATAATAATTAATTCTTGTATTTACAATCACAAAGGAGTGTTTCTTCGAAAAAGGTATTTTTTGTGTGCGTTTTTATGGGTTTCATCTTCTTGATTATTCTAATTGTCAGTTTTTCTGTGTCTTCTTAGTAATTTAATTTTATAATTTCTTTTAATATTCTAATTGTCAGTTTTTCTGTGTCTTCTTAGTAATTTAATTTTATAATTTCTTTTAATATGTGCGTTTAAATTGTTGTCTTGTGTTACTATTAAGCTTCACAAAGAAACGAAATCGAAG</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298763" ref_strand="+" ref_description="SGN-E298763 [cLET-44-E9]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="18585" stop="19424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18885" g_stop="19123" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E298763" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18885" e_stop="19123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAAGAAAATAATCTGTGAGGAAAAATAGAGAGTGTGAGCGGTATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTCATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATGCAAGTGTAAAATCCTTACTATAGTGATATTTGTTGCTCCTCTCGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394139" ref_strand="+" ref_description="SGN-E394139 [TUS-40-P7]">
      <seq>gagagagtaatccacaaactacttcttaatttgtgaaaaaatagtgtgcaagtaatattattgtgagttgtaaaaataaaaaagtgttgaatagtagtcttttgacactaccaagtttttcatcaatatattgtattacttattcgggtatcatatttacccatttaatatttggtgtcgttgttactctcttcctattgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="23368" stop="24173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23667" g_stop="23873" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E394139" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23667" e_stop="23873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTAGTCCACAAACTACTTCTTAGTTTGTGAGAAAATAGTGTGGAAGTAATATTATTGTGAGTTGTAAAAAATAAAAAAGTGTGGAGTAGTAGTCATTTGACACTACAAAAATTTTCATCAATTTTATTGTATTACTTATTCGGGTATCATATTTACTCATTTTAATATTTGGTGTCGTTGTTACTCTCTTCCTATTGCTAT</genome_strand>
        <mrna_strand>GAGAGAGTAATCCACAAACTACTTCTTAATTTGTGAAAAAATAGTGTGCAAGTAATATTATTGTGAGTTGT-AAAAATAAAAAAGTGTTGAATAGTAGTCTTTTGACACTACCAAGTTTTTCATCAA-TATATTGTATTACTTATTCGGGTATCATATTTACCCA-TTTAATATTTGGTGTCGTTGTTACTCTCTTCCTATTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577845" ref_strand="+" ref_description="SGN-E577845 [LE08AD04]">
      <seq>actcctttatttgaattaaaacttgatagaaaaacatcttccaaggctacccagatactcgacaaggtctggatggagtcgaggtccagttgctgacgctgatctttgcctccttgcttccactagggccccctttctcctcctcgttgatcacgacgttgcaaactttcccttcttctttggttagcgataaccccttcaagtcgtctgagatctcatcaatattgtctcccatgaaacctgctaatcgaaatgattgatacaatggcggtatgggtttcttcaatggatagtagtacccatctctaggtggtcgccaatcgagccattcttcggtggtgtatttataacccaaaccaaaagtggtggaatgtcgaacaggctgtataggttcgactatcccttgtaatttagcccccaaacctttcccaagctcgaaaccgaaccaggccatcatatctatgattttttggctgaaccaaggttgcaactcaatattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="33100" stop="34178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33373" g_stop="33878" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E577845" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33373" e_stop="33878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTTTAATTTGAATTAAAACTTGATTTAAAAAAAACATCTTCCAAGGCTACCCAGATGCTCGACGAGGTATGGATGGAGTTGAGGTCCAGTTGCTGACGCTGATCTTTGCTTCCTTGATTCCACTAGGGCCCTCTTTCTCCTCCTCGTTGATCATGACGTTGCAAACTTTCCCCTCTTCTTTGGTTAGTGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATACTACCTCCCATGAAACCTGCTGATCGAAATGATTGATGCAATGGCGGTATGGGTTTCTTCAGTGGATAGTAGTACCCATCCCTAGGTGGTTTCCAATTGAGCCATTCTTCGGTAGTGTACTTATATCCCAAACCAAAAGTGGTGGAATGTCGAACAGACTATACATGTTCGACTATCCCTTGCAATTCAGCCCCTAAACCTTTCCCAAGATCGAAACTGAACCAGACCATCATATCTATAATTTTTTCGCTGAACCAAGGTTGCAACTCAATATTACC</genome_strand>
        <mrna_strand>ACTCCTTT-ATTTGAATTAAAACTTGA--T-AGAAAAACATCTTCCAAGGCTACCCAGATACTCGACAAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTAATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331029" ref_strand="+" ref_description="SGN-E331029 [cTOD-6-I3]">
      <seq>aaaaacacacaccactactggcatttttgaactattacatgttgacatctggggtccatatcaaacaacaactcatgataacttcaagtatttcattaccttagtagatgactttagtaaatctacctggacacaacttctaagctgtaaaagcaatgctttccatgtccttaaagcctttatactcatggttgagaaccagttcagcaccactgttaaaaccatcagatcagataatggtttggaattcactagcaatgaaaccactctattttttcaatccaaagggatcatccatcagaaatcctgcccctatactcctcaacaaaatggtgtggtcgaaagaaagcacaaatttattcttgaaacagcaagggctctactttttcagtctaaactcccagtgaaatattggagtgaatgtaacttgcttccacatatcttataaatagactaccttcttttcctctccacaataaaactccatatgaaattttatataaacacaaacctatctactctcacctaaagagttttggatgtttatgttatcctactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="44426" stop="43266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44126" g_stop="43566" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E331029" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44126" e_stop="43566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTCACACCACTACTGTCATTTTTGAACTATTACATGTTGATATTTGGGGTCCATATCAAACACTAACTCATGACAACTTCAAATACTTCATTACCTTAGTAGATGATTTTAGTAAATCTACCTGGACACATCTTCTAAGCTGTAAAAGCAATGTTTTTCATATACTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAACACCACTGTTAAAACCATCAGATCAGATAATGGTTTAGAATTCACTAGTAGTGAAACCACTTTGTTCTTCCAATCAAAAGGGATCATTCATCAGAAATCTTGTCCTTATACTCCTCAACAAAATGGTGTGGTCAAAAGAAAGCACAAATATATTCTTGAAACAGCAAGGGCTCTTCTTTTCCAGTCTAAACTCCCAGTGAAATATTGGGGTGAACGTATACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCATAATAAAACTCCCTATGATATCTTATATAAACACAAACCTACCTACTCACACTTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</genome_strand>
        <mrna_strand>AAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTA-ACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="49388" stop="48488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49088" g_stop="48788" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49088" e_stop="48788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAAGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTCGTGTGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTAATAAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCACTTCCCTCAACATGTTTGCAAACTCCAGAAGTGTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTAGTACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="49813" stop="48729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49513" g_stop="49029" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49513" e_stop="49029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCA-CCACAATACACCCGTAACCACTACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTGTGGGTCCTTCCTGGCCATCCCTAAATCACCACCACCCGTGCCACCCCCCACTACTCATCCCATGTTAACCCGTGGCAAAGCCAGTATCTTTAAACCCAAAACCTTTCAGGCTATCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTTTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGGTCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAAGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455576" ref_strand="+" ref_description="SGN-E455576 [cSTS-26-P5]">
      <seq>gaaaaatagaggagatttaaactgttgcttaaacggcattttaacgtgggttggggaatatttagaattgttataaatagtcaaccatggagatttccaattatacatctaccataaagcaaaataaacaagtagcaaaataagaaaccaaaaatcgaaaatgaagaagcttatcttcctaattttcaacataattatgctttcaatcggcaattgcggtggtcctttaatctctcgactctatttcattcatggcggccaacgaatttggatacccagcgtattacaaactgttggttgtccaattattctcatccctctagccatagcctatttccaacgccggaaaattcaaggacccgaggctaaaatcgtctttatcacacggcaagagttcatcgcatctgccggcgtcggaatcatcgtcggtctcgatggttacttaaactcatggggacccgcgaaattacccgtttcaacttcgactctaatcaacgcgactcaacttgcgttcactgcgctttttgctgtgcttatagttaaacagaaattgacagcgtattcgacgaattccgtcgttttgcttatcgccggagctgcgactntagctctccgggcgaacggtgaccggccggccggcgagtccacgaaggattatatgttggggtttgtgatgacgtttatcggtgcggtgttatatggattgatgttgccgttaattgagttgatttatatgaaaggcgaagcagctgttacttacactacagtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="105140" stop="106480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105422" g_stop="106180" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E455576" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105422" e_stop="106180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATATAAAAATGAAAATACTGTTGCGAAAACGGCATTTTAACGTGGGTTGGGGAATATTTGGAATTGTTATAAATAGTCAACCATGGAGATTTCCATTTATACATTTACGATAAACCAAAAT----AA---GCAACA-------CCAAAAATCGAAAATGAAGAAGCTTATCTTCCTAATTTTCAACATAATTATGCTTTCCATCGGCAATTGCGGTGGCCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGTAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGTATCATCGTCGGACTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGAGCGAACGGTGACCGCCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATG-AAGTCGAAGCAAGCTGTTACTTACATTACTGTATTG</genome_strand>
        <mrna_strand>GAAAAATAGAGGAGATTTAA-ACTGTTGCTTAAACGGCATTTTAACGTGGGTTGGGGAATATTTAGAATTGTTATAAATAGTCAACCATGGAGATTTCCAATTATACATCTACCATAAAGCAAAATAAACAAGTAGCAAAATAAGAAACCAAAAATCGAAAATGAAGAAGCTTATCTTCCTAATTTTCAACATAATTATGCTTTCAATCGGCAATTGCGGTGGTCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAATTATTCTCATCCCTCTAGCCATAGCCTATTTCCAACGCCGGAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGCGTCGGAATCATCGTCGGTCTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAACTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTTAAACAGAAATTGACAGCGTATTCGACGAATTCCGTCGTTTTGCTTATCGCCGGAGCTGCGACTNTAGCTCTCCGGGCGAACGGTGACCGGCCGGCCGGCGAGTCCACGAAGGATTATATGTTGGGGTTTGTGATGACGTTTATCGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATTTATATGAAAGGCGAAGC-AGCTGTTACTTACACTACAGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456469" ref_strand="+" ref_description="SGN-E456469 [cSTS-29-J21]">
      <seq>cgaggatgtagccaaataagaaacccaaaaatcgaaaatgaagaaagcttatcttcctaattttcaacaataattatgcctttcaatcggcaattgcggtggtcctttaatctctcgactctatttcattcatggcggccaacgaatttggatacccagcgtattacaaactgttggttgtccaattattctcatccctctagccatagcctatttccaacgccggaaaattcaaggacccgaggctaaaatcgtctttatcacacggcaagaagttcatcgcatctgccggcgtcggaatcatcgtcggtctcgatggttacttaaactcatggggacccgcgaaattacccgtttcaacttcgacactaatcaacgcgactcaacttgcgttcactgcgctttttgctgtgcttatagttaaacagaaattgacagcgtattcgacgaattccgtcgttttgcttatcgccggagctgcgactttagctctccgggcgaacggtgaccggccggccggcgagtccacgaaggattatatgttggggtttgtgatgacgtttatcggtgcggtgttatatggattgatgttgccgttaattgagttgatttatatgaaggcgaagcaagctgttacttacactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="105233" stop="106473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105531" g_stop="106173" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E456469" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105531" e_stop="106173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGATAAACCAAAATAAGCAACACCAAAAATCGAAAATGAAG-AAGCTTATCTTCCTAATTTTCAAC-ATAATTATG-CTTTCCATCGGCAATTGCGGTGGCCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGTAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAG-AGTTCATCGCATCTGCCGGAGTCGGTATCATCGTCGGACTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGAGCGAACGGTGACCGCCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTAC</genome_strand>
        <mrna_strand>CGAGGATGTAGCCAAATAAGAAAC-CCAAAAATCGAAAATGAAGAAAGCTTATCTTCCTAATTTTCAACAATAATTATGCCTTTCAATCGGCAATTGCGGTGGTCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAATTATTCTCATCCCTCTAGCCATAGCCTATTTCCAACGCCGGAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAAGTTCATCGCATCTGCCGGCGTCGGAATCATCGTCGGTCTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACACTAATCAACGCGACTCAACTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTTAAACAGAAATTGACAGCGTATTCGACGAATTCCGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCTCTCCGGGCGAACGGTGACCGGCCGGCCGGCGAGTCCACGAAGGATTATATGTTGGGGTTTGTGATGACGTTTATCGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATTTATATGAAGGCGAAGCAAGCTGTTACTTACACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728962" ref_strand="+" ref_description="SGN-E728962 [LA19CB05]">
      <seq>ccaaaataagcaacaccaaaaatcgaaaatgaagaagcttatcttcctaattttcaacataattatgctttccatcggcaattgcggtggccctttaatctctcgactctatttcattcatggcggccaacgaatttggatacccagcgtattacaaactgttggttgtccagttattctcatccctttagccattgcctattttcaacgccggaaaattcaaggacccgaggctaaaatcgtctttatcacacggcaagagttcatcgcatctgccggagtcggaatcatcgtcggactcgatggttacttaaactcatggggacccgcaaaattacccgtttcaacttcgactctaatcaacgcgactcagcttgcgttcactgcgctttttgctgtgcttatagtcaaacagaaattgactgcgtattcgacgaattcagtcgttttgcttatcgccggagctgcgactttagccctccgggcgaacggtgaccggccggccggcgagtcggcgaaggattatatgttggggtttgtgatgacgtttgttggtgcggtgttatatggattgatgttgccgttaattgagttgatctatatgaagtcgaagcaagctgttacttacattactgtattggagattcagatggttctgggaatttctgctactgtcttttgtactattggaatgattatcaacaaggatttccaggcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="105241" stop="106556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105541" g_stop="106255" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E728962" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105541" e_stop="106255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATAAGCAACACCAAAAATCGAAAATGAAGAAGCTTATCTTCCTAATTTTCAACATAATTATGCTTTCCATCGGCAATTGCGGTGGCCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGTAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGTATCATCGTCGGACTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGAGCGAACGGTGACCGCCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTACTGTATTGGAGATTCAGATGGTTCTGGGAATTTCTGCTACTGTCTTTTGTACTATTGGAATGATTATCAACAAGGATTTCCAG</genome_strand>
        <mrna_strand>CCAAAATAAGCAACACCAAAAATCGAAAATGAAGAAGCTTATCTTCCTAATTTTCAACATAATTATGCTTTCCATCGGCAATTGCGGTGGCCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGGAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGAATCATCGTCGGACTCGATGGTTACTTAAACTCATGGGGACCCGCAAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGGGCGAACGGTGACCGGCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTACTGTATTGGAGATTCAGATGGTTCTGGGAATTTCTGCTACTGTCTTTTGTACTATTGGAATGATTATCAACAAGGATTTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459107" ref_strand="+" ref_description="SGN-E459107 [cPRO-33-I10]">
      <seq>caaaataagaaacccaaaaatcgaaaatgaagaagcttatcttcctaattttcaacataattatgctttcaatcggcaattgcggtggtcctttaatctctcgactctatttcattcatggcggccaacgaatttggatacccagcgtattacaaactgttggttgtccaattattctcatccctctagccatagcctatttccaacgccggaaaattcaaggacccgaggctaaaatcgtctttatcacacggcaagagttcatcgcatctgccggcgtcggaatcatcgtcggtctcgatggttacttaaactcatggggacccgcgaaattacccgtttcaacttcgacactaatcaacgcgactcaacttgcgttcactgcgctttttgctgtgcttatagttaaacagaaattgacagcgtattcgacgaattccgtcgttttgcttatcgccggagctgcgactttagctctccgggcgaacggtgaccggccggccggcgagtccacgaaggattatatgttggggtttgtgatgacgtttatcggtgcggtgttatatggattgatgttgccgttaattgagttgatttatatgaaggcgaagcaagctgttacttacactacagtattggagattcagatggttttgggcatttctgctactgttttttgcactattggaatggttatcaacaaggatttccaggcgaatccaagggaagcaagtcaatatgcaattggagaatctaagtattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="105242" stop="108086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105542" g_stop="106255" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106256" i_stop="107734" i_length="1479">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107735" g_stop="107786" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="765" r_length="52" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E459107" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105542" e_stop="106255"/>
          <exon e_start="107735" e_stop="107786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATAAGCAACACCAAAAATCGAAAATGAAGAAGCTTATCTTCCTAATTTTCAACATAATTATGCTTTCCATCGGCAATTGCGGTGGCCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGTAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGTATCATCGTCGGACTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGAGCGAACGGTGACCGCCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTACTGTATTGGAGATTCAGATGGTTCTGGGAATTTCTGCTACTGTCTTTTGTACTATTGGAATGATTATCAACAAGGATTTCCAGGTACATATTATACACTTCTTCACTCAATTTCTGCAGCAAATCCAATTTCAGATAAACATAATTTTGAAACTTACAACCATCTTTCAATTAATTAAAATTTTAATTCTATACTATTACATTTAAATTAACAATTTTAAATAAATTTTGAAATAAATATCTAACAATTCGATCAAATCCGCATTGGGGTCTATTATGTCTATCTACTGAGTGTGATCCATCCGCTAGAATAAGTACACCAATTATAATCTTCCACCTGTCTTGTCTTTTGAATATTTACACGGTGGGTCCTTCGTCAATTAATCGTTTTAAAAATGCAGGTTTCAAAAATATCAATTTATTTATTGTAACAGAAAAAGAATATTTGTTTCTATTTTTTTTAAAAAATGAAAATGTTTTAACTACAATAATCAATTTCTTTATTTCACACACCTACAAACTCGAGTATGATTACCACAAATTATAATTTTTATAGATAAATTTAAATTAATCAAAATTTAATACGAATATATAAAAAAAAAAAAAAAAAAGAAGTAACTGAGTAATTGTTTAGCCCATGTTCTGATTGGCCAGGCAGGCTCCCCATTTCTAGCTGTCATATGAGTTTTTTCGTCCGTACATTAAATAAGGATAGAGTTTCCTACATTTTCTTTTTTCAAAGCGGAGCATATGACAAGCAAATATAATCTTTTTCATATTAATATGATAAAAGTATAATTTTTAAAAATTATATAAATTAATTCCTAAAAAATAAAATTTGATAAGATAGTGCATAATAATAAACTTATTTACCTCTACTCTTGTACCTACTTATGTATTGTAGAAAACAAATGTTACACTTAAAAGGAAAAACTATTTTTGATAAAGCTAATATTTTTACCATTGTTGTTAACTCTTTTCTAATGTCTAAACTTGTTTCTTTCCTTTCATATCAATTATTTTCCTCCTACCTTCTCTTTTTTTTTTTTTTTTTACTTTGGGAAACTAATTAAAATGGAAGAAAATTAATTAGATTTGCAAACTCTAATTTCTAAAGCTAATCTTTTTGTTAAATGTAGTTTCATTTGCATTATTAACATCATATTTAGAATTTTTACACCATACGTGCACTACTAAAATTGAAGAAAGAAGATTTTATTTTTTCTAAGTAGGTATTGGTCGTCATTTCTTTAGGTAAAATTACTCTAATAGTCGGTAGATAATAGTAAATTAAATTTAAAAAATTTATATATAAAATACCCATTCACTAAAGTAATTATAAAATACGCTGTAAATCCGCTCTTGTAAATGCAATGCAAGTGCGCGCATCTAATAATAAATAAGAGAACAAATTCATATGGTTTGTGCTTTCTGTTCTGACAAAGAAAAAGAACGAATTTTCCCTCTATTCTATACTTTTTAAGAAATAATTCTATGCTTTCACGTGAGTTTATTCAAGTTGGATTAGAAAGAATAAATAACAGTAACGACTTATTTTGACAGGCGATTCCAAGGGAAGCAAGTCAATATACAATTGGAGAATCTAAATATTATA</genome_strand>
        <mrna_strand>CAAAATAAGAAAC-CCAAAAATCGAAAATGAAGAAGCTTATCTTCCTAATTTTCAACATAATTATGCTTTCAATCGGCAATTGCGGTGGTCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAATTATTCTCATCCCTCTAGCCATAGCCTATTTCCAACGCCGGAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGCGTCGGAATCATCGTCGGTCTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACACTAATCAACGCGACTCAACTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTTAAACAGAAATTGACAGCGTATTCGACGAATTCCGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCTCTCCGGGCGAACGGTGACCGGCCGGCCGGCGAGTCCACGAAGGATTATATGTTGGGGTTTGTGATGACGTTTATCGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATTTATATGAAGGCGAAGCAAGCTGTTACTTACACTACAGTATTGGAGATTCAGATGGTTTTGGGCATTTCTGCTACTGTTTTTTGCACTATTGGAATGGTTATCAACAAGGATTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAATCCAAGGGAAGCAAGTCAATATGCAATTGGAGAATCTAAGTATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717615" ref_strand="+" ref_description="SGN-E717615 [FC02BA02]">
      <seq>aatcggccgaattaccaaaaatcgaaaatgaagaagcttatcttcctaattttcaacataattatgctttccatcggcaattgcggtggccctttaatctctcgactctatttcattcatggcggccaacgaatttggatacccagcgtattacaaactgttggttgtccagttattctcatccctttagccattgcctattttcaacgccgtaaaattcaaggacccgaggctaaaatcgtctttatcacacggcaagagttcatcgcatctgccggagtcggaatcatcgtcggactcgacggttacttaaactcatggggacccgcgaaattacccgtttcaacttcgactctaatcaacgcgactcagcttgcgttcactgcgctttttgctgtgcttatagtcaaacagaaattgactgcgtattcgacgaattcagtcgttttgcttatcgccggagctgcgactttagccctccgggcgaacggtgaccgtccggccggcgagtcggcgaaggattatatgttggggtttgtgatgacgtttgttggtgcggtgttatatggattgatgttgccgttaattgagttgatctatatgaagtcgaagcaagctgttacttacattactgtattggagattcagatggttctgggaatttctgctactgttttttgcactattggaatgattatcaacaaggatttccaggcgattccaagggaagcaagtcaatatacaattggagaatctaaatattatatggtactcgtattgtgcgctataatttggcaattcgcgctcatgggtttggttggagttattttttattcttcgtctttactctctggaattataggcgcttttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="105250" stop="108194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105555" g_stop="106255" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="714" r_length="701" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106256" i_stop="107734" i_length="1479">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107735" g_stop="107894" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="874" r_length="160" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E717615" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105555" e_stop="106255"/>
          <exon e_start="107735" e_stop="107894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAATCGAAAATGAAGAAGCTTATCTTCCTAATTTTCAACATAATTATGCTTTCCATCGGCAATTGCGGTGGCCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGTAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGTATCATCGTCGGACTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGAGCGAACGGTGACCGCCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTACTGTATTGGAGATTCAGATGGTTCTGGGAATTTCTGCTACTGTCTTTTGTACTATTGGAATGATTATCAACAAGGATTTCCAGGTACATATTATACACTTCTTCACTCAATTTCTGCAGCAAATCCAATTTCAGATAAACATAATTTTGAAACTTACAACCATCTTTCAATTAATTAAAATTTTAATTCTATACTATTACATTTAAATTAACAATTTTAAATAAATTTTGAAATAAATATCTAACAATTCGATCAAATCCGCATTGGGGTCTATTATGTCTATCTACTGAGTGTGATCCATCCGCTAGAATAAGTACACCAATTATAATCTTCCACCTGTCTTGTCTTTTGAATATTTACACGGTGGGTCCTTCGTCAATTAATCGTTTTAAAAATGCAGGTTTCAAAAATATCAATTTATTTATTGTAACAGAAAAAGAATATTTGTTTCTATTTTTTTTAAAAAATGAAAATGTTTTAACTACAATAATCAATTTCTTTATTTCACACACCTACAAACTCGAGTATGATTACCACAAATTATAATTTTTATAGATAAATTTAAATTAATCAAAATTTAATACGAATATATAAAAAAAAAAAAAAAAAAGAAGTAACTGAGTAATTGTTTAGCCCATGTTCTGATTGGCCAGGCAGGCTCCCCATTTCTAGCTGTCATATGAGTTTTTTCGTCCGTACATTAAATAAGGATAGAGTTTCCTACATTTTCTTTTTTCAAAGCGGAGCATATGACAAGCAAATATAATCTTTTTCATATTAATATGATAAAAGTATAATTTTTAAAAATTATATAAATTAATTCCTAAAAAATAAAATTTGATAAGATAGTGCATAATAATAAACTTATTTACCTCTACTCTTGTACCTACTTATGTATTGTAGAAAACAAATGTTACACTTAAAAGGAAAAACTATTTTTGATAAAGCTAATATTTTTACCATTGTTGTTAACTCTTTTCTAATGTCTAAACTTGTTTCTTTCCTTTCATATCAATTATTTTCCTCCTACCTTCTCTTTTTTTTTTTTTTTTTACTTTGGGAAACTAATTAAAATGGAAGAAAATTAATTAGATTTGCAAACTCTAATTTCTAAAGCTAATCTTTTTGTTAAATGTAGTTTCATTTGCATTATTAACATCATATTTAGAATTTTTACACCATACGTGCACTACTAAAATTGAAGAAAGAAGATTTTATTTTTTCTAAGTAGGTATTGGTCGTCATTTCTTTAGGTAAAATTACTCTAATAGTCGGTAGATAATAGTAAATTAAATTTAAAAAATTTATATATAAAATACCCATTCACTAAAGTAATTATAAAATACGCTGTAAATCCGCTCTTGTAAATGCAATGCAAGTGCGCGCATCTAATAATAAATAAGAGAACAAATTCATATGGTTTGTGCTTTCTGTTCTGACAAAGAAAAAGAACGAATTTTCCCTCTATTCTATACTTTTTAAGAAATAATTCTATGCTTTCACGTGAGTTTATTCAAGTTGGATTAGAAAGAATAAATAACAGTAACGACTTATTTTGACAGGCGATTCCAAGGGAAGCAAGTCAATATACAATTGGAGAATCTAAATATTATATGGTACTTGTATTGTGCGCTATTATTTGGCAATTCGCGCTCATGGGTTTGGTTGGAGTTATTTTTTATTCTTCATCTTTACTCTCTGGAATTATAGGCGCTTTTTTAC</genome_strand>
        <mrna_strand>ACCAAAAATCGAAAATGAAGAAGCTTATCTTCCTAATTTTCAACATAATTATGCTTTCCATCGGCAATTGCGGTGGCCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGTAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGAATCATCGTCGGACTCGACGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGGGCGAACGGTGACCGTCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTACTGTATTGGAGATTCAGATGGTTCTGGGAATTTCTGCTACTGTTTTTTGCACTATTGGAATGATTATCAACAAGGATTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATTCCAAGGGAAGCAAGTCAATATACAATTGGAGAATCTAAATATTATATGGTACTCGTATTGTGCGCTATAATTTGGCAATTCGCGCTCATGGGTTTGGTTGGAGTTATTTTTTATTCTTCGTCTTTACTCTCTGGAATTATAGGCGCTTTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257050" ref_strand="+" ref_description="SGN-E257050 [cLEG-44-O2]">
      <seq>ttggatacccagcgtattacaaactgttggttgtccagttattctcatccctttagccattgcctattttcaacgccggaaaattcaaggacccgaggctaaaatcgtctttatcacacggcaagagttcatcgcatctgccggagtcggaatcatcgtcggactcgatggttacttaaactcatggggacccgcaaaattacccgtttcaacttcgactctaatcaacgcgactcagcttgcgttcactgcgctttttgctgtgcttatagtcaaacagaaattgactgcgtattcgacgaattcagtcgttttgcttatcgccggagctgcgactttagccctccgggcgaacggtgaccggccggccggcgagtcggcgaaggattatatgttggggtttgtgatgacgtttgttggtgcggtgttatatggattgatgttgccgttaattgagttgatctatatgaagtcgaagcaagctgttacttacattactgtattggagattcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="105376" stop="106491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105676" g_stop="106191" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E257050" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105676" e_stop="106191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGTAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGTATCATCGTCGGACTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGAGCGAACGGTGACCGCCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTACTGTATTGGAGATTCAGAT</genome_strand>
        <mrna_strand>TTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGGAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGAATCATCGTCGGACTCGATGGTTACTTAAACTCATGGGGACCCGCAAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGGGCGAACGGTGACCGGCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTACTGTATTGGAGATTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619285" ref_strand="+" ref_description="SGN-E619285 [69973]">
      <seq>attattctcatccctctagccatagcctatttccaacgccggaaaattcaaggacccgaggctaaaatcgtctttatcacacggcaagagttcatcgcatctgccggcgtcggaatcatcgtcggtctcgatggttacttaaactcatggggacccgcgaaattacccgtttcaacttcgactctaatcaacgcgactcagcttgcgttcactgcgctttttgctgtgcttatagttaagcagaaattgactgcgtattcgacgaattccgtcgttttgcttatcgccggagctgcgactttagctctccgggcgaacggtgaccggccggccggtgagtccgcgaaggattatatgttggggtttgtgatgacgtttattggtgcggtgttatatggattgatgttgccgttaattgagttgatttatatgaaggcgaagcaaactgttacttacactacagtattggagattcagatggttttgggcatttctgctactgttttttgcaccattggaatgattatcaacaaggatttccaggcgattccaagggaagcaaatcaatatgcaattggagaatctaagtattatatggtactagtattgtgtgccattatttggcaattcgccctcatggggttagtcggagttatttttattcttcctctttactctctggaattataggcgctttttttacttcctgttaccgaagttttggctgtaattttgttccacgaaaaatttcaaagcgggaaaaaggagtacctaattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="105414" stop="108270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105713" g_stop="106255" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106256" i_stop="107734" i_length="1479">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107735" g_stop="107970" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="781" r_length="238" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E619285" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105713" e_stop="106255"/>
          <exon e_start="107735" e_stop="107970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGTAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGTATCATCGTCGGACTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGAGCGAACGGTGACCGCCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTACTGTATTGGAGATTCAGATGGTTCTGGGAATTTCTGCTACTGTCTTTTGTACTATTGGAATGATTATCAACAAGGATTTCCAGGTACATATTATACACTTCTTCACTCAATTTCTGCAGCAAATCCAATTTCAGATAAACATAATTTTGAAACTTACAACCATCTTTCAATTAATTAAAATTTTAATTCTATACTATTACATTTAAATTAACAATTTTAAATAAATTTTGAAATAAATATCTAACAATTCGATCAAATCCGCATTGGGGTCTATTATGTCTATCTACTGAGTGTGATCCATCCGCTAGAATAAGTACACCAATTATAATCTTCCACCTGTCTTGTCTTTTGAATATTTACACGGTGGGTCCTTCGTCAATTAATCGTTTTAAAAATGCAGGTTTCAAAAATATCAATTTATTTATTGTAACAGAAAAAGAATATTTGTTTCTATTTTTTTTAAAAAATGAAAATGTTTTAACTACAATAATCAATTTCTTTATTTCACACACCTACAAACTCGAGTATGATTACCACAAATTATAATTTTTATAGATAAATTTAAATTAATCAAAATTTAATACGAATATATAAAAAAAAAAAAAAAAAAGAAGTAACTGAGTAATTGTTTAGCCCATGTTCTGATTGGCCAGGCAGGCTCCCCATTTCTAGCTGTCATATGAGTTTTTTCGTCCGTACATTAAATAAGGATAGAGTTTCCTACATTTTCTTTTTTCAAAGCGGAGCATATGACAAGCAAATATAATCTTTTTCATATTAATATGATAAAAGTATAATTTTTAAAAATTATATAAATTAATTCCTAAAAAATAAAATTTGATAAGATAGTGCATAATAATAAACTTATTTACCTCTACTCTTGTACCTACTTATGTATTGTAGAAAACAAATGTTACACTTAAAAGGAAAAACTATTTTTGATAAAGCTAATATTTTTACCATTGTTGTTAACTCTTTTCTAATGTCTAAACTTGTTTCTTTCCTTTCATATCAATTATTTTCCTCCTACCTTCTCTTTTTTTTTTTTTTTTTACTTTGGGAAACTAATTAAAATGGAAGAAAATTAATTAGATTTGCAAACTCTAATTTCTAAAGCTAATCTTTTTGTTAAATGTAGTTTCATTTGCATTATTAACATCATATTTAGAATTTTTACACCATACGTGCACTACTAAAATTGAAGAAAGAAGATTTTATTTTTTCTAAGTAGGTATTGGTCGTCATTTCTTTAGGTAAAATTACTCTAATAGTCGGTAGATAATAGTAAATTAAATTTAAAAAATTTATATATAAAATACCCATTCACTAAAGTAATTATAAAATACGCTGTAAATCCGCTCTTGTAAATGCAATGCAAGTGCGCGCATCTAATAATAAATAAGAGAACAAATTCATATGGTTTGTGCTTTCTGTTCTGACAAAGAAAAAGAACGAATTTTCCCTCTATTCTATACTTTTTAAGAAATAATTCTATGCTTTCACGTGAGTTTATTCAAGTTGGATTAGAAAGAATAAATAACAGTAACGACTTATTTTGACAGGCGATTCCAAGGGAAGCAAGTCAATATACAATTGGAGAATCTAAATATTATATGGTACTTGTATTGTGCGCTATTATTTGGCAATTCGCGCTCATGGGTTTGGTTGGAGTTATTTTTTATTCTTCATCTTTACTCTCTGGAATTATAGGCGC-TTTTTTACTTCCTGTTACTGAAGTTTTGGCCGTAATTCTGTTTCACGAAAAATTTC-AAGC-GGAAAAAGGAGTTGCTATTTTTCT</genome_strand>
        <mrna_strand>ATTATTCTCATCCCTCTAGCCATAGCCTATTTCCAACGCCGGAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGCGTCGGAATCATCGTCGGTCTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTTAAGCAGAAATTGACTGCGTATTCGACGAATTCCGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCTCTCCGGGCGAACGGTGACCGGCCGGCCGGTGAGTCCGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTATTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATTTATATGAAGGCGAAGCAAACTGTTACTTACACTACAGTATTGGAGATTCAGATGGTTTTGGGCATTTCTGCTACTGTTTTTTGCACCATTGGAATGATTATCAACAAGGATTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATTCCAAGGGAAGCAAATCAATATGCAATTGGAGAATCTAAGTATTATATGGTACTAGTATTGTGTGCCATTATTTGGCAATTCGCCCTCATGGGGTTAGTCGGAGTTA-TTTTTATTCTTCCTCTTTACTCTCTGGAATTATAGGCGCTTTTTTTACTTCCTGTTACCGAAGTTTTGGCTGTAATTTTGTTCCACGAAAAATTTCAAAGCGGGAAAAAGGAGTACCTAATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222781" ref_strand="+" ref_description="SGN-E222781 [cLEL-16-F13](-)">
      <seq>tattgtgcgctattatttggcaattcgcgctcatgggtttggttggagccattttttattcttcatctttactctctggaattataggcgcttttttacttcctgttactgaagttttggccgtaattctgtttcgcgaaaaatttcaagcggaaaaaggagttgctatttttctagctctatggggatttgtttcatatttttatggtgaatatgacacaagggaagaaggagaagaaaatgaacatgaagaaaaatgagagtcaaatatctcaacaattaaatatgggccaaacaggcgcaggacatgttgtgtagtaaatttaacgtgattggccaaatattttattttattgaacttgtatgaaaattaattaatcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="107496" stop="158964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107796" g_stop="108193" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E222781" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107796" e_stop="108193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTGCGCTATTATTTGGCAATTCGCGCTCATGGGTTTGGTTGGAGTTATTTTTTATTCTTCATCTTTACTCTCTGGAATTATAGGCGCTTTTTTACTTCCTGTTACTGAAGTTTTGGCCGTAATTCTGTTTCACGAAAAATTTCAAGCGGAAAAAGGAGTTGCTATTTTTCTAGCTCTATGGGGATTTGTTTCATATTTTTATGGTGAATATGA-ACAAGGGAAGAAGGAGAAGAAAATGAAGATGAAGAAAAATGAGAGTCAAATATCTCAACAATTAGATATGGGCCAAACAGGCGCAGGACATGTTGTGTAGTAAATTTAACGTGATTGGCCAAATATTTTATTTTATTGTACTTGTATGAAAATTAATTAATCATTAGGTGCAAAAAAAAAA</genome_strand>
        <mrna_strand>TATTGTGCGCTATTATTTGGCAATTCGCGCTCATGGGTTTGGTTGGAGCCATTTTTTATTCTTCATCTTTACTCTCTGGAATTATAGGCGCTTTTTTACTTCCTGTTACTGAAGTTTTGGCCGTAATTCTGTTTCGCGAAAAATTTCAAGCGGAAAAAGGAGTTGCTATTTTTCTAGCTCTATGGGGATTTGTTTCATATTTTTATGGTGAATATGACACAAGGGAAGAAGGAGAAGAAAATGAACATGAAGAAAAATGAGAGTCAAATATCTCAACAATTAAATATGGGCCAAACAGGCGCAGGACATGTTGTGTAGTAAATTTAACGTGATTGGCCAAATATTTTATTTTATTGAACTTGTATGAAAATTAATTAATCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222183" ref_strand="+" ref_description="SGN-E222183 [cLEL-16-F13](-)">
      <seq>gtgcgctattatttggcaattcgcgctcatgggtttggttggagttattttttattcttcatcttgactctctggaattataggcgctttttcacttcctgttactgaagttttggccgtaattctgtttcacgaaaaatttcaagcggaaaaaggagttgctatttttctagctctatggggatttgtttcatatttttatggtgaatatgacacaagggaagaaggagaagaaaatgaacatgaagaaaaatgagagtccaatatctcatcaattagatatgggccaaacaggcgcaggacatgttgtgtagtaaattagacgtgattggccaaatattttattatattgaacttgtatgagaattaattaatcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="107500" stop="158964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107800" g_stop="108193" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E222183" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107800" e_stop="108193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCGCTATTATTTGGCAATTCGCGCTCATGGGTTTGGTTGGAGTTATTTTTTATTCTTCATCTTTACTCTCTGGAATTATAGGCGCTTTTTTACTTCCTGTTACTGAAGTTTTGGCCGTAATTCTGTTTCACGAAAAATTTCAAGCGGAAAAAGGAGTTGCTATTTTTCTAGCTCTATGGGGATTTGTTTCATATTTTTATGGTGAATATGA-ACAAGGGAAGAAGGAGAAGAAAATGAAGATGAAGAAAAATGAGAGTCAAATATCTCAACAATTAGATATGGGCCAAACAGGCGCAGGACATGTTGTGTAGTAAATTTAACGTGATTGGCCAAATATTTTATTTTATTGTACTTGTATGAAAATTAATTAATCATTAGGTGCAAAAAAAAAA</genome_strand>
        <mrna_strand>GTGCGCTATTATTTGGCAATTCGCGCTCATGGGTTTGGTTGGAGTTATTTTTTATTCTTCATCTTGACTCTCTGGAATTATAGGCGCTTTTTCACTTCCTGTTACTGAAGTTTTGGCCGTAATTCTGTTTCACGAAAAATTTCAAGCGGAAAAAGGAGTTGCTATTTTTCTAGCTCTATGGGGATTTGTTTCATATTTTTATGGTGAATATGACACAAGGGAAGAAGGAGAAGAAAATGAACATGAAGAAAAATGAGAGTCCAATATCTCATCAATTAGATATGGGCCAAACAGGCGCAGGACATGTTGTGTAGTAAATTAGACGTGATTGGCCAAATATTTTATTATATTGAACTTGTATGAGAATTAATTAATCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541035" ref_strand="+" ref_description="SGN-E541035 [TUS-61-J22]">
      <seq>cttgtaactcaagtgagggcattaatgtggtggaatgttgggctgatccagaaggctggactttgtgggctattctctggcctgccctatccaagcatagagttgggctatgtagcccaagcgaaggcataggctgcttggctcctagagtggggtggatcgcgtgaggctggtttcacagagcaacgaacagctcccgttctatccagtggaaggatcacgggtcagtgttcatgaaatgaagtccaactaaaacctaatgggctgcttcaactaaaccaccattttttgaccttaatgtatataatatttttatgggcaactttcacatataacaaacaaataattcacatttgtatgctatagtaaagcttgtataattgcgctccatagcaaacataaaaactgtataattcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="113272" stop="112248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112972" g_stop="112547" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E541035" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112972" e_stop="112547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTAACTCAAGTGAGGGCATTAATGTGGTGGAATTGTTGGGCTGATCCAGAAGGCTGGACTTTGTGGGCTATTCTCTGGCCTGCCCTATCCAAGCATAGAGTTGGGCTATGTAGCTAGCCCAAGCGAAGGCATAGGCTGCTTGGCTCCTAGAGTGGGGTGGATCGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTCCCGTTCTATCCAGTGGAAGGATCACGGGTTAGTGTTC-----ATGAAGTCCAACTAAAACCTAATGGGCTGCTTCAACTAAACCACCATTTTTTGACCTTAATGTATATAATATTTTTATGGGCAACTTTCACATATAACAAACAAATAATTCACATTTGTATGCTATAGTAAAGTTTGTATAATTGCGCTCCATAGCAAACAT-AAAACTGTATAATTCGCTATACATAT</genome_strand>
        <mrna_strand>CTTGTAACTCAAGTGAGGGCATTAATGTGGTGGAA-TGTTGGGCTGATCCAGAAGGCTGGACTTTGTGGGCTATTCTCTGGCCTGCCCTATCCAAGCATAGAGTTGGGCTATGTAGC----CCAAGCGAAGGCATAGGCTGCTTGGCTCCTAGAGTGGGGTGGATCGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTCCCGTTCTATCCAGTGGAAGGATCACGGGTCAGTGTTCATGAAATGAAGTCCAACTAAAACCTAATGGGCTGCTTCAACTAAACCACCATTTTTTGACCTTAATGTATATAATATTTTTATGGGCAACTTTCACATATAACAAACAAATAATTCACATTTGTATGCTATAGTAAAGCTTGTATAATTGCGCTCCATAGCAAACATAAAAACTGTATAATTCGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292560" ref_strand="+" ref_description="SGN-E292560 [cLET-16-I22]">
      <seq>gggcattaatgggggggaatggtgggctgatccaaaaagctggactttgggggctattctctggcctggcctatccaagcatagagttgggctatgtagcccaagcgaaagcataggctgcttggctcctagagtggggtggatcgcgtgaggctggtttcacagagcaacgaacagctcccgttctatccagtggaaggatcacgggtcagtgttcatgaaatgaagtccaactaaaacctaatgggctgcttcaactaaaccaccattttttgaccttaatgtatataatatttttatgggcaactttcacatataacaaacaaataattcacatttgtatgctatagtaaagcttgtataattgcgctccatagcaaacataaaaactgtataattcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="113256" stop="112248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112956" g_stop="112547" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E292560" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112956" e_stop="112547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCATTAATGTGGTGGAATTGTTGGGCTGATCCAGAAGGCTGGACTTTGTGGGCTATTCTCTGGCCTGCCCTATCCAAGCATAGAGTTGGGCTATGTAGCTAGCCCAAGCGAAGGCATAGGCTGCTTGGCTCCTAGAGTGGGGTGGATCGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTCCCGTTCTATCCAGTGGAAGGATCACGGGTTAGTGTTC-----ATGAAGTCCAACTAAAACCTAATGGGCTGCTTCAACTAAACCACCATTTTTTGACCTTAATGTATATAATATTTTTATGGGCAACTTTCACATATAACAAACAAATAATTCACATTTGTATGCTATAGTAAAGTTTGTATAATTGCGCTCCATAGCAAACAT-AAAACTGTATAATTCGCTATACATAT</genome_strand>
        <mrna_strand>GGGCATTAATGGGGGGGAA-TGGTGGGCTGATCCAAAAAGCTGGACTTTGGGGGCTATTCTCTGGCCTGGCCTATCCAAGCATAGAGTTGGGCTA--T-G-TAGCCCAAGCGAAAGCATAGGCTGCTTGGCTCCTAGAGTGGGGTGGATCGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTCCCGTTCTATCCAGTGGAAGGATCACGGGTCAGTGTTCATGAAATGAAGTCCAACTAAAACCTAATGGGCTGCTTCAACTAAACCACCATTTTTTGACCTTAATGTATATAATATTTTTATGGGCAACTTTCACATATAACAAACAAATAATTCACATTTGTATGCTATAGTAAAGCTTGTATAATTGCGCTCCATAGCAAACATAAAAACTGTATAATTCGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541033" ref_strand="+" ref_description="SGN-E541033 [TUS-61-J22](-)">
      <seq>cttgtaactcaagtgagggcattaatgtggtggaatgttgggctgatccagaaggctggactttgtgggctattctctggcctgccctatccaagcatagagttgggctatgtagcccaagcgaaggcataggctgcttggctcctagagtggggtggatcgcgtgaggctggtttcacagagcaacgaacagctcccgttctatccagtggaaggatcacgggtcagtgttcatgaaatgaagtccaactaaaacctaatgggctgcttcaactaaaccaccattttttgaccttaatgtatataatatttttatgggcaactttcacatataacaaacaaataattcacatttgtatgctatagtaaagcttgtataattgcgctccatagcaaacataaaaactgtataattcgaaaaaaaaaaaaaaaaaactcgaggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="113272" stop="112243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112972" g_stop="112558" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="436"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E541033" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112972" e_stop="112558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTAACTCAAGTGAGGGCATTAATGTGGTGGAATTGTTGGGCTGATCCAGAAGGCTGGACTTTGTGGGCTATTCTCTGGCCTGCCCTATCCAAGCATAGAGTTGGGCTATGTAGCTAGCCCAAGCGAAGGCATAGGCTGCTTGGCTCCTAGAGTGGGGTGGATCGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTCCCGTTCTATCCAGTGGAAGGATCACGGGTTAGTGTTC-----ATGAAGTCCAACTAAAACCTAATGGGCTGCTTCAACTAAACCACCATTTTTTGACCTTAATGTATATAATATTTTTATGGGCAACTTTCACATATAACAAACAAATAATTCACATTTGTATGCTATAGTAAAGTTTGTATAATTGCGCTCCATAGCAAACAT-AAAACTGTATAATTC</genome_strand>
        <mrna_strand>CTTGTAACTCAAGTGAGGGCATTAATGTGGTGGAA-TGTTGGGCTGATCCAGAAGGCTGGACTTTGTGGGCTATTCTCTGGCCTGCCCTATCCAAGCATAGAGTTGGGCTATGTAGC----CCAAGCGAAGGCATAGGCTGCTTGGCTCCTAGAGTGGGGTGGATCGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTCCCGTTCTATCCAGTGGAAGGATCACGGGTCAGTGTTCATGAAATGAAGTCCAACTAAAACCTAATGGGCTGCTTCAACTAAACCACCATTTTTTGACCTTAATGTATATAATATTTTTATGGGCAACTTTCACATATAACAAACAAATAATTCACATTTGTATGCTATAGTAAAGCTTGTATAATTGCGCTCCATAGCAAACATAAAAACTGTATAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434823" ref_strand="+" ref_description="SGN-E434823 [STM-60-D15]">
      <seq>caaataacaataacattttctattagaagaaatggcgtacaagatacaaatattaacaatcaaataatacagaagttgtagctttatgtatcggcattattgataaatgtatatatcaacaagaagctgctgctggaaccatgacacgcttctttttcttcttataaaggcaaaagagagcaatagcaaatgctatgaagaaaaaaccgccgattgatacacctaccgctataattgtagtgtgttttccgcctccccctgaaggtggggaaacatcaatactattacttgatggtggaggaggaaaggtacttgaaggaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="115961" stop="115037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115664" g_stop="115337" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E434823" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115664" e_stop="115337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACACAGATAACATCTT-TATTAGAAGAAAAGGGGTACAAGATACAAATATTAACAATCAAATAATACAAGAGTTTTTAGCTTTATGTATCGGCATTATTAATATATTTATATATCAACAAGAAGCTGCAGCTGGAACCATGACACGCTTCTTTTTCTTCTTATATAAGCAAAAGAGAGCAATAGCAAATGCTATGAAGAAAAGACCCCCGATTGATACACCTACAGCGATAATTGTAGTGTGTTTTCCGCCTCCCCCTGAAGGTGGGGCAACATCAATACTATTACTTGATGGTGGAGGAGGAAAGGTAGTTGAAGGAAAAGTTG</genome_strand>
        <mrna_strand>CAAATAACA-ATAACATTTTCTATTAGAAGAAATGGCGTACAAGATACAAATATTAACAATCAAATAATAC-AGAAGTTGTAGCTTTATGTATCGGCATTATTGATAAATGTATATATCAACAAGAAGCTGCTGCTGGAACCATGACACGCTTCTTTTTCTTCTTATAAAGGCAAAAGAGAGCAATAGCAAATGCTATGAAGAAAAAACCGCCGATTGATACACCTACCGCTATAATTGTAGTGTGTTTTCCGCCTCCCCCTGAAGGTGGGGAAACATCAATACTATTACTTGATGGTGGAGGAGGAAAGGTACTTGAAGGAAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717628" ref_strand="+" ref_description="SGN-E717628 [FC02BB04]">
      <seq>gggcgattggcggccaatcggccgaattggtcttctccagcacatccattgttgtcgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgagggacaaaacatggacctttacatccctaggaagtgctctgcgactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctctgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaaaacttttggagataacaaatatgtgctgttgttttaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120482" stop="106904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120179" g_stop="120135" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="73" r_length="44" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.96"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="167" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="300" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118297" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="582" r_length="282" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118296" i_stop="117624" i_length="673">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117623" g_stop="117573" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="633" r_length="51" r_score="0.588"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E717628" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120179" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118297"/>
          <exon e_start="117623" e_stop="117573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTCCAAGCACATCCGTTGTTGTCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTACTTTGCACTAAACTTGTGTTTGTTGGAACGGGTTTTATGCTTTTGTCTTGGTGTTTTGATTTTATGCCTTTCTTTCTTTTTTAGTAAGAAATGATGGTGGTTCTTGGGGCAGTTTTTGTGTACGTCAACTATTCCATCCCACCTGTGTAGATACCAAGTTATTACACAGAGTTGAAAGGCTATCTTATATGCTTTTAGTACCTATTGGTGTTGCAACAAATTATCTTCAGGCCGAGGAGTAGACGTCTTGCTCTCAACTTAATAAATTTCTCTTCTTAACTACTTTTGCACTCTATTTTTCTTCTTTTATCAACACAGCTATAGGACTTCATATGTGTATGTGTTCGTCCCTTGGGTAAAGAAAAGGATTCCTGTCTGTCTTGATCCTTTGTCCTTGAAGGAGTTATTAGTTAGATTTTAATGGAAGTCAAACACGAATTGGAGTGATTTTATGGTAAATAGAGACTTTTGTATGTGGGTGTTAATGGTGAATATGCTCGGAATTGAACTATGCAAAATGATTCAAATCTACTTTCGAACATGTAATAGTTGATGATCTGTATTTAATTGAAAACAACTGTGAATCTGGCATACTTTTAACCACATTGAAATTTCAGACTTAAATTCTATATATTTAATATAATAAATATCAAGAATTCTTATAAAAATGACAATCAAGCAAAAGAAA</genome_strand>
        <mrna_strand>GTCTTCTCC-AGCACATCCATTGTTGTCGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCGACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTCTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAA-A-AACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434983" ref_strand="+" ref_description="SGN-E434983 [STM-60-F10]">
      <seq>tgatgtcgtcgtcagtctgtcttcgaggtgttttccccttctaaatctatttgtgtaaagccattgtcaagatgcagaacgatgagggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgtccagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcagaagaaaaaggctgaagttggacaacaatgagagttttctatttgctgttaccattcttgaaaaatgagagttttctatttagtattgtattacatgcagttctttgttggtgttagtggctgttctgttttatgtttaaagttcatatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaagagaacttttggcaaatatgtgctgttgttttaatgaattggccttgttcgtgagccatttctttcggttgctatttacttggcactaaacttgtaggtaccaagttattactcagagatgaaacgttctcttatatgctttacctattggtgttgcagcaaattgcagatattttgctctcaactaaataaaattctcttctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="117739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="121" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="254" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118257" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="576" r_length="322" r_score="0.905"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118256" i_stop="118134" i_length="123">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118133" g_stop="118039" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="664" r_length="88" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="705" polyA_stop="714"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E434983" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118257"/>
          <exon e_start="118133" e_stop="118039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTC--TG-T-GT-TTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTAC-GTTGCTACTTTGCACTAAACTTGTGTTTGTTGGAACGGGTTTTATGCTTTTGTCTTGGTGTTTTGATTTTATGCCTTTCTTTCTTTTTTAGTAAGAAATGATGGTGGTTCTTGGGGCAGTTTTTGTGTACGTCAACTATTCCATCCCACCTGTGTAGATACCAAGTTATTACACAGAGTTGAAAGGCTATCTTATATGCTTTTAGTACCTATTGGTGTTGCAACAAATT</genome_strand>
        <mrna_strand>GTGTTTTCCCCTTCTAAATCTATTTGTGTAAAGCCATTGTCAAGATGCAGAACGATGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTCCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAGAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGCTGTTACCATTCTTGAAAAATGAGAGTTTTCTATTTAGTATTGTATTACATGCAGTTCTTTGTTGGTGTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCA-TATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAAGAGAACTTTT-G-G----CAAATATGTGCTGTTGTTTTAATGAATTGGCCTTGTTCGTGAGCCATTTCTTTCGGTTGCTA-TTT...........................................................................................................................ACT-TGGCA-CTAAACT-TGTAGGTACCAAGTTATTACTCAGAGATGAAACGTTCTCTTATATGC--TT--TACCTATTGGTGTTGCAGCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721001" ref_strand="+" ref_description="SGN-E721001 [FC12BH11]">
      <seq>agcacatccattgttgtcgtcagtcagtctcccaggagttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgagggacaaaacatggacctttacatccctaggaagtgctctgcgactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagatttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctctgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaaaacttttggagataaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120469" stop="106904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120169" g_stop="120135" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.00"/>
            <acceptor a_prob="0.870" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="129" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="262" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118310" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="531" r_length="269" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118309" i_stop="118177" i_length="133">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118176" g_stop="118165" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="543" r_length="12" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E721001" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120169" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118310"/>
          <exon e_start="118176" e_stop="118165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACATCCGTTGTTGTCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTACTTTGCACTAAACTTGTGTTTGTTGGAACGGGTTTTATGCTTTTGTCTTGGTGTTTTGATTTTATGCCTTTCTTTCTTTTTTAGTAAGAAATGATG</genome_strand>
        <mrna_strand>AGCACATCCATTGTTGTCGTCAGTCAGTCTCCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCGACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGATTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTCTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAA-A-AACTTTTGGAGATAAAAAAAAAAAAAA.....................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249717" ref_strand="+" ref_description="SGN-E249717 [cLEF-56-L18]">
      <seq>gcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119691" stop="106904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119392" g_stop="119295" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="231" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118315" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="498" r_length="267" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118314" i_stop="118177" i_length="138">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118176" g_stop="118165" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="510" r_length="12" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E249717" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119392" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118315"/>
          <exon e_start="118176" e_stop="118165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTACTTTGCACTAAACTTGTGTTTGTTGGAACGGGTTTTATGCTTTTGTCTTGGTGTTTTGATTTTATGCCTTTCTTTCTTTTTTAGTAAGAAATGATG</genome_strand>
        <mrna_strand>GCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGAAAAAAAAAAAAAAAAAAAAAAAA..........................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308493" ref_strand="+" ref_description="SGN-E308493 [cLEY-21-O4]">
      <seq>tcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataacttttggagataaccnanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="118016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="110" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="243" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118315" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="510" r_length="267" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118314" i_stop="118177" i_length="138">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118176" g_stop="118168" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="519" r_length="9" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E308493" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118315"/>
          <exon e_start="118176" e_stop="118168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTACTTTGCACTAAACTTGTGTTTGTTGGAACGGGTTTTATGCTTTTGTCTTGGTGTTTTGATTTTATGCCTTTCTTTCTTTTTTAGTAAGAAATG</genome_strand>
        <mrna_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACCNANAA..........................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734745" ref_strand="+" ref_description="SGN-E734745 [LB13BH10]">
      <seq>cgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgagggacaaaacatggacctttacatccctaggaagtgctctgcgactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctctgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaaaacttttggagataacaaatatgtgctgttgttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120452" stop="117996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120152" g_stop="120135" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="112" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="245" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118297" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="527" r_length="282" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118296" i_stop="118177" i_length="120">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118176" g_stop="118170" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="534" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E734745" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120152" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118297"/>
          <exon e_start="118176" e_stop="118170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTACTTTGCACTAAACTTGTGTTTGTTGGAACGGGTTTTATGCTTTTGTCTTGGTGTTTTGATTTTATGCCTTTCTTTCTTTTTTAGTAAGAAA</genome_strand>
        <mrna_strand>CGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCGACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTCTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAA-A-AACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAAAAA........................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305867" ref_strand="+" ref_description="SGN-E305867 [cLEX-14-P12]">
      <seq>ttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgatctgttttatgtttaaangtcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataacttttggagataacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="118016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119394" g_stop="119295" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="233" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118317" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="498" r_length="265" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118316" i_stop="118177" i_length="140">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118176" g_stop="118170" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="505" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E305867" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119394" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118317"/>
          <exon e_start="118176" e_stop="118170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTACTTTGCACTAAACTTGTGTTTGTTGGAACGGGTTTTATGCTTTTGTCTTGGTGTTTTGATTTTATGCCTTTCTTTCTTTTTTAGTAAGAAA</genome_strand>
        <mrna_strand>TTGCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGATCTGTTTTATGTTTAAANGTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAAA............................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340031" ref_strand="+" ref_description="SGN-E340031 [cTOF-3-K6]">
      <seq>aggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataacttttggagataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119690" stop="106909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119390" g_stop="119295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="229" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118315" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="496" r_length="267" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118314" i_stop="118177" i_length="138">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118176" g_stop="118170" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="503" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E340031" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119390" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118315"/>
          <exon e_start="118176" e_stop="118170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTACTTTGCACTAAACTTGTGTTTGTTGGAACGGGTTTTATGCTTTTGTCTTGGTGTTTTGATTTTATGCCTTTCTTTCTTTTTTAGTAAGAAA</genome_strand>
        <mrna_strand>AGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAAAAAAAAA..........................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712720" ref_strand="+" ref_description="SGN-E712720 [FB05CE10]">
      <seq>gtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgagggacaaaacatggacctttacatccctaggaagtgctctgcgactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctctgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaaaacttttggagataacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="118016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="107" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="240" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118315" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="504" r_length="264" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118314" i_stop="118177" i_length="138">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118176" g_stop="118170" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="511" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E712720" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118315"/>
          <exon e_start="118176" e_stop="118170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTACTTTGCACTAAACTTGTGTTTGTTGGAACGGGTTTTATGCTTTTGTCTTGGTGTTTTGATTTTATGCCTTTCTTTCTTTTTTAGTAAGAAA</genome_strand>
        <mrna_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCGACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTCTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAA-A-AACTTTTGGAGATAACAAAAAA..........................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564537" ref_strand="+" ref_description="SGN-E564537 [2786]">
      <seq>cttccaaggatcatgcatctgtccagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcagaagaaaaaggctgaagttggacaacaatgagagttttctatttgctgttaccattcttgaaaaatgagagttttctatttagtattgtattacatgcagttctttgttggtgttagtggctgttctgttttatgtttaaagttcatatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaagagaactttttgggcaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119487" stop="118016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119187" g_stop="119078" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118582" g_stop="118316" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="379" r_length="269" r_score="0.906"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118315" i_stop="118177" i_length="139">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118176" g_stop="118170" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="386" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E564537" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119187" e_stop="119078"/>
          <exon e_start="118582" e_stop="118316"/>
          <exon e_start="118176" e_stop="118170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTC--TG-T-GT-TTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTACTTTGCACTAAACTTGTGTTTGTTGGAACGGGTTTTATGCTTTTGTCTTGGTGTTTTGATTTTATGCCTTTCTTTCTTTTTTAGTAAGAAA</genome_strand>
        <mrna_strand>CTTCCAAGGATCATGCATCTGTCCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAGAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGCTGTTACCATTCTTGAAAAATGAGAGTTTTCTATTTAGTATTGTATTACATGCAGTTCTTTGTTGGTGTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCA-TATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAAGAGAACTTTTTGGGCAAAAAAAAA...........................................................................................................................................AAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713109" ref_strand="+" ref_description="SGN-E713109 [FB06DA04]">
      <seq>gttgttgtcgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataacttttggagataacaaatatgtgctgttgttttaatgaattggcctggttcatgagccatttcttacgttgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120460" stop="117961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120160" g_stop="120135" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="120" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="253" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118252" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="583" r_length="330" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E713109" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120160" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGTCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTACTTTGCACT</genome_strand>
        <mrna_strand>GTTGTTGTCGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714752" ref_strand="+" ref_description="SGN-E714752 [FB12BD04]">
      <seq>gttgtcgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgagggacaaaacatggacctttacatccctaggaagtgctctgcgactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctctgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaaaacttttggagataacnanaaaaaaaaaaaaaaaaaaaaaaacccccgggggggggccgggaccccattccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120457" stop="106904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120157" g_stop="120135" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="117" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="250" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118260" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="566" r_length="316" r_score="0.858"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E714752" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120157" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTAC</genome_strand>
        <mrna_strand>GTTGTCGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCGACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTCTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAA-A-AACTTTTGGAGATAAC-NANAAAAAAAAAAAAAAAAAAAAAAACCCCCGG-GGGGGGGCCGGGAC-CCCATTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372557" ref_strand="+" ref_description="SGN-E372557 [TUS-31-C21](-)">
      <seq>tctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataacttttggagataacaaatatgtgctgttgttttaatgaattggcctggttcatgagccatttcttacgttgctaaaaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119684" stop="117961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119384" g_stop="119295" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="223" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118261" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="544" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="560"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E372557" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119384" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTA</genome_strand>
        <mrna_strand>TCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289157" ref_strand="+" ref_description="SGN-E289157 [cLES-18-N5]">
      <seq>ctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataacttttggagataacaaatatgtgctgttgttttaatgaattggcctggttcatgagccatttcttacgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119683" stop="117963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119383" g_stop="119295" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="222" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118263" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="541" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E289157" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119383" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGC</genome_strand>
        <mrna_strand>CTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225299" ref_strand="+" ref_description="SGN-E225299 [cLEL-17-M14](-)">
      <seq>atcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataacttttggagataacaaatatgtgctgttgttttaatgaattggcctggttcatgagccatttcttacgttgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119478" stop="117961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119178" g_stop="119078" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118582" g_stop="118265" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="418" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="437"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E225299" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119178" e_stop="119078"/>
          <exon e_start="118582" e_stop="118265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTT</genome_strand>
        <mrna_strand>ATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372558" ref_strand="+" ref_description="SGN-E372558 [TUS-31-C21]">
      <seq>ctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtctaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataacttttggagataacaaatatgtgctgttgttttaatgaattggcctggttcatgagccatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119683" stop="117971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119383" g_stop="119295" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="222" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118271" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="533" r_length="311" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E372558" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119383" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCT</genome_strand>
        <mrna_strand>CTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTCTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737023" ref_strand="+" ref_description="SGN-E737023 [LC08AG09]">
      <seq>cgctgttcgtcttctccaagcacatccattgttgtcgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgagggacaaaacatggacctttacatccctaggaagtgctctgcgactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctctgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaaaacttttggagataacaaatatgtgctgttgttttaatgaattggcctggttttcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120487" stop="117985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120187" g_stop="120135" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.96"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="147" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="280" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118288" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="571" r_length="291" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="580" polyA_stop="594"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E737023" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120187" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTTCGTCTTCTCCAAGCACATCCGTTGTTGTCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTG</genome_strand>
        <mrna_strand>CGCTGTTCGTCTTCTCCAAGCACATCCATTGTTGTCGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCGACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTCTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAA-A-AACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734060" ref_strand="+" ref_description="SGN-E734060 [LB11CG01]">
      <seq>gtcgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgagggacaaaacatggacctttacatccctaggaagtgctctgcgactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctctgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaaaacttttggagataacaaatatgtgctgttgttttaatgaattggcctggttttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120454" stop="117985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120154" g_stop="120135" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="114" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="247" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118288" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="538" r_length="291" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="556"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E734060" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120154" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTG</genome_strand>
        <mrna_strand>GTCGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCGACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTCTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAA-A-AACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599925" ref_strand="+" ref_description="SGN-E599925 [52925]">
      <seq>ttggtgtcgtcgtcagtctgtcttcgaggtgttttccccttctaaatctatttgtgtaaagccattgtcaagatgcagaacgatgagggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgtccagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcagaagaaaaaggctgaagttggacaacaatgagagttttctatttgctgttaccattcttgaaaaatgagagttttctatttagtattgtattacatgcagttctttgttggtgttagtggctgttctgttttatgtttaaagttcatatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaagagaacttttggcaaatgtgctgttgttttaatgaattggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="117990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="122" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="255" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118290" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="542" r_length="287" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E599925" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTC--TG-T-GT-TTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCC</genome_strand>
        <mrna_strand>GTGTTTTCCCCTTCTAAATCTATTTGTGTAAAGCCATTGTCAAGATGCAGAACGATGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTCCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAGAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGCTGTTACCATTCTTGAAAAATGAGAGTTTTCTATTTAGTATTGTATTACATGCAGTTCTTTGTTGGTGTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCA-TATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAAGAGAACTTTT-G-G----C-AA-ATGTGCTGTTGTTTTAATGAATTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574948" ref_strand="+" ref_description="SGN-E574948 [34495]">
      <seq>cctcgntgccgcgtcagtctgtcttcgaggtgttttctccttctaaatctatttgtgtaaagccattgtcaagatgcagaacgatgagggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgtccagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgagcccagggagacgccgatagtgctcttgataggctctggcagaagaaaaaggctgaagttggacaacaatgagagttttctatttgctgttaccattcttgaaaaatgagagttttctatttagtattgtattacatgcagttctttgttggtgttagtggctgttctgttttatgtttaaagttcatatcagacaaatggaacttgcttgttactattttagtgcattaactttgattttctaccgttaaagagaacttttggcaaatgtgctgttgttcttaatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="118024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="123" r_length="94" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="256" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118294" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="541" r_length="285" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E574948" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTC--TG-T-GT-TTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTT-TTAATGAATT</genome_strand>
        <mrna_strand>GTGTTTTCTCCTTCTAAATCTATTTGTGTAAAGCCATTGTCAAGATGCAGAACGATGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTCCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGAGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAGAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGCTGTTACCATTCTTGAAAAATGAGAGTTTTCTATTTAGTATTGTATTACATGCAGTTCTTTGTTGGTGTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCA-TATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTAACTTTGATTTTCTACCGTT-AAAGAGAACTTTT-G-G----C-AA-ATGTGCTGTTGTTCTTAATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730969" ref_strand="+" ref_description="SGN-E730969 [LA25DA11]">
      <seq>cggttgtcgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgagggacaaaacatggacctttacatccctaggaagtgctctgcgactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctctgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaaaacttttggagataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120457" stop="118038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120159" g_stop="120135" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="119" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="252" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118312" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="519" r_length="267" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E730969" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120159" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGTCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTG</genome_strand>
        <mrna_strand>CGGTTGTCGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCGACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTCTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAA-A-AACTTTTGGAGATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728422" ref_strand="+" ref_description="SGN-E728422 [LA17DA11]">
      <seq>cttgtcgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgcaaagccactgtcaagatgcagaacgacgagggacaaaacatggacctttacatccctaggaagtgctctgcgactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctctgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaaaacttttggagatcaaaaaaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120456" stop="118038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120157" g_stop="120135" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.00"/>
            <acceptor a_prob="0.870" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="117" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="250" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118312" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="517" r_length="267" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E728422" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120157" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTG</genome_strand>
        <mrna_strand>CTTGTCGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGCAAAGCCACTGTCAAGATGCAGAACGACGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCGACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTCTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAA-A-AACTTTTGGAGATCAAAAAAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571613" ref_strand="+" ref_description="SGN-E571613 [15058]">
      <seq>gttggtgtcgtcgtcagtctgtcttcgaggtgttttccccttctaaatctatttgtgtaaagccattgtcaagatgcagaacgatgagggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgtccagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcagaagaaaaaggctgaagttggacaacaatgagagttttctatttgctgttaccattcttgaaaaatgagagttttctatttagtattgtattacatgcagttctttgttggtgttagtggctgttctgttttatgtttaaagttcatatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaagagaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="106910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="123" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="256" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118314" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="529" r_length="273" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E571613" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTC--TG-T-GT-TTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAA-AGATAACTTTTGGAGATAACAAATATG</genome_strand>
        <mrna_strand>GTGTTTTCCCCTTCTAAATCTATTTGTGTAAAGCCATTGTCAAGATGCAGAACGATGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTCCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAGAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGCTGTTACCATTCTTGAAAAATGAGAGTTTTCTATTTAGTATTGTATTACATGCAGTTCTTTGTTGGTGTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCA-TATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAGAGAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717055" ref_strand="+" ref_description="SGN-E717055 [FB18DC01]">
      <seq>gtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgagggacaaaacatggacctttacatccctaggaagtgctctgcgactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctctgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="106910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="111" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="244" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118314" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="512" r_length="268" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E717055" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATG</genome_strand>
        <mrna_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCGACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTCTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715127" ref_strand="+" ref_description="SGN-E715127 [FB13BF12]">
      <seq>cgttgtcgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataacttttggagataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120457" stop="118018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120158" g_stop="120135" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="118" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="251" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118319" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="514" r_length="263" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E715127" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120158" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAA</genome_strand>
        <mrna_strand>CGTTGTCGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604891" ref_strand="+" ref_description="SGN-E604891 [56908]">
      <seq>atccgttggtgtcgtcgtcagtctgtcttcgaggtgttttccccttctaaatctatttgtgtaaagccattgtcaagatgcagaacgatgagggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgtccagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcagaagaaaaaggctgaagttggacaacaatgagagttttctatttgctgttaccattcttgaaaaatgagagttttctatttagtattgtattacatgcagttctttgttggtgttagtggctgttctgtttatgtttaaagttcatatcagacaaatggaacttgcttgttactattttagtgcattaactttgatttttctaccgttaaaggagaaacttttggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="118026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="127" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="260" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118319" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="529" r_length="269" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E604891" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTC--TG-T-GT-TTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGA-TTTTCTACCGTTAAAAGA-TAACTTTTGGAGATAACAA</genome_strand>
        <mrna_strand>GTGTTTTCCCCTTCTAAATCTATTTGTGTAAAGCCATTGTCAAGATGCAGAACGATGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTCCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAGAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGCTGTTACCATTCTTGAAAAATGAGAGTTTTCTATTTAGTATTGTATTACATGCAGTTCTTTGTTGGTGTTAGTGGCTGTTCTG-TTTATGTTTAAAGTTCA-TATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTAACTTTGATTTTTCTACCGTTAAAGGAGAAACTTTTGGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601984" ref_strand="+" ref_description="SGN-E601984 [55036]">
      <seq>gtcgtcgtcagtctgtcttcgaggtgttttccccttctaaatctatttgtgtaaagccattgtcaagatgcagaacgatgagggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgtccagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcagaagaaaaaggctgaagttggacaacaatgagagttttctatttgctgttaccattcttgaaaaatgagagttttctatttagtattgtattacatgcagttctttgttggtgttagtggctgttctgttttatgtttaaagttcatatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaagagaacttttggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="118026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="117" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="250" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118325" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="510" r_length="260" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E601984" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTC--TG-T-GT-TTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGA</genome_strand>
        <mrna_strand>GTGTTTTCCCCTTCTAAATCTATTTGTGTAAAGCCATTGTCAAGATGCAGAACGATGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTCCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAGAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGCTGTTACCATTCTTGAAAAATGAGAGTTTTCTATTTAGTATTGTATTACATGCAGTTCTTTGTTGGTGTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCA-TATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAAGAGAACTTTTGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337874" ref_strand="+" ref_description="SGN-E337874 [cTOE-14-E24]">
      <seq>gtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataacttttggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="118025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="107" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="240" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118325" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="497" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E337874" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGA</genome_strand>
        <mrna_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335484" ref_strand="+" ref_description="SGN-E335484 [cTOE-2-K15]">
      <seq>agtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagatnaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="118035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="104" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="237" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118327" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="492" r_length="255" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E335484" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGA</genome_strand>
        <mrna_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATNAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338055" ref_strand="+" ref_description="SGN-E338055 [cTOE-14-J2]">
      <seq>tcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataacttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="118027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="110" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="243" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118327" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="498" r_length="255" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E338055" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGA</genome_strand>
        <mrna_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303806" ref_strand="+" ref_description="SGN-E303806 [cLEX-4-H23]">
      <seq>tcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119693" stop="118029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="106" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="239" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118329" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="492" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E303806" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTG</genome_strand>
        <mrna_strand>GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310666" ref_strand="+" ref_description="SGN-E310666 [cLEZ-19-J20]">
      <seq>ttgttgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaagataactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120456" stop="118032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120156" g_stop="120135" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="116" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="249" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118332" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="499" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E310666" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120156" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTT</genome_strand>
        <mrna_strand>TTGTTGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTTAAAAGATAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350032" ref_strand="+" ref_description="SGN-E350032 [cTOS-4-K16]">
      <seq>tcgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120453" stop="118045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120153" g_stop="120135" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="113" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="246" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118345" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="483" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E350032" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120153" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGT</genome_strand>
        <mrna_strand>TCGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351925" ref_strand="+" ref_description="SGN-E351925 [cTOS-8-B14]">
      <seq>tcgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120453" stop="118047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120153" g_stop="120135" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="113" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="246" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118347" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="481" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E351925" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120153" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACC</genome_strand>
        <mrna_strand>TCGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558738" ref_strand="+" ref_description="SGN-E558738 [18125]">
      <seq>cccttctaaatctatttgcgtaaagccattgtcaagatgcagaacgacgagggacaaaacatggacctttacatccctaggaagtgctctgctactaataggctgataacttccaaggatcatgcatctgtccagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgctgatagtgctcttgataggctctggcagaagaaaaaggctgaagttggacaacaatgagagttttccatttgatgttaccattcttgaaaaatgagagttttctatttagtatttgtattaccagcagttctttgttggtgtttgtggctgttctgttttatgtttaaagttcattatcagacaaatggaacatgcttggttactattttaagtgcattgacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119681" stop="118057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119380" g_stop="119295" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="219" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118582" g_stop="118357" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="452" r_length="233" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E558738" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119380" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTA-TTGTATTACCAGCAGTTC--TG-T-GT-TTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTT-GTTACTATTTT-AGTGCATTTAACTTG</genome_strand>
        <mrna_strand>CCCTTCTAAATCTATTTGCGTAAAGCCATTGTCAAGATGCAGAACGACGAGGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCTACTAATAGGCTGATAACTTCCAAGGATCATGCATCTGTCCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCTGATAGTGCTCTTGATAGGCTCTGGCAGAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCCATTTGATGTTACCATTCTTGAAAAATGAGAGTTTTCTATTTAGTATTTGTATTACCAGCAGTTCTTTGTTGGTGTTTGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACATGCTTGGTTACTATTTTAAGTGCA-TTGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352891" ref_strand="+" ref_description="SGN-E352891 [cTOS-11-J5]">
      <seq>gataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="119492" stop="118076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119192" g_stop="119078" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118582" g_stop="118377" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="321" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="322" polyA_stop="333"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E352891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119192" e_stop="119078"/>
          <exon e_start="118582" e_stop="118377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACT</genome_strand>
        <mrna_strand>GATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736760" ref_strand="+" ref_description="SGN-E736760 [LC07AD03]">
      <seq>ccatgaaagtgacagaatgtttgagttttgcagtcatcatttcaatgacattagagtaattctcttggtaaagagaagctcgtcgagtttgggaccttgctgataaggagaaatcaaaaggggatgaatactggatatggaaaaggatgacaactagaaacaaggtgaaaaaagagagagtgatgaatttgatggttaacattttggtcttatttcgagtgcatgacttggattgatgttccattttcattgagttaagaagcatcaaaatactatttctctggttttaaggagcaaattgaatgtcaagattgaaagttaaaatctctatatattatataaaaccagctgacataaaacatagatagtaatgaggcctgagggattccttgtcaatagtttcaatgtttacagatgtatgcttagtgaatattttagttgatagaagtgtgtaaggtcagagatggagccatgttttgcgttaaactttgttgtttttggtacttcttttctagttttgtcaaccttccattaaattcttcacagccaaaaaagatattttatacacttgggctgcatttaccttccctggcaccttgtcgagatctccttggagtatctcaaaatattacattcattaaaaaaagagagtataaaacacaataatacgacataatacaatataatatattatgaaataatatccctctaaacaaagtgttacagggcttttggtaaagtatataagcaaaattattgcatgtattagctctatgaattaatagtaccttatttgacatactttttcatgctatgtataaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="122191" stop="120767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121893" g_stop="121067" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E736760" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121893" e_stop="121067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAAGTGACAGAATGTTTGAGTTTTGCAGTCATCATTTCAATGACATTAGAGTAATTCTCTTGGTAAAGAGAAGCTCGTCGAGTTTGGGACCTTGCCGATAAGGAGAAATCAAAAGGGGATGAATACTGGATATGGAAAAGGATGACAACTAGAAACAAGGTGAAAAAAGAGATGGTGATGAATTTGGTGGTTAACATTTTGGTCTTATTTCGAGTGCATGACTTGGATTGATGTTCCATTTTCATCGAGTTAATAAGCATCAAAATACTATTTCTCTGGTTTTTAGGAGCAAATTGAATGTCAAGATTGAAAGTTAAAATCTTTATATATTATATAAAAACCAGCTGACATAAAACATAGGTAGTAATGAGGCCTGAGGGATTCCTTGTCAATAGTTTCCATGTTTACAGATGTATGCTTAGTGAATATTTTAGTTGATAGAAGTGTGTAAGGTCAGAGATGGAGCCATGTTTTGCGTTAAACTTTGTTGTTTTTGGTACTTTTTTCCTAGTTTTGTCAACCTTCCATTAAATTCTTCACAGCCAAAAAAGATATTTTATACACTTGGGCTGCATTTACCTTCCCTGGCACCTTGTCGAGATCTCCTTGGAGTATCTCAAAATATTACATTCATTTAAAAAAAAAAGTACAATACACAATAATACGACATAATACAATATAATATATTACGAAATAATATACCTCCAAACAAAGTGTTACAGGGCGTTTGGTAAATTATATAAGTAAAATTATTGCATACATTAACTCTATGTATTAGTAGTACCTTATTTGGCATACTTTTTCATGCTATATATAAATTAT</genome_strand>
        <mrna_strand>CCATGAAAGTGACAGAATGTTTGAGTTTTGCAGTCATCATTTCAATGACATTAGAGTAATTCTCTTGGTAAAGAGAAGCTCGTCGAGTTTGGGACCTTGCTGATAAGGAGAAATCAAAAGGGGATGAATACTGGATATGGAAAAGGATGACAACTAGAAACAAGGTGAAAAAAGAGAGAGTGATGAATTTGATGGTTAACATTTTGGTCTTATTTCGAGTGCATGACTTGGATTGATGTTCCATTTTCATTGAGTTAAGAAGCATCAAAATACTATTTCTCTGGTTTTAAGGAGCAAATTGAATGTCAAGATTGAAAGTTAAAATCTCTATATATTATAT-AAAACCAGCTGACATAAAACATAGATAGTAATGAGGCCTGAGGGATTCCTTGTCAATAGTTTCAATGTTTACAGATGTATGCTTAGTGAATATTTTAGTTGATAGAAGTGTGTAAGGTCAGAGATGGAGCCATGTTTTGCGTTAAACTTTGTTGTTTTTGGTACTTCTTTTCTAGTTTTGTCAACCTTCCATTAAATTCTTCACAGCCAAAAAAGATATTTTATACACTTGGGCTGCATTTACCTTCCCTGGCACCTTGTCGAGATCTCCTTGGAGTATCTCAAAATATTACATTCATTAAAAAAAGAGAGTATAAAACACAATAATACGACATAATACAATATAATATATTATGAAATAATATCCCTCTAAACAAAGTGTTACAGGGCTTTTGGTAAAGTATATAAGCAAAATTATTGCATGTATTAGCTCTATGAATTAATAGTACCTTATTTGACATACTTTTTCATGCTATGTATAAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576330" ref_strand="+" ref_description="SGN-E576330 [59530]">
      <seq>gcagaaggtcagacaccttcaggcttgttctgcccgcgtaatttggcctagatcatgcctcatgacaatggttttctcaaaacagtaagttctccccagtggaatagcacccatcttgtgggcttcaagcactcatttttcattgaccatcttacaagaggagtctattgcacatattccatgcctagcagattttcatggttgtagtatgtgtccgaaacaaatgttaggccttccaatagaatagcagattctggaagacatcctcgccatgccaaagcatatgaattctttgtgccatccctagtgttccttcctttaaagcaaagaaggcgtcctttggatgctttggaagggaaatacaagtgttctgtctcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="127363" stop="126295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127063" g_stop="126977" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126976" i_stop="126886" i_length="91">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126885" g_stop="126595" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="383" r_length="294" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E576330" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127063" e_stop="126977"/>
          <exon e_start="126885" e_stop="126595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGTCGGACACCTTCA-GCTTGTTCT-CCCGCGTAATTTGGCCTAGATCATGCCTCATGACAATGGCTTTTTCAAAACAGTAAGGTACATCTCCTCTATCAAATCCTTCCACCTTGACTTTACCAAAACTAGCTTGCATAAGTTGTTGAAGCCAAGATCCCATTTTTAATCTCAGTTCTCCCCAATGGAATAGCACCCATCTTGCGGGCTTCAAGCACTCATTTTTCATTGACCATCTTACAAGAGGAGTC-ATCGCACATATTCCATGCC-A-CAGATTTTCGTGGTTGTAGTATGTGTCCGATACAAATGTTAGGCCTTCCAATAGAATAGCGGATTCTGGAAGACTTCCTCGCCATGCCAAAGCATATGAATTCTTTGTTCCATCCCTAATATCCCTTCCTTTAAAGCAAAGAAGGCGTCCTTTGGATGCTTTGGAAGGGAAATACAAGTGTTCTGTCTCATTTTC</genome_strand>
        <mrna_strand>GCAGAAGGTCAGACACCTTCAGGCTTGTTCTGCCCGCGTAATTTGGCCTAGATCATGCCTCATGACAATGGTTTTCTCAAAACAGTAAG...........................................................................................TTCTCCCCAGTGGAATAGCACCCATCTTGTGGGCTTCAAGCACTCATTTTTCATTGACCATCTTACAAGAGGAGTCTATTGCACATATTCCATGCCTAGCAGATTTTCATGGTTGTAGTATGTGTCCGAAACAAATGTTAGGCCTTCCAATAGAATAGCAGATTCTGGAAGACATCCTCGCCATGCCAAAGCATATGAATTCTTTGTGCCATCCCTAGTGTTCCTTCCTTTAAAGCAAAGAAGGCGTCCTTTGGATGCTTTGGAAGGGAAATACAAGTGTTCTGTCTCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738862" ref_strand="+" ref_description="SGN-E738862 [LC15AH11]">
      <seq>cagaaaattcgagttctcgacgatctttggcagcaagtttcactccctgtacgatagtttcaagtttttcttagggtttcgaggtttcttcagtactctctttcaatggcttctagctctcatagaggcggtgatttctacggggctgcttcatatagatccagagatggattgagcacgaggcaagtaggtagtgcagatgaaatacagttgcggattgatccgatgcacggagatttagatgatgagatcacaggtcttcgcaagcaagtaaaacagctcagaaatgtagcacaagaaattgagtcggaagcaaagtatcagaatgattttattagccaactgcaaatgacattgatcaaagctcaggcaggagtaaagaacaacatgagacggttgaacaggagtatcatccaggaaggatcaaaccatgtgatgcatgtggttctttttgctctattttgcttctttataatatattggttggccaagttttcacggagataagtgcaactcactgtctatgttggtttgctgtttcctggtacaagttctgatgaagacacaatctattcaagccatcaaactgattctaagcagtggcagatttttagtgatttgggaagcaaggggggcaactgtaggaactccggatattagtcttatgtaaagcttcctaatctgtagaaaaccgtgggttgctactatttaacctttttcttttcattttattgttctttgtaatacttgctatatgacaatgaccagtgggtgcttaccttagaaaaatgtgattatggtgcaatggagtatgttatataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="131291" stop="127694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130991" g_stop="130837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.858"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130836" i_stop="130734" i_length="103">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130733" g_stop="130610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="288" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130609" i_stop="129156" i_length="1454">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129155" g_stop="129099" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="345" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129098" i_stop="128471" i_length="628">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128470" g_stop="127993" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="823" r_length="478" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E738862" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130991" e_stop="130837"/>
          <exon e_start="130733" e_stop="130610"/>
          <exon e_start="129155" e_stop="129099"/>
          <exon e_start="128470" e_stop="127993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAATTCGAGTTCTCGACGATCTTTGGCAGCAA-AGTCATTCCCTGTACGATAGTTTCAAGTTTTTCTTA-------G-GGTTTCTTCAGTACTCTCTTTCAATGGCTTCTAGCTCTCATAGAGGCAGTGATTTCTACGGGGCTGCTTCATATAGATCCAGGTATTTACGGAAATAAAGTTTTTTTTTAATCATTTTCTAAATTACACTTTCTTTTGGTTTATTTTTGAGGAAATTAAGTTGTTTAATGTGTTTGATTAATCAGAGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAATGTATGTTTCCCCAACACTTTGTCTTTGTTTCCGATTTTGGTTTTGTAGGAGAATAGCTATTGCATAACTGGTGGCGTTTGTACGATTAATTTACATTTGAAATTTGGTGATGTCTTATTCTGTTAGAATATAATATTCATTAGAAAACCAAAATGAAACTTGCTAGGCTTAGAGACACGTAAACACGCTTCTTTAATATAGTTGAAGTATCTCAGCGAGCAAATAGATAGCTGAAGTCTCTCTACGACCAAACAGAAATATTATGGTAGCTCTATCTTGGTGATTACAACTTTACGTGTTTCAAAAATGTTGATCTTCTATTCATGAATCTAGGATTTATATTTTTGATCAATGTCTCCCTTATATGAATTTTAGACATCAAGAATGGATCTGATACAAAATTCATTTTGGATATTAATAAACTACTTTAGAAATCCAAAAGACTTGAAACTATTTAATAAAATCCGTTGTTTCAAAATATATTGAGACATCATCTAACAATCTCCCGCTAGTTTCAATATATGAAAATAAGAGGCAGTTCTAGTAATATAAGTCAATGATGATGCCTTAACTTGATAATAAATTGCTATGTTTAGGCTTCAAGTGATTGTACAATGGTAAAGTGAGACAAGTCACATGAGAAGATTATTGGAGGATGGTTTAACATCTCTTCAATATGTGTGTTCTTGGTCTAACTTAGTAGATCCTTTTTACATTACCTATAATTATTTTGGTTAATTCTCTGTCTAAAAGATAGATGAAGAGTTGGTGGTTGAAACTTGTAAAAGAATGATAATAACGCGTATTGTAAATTAATTGTACTCAACGGATACTCTACCTAGTGAAATTATCTTAGGTTCAAACTTCATAGAGATAAATAATTGAAATTGCAGGTCTTGAGCCTAATAATAGTTTTTTTTATTTCCCGAAAATATATAATGGAAGTGCATATTTATATTTAATGCTACTTTAGCTTAGTTGAATCATGTAGTTAGTGTTTTAATGATCCAAATGTTGGCTGAAATTTCAAACAGGACTAAAGTTTTGTATTTCTAGTTGAACATTGCTTTGGGTGTAAATCCTGAAGATCTTTATATACCATATGCCCTTATTAGATGCATCTTTTCCAATCCCTCATTTGTTGGTCTTACTTGCTACTCCCTCTGTCCCAATTTATGGGATGACATTTGAAAGGGAGATTTTTGAAGCTTGTGGTCTAAATAAGGCATAGATATTTTTGTGACTATAAATCATCTTAGTAAGGATAAAATGGAAGTTTAAAGCTCATTGTTACTAATTATAGAAATGTGTCATTTTTTTAGGGATTGAATACGAAGGAAAGAGTGTCACATAAACTGGGGATGGGATAGAGGGAGTATATTATATTTGTCATGGTTTCAATTTGTATACCTATTTTCCCTTTTGCTTGTTCTTATAAATAATTTATATTGCAGGTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTGGTATGCCATGAACTCATTCTCCCTTTTTCCTTGTATGTATGACATCTTAGTCACTTCTCTATTTATTTCATGTATGCCTTAACAATTAAATTTTTGTATATTGGAGCTTTTTTGGTATTTATTCTCTTATTACTATTACTAGATAACAATTTAACATGAACCAAAATTATATTTAATTTTATAAATGAGGAAAAAGTTTTTAATTGGTTACCTTTATTTACAACCTTTATGCCCCCGCTTTCTCACTCTTTCTCCTTCTATAATCTAGGAATTACATTTGTTATTCCTATAACTCTCTTAGAACTGATAGTGTACTTGTAACCTTCCTTTCCCTTTCCTTACCATGCCAGCCTGCCTTAATGCCTTCGTTGTTTTATGCTCTCTCAATTTCTTTGAAAATATGTCCTTGTTAGATATTCCATCAACTGACTATGATAATTGATAAGCCCACTTTTTTTCTCCTTCTTTATTGAGGGTAATGTGTGCGGGTTATAAACATGTTGATTGGTCATTCTGTCTGGGATTCTCATCCTGTATGCTTAATTTATTGATTATGGAATCATTCTTACTTGTACGTTACATGGCTTCCCCATTTCCTTAAAAACTCACACTTATCCCTTTATCACAGCAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGGTCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTTTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACAGATTCTAAGCAGTGGCAGAGTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTAACCTTTTTCTTTTCATTTTATTGTTCTTTGTAATACTTGCTATATGACAATGACCAGTGGGTGCTTACCTTAGAAAAATGTGATTATGGTGCAATGGAGTATGTTATATAAT</genome_strand>
        <mrna_strand>CAGAAAATTCGAGTTCTCGACGATCTTTGGCAGCAAGTTTCACTCCCTGTACGATAGTTTCAAGTTTTTCTTAGGGTTTCGAGGTTTCTTCAGTACTCTCTTTCAATGGCTTCTAGCTCTCATAGAGGCGGTGATTTCTACGGGGCTGCTTCATATAGATCCAG.......................................................................................................AGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGATCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTGTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACTGATTCTAAGCAGTGGCAGATTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTAACCTTTTTCTTTTCATTTTATTGTTCTTTGTAATACTTGCTATATGACAATGACCAGTGGGTGCTTACCTTAGAAAAATGTGATTATGGTGCAATGGAGTATGTTATATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740953" ref_strand="+" ref_description="SGN-E740953 [LC23CE04]">
      <seq>cataaaattcgagttctcgacgatctttggcagcaagtttcactccctgtacgatagtttcaagtttttcttagggtttcgaggtttcttcagtactctctttcaatggcttctagctctcatagaggcggtgatttctacggggctgcttcatatagatccagagatggattgagcacgaggcaagtaggtagtgcagatgaaatacagttgcggattgatccgatgcacggagatttagatgatgagatcacaggtcttcgcaagcaagtaaaacagctcagaaatgtagcacaagaaattgagtcggaagcaaagtatcagaatgattttattagccaactgcaaatgacattgatcaaagctcaggcaggagtaaagaacaacatgagacggttgaacaggagtatcatccaggaaggatcaaaccatgtgatgcatgtggttctttttgctctattttgcttctttataatatattggttggccaagttttcacggagataagtgcaactcactgtctatgttggtttgctgtttcctggtacaagttctgatgaagacacaatctattcaagccatcaaactgattctaagcagtggcagatttttagtgatttgggaagcaaggggggcaactgtaggaactccggatattagtcttatgtaaagcttcctaatctgtagaaaaccgtgggttgctactatttaacctttttcttttcattttattgttctttgtaatacttgctatatgacaatgaccagtgggtgcttaccttagaaaaatgtgattatggtgcaatggagtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="131291" stop="127701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130991" g_stop="130837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130836" i_stop="130734" i_length="103">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130733" g_stop="130610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="288" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130609" i_stop="129156" i_length="1454">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129155" g_stop="129099" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="345" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129098" i_stop="128471" i_length="628">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128470" g_stop="128001" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="815" r_length="470" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E740953" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130991" e_stop="130837"/>
          <exon e_start="130733" e_stop="130610"/>
          <exon e_start="129155" e_stop="129099"/>
          <exon e_start="128470" e_stop="128001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAATTCGAGTTCTCGACGATCTTTGGCAGCAA-AGTCATTCCCTGTACGATAGTTTCAAGTTTTTCTTA-------G-GGTTTCTTCAGTACTCTCTTTCAATGGCTTCTAGCTCTCATAGAGGCAGTGATTTCTACGGGGCTGCTTCATATAGATCCAGGTATTTACGGAAATAAAGTTTTTTTTTAATCATTTTCTAAATTACACTTTCTTTTGGTTTATTTTTGAGGAAATTAAGTTGTTTAATGTGTTTGATTAATCAGAGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAATGTATGTTTCCCCAACACTTTGTCTTTGTTTCCGATTTTGGTTTTGTAGGAGAATAGCTATTGCATAACTGGTGGCGTTTGTACGATTAATTTACATTTGAAATTTGGTGATGTCTTATTCTGTTAGAATATAATATTCATTAGAAAACCAAAATGAAACTTGCTAGGCTTAGAGACACGTAAACACGCTTCTTTAATATAGTTGAAGTATCTCAGCGAGCAAATAGATAGCTGAAGTCTCTCTACGACCAAACAGAAATATTATGGTAGCTCTATCTTGGTGATTACAACTTTACGTGTTTCAAAAATGTTGATCTTCTATTCATGAATCTAGGATTTATATTTTTGATCAATGTCTCCCTTATATGAATTTTAGACATCAAGAATGGATCTGATACAAAATTCATTTTGGATATTAATAAACTACTTTAGAAATCCAAAAGACTTGAAACTATTTAATAAAATCCGTTGTTTCAAAATATATTGAGACATCATCTAACAATCTCCCGCTAGTTTCAATATATGAAAATAAGAGGCAGTTCTAGTAATATAAGTCAATGATGATGCCTTAACTTGATAATAAATTGCTATGTTTAGGCTTCAAGTGATTGTACAATGGTAAAGTGAGACAAGTCACATGAGAAGATTATTGGAGGATGGTTTAACATCTCTTCAATATGTGTGTTCTTGGTCTAACTTAGTAGATCCTTTTTACATTACCTATAATTATTTTGGTTAATTCTCTGTCTAAAAGATAGATGAAGAGTTGGTGGTTGAAACTTGTAAAAGAATGATAATAACGCGTATTGTAAATTAATTGTACTCAACGGATACTCTACCTAGTGAAATTATCTTAGGTTCAAACTTCATAGAGATAAATAATTGAAATTGCAGGTCTTGAGCCTAATAATAGTTTTTTTTATTTCCCGAAAATATATAATGGAAGTGCATATTTATATTTAATGCTACTTTAGCTTAGTTGAATCATGTAGTTAGTGTTTTAATGATCCAAATGTTGGCTGAAATTTCAAACAGGACTAAAGTTTTGTATTTCTAGTTGAACATTGCTTTGGGTGTAAATCCTGAAGATCTTTATATACCATATGCCCTTATTAGATGCATCTTTTCCAATCCCTCATTTGTTGGTCTTACTTGCTACTCCCTCTGTCCCAATTTATGGGATGACATTTGAAAGGGAGATTTTTGAAGCTTGTGGTCTAAATAAGGCATAGATATTTTTGTGACTATAAATCATCTTAGTAAGGATAAAATGGAAGTTTAAAGCTCATTGTTACTAATTATAGAAATGTGTCATTTTTTTAGGGATTGAATACGAAGGAAAGAGTGTCACATAAACTGGGGATGGGATAGAGGGAGTATATTATATTTGTCATGGTTTCAATTTGTATACCTATTTTCCCTTTTGCTTGTTCTTATAAATAATTTATATTGCAGGTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTGGTATGCCATGAACTCATTCTCCCTTTTTCCTTGTATGTATGACATCTTAGTCACTTCTCTATTTATTTCATGTATGCCTTAACAATTAAATTTTTGTATATTGGAGCTTTTTTGGTATTTATTCTCTTATTACTATTACTAGATAACAATTTAACATGAACCAAAATTATATTTAATTTTATAAATGAGGAAAAAGTTTTTAATTGGTTACCTTTATTTACAACCTTTATGCCCCCGCTTTCTCACTCTTTCTCCTTCTATAATCTAGGAATTACATTTGTTATTCCTATAACTCTCTTAGAACTGATAGTGTACTTGTAACCTTCCTTTCCCTTTCCTTACCATGCCAGCCTGCCTTAATGCCTTCGTTGTTTTATGCTCTCTCAATTTCTTTGAAAATATGTCCTTGTTAGATATTCCATCAACTGACTATGATAATTGATAAGCCCACTTTTTTTCTCCTTCTTTATTGAGGGTAATGTGTGCGGGTTATAAACATGTTGATTGGTCATTCTGTCTGGGATTCTCATCCTGTATGCTTAATTTATTGATTATGGAATCATTCTTACTTGTACGTTACATGGCTTCCCCATTTCCTTAAAAACTCACACTTATCCCTTTATCACAGCAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGGTCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTTTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACAGATTCTAAGCAGTGGCAGAGTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTAACCTTTTTCTTTTCATTTTATTGTTCTTTGTAATACTTGCTATATGACAATGACCAGTGGGTGCTTACCTTAGAAAAATGTGATTATGGTGCAATGGAGTATGT</genome_strand>
        <mrna_strand>CATAAAATTCGAGTTCTCGACGATCTTTGGCAGCAAGTTTCACTCCCTGTACGATAGTTTCAAGTTTTTCTTAGGGTTTCGAGGTTTCTTCAGTACTCTCTTTCAATGGCTTCTAGCTCTCATAGAGGCGGTGATTTCTACGGGGCTGCTTCATATAGATCCAG.......................................................................................................AGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGATCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTGTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACTGATTCTAAGCAGTGGCAGATTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTAACCTTTTTCTTTTCATTTTATTGTTCTTTGTAATACTTGCTATATGACAATGACCAGTGGGTGCTTACCTTAGAAAAATGTGATTATGGTGCAATGGAGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740630" ref_strand="+" ref_description="SGN-E740630 [LC22BB05]">
      <seq>cataaaattcgagttctcgacgatctttggcagcaagtttcactccctgtacgatagtttcaagtttttcttagggtttcgaggtttcttcagtactctctttcaatggcttctagctctcatagaggcggtgatttctacggggctgcttcatatagatccagagatggattgagcacgaggcaagtaggtagtgcagatgaaatacagttgcggattgatccgatgcacggagatttagatgatgagatcacaggtcttcgcaagcaagtaaaacagctcagaaatgtagcacaagaaattgagtcggaagcaaagtatcagaatgattttattagccaactgcaaatgacattgatcaaagctcaggcaggagtaaagaacaacatgagacggttgaacaggagtatcatccaggaaggatcaaaccatgtgatgcatgtggttctttttgctctattttgcttctttataatatattggttggccaagttttcacggagataagtgcaactcactgtctatgttggtttgctgtttcctggtacaagttctgatgaagacacaatctattcaagccatcaaactgattctaagcagtggcagatttttagtgatttgggaagcaaggggggcaactgtaggaactccggatattagtcttatgtaaagcttcctaatctgtagaaaaccgtgggttgctactatttaacctttttcttttcattttattgttctttgtaatacttgctatatgacaatgaccagtgggtgcttaccttagaaaaatgtgattatggtgcaatggagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="131291" stop="127702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130991" g_stop="130837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130836" i_stop="130734" i_length="103">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130733" g_stop="130610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="288" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130609" i_stop="129156" i_length="1454">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129155" g_stop="129099" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="345" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129098" i_stop="128471" i_length="628">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128470" g_stop="128002" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="814" r_length="469" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E740630" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130991" e_stop="130837"/>
          <exon e_start="130733" e_stop="130610"/>
          <exon e_start="129155" e_stop="129099"/>
          <exon e_start="128470" e_stop="128002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAATTCGAGTTCTCGACGATCTTTGGCAGCAA-AGTCATTCCCTGTACGATAGTTTCAAGTTTTTCTTA-------G-GGTTTCTTCAGTACTCTCTTTCAATGGCTTCTAGCTCTCATAGAGGCAGTGATTTCTACGGGGCTGCTTCATATAGATCCAGGTATTTACGGAAATAAAGTTTTTTTTTAATCATTTTCTAAATTACACTTTCTTTTGGTTTATTTTTGAGGAAATTAAGTTGTTTAATGTGTTTGATTAATCAGAGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAATGTATGTTTCCCCAACACTTTGTCTTTGTTTCCGATTTTGGTTTTGTAGGAGAATAGCTATTGCATAACTGGTGGCGTTTGTACGATTAATTTACATTTGAAATTTGGTGATGTCTTATTCTGTTAGAATATAATATTCATTAGAAAACCAAAATGAAACTTGCTAGGCTTAGAGACACGTAAACACGCTTCTTTAATATAGTTGAAGTATCTCAGCGAGCAAATAGATAGCTGAAGTCTCTCTACGACCAAACAGAAATATTATGGTAGCTCTATCTTGGTGATTACAACTTTACGTGTTTCAAAAATGTTGATCTTCTATTCATGAATCTAGGATTTATATTTTTGATCAATGTCTCCCTTATATGAATTTTAGACATCAAGAATGGATCTGATACAAAATTCATTTTGGATATTAATAAACTACTTTAGAAATCCAAAAGACTTGAAACTATTTAATAAAATCCGTTGTTTCAAAATATATTGAGACATCATCTAACAATCTCCCGCTAGTTTCAATATATGAAAATAAGAGGCAGTTCTAGTAATATAAGTCAATGATGATGCCTTAACTTGATAATAAATTGCTATGTTTAGGCTTCAAGTGATTGTACAATGGTAAAGTGAGACAAGTCACATGAGAAGATTATTGGAGGATGGTTTAACATCTCTTCAATATGTGTGTTCTTGGTCTAACTTAGTAGATCCTTTTTACATTACCTATAATTATTTTGGTTAATTCTCTGTCTAAAAGATAGATGAAGAGTTGGTGGTTGAAACTTGTAAAAGAATGATAATAACGCGTATTGTAAATTAATTGTACTCAACGGATACTCTACCTAGTGAAATTATCTTAGGTTCAAACTTCATAGAGATAAATAATTGAAATTGCAGGTCTTGAGCCTAATAATAGTTTTTTTTATTTCCCGAAAATATATAATGGAAGTGCATATTTATATTTAATGCTACTTTAGCTTAGTTGAATCATGTAGTTAGTGTTTTAATGATCCAAATGTTGGCTGAAATTTCAAACAGGACTAAAGTTTTGTATTTCTAGTTGAACATTGCTTTGGGTGTAAATCCTGAAGATCTTTATATACCATATGCCCTTATTAGATGCATCTTTTCCAATCCCTCATTTGTTGGTCTTACTTGCTACTCCCTCTGTCCCAATTTATGGGATGACATTTGAAAGGGAGATTTTTGAAGCTTGTGGTCTAAATAAGGCATAGATATTTTTGTGACTATAAATCATCTTAGTAAGGATAAAATGGAAGTTTAAAGCTCATTGTTACTAATTATAGAAATGTGTCATTTTTTTAGGGATTGAATACGAAGGAAAGAGTGTCACATAAACTGGGGATGGGATAGAGGGAGTATATTATATTTGTCATGGTTTCAATTTGTATACCTATTTTCCCTTTTGCTTGTTCTTATAAATAATTTATATTGCAGGTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTGGTATGCCATGAACTCATTCTCCCTTTTTCCTTGTATGTATGACATCTTAGTCACTTCTCTATTTATTTCATGTATGCCTTAACAATTAAATTTTTGTATATTGGAGCTTTTTTGGTATTTATTCTCTTATTACTATTACTAGATAACAATTTAACATGAACCAAAATTATATTTAATTTTATAAATGAGGAAAAAGTTTTTAATTGGTTACCTTTATTTACAACCTTTATGCCCCCGCTTTCTCACTCTTTCTCCTTCTATAATCTAGGAATTACATTTGTTATTCCTATAACTCTCTTAGAACTGATAGTGTACTTGTAACCTTCCTTTCCCTTTCCTTACCATGCCAGCCTGCCTTAATGCCTTCGTTGTTTTATGCTCTCTCAATTTCTTTGAAAATATGTCCTTGTTAGATATTCCATCAACTGACTATGATAATTGATAAGCCCACTTTTTTTCTCCTTCTTTATTGAGGGTAATGTGTGCGGGTTATAAACATGTTGATTGGTCATTCTGTCTGGGATTCTCATCCTGTATGCTTAATTTATTGATTATGGAATCATTCTTACTTGTACGTTACATGGCTTCCCCATTTCCTTAAAAACTCACACTTATCCCTTTATCACAGCAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGGTCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTTTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACAGATTCTAAGCAGTGGCAGAGTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTAACCTTTTTCTTTTCATTTTATTGTTCTTTGTAATACTTGCTATATGACAATGACCAGTGGGTGCTTACCTTAGAAAAATGTGATTATGGTGCAATGGAGTATG</genome_strand>
        <mrna_strand>CATAAAATTCGAGTTCTCGACGATCTTTGGCAGCAAGTTTCACTCCCTGTACGATAGTTTCAAGTTTTTCTTAGGGTTTCGAGGTTTCTTCAGTACTCTCTTTCAATGGCTTCTAGCTCTCATAGAGGCGGTGATTTCTACGGGGCTGCTTCATATAGATCCAG.......................................................................................................AGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGATCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTGTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACTGATTCTAAGCAGTGGCAGATTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTAACCTTTTTCTTTTCATTTTATTGTTCTTTGTAATACTTGCTATATGACAATGACCAGTGGGTGCTTACCTTAGAAAAATGTGATTATGGTGCAATGGAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321766" ref_strand="+" ref_description="SGN-E321766 [cTOB-25-O8]">
      <seq>tttcaatggcttctagctctcatagaggcagtgatttctacggggctgcttcatatagatccagagatggattgagcacgaggcaagtaggtagtgcagatgaaatacagttgcggattgatccgatgcacggagatttagatgatgagatcacaggtcttcgcaagcaagtaaaacagctcagaaatgtagcacaagaaattgagtcggaagcaaagtatcagaatgattttattagccaactgcaaatgacattgatcaaagctcaggcaggagtaaagaacaacatgagacggttgaacaggagtatcatccaggaagggtcaaaccatgtgatgcatgtggttctttttgctctattttgcttctttataatatattggttggccaagttttcacggagttaagtgcaactcactttctatgttggtttgctgtttcctggtacaagttctgatgaagacacaatctattcaagccatcaaacagattctaagcagtggcagagttttagtgatttgggaagcaaggggggcaactgtaggaactccggatattagtcttatgtaaagcttcctaatctgtagaaaaccgtgggttgctactattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="131200" stop="127805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130900" g_stop="130837" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130836" i_stop="130734" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130733" g_stop="130610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="188" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130609" i_stop="129156" i_length="1454">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129155" g_stop="129099" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="245" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129098" i_stop="128471" i_length="628">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128470" g_stop="128105" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="611" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E321766" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130900" e_stop="130837"/>
          <exon e_start="130733" e_stop="130610"/>
          <exon e_start="129155" e_stop="129099"/>
          <exon e_start="128470" e_stop="128105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGCTTCTAGCTCTCATAGAGGCAGTGATTTCTACGGGGCTGCTTCATATAGATCCAGGTATTTACGGAAATAAAGTTTTTTTTTAATCATTTTCTAAATTACACTTTCTTTTGGTTTATTTTTGAGGAAATTAAGTTGTTTAATGTGTTTGATTAATCAGAGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAATGTATGTTTCCCCAACACTTTGTCTTTGTTTCCGATTTTGGTTTTGTAGGAGAATAGCTATTGCATAACTGGTGGCGTTTGTACGATTAATTTACATTTGAAATTTGGTGATGTCTTATTCTGTTAGAATATAATATTCATTAGAAAACCAAAATGAAACTTGCTAGGCTTAGAGACACGTAAACACGCTTCTTTAATATAGTTGAAGTATCTCAGCGAGCAAATAGATAGCTGAAGTCTCTCTACGACCAAACAGAAATATTATGGTAGCTCTATCTTGGTGATTACAACTTTACGTGTTTCAAAAATGTTGATCTTCTATTCATGAATCTAGGATTTATATTTTTGATCAATGTCTCCCTTATATGAATTTTAGACATCAAGAATGGATCTGATACAAAATTCATTTTGGATATTAATAAACTACTTTAGAAATCCAAAAGACTTGAAACTATTTAATAAAATCCGTTGTTTCAAAATATATTGAGACATCATCTAACAATCTCCCGCTAGTTTCAATATATGAAAATAAGAGGCAGTTCTAGTAATATAAGTCAATGATGATGCCTTAACTTGATAATAAATTGCTATGTTTAGGCTTCAAGTGATTGTACAATGGTAAAGTGAGACAAGTCACATGAGAAGATTATTGGAGGATGGTTTAACATCTCTTCAATATGTGTGTTCTTGGTCTAACTTAGTAGATCCTTTTTACATTACCTATAATTATTTTGGTTAATTCTCTGTCTAAAAGATAGATGAAGAGTTGGTGGTTGAAACTTGTAAAAGAATGATAATAACGCGTATTGTAAATTAATTGTACTCAACGGATACTCTACCTAGTGAAATTATCTTAGGTTCAAACTTCATAGAGATAAATAATTGAAATTGCAGGTCTTGAGCCTAATAATAGTTTTTTTTATTTCCCGAAAATATATAATGGAAGTGCATATTTATATTTAATGCTACTTTAGCTTAGTTGAATCATGTAGTTAGTGTTTTAATGATCCAAATGTTGGCTGAAATTTCAAACAGGACTAAAGTTTTGTATTTCTAGTTGAACATTGCTTTGGGTGTAAATCCTGAAGATCTTTATATACCATATGCCCTTATTAGATGCATCTTTTCCAATCCCTCATTTGTTGGTCTTACTTGCTACTCCCTCTGTCCCAATTTATGGGATGACATTTGAAAGGGAGATTTTTGAAGCTTGTGGTCTAAATAAGGCATAGATATTTTTGTGACTATAAATCATCTTAGTAAGGATAAAATGGAAGTTTAAAGCTCATTGTTACTAATTATAGAAATGTGTCATTTTTTTAGGGATTGAATACGAAGGAAAGAGTGTCACATAAACTGGGGATGGGATAGAGGGAGTATATTATATTTGTCATGGTTTCAATTTGTATACCTATTTTCCCTTTTGCTTGTTCTTATAAATAATTTATATTGCAGGTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTGGTATGCCATGAACTCATTCTCCCTTTTTCCTTGTATGTATGACATCTTAGTCACTTCTCTATTTATTTCATGTATGCCTTAACAATTAAATTTTTGTATATTGGAGCTTTTTTGGTATTTATTCTCTTATTACTATTACTAGATAACAATTTAACATGAACCAAAATTATATTTAATTTTATAAATGAGGAAAAAGTTTTTAATTGGTTACCTTTATTTACAACCTTTATGCCCCCGCTTTCTCACTCTTTCTCCTTCTATAATCTAGGAATTACATTTGTTATTCCTATAACTCTCTTAGAACTGATAGTGTACTTGTAACCTTCCTTTCCCTTTCCTTACCATGCCAGCCTGCCTTAATGCCTTCGTTGTTTTATGCTCTCTCAATTTCTTTGAAAATATGTCCTTGTTAGATATTCCATCAACTGACTATGATAATTGATAAGCCCACTTTTTTTCTCCTTCTTTATTGAGGGTAATGTGTGCGGGTTATAAACATGTTGATTGGTCATTCTGTCTGGGATTCTCATCCTGTATGCTTAATTTATTGATTATGGAATCATTCTTACTTGTACGTTACATGGCTTCCCCATTTCCTTAAAAACTCACACTTATCCCTTTATCACAGCAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGGTCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTTTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACAGATTCTAAGCAGTGGCAGAGTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTA</genome_strand>
        <mrna_strand>TTTCAATGGCTTCTAGCTCTCATAGAGGCAGTGATTTCTACGGGGCTGCTTCATATAGATCCAG.......................................................................................................AGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGGTCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGTTAAGTGCAACTCACTTTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACAGATTCTAAGCAGTGGCAGAGTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321685" ref_strand="+" ref_description="SGN-E321685 [cTOB-25-P8]">
      <seq>tttcaatggcttctagctctcatagaggcagtgatttctacggggctgcttcatatagatccagagatggattgagcacgaggcaagtaggtagtgcagatgaaatacagttgcggattgatccgatgcacggagatttagatgatgagatcacaggtcttcgcaagcaagtaaaacagctcagaaatgtagcacaagaaattgagtcggaagcaaagtatcagaatgattttattagccaactgcaaatgacattgatcaaagctcaggcaggagtaaagaacaacatgagacggttgaacaggagtatcatccaggaagggtcaaaccatgtgatgcatgtggttctttttgctctattttgcttctttataatatattggttggccaagttttcacggagttaagtgcaactcactttctatgttggtttgctggttcctggtacaagttctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="131200" stop="127956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130900" g_stop="130837" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130836" i_stop="130734" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130733" g_stop="130610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="188" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130609" i_stop="129156" i_length="1454">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129155" g_stop="129099" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="245" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129098" i_stop="128471" i_length="628">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128470" g_stop="128256" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="460" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E321685" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130900" e_stop="130837"/>
          <exon e_start="130733" e_stop="130610"/>
          <exon e_start="129155" e_stop="129099"/>
          <exon e_start="128470" e_stop="128256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGCTTCTAGCTCTCATAGAGGCAGTGATTTCTACGGGGCTGCTTCATATAGATCCAGGTATTTACGGAAATAAAGTTTTTTTTTAATCATTTTCTAAATTACACTTTCTTTTGGTTTATTTTTGAGGAAATTAAGTTGTTTAATGTGTTTGATTAATCAGAGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAATGTATGTTTCCCCAACACTTTGTCTTTGTTTCCGATTTTGGTTTTGTAGGAGAATAGCTATTGCATAACTGGTGGCGTTTGTACGATTAATTTACATTTGAAATTTGGTGATGTCTTATTCTGTTAGAATATAATATTCATTAGAAAACCAAAATGAAACTTGCTAGGCTTAGAGACACGTAAACACGCTTCTTTAATATAGTTGAAGTATCTCAGCGAGCAAATAGATAGCTGAAGTCTCTCTACGACCAAACAGAAATATTATGGTAGCTCTATCTTGGTGATTACAACTTTACGTGTTTCAAAAATGTTGATCTTCTATTCATGAATCTAGGATTTATATTTTTGATCAATGTCTCCCTTATATGAATTTTAGACATCAAGAATGGATCTGATACAAAATTCATTTTGGATATTAATAAACTACTTTAGAAATCCAAAAGACTTGAAACTATTTAATAAAATCCGTTGTTTCAAAATATATTGAGACATCATCTAACAATCTCCCGCTAGTTTCAATATATGAAAATAAGAGGCAGTTCTAGTAATATAAGTCAATGATGATGCCTTAACTTGATAATAAATTGCTATGTTTAGGCTTCAAGTGATTGTACAATGGTAAAGTGAGACAAGTCACATGAGAAGATTATTGGAGGATGGTTTAACATCTCTTCAATATGTGTGTTCTTGGTCTAACTTAGTAGATCCTTTTTACATTACCTATAATTATTTTGGTTAATTCTCTGTCTAAAAGATAGATGAAGAGTTGGTGGTTGAAACTTGTAAAAGAATGATAATAACGCGTATTGTAAATTAATTGTACTCAACGGATACTCTACCTAGTGAAATTATCTTAGGTTCAAACTTCATAGAGATAAATAATTGAAATTGCAGGTCTTGAGCCTAATAATAGTTTTTTTTATTTCCCGAAAATATATAATGGAAGTGCATATTTATATTTAATGCTACTTTAGCTTAGTTGAATCATGTAGTTAGTGTTTTAATGATCCAAATGTTGGCTGAAATTTCAAACAGGACTAAAGTTTTGTATTTCTAGTTGAACATTGCTTTGGGTGTAAATCCTGAAGATCTTTATATACCATATGCCCTTATTAGATGCATCTTTTCCAATCCCTCATTTGTTGGTCTTACTTGCTACTCCCTCTGTCCCAATTTATGGGATGACATTTGAAAGGGAGATTTTTGAAGCTTGTGGTCTAAATAAGGCATAGATATTTTTGTGACTATAAATCATCTTAGTAAGGATAAAATGGAAGTTTAAAGCTCATTGTTACTAATTATAGAAATGTGTCATTTTTTTAGGGATTGAATACGAAGGAAAGAGTGTCACATAAACTGGGGATGGGATAGAGGGAGTATATTATATTTGTCATGGTTTCAATTTGTATACCTATTTTCCCTTTTGCTTGTTCTTATAAATAATTTATATTGCAGGTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTGGTATGCCATGAACTCATTCTCCCTTTTTCCTTGTATGTATGACATCTTAGTCACTTCTCTATTTATTTCATGTATGCCTTAACAATTAAATTTTTGTATATTGGAGCTTTTTTGGTATTTATTCTCTTATTACTATTACTAGATAACAATTTAACATGAACCAAAATTATATTTAATTTTATAAATGAGGAAAAAGTTTTTAATTGGTTACCTTTATTTACAACCTTTATGCCCCCGCTTTCTCACTCTTTCTCCTTCTATAATCTAGGAATTACATTTGTTATTCCTATAACTCTCTTAGAACTGATAGTGTACTTGTAACCTTCCTTTCCCTTTCCTTACCATGCCAGCCTGCCTTAATGCCTTCGTTGTTTTATGCTCTCTCAATTTCTTTGAAAATATGTCCTTGTTAGATATTCCATCAACTGACTATGATAATTGATAAGCCCACTTTTTTTCTCCTTCTTTATTGAGGGTAATGTGTGCGGGTTATAAACATGTTGATTGGTCATTCTGTCTGGGATTCTCATCCTGTATGCTTAATTTATTGATTATGGAATCATTCTTACTTGTACGTTACATGGCTTCCCCATTTCCTTAAAAACTCACACTTATCCCTTTATCACAGCAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGGTCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTTTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGA</genome_strand>
        <mrna_strand>TTTCAATGGCTTCTAGCTCTCATAGAGGCAGTGATTTCTACGGGGCTGCTTCATATAGATCCAG.......................................................................................................AGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGGTCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGTTAAGTGCAACTCACTTTCTATGTTGGTTTGCTGGTTCCTGGTACAAGTTCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210789" ref_strand="+" ref_description="SGN-E210789 [cLEC-68-O2]">
      <seq>tcattttaatttctgcaaaaaatattgctaccatgggaagtgtaggtgattcgaaaactcatcagaggaaacccagatttttgtgccttcatggatttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctangggtcacactataccaagattcgatgagaaaggattagagagtgtgcttagtttcattgagaagtgcaagaagagattaacaagtggatcagtttgataattttttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135961" stop="139724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136261" g_stop="136526" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="365" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="407" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="537" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="639" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139329" g_stop="139424" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="734" r_length="95" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E210789" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136261" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGAATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAA</genome_strand>
        <mrna_strand>TCATTTTAATTTCTGCAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTANGGGTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTGTGCTTAGTTTCATTGAGAA-GTGCAAGAAGAGATTAACAAGTGGATCAGTTTGATAATTTTTTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355674" ref_strand="+" ref_description="SGN-E355674 [cLHT-1-K3]">
      <seq>tcatttaaatttctgaaaaagtattgctaccatgggaagtgtaggtgaatcgaaaactgatcagaggaaacccagatttttgtgccttcatggatttcgaacaagtggggaaattttgaagaagcaaatatttgataaatggccaattgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgattaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtccgggttgcaggctaaggaagtgggacttacaaaggcgtcaaaaattaaatatctgatcataattggaggtgctaaatttcagaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaagaagtatgggatagaactgttggaatcatgtattgatccagtggtgattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135961" stop="139499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136261" g_stop="136526" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="364" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="406" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="536" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139199" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="608" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E355674" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136261" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGAATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATC</genome_strand>
        <mrna_strand>TCATTTAAATTTCTG-AAAAAGTATTGCTACCATGGGAAGTGTAGGTGAATCGAAAACTGATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGGAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAATTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATTAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCCGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCGTCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCAGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAGAAGTATGGGATAGAACTGTTGGAATCATGTATTGATCCAGTGGTGATTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271198" ref_strand="+" ref_description="SGN-E271198 [cLEM-5-M15]">
      <seq>tcattttaatttctgcaaaaaatattgctaccatgggaagtgtaggtgattcgaaaactcatcagaggaaacccagatttttgtgccttcatggatttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaagaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135961" stop="137541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136261" g_stop="136526" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="365" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="407" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137241" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="458" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E271198" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136261" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGAATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGA</genome_strand>
        <mrna_strand>TCATTTTAATTTCTGCAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAA...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395251" ref_strand="+" ref_description="SGN-E395251 [TUS-46-C18]">
      <seq>ttttaatttctgcaaaaaatattgctaccatgggaagtgtaggtgattcgaaaactcatcagaggaaacccagatttttgtgccttcatggatttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135964" stop="143383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136264" g_stop="136526" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="362" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="404" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E395251" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136264" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG</genome_strand>
        <mrna_strand>TTTTAATTTCTGCAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201135" ref_strand="+" ref_description="SGN-E201135 [cLEC-10-M8]">
      <seq>tttaatttctgcaaaaaatattgctaccatgggaagtgtaggtgattcgaaaactcatcagaggaaacccagatttttgtgccttcatggatttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtatctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135965" stop="137629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136265" g_stop="136526" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="361" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="403" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137329" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="542" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E201135" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136265" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTC</genome_strand>
        <mrna_strand>TTTAATTTCTGCAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237555" ref_strand="+" ref_description="SGN-E237555 [cLED-19-P3]">
      <seq>tttaatttctgcaaaaaatattgctaccatgggaagtgtaggtgattcgaaaactcatcagaggaaacccagatttttgtgccttcatggatttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135965" stop="137025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136265" g_stop="136526" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="361" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E237555" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136265" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG</genome_strand>
        <mrna_strand>TTTAATTTCTGCAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208471" ref_strand="+" ref_description="SGN-E208471 [cLEC-39-C3]">
      <seq>ttaatttctgcaaaaaatattgctaccatgggaagtgtaggtgattcgaaaactcatcagaggaaacccagatttttgtgccttcatggatttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135966" stop="143359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136266" g_stop="136526" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="360" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137042" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="381" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E208471" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136266" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCA</genome_strand>
        <mrna_strand>TTAATTTCTGCAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211623" ref_strand="+" ref_description="SGN-E211623 [cLEC-67-D13]">
      <seq>atttctgcaaaaaatattgctaccatgggaagtgtaggtgattcgaaaactcatcagaggaaacccagatttttgtgccttcatggatttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttgggttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135969" stop="137617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136269" g_stop="136526" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="357" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="399" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137317" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="526" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E211623" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136269" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTT</genome_strand>
        <mrna_strand>ATTTCTGCAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGGTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202580" ref_strand="+" ref_description="SGN-E202580 [cLEC-19-B15]">
      <seq>atttctgcaaaaaatattgctaccatgggaagtgtaggtgattcgaaaactcatcagaggaaacccagatttttgtgccttcatggatttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135969" stop="137605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136269" g_stop="136526" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="357" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="399" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137305" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="514" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E202580" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136269" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTT</genome_strand>
        <mrna_strand>ATTTCTGCAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242111" ref_strand="+" ref_description="SGN-E242111 [cLED-37-E2]">
      <seq>tttctgcaaaaaatattgctaccatgggaagtgtaggtgattcgaaaactcatcataggaaacccagatttttgtgccttcatggatttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtgggttcaattcaataaggaatttacagagtctgagaattttgataaatgtcttgaatacattgaagaatgtatgatcaaacatggacctttcgatggtcttcttgggttctatcagggggcaattctttccggagcattgtcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135970" stop="137352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136270" g_stop="136526" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="356" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137052" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="387" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E242111" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136270" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGT</genome_strand>
        <mrna_strand>TTTCTGCAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCATAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGGTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTCTGAGAATTTTGATAAATGTCTTGAATACATTGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGGTTCTATCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723438" ref_strand="+" ref_description="SGN-E723438 [FC20BH11]">
      <seq>gcaaaaaatattgctaccatgggaagtgtaggcgattcgaaaactcatcagaggaaacccagatttttgtgccttcatggatttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgattaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtccgggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaagaagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagattcgatgagaaaggattagagagtatgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataattttttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135975" stop="139726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136275" g_stop="136526" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="351" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="393" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="523" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="625" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139329" g_stop="139426" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="723" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E723438" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136275" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAA</genome_strand>
        <mrna_strand>GCAAAAAATATTGCTACCATGGGAAGTGTAGGCGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATTAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCCGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAGAAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241300" ref_strand="+" ref_description="SGN-E241300 [cLED-26-B24]">
      <seq>aaaatattgctaccatgggaagtgtaggtgattcgaaaactcatcagaggaaacccagatttttgtgccttcatggatttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggagttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135979" stop="137539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136279" g_stop="136526" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="347" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="389" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137239" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="438" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E241300" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136279" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTG</genome_strand>
        <mrna_strand>AAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGAGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421222" ref_strand="+" ref_description="SGN-E421222 [STM-32-B13]">
      <seq>actttctgaaaaaaaataaatatataaattgttgctaccatgggaagtgaaggtgattgcaaaactaatcaaaggaaacccagatttctttgccttcatggatttcgaacgagtggagcaattttgaagaagcaaatatttgataaatggccaactcaagtggtggataaattggatctagtttttgttgatgcgccttttccatctcaaggcaaatctgaagttgaaggcatctttgaccctccctattacgagtggttccaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgattaagcatggacctttcgatggtcttcttggtttctctcagggggcaattctttctggaggattgtccgggttgcaggctaaggaagtgggacttacaaaggttccaaaaataaaaaatctgataataattggaggtgctaaatttcagaataaatctgtggccgaaaaggcttattcatcagcaattacatgcccttcccttcattttttaggtgagaaagattacctaaagaagtatgggatagaactgtttgaatcatgtgttgatccagtggtgattcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135977" stop="139500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136285" g_stop="136526" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="273" r_length="242" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="372" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="414" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="544" r_length="130" r_score="0.908"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.921" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139200" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="617" r_length="73" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E421222" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136285" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCA</genome_strand>
        <mrna_strand>TTGCTACCATGGGAAGTGAAGGTGATTGCAAAACTAATCAAAGGAAACCCAGATTTCTTTGCCTTCATGGATTTCGAACGAGTGGAGCAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTCAAGTGGTGGATAAATTGGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTCCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATTAAGCATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCTGGAGGATTGTCCGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGTTCCAAAAATAAAAAATCTGATAATAATTGGAGGTGCTAAATTTCAGAATAAATCTGTGGCCGAAAAGGCTTATTCATCAGCAATTACATGCCCTTCCCTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGATTACCTAAAGAAGTATGGGATAGAACTGTTTGAATCATGTGTTGATCCAGTGGTGATTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467318" ref_strand="+" ref_description="SGN-E467318 [cSTB-46-C4]">
      <seq>cagactcattttactttctgaaaaaaaataaatatataaattgttgctaccatgggaagtgaaggtgattgcaaaactaatcaaaggaaacccagatttctttgccttcatggatttcgaacgagtggagcaattttgaagaagcaaatatttgataaatggccaactcaagtggtggataaattggatctagtttttgttgatgcgccttttccatctcaaggcaaatctgaagttgaaggcatctttgaccctccctattacgagtggttccaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgattaagcatggacctttcgatggtcttcttggtttctctcagggggcaattctttctggaggattgtccgggttgcaggctaaggaagtgggacttacaaaggttccaaaaataaaaaatctgataataattggaggtgctaaatttcagaataaatctgtggccgaaaaggcttattcatcagcaattacatgcccttcccttcatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135977" stop="137618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136285" g_stop="136526" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="285" r_length="242" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="384" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="426" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137318" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="554" r_length="128" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E467318" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136285" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTT</genome_strand>
        <mrna_strand>TTGCTACCATGGGAAGTGAAGGTGATTGCAAAACTAATCAAAGGAAACCCAGATTTCTTTGCCTTCATGGATTTCGAACGAGTGGAGCAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTCAAGTGGTGGATAAATTGGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTCCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATTAAGCATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCTGGAGGATTGTCCGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGTTCCAAAAATAAAAAATCTGATAATAATTGGAGGTGCTAAATTTCAGAATAAATCTGTGGCCGAAAAGGCTTATTCATCAGCAATTACATGCCCTTCCCTTCATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407463" ref_strand="+" ref_description="SGN-E407463 [PPI-7-M6]">
      <seq>aatttctgaaaaaaaataaatacataaattgttgccaccacgggaagtgaaggtgcttgcaaaactaatcaaaggaaacccagacttctttgccttcatggacttcgaaacgagtggagcaattttgaagaagcaaatatttgataaatggccaactcaagtggtggactaaattggatctagtttttgttgatgcgccttttccatctcaaggcaaatctgaagttgaaggcatctttgaccctccctattacgaagtggttccaattcaataaggaatttacagagtatgaaaattttgataaatgtcttgaataccatagaagaatgtatgattaagcatggacctttcgatggtcttcttggtttctctcagggggcaattctttctggaggaattgtccgggttgcaggctaaggaagtgggacttacaaaggttccaaaaataaaaaatctgataataattggaggtgctaaatttcagaataaatctgtggccgaaaaggcttattcatcagcaattacatgcccttcccttcattttttaggtgagaaagattacctaaagaagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggccacactataccaagatttgatgagaaaggattagagagtatgcttagtttcattgagaaggtgcaagcagagattaacaagtgaacaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136073" stop="139702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136306" g_stop="136526" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="276" r_length="224" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="376" r_length="100" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="419" r_length="43" r_score="0.881"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="549" r_length="130" r_score="0.908"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.921" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="651" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139329" g_stop="139402" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="725" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E407463" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136306" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCG-AACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGA-TAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACG-AGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATA-CATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGA-GCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTG</genome_strand>
        <mrna_strand>GTGCTTGCAAAACTAATCAAAGGAAACCCAGACTTCTTTGCCTTCATGGACTTCGAAACGAGTGGAGCAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTCAAGTGGTGGACTAAATTGGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAAGTGGTTCCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAAAATTTTGATAAATGTCTTGAATACCATAGAAGAATGTATGATTAAGCATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCTGGAGGAATTGTCCGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGTTCCAAAAATAAAAAATCTGATAATAATTGGAGGTGCTAAATTTCAGAATAAATCTGTGGCCGAAAAGGCTTATTCATCAGCAATTACATGCCCTTCCCTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAGATTACCTAAAGAAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGCCACACTATACCAAGATTTG...................................................................................................ATGAGAAAGGATTAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGCAGAGATTAACAAGTGAACAAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208825" ref_strand="+" ref_description="SGN-E208825 [cLEC-51-P8]">
      <seq>ctgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtttcacactataccaagattcgatgagaaaggattagagagtgtgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataattttttttcaaaaaaaaaaaatagtggtagtccctagtttgggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136108" stop="139753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136408" g_stop="136526" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="218" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="260" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="390" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="494" r_length="104" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139329" g_stop="139453" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="620" r_length="126" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E208825" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136408" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGG--TCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTC-AAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATG</genome_strand>
        <mrna_strand>CTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTTTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTGTGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695222" ref_strand="+" ref_description="SGN-E695222 [LH_Ea05P12](-)">
      <seq>atctagtttttgttgatgcgccttttccatctcaaggcaaatctgaagttgaaggcatctttgactctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgattaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtccgggttgcaggctaaggaagtgggacttacaaaggcgtcaaaaattaaatatctgatcataattggaggtgctaaatttcagaataaatcagtggcggaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaagaagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagatttgatgagaaaggattagagagtatgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataatttttttcaaaaaaaaaatagtgctagtccctcgtttgggacatgtagttaccaccttttttaaatataaataaaatagctccgagtaattagtattttacaatgtaggcatgaaaaataccagaccatgctcttgtatttaccgcagttttccaatgggttatattaattaaaaaacttttatcagttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136129" stop="139902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136429" g_stop="136526" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="197" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="369" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="471" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139329" g_stop="139608" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="748" r_length="277" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E695222" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136429" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGTTCTAACTTTTA</genome_strand>
        <mrna_strand>ATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATCTTTGACTCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATTAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCCGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCGTCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCAGAATAAATCAGTGGCGGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAGAAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTTG...................................................................................................ATGAGAAAGGATTAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAA-TTTTTTTC-AAAAAAAAAATAGTGCTAGTCCCTCGTTTGGGACATGTAGTTACCACCTTTTTTAAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGCATGAAAAATACCAGACCATGCTCTTGTATTTACCGCAGTTTTCCAATGGGTTATATTAAT-TAAAAAACTTTTATCAGTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691382" ref_strand="+" ref_description="SGN-E691382 [LH_Ea05P12]">
      <seq>ttctagtttttgttgatgcgccttttccatctcaaggcacatctgaagttgaaggcatctttgactctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgattaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtccgggttgcaggctaaggaagtgggacttacaaaggcgtcaaaaattaaatatctgatcataattggaggtgctaaatttcagaataaatcagtggcggaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaagaagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagatttgatgagaaaggattagagagtatgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataatttttttcaaaaaaaaaatagtgctagtccctcgtttgggacatgtagttaccaccttttttaaatataaataaaatagctccgagtaattagtattttacaatgtaggcatgaaaaataccagaccatgctcttgtatttaccgcagtttgccattcggttatattaatataaaaaacttttatcagttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136130" stop="139902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136429" g_stop="136526" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="197" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="369" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="471" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139329" g_stop="139608" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="749" r_length="278" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E691382" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136429" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGTTCTAACTTTTA</genome_strand>
        <mrna_strand>TTCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCACATCTGAAGTTGAAGGCATCTTTGACTCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATTAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCCGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCGTCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCAGAATAAATCAGTGGCGGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAGAAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTTG...................................................................................................ATGAGAAAGGATTAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAA-TTTTTTTC-AAAAAAAAAATAGTGCTAGTCCCTCGTTTGGGACATGTAGTTACCACCTTTTTTAAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGCATGAAAAATACCAGACCATGCTCTTGTATTTACCGCAGTTTGCCATTCGGTTATATTAATATAAAAAACTTTTATCAGTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208463" ref_strand="+" ref_description="SGN-E208463 [cLEC-37-N18]">
      <seq>ctcgagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcaaggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagattcgatgagaaaggattagagagtgtgcttantttcattgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136130" stop="143970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136429" g_stop="136526" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="197" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="369" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="471" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139329" g_stop="139367" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="510" r_length="39" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E208463" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136429" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGA</genome_strand>
        <mrna_strand>CTCGAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAA.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTGTGCTTANTTTCATTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354929" ref_strand="+" ref_description="SGN-E354929 [cTOS-19-A6]">
      <seq>tccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagattcgatgagaaaggattagagagtgtgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataattttttttcaaaaaaaaaaaatagtggtagtccctagtttgggacatgtagttaccacctttttttaatataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136196" stop="139779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136496" g_stop="136526" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="130" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="172" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="302" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="404" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139329" g_stop="139479" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="556" r_length="152" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E354929" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136496" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTC-AAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAA</genome_strand>
        <mrna_strand>TCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTGTGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238254" ref_strand="+" ref_description="SGN-E238254 [cLED-22-D8]">
      <seq>ctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagattcggtaaacctcttttaattcaacttcatttaaatgttaattatattctgtgttgttaattaattcttcttcttcttcttttttttttcagatgagaaaggattagagagtgtgcttagtttcattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136199" stop="143969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136499" g_stop="136526" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="127" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="169" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="299" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139366" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="527" r_length="228" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E238254" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136499" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAA-TCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAG</genome_strand>
        <mrna_strand>CTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAA-C-C---T--C----TT-TTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATTCTTCTTCTTCTTCTTTTTTTTTTCAGATGAGAAAGGATTAGAGAGTGTGCTTAGTTTCATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239664" ref_strand="+" ref_description="SGN-E239664 [cLED-33-I13]">
      <seq>ctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagattcggtaaacctcttttaattaaacttcatttaaatgttaattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136199" stop="139583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136499" g_stop="136526" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="127" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="169" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="299" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139272" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="443" r_length="144" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E239664" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136499" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAA</genome_strand>
        <mrna_strand>CTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAATTAAACT-TCATTTAAATGTTAATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231515" ref_strand="+" ref_description="SGN-E231515 [cLED-4-D5]">
      <seq>tggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagattcgatgagaaaggattagagagtgtgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataattttttttcaaaaaaaaaaaatagtggtagtccctagtttgggacatgtagttaccacctttttttaatataaataaaatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136316" stop="139789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136509" g_stop="136526" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="117" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="159" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="289" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="391" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139329" g_stop="139489" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="553" r_length="162" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E231515" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136509" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTC-AAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCT</genome_strand>
        <mrna_strand>TGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTGTGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377943" ref_strand="+" ref_description="SGN-E377943 [TUS-20-B2]">
      <seq>ggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggaccttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagattcgatgagaaaggattagagagtgtgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataattttttttcaaaaaaaaaaaatagtggtagtccctagtttgggacatgtagttaccacctttttttaatataaataaaatagctccgagtaattagtattttacaatgtaggaatgaaaaataccagaccatgctattgtatttaccgcagtttgccattcgattatattgatataaaaatcttttatcagttctaacttttagaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136316" stop="139915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136510" g_stop="136526" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="115" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="157" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="287" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="389" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139329" g_stop="139615" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="677" r_length="288" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E377943" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136510" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTC-AAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGTTCTAACTTTTAGAAATTT</genome_strand>
        <mrna_strand>GGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACC-TTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTGTGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGTTCTAACTTTTAGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233202" ref_strand="+" ref_description="SGN-E233202 [cLED-6-F18]">
      <seq>ggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggaccttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagattcgatgagaaaggattagagagtgtgcttagtttcattgagaaggtgctagaagagattaacaagtgatcaagtttgataattttttttcaaaaaaaaaaaatagtggtagtccctagtttgggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136316" stop="139753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136510" g_stop="136526" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="115" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="157" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="287" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="389" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139329" g_stop="139453" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="515" r_length="126" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E233202" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136510" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTC-AAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATG</genome_strand>
        <mrna_strand>GGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACC-TTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTGTGCTTAGTTTCATTGAGAAGGTGCTAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378019" ref_strand="+" ref_description="SGN-E378019 [TUS-20-B2](-)">
      <seq>aggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggaccttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagattcgatgagaaaggattagagagtgtgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataattttttttcaaaaaaaaaaaatagtggtagtccctagtttgggacatgtagttaccacctttttttaatataaataaaatagctccgagtaattagtattttacaatgtaggaatgaaaaataccagaccatgctattgtatttaccgcagtttgccattcgattatattgatataaaaatcttttatcagttctaacttttagaaatttatagtttaaaatatgtttgcaaaaancatatattttcattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136324" stop="139958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136624" g_stop="136724" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="142" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="272" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="374" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139329" g_stop="139666" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="714" r_length="340" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E378019" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136624" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTC-AAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGTTCTAACTTTTAGAAATTTATAGTTTAAAATATGTTTGCAAAAA-CATATATTTTCATTTTCATTTTGGAA</genome_strand>
        <mrna_strand>AGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACC-TTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTGTGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGTTCTAACTTTTAGAAATTTATAGTTTAAAATATGTTTGCAAAAANCATATATTTTCATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290810" ref_strand="+" ref_description="SGN-E290810 [cLET-10-A20]">
      <seq>tcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagattcgatgagaaaggattagagagtgtgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataattttttttcaaaaaaaaaaaatagtggtagtccctagtttgggacatgtagttaccacctttttttaatataaataaaatagctccgagtaattagtattttacaatgtaggaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136746" stop="139828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137046" g_stop="137063" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="148" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="250" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="139329" g_stop="139531" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="454" r_length="204" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E290810" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137046" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTC-AAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCA</genome_strand>
        <mrna_strand>TCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTGTGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292880" ref_strand="+" ref_description="SGN-E292880 [cLET-11-F17]">
      <seq>tcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagattcgatgagaaaggattagagagtgtgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataattttttttcaaaaaaaaaaaatagtggtagtccctagtttgggacatgtagttaccacctttttttaatataaataaaatagctccgagtaattagtattttacaatgtaggaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136746" stop="139828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137046" g_stop="137063" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="148" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="250" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="139329" g_stop="139531" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="454" r_length="204" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E292880" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137046" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTC-AAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCA</genome_strand>
        <mrna_strand>TCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTGTGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696532" ref_strand="+" ref_description="SGN-E696532 [LH_Ea09G02](-)">
      <seq>cctcgtgccgaattcggcacgaggatcataattggaggtgctaaatttcagaataaatcagtggcggaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaagaagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagatttgatgagaaaggattagagagtatgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataatttttttcaaaaaaaaaatagtgctagtccctcgtttgggacatgtagttaccaccttttttaaatataaagagaatagctccgagtaattagtattttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136929" stop="158964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137229" g_stop="137320" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="115" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="217" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139329" g_stop="139526" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="413" r_length="196" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E696532" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137229" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAA</genome_strand>
        <mrna_strand>GATCATAATTGGAGGTGCTAAATTTCAGAATAAATCAGTGGCGGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAGAAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTTG...................................................................................................ATGAGAAAGGATTAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAA-TTTTTTTC-AAAAAAAAAATAGTGCTAGTCCCTCGTTTGGGACATGTAGTTACCACCTTTTTTAAATATAAAGAGAATAGCTCCGAGTAATTAGTATTTTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692692" ref_strand="+" ref_description="SGN-E692692 [LH_Ea09G02]">
      <seq>cccgtctcgtgccgaattcggcacgaggatcataattggaggtgctaaatttcagaataaatcagtggcggaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaagaagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagatttgatgagaaaggattagagagtatgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataatttttttcaaaaaaaaaatagtgctagtccctcgtttgggacatgtagttaccaccttttttaaatataaataaaatagctccgagtaattagtattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="136929" stop="139811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137229" g_stop="137320" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="119" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="221" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="139329" g_stop="139520" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="411" r_length="190" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E692692" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137229" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAAT</genome_strand>
        <mrna_strand>GATCATAATTGGAGGTGCTAAATTTCAGAATAAATCAGTGGCGGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAGAAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTTG...................................................................................................ATGAGAAAGGATTAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAA-TTTTTTTC-AAAAAAAAAATAGTGCTAGTCCCTCGTTTGGGACATGTAGTTACCACCTTTTTTAAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397660" ref_strand="+" ref_description="SGN-E397660 [TUS-46-C18](-)">
      <seq>aagtttggaatcatgtgttgatccaggggtgattcatcatcttaggggtcacactataccaagattcgatgagaaaggattagagagtgtgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataattttttttcaaaaaaaaaaaatagtggtagtccctagtttgggacatgtagttaccacctttttttaatataaataaaatagctccgagtaattagtattttacaatgtaggaatgaaaaataccagaccatgctattgtatttaccgcagtttgccattcgattatattgatataaaaatcttttatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="138861" stop="139897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139161" g_stop="139229" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="139329" g_stop="139597" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="338" r_length="270" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E397660" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139161" e_stop="139229"/>
          <exon e_start="139329" e_stop="139597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTC-AAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGT</genome_strand>
        <mrna_strand>AAGT-TTGGAATCATGTGTTGATCCAGGGGTGATTCATCATCTTAGGGGTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTGTGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339859" ref_strand="+" ref_description="SGN-E339859 [cTOF-3-O9]">
      <seq>gatactgtactatttacccaaaattttctccaaaaggtacgggaacactatgaatatggcaaattcagccgccaccatggcaggtgaaggaactgccaacgccagtcagaggaaattacccagatttttgtgccttcatgggtttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcgaggcaaatctgaagttgaaggcatatttgcccctccttattatgaatggtaccagttcaataaggaattgaatgagtatgagaattttgataactgtcttgattatatacaagagtgtatgattaagcacggacctttcgatggtcttcttggtttctcccagggggcaattctttctggagcattgcgtggattgcaggataagggagtgggacttactaaggttcgcaaaattaaatatctgatcataattggaggtgcgaaaatgcagattaaatcactggccgaaaaagcttattcaccagcaattacatgcccttccgttcactttttaggtgagaaagacttcctgaagccgtatgggatggaacttttggaatcatatgttgatccagtggtcattcatcatcctaagggccatactataccaagatttgatgagaaaggattagagagcatgcttagtttcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="142031" stop="143967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142331" g_stop="142643" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142644" i_stop="142737" i_length="94">
            <donor d_prob="0.600" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142738" g_stop="142836" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="412" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142837" i_stop="143038" i_length="202">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143039" g_stop="143080" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="454" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143081" i_stop="143159" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143160" g_stop="143289" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="584" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143290" i_stop="143393" i_length="104">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="143394" g_stop="143495" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="686" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="143496" i_stop="143631" i_length="136">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143632" g_stop="143667" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="722" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E339859" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142331" e_stop="142643"/>
          <exon e_start="142738" e_stop="142836"/>
          <exon e_start="143039" e_stop="143080"/>
          <exon e_start="143160" e_stop="143289"/>
          <exon e_start="143394" e_stop="143495"/>
          <exon e_start="143632" e_stop="143667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTGTACTATTTACCCAAAATTTTCTCCAAAATGTACGGGAACACTATGAATATGGCAAATTCAGCCGCCACCATGGCAGGTGAAGGAACTGCCAACGCCAATCAGAGGAAATTACCCAGATTTTTGTGCCTTCATGGGTTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAATTGAAGTGGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATATTTGCCCCTCCTTATTATGAATGGTACCAGTTCAATAAGGTCGCGTTGTACGCCTAATTAATTCTTGCTAATTTTCAAATAAAAAAGGATAAAAATTATTTTATTTTATAACTGTTGTTGTTTTGAAATACAGGAATTGAATGAGTATGAGAATTTTGATAACTGTCTTGATTATATACAAGAGTGTATGATTAAGCACGGACCTTTCGATGGTCTTCTTGGTTTCTCCCAGGTATGATTTAATTATTTTAGTTGGATGCTTGGATATAAATTTGAAAAAATAAATAAATTAGTATTGATTCAATTCGATATTTTTTTATTTTCTCTTGCTTTTCTTCTTGATTCTGAAACTTTTTTGAGTCGACTCTTTTCTCTTTCTTTGCACGATCTGATACTGAGTAGTGAGTATTCTCTGTTTTGTTGATACGATTCAGGGGGCAATTCTTTCTGGAGCATTGCGTGGATTGCAGGATAAGGTACACACTAGCCCTTTTTAACGACAATCTTATTCCTCTTTTTACTTATCCATGGTTATTTTTGGTGTGATAATGGCAGGGAGTGGGACTTACTAAGGTTCGCAAAATTAAATATCTGATCATAATTGGAGGTGCGAAAATGCAGATTAAATCACTGGCCGAAAAAGCTTATTCACCAGCAATTACATGCCCTTCCGTTCACTTTTTAGGTACTTTCTGTCCCTACAATTTATCTTCGTTACGAACAAGTACTTTACAGTTTAAAACTAAATACTTATGAAAATTCTACACTTACATTTACTGGATATTACAGGTGAGAAAGACTTCCTGAAGCCGTATGGGATGGAACTTTTGGAATCATATGTTGATCCAGTGGTCATTCATCATCCTAAGGGCCATACTATACCAAGATTTGGTAAACCTCTTGACATTTTTATTAATTCACTCAATGTATTTTCTGTTGTGTTGCTCGGACTCTTTAAAATTGTCCGGTTTGAAGTAGCCTTTGTTGTTTAACAACAATGACAAATACCATCTTTTTTCTTTTCCAGATGAGAAAGGATTAGAGAGCATGCTTAGTTTCATTG</genome_strand>
        <mrna_strand>GATACTGTACTATTTACCCAAAATTTTCTCCAAAAGGTACGGGAACACTATGAATATGGCAAATTCAGCCGCCACCATGGCAGGTGAAGGAACTGCCAACGCCAGTCAGAGGAAATTACCCAGATTTTTGTGCCTTCATGGGTTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCGAGGCAAATCTGAAGTTGAAGGCATATTTGCCCCTCCTTATTATGAATGGTACCAGTTCAATAAG..............................................................................................GAATTGAATGAGTATGAGAATTTTGATAACTGTCTTGATTATATACAAGAGTGTATGATTAAGCACGGACCTTTCGATGGTCTTCTTGGTTTCTCCCAG..........................................................................................................................................................................................................GGGGCAATTCTTTCTGGAGCATTGCGTGGATTGCAGGATAAG...............................................................................GGAGTGGGACTTACTAAGGTTCGCAAAATTAAATATCTGATCATAATTGGAGGTGCGAAAATGCAGATTAAATCACTGGCCGAAAAAGCTTATTCACCAGCAATTACATGCCCTTCCGTTCACTTTTTAG........................................................................................................GTGAGAAAGACTTCCTGAAGCCGTATGGGATGGAACTTTTGGAATCATATGTTGATCCAGTGGTCATTCATCATCCTAAGGGCCATACTATACCAAGATTTG........................................................................................................................................ATGAGAAAGGATTAGAGAGCATGCTTAGTTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700170" ref_strand="+" ref_description="SGN-E700170 [FA12BD06]">
      <seq>gtagctgcaaaatgtacgggaaaactatgaatatgacaaattcagccgccaccatggcaggtgaaggaactgccaacgccaatcagaggaaattacccagatttttgtgccttcatgggtttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaattgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggcaaatctgaagttgaaggcatctttgaccctccttattatgaatggtaccagttcaataaggaattgaatgagtatgagaattttgataagtgtcttgattatatacaagagtgtatgattaagcacggacctttcgatggtcttcttggtttctcccagggggcaattctttctggagcattgcgtggattgcaggataagggagtgggacttactaaggttcgcaaaataaaatatctgatcataattggaggtgcgaaaatgcagattaaatcactggccgaaaaagcttattcaccagcaattacatgcccttccgttcactttttaggtgagaaagacttcctgaagccgtatgggatggaacttttggaatcatatgttgatccagtggtcattcatcatcctaagggccatactataccaagatttgatgagaaaggattagagagcatgcttagtttcatcgagaaggtgcaagaagagattagtacaagtgaacaagtttgatgaaattacatttttatatgatagctccctcctttgggaagtatgtctatctttaatttcttaaaaataatatggcctttaataacttaagcttttttgactctctataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="142058" stop="144129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142354" g_stop="142643" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142644" i_stop="142737" i_length="94">
            <donor d_prob="0.600" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142738" g_stop="142836" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="389" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142837" i_stop="143038" i_length="202">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143039" g_stop="143080" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="431" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143081" i_stop="143159" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143160" g_stop="143289" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="561" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143290" i_stop="143393" i_length="104">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="143394" g_stop="143495" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="663" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="143496" i_stop="143631" i_length="136">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143632" g_stop="143829" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="858" r_length="195" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E700170" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142354" e_stop="142643"/>
          <exon e_start="142738" e_stop="142836"/>
          <exon e_start="143039" e_stop="143080"/>
          <exon e_start="143160" e_stop="143289"/>
          <exon e_start="143394" e_stop="143495"/>
          <exon e_start="143632" e_stop="143829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCCAAAATGTACGGGAACACTATGAATATGGCAAATTCAGCCGCCACCATGGCAGGTGAAGGAACTGCCAACGCCAATCAGAGGAAATTACCCAGATTTTTGTGCCTTCATGGGTTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAATTGAAGTGGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATATTTGCCCCTCCTTATTATGAATGGTACCAGTTCAATAAGGTCGCGTTGTACGCCTAATTAATTCTTGCTAATTTTCAAATAAAAAAGGATAAAAATTATTTTATTTTATAACTGTTGTTGTTTTGAAATACAGGAATTGAATGAGTATGAGAATTTTGATAACTGTCTTGATTATATACAAGAGTGTATGATTAAGCACGGACCTTTCGATGGTCTTCTTGGTTTCTCCCAGGTATGATTTAATTATTTTAGTTGGATGCTTGGATATAAATTTGAAAAAATAAATAAATTAGTATTGATTCAATTCGATATTTTTTTATTTTCTCTTGCTTTTCTTCTTGATTCTGAAACTTTTTTGAGTCGACTCTTTTCTCTTTCTTTGCACGATCTGATACTGAGTAGTGAGTATTCTCTGTTTTGTTGATACGATTCAGGGGGCAATTCTTTCTGGAGCATTGCGTGGATTGCAGGATAAGGTACACACTAGCCCTTTTTAACGACAATCTTATTCCTCTTTTTACTTATCCATGGTTATTTTTGGTGTGATAATGGCAGGGAGTGGGACTTACTAAGGTTCGCAAAATTAAATATCTGATCATAATTGGAGGTGCGAAAATGCAGATTAAATCACTGGCCGAAAAAGCTTATTCACCAGCAATTACATGCCCTTCCGTTCACTTTTTAGGTACTTTCTGTCCCTACAATTTATCTTCGTTACGAACAAGTACTTTACAGTTTAAAACTAAATACTTATGAAAATTCTACACTTACATTTACTGGATATTACAGGTGAGAAAGACTTCCTGAAGCCGTATGGGATGGAACTTTTGGAATCATATGTTGATCCAGTGGTCATTCATCATCCTAAGGGCCATACTATACCAAGATTTGGTAAACCTCTTGACATTTTTATTAATTCACTCAATGTATTTTCTGTTGTGTTGCTCGGACTCTTTAAAATTGTCCGGTTTGAAGTAGCCTTTGTTGTTTAACAACAATGACAAATACCATCTTTTTTCTTTTCCAGATGAGAAAGGATTAGAGAGCATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAGTACAAGTGAACAAGTTTGATGAAATTACATTTTTATATGATAGATAGCTCCTCCTTTGGGAAGTATGTCTTATCTTTAATTTCTTAAAAATAATATGGCTTTGAATAACTTAA-ATTTTTTGACGCTCTACAAAAGAAAAA</genome_strand>
        <mrna_strand>GTAGCTGCAAAATGTACGGGAAAACTATGAATATGACAAATTCAGCCGCCACCATGGCAGGTGAAGGAACTGCCAACGCCAATCAGAGGAAATTACCCAGATTTTTGTGCCTTCATGGGTTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAATTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATCTTTGACCCTCCTTATTATGAATGGTACCAGTTCAATAAG..............................................................................................GAATTGAATGAGTATGAGAATTTTGATAAGTGTCTTGATTATATACAAGAGTGTATGATTAAGCACGGACCTTTCGATGGTCTTCTTGGTTTCTCCCAG..........................................................................................................................................................................................................GGGGCAATTCTTTCTGGAGCATTGCGTGGATTGCAGGATAAG...............................................................................GGAGTGGGACTTACTAAGGTTCGCAAAATAAAATATCTGATCATAATTGGAGGTGCGAAAATGCAGATTAAATCACTGGCCGAAAAAGCTTATTCACCAGCAATTACATGCCCTTCCGTTCACTTTTTAG........................................................................................................GTGAGAAAGACTTCCTGAAGCCGTATGGGATGGAACTTTTGGAATCATATGTTGATCCAGTGGTCATTCATCATCCTAAGGGCCATACTATACCAAGATTTG........................................................................................................................................ATGAGAAAGGATTAGAGAGCATGCTTAGTTTCATCGAGAAGGTGCAAGAAGAGATTAGTACAAGTGAACAAGTTTGATGAAATTACATTTTTATATGATAGCT--C-CCTCCTTTGGGAAGTATGTC-TATCTTTAATTTCTTAAAAATAATATGGCCTTTAATAACTTAAGCTTTTTTGACTCTCTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698653" ref_strand="+" ref_description="SGN-E698653 [FA07AF12]">
      <seq>cacggtaaaatgtacgggaaaactatgaatatgacaaattcagccgccaccatggcaggtgaaggaactgccaacgccaatcagaggaaattacccagatttttgtgccttcatgggtttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaattgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggcaaatctgaagttgaaggcatctttgaccctccttattatgaatggtaccagttcaataaggaattgaatgagtatgagaattttgataagtgtcttgattatatacaagagtgtatgattaagcacggacctttcgatggtcttcttggtttctcccagggggcaattctttctggagcattgcgtggattgcaggataagggagtgggacttactaaggttcgcaaaataaaatatctgatcataattggaggtgcgaaaatgcagattaaatcactggccgaaaaagcttattcaccagcaattacatgcccttccgttcactttttaggtgagaaagacttcctgaagccgtatgggatggaacttttggaatcatatgttgatccagtggtcattcatcatcctaagggccatactataccaagatttgatgagaaaggattagagagcatgcttagtttcatcgagaaggtgcaagaagagattagtacaagtgaacaagtttgatgacattacatttttatatgatagctcctcctttgggaagtatgtctatctttaatttcttaaaaataatatgggcttaaataacttaggctttttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="142062" stop="144101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142356" g_stop="142643" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142644" i_stop="142737" i_length="94">
            <donor d_prob="0.600" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142738" g_stop="142836" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="387" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142837" i_stop="143038" i_length="202">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143039" g_stop="143080" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="429" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143081" i_stop="143159" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143160" g_stop="143289" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="559" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143290" i_stop="143393" i_length="104">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="143394" g_stop="143495" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="661" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="143496" i_stop="143631" i_length="136">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143632" g_stop="143813" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="838" r_length="177" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E698653" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142356" e_stop="142643"/>
          <exon e_start="142738" e_stop="142836"/>
          <exon e_start="143039" e_stop="143080"/>
          <exon e_start="143160" e_stop="143289"/>
          <exon e_start="143394" e_stop="143495"/>
          <exon e_start="143632" e_stop="143813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAAAATGTACGGGAACACTATGAATATGGCAAATTCAGCCGCCACCATGGCAGGTGAAGGAACTGCCAACGCCAATCAGAGGAAATTACCCAGATTTTTGTGCCTTCATGGGTTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAATTGAAGTGGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATATTTGCCCCTCCTTATTATGAATGGTACCAGTTCAATAAGGTCGCGTTGTACGCCTAATTAATTCTTGCTAATTTTCAAATAAAAAAGGATAAAAATTATTTTATTTTATAACTGTTGTTGTTTTGAAATACAGGAATTGAATGAGTATGAGAATTTTGATAACTGTCTTGATTATATACAAGAGTGTATGATTAAGCACGGACCTTTCGATGGTCTTCTTGGTTTCTCCCAGGTATGATTTAATTATTTTAGTTGGATGCTTGGATATAAATTTGAAAAAATAAATAAATTAGTATTGATTCAATTCGATATTTTTTTATTTTCTCTTGCTTTTCTTCTTGATTCTGAAACTTTTTTGAGTCGACTCTTTTCTCTTTCTTTGCACGATCTGATACTGAGTAGTGAGTATTCTCTGTTTTGTTGATACGATTCAGGGGGCAATTCTTTCTGGAGCATTGCGTGGATTGCAGGATAAGGTACACACTAGCCCTTTTTAACGACAATCTTATTCCTCTTTTTACTTATCCATGGTTATTTTTGGTGTGATAATGGCAGGGAGTGGGACTTACTAAGGTTCGCAAAATTAAATATCTGATCATAATTGGAGGTGCGAAAATGCAGATTAAATCACTGGCCGAAAAAGCTTATTCACCAGCAATTACATGCCCTTCCGTTCACTTTTTAGGTACTTTCTGTCCCTACAATTTATCTTCGTTACGAACAAGTACTTTACAGTTTAAAACTAAATACTTATGAAAATTCTACACTTACATTTACTGGATATTACAGGTGAGAAAGACTTCCTGAAGCCGTATGGGATGGAACTTTTGGAATCATATGTTGATCCAGTGGTCATTCATCATCCTAAGGGCCATACTATACCAAGATTTGGTAAACCTCTTGACATTTTTATTAATTCACTCAATGTATTTTCTGTTGTGTTGCTCGGACTCTTTAAAATTGTCCGGTTTGAAGTAGCCTTTGTTGTTTAACAACAATGACAAATACCATCTTTTTTCTTTTCCAGATGAGAAAGGATTAGAGAGCATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAGTACAAGTGAACAAGTTTGATGAAATTACATTTTTATATGATAGATAGCTCCTCCTTTGGGAAGTATGTCTTATCTTTAATTTCTTAAAAATAATATGGCTTTGAATAACTTAAATTTTTTGACG</genome_strand>
        <mrna_strand>CACGGTAAAATGTACGGGAAAACTATGAATATGACAAATTCAGCCGCCACCATGGCAGGTGAAGGAACTGCCAACGCCAATCAGAGGAAATTACCCAGATTTTTGTGCCTTCATGGGTTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAATTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATCTTTGACCCTCCTTATTATGAATGGTACCAGTTCAATAAG..............................................................................................GAATTGAATGAGTATGAGAATTTTGATAAGTGTCTTGATTATATACAAGAGTGTATGATTAAGCACGGACCTTTCGATGGTCTTCTTGGTTTCTCCCAG..........................................................................................................................................................................................................GGGGCAATTCTTTCTGGAGCATTGCGTGGATTGCAGGATAAG...............................................................................GGAGTGGGACTTACTAAGGTTCGCAAAATAAAATATCTGATCATAATTGGAGGTGCGAAAATGCAGATTAAATCACTGGCCGAAAAAGCTTATTCACCAGCAATTACATGCCCTTCCGTTCACTTTTTAG........................................................................................................GTGAGAAAGACTTCCTGAAGCCGTATGGGATGGAACTTTTGGAATCATATGTTGATCCAGTGGTCATTCATCATCCTAAGGGCCATACTATACCAAGATTTG........................................................................................................................................ATGAGAAAGGATTAGAGAGCATGCTTAGTTTCATCGAGAAGGTGCAAGAAGAGATTAGTACAAGTGAACAAGTTTGATGACATTACA-TTTT-TAT-AT-GATAGCTCCTCCTTTGGGAAGTATGTC-TATCTTTAATTTCTTAAAAATAATATGGGCTTAAATAACTTAGGCTTTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249105" ref_strand="+" ref_description="SGN-E249105 [cLEF-49-P7]">
      <seq>atgaatatggcaaattcagccgccaccatggcaggtgaaggaactgccaacgccagtcagaggaaattacccagatttttgtgccttcatgggtttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcgaggcaaatctgaagttgaaggcatatttgcccctccttattatgaatggtaccagttcaataaggaattgaatgagtatgagaattttgataactgtcttgattatatacaagagtgtatgattaagcacggacctttcgatggtcttcttggtttctcccagggggcaattctttctggagcattgcgtggattgcaggataagggagtgggacttactaaggttcgcaaaattaaatatctgatcataattggaggtgcgaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="142080" stop="143523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142380" g_stop="142643" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142644" i_stop="142737" i_length="94">
            <donor d_prob="0.600" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142738" g_stop="142836" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="363" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142837" i_stop="143038" i_length="202">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143039" g_stop="143080" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="405" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143081" i_stop="143159" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143160" g_stop="143223" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="469" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E249105" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142380" e_stop="142643"/>
          <exon e_start="142738" e_stop="142836"/>
          <exon e_start="143039" e_stop="143080"/>
          <exon e_start="143160" e_stop="143223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATATGGCAAATTCAGCCGCCACCATGGCAGGTGAAGGAACTGCCAACGCCAATCAGAGGAAATTACCCAGATTTTTGTGCCTTCATGGGTTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAATTGAAGTGGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATATTTGCCCCTCCTTATTATGAATGGTACCAGTTCAATAAGGTCGCGTTGTACGCCTAATTAATTCTTGCTAATTTTCAAATAAAAAAGGATAAAAATTATTTTATTTTATAACTGTTGTTGTTTTGAAATACAGGAATTGAATGAGTATGAGAATTTTGATAACTGTCTTGATTATATACAAGAGTGTATGATTAAGCACGGACCTTTCGATGGTCTTCTTGGTTTCTCCCAGGTATGATTTAATTATTTTAGTTGGATGCTTGGATATAAATTTGAAAAAATAAATAAATTAGTATTGATTCAATTCGATATTTTTTTATTTTCTCTTGCTTTTCTTCTTGATTCTGAAACTTTTTTGAGTCGACTCTTTTCTCTTTCTTTGCACGATCTGATACTGAGTAGTGAGTATTCTCTGTTTTGTTGATACGATTCAGGGGGCAATTCTTTCTGGAGCATTGCGTGGATTGCAGGATAAGGTACACACTAGCCCTTTTTAACGACAATCTTATTCCTCTTTTTACTTATCCATGGTTATTTTTGGTGTGATAATGGCAGGGAGTGGGACTTACTAAGGTTCGCAAAATTAAATATCTGATCATAATTGGAGGTGCGAAAATGC</genome_strand>
        <mrna_strand>ATGAATATGGCAAATTCAGCCGCCACCATGGCAGGTGAAGGAACTGCCAACGCCAGTCAGAGGAAATTACCCAGATTTTTGTGCCTTCATGGGTTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCGAGGCAAATCTGAAGTTGAAGGCATATTTGCCCCTCCTTATTATGAATGGTACCAGTTCAATAAG..............................................................................................GAATTGAATGAGTATGAGAATTTTGATAACTGTCTTGATTATATACAAGAGTGTATGATTAAGCACGGACCTTTCGATGGTCTTCTTGGTTTCTCCCAG..........................................................................................................................................................................................................GGGGCAATTCTTTCTGGAGCATTGCGTGGATTGCAGGATAAG...............................................................................GGAGTGGGACTTACTAAGGTTCGCAAAATTAAATATCTGATCATAATTGGAGGTGCGAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552729" ref_strand="+" ref_description="SGN-E552729 [cTSB-4-N2]">
      <seq>gttgtttcttagcacctgactgttgaatttattattgttatttttagaagaaatgtgagatgggtaataaatgccaaatatgcatggaccactttatggggaatgatcagcttgatagtgaaggaagacccataaatgttgtgtggaacaagtacaaaaatgcaggacccctcctctctcttatcctccattacctttccagctgatgatgaatggcccttatttctctttgtatctcgaggagcctgttctatacatggatggatagtacagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="159243" stop="158367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158943" g_stop="158672" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="287"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E552729" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158943" e_stop="158672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTCTTAGCACCTGACTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGTAATAAATGCCAAATATGCATGGACCACTTTATGGGGAATGATCAGCTTGATAGTGAAGGAAGACCCATAAATGTTGTGTGGAACAAGTACAAAAATGCAGGACCCCTCCTCTCTCTTATCCTCCATTACCTTTCCAGCTGATGATGAATGGCCCTTATTTCTCTTTGTATCTCGAGGAGCCTGTTCTATACATGGATGGATAGTACA</genome_strand>
        <mrna_strand>GTTGTTTCTTAGCACCTGACTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGTAATAAATGCCAAATATGCATGGACCACTTTATGGGGAATGATCAGCTTGATAGTGAAGGAAGACCCATAAATGTTGTGTGGAACAAGTACAAAAATGCAGGACCCCTCCTCTCTCTTATCCTCCATTACCTTTCCAGCTGATGATGAATGGCCCTTATTTCTCTTTGTATCTCGAGGAGCCTGTTCTATACATGGATGGATAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556239" ref_strand="+" ref_description="SGN-E556239 [cTSD-2-N2]">
      <seq>gttgtttcttagcacctgactgttgaatttattattgttatttttagaagaaatgtgagatgggtaataaatgccaaatatgcatggaccactttatggggaatgatcagcttgatagtgaaggaagacccataaatgttgtgtggaacaagtacaaaaatgcaggacccctcctctctcttatcctccattacctttccagctgatgatgaatggcccttatttctctttgtatctcgaggagcctgttctatacatggatggatagtacagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="159243" stop="158367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158943" g_stop="158672" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="287"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E556239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158943" e_stop="158672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTCTTAGCACCTGACTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGTAATAAATGCCAAATATGCATGGACCACTTTATGGGGAATGATCAGCTTGATAGTGAAGGAAGACCCATAAATGTTGTGTGGAACAAGTACAAAAATGCAGGACCCCTCCTCTCTCTTATCCTCCATTACCTTTCCAGCTGATGATGAATGGCCCTTATTTCTCTTTGTATCTCGAGGAGCCTGTTCTATACATGGATGGATAGTACA</genome_strand>
        <mrna_strand>GTTGTTTCTTAGCACCTGACTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGTAATAAATGCCAAATATGCATGGACCACTTTATGGGGAATGATCAGCTTGATAGTGAAGGAAGACCCATAAATGTTGTGTGGAACAAGTACAAAAATGCAGGACCCCTCCTCTCTCTTATCCTCCATTACCTTTCCAGCTGATGATGAATGGCCCTTATTTCTCTTTGTATCTCGAGGAGCCTGTTCTATACATGGATGGATAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326409" ref_strand="+" ref_description="SGN-E326409 [cTOC-14-A18]">
      <seq>gggaaatctgttgcaaatttccttgtagagaaaacgaatggtgatccacttgcaaaagcagcgagccaatgtgtaatgtattcaatgctggtctccctggatgtcattgtatatggttccgtacagagattgtttttttccagcaaggaaaatctagaagacaaaacgttgttgtatcagtaatcttttctattcttcatattcatggagccttcaattagcaagtggagtcaatgctagtaagggtagatgttccaaactcaaaaggcttttggatcaaattgcagctgaatgaaatgtttttgcagaatcaacacgtgcatgctgggtcaagtagtatcttttcataccttgttattttttttttgtttcattgttagtttagagttggaagttcttttttatttttagttggtggatagcctaatggtcagtcagaagaatctcctccatctcgctttctagaaaaatattggttctttccaggatgtgttgtttcttagcacctgactgttgaatttattattgttatttttagaagaaatgtgagatgggtaataaatgccaaatatgcatggaccactttatggggaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="159734" stop="158538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159434" g_stop="158838" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E326409" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159434" e_stop="158838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAATCTGTTGCAAATTTCCTTGTAGAGAAAACGAATGGTGATCCTCTTGCAAAAGCAGTGAGCCAATGTGTAATGTATTCAATGCTGGTCTCCATGGATGTCATTGTATATGGTTCCGTACAGAGATTGTTTTTTTCCAGCAAGGAAAATCTAGAAGACAAAACGTTGTTGTATCAGTAATCTTTTCTATTCTTCATATTCATGGAGCCTTCAATTAGCAAGTGGAGTCAATGCTAGTAAGGGTAGATGTTCCAAACTCAAAAGGCTTTTGGATCAAATTGCAGCTGAATGAGATGTTTTTGCAGAATCAACACGTGCATGCTGGGTCAAGTAGTATCTTTTCATACCTTGTTATTTTTTTTTTGTTTCATTGTTAGTTTAGAGTTGGAAGTTCTTTTTTATTTTTAGTTGGTGGATAGCCTAATGGTCAGTCAGAAGAATCTCCTCCATCTCGCTTTCTAGAAAAATATTGGTTCTTTCCAGGATGTGTTGTTTCTTAGCACCTGACTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGTAATAAATGCCAAATATGCATGGACCACTTTATGGGGAATGA</genome_strand>
        <mrna_strand>GGGAAATCTGTTGCAAATTTCCTTGTAGAGAAAACGAATGGTGATCCACTTGCAAAAGCAGCGAGCCAATGTGTAATGTATTCAATGCTGGTCTCCCTGGATGTCATTGTATATGGTTCCGTACAGAGATTGTTTTTTTCCAGCAAGGAAAATCTAGAAGACAAAACGTTGTTGTATCAGTAATCTTTTCTATTCTTCATATTCATGGAGCCTTCAATTAGCAAGTGGAGTCAATGCTAGTAAGGGTAGATGTTCCAAACTCAAAAGGCTTTTGGATCAAATTGCAGCTGAATGAAATGTTTTTGCAGAATCAACACGTGCATGCTGGGTCAAGTAGTATCTTTTCATACCTTGTTATTTTTTTTTTGTTTCATTGTTAGTTTAGAGTTGGAAGTTCTTTTTTATTTTTAGTTGGTGGATAGCCTAATGGTCAGTCAGAAGAATCTCCTCCATCTCGCTTTCTAGAAAAATATTGGTTCTTTCCAGGATGTGTTGTTTCTTAGCACCTGACTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGTAATAAATGCCAAATATGCATGGACCACTTTATGGGGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326289" ref_strand="+" ref_description="SGN-E326289 [cTOC-14-A6]">
      <seq>gggaaatctgttgcaaatttccttgtagagaaaacgaatggtgatccacttgcaaaagcagcgagccaatgtgtaatgtattcaatgctggtctccctggatgtcattgtatatggttccgtacagagattgtttttttccagcaaggaaaatctagaagacaaaacgttgttgtatcagtaatcttttctattcttcatattcatggagccttcaattagcaagtggagtcaatgctagtaagggtagatgttccaaactcaaaaggcttttggatcaaattgcagctgaatgagatgtttttgcagaatcaacacgtgcatgctgggtcaagtagtatcttttcataccttgttattttttttttgtttcattgttagtttagagttggaagttcttttttatttttagttggtggatagcctaatggtcagtcagaagaatctcctccatctcgctttctagaaaaatattggttctttccaggatgtgttgtttcttagcaccctgctgttgaatttattattgttatttttagaagaaatgtgagatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="159734" stop="158579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159434" g_stop="158879" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E326289" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159434" e_stop="158879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAATCTGTTGCAAATTTCCTTGTAGAGAAAACGAATGGTGATCCTCTTGCAAAAGCAGTGAGCCAATGTGTAATGTATTCAATGCTGGTCTCCATGGATGTCATTGTATATGGTTCCGTACAGAGATTGTTTTTTTCCAGCAAGGAAAATCTAGAAGACAAAACGTTGTTGTATCAGTAATCTTTTCTATTCTTCATATTCATGGAGCCTTCAATTAGCAAGTGGAGTCAATGCTAGTAAGGGTAGATGTTCCAAACTCAAAAGGCTTTTGGATCAAATTGCAGCTGAATGAGATGTTTTTGCAGAATCAACACGTGCATGCTGGGTCAAGTAGTATCTTTTCATACCTTGTTATTTTTTTTTTGTTTCATTGTTAGTTTAGAGTTGGAAGTTCTTTTTTATTTTTAGTTGGTGGATAGCCTAATGGTCAGTCAGAAGAATCTCCTCCATCTCGCTTTCTAGAAAAATATTGGTTCTTTCCAGGATGTGTTGTTTCTTAGCACCTGACTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGT</genome_strand>
        <mrna_strand>GGGAAATCTGTTGCAAATTTCCTTGTAGAGAAAACGAATGGTGATCCACTTGCAAAAGCAGCGAGCCAATGTGTAATGTATTCAATGCTGGTCTCCCTGGATGTCATTGTATATGGTTCCGTACAGAGATTGTTTTTTTCCAGCAAGGAAAATCTAGAAGACAAAACGTTGTTGTATCAGTAATCTTTTCTATTCTTCATATTCATGGAGCCTTCAATTAGCAAGTGGAGTCAATGCTAGTAAGGGTAGATGTTCCAAACTCAAAAGGCTTTTGGATCAAATTGCAGCTGAATGAGATGTTTTTGCAGAATCAACACGTGCATGCTGGGTCAAGTAGTATCTTTTCATACCTTGTTATTTTTTTTTTGTTTCATTGTTAGTTTAGAGTTGGAAGTTCTTTTTTATTTTTAGTTGGTGGATAGCCTAATGGTCAGTCAGAAGAATCTCCTCCATCTCGCTTTCTAGAAAAATATTGGTTCTTTCCAGGATGTGTTGTTTCTTAGCACCCTGCTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315563" ref_strand="+" ref_description="SGN-E315563 [cTOA-22-C20]">
      <seq>taagttgcagaagttagagatcagggattgcccgtttggagatttgtctttgcgttctggtttacaccactattacaacatgaggttcctttggctatcatcttgtagagtaactctacaaggttgtcaggagattgctcgccaattgccccgtctagttgtggaagtcattagtggtgatgatgaggaagggagtgagactaatgagcatgtcaataccttgtacatgtaccgatctcttgatggaccgagggctgatgtaccctcatttgtccaaatactgtgaccgacctttatagaagataggaactttctgcagtcaattgattggtacctttgagaaatgatttaactattttcttgggaagagatgctctcgggaaatctgttgcaaatttccttgtagagaaaacgaatggtgatccacttgcaaaagcagcgagccaatgtgtaatgtattcaatgctggtctccctggatgtcattgtatatggttccgtacagagattgtttttttccagcaaggaaaatctagaagacaaaacgttgttgtatcagtaatcttttctattcttcatattcatggagccttcaattagcaagtggagtcaatgctagtaagggtagatgttccaaactcaaaaggcttttggatcaaattgcagctgaatgagatgtttttgcagaacaacacgtgcatgctggggtcagtagtatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160112" stop="158790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159812" g_stop="159090" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E315563" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159812" e_stop="159090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAGTGGTGATGATGAGGAAGGGAGTGAGACTAATGAGCATGTCAATACCTTGTACATGTACCGATCTCTTGATGGACCGAGGGCTGATGTACCCTCATTTGTCCAAATACTGTGACCGACCTTTATAGAAGATAGGAACTTTCTGCAGTCAATTGATTGGTACCTTTGAGAAATGATTTAACTATTTTCTTGGGAAGAGATGCTCTCGGGAAATCTGTTGCAAATTTCCTTGTAGAGAAAACGAATGGTGATCCTCTTGCAAAAGCAGTGAGCCAATGTGTAATGTATTCAATGCTGGTCTCCATGGATGTCATTGTATATGGTTCCGTACAGAGATTGTTTTTTTCCAGCAAGGAAAATCTAGAAGACAAAACGTTGTTGTATCAGTAATCTTTTCTATTCTTCATATTCATGGAGCCTTCAATTAGCAAGTGGAGTCAATGCTAGTAAGGGTAGATGTTCCAAACTCAAAAGGCTTTTGGATCAAATTGCAGCTGAATGAGATGTTTTTGCAGAATCAACACGTGCATGCTGGGTCAAGTAGTATCTTTT</genome_strand>
        <mrna_strand>TAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAGTGGTGATGATGAGGAAGGGAGTGAGACTAATGAGCATGTCAATACCTTGTACATGTACCGATCTCTTGATGGACCGAGGGCTGATGTACCCTCATTTGTCCAAATACTGTGACCGACCTTTATAGAAGATAGGAACTTTCTGCAGTCAATTGATTGGTACCTTTGAGAAATGATTTAACTATTTTCTTGGGAAGAGATGCTCTCGGGAAATCTGTTGCAAATTTCCTTGTAGAGAAAACGAATGGTGATCCACTTGCAAAAGCAGCGAGCCAATGTGTAATGTATTCAATGCTGGTCTCCCTGGATGTCATTGTATATGGTTCCGTACAGAGATTGTTTTTTTCCAGCAAGGAAAATCTAGAAGACAAAACGTTGTTGTATCAGTAATCTTTTCTATTCTTCATATTCATGGAGCCTTCAATTAGCAAGTGGAGTCAATGCTAGTAAGGGTAGATGTTCCAAACTCAAAAGGCTTTTGGATCAAATTGCAGCTGAATGAGATGTTTTTGCAGAA-CAACACGTGCATGCTGGGGTCAGTAGTATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329739" ref_strand="+" ref_description="SGN-E329739 [cTOD-3-C19]">
      <seq>aggaaactcaagtccatcttatatttctgccaaaaaatgacaaatgcagctgttatagctatgtcaaagaactgcccggaccttgtggtattccggctatgcattatgggtcggcacttgcctgaccatgttacaaatgaaccgatggatgaaggctttggggctattgtcaagaactgtaagaagcttactagacttgctgtatctggtttactgactgatagggctttcagttacattggacaatatggaaaactagtccgaaccttatcagttgcttttgccggaaacagtgacttggctctgaagtatgtgctcgagggctgccctaagttgcagaagttagagatcagggattgcccgtttggagatttgtctttgcgttctggtttacaccactattacaacatgaggttcctttggctatcatcttgtagagtaactctacaaggttgtcaggagattgctcgccaattgccccgtctagttgtggaagtcattantggtgatgatgaggaagggagtgagactaatgagcatgtcaataccttgtacatgtaccgatctcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160441" stop="159269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160141" g_stop="159569" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E329739" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160141" e_stop="159569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAGTGGTGATGATGAGGAAGGGAGTGAGACTAATGAGCATGTCAATACCTTGTACATGTACCGATCTCTTGAT</genome_strand>
        <mrna_strand>AGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTANTGGTGATGATGAGGAAGGGAGTGAGACTAATGAGCATGTCAATACCTTGTACATGTACCGATCTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559596" ref_strand="+" ref_description="SGN-E559596 [19118]">
      <seq>aaggacttgaggcagttgctgcaacatgtaaggatctgcgggagattcgagttttccctgtcgaagctcgggaagatgcagatgccccagtttctgaagtaggtctccttgcgatttctgagggttgcagtaaacttaagtccatcttatatttctgccaacgaatgacaaatgcggctgttatagctatgtcaaagaactgcccagaacttgtggtattccgactatgcattatgggtcggcacttgcctgaccatgttactaatgaaccaatggatgaaggctttggggctattgtcaagaactgtaagaagcttactagactcgctgtatctggtttactgactgataaggcattctgttacattggacaatatggaaaactagtcagaaccttatcagttgcttttgctggaaacagtgacttggctctgaagtatgtgctcgagggctgccctaagttgcagaagttggagatcaggaattgcccatttggagatttgtctttgcgttctggtgtacaccactattacaatatgaggttcctttggctgtcatcttgtagagtaactctacaaggttgtcaggagattgctggccaattgccccgtctagtagtggaagtgataagtggtgatgaggaagggagtgagactggtgagcatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160569" stop="159318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160269" g_stop="159599" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E559596" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160269" e_stop="159599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCCTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAGTGGTGATGATGAGGAAGGGAGTGAGACTAATGAGCATGTC</genome_strand>
        <mrna_strand>AAGGACTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTGTCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGTCTCCTTGCGATTTCTGAGGGTTGCAGTAAACTTAAGTCCATCTTATATTTCTGCCAACGAATGACAAATGCGGCTGTTATAGCTATGTCAAAGAACTGCCCAGAACTTGTGGTATTCCGACTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACTAATGAACCAATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTCGCTGTATCTGGTTTACTGACTGATAAGGCATTCTGTTACATTGGACAATATGGAAAACTAGTCAGAACCTTATCAGTTGCTTTTGCTGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTGGAGATCAGGAATTGCCCATTTGGAGATTTGTCTTTGCGTTCTGGTGTACACCACTATTACAATATGAGGTTCCTTTGGCTGTCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTGGCCAATTGCCCCGTCTAGTAGTGGAAGTGATAAGT-G-G-TGATGAGGAAGGGAGTGAGACTGGTGAGCATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235949" ref_strand="+" ref_description="SGN-E235949 [cLED-16-E11]">
      <seq>gaaactcaagttcatcttatatttctgccttattatgacaaatgcagctgttatagctatgtcaaagaactgcccggaccttgtggtattccggctatgcattatgggtcggcacttgcctgaccatgttacaaatgaaccgatggatgaaggctttggggctattgtcaagaactgtaagaagcttactagacttgctgtatctggtttactgactgatagggctttcagttacattggacaatatggaaaactagtccgaaccttatcagttgcttttgccggaaacagtgacttggctctgaagtatgtgctcgagggctgccctaagttgcagaagttagagatcagggattgcccgtttggagatttgtctttgcgttctggtttacaccactattacaacatgaggttcctttggctatcatcttgtagagtaactctacaaggttgtcaggagattgctcgccaattgccccgtctagttgtggaagtcattaatggtgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160439" stop="159328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160139" g_stop="159628" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E235949" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160139" e_stop="159628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAGTGGTGATGATG</genome_strand>
        <mrna_strand>GAAACTCAAGTTCATCTTATATTTCTGCCTTATTATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAATGGTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241466" ref_strand="+" ref_description="SGN-E241466 [cLED-28-K5]">
      <seq>gaaactcaagtccatcttatatttctgccaaaaaatgacaaatgcagctgttatagctatgtcaaagaactgcccggaccttgtggtattccggctatgcattatgggtcggcacttgcctgaccatgttacaaatgaaccgatggatgaaggctttggggctattgtcaagaactgtaagaagcttactagacttgctgtatctggtttactgactgatagggctttcagttacattggacaatatggaaaactagtccgaaccttatcagttgcttttgccggaaacagtgacttggctctgaagtatgtgctcgagggctgccctaagttgcagaagttagagatcagggattgcccgtttggagatttgtctttgcgttctggtttacaccactattacaacatgaggttcctttggctatcatcttgtagagtaactctacaaggttgtcaggagattgctcgccaattgccccgtctagttgtggaagtcattagtggtgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160439" stop="159329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160139" g_stop="159629" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E241466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160139" e_stop="159629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAGTGGTGATGAT</genome_strand>
        <mrna_strand>GAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAGTGGTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231420" ref_strand="+" ref_description="SGN-E231420 [cLED-4-C13]">
      <seq>gaaactcaagtccatcttatatttctgccaaaaaatgacaaatgcagctgttatagctatgtcaaagaactgcccggaccttgtggtattccggctatgcattatgggtcggcacttgcctgaccatgttacaaatgaaccgatggatgaaggctttggggctattgtcaagaactgtaagaagcttactagacttgctgtatctggtttactgactgatagggctttcagttacattggacaatatggaaaactagtccgaaccttatcagttgcttttgccggaaacagtgacttggctctgaagtatgtgctcgagggctgccctaagttgcagaagttagagatcagggattgcccgtttggagatttgtctttgcgttctggtttacaccactattacaacatgaggttcctttggctatcatcttgtagagtaactctacaaggttgtcaggagattgctcgccaattgccccgtctagttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160439" stop="159351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160139" g_stop="159651" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E231420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160139" e_stop="159651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGT</genome_strand>
        <mrna_strand>GAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329657" ref_strand="+" ref_description="SGN-E329657 [cTOD-3-D19]">
      <seq>aggaaactcaagtccatcttatatttctgccaaaaaatgacaaatgcagctgttatagctatgtcaaagaactgcccggaccttgtggtattccggctatgcattatgggtcggcacttgcctgaccatgttacaaatgaaccgatggatgaaggctttggggctattgtcaagaactgtaagaagcttactagacttgctgtatctggtttactgactgatagggctttcagttacattggacaatatggaaaactagtccgaaccttatcagttgcttttgccggaaacagtgacttggctctgaagtatgtgctcgagggctgccctaagttgcagaagttagagatcagggattgcccgtttggagatttgtctttgcgttctggtttacaccactattacaacatgaggttcctttggctatcatcttgtagagtaactctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160441" stop="159394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160141" g_stop="159694" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E329657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160141" e_stop="159694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTAC</genome_strand>
        <mrna_strand>AGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265586" ref_strand="+" ref_description="SGN-E265586 [cLEI-14-L16]">
      <seq>gcagttgctgcaacatgtaaggatctgcgggagattcgagttttccctatcgaagctcgggaagatgcagatgccccagtttctgaagtaggcctccttgcaatttctgagggttgcaggaaactcaagtccatcttatatttctgccaaaaaatgacaaatgcagctgttatagctatgtcaaagaactgcccggaccttgtggtattccggctatgcattatgggtcggcacttgcctgaccatgttacaaatgaaccgatggatgaaggctttggggctattgtcaagaactgtaagaagcttactagacttgctgtatctggtttactgactgatagggctttcagttacattggacaatatggaaaactagtccgaaccttatcagttgcttttgccggaaacagtgacttggctctgaagtatgtgctcgagggctgccctaagttgcagaagttagagatcagggattgcccgtttggagatttgactttgcgttctggtttacaccactattacaacatgaggttcctttggctatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160558" stop="159411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160258" g_stop="159711" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E265586" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160258" e_stop="159711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATC</genome_strand>
        <mrna_strand>GCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGACTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236229" ref_strand="+" ref_description="SGN-E236229 [cLED-20-J9]">
      <seq>gaaactcaagtccatcttatatttctgccaaaaaatgacaaatgcagctgttatagctatgtcaaagaactgcccggaccttgtggtattccggctatgcattatgggtcggcacttgcctgaccatgttacaaatgaaccgatggatgaaggctttggggctattgtcaagaactgtaagaagcttactagacttgctgtatctggtttactgactgatagggctttcagttacattggacaatatggaaaactagtccgaaccttatcagttgcttttgccggaaacagtgacttggctctgaagtatgtgctcgagggctgccctaagttgcagaagttagagatcaaggattgcccggttggagatttgtctttgcgttctggtttacaccactattacaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160439" stop="159430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160139" g_stop="159730" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E236229" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160139" e_stop="159730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGA</genome_strand>
        <mrna_strand>GAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAAGGATTGCCCGGTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265675" ref_strand="+" ref_description="SGN-E265675 [cLEI-14-J24]">
      <seq>gggcagttgctgcaacatgtaaggatctgcgggagattcgagttttccctatcgaagctcgcgaagatgcagatgccccagtttctgaagtatgcctccttgcaattactgagggttgcaggaaactcaagtccatcttatatttctgccaaaaaatgacaaatgcagctgttatagctatgtcaaagaactgcccggaccttgtggtattccggctatgcattatgggtcggcacttgcctgaccatgttacaaatgaacctatggatgaaggctttggggctattgtcaagaactgtaagaagcttactagacttgctgtatctggtttactgactgatagggctttcagttacattggacaatatggaaaactagtccgaaccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160559" stop="159571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160260" g_stop="159871" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E265675" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160260" e_stop="159871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTAT</genome_strand>
        <mrna_strand>GGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGCGAAGATGCAGATGCCCCAGTTTCTGAAGTATGCCTCCTTGCAATTACTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCTATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312830" ref_strand="+" ref_description="SGN-E312830 [cTOA-8-M15]">
      <seq>catggtctgtctctctggtttcagggaaattgctcctgaatatctgcctgcaatctatccagtttgtggcaatctgacctctcttaatttaagctatggtgccaacattaatactgaacaattcaagtctgtcatcagccgctgccataagctccaagtattgtgggtatttgattctgtatgtgacgaaggccttgaggcagttgctgcaacatgtaaggatctgcgggagattcgagttttccctatcgaagctcgggaagatgcagatgccccagtttctgaagtaggcctccttgcaatttctgagggttgcaggaaactcaagtccatcttatatttctgccaaaaaatgacaaatgcagctgttatagctatgtcaaagaactgcccggaccttgtggtattccggctatgcattatgggtcggcacttgcctgaccatgttacaaatgaaccgatggatgaaggctttggggctattgtcaagaactgtaagaagcttactagacttgctgtatctggtttactgactgatagggctttcagttacattggacaatatggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160846" stop="159586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160546" g_stop="160381" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="160380" i_stop="160292" i_length="89">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160291" g_stop="159886" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="572" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E312830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160546" e_stop="160381"/>
          <exon e_start="160291" e_stop="159886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTCTGTCTCTCTGGTTTCAGGGAAATTGCTCCTGAATATCTGCCTGCAATCTATCCAGTTTGTGGCAATCTGACCTCTCTTAATTTAAGCTATGGTGCCAACATTAATACTGAACAATTCAAGTCTGTCATCAGCCGCTGCCATAAGCTCCAAGTATTGTGGGTATGTGGTTTGAATTTTTGCTAAATGTTCTTTTAAATTAAATTGTACTCTGTAATAGGGTTATATTGAGTTCAATTTTGATGTTTCAGGTATTTGATTCTGTATGTGACGAAGGCCTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAAC</genome_strand>
        <mrna_strand>CATGGTCTGTCTCTCTGGTTTCAGGGAAATTGCTCCTGAATATCTGCCTGCAATCTATCCAGTTTGTGGCAATCTGACCTCTCTTAATTTAAGCTATGGTGCCAACATTAATACTGAACAATTCAAGTCTGTCATCAGCCGCTGCCATAAGCTCCAAGTATTGTGG.........................................................................................GTATTTGATTCTGTATGTGACGAAGGCCTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470395" ref_strand="+" ref_description="SGN-E470395 [cSTB-18-G3]">
      <seq>gctatggtgccaacattaatactgaacaattcaagtctgtcatcagccgctgccataagctccaagtattgtgggtatttgattctgtatgtgacgaaggacttgaggcagttgctgcaacatgtaaggatctgcgggagattcgagttttccctgtcgaagctcgggaagatgcagatgccccagtttctgaagtaggtctccttgcgatttctgagggttgcagtaaacttaagtccatcttatatttctgccaacgaatgacaaatgcggctgttatagctatgtcaaagaactgcccagaacttgtggtattccgactatgcattatgggtcggcacttgcctgaccatgttactaatgaaccaatggatgaaggctttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160754" stop="159680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160454" g_stop="160381" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="160380" i_stop="160292" i_length="89">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160291" g_stop="159980" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="386" r_length="312" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E470395" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160454" e_stop="160381"/>
          <exon e_start="160291" e_stop="159980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGTGCCAACATTAATACTGAACAATTCAAGTCTGTCATCAGCCGCTGCCATAAGCTCCAAGTATTGTGGGTATGTGGTTTGAATTTTTGCTAAATGTTCTTTTAAATTAAATTGTACTCTGTAATAGGGTTATATTGAGTTCAATTTTGATGTTTCAGGTATTTGATTCTGTATGTGACGAAGGCCTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGG</genome_strand>
        <mrna_strand>GCTATGGTGCCAACATTAATACTGAACAATTCAAGTCTGTCATCAGCCGCTGCCATAAGCTCCAAGTATTGTGG.........................................................................................GTATTTGATTCTGTATGTGACGAAGGACTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTGTCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGTCTCCTTGCGATTTCTGAGGGTTGCAGTAAACTTAAGTCCATCTTATATTTCTGCCAACGAATGACAAATGCGGCTGTTATAGCTATGTCAAAGAACTGCCCAGAACTTGTGGTATTCCGACTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACTAATGAACCAATGGATGAAGGCTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424069" ref_strand="+" ref_description="SGN-E424069 [STM-43-A17]">
      <seq>cagagatgtctgaagatgaggagcgtccttgtccttcagatctcaccggtggcgccactgcaaaagcaaggaactgttgctttaacgccgccgttaccggtggcggaggggggatttttaacttttcgccacacccagatcaagttcttgaaaatgtgctggaaaatgttctttgctttttaactgatcgccgtgaccgtaacgctgcatctcttgtaagcaaatcttggtatcgggctgaggctttaaccagatccgaagtgtttattggcaactgttatgctgtttcgccgacccgggttacgacccgtttcaaaagggtgacctctgtggccattaaagggaaacctaggtttgctgatttcagtttgcttcctccagattggggtgctcactttactccttgggcttctgttttgggtgattcttatcgtgggcttgagaaattgtacctcaaacgtatgtccatatctgatgatgatctangtttgttggcgcgttgattctgtatgtgacgaaggacttgaggcagttgctgcaacatgtaaggatctgcgggagattcgagttttccctgtcgaagctcgggaagatgcagatgccccagtttctgaagtaggtctccttgcgatttctgaagggtgcagtaaacttaagtccatcttatatttctgccaacgaatgacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="162142" stop="159796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161842" g_stop="161345" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161344" i_stop="160292" i_length="1053">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160291" g_stop="160096" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="691" r_length="193" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E424069" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161842" e_stop="161345"/>
          <exon e_start="160291" e_stop="160096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGTGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAGGTTAGTATTGTTTTGTTGGGATATAGATCTATCTATGTGGTAACCCTTTTGGTAAAAAAGTTCAGATTTTTAATTGTTAGAAGCTGAATTCTTTTTACTGTAATGGGAATTTTACAGCTTAAACTAGTGTAGATATATTCTGTTATTTGAATTGGTGCTTCATGTGTGCTGGTGTTTGAATTAGTTGTATGATTGAAGTTGTTCTTTTAACTGTTCTATTTCTGCATTTGAAACTTAATGATACTTACTTCCTGAGGACACTAGCATTGAAGTTGTAATAATTAGTGACTTGTTGTATTGGATTTGTGAGTATGCAAGCTGTGAAATATGGTCTGGTAGTGTGATTTTCTTGTACATAATAGAAGGTTTTACTGCAGGCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTATAGACTTTGAGGCATTGGAGAAGCTAGTAATCAGGTCACCTAGTTTGAAGAGACTAAGGTTGAATCGGTTTGTTTCTATTACTCAACTGTATCGGTTGATGATTCGAGCTCCACAGCTTACCAATCTGGGAACAGGCTCTTTTGGCGCCTCAACGGTCACTGATGAACCAGATCCTGATTATGCTTCAGCATTTGCTGCCTGCAAATCCATGGTCTGTCTCTCTGGTTTCAGGGAAATTGCTCCTGAATATCTGCCTGCAATCTATCCAGTTTGTGGCAATCTGACCTCTCTTAATTTAAGCTATGGTGCCAACATTAATACTGAACAATTCAAGTCTGTCATCAGCCGCTGCCATAAGCTCCAAGTATTGTGGGTATGTGGTTTGAATTTTTGCTAAATGTTCTTTTAAATTAAATTGTACTCTGTAATAGGGTTATATTGAGTTCAATTTTGATGTTTCAGGTATTTGATTCTGTATGTGACGAAGGCCTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATG</genome_strand>
        <mrna_strand>CAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGCGCCACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGCGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTTTTAACTGATCGCCGTGACCGTAACGCTGCATCTCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAAAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCTGTTTTGGGTGATTCTTATCGTGGGCTTGAGAAATTGTACCTCAAACGTATGTCCATATCTGATGATGATCTANGTTTGTTGGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TTGATTCTGTATGTGACGAAGGACTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTGTCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGTCTCCTTGCGATTTCTGAAGGGTGCAGTAAACTTAAGTCCATCTTATATTTCTGCCAACGAATGACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451636" ref_strand="+" ref_description="SGN-E451636 [cSTS-13-F4]">
      <seq>acgaaggcagagatgtctgaaagacgaggagcgtccttgtccttcagctctcaccggtggcgccactgcaaaagcaaggaactgttgctttaacgccgccgttaccggtggcggaggggggatttttaaacttttcgccacacccagatcaagttcttgaaaatgtgctggaaaatgttctttgctttttaactgatcgccgtgaccgtaacgctgcatctcttgtaagcaaatcttggtatcgggctgaggctttaaccagatccgaagtgtttattggcaactgttatgctgtttcgccgacccgggttacgaacccgtttcaaaagggtgacctctgtggccattaaagggaaacctaggtttgctgatttcagtttgcttcctccagattggggtgctcactttactccttgggcttctgttttgggtgattcttatcgtgggcttgagaaattgtacctcaaacgtatgtccatatctgatgatgatctaggtttgttggcgcgttgattctgtatgtgacgaaggacttgaggcagttgctgcaacatgtaaggatctgcgggagattcgagttttccctgtcgaagctcgggaagatgcagatgccccagtttctgaagtaggtctccttgcgatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="162142" stop="159851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161849" g_stop="161345" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161344" i_stop="160292" i_length="1053">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160291" g_stop="160151" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="646" r_length="138" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E451636" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161849" e_stop="161345"/>
          <exon e_start="160291" e_stop="160151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTTCAGAGATGTCTG-AAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTT-AACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACG-ACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGTGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAGGTTAGTATTGTTTTGTTGGGATATAGATCTATCTATGTGGTAACCCTTTTGGTAAAAAAGTTCAGATTTTTAATTGTTAGAAGCTGAATTCTTTTTACTGTAATGGGAATTTTACAGCTTAAACTAGTGTAGATATATTCTGTTATTTGAATTGGTGCTTCATGTGTGCTGGTGTTTGAATTAGTTGTATGATTGAAGTTGTTCTTTTAACTGTTCTATTTCTGCATTTGAAACTTAATGATACTTACTTCCTGAGGACACTAGCATTGAAGTTGTAATAATTAGTGACTTGTTGTATTGGATTTGTGAGTATGCAAGCTGTGAAATATGGTCTGGTAGTGTGATTTTCTTGTACATAATAGAAGGTTTTACTGCAGGCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTATAGACTTTGAGGCATTGGAGAAGCTAGTAATCAGGTCACCTAGTTTGAAGAGACTAAGGTTGAATCGGTTTGTTTCTATTACTCAACTGTATCGGTTGATGATTCGAGCTCCACAGCTTACCAATCTGGGAACAGGCTCTTTTGGCGCCTCAACGGTCACTGATGAACCAGATCCTGATTATGCTTCAGCATTTGCTGCCTGCAAATCCATGGTCTGTCTCTCTGGTTTCAGGGAAATTGCTCCTGAATATCTGCCTGCAATCTATCCAGTTTGTGGCAATCTGACCTCTCTTAATTTAAGCTATGGTGCCAACATTAATACTGAACAATTCAAGTCTGTCATCAGCCGCTGCCATAAGCTCCAAGTATTGTGGGTATGTGGTTTGAATTTTTGCTAAATGTTCTTTTAAATTAAATTGTACTCTGTAATAGGGTTATATTGAGTTCAATTTTGATGTTTCAGGTATTTGATTCTGTATGTGACGAAGGCCTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCT</genome_strand>
        <mrna_strand>ACGAAGGCAGAGATGTCTGAAAGACGAGGAGCGTCCTTGTCCTTCAGCTCTCACCGGTGGCGCCACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGCGGAGGGGGGATTTTTAAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTTTTAACTGATCGCCGTGACCGTAACGCTGCATCTCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGAACCCGTTTCAAAAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCTGTTTTGGGTGATTCTTATCGTGGGCTTGAGAAATTGTACCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTGTTGGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TTGATTCTGTATGTGACGAAGGACTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTGTCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGTCTCCTTGCGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454452" ref_strand="+" ref_description="SGN-E454452 [cSTS-23-I14]">
      <seq>tctttgctttttaactgatcgccgtgaccgtaacgctgcatctcttgtaagcaaatcttggtatcgggctgaggctttaaccagatccgaagtgtttattggcaactgttatgctgtttcgccgacccgggttacgacccgtttcaaaagggtgacctctgtggccattaaagggaaacctaggtttgctgatttcagtttgcttcctccagattggggtgctcactttactccttgggcttctgttttgggtgattcttatcgtgggcttgagaaattgtacctcaaacgtatgtccatatctgatgatgatctaggtttgttggcgcgttgtttccccagtttcaaagagcttgttcttgtatgctgtgacggttttgggactagtggacttgctattgtagctcgtgattgcaggcaaattagagtgcttgatctgattgagtctgaggtatccgacgatgaagtggactggatttcctacttccctgagaacaaaacgtgtttggagtctttgacctttgattgtgttgaatgccctattgactttgaggcattggagaagctagtaatcaggtcacctagtttgaagagactaangttgaatcggtttgtttctattactcagctgtaccgtttgatgattcgagctncacagcttaccaatctaggaacaggctcttttggcgcctcacggtcattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="161973" stop="160291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161673" g_stop="161257" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161256" i_stop="160880" i_length="377">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160879" g_stop="160591" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="705" r_length="288" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E454452" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161673" e_stop="161257"/>
          <exon e_start="160879" e_stop="160591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGTGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAGGTTAGTATTGTTTTGTTGGGATATAGATCTATCTATGTGGTAACCCTTTTGGTAAAAAAGTTCAGATTTTTAATTGTTAGAAGCTGAATTCTTTTTACTGTAATGGGAATTTTACAGCTTAAACTAGTGTAGATATATTCTGTTATTTGAATTGGTGCTTCATGTGTGCTGGTGTTTGAATTAGTTGTATGATTGAAGTTGTTCTTTTAACTGTTCTATTTCTGCATTTGAAACTTAATGATACTTACTTCCTGAGGACACTAGCATTGAAGTTGTAATAATTAGTGACTTGTTGTATTGGATTTGTGAGTATGCAAGCTGTGAAATATGGTCTGGTAGTGTGATTTTCTTGTACATAATAGAAGGTTTTACTGCAGGCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTATAGACTTTGAGGCATTGGAGAAGCTAGTAATCAGGTCACCTAGTTTGAAGAGACTAAGGTTGAATCGGTTTGTTTCTATTACTCAACTGTATCGGTTGATGATTCGAGCTCCACAGCTTACCAATCTGGGAACAGGCTCTTTTGGCGCCTCAACGGTCACTGAT</genome_strand>
        <mrna_strand>TCTTTGCTTTTTAACTGATCGCCGTGACCGTAACGCTGCATCTCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAAAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCTGTTTTGGGTGATTCTTATCGTGGGCTTGAGAAATTGTACCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTGTTGGCGCGTTGTTTCCCCAGTTTCAAAGAGCTTGTTCTTGTATGCTGTGACGGTTTTGGGACTAGTGGACTTGCTATTGTAGCTCGTGATTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................GCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCCGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTATTGACTTTGAGGCATTGGAGAAGCTAGTAATCAGGTCACCTAGTTTGAAGAGACTAANGTTGAATCGGTTTGTTTCTATTACTCAGCTGTACCGTTTGATGATTCGAGCTNCACAGCTTACCAATCTAGGAACAGGCTCTTTTGGCGCCTC-ACGGTCATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266413" ref_strand="+" ref_description="SGN-E266413 [cLEI-3-F15]">
      <seq>gtttgctgttttcagtttgcttcctccagattggggggcttactttactccttgggcttcggttttgggtgattcttatcgtggccttgagaaattgtatctcaaacgtatgtccatatctgatgatgatctaggtttattggcgcgttgtttccccaatttcaaagagcttgttcttgtatgctgtgaaggttttgggactagtggacttgctattgtagcccgtgattgcaggcaaattagagtgcttgatctgattgagtctgaggtatctgacgatgaagtggactggatttcctacttccctgagaacaaaacgtgtttggagtctttgacctttgattgtgttgaatgccctatagactttgaggcattggagaagctagtaatcaggtcacctagtttgaagagactaaggttgaatcggtttgtttctattactcaactgtatcggttgatgattcgagctccacagcttaccaatctgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="161790" stop="160323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161490" g_stop="161257" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161256" i_stop="160880" i_length="377">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160879" g_stop="160623" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="491" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E266413" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161490" e_stop="161257"/>
          <exon e_start="160879" e_stop="160623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGTGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAGGTTAGTATTGTTTTGTTGGGATATAGATCTATCTATGTGGTAACCCTTTTGGTAAAAAAGTTCAGATTTTTAATTGTTAGAAGCTGAATTCTTTTTACTGTAATGGGAATTTTACAGCTTAAACTAGTGTAGATATATTCTGTTATTTGAATTGGTGCTTCATGTGTGCTGGTGTTTGAATTAGTTGTATGATTGAAGTTGTTCTTTTAACTGTTCTATTTCTGCATTTGAAACTTAATGATACTTACTTCCTGAGGACACTAGCATTGAAGTTGTAATAATTAGTGACTTGTTGTATTGGATTTGTGAGTATGCAAGCTGTGAAATATGGTCTGGTAGTGTGATTTTCTTGTACATAATAGAAGGTTTTACTGCAGGCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTATAGACTTTGAGGCATTGGAGAAGCTAGTAATCAGGTCACCTAGTTTGAAGAGACTAAGGTTGAATCGGTTTGTTTCTATTACTCAACTGTATCGGTTGATGATTCGAGCTCCACAGCTTACCAATCTGGGAA</genome_strand>
        <mrna_strand>GTTTGCTGTTTTCAGTTTGCTTCCTCCAGATTGGGGGGCTTACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGTGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................GCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTATAGACTTTGAGGCATTGGAGAAGCTAGTAATCAGGTCACCTAGTTTGAAGAGACTAAGGTTGAATCGGTTTGTTTCTATTACTCAACTGTATCGGTTGATGATTCGAGCTCCACAGCTTACCAATCTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266622" ref_strand="+" ref_description="SGN-E266622 [cLEI-5-K5]">
      <seq>tttgctgatttcagtttgcttcctccagattggggtgctcactttactccttgggcttcggttttgggtgattcttatcgtggccttgagaaattgtatctcaaacgtatgtccatatctgatgatgatctaggtttattggcgcgttgtttccccaatttcaaagagcttgttcttgtatgctgtgaaggttttgggactagtggacttgctattgtagcccgtgattgcaggcaaattagagtgcttgatctgattgagtctgaggtatctgacgatgaagtggactggatttcctacttccctgagaacaaaacgtgtttggagtctttgacctttgattgtgttgaatgccctatagactttgaggcattggagaagctagtaatcaggtcacctagtttgaagagactaaggttgaatcggtttgtttctattactcaactgtatcggttgatgattcgagctccacagcttaccaatctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="161789" stop="160324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161489" g_stop="161257" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161256" i_stop="160880" i_length="377">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160879" g_stop="160624" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="489" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E266622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161489" e_stop="161257"/>
          <exon e_start="160879" e_stop="160624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGTGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAGGTTAGTATTGTTTTGTTGGGATATAGATCTATCTATGTGGTAACCCTTTTGGTAAAAAAGTTCAGATTTTTAATTGTTAGAAGCTGAATTCTTTTTACTGTAATGGGAATTTTACAGCTTAAACTAGTGTAGATATATTCTGTTATTTGAATTGGTGCTTCATGTGTGCTGGTGTTTGAATTAGTTGTATGATTGAAGTTGTTCTTTTAACTGTTCTATTTCTGCATTTGAAACTTAATGATACTTACTTCCTGAGGACACTAGCATTGAAGTTGTAATAATTAGTGACTTGTTGTATTGGATTTGTGAGTATGCAAGCTGTGAAATATGGTCTGGTAGTGTGATTTTCTTGTACATAATAGAAGGTTTTACTGCAGGCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTATAGACTTTGAGGCATTGGAGAAGCTAGTAATCAGGTCACCTAGTTTGAAGAGACTAAGGTTGAATCGGTTTGTTTCTATTACTCAACTGTATCGGTTGATGATTCGAGCTCCACAGCTTACCAATCTGGGA</genome_strand>
        <mrna_strand>TTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGTGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................GCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTATAGACTTTGAGGCATTGGAGAAGCTAGTAATCAGGTCACCTAGTTTGAAGAGACTAAGGTTGAATCGGTTTGTTTCTATTACTCAACTGTATCGGTTGATGATTCGAGCTCCACAGCTTACCAATCTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595645" ref_strand="+" ref_description="SGN-E595645 [38922]">
      <seq>aaccttagtctcttcaaactagtgacctgattactagcttctccaatgcctcaaagtcaatagggcattcaacacaatcaaaggtcaaagactccaaacacgttttgttctcagggaagtaggaaatccagtccacttcatcgtcggatacctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160394" stop="161150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160694" g_stop="160850" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E595645" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160694" e_stop="160850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTAGTCTCTTCAAACTAGGTGACCTGATTACTAGCTTCTCCAATGCCTCAAAGTCTATAGGGCATTCAACACAATCAAAGGTCAAAGACTCCAAACACGTTTTGTTCTCAGGGAAGTAGGAAATCCAGTCCACTTCATCGTCAGATACCTCAG</genome_strand>
        <mrna_strand>AACCTTAGTCTCTTCAAACTA-GTGACCTGATTACTAGCTTCTCCAATGCCTCAAAGTCAATAGGGCATTCAACACAATCAAAGGTCAAAGACTCCAAACACGTTTTGTTCTCAGGGAAGTAGGAAATCCAGTCCACTTCATCGTCGGATACCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306799" ref_strand="+" ref_description="SGN-E306799 [cLEY-11-O9]">
      <seq>cccgggttacgacccgtttcaagagggtgacctctgtggccattaaagggaaacctatgtttgctgatttcagtttgcttcctccagattggggtgctcactttactccttgggcttcggttttgggtgattcttatcgtggccttgagaaattgtatctcaaacgtatgtccatatctgatgatgatctaggtttattggcgcgttgtttccccaatttcaaagagcttgttcttgtatgctgcgaaggttttgggactagtggacttgctattgtagcccgtgattgcaggcaaattagagtgcttgatctgattgagtctgaggtatctgacgatgaagtggactggatttcctacttccctgagaacaaaacgtgtttggagtctttgacctttgattgtgttgaatgccctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="161848" stop="160454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161548" g_stop="161257" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161256" i_stop="160880" i_length="377">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160879" g_stop="160754" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="418" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E306799" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161548" e_stop="161257"/>
          <exon e_start="160879" e_stop="160754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGTGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAGGTTAGTATTGTTTTGTTGGGATATAGATCTATCTATGTGGTAACCCTTTTGGTAAAAAAGTTCAGATTTTTAATTGTTAGAAGCTGAATTCTTTTTACTGTAATGGGAATTTTACAGCTTAAACTAGTGTAGATATATTCTGTTATTTGAATTGGTGCTTCATGTGTGCTGGTGTTTGAATTAGTTGTATGATTGAAGTTGTTCTTTTAACTGTTCTATTTCTGCATTTGAAACTTAATGATACTTACTTCCTGAGGACACTAGCATTGAAGTTGTAATAATTAGTGACTTGTTGTATTGGATTTGTGAGTATGCAAGCTGTGAAATATGGTCTGGTAGTGTGATTTTCTTGTACATAATAGAAGGTTTTACTGCAGGCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTAT</genome_strand>
        <mrna_strand>CCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTATGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGCGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................GCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442204" ref_strand="+" ref_description="SGN-E442204 [cSTA-32-G8]">
      <seq>cgagggagcgtccttgtccttcagatctcaccggtggcgccactgcaaaagcaaggaactgttgctttaacgccgccgttaccggtggcggaggggggatttttaacttttcgccacacccagatcaagttcttgaaaatgtgctggaaaatgttctttgcttcttaactgatcgccgtgaccgtaacgctgcatctcttgtaagcaaatcttggtatcgggctgaggctttaaccagatccgaagtgtttattggcaactgttatgctgtttcgccgacccgggttacgacccgtttcaaaagggtgacctctgtggccattaaagggaaacctaggtttgctgatttcagtttgcttcctccagattggggtgctcactttactccttgggcttctgttttgggtgattcttatcgtgggcttgagaaattgtacctcaaacgtatgtccatatctgatgatgatctaggtttgttggcgcgttgtttccccagtttcaaagagcttgttcttgtatgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="162125" stop="161004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161829" g_stop="161304" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E442204" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161829" e_stop="161304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGT</genome_strand>
        <mrna_strand>CGA-G-GGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGCGCCACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGCGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCTCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAAAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCTGTTTTGGGTGATTCTTATCGTGGGCTTGAGAAATTGTACCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTGTTGGCGCGTTGTTTCCCCAGTTTCAAAGAGCTTGTTCTTGTATGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316571" ref_strand="+" ref_description="SGN-E316571 [cTOA-25-N19]">
      <seq>aagcttaaaatcttgattagtgataaagaactgttttttttttcatcttcttcaactcttcctggatctgaaaaaaagaattttattacttcaagagggggggtttatttaatatttttgtttataaataaattattcaattcagatttcagagaaacacttcccattaatctagaccctcttttacccccaccccacccaccctacccaccccccacatgagtggtagtgacaatccttcagagatgtctgaagatgaggagcgtccttgtccttcagatctcaccggtggtgttactgcaaaagcaaggaactgttgctttaacgccgccgttaccggtggtggaggggggatttttaacttttcgccacacccagatcaagttcttgaaaatgtgctggaaaatgttctttgcttcttaactgatcgccgtgaccgtaacgctgcatcccttgtaagcaaatcttggtatcgggctgaggctttaaccagatccgaagtgtttattggcaactgttatgctgtttcgccgacccgggttacgacccgtttcaagagggtgacctctgtggccattaaagggaaacctaggtttgctgatttcagtttgcttcctccagattggggtgctcactttactccttgggcttcggttttgggtgattcttatcgtggccttgagaaatgtatctcaacgtatgtccatatctgatgatgatctangtttattggcgcgttgtttccccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="162382" stop="161030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162082" g_stop="161330" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E316571" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162082" e_stop="161330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTAAAATCTTGATTAGTGATAAAGAACTGTTTTTTTTTTTCATCTTCTTCAACTCTTCCTGGATCTGAAAAAAAGATATTTTATTACTTCAAGA--GGGGGTTTATTTAATATTTTTGTTTATAAATAAATTATTCAATTCAGATTTCAGAGAAACACTTCCCATTAATCTAGACCCTCTTTTACCCCCACCCCACCCACCCTACCCACCCCCCACATGAGTGGTAGTGACAATCCTTCAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATT</genome_strand>
        <mrna_strand>AAGCTTAAAATCTTGATTAGTGATAAAGAACTGT-TTTTTTTTTCATCTTCTTCAACTCTTCCTGGATCTGAAAAAAAGA-ATTTTATTACTTCAAGAGGGGGGGTTTATTTAATATTTTTGTTTATAAATAAATTATTCAATTCAGATTTCAGAGAAACACTTCCCATTAATCTAGACCCTCTTTTACCCCCACCCCACCCACCCTACCCACCCCCCACATGAGTGGTAGTGACAATCCTTCAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAA-TGTATCTC-AACGTATGTCCATATCTGATGATGATCTANGTTTATTGGCGCGTTGTTTCCCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316426" ref_strand="+" ref_description="SGN-E316426 [cTOA-25-N23]">
      <seq>aagcttaaaatcttgattagtgataaagaactgttttttttttcatcttcttcaactcttcctggatctgaaaaaaagatattttattacttcaagagggggggtttatttaatatttttgtttataaataaattattcaattcagatttcagagaaacacttcccattaatctagaccctcttttacccccaccccacccaccctacccaccccccacatgagtggtagtgacaatccttcagagatgtctgaagatgaggagcgtccttgtccttcagatctcaccggtggtgttactgcaaaagcaaggaactgttgctttaacgccgccgttaccggtggtggaggggggatttttaacttttcgccacacccagatcaagttcttgaaaatgtgctggaaaatgttctttgcttcttaactgatcgccgtgaccgtaacgctgcatcccttgtaagcaaatcttggtatcgggctgaggctttaaccagatccgaagtgtttattggcaactgttatgctgtttcgccgacccgggttacgacccgtttcaagagggtgacctctgtggccattaaagggaaacctaggtttgctgatttcagtttgcttcctccagattggggtgctcactttactccttgggcttcggttttgggtgattcttatcgtggccttgagaaattgtatctcaaacgtatgtccatatctgatgatgatctaggtttattggcgcgttgtttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="162382" stop="161034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162082" g_stop="161334" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E316426" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162082" e_stop="161334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTAAAATCTTGATTAGTGATAAAGAACTGTTTTTTTTTTTCATCTTCTTCAACTCTTCCTGGATCTGAAAAAAAGATATTTTATTACTTCAAGA--GGGGGTTTATTTAATATTTTTGTTTATAAATAAATTATTCAATTCAGATTTCAGAGAAACACTTCCCATTAATCTAGACCCTCTTTTACCCCCACCCCACCCACCCTACCCACCCCCCACATGAGTGGTAGTGACAATCCTTCAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCC</genome_strand>
        <mrna_strand>AAGCTTAAAATCTTGATTAGTGATAAAGAACTGT-TTTTTTTTTCATCTTCTTCAACTCTTCCTGGATCTGAAAAAAAGATATTTTATTACTTCAAGAGGGGGGGTTTATTTAATATTTTTGTTTATAAATAAATTATTCAATTCAGATTTCAGAGAAACACTTCCCATTAATCTAGACCCTCTTTTACCCCCACCCCACCCACCCTACCCACCCCCCACATGAGTGGTAGTGACAATCCTTCAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316613" ref_strand="+" ref_description="SGN-E316613 [cTOA-25-N20]">
      <seq>aagcttaaaatcttgattagtgataaagaactgttttttttttcatcttcttcaactcttcctggatctgaaaaaaagatattttattacttcaagagggggggtttatttaatatttttgtttataaataaattattcaattcagatttcagagaaacacttcccattaatctagaccctcttttacccccaccccacccaccctacccaccccccacatgagtggtagtgacaatccttcagagatgtctgaagatgaggagcgtccttgtccttcagatctcaccggtggtgttactgcaaaagcaaggaactgttgctttaacgccgccgttaccggtggtggaggggggatttttaacttttcgccacacccagatcaagttcttgaaaatgtgctggaaaatgttctttgcttcttaactgatcgccgtgaccgtaacgctgcatcccttgtaagcaaatcttggtatcgggctgaggctttaaccagatccgaagtgtttattggcaactgttatgctgtttcgccgacccgggttacgacccgtttcaagagggtgacctctgtggccattaaagggaaacctaggtttgctgatttcagtttgcttcctccagattggggtgctcactttactccttgggcttcggntttgggtgattcttatcgtggccttgangaattgtatctcaaacgtatgtccatatctgatgatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="162382" stop="161059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162082" g_stop="161359" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E316613" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162082" e_stop="161359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTAAAATCTTGATTAGTGATAAAGAACTGTTTTTTTTTTTCATCTTCTTCAACTCTTCCTGGATCTGAAAAAAAGATATTTTATTACTTCAAGA--GGGGGTTTATTTAATATTTTTGTTTATAAATAAATTATTCAATTCAGATTTCAGAGAAACACTTCCCATTAATCTAGACCCTCTTTTACCCCCACCCCACCCACCCTACCCACCCCCCACATGAGTGGTAGTGACAATCCTTCAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCT</genome_strand>
        <mrna_strand>AAGCTTAAAATCTTGATTAGTGATAAAGAACTGT-TTTTTTTTTCATCTTCTTCAACTCTTCCTGGATCTGAAAAAAAGATATTTTATTACTTCAAGAGGGGGGGTTTATTTAATATTTTTGTTTATAAATAAATTATTCAATTCAGATTTCAGAGAAACACTTCCCATTAATCTAGACCCTCTTTTACCCCCACCCCACCCACCCTACCCACCCCCCACATGAGTGGTAGTGACAATCCTTCAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGNTTTGGGTGATTCTTATCGTGGCCTTGANGAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325959" ref_strand="+" ref_description="SGN-E325959 [cTOC-12-H8]">
      <seq>aactagtctcgagtttttttttttttttttttaaaattaattcataggatatataaagtgtgaaagaaaagaaaaagtgtgtagttaggtagttgagaagtgaaaattaagatggaatttgatgatgaccaagaagagcaggaacaagaaattggcgctgtgggagcggaaaattatgtaacgacggggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagtaatgttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaaggtactatggatgcacttaaatgtgcggcgtgtaattgccataggaatttccaccgtaaggaagcggaaggtgagaaagattggggtggcgtatgcaaaagcaagatgaggcattagtgcagcagttttgtgcagagacaaatgtcaagagacatgttttcaaagtttggatgcacaacaacaagcacactcttggtaaaaaaccctaaaactaaaaattttgcttaattttgctttttcacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="147072" stop="185428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="183616" g_stop="183634" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.579"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="183635" i_stop="184182" i_length="548">
            <donor d_prob="0.919" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184183" g_stop="184503" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="340" r_length="321" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="184588" g_stop="184661" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="414" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="184662" i_stop="184956" i_length="295">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="184957" g_stop="185128" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="586" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E325959" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="183616" e_stop="183634"/>
          <exon e_start="184183" e_stop="184503"/>
          <exon e_start="184588" e_stop="184661"/>
          <exon e_start="184957" e_stop="185128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTCTCGTGCTTACTGTAAAGTAATTTCAGTATTCTTTCACTTTTACCTCACTTTGCCAAAACAATAAAAAAAAAATTATTTCATTAATCTAGCACATTATTTACTACAGTAAAAAAATTATTTTTAACATGATACTTTTCATTTTCTTAGATAAAAATGATTAATTTTTGAACTTGAACTATACGAAGATTTATGTGTAATCAAATTTTATACCGTTTGTATCTGGAAAAACAAATTACCTTTAATTTTTTTAAAAGAATTATATAAACTCTATTAGGGTTTTTGAAAAAAAGAAATAAAAAAAAAATTAAATGATGAAGAATCAAGTTTAAAAAGACCATCTTTTATTTTTCTTCTTTAATTTGGGTAATTGATGTCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGGGGTGGGGGTGGAGGGAGTGGTGGGGTGGGTGGTTCAAGAAAGAGGTTTAGGACAAAGTTCACAGGAGACCAAAAGGATAAAATGTTGGCATTTGCAGAAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTT</genome_strand>
        <mrna_strand>AACTAGTCTCGAGTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTAAAATTAATTCATAGGATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG....................................................................................GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAG.......................................................................................................................................................................................................................................................................................................AAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320001" ref_strand="+" ref_description="SGN-E320001 [cTOB-31-I23]">
      <seq>tgatgtccacaccctcttctttctcttatcttctcttctgatcttcatctttctcatcactaatcattttcccctttctcttttttttttcttctctcactatcaaaattctctaaatatacaacaaccccactttagatctattttttttctttaacttgagatgatgtagatttttatttttttgaaatagtcaattttttaaaattaattcataatatatataaagtgtgaaagaaaagaaaaagtgtgtagttaggtagttgagaagtgaaaattaagatggaatttgatgatgaccaagaagagcaggaacaagaaattggcgctgtgggagcggaaaattatgtaacgacggggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagtaatgttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaagtactatggatgcacttaaatgtgcggcgtgtaattgccataggaatttccaccgtaaggaagcgggaggtgaggtatttcatcataccccacctccccaccttactcatcaccaccatcaccatccccaattttcacctttttcttcttatcgaaccacccaccatccatctgggttactacatgttaacccacccccacatcagcgccctttggcgctggcatctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="183692" stop="185118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="183992" g_stop="184503" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184588" g_stop="184818" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="741" r_length="231" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E320001" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="183992" e_stop="184503"/>
          <exon e_start="184588" e_stop="184818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTT</genome_strand>
        <mrna_strand>TGATGTCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCT-TTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGAAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAA-....................................................................................GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGGAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAACCACCCACCATCCATCTGGGTTACTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGGCATCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342023" ref_strand="+" ref_description="SGN-E342023 [cTOF-10-O6]">
      <seq>tccacaccctcttctttctcttatcttctcttctgatcttcatctttctcatcactaatcattttcccctttctcttttttttttcttctctcactatcaaaattctctaaatatacaacaaccccactttagatctattttttttctttaacttgagatgatgtagatttttatttttttgaaatagtcaattttttaaaattaattcataatatatataaagtgtgaaagaaaagaaaaagtgtgtagttaggtagttgagaagtgaaaattaagatggaatttgatgatgaccaagaagagcaggaacaagaaattggcgctgtgggagcggaaaattatgtaacgacggggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagtaatgttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaaggtactatggatgcacttaaatgtgcggcgtgtaattgccataggaatttccaccgtaaggaagcggaaggtgaggtatttcatcataccccacctccccaccttactcatcaccaccatcaccatccccaattttcacctttttcttcttatcgaaccacccaccatccatctgggtacctacatgttaacccacccccacatcagcgccctttggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="183697" stop="185106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="183997" g_stop="184503" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184588" g_stop="184806" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="725" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E342023" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="183997" e_stop="184503"/>
          <exon e_start="184588" e_stop="184806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGC</genome_strand>
        <mrna_strand>TCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCT-TTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGAAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG....................................................................................GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAACCACCCACCATCCATCTGGGTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315490" ref_strand="+" ref_description="SGN-E315490 [cTOA-22-F6]">
      <seq>tccacaccctcttctttctcttatcttctcttctgatcttcatctttctcatcactaatcattttcccctttctcttttttttttcttctctcactatcaaaattctctaaatatacaacaaccccactttagatctattttttttctttaacttgagatgatgtagatttttatttttttgaaatagtcaattttttaaaattaattcataatatatataaagtgtgaaagaaaagaaaaagtgtgtagttaggtagttgagaagtgaaaattaagatggaatttgatgatgaccaagaagagcaggaacaagaaattggcgctgtgggagcggaaaattatgtaacgacggggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagtaatgttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaaggtactatggatgcacttaaatgtgcggcgtgtaattgccataggaatttccaccgtaaggaagcggaaggtgaggtatttcatcataccccacctccccaccttactcatcaccaccatcaccatccccaattttcacctttttcttcttatcgaaccaccaccatccatctggttacctacatgttaacccanccccacatcagcgccctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="183697" stop="185102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="183997" g_stop="184503" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184588" g_stop="184802" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="720" r_length="214" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E315490" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="183997" e_stop="184503"/>
          <exon e_start="184588" e_stop="184802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTG</genome_strand>
        <mrna_strand>TCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCT-TTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGAAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG....................................................................................GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAACCA-CCACCATCCATCTGGTTACCTACATGTTAACCCANCCCCACATCAGCGCCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376032" ref_strand="+" ref_description="SGN-E376032 [TUS-40-E6]">
      <seq>tccacaccctcttctttctcttatcttctcttctgatcttcatctttctcatcactaatcattttcccctttctcttttttttttcttctctcactatcaaaattctctaaatatacaacaaccccactttagatctattttttttctttaacttgagatgatgtagatttttatttttttgaaatagtcaattttttaaaattaattcataatatatataaagtgtgaaagaaaagaaaaagtgtgtagttaggtagttgagaagtgaaaattaagatggaatttgatgatgaccaagaagagcaggaacaagaaattggcgctgtgggagcggaaaattatgtaacgacggggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagtaatgttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaaggtactatggatgcacttaaatgtgcggcgtgtaattgccataggaatttccaccgtaaggaagcggaaggtgaggtatttcatcataccccacctccccaccttactcatcaccaccatcaccatccccaattttcacctttttcttcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="183697" stop="185039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="183997" g_stop="184503" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184588" g_stop="184739" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="658" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E376032" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="183997" e_stop="184503"/>
          <exon e_start="184588" e_stop="184739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTAT</genome_strand>
        <mrna_strand>TCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCT-TTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGAAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG....................................................................................GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319060" ref_strand="+" ref_description="SGN-E319060 [cTOB-14-L9]">
      <seq>tccacaccctcttctttctcttatcttctcttctgatcttcatctttctcatcactaatcattttcccctttctcttttttttttcttctctcactatcaaaattctctaaatatacaacaaccccactttagatctattttttttctttaacttgagatgatgtagatttttatttttttgaaatagtcaattttttaaaattaattcataatatatataaagtgtgaaagaaaagaaaaagtgtgtagttaggtagttgagaagtgaaaattaagatggaatttgatgatgaccaagaagagcaggaacaagaaattggcgctgtgggagcggaaaattatgtaacgacggggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagtaatgttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaaggtactatggatgcacttaaatgtgcggcgtgtaattgccataggaatttccaccgtaaggaagcggaaggtgaggtatttcatcatacccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="183697" stop="184979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="183997" g_stop="184503" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184588" g_stop="184679" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="598" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E319060" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="183997" e_stop="184503"/>
          <exon e_start="184588" e_stop="184679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCA</genome_strand>
        <mrna_strand>TCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCT-TTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGAAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG....................................................................................GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474658" ref_strand="+" ref_description="SGN-E474658 [cSTB-37-E8]">
      <seq>ccacaccctcttctttctcttatcttctcttctgatcttcatctttctcatcactaattattttcccctttctcttttttttcttctctcactatcaaaattctctaaatataacaacaaccccactttagatctgttttttttttctttaacttaagatgatgtagatttttattttctttttttgaatagtcaattttttttttaattaattcataagatatataaagtgtgaaagaacagaaaaaagtgtgtaggtgggtagttgagaagtgaaattaagatggaatttgatgaagaccaagaagagcaggaacaagaaattggcgcagcgggagcagaaaattatgtaacaacagggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagtaatgttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctagatgggtgtggcgaatttatgccggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="183698" stop="184792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="183998" g_stop="184492" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E474658" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="183998" e_stop="184492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATAT-ACAACAACCCCACTTTAGATC--TATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTA---T-TTTTTTGGAATAGTCAA--TTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAG-AAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGC</genome_strand>
        <mrna_strand>CCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATTATTTTCCCCTTTCTCT-TTTT-TT-TCTTCTCTCACTATCAAAATTCTCTAAATATAACAACAACCCCACTTTAGATCTGTTTTTTTTTTCTTTAACTTAAGATGATGTAGATTTTTATTTTCTTTTTTTGAATAGTCAATTTTTTTTTTAATTAATTCATAAGATATATAAAGTGTGAAAGAACAGAAAAAAGTGTGTAGGTGGGTAGTTGAGAAGTG-AAATTAAGATGGAATTTGATGAAGACCAAGAAGAGCAGGAACAAGAAATTGGCGCAGCGGGAGCAGAAAATTATGTAACAACAGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTAGATGGGTGTGGCGAATTTATGCCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309488" ref_strand="+" ref_description="SGN-E309488 [cTOA-2-M2]">
      <seq>tcttctttctcttattttctcttctgatcttcatctttgtcagcactaatcattttcccctttctcttttttttttcttctctcactatcaaaattctctaaatatacaacaaccccactttagatctattttttttctttaacttgagatgatgtagatttttatttttttgaaatagtcaattttttaaaattaattcataatatatataaagtgtgaaagaaaagaaaaagtgtgtagttaggtagttgagaagtgaaaattaagatggaatttgatgatgaccaagaagagcaggaacaagaaattggcgctgtgggagcggaaaattatgtaacgacggggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="183706" stop="184706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="184006" g_stop="184406" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E309488" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="184006" e_stop="184406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGT</genome_strand>
        <mrna_strand>TCTTCTTTCTCTTATTTTCTCTTCTGATCTTCATCTTTGTCAGCACTAATCATTTTCCCCTTTCTCT-TTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGAAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347847" ref_strand="+" ref_description="SGN-E347847 [cTOF-26-N24]">
      <seq>ttctttctcttatcttctcttctgatcttcatctttctcatcactaatcattttcccctttctctttttttttttcttctctcactatcaaaattctctaaatatacaacaaccccactttagatctattttttttctttaacttgagatgatgtagatttttatttttttgaaatagtcaattttttaaaattaattcataatatatataaagtgtgaaagaaaagaaaaagtgtgtagttaggtagttgagaagtgaaaattaagatggaatttgatgatgaccaagaagagcaggaacaagaaattggcgctgtgggagcggaaaattatgtaacgacggggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagtaatgttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaaggtactatggatgcacttaaatgtgcggcgtgtaattgccataggaatttccaccgtaaggaagcggaaggtgaggtatttcatcataccccacctccccaccttactcatcaccaccatcaccatccccaattttcacctttttcttcttatcgaaccacccaccatccatctggttacctacatgttaacccacccccacatcagcgccctttggcgctgccatctacttctagggacgacgaagatatgtcgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="183708" stop="185145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="184008" g_stop="184503" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184588" g_stop="184845" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="754" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E347847" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="184008" e_stop="184503"/>
          <exon e_start="184588" e_stop="184845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACC</genome_strand>
        <mrna_strand>TTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTTTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGAAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG....................................................................................GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAACCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317311" ref_strand="+" ref_description="SGN-E317311 [cTOA-28-L20]">
      <seq>tctcttatcttctcttctgatcttcatctttctcatcactaatcattttcccctttctctttttttttcttctctcactatcaaaattctctaaatatacaacaaccccactttagatctattttttttctttaacttgagatgatgtagatttttatttttttgaaatagtcaattttttaaaattaattcataatatatataaagtgtgaaagaaaagaaaaagtgtgtagttaggtagttgagaagtgaaaattaagatggaatttgatgatgaccaagaagagcaggaacaagaaattggcgctgtgggagcggaaaattatgtaacgacggggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagtaatgttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaaggtactatggatgcacttaaatgtgcggcgtgtaattgccataggaatttccaccgtaaggaagcggaaggtgaggtatttcatcataccccacctccccaccttactcatcaccaccatcaccatccccaattttcacctttttcttcttatcgaaccacccaccatccatctggttacctacatgttaacccacccccacatcagcgccctttggcgctgccatctacttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="183713" stop="185121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="184013" g_stop="184503" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184588" g_stop="184821" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="723" r_length="234" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E317311" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="184013" e_stop="184503"/>
          <exon e_start="184588" e_stop="184821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTA</genome_strand>
        <mrna_strand>TCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTC--TTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGAAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG....................................................................................GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAACCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317433" ref_strand="+" ref_description="SGN-E317433 [cTOA-28-L3]">
      <seq>tctcttatcttctcttctgatcttcatctttctcatcactaatcattttcccctttctctttttttttcttctctcactatcaaaattctctaaatatacaacaaccccactttagatctattttttttctttaacttgagatgatgtagatttttatttttttgaaatagtcaattttttaaaattaattcataatatatataaagtgtgaaagaaaagaaaaagtgtgtagttaggtagttgagaagtgaaaattaagatggaatttgatgatgaccaagaagagcaggaacaagaaattggcgctgtgggagcggaaaattatgtaacgacggggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagtaatgttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaaggtactatggatgcacttaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="183713" stop="184908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="184013" g_stop="184503" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184588" g_stop="184608" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="510" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E317433" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="184013" e_stop="184503"/>
          <exon e_start="184588" e_stop="184608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAAT</genome_strand>
        <mrna_strand>TCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTC--TTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGAAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG....................................................................................GTACTATGGATGCACTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312864" ref_strand="+" ref_description="SGN-E312864 [cTOA-8-M6]">
      <seq>ttaggtatagagagtgttagaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaaggtactatggatgcacttaaatgtgcggcgtgtaattgccatatgaatttccaccgtaaggaagcggaaggtgaggtatttcatcataccccacctccccaccttactcatcaccaccatcaccatccccaattttcacctttttcttcttatcgaaccacccaccatccatctggttacctacatgttaacccacccccacatcagcgccctttggcgctgccatctacttctagggacgacgaagatatgtcgaaccctattagtagtgggggtgggggtggagggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="184111" stop="185177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="184411" g_stop="184503" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184588" g_stop="184877" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="383" r_length="290" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E312864" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="184411" e_stop="184503"/>
          <exon e_start="184588" e_stop="184877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGGGGTGGGGGTGGAGGGAGT</genome_strand>
        <mrna_strand>TTAGGTATAGAGAGTGTTAGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG....................................................................................GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATATGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAACCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTATTAGTAGTGGGGGTGGGGGTGGAGGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313247" ref_strand="+" ref_description="SGN-E313247 [cTOA-18-I14]">
      <seq>ttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaaggtactatggatgcacttaaatgtgcggcgtgtaattgccataggaatttccaccgtaaggaagcggaaggtgaggtatttcatcataccccacctccccaccttactcatcaccaccatcaccatccccaattttcacctttttcttcttatcgaaccacccaccatccatctggttacctacatgttaacccacccccacatcagcgccctttggcgctgccatctacttctagggacgacgaagatatgtcgaaccctagtagtagtgggggtgggggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="184111" stop="185170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="184411" g_stop="184503" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184588" g_stop="184870" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="376" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E313247" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="184411" e_stop="184503"/>
          <exon e_start="184588" e_stop="184870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGGGGTGGGGGTGG</genome_strand>
        <mrna_strand>TTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG....................................................................................GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAACCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGGGGTGGGGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414886" ref_strand="-" ref_description="SGN-E414886 [STM-20-G14]">
      <seq>accatcaccaccctcaattttccctttttcttcttatagaaccacccatcatccgtctggttacctacatgttaacccaccccccacatcagcgccctttggcgctgccatctacttctagggacgacgaagatatgtcgaaccctagtagtagtggtggtgggggtgggagtggtggggtgggtggttcaagaaagaggtttaggacaaagttcacaggagaccaaaaggataaaatgttggcatttgcggaaagattggggtggcgtatgcagaagcaagatgaggcattagtgcagcagttttgtgcagagacaaatatcaagagacatgttttcaaagtttggatgcacaacaacaagcacactcttggtaaaaaaccctaaacaaaatttgcttaattttgctttttcccctttttatagggaaaaaagaagtaaattaaagcatatatgtatttgatggagctagctaggaggaaaaaaattggaagaaggaagctagttttaattaattagatcattattaagccaaggatttgttgtaagagagtactattattatgattattattattattaaatttgacaatttgatggtggaaaaaaacaaaaaaaggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="184402" stop="185595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="184702" g_stop="185290" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="617"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E414886" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414886" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="184702" e_stop="185290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCA-CCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGGGGTGGGGGTGGAGGGAGTGGTGGGGTGGGTGGTTCAAGAAAGAGGTTTAGGACAAAGTTCACAGGAGACCAAAAGGATAAAATGTTGGCATTTGCAGAAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTTTATAAGGTAAAAAAAAGTAAATCAAAGCATATGTAGTATCTATTTGATGGAGCTAGCTAGGAGGGAAAAAAAATTGGAACAAGGAAGCTAGTTTTAATTAATTAGATCATCATTAAGCCAAGGATTTGTTGTAAGAGAGTACTATTATTATGATTATTATTA</genome_strand>
        <mrna_strand>ACCATCACCACCCTCAATTTTC-CCTTTTTCTTCTTATAGAACCACCCATCATCCGTCTGGTTACCTACATGTTAACCCACCCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGTGGTGGGGGT---GGGAGTGGTGGGGTGGGTGGTTCAAGAAAGAGGTTTAGGACAAAGTTCACAGGAGACCAAAAGGATAAAATGTTGGCATTTGCGGAAAGATTGGGGTGGCGTATGCAGAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATATCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCT-AAAC--AAAA-TTTGCTTAATTTTGCTTTTTCCCCTTTTTATAGGGAAAAAAGAAGTAAATTAAAGC--A--TA-TATGTATTTGATGGAGCTAGCTAGGA-GG-AAAAAAATTGGAAGAAGGAAGCTAGTTTTAATTAATTAGATCATTATTAAGCCAAGGATTTGTTGTAAGAGAGTACTATTATTATGATTATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376031" ref_strand="+" ref_description="SGN-E376031 [TUS-40-E6](-)">
      <seq>catccatctggttacctacatgttaacccacccccacatcagcgccctttggcgctgccatctacttctagggacgacgaagatatgtcgaaccctagtagtagtgggggtgggggtggagggagtggtggggtgggtggttcaagaaagaggtttaggacaaagttcacaggagaccaaaaggataaaatgttggcatttgcagaaagattggggtggcgtatgcaaaagcaagatgaggcattagtgcagcagttttgtgcagagacaaatgtcaagagacatgttttcaaagtttggatgcacaacaacaagcacactcttggtaaaaaaccctaaaactaaaaattttgcttaattttgctttttcacctttttatagggtaaaaaaaagtaaatcaaagcatatgtagtatctatttgatggagctagctaggagggaaaaaaaaattggaacaaggaagctagttttaattaattagatcatcattaagccaaggatttgttgtaagagagtactattattatgattattattaacattttgatgataagtaacttgtttagggttgctagttacaagtacgtactagctagacattgttagtgagtcagtcggtcacctttggtactttctttatttaaattattttcttccatctgaatatttttacgtgttattggacgatatcttatgcaatattgatgagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="184452" stop="185646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="184752" g_stop="185460" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="722"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E376031" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="184752" e_stop="185460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGGGGTGGGGGTGGAGGGAGTGGTGGGGTGGGTGGTTCAAGAAAGAGGTTTAGGACAAAGTTCACAGGAGACCAAAAGGATAAAATGTTGGCATTTGCAGAAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTTTATAAGGTAAAAAAAAGTAAATCAAAGCATATGTAGTATCTATTTGATGGAGCTAGCTAGGAGGG-AAAAAAAATTGGAACAAGGAAGCTAGTTTTAATTAATTAGATCATCATTAAGCCAAGGATTTGTTGTAAGAGAGTACTATTATTATGATTATTATTAACATTTTGATGATAAGTAACTTGTTTAGGGTTGCTAGTTACAAGTACGTACTAGCTAGACATTGTTAGTGAGTCAGTCGGTCACCTTTGGTACTTTCTTTATTTAAATTATTTTCTTCCATCTGAATATTTTTACGTGTTATTGGACGATATCTTATGCAATATTGATGA</genome_strand>
        <mrna_strand>CATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGGGGTGGGGGTGGAGGGAGTGGTGGGGTGGGTGGTTCAAGAAAGAGGTTTAGGACAAAGTTCACAGGAGACCAAAAGGATAAAATGTTGGCATTTGCAGAAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTTTATAGGGTAAAAAAAAGTAAATCAAAGCATATGTAGTATCTATTTGATGGAGCTAGCTAGGAGGGAAAAAAAAATTGGAACAAGGAAGCTAGTTTTAATTAATTAGATCATCATTAAGCCAAGGATTTGTTGTAAGAGAGTACTATTATTATGATTATTATTAACATTTTGATGATAAGTAACTTGTTTAGGGTTGCTAGTTACAAGTACGTACTAGCTAGACATTGTTAGTGAGTCAGTCGGTCACCTTTGGTACTTTCTTTATTTAAATTATTTTCTTCCATCTGAATATTTTTACGTGTTATTGGACGATATCTTATGCAATATTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266634" ref_strand="+" ref_description="SGN-E266634 [cLEI-5-A12]">
      <seq>ttttttattcatatggaagaaaataatttaaataaagaaagtaccaaaggtgaccgactgactcactaacaatgtctagctagtacgtacttgtaactagcaaccctaaacaagttacttatcatcaaaatgttaataataatcataataatagtactctcttacaacaaatccttggcttaatgatgatctaattaattaaaactagcttccttgttccaatttttttttccctcctagctagctccatcaaatagatactacatatgctttgatttacttttttttaccctataaaaaggtgaaaaagcaaaattaagcaaaatttttagttttagggttttttaccaagagtgtgcttgttgttgtgcatccaaactttgaaaacatgtctcttgacatttgtctctgcacaaaactgctgcactaatgcctcatcttgcttttgcatacgccaccccaatctttctgcaaatgccaacattttatccttttggtctcctgtgaactttgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="185646" stop="184608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185411" g_stop="184908" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="517" r_length="505" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E266634" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185411" e_stop="184908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAGAAAATAATTTAAATAAAGAAAGTACCAAAGGTGACCGACTGACTCACTAACAATGTCTAGCTAGTACGTACTTGTAACTAGCAACCCTAAACAAGTTACTTATCATCAAAATGTTAATAATAATCATAATAATAGTACTCTCTTACAACAAATCCTTGGCTTAATGATGATCTAATTAATTAAAACTAGCTTCCTTGTTCCAA-TTTTTTTTCCCTCCTAGCTAGCTCCATCAAATAGATACTACATATGCTTTGATTTACTTTTTTTTACCTTATAAAAAGGTGAAAAAGCAAAATTAAGCAAAATTTTTAGTTTTAGGGTTTTTTACCAAGAGTGTGCTTGTTGTTGTGCATCCAAACTTTGAAAACATGTCTCTTGACATTTGTCTCTGCACAAAACTGCTGCACTAATGCCTCATCTTGCTTTTGCATACGCCACCCCAATCTTTCTGCAAATGCCAACATTTTATCCTTTTGGTCTCCTGTGAACTTTGTCCT</genome_strand>
        <mrna_strand>ATGGAAGAAAATAATTTAAATAAAGAAAGTACCAAAGGTGACCGACTGACTCACTAACAATGTCTAGCTAGTACGTACTTGTAACTAGCAACCCTAAACAAGTTACTTATCATCAAAATGTTAATAATAATCATAATAATAGTACTCTCTTACAACAAATCCTTGGCTTAATGATGATCTAATTAATTAAAACTAGCTTCCTTGTTCCAATTTTTTTTTCCCTCCTAGCTAGCTCCATCAAATAGATACTACATATGCTTTGATTTACTTTTTTTTACCCTATAAAAAGGTGAAAAAGCAAAATTAAGCAAAATTTTTAGTTTTAGGGTTTTTTACCAAGAGTGTGCTTGTTGTTGTGCATCCAAACTTTGAAAACATGTCTCTTGACATTTGTCTCTGCACAAAACTGCTGCACTAATGCCTCATCTTGCTTTTGCATACGCCACCCCAATCTTTCTGCAAATGCCAACATTTTATCCTTTTGGTCTCCTGTGAACTTTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221443" ref_strand="+" ref_description="SGN-E221443 [cLEL-10-G14](-)">
      <seq>ttcacaggagaccaaaaggataaaatgttggcatttgcagaaagattggggtggcgtatgcaaaagcaagatgaggcattagtgcagcagttttgtgcagagacaaatgtcaagagacatgttttcaaagtttggatgcacaacaacaagcacactcttggtaaaaaaccctaaaactaaaaattttgcttaattttgctttttcacctttttatagggtaaaaaaaagtaaatcaaagcatatgtagtatctatttgatggagctagctaggagggaaaaaaaaattggaacaaggaagctagttttaattaattagatcatcattaagccaaggatttgttgtaagagagtactattattatgattattattaacattttgatgataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="184617" stop="185609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="184917" g_stop="185305" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="410"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-E221443" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="184917" e_stop="185305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAGGAGACCAAAAGGATAAAATGTTGGCATTTGCAGAAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTTTATAAGGTAAAAAAAAGTAAATCAAAGCATATGTAGTATCTATTTGATGGAGCTAGCTAGGAGGG-AAAAAAAATTGGAACAAGGAAGCTAGTTTTAATTAATTAGATCATCATTAAGCCAAGGATTTGTTGTAAGAGAGTACTATTATTATGATTATTATTAACATTTTGATGATAA</genome_strand>
        <mrna_strand>TTCACAGGAGACCAAAAGGATAAAATGTTGGCATTTGCAGAAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTTTATAGGGTAAAAAAAAGTAAATCAAAGCATATGTAGTATCTATTTGATGGAGCTAGCTAGGAGGGAAAAAAAAATTGGAACAAGGAAGCTAGTTTTAATTAATTAGATCATCATTAAGCCAAGGATTTGTTGTAAGAGAGTACTATTATTATGATTATTATTAACATTTTGATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266486" ref_strand="+" ref_description="SGN-E266486 [cLEI-5-K15]">
      <seq>tattcaaatggaagaaagtactttaaataaagaaagtaccaaaggtgaccgactgactcactaacaatgtctagctagtacgtacttgtaactagcaaccctaaacaagttacttatcatcaaaatgttaataataatcataataatagtactctcttacaacaaatccttggcttaatgatgatctaattaattaaaactagcttacttgttccaattatttttatcctcctagctagctccatcaaatagatactacatatgctgggatttactgtatattaccctataaaaaggtgaaaaagcgaaagtaagcaaaatttttagttttagggttttttaccaagagtgtgcttgttgttgtgcatccaaactttgaaaacatgtctcttgacatttgtctctgcacaaaactgctgcactaatgcctaatcttgcttttgcatacgccaccccaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="185646" stop="184660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="185418" g_stop="184960" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-E266486" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="185418" e_stop="184960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCAGATGGAAGAAAATAATTTAAATAAAGAAAGTACCAAAGGTGACCGACTGACTCACTAACAATGTCTAGCTAGTACGTACTTGTAACTAGCAACCCTAAACAAGTTACTTATCATCAAAATGTTAATAATAATCATAATAATAGTACTCTCTTACAACAAATCCTTGGCTTAATGATGATCTAATTAATTAAAACTAGCTTCCTTGTTCCAATT-TTTTTTCCCTCCTAGCTAGCTCCATCAAATAGATACTACATATGCTTTGATTTACTTTTTTTTACCTTATAAAAAGGTGAAAAAGCAAAATTAAGCAAAATTTTTAGTTTTAGGGTTTTTTACCAAGAGTGTGCTTGTTGTTGTGCATCCAAACTTTGAAAACATGTCTCTTGACATTTGTCTCTGCACAAAACTGCTGCACTAATGCCTCATCTTGCTTTTGCATACGCCACCCCAATC</genome_strand>
        <mrna_strand>TATTCAAATGGAAGAAAGTACTTTAAATAAAGAAAGTACCAAAGGTGACCGACTGACTCACTAACAATGTCTAGCTAGTACGTACTTGTAACTAGCAACCCTAAACAAGTTACTTATCATCAAAATGTTAATAATAATCATAATAATAGTACTCTCTTACAACAAATCCTTGGCTTAATGATGATCTAATTAATTAAAACTAGCTTACTTGTTCCAATTATTTTTATCCTCCTAGCTAGCTCCATCAAATAGATACTACATATGCTGGGATTTACTGTATATTACCCTATAAAAAGGTGAAAAAGCGAAAGTAAGCAAAATTTTTAGTTTTAGGGTTTTTTACCAAGAGTGTGCTTGTTGTTGTGCATCCAAACTTTGAAAACATGTCTCTTGACATTTGTCTCTGCACAAAACTGCTGCACTAATGCCTAATCTTGCTTTTGCATACGCCACCCCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>146</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12797" PGL_stop="13301"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12797" e_stop="13301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="12797" e_stop="13301" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12797" stop="13301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGGAGATGGTGCAAAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTCTAGTTTTTGCAACTTGATAAACACTTTTCAAGAACTCTTGCAAAGGCTAATACAAAGCAAAGGCAGAATCATTCCTAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTTTTCAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTATTTTTCTACTTTGGCTTGTTGAGCAATAGAGGTTTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCTTTTGAAGATTAGTGAAAACAATTGAAAATCCTATGAGACAGGTC</gDNA_template>
            <first_frame> T  G  D  G  A  K  S  R  C  T  L  P  D  G  V  R  K  C  D  P  S  N  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  G  T  F  L  N  T  F  L  *  F  L  Q  L  D  K  H  F  S  R  T  L  A  K  A  N  T  K  Q  R  Q  N  H  S  *  D  N  S  N  I  W  S  F  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  V  C  C  F  Q  S  L  G  C  P  G  G  I  A  *  W  V  D  Y  F  S  T  L  A  C  *  A  I  E  V  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  S  L  L  L  L  K  I  S  E  N  N  *  K  S  Y  E  T  G  </first_frame>
            <second_frame>  L  E  M  V  Q  K  V  G  A  H  F  P  M  A  S  E  S  V  T  L  P  T  N  G  K  E  V  *  E  S  D  L  P  I  *  K  A  L  S  *  T  L  F  S  S  F  C  N  L  I  N  T  F  Q  E  L  L  Q  R  L  I  Q  S  K  G  R  I  I  P  R  T  T  A  T  S  G  A  F  R  L  V  V  *  E  F  I  L  L  F  L  N  C  K  P  L  L  N  L  *  R  N  W  C  V  V  F  K  V  *  V  V  Q  V  G  *  L  S  G  *  I  I  F  L  L  W  L  V  E  Q  *  R  F  I  A  *  R  *  D  *  *  L  F  L  T  F  G  V  I  V  F  R  F  C  F  *  R  L  V  K  T  I  E  N  P  M  R  Q  V </second_frame>
            <third_frame>   W  R  W  C  K  K  *  V  H  T  S  R  W  R  Q  K  V  *  P  F  Q  P  M  A  K  K  F  R  K  V  T  C  P  Y  K  R  H  F  P  K  H  F  S  L  V  F  A  T  *  *  T  L  F  K  N  S  C  K  G  *  Y  K  A  K  A  E  S  F  L  G  Q  Q  Q  H  L  E  L  F  V  *  L  F  R  N  L  F  S  C  S  *  I  V  N  H  S  *  I  Y  K  G  I  G  V  L  F  S  K  S  R  L  S  R  W  D  S  L  V  G  R  L  F  F  Y  F  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V  *  S  C  F  A  F  A  F  E  D  *  *  K  Q  L  K  I  L  *  D  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0049I21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18884" PGL_stop="21215"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18884" e_stop="19123"/>
            <exon e_start="21192" e_stop="21215"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.882" e_score="0.938"/>
          <exon-only e_score="0.565"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="18884" e_stop="19123" e_length="240"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.882">
            <gDNA_intron_boundary i_start="19124" i_stop="21191" i_length="2068"/>
          </intron>
          <exon e_serial="2" e_score="0.565">
            <gDNA_exon_boundary e_start="21192" e_stop="21215" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18884" stop="19123"/>
              <exon start="21192" stop="21214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18885" stop="19123"/>
              <exon start="21192" stop="21215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18885" stop="19123"/>
              <exon start="21192" stop="21215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18885" stop="19123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAAGAAAATAATCTGTGAGGAAAAATAGAGAGTGTGAGCGGTATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTCATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATGCAAGTGTAAAATCCTTACTATAGTGATATTTGTTGCTCCTCTCGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC : CTTCACAAAGAAACGAAATCGAAG</gDNA_template>
            <first_frame> R  I  T  K  E  R  K  E  E  *  G  I  T  E  E  N  N  L  *  G  K  I  E  S  V  S  G  I  V  V  R  W  K  N  Q  K  S  V  I  S  F  E  C  V  V  V  F  G  V  L  L  R  H  A  S  V  K  S  L  L  *  *  Y  L  L  L  L  S  G  R  G  F  S  L  I  *  E  G  F  H  :  L  H  K  E  T  K  S  K </first_frame>
            <second_frame>  E  L  Q  R  R  E  K  K  S  E  A  S  Q  K  K  I  I  C  E  E  K  *  R  V  *  A  V  L  *  *  G  G  K  I  K  R  V  S  F  L  L  N  V  *  W  S  L  E  F  Y  S  D  M  Q  V  *  N  P  Y  Y  S  D  I  C  C  S  S  R  V  V  V  F  L  L  F  R  R  V  S  T :   F  T  K  K  R  N  R   </second_frame>
            <third_frame>   N  Y  K  G  E  K  R  R  V  R  H  H  R  R  K  *  S  V  R  K  N  R  E  C  E  R  Y  C  S  E  V  E  K  S  K  E  C  H  F  F  *  M  C  S  G  L  W  S  F  T  Q  T  C  K  C  K  I  L  T  I  V  I  F  V  A  P  L  G  S  W  F  F  S  Y  L  G  G  F  P   : P  S  Q  R  N  E  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0049I21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23667" PGL_stop="23873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23667" e_stop="23873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="23667" e_stop="23873" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23667" stop="23873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGAGTAGTCCACAAACTACTTCTTAGTTTGTGAGAAAATAGTGTGGAAGTAATATTATTGTGAGTTGTAAAAAATAAAAAAGTGTGGAGTAGTAGTCATTTGACACTACAAAAATTTTCATCAATTTTATTGTATTACTTATTCGGGTATCATATTTACTCATTTTAATATTTGGTGTCGTTGTTACTCTCTTCCTATTGCTAT</gDNA_template>
            <first_frame> K  R  V  V  H  K  L  L  L  S  L  *  E  N  S  V  E  V  I  L  L  *  V  V  K  N  K  K  V  W  S  S  S  H  L  T  L  Q  K  F  S  S  I  L  L  Y  Y  L  F  G  Y  H  I  Y  S  F  *  Y  L  V  S  L  L  L  S  S  Y  C  Y </first_frame>
            <second_frame>  R  E  *  S  T  N  Y  F  L  V  C  E  K  I  V  W  K  *  Y  Y  C  E  L  *  K  I  K  K  C  G  V  V  V  I  *  H  Y  K  N  F  H  Q  F  Y  C  I  T  Y  S  G  I  I  F  T  H  F  N  I  W  C  R  C  Y  S  L  P  I  A   </second_frame>
            <third_frame>   E  S  S  P  Q  T  T  S  *  F  V  R  K  *  C  G  S  N  I  I  V  S  C  K  K  *  K  S  V  E  *  *  S  F  D  T  T  K  I  F  I  N  F  I  V  L  L  I  R  V  S  Y  L  L  I  L  I  F  G  V  V  V  T  L  F  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0049I21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="33373" PGL_stop="33878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33373" e_stop="33878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="33373" e_stop="33878" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33373" stop="33878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCTTTTAATTTGAATTAAAACTTGATTTAAAAAAAACATCTTCCAAGGCTACCCAGATGCTCGACGAGGTATGGATGGAGTTGAGGTCCAGTTGCTGACGCTGATCTTTGCTTCCTTGATTCCACTAGGGCCCTCTTTCTCCTCCTCGTTGATCATGACGTTGCAAACTTTCCCCTCTTCTTTGGTTAGTGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATACTACCTCCCATGAAACCTGCTGATCGAAATGATTGATGCAATGGCGGTATGGGTTTCTTCAGTGGATAGTAGTACCCATCCCTAGGTGGTTTCCAATTGAGCCATTCTTCGGTAGTGTACTTATATCCCAAACCAAAAGTGGTGGAATGTCGAACAGACTATACATGTTCGACTATCCCTTGCAATTCAGCCCCTAAACCTTTCCCAAGATCGAAACTGAACCAGACCATCATATCTATAATTTTTTCGCTGAACCAAGGTTGCAACTCAATATTACC</gDNA_template>
            <first_frame> T  L  L  I  *  I  K  T  *  F  K  K  N  I  F  Q  G  Y  P  D  A  R  R  G  M  D  G  V  E  V  Q  L  L  T  L  I  F  A  S  L  I  P  L  G  P  S  F  S  S  S  L  I  M  T  L  Q  T  F  P  S  S  L  V  S  D  N  P  F  K  S  S  E  I  S  S  I  L  P  P  M  K  P  A  D  R  N  D  *  C  N  G  G  M  G  F  F  S  G  *  *  Y  P  S  L  G  G  F  Q  L  S  H  S  S  V  V  Y  L  Y  P  K  P  K  V  V  E  C  R  T  D  Y  T  C  S  T  I  P  C  N  S  A  P  K  P  F  P  R  S  K  L  N  Q  T  I  I  S  I  I  F  S  L  N  Q  G  C  N  S  I  L   </first_frame>
            <second_frame>  L  F  *  F  E  L  K  L  D  L  K  K  T  S  S  K  A  T  Q  M  L  D  E  V  W  M  E  L  R  S  S  C  *  R  *  S  L  L  P  *  F  H  *  G  P  L  S  P  P  R  *  S  *  R  C  K  L  S  P  L  L  W  L  V  I  T  P  S  S  R  L  R  S  H  Q  Y  Y  L  P  *  N  L  L  I  E  M  I  D  A  M  A  V  W  V  S  S  V  D  S  S  T  H  P  *  V  V  S  N  *  A  I  L  R  *  C  T  Y  I  P  N  Q  K  W  W  N  V  E  Q  T  I  H  V  R  L  S  L  A  I  Q  P  L  N  L  S  Q  D  R  N  *  T  R  P  S  Y  L  *  F  F  R  *  T  K  V  A  T  Q  Y  Y  </second_frame>
            <third_frame>   S  F  N  L  N  *  N  L  I  *  K  K  H  L  P  R  L  P  R  C  S  T  R  Y  G  W  S  *  G  P  V  A  D  A  D  L  C  F  L  D  S  T  R  A  L  F  L  L  L  V  D  H  D  V  A  N  F  P  L  F  F  G  *  *  *  P  L  Q  V  V  *  D  L  I  N  T  T  S  H  E  T  C  *  S  K  *  L  M  Q  W  R  Y  G  F  L  Q  W  I  V  V  P  I  P  R  W  F  P  I  E  P  F  F  G  S  V  L  I  S  Q  T  K  S  G  G  M  S  N  R  L  Y  M  F  D  Y  P  L  Q  F  S  P  *  T  F  P  K  I  E  T  E  P  D  H  H  I  Y  N  F  F  A  E  P  R  L  Q  L  N  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33400" stop="33636"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKKNIFQGYPDARRGMDGVEVQLLTLIFASLIPLGPSFSSSLIMTLQTFPSSLVSDNPFKSSEISSILPPMKPADRND*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33673" stop="33876"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPSLGGFQLSHSSVVYLYPKPKVVECRTDYTCSTIPCNSAPKPFPRSKLNQTIISIIFSLNQGCNSIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="44126" PGL_stop="43566"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44126" e_stop="43566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="44126" e_stop="43566" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44126" stop="43566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACTCACACCACTACTGTCATTTTTGAACTATTACATGTTGATATTTGGGGTCCATATCAAACACTAACTCATGACAACTTCAAATACTTCATTACCTTAGTAGATGATTTTAGTAAATCTACCTGGACACATCTTCTAAGCTGTAAAAGCAATGTTTTTCATATACTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAACACCACTGTTAAAACCATCAGATCAGATAATGGTTTAGAATTCACTAGTAGTGAAACCACTTTGTTCTTCCAATCAAAAGGGATCATTCATCAGAAATCTTGTCCTTATACTCCTCAACAAAATGGTGTGGTCAAAAGAAAGCACAAATATATTCTTGAAACAGCAAGGGCTCTTCTTTTCCAGTCTAAACTCCCAGTGAAATATTGGGGTGAACGTATACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCATAATAAAACTCCCTATGATATCTTATATAAACACAAACCTACCTACTCACACTTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</gDNA_template>
            <first_frame> K  N  S  H  H  Y  C  H  F  *  T  I  T  C  *  Y  L  G  S  I  S  N  T  N  S  *  Q  L  Q  I  L  H  Y  L  S  R  *  F  *  *  I  Y  L  D  T  S  S  K  L  *  K  Q  C  F  S  Y  T  *  S  L  Y  T  H  G  *  E  P  V  Q  H  H  C  *  N  H  Q  I  R  *  W  F  R  I  H  *  *  *  N  H  F  V  L  P  I  K  R  D  H  S  S  E  I  L  S  L  Y  S  S  T  K  W  C  G  Q  K  K  A  Q  I  Y  S  *  N  S  K  G  S  S  F  P  V  *  T  P  S  E  I  L  G  *  T  Y  T  C  F  H  I  S  Y  K  *  T  T  F  F  S  S  P  *  *  N  S  L  *  Y  L  I  *  T  Q  T  Y  L  L  T  L  K  E  F  W  M  F  M  L  S  Y  Y </first_frame>
            <second_frame>  K  T  H  T  T  T  V  I  F  E  L  L  H  V  D  I  W  G  P  Y  Q  T  L  T  H  D  N  F  K  Y  F  I  T  L  V  D  D  F  S  K  S  T  W  T  H  L  L  S  C  K  S  N  V  F  H  I  L  K  A  F  I  L  M  V  E  N  Q  F  N  T  T  V  K  T  I  R  S  D  N  G  L  E  F  T  S  S  E  T  T  L  F  F  Q  S  K  G  I  I  H  Q  K  S  C  P  Y  T  P  Q  Q  N  G  V  V  K  R  K  H  K  Y  I  L  E  T  A  R  A  L  L  F  Q  S  K  L  P  V  K  Y  W  G  E  R  I  L  A  S  T  Y  L  I  N  R  L  P  S  F  P  L  H  N  K  T  P  Y  D  I  L  Y  K  H  K  P  T  Y  S  H  L  K  S  F  G  C  L  C  Y  P  T   </second_frame>
            <third_frame>   K  L  T  P  L  L  S  F  L  N  Y  Y  M  L  I  F  G  V  H  I  K  H  *  L  M  T  T  S  N  T  S  L  P  *  *  M  I  L  V  N  L  P  G  H  I  F  *  A  V  K  A  M  F  F  I  Y  L  K  P  L  Y  S  W  L  R  T  S  S  T  P  L  L  K  P  S  D  Q  I  M  V  *  N  S  L  V  V  K  P  L  C  S  S  N  Q  K  G  S  F  I  R  N  L  V  L  I  L  L  N  K  M  V  W  S  K  E  S  T  N  I  F  L  K  Q  Q  G  L  F  F  S  S  L  N  S  Q  *  N  I  G  V  N  V  Y  L  L  P  H  I  L  *  I  D  Y  L  L  F  L  S  I  I  K  L  P  M  I  S  Y  I  N  T  N  L  P  T  H  T  *  R  V  L  D  V  Y  V  I  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44125" stop="43568"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTHTTTVIFELLHVDIWGPYQTLTHDNFKYFITLVDDFSKSTWTHLLSCKSNVFHILKAFILMVENQFNTTVKTIRSDNGLEFTSSETTLFFQSKGIIHQKSCPYTPQQNGVVKRKHKYILETARALLFQSKLPVKYWGERILASTYLINRLPSFPLHNKTPYDILYKHKPTYSHLKSFGCLCYPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="49513" PGL_stop="48788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49513" e_stop="48788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="49513" e_stop="48788" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49513" stop="49029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49088" stop="48788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCACAATACACCCGTAACCACTACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTGTGGGTCCTTCCTGGCCATCCCTAAATCACCACCACCCGTGCCACCCCCCACTACTCATCCCATGTTAACCCGTGGCAAAGCCAGTATCTTTAAACCCAAAACCTTTCAGGCTATCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTTTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGGTCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAAGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTCGTGTGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTAATAAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCACTTCCCTCAACATGTTTGCAAACTCCAGAAGTGTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTAGTACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  Q  Y  T  R  N  H  Y  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  L  W  V  L  P  G  H  P  *  I  T  T  T  R  A  T  P  H  Y  S  S  H  V  N  P  W  Q  S  Q  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  W  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  R  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  V  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  S  E  N  V </first_frame>
            <second_frame>  H  H  N  T  P  V  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  C  G  S  F  L  A  I  P  K  S  P  P  P  V  P  P  P  T  T  H  P  M  L  T  R  G  K  A  S  I  F  K  P  K  T  F  Q  A  I  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  F  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  G  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  V  V  C  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  N  K  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  H  F  P  Q  H  V  C  K  L  Q  K  C  L  Y  G  L  K  Q  A  P  R  A  *  Y  T  R  L  K  T   </second_frame>
            <third_frame>   T  T  I  H  P  *  P  L  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  V  V  G  P  S  W  P  S  L  N  H  H  H  P  C  H  P  P  L  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  S  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  V  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  K  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  S  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  I  K  L  S  T  *  R  N  H  R  A  M  L  I  P  T  S  L  N  M  F  A  N  S  R  S  V  C  M  G  S  S  K  P  P  V  L  S  T  H  V  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49512" stop="48808"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HHNTPVTTTHTHNQPEPPHTHNISSPIRCGSFLAIPKSPPPVPPPTTHPMLTRGKASIFKPKTFQAIILPNTPLPDSEPTTYFVASKNAYWRHAMDDEFKALTGQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSISRYKARLVAKGYNQEYGLDYSETFSPVIRQETIRLVLSLVVCNNWLINQLDVSNAFLHGMLNKTIYMTQPPGYVDPHFPQHVCKLQKCLYGLKQAPRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="105422" PGL_stop="108193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105422" e_stop="106255"/>
            <exon e_start="107735" e_stop="108193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.969" e_score="0.901"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="105422" e_stop="106255" e_length="834"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.969">
            <gDNA_intron_boundary i_start="106256" i_stop="107734" i_length="1479"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="107735" e_stop="108193" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105422" stop="106180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105531" stop="106173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105541" stop="106255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105542" stop="106255"/>
              <exon start="107735" stop="107786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105555" stop="106255"/>
              <exon start="107735" stop="107894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105676" stop="106191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105713" stop="106255"/>
              <exon start="107735" stop="107970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107796" stop="108193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107800" stop="108193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAATATAAAAATGAAAATACTGTTGCGAAAACGGCATTTTAACGTGGGTTGGGGAATATTTGGAATTGTTATAAATAGTCAACCATGGAGATTTCCATTTATACATTTACGATAAACCAAAATAAGCAACACCAAAAATCGAAAATGAAGAAGCTTATCTTCCTAATTTTCAACATAATTATGCTTTCCATCGGCAATTGCGGTGGCCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGTAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGTATCATCGTCGGACTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGAGCGAACGGTGACCGCCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTACTGTATTGGAGATTCAGATGGTTCTGGGAATTTCTGCTACTGTCTTTTGTACTATTGGAATGATTATCAACAAGGATTTCCAG : GCGATTCCAAGGGAAGCAAGTCAATATACAATTGGAGAATCTAAATATTATATGGTACTTGTATTGTGCGCTATTATTTGGCAATTCGCGCTCATGGGTTTGGTTGGAGTTATTTTTTATTCTTCATCTTTACTCTCTGGAATTATAGGCGCTTTTTTACTTCCTGTTACTGAAGTTTTGGCCGTAATTCTGTTTCACGAAAAATTTCAAGCGGAAAAAGGAGTTGCTATTTTTCTAGCTCTATGGGGATTTGTTTCATATTTTTATGGTGAATATGAACAAGGGAAGAAGGAGAAGAAAATGAAGATGAAGAAAAATGAGAGTCAAATATCTCAACAATTAGATATGGGCCAAACAGGCGCAGGACATGTTGTGTAGTAAATTTAACGTGATTGGCCAAATATTTTATTTTATTGTACTTGTATGAAAATTAATTAATCATTAGGTGCAAAAAAAAAA</gDNA_template>
            <first_frame> K  K  Y  K  N  E  N  T  V  A  K  T  A  F  *  R  G  L  G  N  I  W  N  C  Y  K  *  S  T  M  E  I  S  I  Y  T  F  T  I  N  Q  N  K  Q  H  Q  K  S  K  M  K  K  L  I  F  L  I  F  N  I  I  M  L  S  I  G  N  C  G  G  P  L  I  S  R  L  Y  F  I  H  G  G  Q  R  I  W  I  P  S  V  L  Q  T  V  G  C  P  V  I  L  I  P  L  A  I  A  Y  F  Q  R  R  K  I  Q  G  P  E  A  K  I  V  F  I  T  R  Q  E  F  I  A  S  A  G  V  G  I  I  V  G  L  D  G  Y  L  N  S  W  G  P  A  K  L  P  V  S  T  S  T  L  I  N  A  T  Q  L  A  F  T  A  L  F  A  V  L  I  V  K  Q  K  L  T  A  Y  S  T  N  S  V  V  L  L  I  A  G  A  A  T  L  A  L  R  A  N  G  D  R  P  A  G  E  S  A  K  D  Y  M  L  G  F  V  M  T  F  V  G  A  V  L  Y  G  L  M  L  P  L  I  E  L  I  Y  M  K  S  K  Q  A  V  T  Y  I  T  V  L  E  I  Q  M  V  L  G  I  S  A  T  V  F  C  T  I  G  M  I  I  N  K  D  F  Q  :  A  I  P  R  E  A  S  Q  Y  T  I  G  E  S  K  Y  Y  M  V  L  V  L  C  A  I  I  W  Q  F  A  L  M  G  L  V  G  V  I  F  Y  S  S  S  L  L  S  G  I  I  G  A  F  L  L  P  V  T  E  V  L  A  V  I  L  F  H  E  K  F  Q  A  E  K  G  V  A  I  F  L  A  L  W  G  F  V  S  Y  F  Y  G  E  Y  E  Q  G  K  K  E  K  K  M  K  M  K  K  N  E  S  Q  I  S  Q  Q  L  D  M  G  Q  T  G  A  G  H  V  V  *  *  I  *  R  D  W  P  N  I  L  F  Y  C  T  C  M  K  I  N  *  S  L  G  A  K  K  K </first_frame>
            <second_frame>  K  N  I  K  M  K  I  L  L  R  K  R  H  F  N  V  G  W  G  I  F  G  I  V  I  N  S  Q  P  W  R  F  P  F  I  H  L  R  *  T  K  I  S  N  T  K  N  R  K  *  R  S  L  S  S  *  F  S  T  *  L  C  F  P  S  A  I  A  V  A  L  *  S  L  D  S  I  S  F  M  A  A  N  E  F  G  Y  P  A  Y  Y  K  L  L  V  V  Q  L  F  S  S  L  *  P  L  P  I  F  N  A  V  K  F  K  D  P  R  L  K  S  S  L  S  H  G  K  S  S  S  H  L  P  E  S  V  S  S  S  D  S  M  V  T  *  T  H  G  D  P  R  N  Y  P  F  Q  L  R  L  *  S  T  R  L  S  L  R  S  L  R  F  L  L  C  L  *  S  N  R  N  *  L  R  I  R  R  I  Q  S  F  C  L  S  P  E  L  R  L  *  P  S  E  R  T  V  T  A  R  P  A  S  R  R  R  I  I  C  W  G  L  *  *  R  L  L  V  R  C  Y  M  D  *  C  C  R  *  L  S  *  S  I  *  S  R  S  K  L  L  L  T  L  L  Y  W  R  F  R  W  F  W  E  F  L  L  L  S  F  V  L  L  E  *  L  S  T  R  I  S  R :   R  F  Q  G  K  Q  V  N  I  Q  L  E  N  L  N  I  I  W  Y  L  Y  C  A  L  L  F  G  N  S  R  S  W  V  W  L  E  L  F  F  I  L  H  L  Y  S  L  E  L  *  A  L  F  Y  F  L  L  L  K  F  W  P  *  F  C  F  T  K  N  F  K  R  K  K  E  L  L  F  F  *  L  Y  G  D  L  F  H  I  F  M  V  N  M  N  K  G  R  R  R  R  K  *  R  *  R  K  M  R  V  K  Y  L  N  N  *  I  W  A  K  Q  A  Q  D  M  L  C  S  K  F  N  V  I  G  Q  I  F  Y  F  I  V  L  V  *  K  L  I  N  H  *  V  Q  K  K   </second_frame>
            <third_frame>   K  I  *  K  *  K  Y  C  C  E  N  G  I  L  T  W  V  G  E  Y  L  E  L  L  *  I  V  N  H  G  D  F  H  L  Y  I  Y  D  K  P  K  *  A  T  P  K  I  E  N  E  E  A  Y  L  P  N  F  Q  H  N  Y  A  F  H  R  Q  L  R  W  P  F  N  L  S  T  L  F  H  S  W  R  P  T  N  L  D  T  Q  R  I  T  N  C  W  L  S  S  Y  S  H  P  F  S  H  C  L  F  S  T  P  *  N  S  R  T  R  G  *  N  R  L  Y  H  T  A  R  V  H  R  I  C  R  S  R  Y  H  R  R  T  R  W  L  L  K  L  M  G  T  R  E  I  T  R  F  N  F  D  S  N  Q  R  D  S  A  C  V  H  C  A  F  C  C  A  Y  S  Q  T  E  I  D  C  V  F  D  E  F  S  R  F  A  Y  R  R  S  C  D  F  S  P  P  S  E  R  *  P  P  G  R  R  V  G  E  G  L  Y  V  G  V  C  D  D  V  C  W  C  G  V  I  W  I  D  V  A  V  N  *  V  D  L  Y  E  V  E  A  S  C  Y  L  H  Y  C  I  G  D  S  D  G  S  G  N  F  C  Y  C  L  L  Y  Y  W  N  D  Y  Q  Q  G  F  P   : G  D  S  K  G  S  K  S  I  Y  N  W  R  I  *  I  L  Y  G  T  C  I  V  R  Y  Y  L  A  I  R  A  H  G  F  G  W  S  Y  F  L  F  F  I  F  T  L  W  N  Y  R  R  F  F  T  S  C  Y  *  S  F  G  R  N  S  V  S  R  K  I  S  S  G  K  R  S  C  Y  F  S  S  S  M  G  I  C  F  I  F  L  W  *  I  *  T  R  E  E  G  E  E  N  E  D  E  E  K  *  E  S  N  I  S  T  I  R  Y  G  P  N  R  R  R  T  C  C  V  V  N  L  T  *  L  A  K  Y  F  I  L  L  Y  L  Y  E  N  *  L  I  I  R  C  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105503" stop="106255"/>
                    <exon start="107735" stop="108112"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1128</number_coding_nucleotides>
                  <number_encoded_amino_acids>376</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STMEISIYTFTINQNKQHQKSKMKKLIFLIFNIIMLSIGNCGGPLISRLYFIHGGQRIWIPSVLQTVGCPVILIPLAIAYFQRRKIQGPEAKIVFITRQEFIASAGVGIIVGLDGYLNSWGPAKLPVSTSTLINATQLAFTALFAVLIVKQKLTAYSTNSVVLLIAGAATLALRANGDRPAGESAKDYMLGFVMTFVGAVLYGLMLPLIELIYMKSKQAVTYITVLEIQMVLGISATVFCTIGMIINKDFQAIPREASQYTIGESKYYMVLVLCAIIWQFALMGLVGVIFYSSSLLSGIIGAFLLPVTEVLAVILFHEKFQAEKGVAIFLALWGFVSYFYGEYEQGKKEKKMKMKKNESQISQQLDMGQTGAGHVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="112972" PGL_stop="112547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112972" e_stop="112547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="112972" e_stop="112547" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112972" stop="112547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112972" stop="112558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112956" stop="112547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTAACTCAAGTGAGGGCATTAATGTGGTGGAATTGTTGGGCTGATCCAGAAGGCTGGACTTTGTGGGCTATTCTCTGGCCTGCCCTATCCAAGCATAGAGTTGGGCTATGTAGCTAGCCCAAGCGAAGGCATAGGCTGCTTGGCTCCTAGAGTGGGGTGGATCGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTCCCGTTCTATCCAGTGGAAGGATCACGGGTTAGTGTTCATGAAGTCCAACTAAAACCTAATGGGCTGCTTCAACTAAACCACCATTTTTTGACCTTAATGTATATAATATTTTTATGGGCAACTTTCACATATAACAAACAAATAATTCACATTTGTATGCTATAGTAAAGTTTGTATAATTGCGCTCCATAGCAAACATAAAACTGTATAATTCGCTATACATAT</gDNA_template>
            <first_frame> L  V  T  Q  V  R  A  L  M  W  W  N  C  W  A  D  P  E  G  W  T  L  W  A  I  L  W  P  A  L  S  K  H  R  V  G  L  C  S  *  P  K  R  R  H  R  L  L  G  S  *  S  G  V  D  R  V  R  L  V  S  Q  S  N  E  Q  L  P  F  Y  P  V  E  G  S  R  V  S  V  H  E  V  Q  L  K  P  N  G  L  L  Q  L  N  H  H  F  L  T  L  M  Y  I  I  F  L  W  A  T  F  T  Y  N  K  Q  I  I  H  I  C  M  L  *  *  S  L  Y  N  C  A  P  *  Q  T  *  N  C  I  I  R  Y  T  Y </first_frame>
            <second_frame>  L  *  L  K  *  G  H  *  C  G  G  I  V  G  L  I  Q  K  A  G  L  C  G  L  F  S  G  L  P  Y  P  S  I  E  L  G  Y  V  A  S  P  S  E  G  I  G  C  L  A  P  R  V  G  W  I  A  *  G  W  F  H  R  A  T  N  S  S  R  S  I  Q  W  K  D  H  G  L  V  F  M  K  S  N  *  N  L  M  G  C  F  N  *  T  T  I  F  *  P  *  C  I  *  Y  F  Y  G  Q  L  S  H  I  T  N  K  *  F  T  F  V  C  Y  S  K  V  C  I  I  A  L  H  S  K  H  K  T  V  *  F  A  I  H   </second_frame>
            <third_frame>   C  N  S  S  E  G  I  N  V  V  E  L  L  G  *  S  R  R  L  D  F  V  G  Y  S  L  A  C  P  I  Q  A  *  S  W  A  M  *  L  A  Q  A  K  A  *  A  A  W  L  L  E  W  G  G  S  R  E  A  G  F  T  E  Q  R  T  A  P  V  L  S  S  G  R  I  T  G  *  C  S  *  S  P  T  K  T  *  W  A  A  S  T  K  P  P  F  F  D  L  N  V  Y  N  I  F  M  G  N  F  H  I  *  Q  T  N  N  S  H  L  Y  A  I  V  K  F  V  *  L  R  S  I  A  N  I  K  L  Y  N  S  L  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112819" stop="112607"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGVDRVRLVSQSNEQLPFYPVEGSRVSVHEVQLKPNGLLQLNHHFLTLMYIIFLWATFTYNKQIIHICML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="115664" PGL_stop="115337"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115664" e_stop="115337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="115664" e_stop="115337" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115664" stop="115337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434823" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTACACAGATAACATCTTTATTAGAAGAAAAGGGGTACAAGATACAAATATTAACAATCAAATAATACAAGAGTTTTTAGCTTTATGTATCGGCATTATTAATATATTTATATATCAACAAGAAGCTGCAGCTGGAACCATGACACGCTTCTTTTTCTTCTTATATAAGCAAAAGAGAGCAATAGCAAATGCTATGAAGAAAAGACCCCCGATTGATACACCTACAGCGATAATTGTAGTGTGTTTTCCGCCTCCCCCTGAAGGTGGGGCAACATCAATACTATTACTTGATGGTGGAGGAGGAAAGGTAGTTGAAGGAAAAGTTG</gDNA_template>
            <first_frame> L  Y  T  D  N  I  F  I  R  R  K  G  V  Q  D  T  N  I  N  N  Q  I  I  Q  E  F  L  A  L  C  I  G  I  I  N  I  F  I  Y  Q  Q  E  A  A  A  G  T  M  T  R  F  F  F  F  L  Y  K  Q  K  R  A  I  A  N  A  M  K  K  R  P  P  I  D  T  P  T  A  I  I  V  V  C  F  P  P  P  P  E  G  G  A  T  S  I  L  L  L  D  G  G  G  G  K  V  V  E  G  K  V  </first_frame>
            <second_frame>  F  T  Q  I  T  S  L  L  E  E  K  G  Y  K  I  Q  I  L  T  I  K  *  Y  K  S  F  *  L  Y  V  S  A  L  L  I  Y  L  Y  I  N  K  K  L  Q  L  E  P  *  H  A  S  F  S  S  Y  I  S  K  R  E  Q  *  Q  M  L  *  R  K  D  P  R  L  I  H  L  Q  R  *  L  *  C  V  F  R  L  P  L  K  V  G  Q  H  Q  Y  Y  Y  L  M  V  E  E  E  R  *  L  K  E  K  L </second_frame>
            <third_frame>   L  H  R  *  H  L  Y  *  K  K  R  G  T  R  Y  K  Y  *  Q  S  N  N  T  R  V  F  S  F  M  Y  R  H  Y  *  Y  I  Y  I  S  T  R  S  C  S  W  N  H  D  T  L  L  F  L  L  I  *  A  K  E  S  N  S  K  C  Y  E  E  K  T  P  D  *  Y  T  Y  S  D  N  C  S  V  F  S  A  S  P  *  R  W  G  N  I  N  T  I  T  *  W  W  R  R  K  G  S  *  R  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115664" stop="115338"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYTDNIFIRRKGVQDTNINNQIIQEFLALCIGIINIFIYQQEAAAGTMTRFFFFLYKQKRAIANAMKKRPPIDTPTAIIVVCFPPPPEGGATSILLLDGGGGKVVEGKV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="120187" PGL_stop="117573"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120187" e_stop="120135"/>
            <exon e_start="119388" e_stop="119295"/>
            <exon e_start="119210" e_stop="119078"/>
            <exon e_start="118582" e_stop="118252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120187" e_stop="120135" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.870">
            <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119388" e_stop="119295" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119210" e_stop="119078" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="118582" e_stop="118252" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120187" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120160" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120159" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120158" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120157" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120157" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120156" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120154" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119384" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119383" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119383" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119380" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119192" stop="119078"/>
              <exon start="118582" stop="118377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119178" stop="119078"/>
              <exon start="118582" stop="118265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225299" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCCGTTCGTCTTCTCCAAGCACATCCGTTGTTGTCGTCAGTCAGTCTTGCAG : GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG : CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG : GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTACTTTGCACT</gDNA_template>
            <first_frame> R  R  S  S  S  P  S  T  S  V  V  V  V  S  Q  S  C  R :   C  S  P  L  L  N  L  F  V  *  S  H  C  Q  D  A  E  R  R  R  T  K  H  G  P  L  H  P  *  E  V  :  L  C  H  *  Q  A  D  N  F  Q  G  S  C  I  C  S  A  Q  C  W  P  F  G  *  V  W  P  I  H  W  P  V  H  H  L  C  S  L  W  I  Y  S  R  P   : G  R  R  R  *  C  S  *  *  A  L  A  K  E  K  G  *  S  W  T  T  M  R  V  F  Y  L  V  L  P  F  L  K  N  E  S  F  Q  F  S  I  V  L  P  A  V  L  C  L  V  A  V  L  F  Y  V  *  S  S  L  S  D  K  W  N  L  L  V  T  I  L  V  H  L  T  *  F  S  T  V  K  R  *  L  L  E  I  T  N  M  C  C  C  F  N  E  L  A  W  F  M  S  H  F  L  R  C  Y  F  A   </first_frame>
            <second_frame>  A  V  R  L  L  Q  A  H  P  L  L  S  S  V  S  L  A   : G  V  L  H  F  *  I  Y  L  C  K  A  T  V  K  M  Q  N  D  E  G  Q  N  M  D  L  Y  I  P  R  K  C :   S  A  T  N  R  L  I  T  S  K  D  H  A  S  V  Q  L  N  V  G  H  L  D  E  S  G  R  Y  T  G  Q  F  T  T  Y  A  L  C  G  F  I  R  A  Q  :  G  D  A  D  S  A  L  D  R  L  W  Q  K  K  K  A  E  V  G  Q  Q  *  E  F  S  I  W  C  Y  H  S  *  K  M  R  V  F  N  L  V  L  Y  Y  Q  Q  F  C  V  *  W  L  F  C  F  M  F  K  V  H  Y  Q  T  N  G  T  C  L  L  L  F  *  C  I  *  L  D  F  L  P  L  K  D  N  F  W  R  *  Q  I  C  A  V  V  L  M  N  W  P  G  S  *  A  I  S  Y  V  A  T  L  H  </second_frame>
            <third_frame>   P  F  V  F  S  K  H  I  R  C  C  R  Q  S  V  L  Q  :  V  F  S  T  S  K  S  I  C  V  K  P  L  S  R  C  R  T  T  K  D  K  T  W  T  F  T  S  L  G  S   : A  L  P  L  T  G  *  *  L  P  R  I  M  H  L  F  S  S  M  L  A  I  W  M  S  L  A  D  T  L  A  S  S  P  L  M  L  S  V  D  L  F  A  P  R :   E  T  P  I  V  L  L  I  G  S  G  K  R  K  R  L  K  L  D  N  N  E  S  F  L  F  G  V  T  I  L  E  K  *  E  F  S  I  *  Y  C  I  T  S  S  S  V  F  S  G  C  S  V  L  C  L  K  F  I  I  R  Q  M  E  L  A  C  Y  Y  F  S  A  F  N  L  I  F  Y  R  *  K  I  T  F  G  D  N  K  Y  V  L  L  F  *  *  I  G  L  V  H  E  P  F  L  T  L  L  L  C  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119371" stop="119295"/>
                    <exon start="119210" stop="119078"/>
                    <exon start="118582" stop="118517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLCKATVKMQNDEGQNMDLYIPRKCSATNRLITSKDHASVQLNVGHLDESGRYTGQFTTYALCGFIRAQGDADSALDRLWQKKKAEVGQQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119187" stop="119078"/>
                    <exon start="118582" stop="118480"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPRIMHLFSSMLAIWMSLADTLASSPLMLSVDLFAPRETPIVLLIGSGKRKRLKLDNNESFLFGVTILEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="120187" e_stop="120135"/>
            <exon e_start="119388" e_stop="119295"/>
            <exon e_start="119210" e_stop="119078"/>
            <exon e_start="118582" e_stop="118257"/>
            <exon e_start="118133" e_stop="118039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120187" e_stop="120135" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.870">
            <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119388" e_stop="119295" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119210" e_stop="119078" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="118582" e_stop="118257" e_length="326"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="118256" i_stop="118134" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="0.800">
            <gDNA_exon_boundary e_start="118133" e_stop="118039" e_length="95"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120187" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120159" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120158" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120157" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120157" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120156" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120154" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118257"/>
              <exon start="118133" stop="118039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119384" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119383" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119383" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119380" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119192" stop="119078"/>
              <exon start="118582" stop="118377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119178" stop="119078"/>
              <exon start="118582" stop="118265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225299" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCCGTTCGTCTTCTCCAAGCACATCCGTTGTTGTCGTCAGTCAGTCTTGCAG : GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG : CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG : GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGCTACTTT : ACTATTCCATCCCACCTGTGTAGATACCAAGTTATTACACAGAGTTGAAAGGCTATCTTATATGCTTTTAGTACCTATTGGTGTTGCAACAAATT</gDNA_template>
            <first_frame> R  R  S  S  S  P  S  T  S  V  V  V  V  S  Q  S  C  R :   C  S  P  L  L  N  L  F  V  *  S  H  C  Q  D  A  E  R  R  R  T  K  H  G  P  L  H  P  *  E  V  :  L  C  H  *  Q  A  D  N  F  Q  G  S  C  I  C  S  A  Q  C  W  P  F  G  *  V  W  P  I  H  W  P  V  H  H  L  C  S  L  W  I  Y  S  R  P   : G  R  R  R  *  C  S  *  *  A  L  A  K  E  K  G  *  S  W  T  T  M  R  V  F  Y  L  V  L  P  F  L  K  N  E  S  F  Q  F  S  I  V  L  P  A  V  L  C  L  V  A  V  L  F  Y  V  *  S  S  L  S  D  K  W  N  L  L  V  T  I  L  V  H  L  T  *  F  S  T  V  K  R  *  L  L  E  I  T  N  M  C  C  C  F  N  E  L  A  W  F  M  S  H  F  L  R  C  Y  F  :  T  I  P  S  H  L  C  R  Y  Q  V  I  T  Q  S  *  K  A  I  L  Y  A  F  S  T  Y  W  C  C  N  K   </first_frame>
            <second_frame>  A  V  R  L  L  Q  A  H  P  L  L  S  S  V  S  L  A   : G  V  L  H  F  *  I  Y  L  C  K  A  T  V  K  M  Q  N  D  E  G  Q  N  M  D  L  Y  I  P  R  K  C :   S  A  T  N  R  L  I  T  S  K  D  H  A  S  V  Q  L  N  V  G  H  L  D  E  S  G  R  Y  T  G  Q  F  T  T  Y  A  L  C  G  F  I  R  A  Q  :  G  D  A  D  S  A  L  D  R  L  W  Q  K  K  K  A  E  V  G  Q  Q  *  E  F  S  I  W  C  Y  H  S  *  K  M  R  V  F  N  L  V  L  Y  Y  Q  Q  F  C  V  *  W  L  F  C  F  M  F  K  V  H  Y  Q  T  N  G  T  C  L  L  L  F  *  C  I  *  L  D  F  L  P  L  K  D  N  F  W  R  *  Q  I  C  A  V  V  L  M  N  W  P  G  S  *  A  I  S  Y  V  A  T  L :   L  F  H  P  T  C  V  D  T  K  L  L  H  R  V  E  R  L  S  Y  M  L  L  V  P  I  G  V  A  T  N  </second_frame>
            <third_frame>   P  F  V  F  S  K  H  I  R  C  C  R  Q  S  V  L  Q  :  V  F  S  T  S  K  S  I  C  V  K  P  L  S  R  C  R  T  T  K  D  K  T  W  T  F  T  S  L  G  S   : A  L  P  L  T  G  *  *  L  P  R  I  M  H  L  F  S  S  M  L  A  I  W  M  S  L  A  D  T  L  A  S  S  P  L  M  L  S  V  D  L  F  A  P  R :   E  T  P  I  V  L  L  I  G  S  G  K  R  K  R  L  K  L  D  N  N  E  S  F  L  F  G  V  T  I  L  E  K  *  E  F  S  I  *  Y  C  I  T  S  S  S  V  F  S  G  C  S  V  L  C  L  K  F  I  I  R  Q  M  E  L  A  C  Y  Y  F  S  A  F  N  L  I  F  Y  R  *  K  I  T  F  G  D  N  K  Y  V  L  L  F  *  *  I  G  L  V  H  E  P  F  L  T  L  L  L   : Y  Y  S  I  P  P  V  *  I  P  S  Y  Y  T  E  L  K  G  Y  L  I  C  F  *  Y  L  L  V  L  Q  Q  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119371" stop="119295"/>
                    <exon start="119210" stop="119078"/>
                    <exon start="118582" stop="118517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLCKATVKMQNDEGQNMDLYIPRKCSATNRLITSKDHASVQLNVGHLDESGRYTGQFTTYALCGFIRAQGDADSALDRLWQKKKAEVGQQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119187" stop="119078"/>
                    <exon start="118582" stop="118480"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPRIMHLFSSMLAIWMSLADTLASSPLMLSVDLFAPRETPIVLLIGSGKRKRLKLDNNESFLFGVTILEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="120159" e_stop="120135"/>
            <exon e_start="119388" e_stop="119295"/>
            <exon e_start="119210" e_stop="119078"/>
            <exon e_start="118582" e_stop="118297"/>
            <exon e_start="118176" e_stop="118170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.965" e_score="0.992"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120159" e_stop="120135" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.870">
            <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119388" e_stop="119295" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119210" e_stop="119078" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="118582" e_stop="118297" e_length="286"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="118296" i_stop="118177" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="0.714">
            <gDNA_exon_boundary e_start="118176" e_stop="118170" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120159" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120158" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120157" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120156" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120152" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118297"/>
              <exon start="118176" stop="118170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119380" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119192" stop="119078"/>
              <exon start="118582" stop="118377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTGTCGTCAGTCAGTCTTGCAG : GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG : CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG : GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGA : TAAGAAA</gDNA_template>
            <first_frame> L  L  S  S  V  S  L  A   : G  V  L  H  F  *  I  Y  L  C  K  A  T  V  K  M  Q  N  D  E  G  Q  N  M  D  L  Y  I  P  R  K  C :   S  A  T  N  R  L  I  T  S  K  D  H  A  S  V  Q  L  N  V  G  H  L  D  E  S  G  R  Y  T  G  Q  F  T  T  Y  A  L  C  G  F  I  R  A  Q  :  G  D  A  D  S  A  L  D  R  L  W  Q  K  K  K  A  E  V  G  Q  Q  *  E  F  S  I  W  C  Y  H  S  *  K  M  R  V  F  N  L  V  L  Y  Y  Q  Q  F  C  V  *  W  L  F  C  F  M  F  K  V  H  Y  Q  T  N  G  T  C  L  L  L  F  *  C  I  *  L  D  F  L  P  L  K  D  N  F  W  R  *  Q  I  C  A  V  V  L  M   : I  R   </first_frame>
            <second_frame>  C  C  R  Q  S  V  L  Q  :  V  F  S  T  S  K  S  I  C  V  K  P  L  S  R  C  R  T  T  K  D  K  T  W  T  F  T  S  L  G  S   : A  L  P  L  T  G  *  *  L  P  R  I  M  H  L  F  S  S  M  L  A  I  W  M  S  L  A  D  T  L  A  S  S  P  L  M  L  S  V  D  L  F  A  P  R :   E  T  P  I  V  L  L  I  G  S  G  K  R  K  R  L  K  L  D  N  N  E  S  F  L  F  G  V  T  I  L  E  K  *  E  F  S  I  *  Y  C  I  T  S  S  S  V  F  S  G  C  S  V  L  C  L  K  F  I  I  R  Q  M  E  L  A  C  Y  Y  F  S  A  F  N  L  I  F  Y  R  *  K  I  T  F  G  D  N  K  Y  V  L  L  F  *  *  :  *  E  </second_frame>
            <third_frame>   V  V  V  S  Q  S  C  R :   C  S  P  L  L  N  L  F  V  *  S  H  C  Q  D  A  E  R  R  R  T  K  H  G  P  L  H  P  *  E  V  :  L  C  H  *  Q  A  D  N  F  Q  G  S  C  I  C  S  A  Q  C  W  P  F  G  *  V  W  P  I  H  W  P  V  H  H  L  C  S  L  W  I  Y  S  R  P   : G  R  R  R  *  C  S  *  *  A  L  A  K  E  K  G  *  S  W  T  T  M  R  V  F  Y  L  V  L  P  F  L  K  N  E  S  F  Q  F  S  I  V  L  P  A  V  L  C  L  V  A  V  L  F  Y  V  *  S  S  L  S  D  K  W  N  L  L  V  T  I  L  V  H  L  T  *  F  S  T  V  K  R  *  L  L  E  I  T  N  M  C  C  C  F  N  D :   K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119371" stop="119295"/>
                    <exon start="119210" stop="119078"/>
                    <exon start="118582" stop="118517"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLCKATVKMQNDEGQNMDLYIPRKCSATNRLITSKDHASVQLNVGHLDESGRYTGQFTTYALCGFIRAQGDADSALDRLWQKKKAEVGQQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119187" stop="119078"/>
                    <exon start="118582" stop="118480"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPRIMHLFSSMLAIWMSLADTLASSPLMLSVDLFAPRETPIVLLIGSGKRKRLKLDNNESFLFGVTILEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="120169" e_stop="120135"/>
            <exon e_start="119388" e_stop="119295"/>
            <exon e_start="119210" e_stop="119078"/>
            <exon e_start="118582" e_stop="118310"/>
            <exon e_start="118176" e_stop="118165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.965" e_score="0.996"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120169" e_stop="120135" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.870">
            <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119388" e_stop="119295" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119210" e_stop="119078" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="118582" e_stop="118310" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="118309" i_stop="118177" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="0.500">
            <gDNA_exon_boundary e_start="118176" e_stop="118165" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120169" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118310"/>
              <exon start="118176" stop="118165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120159" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120158" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120157" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120156" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119380" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119192" stop="119078"/>
              <exon start="118582" stop="118377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCACATCCGTTGTTGTCGTCAGTCAGTCTTGCAG : GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG : CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG : GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCT : TAAGAAATGATG</gDNA_template>
            <first_frame> S  T  S  V  V  V  V  S  Q  S  C  R :   C  S  P  L  L  N  L  F  V  *  S  H  C  Q  D  A  E  R  R  R  T  K  H  G  P  L  H  P  *  E  V  :  L  C  H  *  Q  A  D  N  F  Q  G  S  C  I  C  S  A  Q  C  W  P  F  G  *  V  W  P  I  H  W  P  V  H  H  L  C  S  L  W  I  Y  S  R  P   : G  R  R  R  *  C  S  *  *  A  L  A  K  E  K  G  *  S  W  T  T  M  R  V  F  Y  L  V  L  P  F  L  K  N  E  S  F  Q  F  S  I  V  L  P  A  V  L  C  L  V  A  V  L  F  Y  V  *  S  S  L  S  D  K  W  N  L  L  V  T  I  L  V  H  L  T  *  F  S  T  V  K  R  *  L  L  E  I  T  N  M  C   : L  R  N  D  </first_frame>
            <second_frame>  A  H  P  L  L  S  S  V  S  L  A   : G  V  L  H  F  *  I  Y  L  C  K  A  T  V  K  M  Q  N  D  E  G  Q  N  M  D  L  Y  I  P  R  K  C :   S  A  T  N  R  L  I  T  S  K  D  H  A  S  V  Q  L  N  V  G  H  L  D  E  S  G  R  Y  T  G  Q  F  T  T  Y  A  L  C  G  F  I  R  A  Q  :  G  D  A  D  S  A  L  D  R  L  W  Q  K  K  K  A  E  V  G  Q  Q  *  E  F  S  I  W  C  Y  H  S  *  K  M  R  V  F  N  L  V  L  Y  Y  Q  Q  F  C  V  *  W  L  F  C  F  M  F  K  V  H  Y  Q  T  N  G  T  C  L  L  L  F  *  C  I  *  L  D  F  L  P  L  K  D  N  F  W  R  *  Q  I  C  A  :  *  E  M  M </second_frame>
            <third_frame>   H  I  R  C  C  R  Q  S  V  L  Q  :  V  F  S  T  S  K  S  I  C  V  K  P  L  S  R  C  R  T  T  K  D  K  T  W  T  F  T  S  L  G  S   : A  L  P  L  T  G  *  *  L  P  R  I  M  H  L  F  S  S  M  L  A  I  W  M  S  L  A  D  T  L  A  S  S  P  L  M  L  S  V  D  L  F  A  P  R :   E  T  P  I  V  L  L  I  G  S  G  K  R  K  R  L  K  L  D  N  N  E  S  F  L  F  G  V  T  I  L  E  K  *  E  F  S  I  *  Y  C  I  T  S  S  S  V  F  S  G  C  S  V  L  C  L  K  F  I  I  R  Q  M  E  L  A  C  Y  Y  F  S  A  F  N  L  I  F  Y  R  *  K  I  T  F  G  D  N  K  Y  V  L :   K  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119371" stop="119295"/>
                    <exon start="119210" stop="119078"/>
                    <exon start="118582" stop="118517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLCKATVKMQNDEGQNMDLYIPRKCSATNRLITSKDHASVQLNVGHLDESGRYTGQFTTYALCGFIRAQGDADSALDRLWQKKKAEVGQQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119187" stop="119078"/>
                    <exon start="118582" stop="118480"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPRIMHLFSSMLAIWMSLADTLASSPLMLSVDLFAPRETPIVLLIGSGKRKRLKLDNNESFLFGVTILEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="120179" e_stop="120135"/>
            <exon e_start="119388" e_stop="119295"/>
            <exon e_start="119210" e_stop="119078"/>
            <exon e_start="118582" e_stop="118297"/>
            <exon e_start="117623" e_stop="117573"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="0.588"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120179" e_stop="120135" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.870">
            <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119388" e_stop="119295" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119210" e_stop="119078" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="118582" e_stop="118297" e_length="286"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="118296" i_stop="117624" i_length="673"/>
          </intron>
          <exon e_serial="5" e_score="0.588">
            <gDNA_exon_boundary e_start="117623" e_stop="117573" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120179" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118297"/>
              <exon start="117623" stop="117573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120159" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120158" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120157" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120156" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119380" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119192" stop="119078"/>
              <exon start="118582" stop="118377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTTCTCCAAGCACATCCGTTGTTGTCGTCAGTCAGTCTTGCAG : GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG : CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG : GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGA : ATATAATAAATATCAAGAATTCTTATAAAAATGACAATCAAGCAAAAGAAA</gDNA_template>
            <first_frame> V  F  S  K  H  I  R  C  C  R  Q  S  V  L  Q  :  V  F  S  T  S  K  S  I  C  V  K  P  L  S  R  C  R  T  T  K  D  K  T  W  T  F  T  S  L  G  S   : A  L  P  L  T  G  *  *  L  P  R  I  M  H  L  F  S  S  M  L  A  I  W  M  S  L  A  D  T  L  A  S  S  P  L  M  L  S  V  D  L  F  A  P  R :   E  T  P  I  V  L  L  I  G  S  G  K  R  K  R  L  K  L  D  N  N  E  S  F  L  F  G  V  T  I  L  E  K  *  E  F  S  I  *  Y  C  I  T  S  S  S  V  F  S  G  C  S  V  L  C  L  K  F  I  I  R  Q  M  E  L  A  C  Y  Y  F  S  A  F  N  L  I  F  Y  R  *  K  I  T  F  G  D  N  K  Y  V  L  L  F  *  *  :  I  *  *  I  S  R  I  L  I  K  M  T  I  K  Q  K  K </first_frame>
            <second_frame>  S  S  P  S  T  S  V  V  V  V  S  Q  S  C  R :   C  S  P  L  L  N  L  F  V  *  S  H  C  Q  D  A  E  R  R  R  T  K  H  G  P  L  H  P  *  E  V  :  L  C  H  *  Q  A  D  N  F  Q  G  S  C  I  C  S  A  Q  C  W  P  F  G  *  V  W  P  I  H  W  P  V  H  H  L  C  S  L  W  I  Y  S  R  P   : G  R  R  R  *  C  S  *  *  A  L  A  K  E  K  G  *  S  W  T  T  M  R  V  F  Y  L  V  L  P  F  L  K  N  E  S  F  Q  F  S  I  V  L  P  A  V  L  C  L  V  A  V  L  F  Y  V  *  S  S  L  S  D  K  W  N  L  L  V  T  I  L  V  H  L  T  *  F  S  T  V  K  R  *  L  L  E  I  T  N  M  C  C  C  F  N  E :   Y  N  K  Y  Q  E  F  L  *  K  *  Q  S  S  K  R   </second_frame>
            <third_frame>   L  L  Q  A  H  P  L  L  S  S  V  S  L  A   : G  V  L  H  F  *  I  Y  L  C  K  A  T  V  K  M  Q  N  D  E  G  Q  N  M  D  L  Y  I  P  R  K  C :   S  A  T  N  R  L  I  T  S  K  D  H  A  S  V  Q  L  N  V  G  H  L  D  E  S  G  R  Y  T  G  Q  F  T  T  Y  A  L  C  G  F  I  R  A  Q  :  G  D  A  D  S  A  L  D  R  L  W  Q  K  K  K  A  E  V  G  Q  Q  *  E  F  S  I  W  C  Y  H  S  *  K  M  R  V  F  N  L  V  L  Y  Y  Q  Q  F  C  V  *  W  L  F  C  F  M  F  K  V  H  Y  Q  T  N  G  T  C  L  L  L  F  *  C  I  *  L  D  F  L  P  L  K  D  N  F  W  R  *  Q  I  C  A  V  V  L  M   : N  I  I  N  I  K  N  S  Y  K  N  D  N  Q  A  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119371" stop="119295"/>
                    <exon start="119210" stop="119078"/>
                    <exon start="118582" stop="118517"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLCKATVKMQNDEGQNMDLYIPRKCSATNRLITSKDHASVQLNVGHLDESGRYTGQFTTYALCGFIRAQGDADSALDRLWQKKKAEVGQQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119187" stop="119078"/>
                    <exon start="118582" stop="118480"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPRIMHLFSSMLAIWMSLADTLASSPLMLSVDLFAPRETPIVLLIGSGKRKRLKLDNNESFLFGVTILEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="120158" e_stop="120135"/>
            <exon e_start="119388" e_stop="119295"/>
            <exon e_start="119210" e_stop="119078"/>
            <exon e_start="118582" e_stop="118315"/>
            <exon e_start="118176" e_stop="118168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.965" e_score="0.996"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120158" e_stop="120135" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.870">
            <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119388" e_stop="119295" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119210" e_stop="119078" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="118582" e_stop="118315" e_length="268"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="118314" i_stop="118177" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="0.714">
            <gDNA_exon_boundary e_start="118176" e_stop="118168" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120158" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120156" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118315"/>
              <exon start="118176" stop="118168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118315"/>
              <exon start="118176" stop="118170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119380" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119192" stop="119078"/>
              <exon start="118582" stop="118377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTGTCGTCAGTCAGTCTTGCAG : GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG : CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG : GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATAT : TAAGAAATG</gDNA_template>
            <first_frame> C  C  R  Q  S  V  L  Q  :  V  F  S  T  S  K  S  I  C  V  K  P  L  S  R  C  R  T  T  K  D  K  T  W  T  F  T  S  L  G  S   : A  L  P  L  T  G  *  *  L  P  R  I  M  H  L  F  S  S  M  L  A  I  W  M  S  L  A  D  T  L  A  S  S  P  L  M  L  S  V  D  L  F  A  P  R :   E  T  P  I  V  L  L  I  G  S  G  K  R  K  R  L  K  L  D  N  N  E  S  F  L  F  G  V  T  I  L  E  K  *  E  F  S  I  *  Y  C  I  T  S  S  S  V  F  S  G  C  S  V  L  C  L  K  F  I  I  R  Q  M  E  L  A  C  Y  Y  F  S  A  F  N  L  I  F  Y  R  *  K  I  T  F  G  D  N  K  Y  :  *  E  M </first_frame>
            <second_frame>  V  V  V  S  Q  S  C  R :   C  S  P  L  L  N  L  F  V  *  S  H  C  Q  D  A  E  R  R  R  T  K  H  G  P  L  H  P  *  E  V  :  L  C  H  *  Q  A  D  N  F  Q  G  S  C  I  C  S  A  Q  C  W  P  F  G  *  V  W  P  I  H  W  P  V  H  H  L  C  S  L  W  I  Y  S  R  P   : G  R  R  R  *  C  S  *  *  A  L  A  K  E  K  G  *  S  W  T  T  M  R  V  F  Y  L  V  L  P  F  L  K  N  E  S  F  Q  F  S  I  V  L  P  A  V  L  C  L  V  A  V  L  F  Y  V  *  S  S  L  S  D  K  W  N  L  L  V  T  I  L  V  H  L  T  *  F  S  T  V  K  R  *  L  L  E  I  T  N  I :   K  K   </second_frame>
            <third_frame>   L  S  S  V  S  L  A   : G  V  L  H  F  *  I  Y  L  C  K  A  T  V  K  M  Q  N  D  E  G  Q  N  M  D  L  Y  I  P  R  K  C :   S  A  T  N  R  L  I  T  S  K  D  H  A  S  V  Q  L  N  V  G  H  L  D  E  S  G  R  Y  T  G  Q  F  T  T  Y  A  L  C  G  F  I  R  A  Q  :  G  D  A  D  S  A  L  D  R  L  W  Q  K  K  K  A  E  V  G  Q  Q  *  E  F  S  I  W  C  Y  H  S  *  K  M  R  V  F  N  L  V  L  Y  Y  Q  Q  F  C  V  *  W  L  F  C  F  M  F  K  V  H  Y  Q  T  N  G  T  C  L  L  L  F  *  C  I  *  L  D  F  L  P  L  K  D  N  F  W  R  *  Q  I   : L  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119371" stop="119295"/>
                    <exon start="119210" stop="119078"/>
                    <exon start="118582" stop="118517"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLCKATVKMQNDEGQNMDLYIPRKCSATNRLITSKDHASVQLNVGHLDESGRYTGQFTTYALCGFIRAQGDADSALDRLWQKKKAEVGQQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119187" stop="119078"/>
                    <exon start="118582" stop="118480"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPRIMHLFSSMLAIWMSLADTLASSPLMLSVDLFAPRETPIVLLIGSGKRKRLKLDNNESFLFGVTILEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="120158" e_stop="120135"/>
            <exon e_start="119388" e_stop="119295"/>
            <exon e_start="119210" e_stop="119078"/>
            <exon e_start="118582" e_stop="118316"/>
            <exon e_start="118176" e_stop="118170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.965" e_score="0.996"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120158" e_stop="120135" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.870">
            <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119388" e_stop="119295" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119210" e_stop="119078" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="118582" e_stop="118316" e_length="267"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="118315" i_stop="118177" i_length="139"/>
          </intron>
          <exon e_serial="5" e_score="0.857">
            <gDNA_exon_boundary e_start="118176" e_stop="118170" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120158" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120156" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119380" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119192" stop="119078"/>
              <exon start="118582" stop="118377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119187" stop="119078"/>
              <exon start="118582" stop="118316"/>
              <exon start="118176" stop="118170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564537" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTGTCGTCAGTCAGTCTTGCAG : GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG : CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG : GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATA : TAAGAAA</gDNA_template>
            <first_frame> C  C  R  Q  S  V  L  Q  :  V  F  S  T  S  K  S  I  C  V  K  P  L  S  R  C  R  T  T  K  D  K  T  W  T  F  T  S  L  G  S   : A  L  P  L  T  G  *  *  L  P  R  I  M  H  L  F  S  S  M  L  A  I  W  M  S  L  A  D  T  L  A  S  S  P  L  M  L  S  V  D  L  F  A  P  R :   E  T  P  I  V  L  L  I  G  S  G  K  R  K  R  L  K  L  D  N  N  E  S  F  L  F  G  V  T  I  L  E  K  *  E  F  S  I  *  Y  C  I  T  S  S  S  V  F  S  G  C  S  V  L  C  L  K  F  I  I  R  Q  M  E  L  A  C  Y  Y  F  S  A  F  N  L  I  F  Y  R  *  K  I  T  F  G  D  N  K  Y :   K  K </first_frame>
            <second_frame>  V  V  V  S  Q  S  C  R :   C  S  P  L  L  N  L  F  V  *  S  H  C  Q  D  A  E  R  R  R  T  K  H  G  P  L  H  P  *  E  V  :  L  C  H  *  Q  A  D  N  F  Q  G  S  C  I  C  S  A  Q  C  W  P  F  G  *  V  W  P  I  H  W  P  V  H  H  L  C  S  L  W  I  Y  S  R  P   : G  R  R  R  *  C  S  *  *  A  L  A  K  E  K  G  *  S  W  T  T  M  R  V  F  Y  L  V  L  P  F  L  K  N  E  S  F  Q  F  S  I  V  L  P  A  V  L  C  L  V  A  V  L  F  Y  V  *  S  S  L  S  D  K  W  N  L  L  V  T  I  L  V  H  L  T  *  F  S  T  V  K  R  *  L  L  E  I  T  N   : I  R   </second_frame>
            <third_frame>   L  S  S  V  S  L  A   : G  V  L  H  F  *  I  Y  L  C  K  A  T  V  K  M  Q  N  D  E  G  Q  N  M  D  L  Y  I  P  R  K  C :   S  A  T  N  R  L  I  T  S  K  D  H  A  S  V  Q  L  N  V  G  H  L  D  E  S  G  R  Y  T  G  Q  F  T  T  Y  A  L  C  G  F  I  R  A  Q  :  G  D  A  D  S  A  L  D  R  L  W  Q  K  K  K  A  E  V  G  Q  Q  *  E  F  S  I  W  C  Y  H  S  *  K  M  R  V  F  N  L  V  L  Y  Y  Q  Q  F  C  V  *  W  L  F  C  F  M  F  K  V  H  Y  Q  T  N  G  T  C  L  L  L  F  *  C  I  *  L  D  F  L  P  L  K  D  N  F  W  R  *  Q  I  :  *  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119371" stop="119295"/>
                    <exon start="119210" stop="119078"/>
                    <exon start="118582" stop="118517"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLCKATVKMQNDEGQNMDLYIPRKCSATNRLITSKDHASVQLNVGHLDESGRYTGQFTTYALCGFIRAQGDADSALDRLWQKKKAEVGQQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119187" stop="119078"/>
                    <exon start="118582" stop="118480"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPRIMHLFSSMLAIWMSLADTLASSPLMLSVDLFAPRETPIVLLIGSGKRKRLKLDNNESFLFGVTILEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="119392" e_stop="119295"/>
            <exon e_start="119210" e_stop="119078"/>
            <exon e_start="118582" e_stop="118315"/>
            <exon e_start="118176" e_stop="118165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.965" e_score="0.996"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119392" e_stop="119295" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119210" e_stop="119078" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="118582" e_stop="118315" e_length="268"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="118314" i_stop="118177" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="0.714">
            <gDNA_exon_boundary e_start="118176" e_stop="118165" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119392" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118315"/>
              <exon start="118176" stop="118165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119390" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118315"/>
              <exon start="118176" stop="118170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118315"/>
              <exon start="118176" stop="118168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118315"/>
              <exon start="118176" stop="118170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119380" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119192" stop="119078"/>
              <exon start="118582" stop="118377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG : CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG : GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATAT : TAAGAAATGATG</gDNA_template>
            <first_frame> P  G  V  L  H  F  *  I  Y  L  C  K  A  T  V  K  M  Q  N  D  E  G  Q  N  M  D  L  Y  I  P  R  K  C :   S  A  T  N  R  L  I  T  S  K  D  H  A  S  V  Q  L  N  V  G  H  L  D  E  S  G  R  Y  T  G  Q  F  T  T  Y  A  L  C  G  F  I  R  A  Q  :  G  D  A  D  S  A  L  D  R  L  W  Q  K  K  K  A  E  V  G  Q  Q  *  E  F  S  I  W  C  Y  H  S  *  K  M  R  V  F  N  L  V  L  Y  Y  Q  Q  F  C  V  *  W  L  F  C  F  M  F  K  V  H  Y  Q  T  N  G  T  C  L  L  L  F  *  C  I  *  L  D  F  L  P  L  K  D  N  F  W  R  *  Q  I   : L  R  N  D  </first_frame>
            <second_frame>  Q  V  F  S  T  S  K  S  I  C  V  K  P  L  S  R  C  R  T  T  K  D  K  T  W  T  F  T  S  L  G  S   : A  L  P  L  T  G  *  *  L  P  R  I  M  H  L  F  S  S  M  L  A  I  W  M  S  L  A  D  T  L  A  S  S  P  L  M  L  S  V  D  L  F  A  P  R :   E  T  P  I  V  L  L  I  G  S  G  K  R  K  R  L  K  L  D  N  N  E  S  F  L  F  G  V  T  I  L  E  K  *  E  F  S  I  *  Y  C  I  T  S  S  S  V  F  S  G  C  S  V  L  C  L  K  F  I  I  R  Q  M  E  L  A  C  Y  Y  F  S  A  F  N  L  I  F  Y  R  *  K  I  T  F  G  D  N  K  Y  :  *  E  M  M </second_frame>
            <third_frame>   R  C  S  P  L  L  N  L  F  V  *  S  H  C  Q  D  A  E  R  R  R  T  K  H  G  P  L  H  P  *  E  V  :  L  C  H  *  Q  A  D  N  F  Q  G  S  C  I  C  S  A  Q  C  W  P  F  G  *  V  W  P  I  H  W  P  V  H  H  L  C  S  L  W  I  Y  S  R  P   : G  R  R  R  *  C  S  *  *  A  L  A  K  E  K  G  *  S  W  T  T  M  R  V  F  Y  L  V  L  P  F  L  K  N  E  S  F  Q  F  S  I  V  L  P  A  V  L  C  L  V  A  V  L  F  Y  V  *  S  S  L  S  D  K  W  N  L  L  V  T  I  L  V  H  L  T  *  F  S  T  V  K  R  *  L  L  E  I  T  N  I :   K  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119371" stop="119295"/>
                    <exon start="119210" stop="119078"/>
                    <exon start="118582" stop="118517"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLCKATVKMQNDEGQNMDLYIPRKCSATNRLITSKDHASVQLNVGHLDESGRYTGQFTTYALCGFIRAQGDADSALDRLWQKKKAEVGQQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="8" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119187" stop="119078"/>
                    <exon start="118582" stop="118480"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPRIMHLFSSMLAIWMSLADTLASSPLMLSVDLFAPRETPIVLLIGSGKRKRLKLDNNESFLFGVTILEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="119394" e_stop="119295"/>
            <exon e_start="119210" e_stop="119078"/>
            <exon e_start="118582" e_stop="118317"/>
            <exon e_start="118176" e_stop="118170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.965" e_score="0.996"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119394" e_stop="119295" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119210" e_stop="119078" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="118582" e_stop="118317" e_length="266"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="118316" i_stop="118177" i_length="140"/>
          </intron>
          <exon e_serial="4" e_score="0.714">
            <gDNA_exon_boundary e_start="118176" e_stop="118170" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119394" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118317"/>
              <exon start="118176" stop="118170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119380" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119192" stop="119078"/>
              <exon start="118582" stop="118377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG : CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG : GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAAT : TAAGAAA</gDNA_template>
            <first_frame> I  Q  V  F  S  T  S  K  S  I  C  V  K  P  L  S  R  C  R  T  T  K  D  K  T  W  T  F  T  S  L  G  S   : A  L  P  L  T  G  *  *  L  P  R  I  M  H  L  F  S  S  M  L  A  I  W  M  S  L  A  D  T  L  A  S  S  P  L  M  L  S  V  D  L  F  A  P  R :   E  T  P  I  V  L  L  I  G  S  G  K  R  K  R  L  K  L  D  N  N  E  S  F  L  F  G  V  T  I  L  E  K  *  E  F  S  I  *  Y  C  I  T  S  S  S  V  F  S  G  C  S  V  L  C  L  K  F  I  I  R  Q  M  E  L  A  C  Y  Y  F  S  A  F  N  L  I  F  Y  R  *  K  I  T  F  G  D  N  K   : L  R   </first_frame>
            <second_frame>  S  R  C  S  P  L  L  N  L  F  V  *  S  H  C  Q  D  A  E  R  R  R  T  K  H  G  P  L  H  P  *  E  V  :  L  C  H  *  Q  A  D  N  F  Q  G  S  C  I  C  S  A  Q  C  W  P  F  G  *  V  W  P  I  H  W  P  V  H  H  L  C  S  L  W  I  Y  S  R  P   : G  R  R  R  *  C  S  *  *  A  L  A  K  E  K  G  *  S  W  T  T  M  R  V  F  Y  L  V  L  P  F  L  K  N  E  S  F  Q  F  S  I  V  L  P  A  V  L  C  L  V  A  V  L  F  Y  V  *  S  S  L  S  D  K  W  N  L  L  V  T  I  L  V  H  L  T  *  F  S  T  V  K  R  *  L  L  E  I  T  N  :  *  E  </second_frame>
            <third_frame>   P  G  V  L  H  F  *  I  Y  L  C  K  A  T  V  K  M  Q  N  D  E  G  Q  N  M  D  L  Y  I  P  R  K  C :   S  A  T  N  R  L  I  T  S  K  D  H  A  S  V  Q  L  N  V  G  H  L  D  E  S  G  R  Y  T  G  Q  F  T  T  Y  A  L  C  G  F  I  R  A  Q  :  G  D  A  D  S  A  L  D  R  L  W  Q  K  K  K  A  E  V  G  Q  Q  *  E  F  S  I  W  C  Y  H  S  *  K  M  R  V  F  N  L  V  L  Y  Y  Q  Q  F  C  V  *  W  L  F  C  F  M  F  K  V  H  Y  Q  T  N  G  T  C  L  L  L  F  *  C  I  *  L  D  F  L  P  L  K  D  N  F  W  R  *  Q  I :   K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119371" stop="119295"/>
                    <exon start="119210" stop="119078"/>
                    <exon start="118582" stop="118517"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLCKATVKMQNDEGQNMDLYIPRKCSATNRLITSKDHASVQLNVGHLDESGRYTGQFTTYALCGFIRAQGDADSALDRLWQKKKAEVGQQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="9" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119187" stop="119078"/>
                    <exon start="118582" stop="118480"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPRIMHLFSSMLAIWMSLADTLASSPLMLSVDLFAPRETPIVLLIGSGKRKRLKLDNNESFLFGVTILEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="121893" PGL_stop="121067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121893" e_stop="121067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="121893" e_stop="121067" e_length="827"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121893" stop="121067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736760" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGGAAAGTGACAGAATGTTTGAGTTTTGCAGTCATCATTTCAATGACATTAGAGTAATTCTCTTGGTAAAGAGAAGCTCGTCGAGTTTGGGACCTTGCCGATAAGGAGAAATCAAAAGGGGATGAATACTGGATATGGAAAAGGATGACAACTAGAAACAAGGTGAAAAAAGAGATGGTGATGAATTTGGTGGTTAACATTTTGGTCTTATTTCGAGTGCATGACTTGGATTGATGTTCCATTTTCATCGAGTTAATAAGCATCAAAATACTATTTCTCTGGTTTTTAGGAGCAAATTGAATGTCAAGATTGAAAGTTAAAATCTTTATATATTATATAAAAACCAGCTGACATAAAACATAGGTAGTAATGAGGCCTGAGGGATTCCTTGTCAATAGTTTCCATGTTTACAGATGTATGCTTAGTGAATATTTTAGTTGATAGAAGTGTGTAAGGTCAGAGATGGAGCCATGTTTTGCGTTAAACTTTGTTGTTTTTGGTACTTTTTTCCTAGTTTTGTCAACCTTCCATTAAATTCTTCACAGCCAAAAAAGATATTTTATACACTTGGGCTGCATTTACCTTCCCTGGCACCTTGTCGAGATCTCCTTGGAGTATCTCAAAATATTACATTCATTTAAAAAAAAAAGTACAATACACAATAATACGACATAATACAATATAATATATTACGAAATAATATACCTCCAAACAAAGTGTTACAGGGCGTTTGGTAAATTATATAAGTAAAATTATTGCATACATTAACTCTATGTATTAGTAGTACCTTATTTGGCATACTTTTTCATGCTATATATAAATTAT</gDNA_template>
            <first_frame> G  G  K  *  Q  N  V  *  V  L  Q  S  S  F  Q  *  H  *  S  N  S  L  G  K  E  K  L  V  E  F  G  T  L  P  I  R  R  N  Q  K  G  M  N  T  G  Y  G  K  G  *  Q  L  E  T  R  *  K  K  R  W  *  *  I  W  W  L  T  F  W  S  Y  F  E  C  M  T  W  I  D  V  P  F  S  S  S  *  *  A  S  K  Y  Y  F  S  G  F  *  E  Q  I  E  C  Q  D  *  K  L  K  S  L  Y  I  I  *  K  P  A  D  I  K  H  R  *  *  *  G  L  R  D  S  L  S  I  V  S  M  F  T  D  V  C  L  V  N  I  L  V  D  R  S  V  *  G  Q  R  W  S  H  V  L  R  *  T  L  L  F  L  V  L  F  S  *  F  C  Q  P  S  I  K  F  F  T  A  K  K  D  I  L  Y  T  W  A  A  F  T  F  P  G  T  L  S  R  S  P  W  S  I  S  K  Y  Y  I  H  L  K  K  K  V  Q  Y  T  I  I  R  H  N  T  I  *  Y  I  T  K  *  Y  T  S  K  Q  S  V  T  G  R  L  V  N  Y  I  S  K  I  I  A  Y  I  N  S  M  Y  *  *  Y  L  I  W  H  T  F  S  C  Y  I  *  I   </first_frame>
            <second_frame>  E  E  S  D  R  M  F  E  F  C  S  H  H  F  N  D  I  R  V  I  L  L  V  K  R  S  S  S  S  L  G  P  C  R  *  G  E  I  K  R  G  *  I  L  D  M  E  K  D  D  N  *  K  Q  G  E  K  R  D  G  D  E  F  G  G  *  H  F  G  L  I  S  S  A  *  L  G  L  M  F  H  F  H  R  V  N  K  H  Q  N  T  I  S  L  V  F  R  S  K  L  N  V  K  I  E  S  *  N  L  Y  I  L  Y  K  N  Q  L  T  *  N  I  G  S  N  E  A  *  G  I  P  C  Q  *  F  P  C  L  Q  M  Y  A  *  *  I  F  *  L  I  E  V  C  K  V  R  D  G  A  M  F  C  V  K  L  C  C  F  W  Y  F  F  P  S  F  V  N  L  P  L  N  S  S  Q  P  K  K  I  F  Y  T  L  G  L  H  L  P  S  L  A  P  C  R  D  L  L  G  V  S  Q  N  I  T  F  I  *  K  K  K  Y  N  T  Q  *  Y  D  I  I  Q  Y  N  I  L  R  N  N  I  P  P  N  K  V  L  Q  G  V  W  *  I  I  *  V  K  L  L  H  T  L  T  L  C  I  S  S  T  L  F  G  I  L  F  H  A  I  Y  K  L  </second_frame>
            <third_frame>   R  K  V  T  E  C  L  S  F  A  V  I  I  S  M  T  L  E  *  F  S  W  *  R  E  A  R  R  V  W  D  L  A  D  K  E  K  S  K  G  D  E  Y  W  I  W  K  R  M  T  T  R  N  K  V  K  K  E  M  V  M  N  L  V  V  N  I  L  V  L  F  R  V  H  D  L  D  *  C  S  I  F  I  E  L  I  S  I  K  I  L  F  L  W  F  L  G  A  N  *  M  S  R  L  K  V  K  I  F  I  Y  Y  I  K  T  S  *  H  K  T  *  V  V  M  R  P  E  G  F  L  V  N  S  F  H  V  Y  R  C  M  L  S  E  Y  F  S  *  *  K  C  V  R  S  E  M  E  P  C  F  A  L  N  F  V  V  F  G  T  F  F  L  V  L  S  T  F  H  *  I  L  H  S  Q  K  R  Y  F  I  H  L  G  C  I  Y  L  P  W  H  L  V  E  I  S  L  E  Y  L  K  I  L  H  S  F  K  K  K  S  T  I  H  N  N  T  T  *  Y  N  I  I  Y  Y  E  I  I  Y  L  Q  T  K  C  Y  R  A  F  G  K  L  Y  K  *  N  Y  C  I  H  *  L  Y  V  L  V  V  P  Y  L  A  Y  F  F  M  L  Y  I  N  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121454" stop="121251"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIEVCKVRDGAMFCVKLCCFWYFFPSFVNLPLNSSQPKKIFYTLGLHLPSLAPCRDLLGVSQNITFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="127063" PGL_stop="126595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127063" e_stop="126977"/>
            <exon e_start="126885" e_stop="126595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.000" e_score="0.897"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="127063" e_stop="126977" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.000">
            <gDNA_intron_boundary i_start="126976" i_stop="126886" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="126885" e_stop="126595" e_length="291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127063" stop="126977"/>
              <exon start="126885" stop="126595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAATGGTCGGACACCTTCAGCTTGTTCTCCCGCGTAATTTGGCCTAGATCATGCCTCATGACAATGGCTTTTTCAAAACAGTAAG : TTCTCCCCAATGGAATAGCACCCATCTTGCGGGCTTCAAGCACTCATTTTTCATTGACCATCTTACAAGAGGAGTCATCGCACATATTCCATGCCACAGATTTTCGTGGTTGTAGTATGTGTCCGATACAAATGTTAGGCCTTCCAATAGAATAGCGGATTCTGGAAGACTTCCTCGCCATGCCAAAGCATATGAATTCTTTGTTCCATCCCTAATATCCCTTCCTTTAAAGCAAAGAAGGCGTCCTTTGGATGCTTTGGAAGGGAAATACAAGTGTTCTGTCTCATTTTC</gDNA_template>
            <first_frame> A  N  G  R  T  P  S  A  C  S  P  A  *  F  G  L  D  H  A  S  *  Q  W  L  F  Q  N  S  K  :  F  S  P  M  E  *  H  P  S  C  G  L  Q  A  L  I  F  H  *  P  S  Y  K  R  S  H  R  T  Y  S  M  P  Q  I  F  V  V  V  V  C  V  R  Y  K  C  *  A  F  Q  *  N  S  G  F  W  K  T  S  S  P  C  Q  S  I  *  I  L  C  S  I  P  N  I  P  S  F  K  A  K  K  A  S  F  G  C  F  G  R  E  I  Q  V  F  C  L  I  F </first_frame>
            <second_frame>  Q  M  V  G  H  L  Q  L  V  L  P  R  N  L  A  *  I  M  P  H  D  N  G  F  F  K  T  V  S :   S  P  Q  W  N  S  T  H  L  A  G  F  K  H  S  F  F  I  D  H  L  T  R  G  V  I  A  H  I  P  C  H  R  F  S  W  L  *  Y  V  S  D  T  N  V  R  P  S  N  R  I  A  D  S  G  R  L  P  R  H  A  K  A  Y  E  F  F  V  P  S  L  I  S  L  P  L  K  Q  R  R  R  P  L  D  A  L  E  G  K  Y  K  C  S  V  S  F   </second_frame>
            <third_frame>   K  W  S  D  T  F  S  L  F  S  R  V  I  W  P  R  S  C  L  M  T  M  A  F  S  K  Q  *   : V  L  P  N  G  I  A  P  I  L  R  A  S  S  T  H  F  S  L  T  I  L  Q  E  E  S  S  H  I  F  H  A  T  D  F  R  G  C  S  M  C  P  I  Q  M  L  G  L  P  I  E  *  R  I  L  E  D  F  L  A  M  P  K  H  M  N  S  L  F  H  P  *  Y  P  F  L  *  S  K  E  G  V  L  W  M  L  W  K  G  N  T  S  V  L  S  H  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0049I21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="130991" PGL_stop="127993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130991" e_stop="130837"/>
            <exon e_start="130733" e_stop="130610"/>
            <exon e_start="129155" e_stop="129099"/>
            <exon e_start="128470" e_stop="127993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.858"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.858">
            <gDNA_exon_boundary e_start="130991" e_stop="130837" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="130836" i_stop="130734" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="130733" e_stop="130610" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="130609" i_stop="129156" i_length="1454"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="129155" e_stop="129099" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.928">
            <gDNA_intron_boundary i_start="129098" i_stop="128471" i_length="628"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="128470" e_stop="127993" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130991" stop="130837"/>
              <exon start="130733" stop="130610"/>
              <exon start="129155" stop="129099"/>
              <exon start="128470" stop="127993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130991" stop="130837"/>
              <exon start="130733" stop="130610"/>
              <exon start="129155" stop="129099"/>
              <exon start="128470" stop="128001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130991" stop="130837"/>
              <exon start="130733" stop="130610"/>
              <exon start="129155" stop="129099"/>
              <exon start="128470" stop="128002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130900" stop="130837"/>
              <exon start="130733" stop="130610"/>
              <exon start="129155" stop="129099"/>
              <exon start="128470" stop="128105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130900" stop="130837"/>
              <exon start="130733" stop="130610"/>
              <exon start="129155" stop="129099"/>
              <exon start="128470" stop="128256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAAATTCGAGTTCTCGACGATCTTTGGCAGCAAAGTCATTCCCTGTACGATAGTTTCAAGTTTTTCTTAGGGTTTCTTCAGTACTCTCTTTCAATGGCTTCTAGCTCTCATAGAGGCAGTGATTTCTACGGGGCTGCTTCATATAGATCCAG : AGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAAT : GTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTG : CAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGGTCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTTTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACAGATTCTAAGCAGTGGCAGAGTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTAACCTTTTTCTTTTCATTTTATTGTTCTTTGTAATACTTGCTATATGACAATGACCAGTGGGTGCTTACCTTAGAAAAATGTGATTATGGTGCAATGGAGTATGTTATATAAT</gDNA_template>
            <first_frame> Q  K  I  R  V  L  D  D  L  W  Q  Q  S  H  S  L  Y  D  S  F  K  F  F  L  G  F  L  Q  Y  S  L  S  M  A  S  S  S  H  R  G  S  D  F  Y  G  A  A  S  Y  R  S  R :   D  G  L  S  T  R  Q  V  G  S  A  D  E  I  Q  L  R  I  D  P  M  H  G  D  L  D  D  E  I  T  G  L  R  K  Q  V  K  Q  L  R  N  :  V  A  Q  E  I  E  S  E  A  K  Y  Q  N  D  F  I  S  Q  L  :  Q  M  T  L  I  K  A  Q  A  G  V  K  N  N  M  R  R  L  N  R  S  I  I  Q  E  G  S  N  H  V  M  H  V  V  L  F  A  L  F  C  F  F  I  I  Y  W  L  A  K  F  S  R  R  *  V  Q  L  T  F  Y  V  G  L  L  F  P  G  T  S  S  D  E  D  T  I  Y  S  S  H  Q  T  D  S  K  Q  W  Q  S  F  S  D  L  G  S  K  G  G  N  C  R  N  S  G  Y  *  S  Y  V  K  L  P  N  L  *  K  T  V  G  C  Y  Y  L  T  F  F  F  S  F  Y  C  S  L  *  Y  L  L  Y  D  N  D  Q  W  V  L  T  L  E  K  C  D  Y  G  A  M  E  Y  V  I  *  </first_frame>
            <second_frame>  R  K  F  E  F  S  T  I  F  G  S  K  V  I  P  C  T  I  V  S  S  F  S  *  G  F  F  S  T  L  F  Q  W  L  L  A  L  I  E  A  V  I  S  T  G  L  L  H  I  D  P   : E  M  D  *  A  R  G  K  *  V  V  Q  M  K  Y  S  C  G  L  I  R  C  T  E  I  *  M  M  R  S  Q  V  F  A  S  K  *  N  S  S  E  M :   *  H  K  K  L  S  R  K  Q  S  I  R  M  I  L  L  A  N  C :   K  *  H  *  S  K  L  R  Q  E  *  R  T  T  *  D  G  *  T  G  V  S  S  R  K  G  Q  T  M  *  C  M  W  F  F  L  L  Y  F  A  S  L  *  Y  I  G  W  P  S  F  H  G  D  K  C  N  S  L  S  M  L  V  C  C  F  L  V  Q  V  L  M  K  T  Q  S  I  Q  A  I  K  Q  I  L  S  S  G  R  V  L  V  I  W  E  A  R  G  A  T  V  G  T  P  D  I  S  L  M  *  S  F  L  I  C  R  K  P  W  V  A  T  I  *  P  F  S  F  H  F  I  V  L  C  N  T  C  Y  M  T  M  T  S  G  C  L  P  *  K  N  V  I  M  V  Q  W  S  M  L  Y  N </second_frame>
            <third_frame>   E  N  S  S  S  R  R  S  L  A  A  K  S  F  P  V  R  *  F  Q  V  F  L  R  V  S  S  V  L  S  F  N  G  F  *  L  S  *  R  Q  *  F  L  R  G  C  F  I  *  I  Q  :  R  W  I  E  H  E  A  S  R  *  C  R  *  N  T  V  A  D  *  S  D  A  R  R  F  R  *  *  D  H  R  S  S  Q  A  S  K  T  A  Q  K   : C  S  T  R  N  *  V  G  S  K  V  S  E  *  F  Y  *  P  T   : A  N  D  I  D  Q  S  S  G  R  S  K  E  Q  H  E  T  V  E  Q  E  Y  H  P  G  R  V  K  P  C  D  A  C  G  S  F  C  S  I  L  L  L  Y  N  I  L  V  G  Q  V  F  T  E  I  S  A  T  H  F  L  C  W  F  A  V  S  W  Y  K  F  *  *  R  H  N  L  F  K  P  S  N  R  F  *  A  V  A  E  F  *  *  F  G  K  Q  G  G  Q  L  *  E  L  R  I  L  V  L  C  K  A  S  *  S  V  E  N  R  G  L  L  L  F  N  L  F  L  F  I  L  L  F  F  V  I  L  A  I  *  Q  *  P  V  G  A  Y  L  R  K  M  *  L  W  C  N  G  V  C  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130991" stop="130837"/>
                    <exon start="130733" stop="130610"/>
                    <exon start="129155" stop="129099"/>
                    <exon start="128470" stop="128309"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKIRVLDDLWQQSHSLYDSFKFFLGFLQYSLSMASSSHRGSDFYGAASYRSRDGLSTRQVGSADEIQLRIDPMHGDLDDEITGLRKQVKQLRNVAQEIESEAKYQNDFISQLQMTLIKAQAGVKNNMRRLNRSIIQEGSNHVMHVVLFALFCFFIIYWLAKFSRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128340" stop="128146"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIGWPSFHGDKCNSLSMLVCCFLVQVLMKTQSIQAIKQILSSGRVLVIWEARGATVGTPDISLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="136261" PGL_stop="139666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136261" e_stop="136526"/>
            <exon e_start="136626" e_stop="136724"/>
            <exon e_start="137022" e_stop="137063"/>
            <exon e_start="137191" e_stop="137320"/>
            <exon e_start="139128" e_stop="139229"/>
            <exon e_start="139329" e_stop="139615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.803" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="136261" e_stop="136526" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.803" acc_prob="0.993">
            <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="136626" e_stop="136724" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="137022" e_stop="137063" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="137191" e_stop="137320" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.921">
            <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="139128" e_stop="139229" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="139329" e_stop="139615" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136261" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136261" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136261" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136264" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136265" stop="136526"/>
              <exon start="136626" stop="136724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136266" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136269" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136269" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136270" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136275" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136279" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136285" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136285" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136306" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136408" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136429" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136429" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136429" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136496" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136509" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136510" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136510" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137046" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137046" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137229" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137229" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139161" stop="139229"/>
              <exon start="139329" stop="139597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTTGAATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG : GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG : GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG : GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG : GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG : ATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGTTCTAACTTTTAGAAATTT</gDNA_template>
            <first_frame> S  F  E  F  L  K  K  I  L  L  P  W  E  V  *  V  I  R  K  L  I  R  G  N  P  D  F  C  A  F  M  D  F  E  Q  V  G  K  F  *  R  S  K  Y  L  I  N  G  Q  L  K  L  W  I  N  *  I  *  F  L  L  M  R  L  F  H  L  K  E  N  L  K  L  K  A  S  L  T  L  P  I  T  S  G  F  N  S  I  R :   N  L  Q  S  M  R  I  L  I  N  V  L  N  T  *  K  N  V  *  S  N  M  D  L  S  M  V  F  L  V  S  L  R :   G  Q  F  F  P  E  H  C  R  G  C  R  L  R :   K  W  D  L  Q  R  H  Q  K  L  N  I  *  S  *  L  E  V  L  N  F  G  I  N  Q  W  P  K  K  L  I  H  Q  Q  L  H  A  L  P  F  I  F  *  :  V  S  K  I  T  *  N  S  M  G  *  N  C  W  N  H  V  L  I  Q  W  *  F  I  I  L  G  V  T  L  Y  Q  D  S  :  M  R  K  D  Q  R  V  C  L  V  S  L  R  R  C  K  K  R  L  T  S  D  Q  V  *  *  F  F  F  K  K  K  N  S  G  S  P  *  F  G  T  C  S  Y  H  L  F  L  I  *  I  K  *  L  R  V  I  S  I  L  Q  C  R  N  E  K  Y  Q  T  M  L  L  Y  L  P  Q  F  A  I  R  L  Y  *  Y  K  N  L  L  S  V  L  T  F  R  N   </first_frame>
            <second_frame>  H  L  N  F  *  K  K  Y  C  Y  H  G  K  C  R  *  F  E  N  S  S  E  E  T  Q  I  F  V  P  S  W  I  S  N  K  W  E  N  F  E  E  A  N  I  *  *  M  A  N  *  S  C  G  *  I  R  S  S  F  C  *  C  A  F  S  I  S  R  K  I  *  S  *  R  H  L  *  P  S  L  L  R  V  V  S  I  Q  *   : G  I  Y  R  V  *  E  F  *  *  M  S  *  I  H  R  R  M  Y  D  Q  T  W  T  F  R  W  S  S  W  F  L  S   : G  G  N  S  F  R  S  I  V  G  V  A  G  *   : G  S  G  T  Y  K  G  I  K  N  *  I  S  D  H  N  W  R  C  *  I  S  E  *  I  S  G  R  K  S  L  F  T  S  N  C  M  P  F  R  S  F  F  R :   *  A  R  L  P  K  T  V  W  D  R  T  V  G  I  M  C  *  S  S  G  D  S  S  S  *  G  S  H  Y  T  K  I  R :   *  E  R  I  R  E  Y  A  *  F  H  *  E  G  A  R  R  D  *  Q  V  I  K  F  D  N  F  F  S  K  K  K  I  V  V  V  P  S  L  G  H  V  V  T  T  F  F  *  Y  K  *  N  S  S  E  *  L  V  F  Y  N  V  G  M  K  N  T  R  P  C  Y  C  I  Y  R  S  L  P  F  D  Y  I  D  I  K  I  F  Y  Q  F  *  L  L  E  I  </second_frame>
            <third_frame>   I  *  I  S  E  K  N  I  A  T  M  G  S  V  G  D  S  K  T  H  Q  R  K  P  R  F  L  C  L  H  G  F  R  T  S  G  K  I  L  K  K  Q  I  F  D  K  W  P  T  E  V  V  D  K  L  D  L  V  F  V  D  A  P  F  P  S  Q  G  K  S  E  V  E  G  I  F  D  P  P  Y  Y  E  W  F  Q  F  N  K  :  E  F  T  E  Y  E  N  F  D  K  C  L  E  Y  I  E  E  C  M  I  K  H  G  P  F  D  G  L  L  G  F  S  Q  :  G  A  I  L  S  G  A  L  S  G  L  Q  A  K  :  E  V  G  L  T  K  A  S  K  I  K  Y  L  I  I  I  G  G  A  K  F  R  N  K  S  V  A  E  K  A  Y  S  P  A  I  A  C  P  S  V  H  F  L   : G  E  Q  D  Y  L  K  Q  Y  G  I  E  L  L  E  S  C  V  D  P  V  V  I  H  H  P  R  G  H  T  I  P  R  F   : D  E  K  G  S  E  S  M  L  S  F  I  E  K  V  Q  E  E  I  N  K  *  S  S  L  I  I  F  F  Q  K  K  K  *  W  *  S  L  V  W  D  M  *  L  P  P  F  F  N  I  N  K  I  A  P  S  N  *  Y  F  T  M  *  E  *  K  I  P  D  H  A  I  V  F  T  A  V  C  H  S  I  I  L  I  *  K  S  F  I  S  S  N  F  *  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136269" stop="136526"/>
                    <exon start="136626" stop="136724"/>
                    <exon start="137022" stop="137063"/>
                    <exon start="137191" stop="137320"/>
                    <exon start="139128" stop="139229"/>
                    <exon start="139329" stop="139393"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISEKNIATMGSVGDSKTHQRKPRFLCLHGFRTSGKILKKQIFDKWPTEVVDKLDLVFVDAPFPSQGKSEVEGIFDPPYYEWFQFNKEFTEYENFDKCLEYIEECMIKHGPFDGLLGFSQGAILSGALSGLQAKEVGLTKASKIKYLIIIGGAKFRNKSVAEKAYSPAIACPSVHFLGEQDYLKQYGIELLESCVDPVVIHHPRGHTIPRFDEKGSESMLSFIEKVQEEINK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="136261" e_stop="136526"/>
            <exon e_start="136626" e_stop="136724"/>
            <exon e_start="137022" e_stop="137063"/>
            <exon e_start="137191" e_stop="137320"/>
            <exon e_start="139128" e_stop="139366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.803" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.921" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="136261" e_stop="136526" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.803" acc_prob="0.993">
            <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="136626" e_stop="136724" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="137022" e_stop="137063" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="137191" e_stop="137320" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.921">
            <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807"/>
          </intron>
          <exon e_serial="5" e_score="0.929">
            <gDNA_exon_boundary e_start="139128" e_stop="139366" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136261" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136261" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136264" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136265" stop="136526"/>
              <exon start="136626" stop="136724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136266" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136269" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136269" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136270" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136279" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136285" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136285" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136499" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136499" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTTGAATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG : GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG : GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG : GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG : GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAG</gDNA_template>
            <first_frame> S  F  E  F  L  K  K  I  L  L  P  W  E  V  *  V  I  R  K  L  I  R  G  N  P  D  F  C  A  F  M  D  F  E  Q  V  G  K  F  *  R  S  K  Y  L  I  N  G  Q  L  K  L  W  I  N  *  I  *  F  L  L  M  R  L  F  H  L  K  E  N  L  K  L  K  A  S  L  T  L  P  I  T  S  G  F  N  S  I  R :   N  L  Q  S  M  R  I  L  I  N  V  L  N  T  *  K  N  V  *  S  N  M  D  L  S  M  V  F  L  V  S  L  R :   G  Q  F  F  P  E  H  C  R  G  C  R  L  R :   K  W  D  L  Q  R  H  Q  K  L  N  I  *  S  *  L  E  V  L  N  F  G  I  N  Q  W  P  K  K  L  I  H  Q  Q  L  H  A  L  P  F  I  F  *  :  V  S  K  I  T  *  N  S  M  G  *  N  C  W  N  H  V  L  I  Q  W  *  F  I  I  L  G  V  T  L  Y  Q  D  S  V  N  L  F  *  L  F  Y  *  F  N  F  I  *  M  L  I  I  F  C  V  V  N  *  S  S  S  S  S  S  F  F  Q  M  R  K  D  Q  R  V  C  L  V  S  L   </first_frame>
            <second_frame>  H  L  N  F  *  K  K  Y  C  Y  H  G  K  C  R  *  F  E  N  S  S  E  E  T  Q  I  F  V  P  S  W  I  S  N  K  W  E  N  F  E  E  A  N  I  *  *  M  A  N  *  S  C  G  *  I  R  S  S  F  C  *  C  A  F  S  I  S  R  K  I  *  S  *  R  H  L  *  P  S  L  L  R  V  V  S  I  Q  *   : G  I  Y  R  V  *  E  F  *  *  M  S  *  I  H  R  R  M  Y  D  Q  T  W  T  F  R  W  S  S  W  F  L  S   : G  G  N  S  F  R  S  I  V  G  V  A  G  *   : G  S  G  T  Y  K  G  I  K  N  *  I  S  D  H  N  W  R  C  *  I  S  E  *  I  S  G  R  K  S  L  F  T  S  N  C  M  P  F  R  S  F  F  R :   *  A  R  L  P  K  T  V  W  D  R  T  V  G  I  M  C  *  S  S  G  D  S  S  S  *  G  S  H  Y  T  K  I  R  *  T  S  F  N  Y  F  I  N  S  T  S  F  K  C  *  L  Y  S  V  L  L  I  N  L  L  L  L  L  L  F  F  R  *  E  R  I  R  E  Y  A  *  F  H  *  </second_frame>
            <third_frame>   I  *  I  S  E  K  N  I  A  T  M  G  S  V  G  D  S  K  T  H  Q  R  K  P  R  F  L  C  L  H  G  F  R  T  S  G  K  I  L  K  K  Q  I  F  D  K  W  P  T  E  V  V  D  K  L  D  L  V  F  V  D  A  P  F  P  S  Q  G  K  S  E  V  E  G  I  F  D  P  P  Y  Y  E  W  F  Q  F  N  K  :  E  F  T  E  Y  E  N  F  D  K  C  L  E  Y  I  E  E  C  M  I  K  H  G  P  F  D  G  L  L  G  F  S  Q  :  G  A  I  L  S  G  A  L  S  G  L  Q  A  K  :  E  V  G  L  T  K  A  S  K  I  K  Y  L  I  I  I  G  G  A  K  F  R  N  K  S  V  A  E  K  A  Y  S  P  A  I  A  C  P  S  V  H  F  L   : G  E  Q  D  Y  L  K  Q  Y  G  I  E  L  L  E  S  C  V  D  P  V  V  I  H  H  P  R  G  H  T  I  P  R  F  G  K  P  L  L  T  I  L  L  I  Q  L  H  L  N  V  N  Y  I  L  C  C  *  L  I  F  F  F  F  F  F  F  S  D  E  K  G  S  E  S  M  L  S  F  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136269" stop="136526"/>
                    <exon start="136626" stop="136724"/>
                    <exon start="137022" stop="137063"/>
                    <exon start="137191" stop="137320"/>
                    <exon start="139128" stop="139297"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISEKNIATMGSVGDSKTHQRKPRFLCLHGFRTSGKILKKQIFDKWPTEVVDKLDLVFVDAPFPSQGKSEVEGIFDPPYYEWFQFNKEFTEYENFDKCLEYIEECMIKHGPFDGLLGFSQGAILSGALSGLQAKEVGLTKASKIKYLIIIGGAKFRNKSVAEKAYSPAIACPSVHFLGEQDYLKQYGIELLESCVDPVVIHHPRGHTIPRFGKPLLTILLIQLHLNVNYILCC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="136261" e_stop="136526"/>
            <exon e_start="136626" e_stop="136724"/>
            <exon e_start="137022" e_stop="137063"/>
            <exon e_start="137191" e_stop="137329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.803" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="136261" e_stop="136526" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.803" acc_prob="0.993">
            <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="136626" e_stop="136724" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="137022" e_stop="137063" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="137191" e_stop="137329" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136261" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136264" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136265" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136265" stop="136526"/>
              <exon start="136626" stop="136724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136266" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136269" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136269" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136270" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136279" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136285" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTTGAATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG : GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG : GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG : GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTC</gDNA_template>
            <first_frame> S  F  E  F  L  K  K  I  L  L  P  W  E  V  *  V  I  R  K  L  I  R  G  N  P  D  F  C  A  F  M  D  F  E  Q  V  G  K  F  *  R  S  K  Y  L  I  N  G  Q  L  K  L  W  I  N  *  I  *  F  L  L  M  R  L  F  H  L  K  E  N  L  K  L  K  A  S  L  T  L  P  I  T  S  G  F  N  S  I  R :   N  L  Q  S  M  R  I  L  I  N  V  L  N  T  *  K  N  V  *  S  N  M  D  L  S  M  V  F  L  V  S  L  R :   G  Q  F  F  P  E  H  C  R  G  C  R  L  R :   K  W  D  L  Q  R  H  Q  K  L  N  I  *  S  *  L  E  V  L  N  F  G  I  N  Q  W  P  K  K  L  I  H  Q  Q  L  H  A  L  P  F  I  F  *  V  S  F </first_frame>
            <second_frame>  H  L  N  F  *  K  K  Y  C  Y  H  G  K  C  R  *  F  E  N  S  S  E  E  T  Q  I  F  V  P  S  W  I  S  N  K  W  E  N  F  E  E  A  N  I  *  *  M  A  N  *  S  C  G  *  I  R  S  S  F  C  *  C  A  F  S  I  S  R  K  I  *  S  *  R  H  L  *  P  S  L  L  R  V  V  S  I  Q  *   : G  I  Y  R  V  *  E  F  *  *  M  S  *  I  H  R  R  M  Y  D  Q  T  W  T  F  R  W  S  S  W  F  L  S   : G  G  N  S  F  R  S  I  V  G  V  A  G  *   : G  S  G  T  Y  K  G  I  K  N  *  I  S  D  H  N  W  R  C  *  I  S  E  *  I  S  G  R  K  S  L  F  T  S  N  C  M  P  F  R  S  F  F  R  Y  L   </second_frame>
            <third_frame>   I  *  I  S  E  K  N  I  A  T  M  G  S  V  G  D  S  K  T  H  Q  R  K  P  R  F  L  C  L  H  G  F  R  T  S  G  K  I  L  K  K  Q  I  F  D  K  W  P  T  E  V  V  D  K  L  D  L  V  F  V  D  A  P  F  P  S  Q  G  K  S  E  V  E  G  I  F  D  P  P  Y  Y  E  W  F  Q  F  N  K  :  E  F  T  E  Y  E  N  F  D  K  C  L  E  Y  I  E  E  C  M  I  K  H  G  P  F  D  G  L  L  G  F  S  Q  :  G  A  I  L  S  G  A  L  S  G  L  Q  A  K  :  E  V  G  L  T  K  A  S  K  I  K  Y  L  I  I  I  G  G  A  K  F  R  N  K  S  V  A  E  K  A  Y  S  P  A  I  A  C  P  S  V  H  F  L  G  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136269" stop="136526"/>
                    <exon start="136626" stop="136724"/>
                    <exon start="137022" stop="137063"/>
                    <exon start="137191" stop="137328"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISEKNIATMGSVGDSKTHQRKPRFLCLHGFRTSGKILKKQIFDKWPTEVVDKLDLVFVDAPFPSQGKSEVEGIFDPPYYEWFQFNKEFTEYENFDKCLEYIEECMIKHGPFDGLLGFSQGAILSGALSGLQAKEVGLTKASKIKYLIIIGGAKFRNKSVAEKAYSPAIACPSVHFLGIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="136624" e_stop="136724"/>
            <exon e_start="137022" e_stop="137063"/>
            <exon e_start="137191" e_stop="137320"/>
            <exon e_start="139128" e_stop="139229"/>
            <exon e_start="139329" e_stop="139666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="136624" e_stop="136724" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137022" e_stop="137063" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="137191" e_stop="137320" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.921">
            <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="139128" e_stop="139229" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="139329" e_stop="139666" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136624" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137046" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137046" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137229" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137229" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139161" stop="139229"/>
              <exon start="139329" stop="139597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG : GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG : GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG : GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG : ATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGTTCTAACTTTTAGAAATTTATAGTTTAAAATATGTTTGCAAAAACATATATTTTCATTTTCATTTTGGAA</gDNA_template>
            <first_frame> R  N  L  Q  S  M  R  I  L  I  N  V  L  N  T  *  K  N  V  *  S  N  M  D  L  S  M  V  F  L  V  S  L  R :   G  Q  F  F  P  E  H  C  R  G  C  R  L  R :   K  W  D  L  Q  R  H  Q  K  L  N  I  *  S  *  L  E  V  L  N  F  G  I  N  Q  W  P  K  K  L  I  H  Q  Q  L  H  A  L  P  F  I  F  *  :  V  S  K  I  T  *  N  S  M  G  *  N  C  W  N  H  V  L  I  Q  W  *  F  I  I  L  G  V  T  L  Y  Q  D  S  :  M  R  K  D  Q  R  V  C  L  V  S  L  R  R  C  K  K  R  L  T  S  D  Q  V  *  *  F  F  F  K  K  K  N  S  G  S  P  *  F  G  T  C  S  Y  H  L  F  L  I  *  I  K  *  L  R  V  I  S  I  L  Q  C  R  N  E  K  Y  Q  T  M  L  L  Y  L  P  Q  F  A  I  R  L  Y  *  Y  K  N  L  L  S  V  L  T  F  R  N  L  *  F  K  I  C  L  Q  K  H  I  F  S  F  S  F  W   </first_frame>
            <second_frame>  G  I  Y  R  V  *  E  F  *  *  M  S  *  I  H  R  R  M  Y  D  Q  T  W  T  F  R  W  S  S  W  F  L  S   : G  G  N  S  F  R  S  I  V  G  V  A  G  *   : G  S  G  T  Y  K  G  I  K  N  *  I  S  D  H  N  W  R  C  *  I  S  E  *  I  S  G  R  K  S  L  F  T  S  N  C  M  P  F  R  S  F  F  R :   *  A  R  L  P  K  T  V  W  D  R  T  V  G  I  M  C  *  S  S  G  D  S  S  S  *  G  S  H  Y  T  K  I  R :   *  E  R  I  R  E  Y  A  *  F  H  *  E  G  A  R  R  D  *  Q  V  I  K  F  D  N  F  F  S  K  K  K  I  V  V  V  P  S  L  G  H  V  V  T  T  F  F  *  Y  K  *  N  S  S  E  *  L  V  F  Y  N  V  G  M  K  N  T  R  P  C  Y  C  I  Y  R  S  L  P  F  D  Y  I  D  I  K  I  F  Y  Q  F  *  L  L  E  I  Y  S  L  K  Y  V  C  K  N  I  Y  F  H  F  H  F  G  </second_frame>
            <third_frame>   E  F  T  E  Y  E  N  F  D  K  C  L  E  Y  I  E  E  C  M  I  K  H  G  P  F  D  G  L  L  G  F  S  Q  :  G  A  I  L  S  G  A  L  S  G  L  Q  A  K  :  E  V  G  L  T  K  A  S  K  I  K  Y  L  I  I  I  G  G  A  K  F  R  N  K  S  V  A  E  K  A  Y  S  P  A  I  A  C  P  S  V  H  F  L   : G  E  Q  D  Y  L  K  Q  Y  G  I  E  L  L  E  S  C  V  D  P  V  V  I  H  H  P  R  G  H  T  I  P  R  F   : D  E  K  G  S  E  S  M  L  S  F  I  E  K  V  Q  E  E  I  N  K  *  S  S  L  I  I  F  F  Q  K  K  K  *  W  *  S  L  V  W  D  M  *  L  P  P  F  F  N  I  N  K  I  A  P  S  N  *  Y  F  T  M  *  E  *  K  I  P  D  H  A  I  V  F  T  A  V  C  H  S  I  I  L  I  *  K  S  F  I  S  S  N  F  *  K  F  I  V  *  N  M  F  A  K  T  Y  I  F  I  F  I  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136626" stop="136724"/>
                    <exon start="137022" stop="137063"/>
                    <exon start="137191" stop="137320"/>
                    <exon start="139128" stop="139229"/>
                    <exon start="139329" stop="139393"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFTEYENFDKCLEYIEECMIKHGPFDGLLGFSQGAILSGALSGLQAKEVGLTKASKIKYLIIIGGAKFRNKSVAEKAYSPAIACPSVHFLGEQDYLKQYGIELLESCVDPVVIHHPRGHTIPRFDEKGSESMLSFIEKVQEEINK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="142331" PGL_stop="143829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142331" e_stop="142643"/>
            <exon e_start="142738" e_stop="142836"/>
            <exon e_start="143039" e_stop="143080"/>
            <exon e_start="143160" e_stop="143289"/>
            <exon e_start="143394" e_stop="143495"/>
            <exon e_start="143632" e_stop="143829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.600" acc_prob="0.983" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="142331" e_stop="142643" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.600" acc_prob="0.983">
            <gDNA_intron_boundary i_start="142644" i_stop="142737" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="142738" e_stop="142836" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="142837" i_stop="143038" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="143039" e_stop="143080" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="143081" i_stop="143159" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="143160" e_stop="143289" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="143290" i_stop="143393" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="143394" e_stop="143495" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="143496" i_stop="143631" i_length="136"/>
          </intron>
          <exon e_serial="6" e_score="0.929">
            <gDNA_exon_boundary e_start="143632" e_stop="143829" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142331" stop="142643"/>
              <exon start="142738" stop="142836"/>
              <exon start="143039" stop="143080"/>
              <exon start="143160" stop="143289"/>
              <exon start="143394" stop="143495"/>
              <exon start="143632" stop="143667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142354" stop="142643"/>
              <exon start="142738" stop="142836"/>
              <exon start="143039" stop="143080"/>
              <exon start="143160" stop="143289"/>
              <exon start="143394" stop="143495"/>
              <exon start="143632" stop="143829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142356" stop="142643"/>
              <exon start="142738" stop="142836"/>
              <exon start="143039" stop="143080"/>
              <exon start="143160" stop="143289"/>
              <exon start="143394" stop="143495"/>
              <exon start="143632" stop="143813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142380" stop="142643"/>
              <exon start="142738" stop="142836"/>
              <exon start="143039" stop="143080"/>
              <exon start="143160" stop="143223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATACTGTACTATTTACCCAAAATTTTCTCCAAAATGTACGGGAACACTATGAATATGGCAAATTCAGCCGCCACCATGGCAGGTGAAGGAACTGCCAACGCCAATCAGAGGAAATTACCCAGATTTTTGTGCCTTCATGGGTTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAATTGAAGTGGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATATTTGCCCCTCCTTATTATGAATGGTACCAGTTCAATAAG : GAATTGAATGAGTATGAGAATTTTGATAACTGTCTTGATTATATACAAGAGTGTATGATTAAGCACGGACCTTTCGATGGTCTTCTTGGTTTCTCCCAG : GGGGCAATTCTTTCTGGAGCATTGCGTGGATTGCAGGATAAG : GGAGTGGGACTTACTAAGGTTCGCAAAATTAAATATCTGATCATAATTGGAGGTGCGAAAATGCAGATTAAATCACTGGCCGAAAAAGCTTATTCACCAGCAATTACATGCCCTTCCGTTCACTTTTTAG : GTGAGAAAGACTTCCTGAAGCCGTATGGGATGGAACTTTTGGAATCATATGTTGATCCAGTGGTCATTCATCATCCTAAGGGCCATACTATACCAAGATTTG : ATGAGAAAGGATTAGAGAGCATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAGTACAAGTGAACAAGTTTGATGAAATTACATTTTTATATGATAGATAGCTCCTCCTTTGGGAAGTATGTCTTATCTTTAATTTCTTAAAAATAATATGGCTTTGAATAACTTAAATTTTTTGACGCTCTACAAAAGAAAAA</gDNA_template>
            <first_frame> D  T  V  L  F  T  Q  N  F  L  Q  N  V  R  E  H  Y  E  Y  G  K  F  S  R  H  H  G  R  *  R  N  C  Q  R  Q  S  E  E  I  T  Q  I  F  V  P  S  W  V  S  N  K  W  E  N  F  E  E  A  N  I  *  *  M  A  N  *  S  G  G  *  I  R  S  S  F  C  *  C  A  F  S  I  S  R  Q  I  *  S  *  R  H  I  C  P  S  L  L  *  M  V  P  V  Q  *   : G  I  E  *  V  *  E  F  *  *  L  S  *  L  Y  T  R  V  Y  D  *  A  R  T  F  R  W  S  S  W  F  L  P   : G  G  N  S  F  W  S  I  A  W  I  A  G  *   : G  S  G  T  Y  *  G  S  Q  N  *  I  S  D  H  N  W  R  C  E  N  A  D  *  I  T  G  R  K  S  L  F  T  S  N  Y  M  P  F  R  S  L  F  R :   *  E  R  L  P  E  A  V  W  D  G  T  F  G  I  I  C  *  S  S  G  H  S  S  S  *  G  P  Y  Y  T  K  I  * :   *  E  R  I  R  E  H  A  *  F  H  *  E  G  A  R  R  D  *  Y  K  *  T  S  L  M  K  L  H  F  Y  M  I  D  S  S  S  F  G  K  Y  V  L  S  L  I  S  *  K  *  Y  G  F  E  *  L  K  F  F  D  A  L  Q  K  K   </first_frame>
            <second_frame>  I  L  Y  Y  L  P  K  I  F  S  K  M  Y  G  N  T  M  N  M  A  N  S  A  A  T  M  A  G  E  G  T  A  N  A  N  Q  R  K  L  P  R  F  L  C  L  H  G  F  R  T  S  G  K  I  L  K  K  Q  I  F  D  K  W  P  I  E  V  V  D  K  L  D  L  V  F  V  D  A  P  F  P  S  Q  G  K  S  E  V  E  G  I  F  A  P  P  Y  Y  E  W  Y  Q  F  N  K  :  E  L  N  E  Y  E  N  F  D  N  C  L  D  Y  I  Q  E  C  M  I  K  H  G  P  F  D  G  L  L  G  F  S  Q  :  G  A  I  L  S  G  A  L  R  G  L  Q  D  K  :  G  V  G  L  T  K  V  R  K  I  K  Y  L  I  I  I  G  G  A  K  M  Q  I  K  S  L  A  E  K  A  Y  S  P  A  I  T  C  P  S  V  H  F  L   : G  E  K  D  F  L  K  P  Y  G  M  E  L  L  E  S  Y  V  D  P  V  V  I  H  H  P  K  G  H  T  I  P  R  F   : D  E  K  G  L  E  S  M  L  S  F  I  E  K  V  Q  E  E  I  S  T  S  E  Q  V  *  *  N  Y  I  F  I  *  *  I  A  P  P  L  G  S  M  S  Y  L  *  F  L  K  N  N  M  A  L  N  N  L  N  F  L  T  L  Y  K  R  K  </second_frame>
            <third_frame>   Y  C  T  I  Y  P  K  F  S  P  K  C  T  G  T  L  *  I  W  Q  I  Q  P  P  P  W  Q  V  K  E  L  P  T  P  I  R  G  N  Y  P  D  F  C  A  F  M  G  F  E  Q  V  G  K  F  *  R  S  K  Y  L  I  N  G  Q  L  K  W  W  I  N  *  I  *  F  L  L  M  R  L  F  H  L  K  A  N  L  K  L  K  A  Y  L  P  L  L  I  M  N  G  T  S  S  I  R :   N  *  M  S  M  R  I  L  I  T  V  L  I  I  Y  K  S  V  *  L  S  T  D  L  S  M  V  F  L  V  S  P  R :   G  Q  F  F  L  E  H  C  V  D  C  R  I  R :   E  W  D  L  L  R  F  A  K  L  N  I  *  S  *  L  E  V  R  K  C  R  L  N  H  W  P  K  K  L  I  H  Q  Q  L  H  A  L  P  F  T  F  *  :  V  R  K  T  S  *  S  R  M  G  W  N  F  W  N  H  M  L  I  Q  W  S  F  I  I  L  R  A  I  L  Y  Q  D  L  :  M  R  K  D  *  R  A  C  L  V  S  L  R  R  C  K  K  R  L  V  Q  V  N  K  F  D  E  I  T  F  L  Y  D  R  *  L  L  L  W  E  V  C  L  I  F  N  F  L  K  I  I  W  L  *  I  T  *  I  F  *  R  S  T  K  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142332" stop="142643"/>
                    <exon start="142738" stop="142836"/>
                    <exon start="143039" stop="143080"/>
                    <exon start="143160" stop="143289"/>
                    <exon start="143394" stop="143495"/>
                    <exon start="143632" stop="143708"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILYYLPKIFSKMYGNTMNMANSAATMAGEGTANANQRKLPRFLCLHGFRTSGKILKKQIFDKWPIEVVDKLDLVFVDAPFPSQGKSEVEGIFAPPYYEWYQFNKELNEYENFDNCLDYIQECMIKHGPFDGLLGFSQGAILSGALRGLQDKGVGLTKVRKIKYLIIIGGAKMQIKSLAEKAYSPAITCPSVHFLGEKDFLKPYGMELLESYVDPVVIHHPKGHTIPRFDEKGLESMLSFIEKVQEEISTSEQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="162082" PGL_stop="158672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="162082" e_stop="161345"/>
            <exon e_start="160291" e_stop="158672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.989"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="162082" e_stop="161345" e_length="738"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="161344" i_stop="160292" i_length="1053"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="160291" e_stop="158672" e_length="1620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162082" stop="161359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161849" stop="161345"/>
              <exon start="160291" stop="160151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161842" stop="161345"/>
              <exon start="160291" stop="160096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160269" stop="159599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160260" stop="159871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160258" stop="159711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160141" stop="159569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160141" stop="159694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160139" stop="159628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160139" stop="159629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160139" stop="159651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160139" stop="159730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159812" stop="159090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159434" stop="158838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159434" stop="158879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158943" stop="158672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158943" stop="158672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556239" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTAAAATCTTGATTAGTGATAAAGAACTGTTTTTTTTTTTCATCTTCTTCAACTCTTCCTGGATCTGAAAAAAAGATATTTTATTACTTCAAGAGGGGGTTTATTTAATATTTTTGTTTATAAATAAATTATTCAATTCAGATTTCAGAGAAACACTTCCCATTAATCTAGACCCTCTTTTACCCCCACCCCACCCACCCTACCCACCCCCCACATGAGTGGTAGTGACAATCCTTCAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGC : GTATTTGATTCTGTATGTGACGAAGGCCTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAGTGGTGATGATGAGGAAGGGAGTGAGACTAATGAGCATGTCAATACCTTGTACATGTACCGATCTCTTGATGGACCGAGGGCTGATGTACCCTCATTTGTCCAAATACTGTGACCGACCTTTATAGAAGATAGGAACTTTCTGCAGTCAATTGATTGGTACCTTTGAGAAATGATTTAACTATTTTCTTGGGAAGAGATGCTCTCGGGAAATCTGTTGCAAATTTCCTTGTAGAGAAAACGAATGGTGATCCTCTTGCAAAAGCAGTGAGCCAATGTGTAATGTATTCAATGCTGGTCTCCATGGATGTCATTGTATATGGTTCCGTACAGAGATTGTTTTTTTCCAGCAAGGAAAATCTAGAAGACAAAACGTTGTTGTATCAGTAATCTTTTCTATTCTTCATATTCATGGAGCCTTCAATTAGCAAGTGGAGTCAATGCTAGTAAGGGTAGATGTTCCAAACTCAAAAGGCTTTTGGATCAAATTGCAGCTGAATGAGATGTTTTTGCAGAATCAACACGTGCATGCTGGGTCAAGTAGTATCTTTTCATACCTTGTTATTTTTTTTTTGTTTCATTGTTAGTTTAGAGTTGGAAGTTCTTTTTTATTTTTAGTTGGTGGATAGCCTAATGGTCAGTCAGAAGAATCTCCTCCATCTCGCTTTCTAGAAAAATATTGGTTCTTTCCAGGATGTGTTGTTTCTTAGCACCTGACTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGTAATAAATGCCAAATATGCATGGACCACTTTATGGGGAATGATCAGCTTGATAGTGAAGGAAGACCCATAAATGTTGTGTGGAACAAGTACAAAAATGCAGGACCCCTCCTCTCTCTTATCCTCCATTACCTTTCCAGCTGATGATGAATGGCCCTTATTTCTCTTTGTATCTCGAGGAGCCTGTTCTATACATGGATGGATAGTACA</gDNA_template>
            <first_frame> K  L  K  I  L  I  S  D  K  E  L  F  F  F  F  I  F  F  N  S  S  W  I  *  K  K  D  I  L  L  L  Q  E  G  V  Y  L  I  F  L  F  I  N  K  L  F  N  S  D  F  R  E  T  L  P  I  N  L  D  P  L  L  P  P  P  H  P  P  Y  P  P  P  T  *  V  V  V  T  I  L  Q  R  C  L  K  M  R  S  V  L  V  L  Q  I  S  P  V  V  L  L  Q  K  Q  G  T  V  A  L  T  P  P  L  P  V  V  E  G  G  F  L  T  F  R  H  T  Q  I  K  F  L  K  M  C  W  K  M  F  F  A  S  *  L  I  A  V  T  V  T  L  H  P  L  *  A  N  L  G  I  G  L  R  L  *  P  D  P  K  C  L  L  A  T  V  M  L  F  R  R  P  G  L  R  P  V  S  R  G  *  P  L  W  P  L  K  G  N  L  G  L  L  I  S  V  C  F  L  Q  I  G  V  L  T  L  L  L  G  L  R  F  W  V  I  L  I  V  A  L  R  N  C  I  S  N  V  C  P  Y  L  M  M  I  *  V  Y  W  R  :  V  F  D  S  V  C  D  E  G  L  E  A  V  A  A  T  C  K  D  L  R  E  I  R  V  F  P  I  E  A  R  E  D  A  D  A  P  V  S  E  V  G  L  L  A  I  S  E  G  C  R  K  L  K  S  I  L  Y  F  C  Q  K  M  T  N  A  A  V  I  A  M  S  K  N  C  P  D  L  V  V  F  R  L  C  I  M  G  R  H  L  P  D  H  V  T  N  E  P  M  D  E  G  F  G  A  I  V  K  N  C  K  K  L  T  R  L  A  V  S  G  L  L  T  D  R  A  F  S  Y  I  G  Q  Y  G  K  L  V  R  T  L  S  V  A  F  A  G  N  S  D  L  A  L  K  Y  V  L  E  G  C  P  K  L  Q  K  L  E  I  R  D  C  P  F  G  D  L  S  L  R  S  G  L  H  H  Y  Y  N  M  R  F  L  W  L  S  S  C  R  V  T  L  Q  G  C  Q  E  I  A  R  Q  L  P  R  L  V  V  E  V  I  S  G  D  D  E  E  G  S  E  T  N  E  H  V  N  T  L  Y  M  Y  R  S  L  D  G  P  R  A  D  V  P  S  F  V  Q  I  L  *  P  T  F  I  E  D  R  N  F  L  Q  S  I  D  W  Y  L  *  E  M  I  *  L  F  S  W  E  E  M  L  S  G  N  L  L  Q  I  S  L  *  R  K  R  M  V  I  L  L  Q  K  Q  *  A  N  V  *  C  I  Q  C  W  S  P  W  M  S  L  Y  M  V  P  Y  R  D  C  F  F  P  A  R  K  I  *  K  T  K  R  C  C  I  S  N  L  F  Y  S  S  Y  S  W  S  L  Q  L  A  S  G  V  N  A  S  K  G  R  C  S  K  L  K  R  L  L  D  Q  I  A  A  E  *  D  V  F  A  E  S  T  R  A  C  W  V  K  *  Y  L  F  I  P  C  Y  F  F  F  V  S  L  L  V  *  S  W  K  F  F  F  I  F  S  W  W  I  A  *  W  S  V  R  R  I  S  S  I  S  L  S  R  K  I  L  V  L  S  R  M  C  C  F  L  A  P  D  C  *  I  Y  Y  C  Y  F  *  K  K  C  E  M  G  N  K  C  Q  I  C  M  D  H  F  M  G  N  D  Q  L  D  S  E  G  R  P  I  N  V  V  W  N  K  Y  K  N  A  G  P  L  L  S  L  I  L  H  Y  L  S  S  *  *  *  M  A  L  I  S  L  C  I  S  R  S  L  F  Y  T  W  M  D  S  T </first_frame>
            <second_frame>  S  L  K  S  *  L  V  I  K  N  C  F  F  F  S  S  S  S  T  L  P  G  S  E  K  K  I  F  Y  Y  F  K  R  G  F  I  *  Y  F  C  L  *  I  N  Y  S  I  Q  I  S  E  K  H  F  P  L  I  *  T  L  F  Y  P  H  P  T  H  P  T  H  P  P  H  E  W  *  *  Q  S  F  R  D  V  *  R  *  G  A  S  L  S  F  R  S  H  R  W  C  Y  C  K  S  K  E  L  L  L  *  R  R  R  Y  R  W  W  R  G  D  F  *  L  F  A  T  P  R  S  S  S  *  K  C  A  G  K  C  S  L  L  L  N  *  S  P  *  P  *  R  C  I  P  C  K  Q  I  L  V  S  G  *  G  F  N  Q  I  R  S  V  Y  W  Q  L  L  C  C  F  A  D  P  G  Y  D  P  F  Q  E  G  D  L  C  G  H  *  R  E  T  *  V  C  *  F  Q  F  A  S  S  R  L  G  C  S  L  Y  S  L  G  F  G  F  G  *  F  L  S  W  P  *  E  I  V  S  Q  T  Y  V  H  I  *  *  *  S  R  F  I  G  A :   Y  L  I  L  Y  V  T  K  A  L  R  Q  L  L  Q  H  V  R  I  C  G  R  F  E  F  S  L  S  K  L  G  K  M  Q  M  P  Q  F  L  K  *  A  S  L  Q  F  L  R  V  A  G  N  S  S  P  S  Y  I  S  A  K  K  *  Q  M  Q  L  L  *  L  C  Q  R  T  A  R  T  L  W  Y  S  G  Y  A  L  W  V  G  T  C  L  T  M  L  Q  M  N  R  W  M  K  A  L  G  L  L  S  R  T  V  R  S  L  L  D  L  L  Y  L  V  Y  *  L  I  G  L  S  V  T  L  D  N  M  E  N  *  S  E  P  Y  Q  L  L  L  P  E  T  V  T  W  L  *  S  M  C  S  R  A  A  L  S  C  R  S  *  R  S  G  I  A  R  L  E  I  C  L  C  V  L  V  Y  T  T  I  T  T  *  G  S  F  G  Y  H  L  V  E  *  L  Y  K  V  V  R  R  L  L  A  N  C  P  V  *  L  W  K  S  L  V  V  M  M  R  K  G  V  R  L  M  S  M  S  I  P  C  T  C  T  D  L  L  M  D  R  G  L  M  Y  P  H  L  S  K  Y  C  D  R  P  L  *  K  I  G  T  F  C  S  Q  L  I  G  T  F  E  K  *  F  N  Y  F  L  G  K  R  C  S  R  E  I  C  C  K  F  P  C  R  E  N  E  W  *  S  S  C  K  S  S  E  P  M  C  N  V  F  N  A  G  L  H  G  C  H  C  I  W  F  R  T  E  I  V  F  F  Q  Q  G  K  S  R  R  Q  N  V  V  V  S  V  I  F  S  I  L  H  I  H  G  A  F  N  *  Q  V  E  S  M  L  V  R  V  D  V  P  N  S  K  G  F  W  I  K  L  Q  L  N  E  M  F  L  Q  N  Q  H  V  H  A  G  S  S  S  I  F  S  Y  L  V  I  F  F  L  F  H  C  *  F  R  V  G  S  S  F  L  F  L  V  G  G  *  P  N  G  Q  S  E  E  S  P  P  S  R  F  L  E  K  Y  W  F  F  P  G  C  V  V  S  *  H  L  T  V  E  F  I  I  V  I  F  R  R  N  V  R  W  V  I  N  A  K  Y  A  W  T  T  L  W  G  M  I  S  L  I  V  K  E  D  P  *  M  L  C  G  T  S  T  K  M  Q  D  P  S  S  L  L  S  S  I  T  F  P  A  D  D  E  W  P  L  F  L  F  V  S  R  G  A  C  S  I  H  G  W  I  V   </second_frame>
            <third_frame>   A  *  N  L  D  *  *  *  R  T  V  F  F  F  H  L  L  Q  L  F  L  D  L  K  K  R  Y  F  I  T  S  R  G  G  L  F  N  I  F  V  Y  K  *  I  I  Q  F  R  F  Q  R  N  T  S  H  *  S  R  P  S  F  T  P  T  P  P  T  L  P  T  P  H  M  S  G  S  D  N  P  S  E  M  S  E  D  E  E  R  P  C  P  S  D  L  T  G  G  V  T  A  K  A  R  N  C  C  F  N  A  A  V  T  G  G  G  G  G  I  F  N  F  S  P  H  P  D  Q  V  L  E  N  V  L  E  N  V  L  C  F  L  T  D  R  R  D  R  N  A  A  S  L  V  S  K  S  W  Y  R  A  E  A  L  T  R  S  E  V  F  I  G  N  C  Y  A  V  S  P  T  R  V  T  T  R  F  K  R  V  T  S  V  A  I  K  G  K  P  R  F  A  D  F  S  L  L  P  P  D  W  G  A  H  F  T  P  W  A  S  V  L  G  D  S  Y  R  G  L  E  K  L  Y  L  K  R  M  S  I  S  D  D  D  L  G  L  L  A   : R  I  *  F  C  M  *  R  R  P  *  G  S  C  C  N  M  *  G  S  A  G  D  S  S  F  P  Y  R  S  S  G  R  C  R  C  P  S  F  *  S  R  P  P  C  N  F  *  G  L  Q  E  T  Q  V  H  L  I  F  L  P  K  N  D  K  C  S  C  Y  S  Y  V  K  E  L  P  G  P  C  G  I  P  A  M  H  Y  G  S  A  L  A  *  P  C  Y  K  *  T  D  G  *  R  L  W  G  Y  C  Q  E  L  *  E  A  Y  *  T  C  C  I  W  F  T  D  *  *  G  F  Q  L  H  W  T  I  W  K  T  S  P  N  L  I  S  C  F  C  R  K  Q  *  L  G  S  E  V  C  A  R  G  L  P  *  V  A  E  V  R  D  Q  G  L  P  V  W  R  F  V  F  A  F  W  F  T  P  L  L  Q  H  E  V  P  L  A  I  I  L  *  S  N  S  T  R  L  S  G  D  C  S  P  I  A  P  S  S  C  G  S  H  *  W  *  *  *  G  R  E  *  D  *  *  A  C  Q  Y  L  V  H  V  P  I  S  *  W  T  E  G  *  C  T  L  I  C  P  N  T  V  T  D  L  Y  R  R  *  E  L  S  A  V  N  *  L  V  P  L  R  N  D  L  T  I  F  L  G  R  D  A  L  G  K  S  V  A  N  F  L  V  E  K  T  N  G  D  P  L  A  K  A  V  S  Q  C  V  M  Y  S  M  L  V  S  M  D  V  I  V  Y  G  S  V  Q  R  L  F  F  S  S  K  E  N  L  E  D  K  T  L  L  Y  Q  *  S  F  L  F  F  I  F  M  E  P  S  I  S  K  W  S  Q  C  *  *  G  *  M  F  Q  T  Q  K  A  F  G  S  N  C  S  *  M  R  C  F  C  R  I  N  T  C  M  L  G  Q  V  V  S  F  H  T  L  L  F  F  F  C  F  I  V  S  L  E  L  E  V  L  F  Y  F  *  L  V  D  S  L  M  V  S  Q  K  N  L  L  H  L  A  F  *  K  N  I  G  S  F  Q  D  V  L  F  L  S  T  *  L  L  N  L  L  L  L  F  L  E  E  M  *  D  G  *  *  M  P  N  M  H  G  P  L  Y  G  E  *  S  A  *  *  *  R  K  T  H  K  C  C  V  E  Q  V  Q  K  C  R  T  P  P  L  S  Y  P  P  L  P  F  Q  L  M  M  N  G  P  Y  F  S  L  Y  L  E  E  P  V  L  Y  M  D  G  *  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161356" stop="161345"/>
                    <exon start="160291" stop="159527"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYWRVFDSVCDEGLEAVAATCKDLREIRVFPIEAREDADAPVSEVGLLAISEGCRKLKSILYFCQKMTNAAVIAMSKNCPDLVVFRLCIMGRHLPDHVTNEPMDEGFGAIVKNCKKLTRLAVSGLLTDRAFSYIGQYGKLVRTLSVAFAGNSDLALKYVLEGCPKLQKLEIRDCPFGDLSLRSGLHHYYNMRFLWLSSCRVTLQGCQEIARQLPRLVVEVISGDDEEGSETNEHVNTLYMYRSLDGPRADVPSFVQIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161912" stop="161345"/>
                    <exon start="160291" stop="160284"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRPSFTPTPPTLPTPHMSGSDNPSEMSEDEERPCPSDLTGGVTAKARNCCFNAAVTGGGGGIFNFSPHPDQVLENVLENVLCFLTDRRDRNAASLVSKSWYRAEALTRSEVFIGNCYAVSPTRVTTRFKRVTSVAIKGKPRFADFSLLPPDWGAHFTPWASVLGDSYRGLEKLYLKRMSISDDDLGLLARI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159485" stop="159252"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVPLRNDLTIFLGRDALGKSVANFLVEKTNGDPLAKAVSQCVMYSMLVSMDVIVYGSVQRLFFSSKENLEDKTLLYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="160546" e_stop="160381"/>
            <exon e_start="160291" e_stop="158672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="160546" e_stop="160381" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="1.000">
            <gDNA_intron_boundary i_start="160380" i_stop="160292" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="160291" e_stop="158672" e_length="1620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160546" stop="160381"/>
              <exon start="160291" stop="159886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160454" stop="160381"/>
              <exon start="160291" stop="159980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160269" stop="159599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160260" stop="159871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160258" stop="159711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160141" stop="159569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160141" stop="159694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160139" stop="159628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160139" stop="159629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160139" stop="159651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160139" stop="159730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159812" stop="159090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159434" stop="158838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159434" stop="158879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158943" stop="158672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158943" stop="158672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556239" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGGTCTGTCTCTCTGGTTTCAGGGAAATTGCTCCTGAATATCTGCCTGCAATCTATCCAGTTTGTGGCAATCTGACCTCTCTTAATTTAAGCTATGGTGCCAACATTAATACTGAACAATTCAAGTCTGTCATCAGCCGCTGCCATAAGCTCCAAGTATTGTGG : GTATTTGATTCTGTATGTGACGAAGGCCTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAGTGGTGATGATGAGGAAGGGAGTGAGACTAATGAGCATGTCAATACCTTGTACATGTACCGATCTCTTGATGGACCGAGGGCTGATGTACCCTCATTTGTCCAAATACTGTGACCGACCTTTATAGAAGATAGGAACTTTCTGCAGTCAATTGATTGGTACCTTTGAGAAATGATTTAACTATTTTCTTGGGAAGAGATGCTCTCGGGAAATCTGTTGCAAATTTCCTTGTAGAGAAAACGAATGGTGATCCTCTTGCAAAAGCAGTGAGCCAATGTGTAATGTATTCAATGCTGGTCTCCATGGATGTCATTGTATATGGTTCCGTACAGAGATTGTTTTTTTCCAGCAAGGAAAATCTAGAAGACAAAACGTTGTTGTATCAGTAATCTTTTCTATTCTTCATATTCATGGAGCCTTCAATTAGCAAGTGGAGTCAATGCTAGTAAGGGTAGATGTTCCAAACTCAAAAGGCTTTTGGATCAAATTGCAGCTGAATGAGATGTTTTTGCAGAATCAACACGTGCATGCTGGGTCAAGTAGTATCTTTTCATACCTTGTTATTTTTTTTTTGTTTCATTGTTAGTTTAGAGTTGGAAGTTCTTTTTTATTTTTAGTTGGTGGATAGCCTAATGGTCAGTCAGAAGAATCTCCTCCATCTCGCTTTCTAGAAAAATATTGGTTCTTTCCAGGATGTGTTGTTTCTTAGCACCTGACTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGTAATAAATGCCAAATATGCATGGACCACTTTATGGGGAATGATCAGCTTGATAGTGAAGGAAGACCCATAAATGTTGTGTGGAACAAGTACAAAAATGCAGGACCCCTCCTCTCTCTTATCCTCCATTACCTTTCCAGCTGATGATGAATGGCCCTTATTTCTCTTTGTATCTCGAGGAGCCTGTTCTATACATGGATGGATAGTACA</gDNA_template>
            <first_frame> H  G  L  S  L  W  F  Q  G  N  C  S  *  I  S  A  C  N  L  S  S  L  W  Q  S  D  L  S  *  F  K  L  W  C  Q  H  *  Y  *  T  I  Q  V  C  H  Q  P  L  P  *  A  P  S  I  V   : G  I  *  F  C  M  *  R  R  P  *  G  S  C  C  N  M  *  G  S  A  G  D  S  S  F  P  Y  R  S  S  G  R  C  R  C  P  S  F  *  S  R  P  P  C  N  F  *  G  L  Q  E  T  Q  V  H  L  I  F  L  P  K  N  D  K  C  S  C  Y  S  Y  V  K  E  L  P  G  P  C  G  I  P  A  M  H  Y  G  S  A  L  A  *  P  C  Y  K  *  T  D  G  *  R  L  W  G  Y  C  Q  E  L  *  E  A  Y  *  T  C  C  I  W  F  T  D  *  *  G  F  Q  L  H  W  T  I  W  K  T  S  P  N  L  I  S  C  F  C  R  K  Q  *  L  G  S  E  V  C  A  R  G  L  P  *  V  A  E  V  R  D  Q  G  L  P  V  W  R  F  V  F  A  F  W  F  T  P  L  L  Q  H  E  V  P  L  A  I  I  L  *  S  N  S  T  R  L  S  G  D  C  S  P  I  A  P  S  S  C  G  S  H  *  W  *  *  *  G  R  E  *  D  *  *  A  C  Q  Y  L  V  H  V  P  I  S  *  W  T  E  G  *  C  T  L  I  C  P  N  T  V  T  D  L  Y  R  R  *  E  L  S  A  V  N  *  L  V  P  L  R  N  D  L  T  I  F  L  G  R  D  A  L  G  K  S  V  A  N  F  L  V  E  K  T  N  G  D  P  L  A  K  A  V  S  Q  C  V  M  Y  S  M  L  V  S  M  D  V  I  V  Y  G  S  V  Q  R  L  F  F  S  S  K  E  N  L  E  D  K  T  L  L  Y  Q  *  S  F  L  F  F  I  F  M  E  P  S  I  S  K  W  S  Q  C  *  *  G  *  M  F  Q  T  Q  K  A  F  G  S  N  C  S  *  M  R  C  F  C  R  I  N  T  C  M  L  G  Q  V  V  S  F  H  T  L  L  F  F  F  C  F  I  V  S  L  E  L  E  V  L  F  Y  F  *  L  V  D  S  L  M  V  S  Q  K  N  L  L  H  L  A  F  *  K  N  I  G  S  F  Q  D  V  L  F  L  S  T  *  L  L  N  L  L  L  L  F  L  E  E  M  *  D  G  *  *  M  P  N  M  H  G  P  L  Y  G  E  *  S  A  *  *  *  R  K  T  H  K  C  C  V  E  Q  V  Q  K  C  R  T  P  P  L  S  Y  P  P  L  P  F  Q  L  M  M  N  G  P  Y  F  S  L  Y  L  E  E  P  V  L  Y  M  D  G  *  Y  </first_frame>
            <second_frame>  M  V  C  L  S  G  F  R  E  I  A  P  E  Y  L  P  A  I  Y  P  V  C  G  N  L  T  S  L  N  L  S  Y  G  A  N  I  N  T  E  Q  F  K  S  V  I  S  R  C  H  K  L  Q  V  L  W  :  V  F  D  S  V  C  D  E  G  L  E  A  V  A  A  T  C  K  D  L  R  E  I  R  V  F  P  I  E  A  R  E  D  A  D  A  P  V  S  E  V  G  L  L  A  I  S  E  G  C  R  K  L  K  S  I  L  Y  F  C  Q  K  M  T  N  A  A  V  I  A  M  S  K  N  C  P  D  L  V  V  F  R  L  C  I  M  G  R  H  L  P  D  H  V  T  N  E  P  M  D  E  G  F  G  A  I  V  K  N  C  K  K  L  T  R  L  A  V  S  G  L  L  T  D  R  A  F  S  Y  I  G  Q  Y  G  K  L  V  R  T  L  S  V  A  F  A  G  N  S  D  L  A  L  K  Y  V  L  E  G  C  P  K  L  Q  K  L  E  I  R  D  C  P  F  G  D  L  S  L  R  S  G  L  H  H  Y  Y  N  M  R  F  L  W  L  S  S  C  R  V  T  L  Q  G  C  Q  E  I  A  R  Q  L  P  R  L  V  V  E  V  I  S  G  D  D  E  E  G  S  E  T  N  E  H  V  N  T  L  Y  M  Y  R  S  L  D  G  P  R  A  D  V  P  S  F  V  Q  I  L  *  P  T  F  I  E  D  R  N  F  L  Q  S  I  D  W  Y  L  *  E  M  I  *  L  F  S  W  E  E  M  L  S  G  N  L  L  Q  I  S  L  *  R  K  R  M  V  I  L  L  Q  K  Q  *  A  N  V  *  C  I  Q  C  W  S  P  W  M  S  L  Y  M  V  P  Y  R  D  C  F  F  P  A  R  K  I  *  K  T  K  R  C  C  I  S  N  L  F  Y  S  S  Y  S  W  S  L  Q  L  A  S  G  V  N  A  S  K  G  R  C  S  K  L  K  R  L  L  D  Q  I  A  A  E  *  D  V  F  A  E  S  T  R  A  C  W  V  K  *  Y  L  F  I  P  C  Y  F  F  F  V  S  L  L  V  *  S  W  K  F  F  F  I  F  S  W  W  I  A  *  W  S  V  R  R  I  S  S  I  S  L  S  R  K  I  L  V  L  S  R  M  C  C  F  L  A  P  D  C  *  I  Y  Y  C  Y  F  *  K  K  C  E  M  G  N  K  C  Q  I  C  M  D  H  F  M  G  N  D  Q  L  D  S  E  G  R  P  I  N  V  V  W  N  K  Y  K  N  A  G  P  L  L  S  L  I  L  H  Y  L  S  S  *  *  *  M  A  L  I  S  L  C  I  S  R  S  L  F  Y  T  W  M  D  S  T </second_frame>
            <third_frame>   W  S  V  S  L  V  S  G  K  L  L  L  N  I  C  L  Q  S  I  Q  F  V  A  I  *  P  L  L  I  *  A  M  V  P  T  L  I  L  N  N  S  S  L  S  S  A  A  A  I  S  S  K  Y  C  G :   Y  L  I  L  Y  V  T  K  A  L  R  Q  L  L  Q  H  V  R  I  C  G  R  F  E  F  S  L  S  K  L  G  K  M  Q  M  P  Q  F  L  K  *  A  S  L  Q  F  L  R  V  A  G  N  S  S  P  S  Y  I  S  A  K  K  *  Q  M  Q  L  L  *  L  C  Q  R  T  A  R  T  L  W  Y  S  G  Y  A  L  W  V  G  T  C  L  T  M  L  Q  M  N  R  W  M  K  A  L  G  L  L  S  R  T  V  R  S  L  L  D  L  L  Y  L  V  Y  *  L  I  G  L  S  V  T  L  D  N  M  E  N  *  S  E  P  Y  Q  L  L  L  P  E  T  V  T  W  L  *  S  M  C  S  R  A  A  L  S  C  R  S  *  R  S  G  I  A  R  L  E  I  C  L  C  V  L  V  Y  T  T  I  T  T  *  G  S  F  G  Y  H  L  V  E  *  L  Y  K  V  V  R  R  L  L  A  N  C  P  V  *  L  W  K  S  L  V  V  M  M  R  K  G  V  R  L  M  S  M  S  I  P  C  T  C  T  D  L  L  M  D  R  G  L  M  Y  P  H  L  S  K  Y  C  D  R  P  L  *  K  I  G  T  F  C  S  Q  L  I  G  T  F  E  K  *  F  N  Y  F  L  G  K  R  C  S  R  E  I  C  C  K  F  P  C  R  E  N  E  W  *  S  S  C  K  S  S  E  P  M  C  N  V  F  N  A  G  L  H  G  C  H  C  I  W  F  R  T  E  I  V  F  F  Q  Q  G  K  S  R  R  Q  N  V  V  V  S  V  I  F  S  I  L  H  I  H  G  A  F  N  *  Q  V  E  S  M  L  V  R  V  D  V  P  N  S  K  G  F  W  I  K  L  Q  L  N  E  M  F  L  Q  N  Q  H  V  H  A  G  S  S  S  I  F  S  Y  L  V  I  F  F  L  F  H  C  *  F  R  V  G  S  S  F  L  F  L  V  G  G  *  P  N  G  Q  S  E  E  S  P  P  S  R  F  L  E  K  Y  W  F  F  P  G  C  V  V  S  *  H  L  T  V  E  F  I  I  V  I  F  R  R  N  V  R  W  V  I  N  A  K  Y  A  W  T  T  L  W  G  M  I  S  L  I  V  K  E  D  P  *  M  L  C  G  T  S  T  K  M  Q  D  P  S  S  L  L  S  S  I  T  F  P  A  D  D  E  W  P  L  F  L  F  V  S  R  G  A  C  S  I  H  G  W  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="160545" stop="160381"/>
                    <exon start="160291" stop="159527"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVCLSGFREIAPEYLPAIYPVCGNLTSLNLSYGANINTEQFKSVISRCHKLQVLWVFDSVCDEGLEAVAATCKDLREIRVFPIEAREDADAPVSEVGLLAISEGCRKLKSILYFCQKMTNAAVIAMSKNCPDLVVFRLCIMGRHLPDHVTNEPMDEGFGAIVKNCKKLTRLAVSGLLTDRAFSYIGQYGKLVRTLSVAFAGNSDLALKYVLEGCPKLQKLEIRDCPFGDLSLRSGLHHYYNMRFLWLSSCRVTLQGCQEIARQLPRLVVEVISGDDEEGSETNEHVNTLYMYRSLDGPRADVPSFVQIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159485" stop="159252"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVPLRNDLTIFLGRDALGKSVANFLVEKTNGDPLAKAVSQCVMYSMLVSMDVIVYGSVQRLFFSSKENLEDKTLLYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="162082" e_stop="161257"/>
            <exon e_start="160879" e_stop="160591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.989" e_score="0.993"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="162082" e_stop="161257" e_length="826"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.989">
            <gDNA_intron_boundary i_start="161256" i_stop="160880" i_length="377"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="160879" e_stop="160591" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162082" stop="161330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162082" stop="161334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162082" stop="161359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161829" stop="161304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161673" stop="161257"/>
              <exon start="160879" stop="160591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161548" stop="161257"/>
              <exon start="160879" stop="160754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161490" stop="161257"/>
              <exon start="160879" stop="160623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161489" stop="161257"/>
              <exon start="160879" stop="160624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTAAAATCTTGATTAGTGATAAAGAACTGTTTTTTTTTTTCATCTTCTTCAACTCTTCCTGGATCTGAAAAAAAGATATTTTATTACTTCAAGAGGGGGTTTATTTAATATTTTTGTTTATAAATAAATTATTCAATTCAGATTTCAGAGAAACACTTCCCATTAATCTAGACCCTCTTTTACCCCCACCCCACCCACCCTACCCACCCCCCACATGAGTGGTAGTGACAATCCTTCAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGTGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAG : GCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTATAGACTTTGAGGCATTGGAGAAGCTAGTAATCAGGTCACCTAGTTTGAAGAGACTAAGGTTGAATCGGTTTGTTTCTATTACTCAACTGTATCGGTTGATGATTCGAGCTCCACAGCTTACCAATCTGGGAACAGGCTCTTTTGGCGCCTCAACGGTCACTGAT</gDNA_template>
            <first_frame> K  L  K  I  L  I  S  D  K  E  L  F  F  F  F  I  F  F  N  S  S  W  I  *  K  K  D  I  L  L  L  Q  E  G  V  Y  L  I  F  L  F  I  N  K  L  F  N  S  D  F  R  E  T  L  P  I  N  L  D  P  L  L  P  P  P  H  P  P  Y  P  P  P  T  *  V  V  V  T  I  L  Q  R  C  L  K  M  R  S  V  L  V  L  Q  I  S  P  V  V  L  L  Q  K  Q  G  T  V  A  L  T  P  P  L  P  V  V  E  G  G  F  L  T  F  R  H  T  Q  I  K  F  L  K  M  C  W  K  M  F  F  A  S  *  L  I  A  V  T  V  T  L  H  P  L  *  A  N  L  G  I  G  L  R  L  *  P  D  P  K  C  L  L  A  T  V  M  L  F  R  R  P  G  L  R  P  V  S  R  G  *  P  L  W  P  L  K  G  N  L  G  L  L  I  S  V  C  F  L  Q  I  G  V  L  T  L  L  L  G  L  R  F  W  V  I  L  I  V  A  L  R  N  C  I  S  N  V  C  P  Y  L  M  M  I  *  V  Y  W  R  V  V  S  P  I  S  K  S  L  F  L  Y  A  V  K  V  L  G  L  V  D  L  L  L  *  P  V  I  A   : G  K  L  E  C  L  I  *  L  S  L  R  Y  L  T  M  K  W  T  G  F  P  T  S  L  R  T  K  R  V  W  S  L  *  P  L  I  V  L  N  A  L  *  T  L  R  H  W  R  S  *  *  S  G  H  L  V  *  R  D  *  G  *  I  G  L  F  L  L  L  N  C  I  G  *  *  F  E  L  H  S  L  P  I  W  E  Q  A  L  L  A  P  Q  R  S  L   </first_frame>
            <second_frame>  S  L  K  S  *  L  V  I  K  N  C  F  F  F  S  S  S  S  T  L  P  G  S  E  K  K  I  F  Y  Y  F  K  R  G  F  I  *  Y  F  C  L  *  I  N  Y  S  I  Q  I  S  E  K  H  F  P  L  I  *  T  L  F  Y  P  H  P  T  H  P  T  H  P  P  H  E  W  *  *  Q  S  F  R  D  V  *  R  *  G  A  S  L  S  F  R  S  H  R  W  C  Y  C  K  S  K  E  L  L  L  *  R  R  R  Y  R  W  W  R  G  D  F  *  L  F  A  T  P  R  S  S  S  *  K  C  A  G  K  C  S  L  L  L  N  *  S  P  *  P  *  R  C  I  P  C  K  Q  I  L  V  S  G  *  G  F  N  Q  I  R  S  V  Y  W  Q  L  L  C  C  F  A  D  P  G  Y  D  P  F  Q  E  G  D  L  C  G  H  *  R  E  T  *  V  C  *  F  Q  F  A  S  S  R  L  G  C  S  L  Y  S  L  G  F  G  F  G  *  F  L  S  W  P  *  E  I  V  S  Q  T  Y  V  H  I  *  *  *  S  R  F  I  G  A  L  F  P  Q  F  Q  R  A  C  S  C  M  L  *  R  F  W  D  *  W  T  C  Y  C  S  P  *  L  Q  :  A  N  *  S  A  *  S  D  *  V  *  G  I  *  R  *  S  G  L  D  F  L  L  P  *  E  Q  N  V  F  G  V  F  D  L  *  L  C  *  M  P  Y  R  L  *  G  I  G  E  A  S  N  Q  V  T  *  F  E  E  T  K  V  E  S  V  C  F  Y  Y  S  T  V  S  V  D  D  S  S  S  T  A  Y  Q  S  G  N  R  L  F  W  R  L  N  G  H  *  </second_frame>
            <third_frame>   A  *  N  L  D  *  *  *  R  T  V  F  F  F  H  L  L  Q  L  F  L  D  L  K  K  R  Y  F  I  T  S  R  G  G  L  F  N  I  F  V  Y  K  *  I  I  Q  F  R  F  Q  R  N  T  S  H  *  S  R  P  S  F  T  P  T  P  P  T  L  P  T  P  H  M  S  G  S  D  N  P  S  E  M  S  E  D  E  E  R  P  C  P  S  D  L  T  G  G  V  T  A  K  A  R  N  C  C  F  N  A  A  V  T  G  G  G  G  G  I  F  N  F  S  P  H  P  D  Q  V  L  E  N  V  L  E  N  V  L  C  F  L  T  D  R  R  D  R  N  A  A  S  L  V  S  K  S  W  Y  R  A  E  A  L  T  R  S  E  V  F  I  G  N  C  Y  A  V  S  P  T  R  V  T  T  R  F  K  R  V  T  S  V  A  I  K  G  K  P  R  F  A  D  F  S  L  L  P  P  D  W  G  A  H  F  T  P  W  A  S  V  L  G  D  S  Y  R  G  L  E  K  L  Y  L  K  R  M  S  I  S  D  D  D  L  G  L  L  A  R  C  F  P  N  F  K  E  L  V  L  V  C  C  E  G  F  G  T  S  G  L  A  I  V  A  R  D  C  R :   Q  I  R  V  L  D  L  I  E  S  E  V  S  D  D  E  V  D  W  I  S  Y  F  P  E  N  K  T  C  L  E  S  L  T  F  D  C  V  E  C  P  I  D  F  E  A  L  E  K  L  V  I  R  S  P  S  L  K  R  L  R  L  N  R  F  V  S  I  T  Q  L  Y  R  L  M  I  R  A  P  Q  L  T  N  L  G  T  G  S  F  G  A  S  T  V  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161912" stop="161257"/>
                    <exon start="160879" stop="160591"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRPSFTPTPPTLPTPHMSGSDNPSEMSEDEERPCPSDLTGGVTAKARNCCFNAAVTGGGGGIFNFSPHPDQVLENVLENVLCFLTDRRDRNAASLVSKSWYRAEALTRSEVFIGNCYAVSPTRVTTRFKRVTSVAIKGKPRFADFSLLPPDWGAHFTPWASVLGDSYRGLEKLYLKRMSISDDDLGLLARCFPNFKELVLVCCEGFGTSGLAIVARDCRQIRVLDLIESEVSDDEVDWISYFPENKTCLESLTFDCVECPIDFEALEKLVIRSPSLKRLRLNRFVSITQLYRLMIRAPQLTNLGTGSFGASTVTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="160694" PGL_stop="160850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="160694" e_stop="160850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="160694" e_stop="160850" e_length="157"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160694" stop="160850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCTTAGTCTCTTCAAACTAGGTGACCTGATTACTAGCTTCTCCAATGCCTCAAAGTCTATAGGGCATTCAACACAATCAAAGGTCAAAGACTCCAAACACGTTTTGTTCTCAGGGAAGTAGGAAATCCAGTCCACTTCATCGTCAGATACCTCAG</gDNA_template>
            <first_frame> N  L  S  L  F  K  L  G  D  L  I  T  S  F  S  N  A  S  K  S  I  G  H  S  T  Q  S  K  V  K  D  S  K  H  V  L  F  S  G  K  *  E  I  Q  S  T  S  S  S  D  T  S  </first_frame>
            <second_frame>  T  L  V  S  S  N  *  V  T  *  L  L  A  S  P  M  P  Q  S  L  *  G  I  Q  H  N  Q  R  S  K  T  P  N  T  F  C  S  Q  G  S  R  K  S  S  P  L  H  R  Q  I  P  Q </second_frame>
            <third_frame>   P  *  S  L  Q  T  R  *  P  D  Y  *  L  L  Q  C  L  K  V  Y  R  A  F  N  T  I  K  G  Q  R  L  Q  T  R  F  V  L  R  E  V  G  N  P  V  H  F  I  V  R  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0049I21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="183616" PGL_stop="185460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="183992" e_stop="184503"/>
            <exon e_start="184588" e_stop="185460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.996"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="183992" e_stop="184503" e_length="512"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="184588" e_stop="185460" e_length="873"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="183992" stop="184503"/>
              <exon start="184588" stop="184818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="183997" stop="184503"/>
              <exon start="184588" stop="184806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="183997" stop="184503"/>
              <exon start="184588" stop="184802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="183997" stop="184503"/>
              <exon start="184588" stop="184739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="183997" stop="184503"/>
              <exon start="184588" stop="184679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="183998" stop="184492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="184006" stop="184406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="184008" stop="184503"/>
              <exon start="184588" stop="184845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="184013" stop="184503"/>
              <exon start="184588" stop="184821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="184013" stop="184503"/>
              <exon start="184588" stop="184608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="184411" stop="184503"/>
              <exon start="184588" stop="184877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="184411" stop="184503"/>
              <exon start="184588" stop="184870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="184702" stop="185290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414886" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="184752" stop="185460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="184917" stop="185305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221443" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGTCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG : GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGGGGTGGGGGTGGAGGGAGTGGTGGGGTGGGTGGTTCAAGAAAGAGGTTTAGGACAAAGTTCACAGGAGACCAAAAGGATAAAATGTTGGCATTTGCAGAAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTTTATAAGGTAAAAAAAAGTAAATCAAAGCATATGTAGTATCTATTTGATGGAGCTAGCTAGGAGGGAAAAAAAATTGGAACAAGGAAGCTAGTTTTAATTAATTAGATCATCATTAAGCCAAGGATTTGTTGTAAGAGAGTACTATTATTATGATTATTATTAACATTTTGATGATAAGTAACTTGTTTAGGGTTGCTAGTTACAAGTACGTACTAGCTAGACATTGTTAGTGAGTCAGTCGGTCACCTTTGGTACTTTCTTTATTTAAATTATTTTCTTCCATCTGAATATTTTTACGTGTTATTGGACGATATCTTATGCAATATTGATGA</gDNA_template>
            <first_frame> *  C  P  H  P  L  L  S  L  I  F  S  S  D  L  H  L  S  H  H  *  S  F  S  P  F  S  V  F  F  S  S  L  T  I  K  I  L  *  I  Y  N  N  P  T  L  D  L  F  F  F  F  N  L  R  *  C  R  F  L  F  F  W  N  S  Q  F  F  K  I  N  S  *  Y  I  *  S  V  K  E  K  K  K  C  V  V  R  *  L  R  S  E  N  *  D  G  I  *  *  *  P  R  R  A  G  T  R  N  W  R  C  G  S  G  K  L  C  N  D  G  E  Q  *  W  K  R  R  R  D  F  H  *  *  Y  W  *  K  K  *  C  *  V  *  R  V  F  E  E  S  R  G  R  H  R  W  P  R  P  G  W  V  W  R  I  Y  A  G  R  *  R  R :   Y  Y  G  C  T  *  M  C  G  V  *  L  P  *  E  F  P  P  *  G  S  G  R  *  G  I  S  S  Y  P  T  S  P  P  Y  S  S  P  P  S  P  S  P  I  F  T  F  F  F  L  S  N  H  P  P  S  I  W  L  P  T  C  *  P  T  P  T  S  A  P  F  G  A  A  I  Y  F  *  G  R  R  R  Y  V  E  P  *  *  *  W  G  W  G  W  R  E  W  W  G  G  W  F  K  K  E  V  *  D  K  V  H  R  R  P  K  G  *  N  V  G  I  C  R  K  I  G  V  A  Y  A  K  A  R  *  G  I  S  A  A  V  L  C  R  D  K  C  Q  E  T  C  F  Q  S  L  D  A  Q  Q  Q  A  H  S  W  *  K  T  L  K  L  K  I  L  L  N  F  A  F  S  P  F  Y  K  V  K  K  S  K  S  K  H  M  *  Y  L  F  D  G  A  S  *  E  G  K  K  I  G  T  R  K  L  V  L  I  N  *  I  I  I  K  P  R  I  C  C  K  R  V  L  L  L  *  L  L  L  T  F  *  *  *  V  T  C  L  G  L  L  V  T  S  T  Y  *  L  D  I  V  S  E  S  V  G  H  L  W  Y  F  L  Y  L  N  Y  F  L  P  S  E  Y  F  Y  V  L  L  D  D  I  L  C  N  I  D   </first_frame>
            <second_frame>  D  V  H  T  L  F  F  L  L  S  S  L  L  I  F  I  F  L  I  T  N  H  F  P  L  S  L  F  F  F  L  L  S  L  S  K  F  S  K  Y  T  T  T  P  L  *  I  Y  F  F  S  L  T  *  D  D  V  D  F  Y  F  F  G  I  V  N  F  L  K  L  I  H  N  I  Y  K  V  *  K  K  R  K  S  V  *  L  G  S  *  E  V  K  I  K  M  E  F  D  D  D  Q  E  E  Q  E  Q  E  I  G  A  V  G  A  E  N  Y  V  T  T  G  N  N  S  G  R  E  E  G  I  S  T  S  S  I  G  R  K  S  N  V  R  Y  R  E  C  L  K  N  H  A  V  G  I  G  G  H  A  L  D  G  C  G  E  F  M  P  A  G  E  E   : G  T  M  D  A  L  K  C  A  A  C  N  C  H  R  N  F  H  R  K  E  A  E  G  E  V  F  H  H  T  P  P  P  H  L  T  H  H  H  H  H  H  P  Q  F  S  P  F  S  S  Y  R  I  T  H  H  P  S  G  Y  L  H  V  N  P  P  P  H  Q  R  P  L  A  L  P  S  T  S  R  D  D  E  D  M  S  N  P  S  S  S  G  G  G  G  G  G  S  G  G  V  G  G  S  R  K  R  F  R  T  K  F  T  G  D  Q  K  D  K  M  L  A  F  A  E  R  L  G  W  R  M  Q  K  Q  D  E  A  L  V  Q  Q  F  C  A  E  T  N  V  K  R  H  V  F  K  V  W  M  H  N  N  K  H  T  L  G  K  K  P  *  N  *  K  F  C  L  I  L  L  F  H  L  F  I  R  *  K  K  V  N  Q  S  I  C  S  I  Y  L  M  E  L  A  R  R  E  K  K  L  E  Q  G  S  *  F  *  L  I  R  S  S  L  S  Q  G  F  V  V  R  E  Y  Y  Y  Y  D  Y  Y  *  H  F  D  D  K  *  L  V  *  G  C  *  L  Q  V  R  T  S  *  T  L  L  V  S  Q  S  V  T  F  G  T  F  F  I  *  I  I  F  F  H  L  N  I  F  T  C  Y  W  T  I  S  Y  A  I  L  M  </second_frame>
            <third_frame>   M  S  T  P  S  S  F  S  Y  L  L  F  *  S  S  S  F  S  S  L  I  I  F  P  F  L  C  F  F  F  F  S  H  Y  Q  N  S  L  N  I  Q  Q  P  H  F  R  S  I  F  F  L  *  L  E  M  M  *  I  F  I  F  L  E  *  S  I  F  *  N  *  F  I  I  Y  I  K  C  E  R  K  E  K  V  C  S  *  V  V  E  K  *  K  L  R  W  N  L  M  M  T  K  K  S  R  N  K  K  L  A  L  W  E  R  K  I  M  *  R  R  G  T  I  V  E  E  K  K  G  F  P  L  V  V  L  V  E  K  V  M  L  G  I  E  S  V  *  R  I  T  R  S  A  *  V  A  T  P  W  M  G  V  A  N  L  C  R  P  V  K  K  :  V  L  W  M  H  L  N  V  R  R  V  I  A  I  G  I  S  T  V  R  K  R  K  V  R  Y  F  I  I  P  H  L  P  T  L  L  I  T  T  I  T  I  P  N  F  H  L  F  L  L  I  E  S  P  T  I  H  L  V  T  Y  M  L  T  H  P  H  I  S  A  L  W  R  C  H  L  L  L  G  T  T  K  I  C  R  T  L  V  V  V  G  V  G  V  E  G  V  V  G  W  V  V  Q  E  R  G  L  G  Q  S  S  Q  E  T  K  R  I  K  C  W  H  L  Q  K  D  W  G  G  V  C  K  S  K  M  R  H  *  C  S  S  F  V  Q  R  Q  M  S  R  D  M  F  S  K  F  G  C  T  T  T  S  T  L  L  V  K  N  P  K  T  K  N  F  A  *  F  C  F  F  T  F  L  *  G  K  K  K  *  I  K  A  Y  V  V  S  I  *  W  S  *  L  G  G  K  K  N  W  N  K  E  A  S  F  N  *  L  D  H  H  *  A  K  D  L  L  *  E  S  T  I  I  M  I  I  I  N  I  L  M  I  S  N  L  F  R  V  A  S  Y  K  Y  V  L  A  R  H  C  *  *  V  S  R  S  P  L  V  L  S  L  F  K  L  F  S  S  I  *  I  F  L  R  V  I  G  R  Y  L  M  Q  Y  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="184260" stop="184503"/>
                    <exon start="184588" stop="185090"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVKIKMEFDDDQEEQEQEIGAVGAENYVTTGNNSGREEGISTSSIGRKSNVRYRECLKNHAVGIGGHALDGCGEFMPAGEEGTMDALKCAACNCHRNFHRKEAEGEVFHHTPPPHLTHHHHHHPQFSPFSSYRITHHPSGYLHVNPPPHQRPLALPSTSRDDEDMSNPSSSGGGGGGSGGVGGSRKRFRTKFTGDQKDKMLAFAERLGWRMQKQDEALVQQFCAETNVKRHVFKVWMHNNKHTLGKKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="183616" e_stop="183634"/>
            <exon e_start="184183" e_stop="184503"/>
            <exon e_start="184588" e_stop="184661"/>
            <exon e_start="184957" e_stop="185128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.919" acc_prob="0.000" e_score="0.579"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.978"/>
          <exon-intron don_prob="0.000" acc_prob="0.743" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.579">
            <gDNA_exon_boundary e_start="183616" e_stop="183634" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.919" acc_prob="0.000">
            <gDNA_intron_boundary i_start="183635" i_stop="184182" i_length="548"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="184183" e_stop="184503" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="184588" e_stop="184661" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.743">
            <gDNA_intron_boundary i_start="184662" i_stop="184956" i_length="295"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="184957" e_stop="185128" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="183616" stop="183634"/>
              <exon start="184183" stop="184503"/>
              <exon start="184588" stop="184661"/>
              <exon start="184957" stop="185128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCATTCTCGTGCTTACT : TAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG : GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAG : AAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTT</gDNA_template>
            <first_frame> F  H  S  R  A  Y   : L  V  N  F  L  K  L  I  H  N  I  Y  K  V  *  K  K  R  K  S  V  *  L  G  S  *  E  V  K  I  K  M  E  F  D  D  D  Q  E  E  Q  E  Q  E  I  G  A  V  G  A  E  N  Y  V  T  T  G  N  N  S  G  R  E  E  G  I  S  T  S  S  I  G  R  K  S  N  V  R  Y  R  E  C  L  K  N  H  A  V  G  I  G  G  H  A  L  D  G  C  G  E  F  M  P  A  G  E  E   : G  T  M  D  A  L  K  C  A  A  C  N  C  H  R  N  F  H  R  K  E  A  E  G  E  :  K  D  W  G  G  V  C  K  S  K  M  R  H  *  C  S  S  F  V  Q  R  Q  M  S  R  D  M  F  S  K  F  G  C  T  T  T  S  T  L  L  V  K  N  P  K  T  K  N  F  A  *  F  C  F  F  T  F  </first_frame>
            <second_frame>  S  I  L  V  L  T  :  *  S  I  F  *  N  *  F  I  I  Y  I  K  C  E  R  K  E  K  V  C  S  *  V  V  E  K  *  K  L  R  W  N  L  M  M  T  K  K  S  R  N  K  K  L  A  L  W  E  R  K  I  M  *  R  R  G  T  I  V  E  E  K  K  G  F  P  L  V  V  L  V  E  K  V  M  L  G  I  E  S  V  *  R  I  T  R  S  A  *  V  A  T  P  W  M  G  V  A  N  L  C  R  P  V  K  K  :  V  L  W  M  H  L  N  V  R  R  V  I  A  I  G  I  S  T  V  R  K  R  K  V  R :   K  I  G  V  A  Y  A  K  A  R  *  G  I  S  A  A  V  L  C  R  D  K  C  Q  E  T  C  F  Q  S  L  D  A  Q  Q  Q  A  H  S  W  *  K  T  L  K  L  K  I  L  L  N  F  A  F  S  P  F </second_frame>
            <third_frame>   P  F  S  C  L  L :   S  Q  F  F  K  I  N  S  *  Y  I  *  S  V  K  E  K  K  K  C  V  V  R  *  L  R  S  E  N  *  D  G  I  *  *  *  P  R  R  A  G  T  R  N  W  R  C  G  S  G  K  L  C  N  D  G  E  Q  *  W  K  R  R  R  D  F  H  *  *  Y  W  *  K  K  *  C  *  V  *  R  V  F  E  E  S  R  G  R  H  R  W  P  R  P  G  W  V  W  R  I  Y  A  G  R  *  R  R :   Y  Y  G  C  T  *  M  C  G  V  *  L  P  *  E  F  P  P  *  G  S  G  R  *   : E  R  L  G  W  R  M  Q  K  Q  D  E  A  L  V  Q  Q  F  C  A  E  T  N  V  K  R  H  V  F  K  V  W  M  H  N  N  K  H  T  L  G  K  K  P  *  N  *  K  F  C  L  I  L  L  F  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="184260" stop="184503"/>
                    <exon start="184588" stop="184661"/>
                    <exon start="184957" stop="184998"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVKIKMEFDDDQEEQEQEIGAVGAENYVTTGNNSGREEGISTSSIGRKSNVRYRECLKNHAVGIGGHALDGCGEFMPAGEEGTMDALKCAACNCHRNFHRKEAEGEKDWGGVCKSKMRH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="185418" PGL_stop="184908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="185418" e_stop="184908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="185418" e_stop="184908" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185418" stop="184960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="185411" stop="184908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTCAGATGGAAGAAAATAATTTAAATAAAGAAAGTACCAAAGGTGACCGACTGACTCACTAACAATGTCTAGCTAGTACGTACTTGTAACTAGCAACCCTAAACAAGTTACTTATCATCAAAATGTTAATAATAATCATAATAATAGTACTCTCTTACAACAAATCCTTGGCTTAATGATGATCTAATTAATTAAAACTAGCTTCCTTGTTCCAATTTTTTTTCCCTCCTAGCTAGCTCCATCAAATAGATACTACATATGCTTTGATTTACTTTTTTTTACCTTATAAAAAGGTGAAAAAGCAAAATTAAGCAAAATTTTTAGTTTTAGGGTTTTTTACCAAGAGTGTGCTTGTTGTTGTGCATCCAAACTTTGAAAACATGTCTCTTGACATTTGTCTCTGCACAAAACTGCTGCACTAATGCCTCATCTTGCTTTTGCATACGCCACCCCAATCTTTCTGCAAATGCCAACATTTTATCCTTTTGGTCTCCTGTGAACTTTGTCCT</gDNA_template>
            <first_frame> Y  S  D  G  R  K  *  F  K  *  R  K  Y  Q  R  *  P  T  D  S  L  T  M  S  S  *  Y  V  L  V  T  S  N  P  K  Q  V  T  Y  H  Q  N  V  N  N  N  H  N  N  S  T  L  L  Q  Q  I  L  G  L  M  M  I  *  L  I  K  T  S  F  L  V  P  I  F  F  P  S  *  L  A  P  S  N  R  Y  Y  I  C  F  D  L  L  F  F  T  L  *  K  G  E  K  A  K  L  S  K  I  F  S  F  R  V  F  Y  Q  E  C  A  C  C  C  A  S  K  L  *  K  H  V  S  *  H  L  S  L  H  K  T  A  A  L  M  P  H  L  A  F  A  Y  A  T  P  I  F  L  Q  M  P  T  F  Y  P  F  G  L  L  *  T  L  S  </first_frame>
            <second_frame>  I  Q  M  E  E  N  N  L  N  K  E  S  T  K  G  D  R  L  T  H  *  Q  C  L  A  S  T  Y  L  *  L  A  T  L  N  K  L  L  I  I  K  M  L  I  I  I  I  I  I  V  L  S  Y  N  K  S  L  A  *  *  *  S  N  *  L  K  L  A  S  L  F  Q  F  F  F  P  P  S  *  L  H  Q  I  D  T  T  Y  A  L  I  Y  F  F  L  P  Y  K  K  V  K  K  Q  N  *  A  K  F  L  V  L  G  F  F  T  K  S  V  L  V  V  V  H  P  N  F  E  N  M  S  L  D  I  C  L  C  T  K  L  L  H  *  C  L  I  L  L  L  H  T  P  P  Q  S  F  C  K  C  Q  H  F  I  L  L  V  S  C  E  L  C  P </second_frame>
            <third_frame>   F  R  W  K  K  I  I  *  I  K  K  V  P  K  V  T  D  *  L  T  N  N  V  *  L  V  R  T  C  N  *  Q  P  *  T  S  Y  L  S  S  K  C  *  *  *  S  *  *  *  Y  S  L  T  T  N  P  W  L  N  D  D  L  I  N  *  N  *  L  P  C  S  N  F  F  S  L  L  A  S  S  I  K  *  I  L  H  M  L  *  F  T  F  F  Y  L  I  K  R  *  K  S  K  I  K  Q  N  F  *  F  *  G  F  L  P  R  V  C  L  L  L  C  I  Q  T  L  K  T  C  L  L  T  F  V  S  A  Q  N  C  C  T  N  A  S  S  C  F  C  I  R  H  P  N  L  S  A  N  A  N  I  L  S  F  W  S  P  V  N  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0049I21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 306 chains have been computed
$ 
$ memory statistics:
$ 1753616 bytes spliced alignments in total
$ 146 spliced alignments have been stored
$ 12011 bytes was the average size of a spliced alignment
$ 32824 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1727 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 365 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 14:57:08
-->
