<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 17:42:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332076" ref_strand="+" ref_description="SGN-U332076        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | hypothetical protein | chr4:3360743-3361252 FORWARD | Aliases: None(evalue: 6e-36, score=117) genbank/nr: SPla/RYanodine(evalue: 4e-44, score=144)">
      <seq>ttttcttgatggaatgaaattggtgtttgaatcacaaagaggagagtggggaaaagcagaaagagtgattggttgtggttacaatccaagccaaaagaaggtattttttcacagtggattcattgttagtacatgaaattttttgcaaaacagaagaatttggaaatccactttacccaattttagcatcaaatggtgatattttagtactagtaaatcttggacaaagtgtattcaaatatcaaccagcaaatctacataggacaccaaatccttgcttcattggtccaataatgcaaaatgattcatcaattcttggatatgaagacagcaaagaacttttctcaatgggtagaattgatgcacaatggcttaatagaagtaatacaagaagtaataacaatactgttaatagtttaaaacaagtattagattatgatttggagtctgaaggtgatttatttgaaattgttttagataattgtaatagttattcaagatctcctaaccctttgtaacatattataaaaagaataattcaaatgtaacattataattttgtacatgtttgtttttttttggggttgtatgagaccatgaaggggcactaaattagaagatattggttttattttatttgttaatttgttagttgttgtaactgttaagtcactaaattaaaggggatgttgattaaaaatgtattgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="1695" stop="3000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2003" g_stop="2711" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="721" r_length="710" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-U332076" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2003" e_stop="2711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAAATTGGTGTTTGAATCACAAAGAGGAGAGTGGGGAAAAGCAGAAAGAGTGATTGGTTGTGGTTACAATCCAAGCCAAAAGAAGGTA-TTTTTCACAGTGGATTCATTGTTAGTACATGAAATTTTTTGCAAAACAGAAGAATTTGGAAATCCACTTTACCCAATTTTAGCATCAAATGGTGATATTTTAGTACTAGTAAATCTTGGACAAAGTGTATTCAAATATCAACCAGCAAATCTACATAGGACACCAAATCCTTGCTTCATTGGTCCAATAATGCAAAATGATTCATCAATTCTTGGATATGAAGACAGCAAAGAACTTTTCTCAATGGGTAGAATTGATGCACAATGGCTTAATAGAAGTAATACAAGAAGTAATAACAATACTGTTAATAGTTTAAAACAAGTATTAGATTATGATTTGGAGTCTGAAGGTGATTTATTTGAAATTGTTTTAGATAATTGTAATAGTTATTCAAGATCTCCTAACCCTTTGTAACATATTATAAAAAGAATAATTCAAATGTAACATTATAATTTTGTACATGTTTTTTTTTTTTTGGGGTTGTATGAGACCATGAAGGGGCACTAAATTAGAAGATATTGGTTTTATTTTATTTGTTAATTTGTTAGTTGTTGTAACTGTTAAGTCACTAAATTAAAGATGATGTTGATTATAATTGTATTGTAATTTGATTAATG</genome_strand>
        <mrna_strand>GAATGAAATTGGTGTTTGAATCACAAAGAGGAGAGTGGGGAAAAGCAGAAAGAGTGATTGGTTGTGGTTACAATCCAAGCCAAAAGAAGGTATTTTTTCACAGTGGATTCATTGTTAGTACATGAAATTTTTTGCAAAACAGAAGAATTTGGAAATCCACTTTACCCAATTTTAGCATCAAATGGTGATATTTTAGTACTAGTAAATCTTGGACAAAGTGTATTCAAATATCAACCAGCAAATCTACATAGGACACCAAATCCTTGCTTCATTGGTCCAATAATGCAAAATGATTCATCAATTCTTGGATATGAAGACAGCAAAGAACTTTTCTCAATGGGTAGAATTGATGCACAATGGCTTAATAGAAGTAATACAAGAAGTAATAACAATACTGTTAATAGTTTAAAACAAGTATTAGATTATGATTTGGAGTCTGAAGGTGATTTATTTGAAATTGTTTTAGATAATTGTAATAGTTATTCAAGATCTCCTAACCCTTTGTAACATATTATAAAAAGAATAATTCAAATGTAACATTATAATTTTGTACATGTTTGTTTTTTTTTGGGGTTGTATGAGACCATGAAGGGGCACTAAATTAGAAGATATTGGTTTTATTTTATTTGTTAATTTGTTAGTTGTTGTAACTGTTAAGTCACTAAATTAAAGGGGATGTTGATTAAAAATGTATTGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332569" ref_strand="+" ref_description="SGN-U332569        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | kinesin-like protein (FRA1), identical to kinesin-like protein (Arabidopsis thaliana) GI:27260890; contains Pfam profile PF00225: Kinesin motor domain | chr5:19383709-19389978 FORWARD | Aliases: None(evalue: 2e-93, score=338) genbank/nr: gi|10177918|dbj|BAB11329.1| kinesin-like protein [Arabidopsis thaliana](evalue: 1e-91, score=338)">
      <seq>gaagaaggaatgagtatgagagacataaattgctagctttaaatcaacgacaaaagatggttcttcaaagaaagacggaggaggctgctatggcaactaagagactaaaagaattgctagaagcgcgtaaatcttcaggtcgcgagaactcagttactagcaatggccatgtagcaaatggacagagcaatgagaaatcgttgcaacgttggcttgatcatgagcttgaagtgatggtgaatgttcatgaagttcgtcatgagtatgagaagcaaagtcaagtacgagccgcacttggtgaagagctagcagttttgaaacaagttgatgaatttgcttcaaaaggactgagtcctccaaggggtaaaaatggcttctctagggcatcttcaatgtcgccaaatgctagaatggcacgaattgcttctctagagaatatgttacgcatttcatccaattctctagttgcaatggcttcacaactttcagaagcagaagaacgagagcgtgcttttagcaatcgtgggcgttggaaccaactacgctcgatgggggatgcaaaaagtttgctccaatatatgttcaattctcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="29279" stop="31482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29579" g_stop="29637" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29638" i_stop="30138" i_length="501">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30139" g_stop="30232" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="153" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30233" i_stop="30401" i_length="169">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30402" g_stop="30433" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="185" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30434" i_stop="30523" i_length="90">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30524" g_stop="30621" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="283" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30622" i_stop="30723" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="30822" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="382" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30823" i_stop="30969" i_length="147">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30970" g_stop="31182" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="595" r_length="213" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-U332569" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29579" e_stop="29637"/>
          <exon e_start="30139" e_stop="30232"/>
          <exon e_start="30402" e_stop="30433"/>
          <exon e_start="30524" e_stop="30621"/>
          <exon e_start="30724" e_stop="30822"/>
          <exon e_start="30970" e_stop="31182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGAATGAGTATGAGAGACATAAATTGCTAGCTTTAAATCAACGACAAAAGATGGTGAGCATTTTAAGTTCCTCTATGTCCTTGTGTTGTCTTTCATTCTTCTCCAACTGTTTTAGTGAAGAAACACTTGACGTACATTCTAGTTGTGACATCCAAAAAATCAATGTCTTTAAATGCTACAATTCTACTTCATGAAATGGATATGTGTAATTGAGCATTTGATTTGATCCTTGAAGAAAAATTCAGCCACTTGAACATCTATTTGTAGCAGAGTAGAAAAAATCCCGTTTCTTGAAATTTTTTACACTTTGATCACAAGTTCAGAACAGATCTTGTATTTCTTGAAGACCTAGCTCAAACAAAATGCAGCGTGTATTAGAGAGGAAACAGTACACCTCCTGCCCAATTGAAGCTATTGTACCTTTGACAGCTTTTGTTAAATGGCTAACATAAATTGATGGCTTACTAGAATAACATGCACAATAGTCAAGCTCGTGCTAGTAGGTGATCACAGTCAATATCTGAATGTTATATGGCATCATGGATTTATTTCAGGTTCTTCAAAGAAAGACGGAGGAGGCTGCTATGGCAACCAAGAGACTAAAAGAATTGCTAGAAGCGCGTAAATCTTCTGGTCGCGAGAACTCAGGTTTGCACTATATTTAGCTTTTATCTGATGCCTTTTTTGTGGATTACTATTTACTGGTGAATTCTATTTCTATTAAAAATATATTCTCTCATAGAAGGTTCCACTGATTTATGCTAGTCTTTGCATTTTAATTTGTTCAACTTACTAAAATGTTCTGTTTATCATGCAGTTACTAGCAACGGCCATGTAGCAAATGGACAGGTACCAATCTTGCTCCTTTTGGACTCTAATGGACTTTTGTCTTTATACCTATTTGATCAAATAATTTAGTCAAGTATCTTTTGTATTCAGAGCAATGAGAAATCGTTGCAACGTTGGCTTGATCATGAGCTTGAAGTGATGGTGAATGTTCATGAAGTTCGTCATGAGTATGAGAAGCAAAGTCAAGTGTATGTAACAAAACTTATTTTACCTAAATTAATCTTCTCTTAATGTGTGCACACTTAACATATTCTGGGTTGCTTTTTTGAAATGGTTTCTTTTCATCTCAGACGAGCCGCACTTGGTGAAGAGCTAGCAGTTTTGAAACAAGTTGATGAATTTGCTTCAAAAGGACTGAGTCCTCCAAGGGGTAAAAATGGCTTCTCTAGGTACATATACTGAATGCATCTCTATTCTATCTGCCAATAATGGATTCAGTATCTCCAAAATGCAGCCTTAAGTAGCACTAAAGAAAACATTTTAAGTGCTAAAGAAAGTTCACTCTAATGGATTTCTATTTGTGGTTATCTGTTCAGGGCATCTTCAATGTCGCCAAATGCTAGAATGGCACGAATTGCTTCTCTAGAGAATATGTTAGGCATTTCATCCAATTCTCTAGTTGCAATGGCTTCACAACTTTCAGAAGCAGAAGAACGAGAGCGAGCTTTTAGCAATCGTGGGCGTTGGAACCAACTACGCTCGATGGGGGATGCAAAAAGTTTGCTCCAATATATGTTCAATTCTCTTGC</genome_strand>
        <mrna_strand>GAAGAAGGAATGAGTATGAGAGACATAAATTGCTAGCTTTAAATCAACGACAAAAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCAAAGAAAGACGGAGGAGGCTGCTATGGCAACTAAGAGACTAAAAGAATTGCTAGAAGCGCGTAAATCTTCAGGTCGCGAGAACTCAG.........................................................................................................................................................................TTACTAGCAATGGCCATGTAGCAAATGGACAG..........................................................................................AGCAATGAGAAATCGTTGCAACGTTGGCTTGATCATGAGCTTGAAGTGATGGTGAATGTTCATGAAGTTCGTCATGAGTATGAGAAGCAAAGTCAAGT......................................................................................................ACGAGCCGCACTTGGTGAAGAGCTAGCAGTTTTGAAACAAGTTGATGAATTTGCTTCAAAAGGACTGAGTCCTCCAAGGGGTAAAAATGGCTTCTCTAG...................................................................................................................................................GGCATCTTCAATGTCGCCAAATGCTAGAATGGCACGAATTGCTTCTCTAGAGAATATGTTACGCATTTCATCCAATTCTCTAGTTGCAATGGCTTCACAACTTTCAGAAGCAGAAGAACGAGAGCGTGCTTTTAGCAATCGTGGGCGTTGGAACCAACTACGCTCGATGGGGGATGCAAAAAGTTTGCTCCAATATATGTTCAATTCTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318292" ref_strand="+" ref_description="SGN-U318292        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:19390124-19391537 REVERSE | Aliases: MCA23.17, MCA23_17(evalue: 5e-44, score=175) genbank/nr: hypothetical(evalue: 1e-46, score=190)">
      <seq>aaaaaattgaatgttgagggtgggaaggggcaaatattccagaaactgctagaaatatctggtggtctcttcgccatttctctattatcttcatctctctgtaaaaactccaatcaaatactaacccttgagtagaacaagagtaagaaataggaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggagccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccatccctactatatcccaaccttctgaacataatacagtggataaaccaattgaagtagacgctgatggaacttcaatactatctgaaactggcaggaaacagataatgtttgatgcattctctgacggaagcagctttgtttgcctacaatgtggtggtctggttagcacccatcgcaaagatgaacactactcattctggtgttgcaaaaattgagttagctttcaacttgaatgtattttagccagtgggtttctctagtatttgctcttggctccagatcaatgctctaactaggcatgttgctgtaagcattacatggtagctggagtaatgattgcacaggtcgcactgaaagttgtatggctatagatattgacaacaaaaatgtattcagtttcttggagtatgttgtgcactctgtactattcaagatgttttgaaataattgaagcatacatccttatagtgagcttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37918" stop="33342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37618" g_stop="37222" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="33643" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="1025" r_length="629" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33642" i_stop="33461" i_length="182">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33460" g_stop="33452" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1026" r_stop="1034" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-U318292" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1035</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37618" e_stop="37222"/>
          <exon e_start="34271" e_stop="33643"/>
          <exon e_start="33460" e_stop="33452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTGAATGTTGAGGGTGGGAAGGGGCAAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGTGGTGGTCTGGTTAGCACCCATCGCAAAGATGAACACTACTCATTCTGGTGTTGCAAAAATTGAGTTAGCTTTCAACTTGAATGTATTTTAGCCAGTGGGTTTCTCTAGTATTTGCTCTTGGCTCCAGATCAATGCTCTAACTAGGCATGTTGCTGTAAGCATTACATGGTAGCTGGAGTAATGATTGCACAGGTCGCACTGAAAGTTGTATGGCTATAGATATTGACAACAAAAATGTATTCAGTTTCTTGGAGTATGTTGTGCACTCTGTACTATTCAAGATGTTTTGAAATAATTGAAGCATATATCCTTATAGTGAGCTTGTAATCATGGTTTTCCTCTTGAGATTAGCTTCATAATTTACTGTTTGCACCAATTGATTATGAAGACTACCATTCTAGTGGCATAAAGGGTGACTTCCAAAACATATAGTCAGCAAAAGAAGAGCAATGCCAAAATAATAGATCTGTTGAAAAGACATTAAGTTCGTTTTGGTAGCTTGGGCCAGGTAAACAAA</genome_strand>
        <mrna_strand>AAAAAATTGAATGTTGAGGGTGGGAAGGGGCAAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGG-AAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGAGCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGTGGTGGTCTGGTTAGCACCCATCGCAAAGATGAACACTACTCATTCTGGTGTTGCAAAAATTGAGTTAGCTTTCAACTTGAATGTATTTTAGCCAGTGGGTTTCTCTAGTATTTGCTCTTGGCTCCAGATCAATGCTCTAACTAGGCATGTTGCTGTAAGCATTACATGGTAGCTGGAGTAATGATTGCACAGGTCGCACTGAAAGTTGTATGGCTATAGATATTGACAACAAAAATGTATTCAGTTTCTTGGAGTATGTTGTGCACTCTGTACTATTCAAGATGTTTTGAAATAATTGAAGCATACATCCTTATAGTGAGCTTGTA......................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340772" ref_strand="+" ref_description="SGN-U340772        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G43020.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr5:17272540-17274970 REVERSE | Aliases: MMG4.2, MMG4_2 (evalue: 1e-92, score=336) genbank/nr: putative(evalue: 1e-100, score=369)">
      <seq>cagatttcagtattgaggattgaagaagataacaatgaactggaagagaaggtgaaaagagtacaacaaggaatgcagcaagtgatgggtaaaagtgggagcttagtattctgtgcaggtgaggtgcaggtgtataccctggaacagctgatgagagcttctgctgagcttttaggtagaggaactatggggactacttacaaagcagtgcttgataaccgtctgattgtttgtgtgaaaagattagacggtgggagattggccggtacaagtcaagaagagtttgagcagcatatggaatcagtaggcgggcttaggcacccgaatttggttccttttcgggcttattttcaggcccgacaagaaaggcttttggtctatgattatcaacccaatggcagcctgttttctcttattcatggttccaagtcatcaagagcaaagccacttcactggacttcatgtttgaaaatagcagaggatgtagctcaaggactttcctacatccaccaagcatggaggcttgtccatggcaatctcaagtcctctaacgtcctcctcggctccgatttcgaggcgtgcataaccgactactgtctctccgtcctagctgtcccctcggacgatgagaatcctgattctgtagcctatcaggctccagaaattcgtaagctgaatcacaacaaccaccaccaccaccgccaagctagtgccaaggctgatgtctattcgtttggggttcttttgcttgaacttctaacggggaaaccatccttcggaacatccatatctaatgccagatgatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="41446" stop="39558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41152" g_stop="40733" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40732" i_stop="40245" i_length="488">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.109" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40244" g_stop="39858" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="809" r_length="388" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-U340772" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41152" e_stop="40733"/>
          <exon e_start="40244" e_stop="39858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGA-AGCAGTATTGAGGATTGAAGAAGATAACAATGAACTGGAAGAGAAGGTGAAAAGAGTACAACAAGGAATGCAGCAAGTGATGGGTAAAAGTGGGAGCTTAGTATTCTGTGCAGGTGAGGTGCAGGTGTATACCCTGGAACAGCTGATGAGAGCTTCTGCTGAGCTTTTAGGTAGAGGAACTATGGGGACTACTTACAAAGCAGTGCTTGATAACCGTCTGATTGTGTGTGTGAAGAGATTGGACGGTGGGAGATTGGCCGGTACAAGTCAAGAAGAGTTTGAGCAGCATATGGAATCAGTAGGCGGGCTTAGGCACCCGAATTTGGTTCCTTTTCGGGCTTATTTTCAGGCCCGACAAGAAAGGCTTTTGGTCTATGATTATCAACCCAATGGCAGCCTGTTTTCTCTTATTCATGGTACGTTCTTCTCTGTATATCTCGTATTTATTATTTATATTAAGATGCATATAAATTGTATGAAAAATAATATTATTTTGACCTTCGATAAGTAGAATGTAATTTAAATAAACGGAATATTTTGAATATGTTGTCCAATCAAATTGGGTCCATACACCATACCCTATTGTTTCAGTTTCTCAACCCCAAGGTTCTCACAAACACAGAGAATCCTGCAGCTGACCGTGATGACATTTTTGGACACATATTTCTGTCATCGTAAAATACTTTTATGTTTGTTTAGTGTCCTTATTATTAAAGATTATAGTATTAAAATTGAAGCTAGTTCTGTCTGCAGTAAGAGTTATTTAAATTTTGTTTCACGTGTGGTTGCGTAACGTGAAGTTAATAAGAGTACGGTGGTTAGTATAAATAATAGCTTTAATGCATATTTAATGCCACGGTGGTACTGAAATAAAGTTTGACTAGTCAACTTGCGACGTGTACAGGTTCCAAGTCATCAAGAGCAAAGCCACTTCACTGGACTTCATGTTTGAAAATAGCAGAGGATGTAGCTCAAGGACTTTCCTACATCCACCAAGCATGGAGGCTTGTCCATGGCAATCTCAAGTCCTCTAACGTCCTCCTCGGCTCCGATTTCGAGGCGTGCATAACCGACTACTGTCTCTCCGTCCTAGCTGTCCCCTCGGACGATGAGAATCCTGATTCTGTAGCCTATCAGGCTCCAGAAATTCGTAAGCTGAATCACAACAACCACAACTACCACCGCCAAGCTAGTGCCAAGGCTGATGTCTATTCGTTTGGGGTTCTTTTGCTTGAACTTCTAACGGGG-AAGCATCCTTCGGAACATCCATATCTAATGCCAGATGATATGA</genome_strand>
        <mrna_strand>CAGATTTCAGTATTGAGGATTGAAGAAGATAACAATGAACTGGAAGAGAAGGTGAAAAGAGTACAACAAGGAATGCAGCAAGTGATGGGTAAAAGTGGGAGCTTAGTATTCTGTGCAGGTGAGGTGCAGGTGTATACCCTGGAACAGCTGATGAGAGCTTCTGCTGAGCTTTTAGGTAGAGGAACTATGGGGACTACTTACAAAGCAGTGCTTGATAACCGTCTGATTGTTTGTGTGAAAAGATTAGACGGTGGGAGATTGGCCGGTACAAGTCAAGAAGAGTTTGAGCAGCATATGGAATCAGTAGGCGGGCTTAGGCACCCGAATTTGGTTCCTTTTCGGGCTTATTTTCAGGCCCGACAAGAAAGGCTTTTGGTCTATGATTATCAACCCAATGGCAGCCTGTTTTCTCTTATTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAAGTCATCAAGAGCAAAGCCACTTCACTGGACTTCATGTTTGAAAATAGCAGAGGATGTAGCTCAAGGACTTTCCTACATCCACCAAGCATGGAGGCTTGTCCATGGCAATCTCAAGTCCTCTAACGTCCTCCTCGGCTCCGATTTCGAGGCGTGCATAACCGACTACTGTCTCTCCGTCCTAGCTGTCCCCTCGGACGATGAGAATCCTGATTCTGTAGCCTATCAGGCTCCAGAAATTCGTAAGCTGAATCACAACAACCACCACCACCACCGCCAAGCTAGTGCCAAGGCTGATGTCTATTCGTTTGGGGTTCTTTTGCTTGAACTTCTAACGGGGAAACCATCCTTCGGAACATCCATATCTAATGCCAGATGATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317663" ref_strand="+" ref_description="SGN-U317663        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: AT4G24240.1 | Symbol: None | WRKY family transcription factor, contains Pfam profile: PF03106 WRKY DNA -binding domain | chr4:12571776-12573735 FORWARD | Aliases: T22A6.70, T22A6_70 (evalue: 1e-43, score=173) genbank/nr: gi|10798760|dbj|BAB16432.1| WRKY transcription factor NtEIG-D48 [Nicotiana tabacum](evalue: 9e-107, score=389)">
      <seq>ttgattagaataagaagttcctcccatttttctctctcatttttatttctatatcttcattagcttctacccctctcttcactctttacaatttccttcttcttcttcttcttcttcttcttctctctgttctatggtattgtaaacatggctgtagacttaatgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaactaccattaattttgcttctccatcgccggcgacttcgtttatgtcatcgttaacaggggaaacagagagcttacagcagtctttatcttctgggtttcaaataacaaatctttctcaggtttcatccgccggccgtccacctctttctacttcttcattcaaaaggaagtgtagttccatggacgataccgccctcaagtgcagcagcgccggtggttcctctggccgttgccactgcccaaagaaaagaaaatcaagagtcaaaagagtagtaagagtccctgctattagcatgaaaatggctgatattccacctgatgattattcatggagaaaatatggtcaaaaacccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58267" stop="56552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57967" g_stop="57063" g_length="905"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="914" r_length="914" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57062" i_stop="56957" i_length="106">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56956" g_stop="56852" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="915" r_stop="1019" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-U317663" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>1010</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57967" e_stop="57063"/>
          <exon e_start="56956" e_stop="56852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTAGAATAAGAATTTCCTCCCATTTTTCTCTCTCATTTTTATTTCTATATCTTCATTAGCTTCTACCCCTCTCTTCACTCTTTACAATTT-C--C-T-T-CTTCTTCTTC-T--TCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGGGTTTCAAATAACAAATCTTTCTCAGGTTTCATCCGCCGGCCGTCCACCTCTTTCTACTTCTTCATTCAAAAGGAAGTGTAGTTCCATGGACGATACCGCCCTCAAGTGCAGCAGCGCCGGTGGTTCCTCTGGCCGTTGCCACTGCCCAAAGAAAAGGTAAAAATCAACCCAAAGATTCCATTTTTATCACTATAAATCCATAAATATACAGATCTTTACAAATTTATCTGAGTTTTAACTGATCTATTAATAACTTATACAGAAAATCAAGAGTCAAAAGAGTAGTAAGAGTCCCTGCTATTAGCATGAAAATGGCTGATATTCCACCTGATGATTATTCATGGAGAAAATATGGTCAAAAACCCAT</genome_strand>
        <mrna_strand>TTGATTAGAATAAGAAGTTCCTCCCATTTTTCTCTCTCATTTTTATTTCTATATCTTCATTAGCTTCTACCCCTCTCTTCACTCTTTACAATTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGGGTTTCAAATAACAAATCTTTCTCAGGTTTCATCCGCCGGCCGTCCACCTCTTTCTACTTCTTCATTCAAAAGGAAGTGTAGTTCCATGGACGATACCGCCCTCAAGTGCAGCAGCGCCGGTGGTTCCTCTGGCCGTTGCCACTGCCCAAAGAAAAG..........................................................................................................AAAATCAAGAGTCAAAAGAGTAGTAAGAGTCCCTGCTATTAGCATGAAAATGGCTGATATTCCACCTGATGATTATTCATGGAGAAAATATGGTCAAAAACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322242" ref_strand="+" ref_description="SGN-U322242        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT5G43060.1 | Symbol: None | cysteine proteinase, putative / thiol protease, putative, similar to cysteine proteinase RD21A precursor (thiol protease) GI:435619, SP:P43297 from (Arabidopsis thaliana) | chr5:17286772-17289388 REVERSE | Aliases: MMG4.7, MMG4_7 (evalue: 4e-94, score=341) genbank/nr: gi|2828252|emb|CAA05894.1| CYP1 [Lycopersicon esculentum] >gi|5726641|gb|AAD48496.1| cysteine protease TDI-65 [Lycopersicon esculentum] (evalue: 4e-107, score=390)">
      <seq>gcgattcatctctccgctctaacaatctcgatcctcgtaatggtcgtgtcctccgccgccgtaacatcggcggcggcagaggacatgtcgattataagctacaacgaaaaacatcacacgatcggcgccggtcggaccgatgacgaggtcatgtctatgtacgaatcgtggttagttgaacacaaaaaagtgtacaacgctttgggagaaaaagataaacggttccagatctttaaggacaaccttaaatacatcgatgaacataacgctatgccggagaaaagttataagctcggtttgactaagtttgctgatctgaccaacgaggagtataggtcggtttatttgggtacgaagccggatgctagtcgcaggttgtcgagtagacaaagtgatcggtatgctccgaaggtcggagataggttgccggaatctgttgattgggtgaagaaaggtgtgcttgttggtgttaaggatcaaggacaatgtgggagttgctgggctttctcagcagttgctgccattgaagcagtaaacaaaataaagactggagactcgatctctttatccgagcaggagctagtagattgtgatacttcttctaacaatggttgtgacggtggtctcatggactatgcttttgaattcgttatcaaaaatggaggactagacactgaggaagattacccatatactggcgaggatggaagatgtgacctaacaaggaaaaatgccaaggttgtcaccattgacgggtatgaagatgttcctgctaatgatgaaaacgcaatgaaaaaggctatttgcagtcagcctgttagcgttgctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="70321" stop="73295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70621" g_stop="71110" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71111" i_stop="72556" i_length="1446">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72557" g_stop="72792" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="726" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72793" i_stop="72889" i_length="97">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72890" g_stop="72995" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="832" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-U322242" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70621" e_stop="71110"/>
          <exon e_start="72557" e_stop="72792"/>
          <exon e_start="72890" e_stop="72995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATTCATCTCTCCGCTCTAACAATCTCGATCCTCGTAATGGTCGTGTCCTCCGCCGCCGTAACATCGGCGGCGGCAGAGGACATGTCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTGGTATGTGTACCTCTTACTTGTTTTTGTTTCACTTTTTATTACTTTATTTGTTTTCGGAAAAGCATTATGACTTTTGTTGATTATAGTTGATAGTGTTTTTTTATTAATTTATTTATTTATATGAATCTGATATACTTCATGTGCTACTATATAAATTTCAAACAAGAGTAAAGTACAGAATAATGAAATGAGCTTATGAAAATGTAGGATCCATATTACTTTGTTGTTTTGATTCATCCAATTTTTAGATGGGTTGATATGTGATAAAAATTTAACCCAGTTCCAAATTAGTGAATATTGATTTGCTAAGAGAAAACATTAATCCATTTAAATAATCAAATAATACATCTTGAGTTATGCTAGTTCAATTCAAATAACTTTTGGACTGATGCTTTACTAAGTCTATCTATTTTAAATATTTAAGTCAGCTTATATATTTGACACCTGATCCGAATTTTGATCCTTTATTAGTTATCAGGGAAAAGAATTAGAAATATATTTGAAATTTAATCGAAATTGTTTAATATGATATTAAAATTTGGAATGAATATTTTATTTGTACACTATTTAATAATTTTAGGTAAAAAATGTTCATAAAATTTGAAATGTAACAACAATTTGGTCAAAATTGAAATATTTTTACCATTCGAATAGAAAGAGAATAATCTCATAACGAGTATTATACTTTATTTTAGATTTTTATCTGTAAAAATAAATTTCTCTAGAAACTTTAACATATAATTAACTACAAAATGAAAATGATGTTTAAATTTCTTTTCACCGTCATTATTTATGAACAACAACTGGTCAAACGTGATAACTACAAACAGCAAAACGTGCAACATGAATCATATGAATAGAAAAAGCCTATGTTATTATTCATCCGTGACTAATTTGTAATGTAAAAAGTGATGTTCGAATGTGCAATTATCAAGGGGTATTTATAAAAAGCAATTTGTATTTGTTAGAAAATTGTTTTTTTAATTAAAGTTAATGGTTCAATAATTAATATTCTCAACTCTATCATACCTAATAATTCCATTTGTTATTCTTAAATAGTAGTATAAGATTAGTTAGCATTCTCAATTACACTATCGGTTGGGGAGGAGACAAAATCATATGGGGTTGGATATATTTGTTTAACCCAATTGGAAATATTCTAAGTAAATATTTCCGTTTTATCGATGCTACTTTGCTGGCTTTGATTTCCAATATTTTAAATTTAAGACTATCTTTATTTAAATTTTAAAATAAATAAACAAATTCTCTTCGTATCTAAGTCAGTCTATTGGATTTGTCCAAACTCAATTGCTTTATTTTAAACTCTATATTTATATTATAAAAATCAGTAAGTATAGTAGACGTCATTGTCCTAGAATTTAGCTGTGTGTTATATTATGTTGGTAGAAGAAGGATTTTAATTTAGACGTTTGGAAAATGAAACAGGGAGTTGCTGGGCTTTCTCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGAGCTAGTAGATTGTGATACTTCTTCTAACAATGGTTGTGACGGTGGTCTCATGGACTATGCTTTTGAATTCGTTATCAAAAATGGAGGACTAGACACTGAGGAAGATTACCCATATACTGGCGAGGATGGAAGATGTGACCTAACAAGGGTTAGTACCGCGTTCTTAGTCTTGAAGGACTTATGGAAATGAAACTAATATACTTTCAAGTTATCACAATTAAAGATCTTGTTTGAAACAATTGCAGAAAAATGCCAAGGTTGTCACCATTGACGGGTATGAAGATGTTCCTGCTAATGATGAAAACGCAATGAAAAAGGCTATTGCAAGTCAGCCTGTTAGCGTTGCTATTG</genome_strand>
        <mrna_strand>GCGATTCATCTCTCCGCTCTAACAATCTCGATCCTCGTAATGGTCGTGTCCTCCGCCGCCGTAACATCGGCGGCGGCAGAGGACATGTCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCTGGGCTTTCTCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGAGCTAGTAGATTGTGATACTTCTTCTAACAATGGTTGTGACGGTGGTCTCATGGACTATGCTTTTGAATTCGTTATCAAAAATGGAGGACTAGACACTGAGGAAGATTACCCATATACTGGCGAGGATGGAAGATGTGACCTAACAAGG.................................................................................................AAAAATGCCAAGGTTGTCACCATTGACGGGTATGAAGATGTTCCTGCTAATGATGAAAACGCAATGAAAAAGGCTATTTGCAGTCAGCCTGTTAGCGTTGCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317291" ref_strand="+" ref_description="SGN-U317291        Tomato 200607 #1 [22 ESTs aligned] arabidopsis/peptide: AT1G47128.1 | Symbol: None | cysteine proteinase (RD21A) / thiol protease, identical to SP:P43297 Cysteine proteinase RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana}, thiol protease RD21A SP:P43297 from (Arabidopsis thaliana) | chr1:17285265-17288110 REVERSE | Aliases: F2G19.31, F2G19_31 (evalue: 6e-64, score=241) genbank/nr: gi|5777889|emb|CAB53515.1| cysteine protease [Solanum tuberosum](evalue: 9e-77, score=290)">
      <seq>gctattgcaagtcagcctgttagcgttgctattgaagctggtggcaaagacttccagcactataaatcgggcatctttactgggaagtgtggcgcagcagtggaccatggtgtggttgcagtgggatatggtagcgaaaatggcatggattattggattgtgaggaactcatggggtgcttcctggggagaacacggctacctcaggatgcagcgtaacattgctaacccaaagggtttgtgtggtattgctacagttgtttcttaccctgtcaagacaggccaaaatcccccgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacaatattgaaacaagatttcattgttctgctgtttctgatttatgtaaatatttcctttatttcttcatcagggatgactatctgctactttcacaatgcagtttattattccatgtgatgcttctactttcatttcactaataatatcaaagactatatttataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="72662" stop="74600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72962" g_stop="73030" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73031" i_stop="73343" i_length="313">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73344" g_stop="73793" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="519" r_length="450" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73883" g_stop="74298" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="935" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="942" polyA_stop="962"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-U317291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>935</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72962" e_stop="73030"/>
          <exon e_start="73344" e_stop="73793"/>
          <exon e_start="73883" e_stop="74298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTGCAAGTCAGCCTGTTAGCGTTGCTATTGAAGCTGGTGGCAAAGACTTCCAGCACTATAAATCGGTAAATAATCTTTACTTCAGACTGGCCTAGTCGTTAATAAAGATGTCTTTTGATTGAATTAGGTAGTGTTCTTGTTTCAATCAATAATCTAATTACGTACCTAACCAACACGATTTTTTGTATTGAATTTACATCGTATGATCATATTCTCATGCCTCAGAGGTAGATTTAGATGGACATGATCAATTGTTCCGTAATATTTTAGGCACAAAACATTTAAGTGAAAAGCACAAATATTTCCATAATTTCAAAAGAAGGGTTAAGAATGTTATATACATGTTAAATTTAAATCTTGAACTCGTCTATGCTCCAGGGCATCTTTACTGGGAAGTGTGGCGCAGCAGTGGACCATGGTGTGGTTGCAGTGGGATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCATTTCACTAATAATATCAAAGACT</genome_strand>
        <mrna_strand>GCTATTGCAAGTCAGCCTGTTAGCGTTGCTATTGAAGCTGGTGGCAAAGACTTCCAGCACTATAAATCG.........................................................................................................................................................................................................................................................................................................................GGCATCTTTACTGGGAAGTGTGGCGCAGCAGTGGACCATGGTGTGGTTGCAGTGGGATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCATTTCACTAATAATATCAAAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341554" ref_strand="-" ref_description="SGN-U341554        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>acgagacggataatcaaatggatgccaaaaaccagataattgggtcgaaaagagttcatgagtttccgttcaagtctatcaactttggctataatagcccacaaactatggctagtctacctttgtggtcgatgcctatagcagcaccgtcttgttatgctaatgcagcacatgagatgagttctttacatgacagagttacgaggaacactacaagcaaggatgtcaaggttgtcgatgaattaggccatttgaagtttgagacagatgaggaaaatgatcaattttccttaaaccagaacttaggcctggaaaataaggtagttgaggttggttttagacaattaggaaacggaggggctgctccaaatccaaattaattgcagtttagtgtaagtaacaaactgcaaagagtctaattacatagggatcttttagtggttgttaattagctttaacttgttgataaggtactgagttatatgtttatatggtaatgacatagtaatctttagcaatttgttctgttcatattatttattggatatacactttctaagaaatgtgaacatattgtttgaaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="79280" stop="78095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78980" g_stop="78400" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="582" polyA_stop="599"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-U341554" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341554" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78980" e_stop="78400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGACGGATAATCAAATGGATGACAAAAACCAGATAATTGGGTCGAAAAGAGTTCATGAGTTTCCGTTCAAGTCTATCAACTTTGGCTATAATAGCCCACAAACTATGGCTAGTCTACCTTTGTGGTCGATGCCTATAGCAGCACCGTCTTGTTATGCTAATGCAGCACATGAGATGAGTTCTTTACATGACAGAGTTACGAGGAACACTACAAGCAAGGATGTCAAGGTTGTCGATGAATTAGGCCATTTGAAGTTTGAGACAGATGAGGAAAATGATCAATTTTCCTTAAACCAGAACTTAGGCCTGGAAAATAAGGTAGTTGAGGTTGGTTTTAGACAATTAGGAAACGGAGGGGCTGCTCCAAATCCAAATTAATTGCAGTTTAGTGTAAGTAACAAACTGCAAAGAGTCTAATTACATAGGGATCTTTTAGTGGTTGTTAATTAGCTTTAACTTGTTGATAAGGTACTGAGTTATATGTTTATATGGTAATGACATAGTAATCTTTAGCAATTTGTTCTGTTCATATTATTTATTGGATATACACTTTCTAAGAAATGTGAACATATTGTTTGG</genome_strand>
        <mrna_strand>ACGAGACGGATAATCAAATGGATGCCAAAAACCAGATAATTGGGTCGAAAAGAGTTCATGAGTTTCCGTTCAAGTCTATCAACTTTGGCTATAATAGCCCACAAACTATGGCTAGTCTACCTTTGTGGTCGATGCCTATAGCAGCACCGTCTTGTTATGCTAATGCAGCACATGAGATGAGTTCTTTACATGACAGAGTTACGAGGAACACTACAAGCAAGGATGTCAAGGTTGTCGATGAATTAGGCCATTTGAAGTTTGAGACAGATGAGGAAAATGATCAATTTTCCTTAAACCAGAACTTAGGCCTGGAAAATAAGGTAGTTGAGGTTGGTTTTAGACAATTAGGAAACGGAGGGGCTGCTCCAAATCCAAATTAATTGCAGTTTAGTGTAAGTAACAAACTGCAAAGAGTCTAATTACATAGGGATCTTTTAGTGGTTGTTAATTAGCTTTAACTTGTTGATAAGGTACTGAGTTATATGTTTATATGGTAATGACATAGTAATCTTTAGCAATTTGTTCTGTTCATATTATTTATTGGATATACACTTTCTAAGAAATGTGAACATATTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324172" ref_strand="+" ref_description="SGN-U324172        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:22142849-22145455 FORWARD | Aliases: T2K10.11, T2K10_11(evalue: 2e-61, score=232) genbank/nr: hypothetical(evalue: 2e-82, score=308)">
      <seq>taaaaggcaataaagatcatctctttcctctcatcaacttttgtgatttgaagtagaacactctgcacctttttgtttctctagaacaaaaaaaaaaaaaaagagagaaaatggaaggtggactccccatgctaaattgtctgttacaacatacacttagaagtgtctgtacttgctctgactcttcttctaatgcttctgagtgggtctatgctgttttctggagaattgtcccaagaaattatcctccacctaaatgggatcatggaggaggcttgcttgatcgcgctaaagggaacaagagaaactggattcttgtttgggaagatggtttttgtgacttttatgaatgtgaaagatcgaaaagggaacatgtaacgataaattttggtcctgaaatcttcttcaaaatgtctcatgaggtttattcttttggtgaaggattggtgggcaaagttgcagcagataatagtcacagatgggtgtctaaagatgccccaaatgaaaaagattcaaactttacttgctcatggaatatgtctattgaagctcaaccaagagcctggggagttcagtttaattcaggcattcagactattgctattatatctgttagggaaggcataattcagcttggctcatttaacaaggcatttgaagatcataatctagtattaaacattcagaggaaattcagctaccttcagagcataccgggtatttatgcaattcagagaccatttttgccnnatccacatccatatacttacaagccaaacaatgtcactctagttaacgagacggataatcaaatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="80788" stop="78657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80488" g_stop="80233" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80232" i_stop="80156" i_length="77">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80155" g_stop="80102" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="310" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80101" i_stop="79965" i_length="137">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79964" g_stop="79833" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="442" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79832" i_stop="79745" i_length="88">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79744" g_stop="79636" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="551" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79635" i_stop="79432" i_length="204">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79431" g_stop="79390" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="593" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79389" i_stop="79297" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79296" g_stop="79240" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="650" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79239" i_stop="79126" i_length="114">
            <donor d_prob="0.721" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79125" g_stop="78957" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="819" r_length="169" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-U324172" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80488" e_stop="80233"/>
          <exon e_start="80155" e_stop="80102"/>
          <exon e_start="79964" e_stop="79833"/>
          <exon e_start="79744" e_stop="79636"/>
          <exon e_start="79431" e_stop="79390"/>
          <exon e_start="79296" e_stop="79240"/>
          <exon e_start="79125" e_stop="78957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGGCAATAAAGATCATCTCTTTCCTCTCATCAACTTTTGTGATTTGAAGTAGAACACTCTGCACCTTTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAAGTAAGCACATTTTAATAATCAAAATTTGGACATTACTAAGAATAGTGTTAGTAAATTGTTCTTGATTTTTGTTGCAGATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTGGTAATGATATTAATACTAGGAGTATTTGTTTTTGTAAATTGGAGTTACGGGACAGTCAACCAACTGAGCTACTAAGGTTCATCTGAACTAGTAGTATTTGTGATTTTTATTAATAATTTGAGTTGATTTTATTTCAGGATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATGAGGTTTATTCTTTTGGTGAAGGGTGAGATATTTCATTTTCTGGTTTGATAAGTAGAATGAGCTAAAATTACATTACGTACAAGTATTAAACTTTGTAATAAAATTTTCAGATTGGTGGGCAAAGTTGCAGCAGATAATAGTCACAGATGGGTGTCTAAAGATGCCCCAAATGAAAAAGATTCAAACTTTACTTGCTCATGGAATATGTCTATTGAAGCTGTAAGCACCACTAGTCCTCATTTCCTCCTCACTCAAGATTTGAACTTTTTAGATTATCAGCTCAAAATTTAGTATTTATTTCGCGTTATATATATCTATGTCCCTATCAAAAATATTGAGTTCAGTTGAACCGGCTCGACTCTCTCTCTCGCCCTCCTTTTACAATTCTTACAAGTGTTGTGTTTGCGTTTTTTTTTTTGCCAGCAACCAAGAGCCTGGGGAGTTCAGTTTAATTCAGGCATTCAGGTAATGAAAGTTTAGCTGATGAGAAAAATATTATCACTCTTTATGTCATTTTTCAAAGATTTTAATTTAGGAAAGTTTCTGTTTTTTTGGCAGACTATTGCTATTATATCTGTTAGGGAAGGCATAATTCAGCTTGGCTCATTTAACAAGGTGTTTCTCGTCTCGTATCTATTGCTACTTGACGCGATTTCCTCCTTCTTAACGCTACTTAATCCTACGCCATTCATGTGTTTTCACTGATAACTTGTTCATGACTACTTGTAGGCATTTGAAGATCATAATCTAGTATTAAACATTCAGAGGAAATTCAGCTACCTTCAGAGCATACCGGGTATTTATGCAATTCAGAGACCATTTTTGCCAATCCAACATCCATATACTTACAAGCCAAACAATGTCACTCTAGTTAACGAGACGGATAATCAAATGGATG</genome_strand>
        <mrna_strand>TAAAAGGCAATAAAGATCATCTCTTTCCTCTCATCAACTTTTGTGATTTGAAGTAGAACACTCTGCACCTTTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAA.............................................................................ATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTG.........................................................................................................................................GATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATGAGGTTTATTCTTTTGGTGAAGG........................................................................................ATTGGTGGGCAAAGTTGCAGCAGATAATAGTCACAGATGGGTGTCTAAAGATGCCCCAAATGAAAAAGATTCAAACTTTACTTGCTCATGGAATATGTCTATTGAAGCT............................................................................................................................................................................................................CAACCAAGAGCCTGGGGAGTTCAGTTTAATTCAGGCATTCAG.............................................................................................ACTATTGCTATTATATCTGTTAGGGAAGGCATAATTCAGCTTGGCTCATTTAACAAG..................................................................................................................GCATTTGAAGATCATAATCTAGTATTAAACATTCAGAGGAAATTCAGCTACCTTCAGAGCATACCGGGTATTTATGCAATTCAGAGACCATTTTTGCCNNATCCACATCCATATACTTACAAGCCAAACAATGTCACTCTAGTTAACGAGACGGATAATCAAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316054" ref_strand="+" ref_description="SGN-U316054        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: | Symbol: None | RER1A protein, identical to SP:O48670 RER1A protein (AtRER1A) {Arabidopsis thaliana} | chr4:18263611-18265765 FORWARD | Aliases: T22F8.120, T22F8_120(evalue: 3e-63, score=238) genbank/nr: gi|50508264|dbj|BAD32075.1| putative AtRer1A [Oryza sativa (japonica cultivar-group)] >gi|50508077|dbj|BAD32077.1| putative AtRer1A [Oryza sativa (japonica cultivar-group)] (evalue: 2e-63, score=246)">
      <seq>ctttctcagataccataaattcctaattcctttcaagaaaaaaaaaaaaaaaagtaaaaaagtaaaaataaaaaataaaaaataaaaaatggacgtcggtggcggagcagttgccggcgacggtgcctcttctacttcctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgctttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaaccttgaggcatcaaagtggaatgagctttttatggtggggaatgaatttgtttttgatacaaattcgcctagatggctgtatttttcaccggataggtttctgagcttgggttatgtcattgaatatatgattatcaatgagttcttagattataaaacttagttctcctagaagctgccacacatcttgattctttcgtttatctgtaagctagcctctggatgtcaatattgagctcattcttgaaccgcgctcttattcaattcaaccttagtagtttctaacaggttgcacatccctgttgaagttcttgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="86050" stop="81777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85750" g_stop="85316" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="625" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82067" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="1002" r_length="377" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-U316054" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>992</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85750" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCAGATACCATAAATTCCTAATTCCTTTCAAG--AAAAAAAAAAAAAAGTAAAAAAGTAAAAAT-----A-AAAAAA-AAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGG-TTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTCATTCTTGAACCGCGCTCTTATTCAATTCAACCTTAGTAGTTTCTAACAGGTTGCACATCCCTGTTGAAGTTCTTGTATAATTGTCAATTA</genome_strand>
        <mrna_strand>CTTTCTCAGATACCATAAATTCCTAATTCCTTTCAAGAAAAAAAAAAAAAAAAGTAAAAAAGTAAAAATAAAAAATAAAAAATAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCCTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGCATCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTCATTCTTGAACCGCGCTCTTATTCAATTCAACCTTAGTAGTTTCTAACAGGTTGCACATCCCTGTTGAAGTTCTTGTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316053" ref_strand="+" ref_description="SGN-U316053        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | RER1A protein, identical to SP:O48670 RER1A protein (AtRER1A) {Arabidopsis thaliana} | chr4:18263611-18265765 FORWARD | Aliases: T22F8.120, T22F8_120(evalue: 3e-26, score=115) genbank/nr: gi|50508264|dbj|BAD32075.1| putative AtRer1A [Oryza sativa (japonica cultivar-group)] >gi|50508077|dbj|BAD32077.1| putative AtRer1A [Oryza sativa (japonica cultivar-group)] (evalue: 2e-26, score=122)">
      <seq>atgttcagattgtctggaaaaagaaaagtaaacttggggaccagcttctgaccagtcatgctgatcaccaagtctatttggtttccacccagtagttctttgtctctcccagtaatggttcctgatccgatgttgtaatagttttagtagccgggatgaatatgaattgttgaccttgagcttctgtgatatgcttcagccagtgcaagggcagagcagacttcttctagaccttcctcctttacacacacttagttatctgaattttgttatttcgcaatatctttgcgtgctttattattttaaactgatgcttggtgtccaggccagcttgagcatacctcaagtattccactatgtacctgatgcagtgttgctttccacttgcacatgtactaggtaatcttgcctaccaaagctaaggtggatggtatttgaactctaatctccaaggtttgcacctgcttcattaaccactagcccacacccttgggtgcgttgcgctccgaggattcccattgaagtcgatcacttaatcatatagcagaactttttcattgtgcgcttcatttatttgcctgtacttccgttagtcgtaggcatcatccagatttgttggcaatattatcttcttgaattagtagtttggcataattttcttttccttggcaggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaaccttgaggttcaaagtggaatgagctttttatggtggggaatgaatttgtttttgatacaaattcgcctagatggctgtatttttcaccggataggtttttgagcttgggttatgtcattgaatatatgattatcaatgagttcttagattataaaacttagttctcctagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="83712" stop="81922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83412" g_stop="82560" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="853" r_length="853" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82442" g_stop="82222" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="854" r_stop="1074" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-U316053" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1074</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83412" e_stop="82560"/>
          <exon e_start="82442" e_stop="82222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAA</genome_strand>
        <mrna_strand>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTTTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342290" ref_strand="+" ref_description="SGN-U342290        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tcatatatgacaggataataaattaatagtatcacaattagctgttttgtactgcctacataactttgatagatagaaaaatcctacttacaaaaaaaggaaatagatggataggaaacgcacgtattattactgataagaattcatgtgtcgatagcaccgagcatgaagcaatgacatacggcttggttagatctgtttactgaattggctgtataaataatgtcatttgttttattcatcgactgtacttgtttctgtaccatttattttttaaaataaaatcctcgtgttgcctaccatatttttattttcaagatatttttaaatttaatgatcgaatgagctctcttttcttgcaatatgtctcttaactggagttgaatataactcatgtaactagtataaatgcttcttattagcttgagtgattttaatggggaagttctgtgattatatggagtagcttaggtgattttatttggaagctctcagttacatgggacaacttatcttaatcagctaataattatagatagtattccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="84631" stop="83484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84331" g_stop="83785" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-U342290" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84331" e_stop="83785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAA</genome_strand>
        <mrna_strand>TCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328289" ref_strand="+" ref_description="SGN-U328289        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>caagatgtggattgctttaaaaagtcagatttatatttttgggtttctgaatactatgttctaaattaagaattcgcatttcacataagcatttgtacattccacagcatagttattttttgaatctgctgagaagtgttgagttgatgagtttagttatgttgttgtatattcatggttatggaagtttatgctccactgaaaaaaacttctgatctgtttgctaattgctacctattccggtcttcacatgatgatctaggatctgataaagaatagaagattcggagtggatagaaggaaaactactttcttaaactattttgtagtatgacccttagccaagcttaagatacaatgcttggcggaattagcttgaaaccattttgggcatcaaatttacattttattttttgttttgacctggtatttctggacttttttcagtggtgcctttgaccttccactctactagtatgcaatattggttgaatcgttcagcatttgaacctactaactccaacaatccagatttttatcgtatgactaaagaggatgctctaacattagtttctccatcgtgcagcatgctatgcgtgagattgagatagatagcttgggatgtctgatttctttaaattcaatcagtgcaaattattggaagagtctctcaaagctcaaaagcatgaaaatatgttgcatcccttgtaaaaaaagggtggaaatatgatgcatcctaattctgccctaaaactcttttcctaatttgaattatcgatctcatatatgacaggataataaattaatagtatcacaattagctgttttgtactgcctacataactttgatagatagaaaaatcctacttacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85411" stop="83937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85111" g_stop="84237" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-U328289" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85111" e_stop="84237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAA</genome_strand>
        <mrna_strand>CAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATCGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339279" ref_strand="+" ref_description="SGN-U339279        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gcttaagatacaatgcttggcggaattagcttgaaaccattttgggcatcaaatttacattttattttttgttttgacctggtatttctggacttttttcagcggtgcctttgaccttccactctactagtatgcaatattggttgaatcgttcagcatttgaacctactaactccaacaatccagatttttatcgtatgactaaagaggatgctctaacattagtttctccatcgtgcagcatgctatgcgtgagattgagatagatagcttgggatgtctgatttctttaaattctttctttgcaaattattggaacagtctctcggaggggagagagcatgaaaatatgttgcatcccttgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85066" stop="84100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84766" g_stop="84400" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-U339279" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84766" e_stop="84400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCA-AAAGCATGAAAATATGTTGCATCCCTTGTAAA</genome_strand>
        <mrna_strand>GCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGCGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCTTTCTTTGCAAATTATTGGAACAGTCTCTCGGAGGGGAGAGAGCATGAAAATATGTTGCATCCCTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335455" ref_strand="+" ref_description="SGN-U335455        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | RER1A protein, identical to SP:O48670 RER1A protein (AtRER1A) {Arabidopsis thaliana} | chr4:18263611-18265765 FORWARD | Aliases: T22F8.120, T22F8_120(evalue: 6e-39, score=158) genbank/nr: gi|50508264|dbj|BAD32075.1| putative AtRer1A [Oryza sativa (japonica cultivar-group)] >gi|50508077|dbj|BAD32077.1| putative AtRer1A [Oryza sativa (japonica cultivar-group)] (evalue: 3e-39, score=166)">
      <seq>agcgaaattcctaattcctttcaagaaaaaaaaaaaaaagtaaaaaagtaaaaataaaaaataaaaaatggacgtcggggggcggagcaattgccggcaacggggcttcttctacttcctcccccgggtctcaggggaccttccccttatcacagcgatatcaaaccctttgggataaatcgacacctcaaatcctttatcgggggatcttcttcgctacaatcgcttccatctttgctattcgcgggttcatggttcacggtttctacatcatcaaatatgttttaggaatctacataacccccccccttattgttttcctttcccctcaagccaacccaaaagttgacggccctacccttcccactcgcggatccaataagtttcgccctttcgttcgcccccttcctgaatttaaattttggaactcacaatcaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="86034" stop="84999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85739" g_stop="85316" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-U335455" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85739" e_stop="85316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATAAATTCCTAATTCCTTTCAAGAAAAAAAAAAAAAAGTAAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGG-CGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG</genome_strand>
        <mrna_strand>AGC-GAAATTCCTAATTCCTTTCAAGAAAAAAAAAAAAAAGTAAAAAAGTAAAAATAAAAAATAAAAAATGGACGTCGGGGGGCGGAGCAATTGCCGGCAACGGGGCTTCTTCTACTTCCTCCCCCGGGTCTCAGGGGACCTTCCCCTTATCACAGCGATATCAAACCCTTTGGGATAAATCGACACCTCAAATCCTTTATCGGGGGATCTTCTTCGCTACAATCGCTTCCATCTTTGCTATTCGCGGGTTCATGGTTCACGGTTTCTACATCATCAAATATGTTTTAGGAATCTACATAACCCCCCCCCTTATTGTTTTCCTTTCCCCTCAAGCCAACCCAAAAGTTGACGGCCCTACCCTTCCCACTCGCGGATCCAATAAGTTTCGCCCTTTCGTTCGCCCCCTTCCTGAATTTAAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323410" ref_strand="+" ref_description="SGN-U323410        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: VFB1 | F-box family protein, ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr1:17278543-17280099 REVERSE | Aliases: F2G19.16, F2G19_16, VFB1, VIER F-BOX PROTEINE 1(evalue: 2e-179, score=626) genbank/nr: Cyclin-like(evalue: 0, score=688)">
      <seq>agaattaaatccgaactaattttattttcaggtccgctatcaaactcacctgtaaattgcaacttcatccgaaaaagacgaacgcaaaagggctggtgaaatagtaagtggatatagtgaccttgacctatctttgttattctagtggtggatgggtcagtcagcttccaccgtcgccggagctcaaaaccgtataaagtctagatcttcgccggtgatttcttctatgaaggaaattgatgattccgacgatgttatcgatgtattcgatgtaggagagtttgattattcttctaatattcctgatgagtgtttagcttgcattttccatttccttagctcaggtgaccggaaaagttcttctctcgtctgccgccgttggctccgtgtggaaggccagagccgtcaccgtctctcgcttaatgcacaatcggaacttgtggctgttgttcctgtgattttctctaggtttgattcggtaacgaaactcgctttgaaatgtgaccgtagatctgcgagtattggggatgaggcgttggtgcttatctctttaaggtgccggaacctaactcgtttgaagcttcggtcgtgccgggagcttactgatgctggaatggaatcttttgcgaagaactgtaagggtttgaagaaactatcttgtggatcttgtgcttttggagctaaagggatgaacgccgtgttgaataactgctcggctctggaagagttgtccgtgaagcggctgcgtggtatcacagatggggctgcagctgagccaattggtcctggtgttgcagggggttctctgagagttatttgccttaaggaactctacaatggacagtgttttggaccgttgattattggatcgaagagtttgcggacgctgaagctgttccgttgttctggagattgggataagattctggaagtgattgctgaacaagtcagtgaacttgttgaaattcatcttgagaggcttcaggtcagtgataccggtcttgctgctatatctaaatgttccattcttgaaattctgcaccttgtgaaaacgcctgaatgcactaataatggtctaaagactgttgctgaaaactgtaagcttctaagaaagcttcacattgatgggtggaagactaacaggataagtgatgatgggttaattgctgtggcgaaacattgccccaatttacaagaattggttttaataggtgtgaatccaacttgtgctagtttggagaagttggctacgaattgcttgaatttagagagattagctctgtgtggaagtgaaactgttggggatccagaactgtcgtgcatagctgcgaaatgtattgcattaagaaaactttgtataaagagttgcccagtatccgatcagggtatggaagcgcttgctagtggatgcccaaatttggtaaaagtaaaggttaagaaatgtagattggtgacttctggaagtgcagattggttgcggacaactaggggttccattgctgtgaacttggatacacctgaacctgaaaatcctgatgcaagtgccagtgatggtggtttgcctgaagttggcaatgaaattaggcaggtggctggccaagtaagaggtgtaagtattgcatcaagcagtactgggaggtcaaattcctttaaggccaggctaggacttacaacaggaaggaatctggtggcttgcacattcagaaggtggtcgagctttggtgggagttcgagttccagttccagaaataattagaaaaaaggagttgactgagatcaatcttatgctcaaatattctgctattgaagttatttgacttttattacatttatatattcttgaatttgcatgctagttaatgcaacaacagattcagccttcatggttggaccttgttcgtgagttttccttctttttgtttttgcttatgttgatgctatttttgggcttggtatgctccttcaacgtggagttcttcatttctcctgggagaggactcaacattctatcttctgaaaaagaaaggaaggaaaaggttataatccaagaagttggtgattttggaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="92501" stop="89833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92201" g_stop="90124" g_length="2078"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2078" r_length="2078" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-U323410" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>2078</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92201" e_stop="90124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTAAATCCGAACTAATTTTATTTTCAGGTCCGCTATCAAACTCACCTGTAAATTGCAACTTCATCCGAAAAAGACGAACGCAAAAGGGCTGGTGAAATAGTAAGTGGATATAGTGACCTTGACCTATCTTTGTTATTCTAGTGGTGGATGGGTCAGTCAGCTTCCACCGTCGCCGGAGCTCAAAACCGTATAAAGTCTAGATCTTCGCCGGTGATTTCTTCTATGAAGGAAATTGATGATTCCGACGATGTTATCGATGTATTCGATGTAGGAGAGTTTGATTATTCTTCTAATATTCCTGATGAGTGTTTAGCTTGCATTTTCCATTTCCTTAGCTCAGGTGACCGGAAAAGTTCTTCTCTCGTCTGCCGCCGTTGGCTCCGTGTGGAAGGCCAGAGCCGTCACCGTCTCTCGCTTAATGCACAATCGGAACTTGTGGCTGTTGTTCCTGTGATTTTCTCTAGGTTTGATTCGGTAACGAAACTCGCTTTGAAATGTGACCGTAGATCTGCGAGTATTGGGGATGAGGCGTTGGTGCTTATCTCTTTAAGGTGCCGGAACCTAACTCGTTTGAAGCTTCGGTCGTGCCGGGAGCTTACTGATGCTGGAATGGAATCTTTTGCGAAGAACTGTAAGGGTTTGAAGAAACTATCTTGTGGATCTTGTGCTTTTGGAGCTAAAGGGATGAACGCCGTGTTGAATAACTGCTCGGCTCTGGAAGAGTTGTCCGTGAAGCGGCTGCGTGGTATCACAGATGGGGCTGCAGCTGAGCCAATTGGTCCTGGTGTTGCAGGGGGTTCTCTGAGAGTTATTTGCCTTAAGGAACTCTACAATGGACAGTGTTTTGGACCGTTGATTATTGGATCGAAGAGTTTGCGGACGCTGAAGCTGTTCCGTTGTTCTGGAGATTGGGATAAGATTCTGGAAGTGATTGCTGAACAAGTCAGTGAACTTGTTGAAATTCATCTTGAGAGGCTTCAGGTCAGTGATACCGGTCTTGCTGCTATATCTAAATGTTCCATTCTTGAAATTCTGCACCTTGTGAAAACGCCTGAATGCACTAATAATGGTCTAAAGGCTGTTGCTGAAAACTGTAAGCTTCTAAGAAAGCTTCACATTGATGGGTGGAAGACTAACAGGATAAGTGATGATGGGTTAATTGCTGTGGCAAAACATTGCCCCAATTTACAAGAATTGGTTTTAATAGGTGTGAATCCAACATGTGCTAGTTTGGAGAAGTTGGCTACAAATTGCTTGAATTTAGAGAGATTAGCTCTGTGTGGAAGTGAAACTGTTGGGGATCCAGAACTGTCGTGCATAGCTGCGAAATGTATTGCATTAAGAAAACTTTGTATAAAGAGTTGCCCAGTATCCGATCAGGGTATGGAAGCGCTTGCTAGTGGATGCCCAAATTTGGTAAAAGTAAAGGTTAAGAAATGTAGATTGGTGACTTCTGGAAGTGCAGATTGGTTGCGGACAACTAGGGGCTCCGTTGCTGTGAACTTGGATACACCTGAACCTGAAAATCCTGATGCAAGTGCCAGTGATGGTGGTTTGCCTGAAGTTGGCAATGAAATTAGGCAGGTGGCTGGCCAAGTAAGAGGTGTAAGTATTGCATCAAGCAGTACTGGGAGGTCAAATTCCTTTAAGGCCAGGCTAGGACTTGCAACAGGAAGGAATCTGGTGGCTTGCACATTCAGAAGGTGGTCGAGCTTTGGTGGGAGTTCGAGTTCCAGTTCCAGAAATAATTAGAAAAAAGGAGTTGACTGAGATCAATCTTATGCTCAAATATTCTGCTATTGAAGTTATTTGACTTTTATTACATTTATATATTCTTGAATTTGCATGCTAGTTAATGCAACAACAGATTCAGCCTTCATGGTTGGACCTTGTTCGTGAGTTTTCCTTCTTTTTGTTTTTGCTTATGTTGATGCTATTTTTGGGCTTGGTATGCTCCTTCAACGTGGAGTTCTTCATTTCTCCTGGGAGAGGACTCAACATTCTATCTTCTGAAAAAGAAAGGAAGGAAAAGGTTATAATCCAAGAAGTTGGTGATTTTGGACTACGTGTTTTA</genome_strand>
        <mrna_strand>AGAATTAAATCCGAACTAATTTTATTTTCAGGTCCGCTATCAAACTCACCTGTAAATTGCAACTTCATCCGAAAAAGACGAACGCAAAAGGGCTGGTGAAATAGTAAGTGGATATAGTGACCTTGACCTATCTTTGTTATTCTAGTGGTGGATGGGTCAGTCAGCTTCCACCGTCGCCGGAGCTCAAAACCGTATAAAGTCTAGATCTTCGCCGGTGATTTCTTCTATGAAGGAAATTGATGATTCCGACGATGTTATCGATGTATTCGATGTAGGAGAGTTTGATTATTCTTCTAATATTCCTGATGAGTGTTTAGCTTGCATTTTCCATTTCCTTAGCTCAGGTGACCGGAAAAGTTCTTCTCTCGTCTGCCGCCGTTGGCTCCGTGTGGAAGGCCAGAGCCGTCACCGTCTCTCGCTTAATGCACAATCGGAACTTGTGGCTGTTGTTCCTGTGATTTTCTCTAGGTTTGATTCGGTAACGAAACTCGCTTTGAAATGTGACCGTAGATCTGCGAGTATTGGGGATGAGGCGTTGGTGCTTATCTCTTTAAGGTGCCGGAACCTAACTCGTTTGAAGCTTCGGTCGTGCCGGGAGCTTACTGATGCTGGAATGGAATCTTTTGCGAAGAACTGTAAGGGTTTGAAGAAACTATCTTGTGGATCTTGTGCTTTTGGAGCTAAAGGGATGAACGCCGTGTTGAATAACTGCTCGGCTCTGGAAGAGTTGTCCGTGAAGCGGCTGCGTGGTATCACAGATGGGGCTGCAGCTGAGCCAATTGGTCCTGGTGTTGCAGGGGGTTCTCTGAGAGTTATTTGCCTTAAGGAACTCTACAATGGACAGTGTTTTGGACCGTTGATTATTGGATCGAAGAGTTTGCGGACGCTGAAGCTGTTCCGTTGTTCTGGAGATTGGGATAAGATTCTGGAAGTGATTGCTGAACAAGTCAGTGAACTTGTTGAAATTCATCTTGAGAGGCTTCAGGTCAGTGATACCGGTCTTGCTGCTATATCTAAATGTTCCATTCTTGAAATTCTGCACCTTGTGAAAACGCCTGAATGCACTAATAATGGTCTAAAGACTGTTGCTGAAAACTGTAAGCTTCTAAGAAAGCTTCACATTGATGGGTGGAAGACTAACAGGATAAGTGATGATGGGTTAATTGCTGTGGCGAAACATTGCCCCAATTTACAAGAATTGGTTTTAATAGGTGTGAATCCAACTTGTGCTAGTTTGGAGAAGTTGGCTACGAATTGCTTGAATTTAGAGAGATTAGCTCTGTGTGGAAGTGAAACTGTTGGGGATCCAGAACTGTCGTGCATAGCTGCGAAATGTATTGCATTAAGAAAACTTTGTATAAAGAGTTGCCCAGTATCCGATCAGGGTATGGAAGCGCTTGCTAGTGGATGCCCAAATTTGGTAAAAGTAAAGGTTAAGAAATGTAGATTGGTGACTTCTGGAAGTGCAGATTGGTTGCGGACAACTAGGGGTTCCATTGCTGTGAACTTGGATACACCTGAACCTGAAAATCCTGATGCAAGTGCCAGTGATGGTGGTTTGCCTGAAGTTGGCAATGAAATTAGGCAGGTGGCTGGCCAAGTAAGAGGTGTAAGTATTGCATCAAGCAGTACTGGGAGGTCAAATTCCTTTAAGGCCAGGCTAGGACTTACAACAGGAAGGAATCTGGTGGCTTGCACATTCAGAAGGTGGTCGAGCTTTGGTGGGAGTTCGAGTTCCAGTTCCAGAAATAATTAGAAAAAAGGAGTTGACTGAGATCAATCTTATGCTCAAATATTCTGCTATTGAAGTTATTTGACTTTTATTACATTTATATATTCTTGAATTTGCATGCTAGTTAATGCAACAACAGATTCAGCCTTCATGGTTGGACCTTGTTCGTGAGTTTTCCTTCTTTTTGTTTTTGCTTATGTTGATGCTATTTTTGGGCTTGGTATGCTCCTTCAACGTGGAGTTCTTCATTTCTCCTGGGAGAGGACTCAACATTCTATCTTCTGAAAAAGAAAGGAAGGAAAAGGTTATAATCCAAGAAGTTGGTGATTTTGGAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2003" PGL_stop="2711"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2003" e_stop="2711"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="2003" e_stop="2711" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2003" stop="2711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATGAAATTGGTGTTTGAATCACAAAGAGGAGAGTGGGGAAAAGCAGAAAGAGTGATTGGTTGTGGTTACAATCCAAGCCAAAAGAAGGTATTTTTCACAGTGGATTCATTGTTAGTACATGAAATTTTTTGCAAAACAGAAGAATTTGGAAATCCACTTTACCCAATTTTAGCATCAAATGGTGATATTTTAGTACTAGTAAATCTTGGACAAAGTGTATTCAAATATCAACCAGCAAATCTACATAGGACACCAAATCCTTGCTTCATTGGTCCAATAATGCAAAATGATTCATCAATTCTTGGATATGAAGACAGCAAAGAACTTTTCTCAATGGGTAGAATTGATGCACAATGGCTTAATAGAAGTAATACAAGAAGTAATAACAATACTGTTAATAGTTTAAAACAAGTATTAGATTATGATTTGGAGTCTGAAGGTGATTTATTTGAAATTGTTTTAGATAATTGTAATAGTTATTCAAGATCTCCTAACCCTTTGTAACATATTATAAAAAGAATAATTCAAATGTAACATTATAATTTTGTACATGTTTTTTTTTTTTTGGGGTTGTATGAGACCATGAAGGGGCACTAAATTAGAAGATATTGGTTTTATTTTATTTGTTAATTTGTTAGTTGTTGTAACTGTTAAGTCACTAAATTAAAGATGATGTTGATTATAATTGTATTGTAATTTGATTAATG</gDNA_template>
            <first_frame> E  *  N  W  C  L  N  H  K  E  E  S  G  E  K  Q  K  E  *  L  V  V  V  T  I  Q  A  K  R  R  Y  F  S  Q  W  I  H  C  *  Y  M  K  F  F  A  K  Q  K  N  L  E  I  H  F  T  Q  F  *  H  Q  M  V  I  F  *  Y  *  *  I  L  D  K  V  Y  S  N  I  N  Q  Q  I  Y  I  G  H  Q  I  L  A  S  L  V  Q  *  C  K  M  I  H  Q  F  L  D  M  K  T  A  K  N  F  S  Q  W  V  E  L  M  H  N  G  L  I  E  V  I  Q  E  V  I  T  I  L  L  I  V  *  N  K  Y  *  I  M  I  W  S  L  K  V  I  Y  L  K  L  F  *  I  I  V  I  V  I  Q  D  L  L  T  L  C  N  I  L  *  K  E  *  F  K  C  N  I  I  I  L  Y  M  F  F  F  F  W  G  C  M  R  P  *  R  G  T  K  L  E  D  I  G  F  I  L  F  V  N  L  L  V  V  V  T  V  K  S  L  N  *  R  *  C  *  L  *  L  Y  C  N  L  I  N  </first_frame>
            <second_frame>  N  E  I  G  V  *  I  T  K  R  R  V  G  K  S  R  K  S  D  W  L  W  L  Q  S  K  P  K  E  G  I  F  H  S  G  F  I  V  S  T  *  N  F  L  Q  N  R  R  I  W  K  S  T  L  P  N  F  S  I  K  W  *  Y  F  S  T  S  K  S  W  T  K  C  I  Q  I  S  T  S  K  S  T  *  D  T  K  S  L  L  H  W  S  N  N  A  K  *  F  I  N  S  W  I  *  R  Q  Q  R  T  F  L  N  G  *  N  *  C  T  M  A  *  *  K  *  Y  K  K  *  *  Q  Y  C  *  *  F  K  T  S  I  R  L  *  F  G  V  *  R  *  F  I  *  N  C  F  R  *  L  *  *  L  F  K  I  S  *  P  F  V  T  Y  Y  K  K  N  N  S  N  V  T  L  *  F  C  T  C  F  F  F  F  G  V  V  *  D  H  E  G  A  L  N  *  K  I  L  V  L  F  Y  L  L  I  C  *  L  L  *  L  L  S  H  *  I  K  D  D  V  D  Y  N  C  I  V  I  *  L  M </second_frame>
            <third_frame>   M  K  L  V  F  E  S  Q  R  G  E  W  G  K  A  E  R  V  I  G  C  G  Y  N  P  S  Q  K  K  V  F  F  T  V  D  S  L  L  V  H  E  I  F  C  K  T  E  E  F  G  N  P  L  Y  P  I  L  A  S  N  G  D  I  L  V  L  V  N  L  G  Q  S  V  F  K  Y  Q  P  A  N  L  H  R  T  P  N  P  C  F  I  G  P  I  M  Q  N  D  S  S  I  L  G  Y  E  D  S  K  E  L  F  S  M  G  R  I  D  A  Q  W  L  N  R  S  N  T  R  S  N  N  N  T  V  N  S  L  K  Q  V  L  D  Y  D  L  E  S  E  G  D  L  F  E  I  V  L  D  N  C  N  S  Y  S  R  S  P  N  P  L  *  H  I  I  K  R  I  I  Q  M  *  H  Y  N  F  V  H  V  F  F  F  L  G  L  Y  E  T  M  K  G  H  *  I  R  R  Y  W  F  Y  F  I  C  *  F  V  S  C  C  N  C  *  V  T  K  L  K  M  M  L  I  I  I  V  L  *  F  D  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2005" stop="2508"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKLVFESQRGEWGKAERVIGCGYNPSQKKVFFTVDSLLVHEIFCKTEEFGNPLYPILASNGDILVLVNLGQSVFKYQPANLHRTPNPCFIGPIMQNDSSILGYEDSKELFSMGRIDAQWLNRSNTRSNNNTVNSLKQVLDYDLESEGDLFEIVLDNCNSYSRSPNPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="29579" PGL_stop="31182"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29579" e_stop="29637"/>
            <exon e_start="30139" e_stop="30232"/>
            <exon e_start="30402" e_stop="30433"/>
            <exon e_start="30524" e_stop="30621"/>
            <exon e_start="30724" e_stop="30822"/>
            <exon e_start="30970" e_stop="31182"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="0.969"/>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29579" e_stop="29637" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.995">
            <gDNA_intron_boundary i_start="29638" i_stop="30138" i_length="501"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="30139" e_stop="30232" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30233" i_stop="30401" i_length="169"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="30402" e_stop="30433" e_length="32"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="30434" i_stop="30523" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30524" e_stop="30621" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="30622" i_stop="30723" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30724" e_stop="30822" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30823" i_stop="30969" i_length="147"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="30970" e_stop="31182" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29579" stop="29637"/>
              <exon start="30139" stop="30232"/>
              <exon start="30402" stop="30433"/>
              <exon start="30524" stop="30621"/>
              <exon start="30724" stop="30822"/>
              <exon start="30970" stop="31182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGAAGGAATGAGTATGAGAGACATAAATTGCTAGCTTTAAATCAACGACAAAAGATG : GTTCTTCAAAGAAAGACGGAGGAGGCTGCTATGGCAACCAAGAGACTAAAAGAATTGCTAGAAGCGCGTAAATCTTCTGGTCGCGAGAACTCAG : TTACTAGCAACGGCCATGTAGCAAATGGACAG : AGCAATGAGAAATCGTTGCAACGTTGGCTTGATCATGAGCTTGAAGTGATGGTGAATGTTCATGAAGTTCGTCATGAGTATGAGAAGCAAAGTCAAGT : ACGAGCCGCACTTGGTGAAGAGCTAGCAGTTTTGAAACAAGTTGATGAATTTGCTTCAAAAGGACTGAGTCCTCCAAGGGGTAAAAATGGCTTCTCTAG : GGCATCTTCAATGTCGCCAAATGCTAGAATGGCACGAATTGCTTCTCTAGAGAATATGTTAGGCATTTCATCCAATTCTCTAGTTGCAATGGCTTCACAACTTTCAGAAGCAGAAGAACGAGAGCGAGCTTTTAGCAATCGTGGGCGTTGGAACCAACTACGCTCGATGGGGGATGCAAAAAGTTTGCTCCAATATATGTTCAATTCTCTTGC</gDNA_template>
            <first_frame> E  E  G  M  S  M  R  D  I  N  C  *  L  *  I  N  D  K  R  W :   F  F  K  E  R  R  R  R  L  L  W  Q  P  R  D  *  K  N  C  *  K  R  V  N  L  L  V  A  R  T  Q  :  L  L  A  T  A  M  *  Q  M  D  R :   A  M  R  N  R  C  N  V  G  L  I  M  S  L  K  *  W  *  M  F  M  K  F  V  M  S  M  R  S  K  V  K   : Y  E  P  H  L  V  K  S  *  Q  F  *  N  K  L  M  N  L  L  Q  K  D  *  V  L  Q  G  V  K  M  A  S  L   : G  H  L  Q  C  R  Q  M  L  E  W  H  E  L  L  L  *  R  I  C  *  A  F  H  P  I  L  *  L  Q  W  L  H  N  F  Q  K  Q  K  N  E  S  E  L  L  A  I  V  G  V  G  T  N  Y  A  R  W  G  M  Q  K  V  C  S  N  I  C  S  I  L  L  </first_frame>
            <second_frame>  K  K  E  *  V  *  E  T  *  I  A  S  F  K  S  T  T  K  D   : G  S  S  K  K  D  G  G  G  C  Y  G  N  Q  E  T  K  R  I  A  R  S  A  *  I  F  W  S  R  E  L  S :   Y  *  Q  R  P  C  S  K  W  T   : E  Q  *  E  I  V  A  T  L  A  *  S  *  A  *  S  D  G  E  C  S  *  S  S  S  *  V  *  E  A  K  S  S  :  T  S  R  T  W  *  R  A  S  S  F  E  T  S  *  *  I  C  F  K  R  T  E  S  S  K  G  *  K  W  L  L  *  :  G  I  F  N  V  A  K  C  *  N  G  T  N  C  F  S  R  E  Y  V  R  H  F  I  Q  F  S  S  C  N  G  F  T  T  F  R  S  R  R  T  R  A  S  F  *  Q  S  W  A  L  E  P  T  T  L  D  G  G  C  K  K  F  A  P  I  Y  V  Q  F  S  C </second_frame>
            <third_frame>   R  R  N  E  Y  E  R  H  K  L  L  A  L  N  Q  R  Q  K  M  :  V  L  Q  R  K  T  E  E  A  A  M  A  T  K  R  L  K  E  L  L  E  A  R  K  S  S  G  R  E  N  S   : V  T  S  N  G  H  V  A  N  G  Q  :  S  N  E  K  S  L  Q  R  W  L  D  H  E  L  E  V  M  V  N  V  H  E  V  R  H  E  Y  E  K  Q  S  Q  V :   R  A  A  L  G  E  E  L  A  V  L  K  Q  V  D  E  F  A  S  K  G  L  S  P  P  R  G  K  N  G  F  S  R :   A  S  S  M  S  P  N  A  R  M  A  R  I  A  S  L  E  N  M  L  G  I  S  S  N  S  L  V  A  M  A  S  Q  L  S  E  A  E  E  R  E  R  A  F  S  N  R  G  R  W  N  Q  L  R  S  M  G  D  A  K  S  L  L  Q  Y  M  F  N  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29581" stop="29637"/>
                    <exon start="30139" stop="30232"/>
                    <exon start="30402" stop="30433"/>
                    <exon start="30524" stop="30621"/>
                    <exon start="30724" stop="30822"/>
                    <exon start="30970" stop="31180"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNEYERHKLLALNQRQKMVLQRKTEEAAMATKRLKELLEARKSSGRENSVTSNGHVANGQSNEKSLQRWLDHELEVMVNVHEVRHEYEKQSQVRAALGEELAVLKQVDEFASKGLSPPRGKNGFSRASSMSPNARMARIASLENMLGISSNSLVAMASQLSEAEERERAFSNRGRWNQLRSMGDAKSLLQYMFNSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="37618" PGL_stop="33452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37618" e_stop="37222"/>
            <exon e_start="34271" e_stop="33643"/>
            <exon e_start="33460" e_stop="33452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.680" e_score="0.998"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="37618" e_stop="37222" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="34271" e_stop="33643" e_length="629"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.680">
            <gDNA_intron_boundary i_start="33642" i_stop="33461" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="33460" e_stop="33452" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37618" stop="37222"/>
              <exon start="34271" stop="33643"/>
              <exon start="33460" stop="33452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAATTGAATGTTGAGGGTGGGAAGGGGCAAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG : GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGTGGTGGTCTGGTTAGCACCCATCGCAAAGATGAACACTACTCATTCTGGTGTTGCAAAAATTGAGTTAGCTTTCAACTTGAATGTATTTTAGCCAGTGGGTTTCTCTAGTATTTGCTCTTGGCTCCAGATCAATGCTCTAACTAGGCATGTTGCTGTAAGCATTACATGGTAGCTGGAGTAATGATTGCACAGGTCGCACTGAAAGTTGTATGGCTATAGATATTGACAACAAAAATGTATTCAGTTTCTTGGAGTATGTTGTGCACTCTGTACTATTCAAGATGTTTTGAAATAATTGAAGCATATATCCTTATAGTGAGCTTGTA : GTAAACAAA</gDNA_template>
            <first_frame> K  K  L  N  V  E  G  G  K  G  Q  I  F  Q  K  L  L  E  I  S  G  G  L  F  A  I  S  L  L  S  S  S  L  C  K  N  S  N  Q  I  L  T  L  E  *  N  K  S  K  K  *  E  N  S  G  D  E  S  N  R  S  Q  L  *  R  K  C  H  G  R  C  R  C  *  H  D  G  G  G  V  H  G  V  S  G  S  T  G  T  A  T  A  T  V  T  V  T  V  T  I  A  F  K  F  R  P  G  W  R  H  *  R  D  A  H  C  G  S  S  A  Y  R  S  R  Q  A  F  S  S  S  S  S   : G  G  D  G  H  E  N  Q  R  W  *  A  G  R  N  S  S  P  *  S  C  P  G  A  V  Q  K  *  S  T  G  K  C  G  C  R  *  A  G  F  F  V  C  *  V  C  H  C  *  G  H  P  Y  Y  I  P  T  F  *  T  *  Y  S  G  *  T  N  *  S  R  R  *  W  N  F  N  T  I  *  N  W  Q  E  T  D  N  V  *  C  I  L  *  R  K  Q  L  C  L  P  T  M  W  W  S  G  *  H  P  S  Q  R  *  T  L  L  I  L  V  L  Q  K  L  S  *  L  S  T  *  M  Y  F  S  Q  W  V  S  L  V  F  A  L  G  S  R  S  M  L  *  L  G  M  L  L  *  A  L  H  G  S  W  S  N  D  C  T  G  R  T  E  S  C  M  A  I  D  I  D  N  K  N  V  F  S  F  L  E  Y  V  V  H  S  V  L  F  K  M  F  *  N  N  *  S  I  Y  P  Y  S  E  L  V  :  V  N  K </first_frame>
            <second_frame>  K  N  *  M  L  R  V  G  R  G  K  Y  S  R  N  C  *  K  Y  L  V  V  S  S  P  F  L  Y  Y  L  H  L  S  V  K  T  P  I  K  Y  *  P  L  S  R  T  R  V  R  N  R  K  T  P  A  T  K  V  T  D  R  N  C  N  G  N  A  M  D  D  V  D  A  D  M  M  E  A  E  S  T  V  S  V  D  P  P  V  P  P  L  P  P  S  P  S  P  S  L  L  H  S  S  S  D  Q  D  G  A  I  R  G  M  L  T  V  A  R  Q  L  I  D  Q  G  R  P  S  Q  A  L  Q  A  :  V  V  T  A  M  R  T  R  G  G  E  Q  A  V  I  Q  A  L  N  R  A  Q  E  L  Y  R  N  K  V  Q  A  S  V  A  A  D  E  L  A  S  L  F  A  E  C  A  I  A  E  A  I  P  T  I  S  Q  P  S  E  H  N  T  V  D  K  P  I  E  V  D  A  D  G  T  S  I  L  S  E  T  G  R  K  Q  I  M  F  D  A  F  S  D  G  S  S  F  V  C  L  Q  C  G  G  L  V  S  T  H  R  K  D  E  H  Y  S  F  W  C  C  K  N  *  V  S  F  Q  L  E  C  I  L  A  S  G  F  L  *  Y  L  L  L  A  P  D  Q  C  S  N  *  A  C  C  C  K  H  Y  M  V  A  G  V  M  I  A  Q  V  A  L  K  V  V  W  L  *  I  L  T  T  K  M  Y  S  V  S  W  S  M  L  C  T  L  Y  Y  S  R  C  F  E  I  I  E  A  Y  I  L  I  V  S  L  * :   *  T   </second_frame>
            <third_frame>   K  I  E  C  *  G  W  E  G  A  N  I  P  E  T  A  R  N  I  W  W  S  L  R  H  F  S  I  I  F  I  S  L  *  K  L  Q  S  N  T  N  P  *  V  E  Q  E  *  E  I  G  K  L  R  R  R  K  *  Q  I  A  T  V  T  E  M  P  W  T  M  *  M  L  T  *  W  R  R  S  P  R  C  Q  W  I  H  R  Y  R  H  C  H  R  H  R  H  R  H  Y  C  I  Q  V  Q  T  R  M  A  P  L  E  G  C  S  L  W  L  V  S  L  S  I  K  A  G  L  L  K  L  F  K  R :   W  *  R  P  *  E  P  E  V  V  S  R  P  *  F  K  P  L  I  V  P  R  S  C  T  E  I  K  Y  R  Q  V  W  L  Q  M  S  W  L  L  C  L  L  S  V  P  L  L  R  P  S  L  L  Y  P  N  L  L  N  I  I  Q  W  I  N  Q  L  K  *  T  L  M  E  L  Q  Y  Y  L  K  L  A  G  N  R  *  C  L  M  H  S  L  T  E  A  A  L  F  A  Y  N  V  V  V  W  L  A  P  I  A  K  M  N  T  T  H  S  G  V  A  K  I  E  L  A  F  N  L  N  V  F  *  P  V  G  F  S  S  I  C  S  W  L  Q  I  N  A  L  T  R  H  V  A  V  S  I  T  W  *  L  E  *  *  L  H  R  S  H  *  K  L  Y  G  Y  R  Y  *  Q  Q  K  C  I  Q  F  L  G  V  C  C  A  L  C  T  I  Q  D  V  L  K  *  L  K  H  I  S  L  *  *  A  C   : S  K  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37494" stop="37222"/>
                    <exon start="34271" stop="33906"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLSRTRVRNRKTPATKVTDRNCNGNAMDDVDADMMEAESTVSVDPPVPPLPPSPSPSLLHSSSDQDGAIRGMLTVARQLIDQGRPSQALQAVVTAMRTRGGEQAVIQALNRAQELYRNKVQASVAADELASLFAECAIAEAIPTISQPSEHNTVDKPIEVDADGTSILSETGRKQIMFDAFSDGSSFVCLQCGGLVSTHRKDEHYSFWCCKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="41152" PGL_stop="39858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41152" e_stop="40733"/>
            <exon e_start="40244" e_stop="39858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.109" e_score="0.983"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="41152" e_stop="40733" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.109">
            <gDNA_intron_boundary i_start="40732" i_stop="40245" i_length="488"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="40244" e_stop="39858" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41152" stop="40733"/>
              <exon start="40244" stop="39858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAGCAGTATTGAGGATTGAAGAAGATAACAATGAACTGGAAGAGAAGGTGAAAAGAGTACAACAAGGAATGCAGCAAGTGATGGGTAAAAGTGGGAGCTTAGTATTCTGTGCAGGTGAGGTGCAGGTGTATACCCTGGAACAGCTGATGAGAGCTTCTGCTGAGCTTTTAGGTAGAGGAACTATGGGGACTACTTACAAAGCAGTGCTTGATAACCGTCTGATTGTGTGTGTGAAGAGATTGGACGGTGGGAGATTGGCCGGTACAAGTCAAGAAGAGTTTGAGCAGCATATGGAATCAGTAGGCGGGCTTAGGCACCCGAATTTGGTTCCTTTTCGGGCTTATTTTCAGGCCCGACAAGAAAGGCTTTTGGTCTATGATTATCAACCCAATGGCAGCCTGTTTTCTCTTATTCATG : GTTCCAAGTCATCAAGAGCAAAGCCACTTCACTGGACTTCATGTTTGAAAATAGCAGAGGATGTAGCTCAAGGACTTTCCTACATCCACCAAGCATGGAGGCTTGTCCATGGCAATCTCAAGTCCTCTAACGTCCTCCTCGGCTCCGATTTCGAGGCGTGCATAACCGACTACTGTCTCTCCGTCCTAGCTGTCCCCTCGGACGATGAGAATCCTGATTCTGTAGCCTATCAGGCTCCAGAAATTCGTAAGCTGAATCACAACAACCACAACTACCACCGCCAAGCTAGTGCCAAGGCTGATGTCTATTCGTTTGGGGTTCTTTTGCTTGAACTTCTAACGGGGAAGCATCCTTCGGAACATCCATATCTAATGCCAGATGATATGA</gDNA_template>
            <first_frame> Q  K  Q  Y  *  G  L  K  K  I  T  M  N  W  K  R  R  *  K  E  Y  N  K  E  C  S  K  *  W  V  K  V  G  A  *  Y  S  V  Q  V  R  C  R  C  I  P  W  N  S  *  *  E  L  L  L  S  F  *  V  E  E  L  W  G  L  L  T  K  Q  C  L  I  T  V  *  L  C  V  *  R  D  W  T  V  G  D  W  P  V  Q  V  K  K  S  L  S  S  I  W  N  Q  *  A  G  L  G  T  R  I  W  F  L  F  G  L  I  F  R  P  D  K  K  G  F  W  S  M  I  I  N  P  M  A  A  C  F  L  L  F  M  :  V  P  S  H  Q  E  Q  S  H  F  T  G  L  H  V  *  K  *  Q  R  M  *  L  K  D  F  P  T  S  T  K  H  G  G  L  S  M  A  I  S  S  P  L  T  S  S  S  A  P  I  S  R  R  A  *  P  T  T  V  S  P  S  *  L  S  P  R  T  M  R  I  L  I  L  *  P  I  R  L  Q  K  F  V  S  *  I  T  T  T  T  T  T  T  A  K  L  V  P  R  L  M  S  I  R  L  G  F  F  C  L  N  F  *  R  G  S  I  L  R  N  I  H  I  *  C  Q  M  I  * </first_frame>
            <second_frame>  R  S  S  I  E  D  *  R  R  *  Q  *  T  G  R  E  G  E  K  S  T  T  R  N  A  A  S  D  G  *  K  W  E  L  S  I  L  C  R  *  G  A  G  V  Y  P  G  T  A  D  E  S  F  C  *  A  F  R  *  R  N  Y  G  D  Y  L  Q  S  S  A  *  *  P  S  D  C  V  C  E  E  I  G  R  W  E  I  G  R  Y  K  S  R  R  V  *  A  A  Y  G  I  S  R  R  A  *  A  P  E  F  G  S  F  S  G  L  F  S  G  P  T  R  K  A  F  G  L  *  L  S  T  Q  W  Q  P  V  F  S  Y  S  W :   F  Q  V  I  K  S  K  A  T  S  L  D  F  M  F  E  N  S  R  G  C  S  S  R  T  F  L  H  P  P  S  M  E  A  C  P  W  Q  S  Q  V  L  *  R  P  P  R  L  R  F  R  G  V  H  N  R  L  L  S  L  R  P  S  C  P  L  G  R  *  E  S  *  F  C  S  L  S  G  S  R  N  S  *  A  E  S  Q  Q  P  Q  L  P  P  P  S  *  C  Q  G  *  C  L  F  V  W  G  S  F  A  *  T  S  N  G  E  A  S  F  G  T  S  I  S  N  A  R  *  Y   </second_frame>
            <third_frame>   E  A  V  L  R  I  E  E  D  N  N  E  L  E  E  K  V  K  R  V  Q  Q  G  M  Q  Q  V  M  G  K  S  G  S  L  V  F  C  A  G  E  V  Q  V  Y  T  L  E  Q  L  M  R  A  S  A  E  L  L  G  R  G  T  M  G  T  T  Y  K  A  V  L  D  N  R  L  I  V  C  V  K  R  L  D  G  G  R  L  A  G  T  S  Q  E  E  F  E  Q  H  M  E  S  V  G  G  L  R  H  P  N  L  V  P  F  R  A  Y  F  Q  A  R  Q  E  R  L  L  V  Y  D  Y  Q  P  N  G  S  L  F  S  L  I  H   : G  S  K  S  S  R  A  K  P  L  H  W  T  S  C  L  K  I  A  E  D  V  A  Q  G  L  S  Y  I  H  Q  A  W  R  L  V  H  G  N  L  K  S  S  N  V  L  L  G  S  D  F  E  A  C  I  T  D  Y  C  L  S  V  L  A  V  P  S  D  D  E  N  P  D  S  V  A  Y  Q  A  P  E  I  R  K  L  N  H  N  N  H  N  Y  H  R  Q  A  S  A  K  A  D  V  Y  S  F  G  V  L  L  L  E  L  L  T  G  K  H  P  S  E  H  P  Y  L  M  P  D  D  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41150" stop="40733"/>
                    <exon start="40244" stop="39859"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAVLRIEEDNNELEEKVKRVQQGMQQVMGKSGSLVFCAGEVQVYTLEQLMRASAELLGRGTMGTTYKAVLDNRLIVCVKRLDGGRLAGTSQEEFEQHMESVGGLRHPNLVPFRAYFQARQERLLVYDYQPNGSLFSLIHGSKSSRAKPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSSNVLLGSDFEACITDYCLSVLAVPSDDENPDSVAYQAPEIRKLNHNNHNYHRQASAKADVYSFGVLLLELLTGKHPSEHPYLMPDDM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="57967" PGL_stop="56852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57967" e_stop="57063"/>
            <exon e_start="56956" e_stop="56852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.924" e_score="0.979"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="57967" e_stop="57063" e_length="905"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.924">
            <gDNA_intron_boundary i_start="57062" i_stop="56957" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56956" e_stop="56852" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57967" stop="57063"/>
              <exon start="56956" stop="56852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATTAGAATAAGAATTTCCTCCCATTTTTCTCTCTCATTTTTATTTCTATATCTTCATTAGCTTCTACCCCTCTCTTCACTCTTTACAATTTCCTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGGGTTTCAAATAACAAATCTTTCTCAGGTTTCATCCGCCGGCCGTCCACCTCTTTCTACTTCTTCATTCAAAAGGAAGTGTAGTTCCATGGACGATACCGCCCTCAAGTGCAGCAGCGCCGGTGGTTCCTCTGGCCGTTGCCACTGCCCAAAGAAAAG : AAAATCAAGAGTCAAAAGAGTAGTAAGAGTCCCTGCTATTAGCATGAAAATGGCTGATATTCCACCTGATGATTATTCATGGAGAAAATATGGTCAAAAACCCAT</gDNA_template>
            <first_frame> L  I  R  I  R  I  S  S  H  F  S  L  S  F  L  F  L  Y  L  H  *  L  L  P  L  S  S  L  F  T  I  S  F  F  F  F  F  F  S  L  F  Y  G  I  V  N  M  A  V  D  L  M  T  S  G  Y  R  T  D  N  F  S  S  K  M  E  E  T  A  V  Q  E  A  A  T  A  G  L  Q  S  V  E  K  L  I  R  L  L  S  K  S  H  Q  N  Q  Q  Q  Q  Q  T  N  F  Q  D  S  S  S  G  N  S  S  V  S  A  D  Y  Q  A  V  A  D  A  A  V  N  K  F  K  K  F  I  S  L  L  D  K  N  R  T  G  H  A  R  F  R  R  G  P  I  S  S  L  S  P  P  L  P  S  K  P  Q  Q  L  Q  Q  S  I  K  N  Q  N  P  Q  I  E  E  I  E  K  P  Q  A  S  N  T  K  I  Y  C  P  T  P  I  Q  R  L  P  P  L  P  H  N  H  L  Q  L  V  K  N  G  S  I  E  R  K  E  A  S  T  T  I  N  F  A  S  P  S  P  A  T  S  F  M  S  S  L  T  G  E  T  E  S  L  Q  Q  S  L  S  S  G  F  Q  I  T  N  L  S  Q  V  S  S  A  G  R  P  P  L  S  T  S  S  F  K  R  K  C  S  S  M  D  D  T  A  L  K  C  S  S  A  G  G  S  S  G  R  C  H  C  P  K  K  R :   K  S  R  V  K  R  V  V  R  V  P  A  I  S  M  K  M  A  D  I  P  P  D  D  Y  S  W  R  K  Y  G  Q  K  P   </first_frame>
            <second_frame>  *  L  E  *  E  F  P  P  I  F  L  S  H  F  Y  F  Y  I  F  I  S  F  Y  P  S  L  H  S  L  Q  F  P  S  S  S  S  S  S  L  C  S  M  V  L  *  T  W  L  *  T  *  *  P  V  V  T  E  P  I  I  F  H  Q  K  W  R  K  P  P  Y  K  K  L  Q  P  P  D  F  K  A  L  R  N  *  S  D  C  C  L  N  L  I  K  I  N  N  N  N  K  R  I  F  R  I  R  H  R  V  I  P  L  F  L  Q  I  I  K  L  *  L  M  L  L  *  T  N  S  K  S  S  F  L  Y  L  I  K  T  E  L  V  M  L  D  S  G  E  D  Q  L  V  L  F  L  L  H  F  H  Q  S  H  N  N  Y  N  N  P  L  R  I  K  T  P  K  L  K  K  S  K  N  P  K  L  Q  I  P  K  S  T  V  R  P  Q  F  K  D  C  L  L  Y  L  I  T  I  F  N  *  *  K  M  G  R  L  K  G  K  K  H  Q  L  P  L  I  L  L  L  H  R  R  R  L  R  L  C  H  R  *  Q  G  K  Q  R  A  Y  S  S  L  Y  L  L  G  F  K  *  Q  I  F  L  R  F  H  P  P  A  V  H  L  F  L  L  L  H  S  K  G  S  V  V  P  W  T  I  P  P  S  S  A  A  A  P  V  V  P  L  A  V  A  T  A  Q  R  K   : E  N  Q  E  S  K  E  *  *  E  S  L  L  L  A  *  K  W  L  I  F  H  L  M  I  I  H  G  E  N  M  V  K  N  P  </second_frame>
            <third_frame>   D  *  N  K  N  F  L  P  F  F  S  L  I  F  I  S  I  S  S  L  A  S  T  P  L  F  T  L  Y  N  F  L  L  L  L  L  L  L  S  V  L  W  Y  C  K  H  G  C  R  L  N  D  Q  W  L  Q  N  R  *  F  F  I  K  N  G  G  N  R  R  T  R  S  C  N  R  R  T  S  K  R  *  E  I  N  Q  I  V  V  *  I  S  S  K  S  T  T  T  T  N  E  F  S  G  F  V  I  G  *  F  L  C  F  C  R  L  S  S  C  S  *  C  C  C  K  Q  I  Q  K  V  H  F  F  T  *  *  K  Q  N  W  S  C  *  I  P  A  R  T  N  *  F  S  F  S  S  T  S  I  K  A  T  T  I  T  T  I  H  *  E  S  K  P  P  N  *  R  N  R  K  T  P  S  F  K  Y  Q  N  L  L  S  D  P  N  S  K  I  A  S  F  T  S  *  P  S  S  I  S  E  K  W  V  D  *  K  E  R  S  I  N  Y  H  *  F  C  F  S  I  A  G  D  F  V  Y  V  I  V  N  R  G  N  R  E  L  T  A  V  F  I  F  W  V  S  N  N  K  S  F  S  G  F  I  R  R  P  S  T  S  F  Y  F  F  I  Q  K  E  V  *  F  H  G  R  Y  R  P  Q  V  Q  Q  R  R  W  F  L  W  P  L  P  L  P  K  E  K  :  K  I  K  S  Q  K  S  S  K  S  P  C  Y  *  H  E  N  G  *  Y  S  T  *  *  L  F  M  E  K  I  W  S  K  T  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57904" stop="57063"/>
                    <exon start="56956" stop="56854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLPLSSLFTISFFFFFFSLFYGIVNMAVDLMTSGYRTDNFSSKMEETAVQEAATAGLQSVEKLIRLLSKSHQNQQQQQTNFQDSSSGNSSVSADYQAVADAAVNKFKKFISLLDKNRTGHARFRRGPISSLSPPLPSKPQQLQQSIKNQNPQIEEIEKPQASNTKIYCPTPIQRLPPLPHNHLQLVKNGSIERKEASTTINFASPSPATSFMSSLTGETESLQQSLSSGFQITNLSQVSSAGRPPLSTSSFKRKCSSMDDTALKCSSAGGSSGRCHCPKKRKSRVKRVVRVPAISMKMADIPPDDYSWRKYGQKP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="70621" PGL_stop="74298"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70621" e_stop="71110"/>
            <exon e_start="72557" e_stop="72792"/>
            <exon e_start="72890" e_stop="73030"/>
            <exon e_start="73344" e_stop="73793"/>
            <exon e_start="73883" e_stop="74298"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.879" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.972"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70621" e_stop="71110" e_length="490"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.977">
            <gDNA_intron_boundary i_start="71111" i_stop="72556" i_length="1446"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72557" e_stop="72792" e_length="236"/>
          </exon>
          <intron i_serial="2" don_prob="0.879" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72793" i_stop="72889" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="72890" e_stop="73030" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73031" i_stop="73343" i_length="313"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73344" e_stop="73793" e_length="450"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73883" e_stop="74298" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70621" stop="71110"/>
              <exon start="72557" stop="72792"/>
              <exon start="72890" stop="72995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72962" stop="73030"/>
              <exon start="73344" stop="73793"/>
              <exon start="73883" stop="74298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGATTCATCTCTCCGCTCTAACAATCTCGATCCTCGTAATGGTCGTGTCCTCCGCCGCCGTAACATCGGCGGCGGCAGAGGACATGTCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTG : GGAGTTGCTGGGCTTTCTCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGAGCTAGTAGATTGTGATACTTCTTCTAACAATGGTTGTGACGGTGGTCTCATGGACTATGCTTTTGAATTCGTTATCAAAAATGGAGGACTAGACACTGAGGAAGATTACCCATATACTGGCGAGGATGGAAGATGTGACCTAACAAGG : AAAAATGCCAAGGTTGTCACCATTGACGGGTATGAAGATGTTCCTGCTAATGATGAAAACGCAATGAAAAAGGCTATTGCAAGTCAGCCTGTTAGCGTTGCTATTGAAGCTGGTGGCAAAGACTTCCAGCACTATAAATCG : GGCATCTTTACTGGGAAGTGTGGCGCAGCAGTGGACCATGGTGTGGTTGCAGTGGGATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC : AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCATTTCACTAATAATATCAAAGACT</gDNA_template>
            <first_frame> A  I  H  L  S  A  L  T  I  S  I  L  V  M  V  V  S  S  A  A  V  T  S  A  A  A  E  D  M  S  I  I  S  Y  N  E  K  H  H  T  I  G  A  G  R  T  D  D  E  V  M  S  M  Y  E  S  W  L  V  E  H  K  K  V  Y  N  A  L  G  E  K  D  K  R  F  Q  I  F  K  D  N  L  K  Y  I  D  E  H  N  A  M  P  E  K  S  Y  K  L  G  L  T  K  F  A  D  L  T  N  E  E  Y  R  S  V  Y  L  G  T  K  P  D  A  S  R  R  L  S  S  R  Q  S  D  R  Y  A  P  K  V  G  D  R  L  P  E  S  V  D  W  V  K  K  G  V  L  V  G  V  K  D  Q  G  Q  C   : G  S  C  W  A  F  S  A  V  A  A  I  E  A  V  N  K  I  K  T  G  D  S  I  S  L  S  E  Q  E  L  V  D  C  D  T  S  S  N  N  G  C  D  G  G  L  M  D  Y  A  F  E  F  V  I  K  N  G  G  L  D  T  E  E  D  Y  P  Y  T  G  E  D  G  R  C  D  L  T  R  :  K  N  A  K  V  V  T  I  D  G  Y  E  D  V  P  A  N  D  E  N  A  M  K  K  A  I  A  S  Q  P  V  S  V  A  I  E  A  G  G  K  D  F  Q  H  Y  K  S  :  G  I  F  T  G  K  C  G  A  A  V  D  H  G  V  V  A  V  G  Y  G  S  E  N  G  M  D  Y  W  I  V  R  N  S  W  G  A  S  W  G  E  H  G  Y  L  R  M  Q  R  N  I  A  N  P  K  G  L  C  G  I  A  T  V  V  S  Y  P  V  K  T  G  Q  N  P  P  K  P  A  P  S  P  P  S  P  V  K  P  P  T  T  C  D  D  M  Y  S  C  P  S  G  T  T  C  C  C  V  Y  E  Y  Y  H  M  C  F  A  W  G  C  C  P  M  E  G  A  T  C  C  K  D  H  N  S  C  C  P  H  D  Y  P  V  C  N  V  K  A  G  T  C  S  I  :  S  E  N  N  P  L  S  V  K  A  M  S  H  I  L  A  K  P  I  G  S  F  S  N  Q  G  M  K  N  T  I  S  *  S  V  S  N  G  N  A  Q  I  R  S  E  F  A  K  P  H  F  Q  L  K  V  Y  S  Y  R  *  F  Q  K  Q  R  I  T  E  L  L  L  I  S  V  *  C  F  F  S  A  C  H  T  M  H  *  N  N  I  E  T  R  F  H  C  S  A  V  S  D  L  C  K  Y  F  L  Y  F  F  I  R  D  D  Y  L  L  L  S  Q  C  S  L  L  F  H  V  M  L  L  L  S  F  H  *  *  Y  Q  R   </first_frame>
            <second_frame>  R  F  I  S  P  L  *  Q  S  R  S  S  *  W  S  C  P  P  P  P  *  H  R  R  R  Q  R  T  C  R  L  *  A  T  T  K  N  I  T  R  S  A  P  V  G  P  M  T  R  S  C  L  C  T  N  R  G  *  L  N  T  K  K  C  T  T  L  W  E  K  K  I  N  G  S  R  S  L  R  T  T  L  N  T  S  M  N  I  T  L  C  R  R  K  V  I  S  S  V  *  L  S  L  L  I  *  P  T  R  S  I  G  R  F  I  W  V  R  S  R  M  L  V  A  G  C  R  V  D  K  V  I  G  M  L  R  R  S  E  I  G  C  R  N  L  L  I  G  *  R  K  V  C  L  L  V  L  R  I  K  D  N  V  :  G  V  A  G  L  S  Q  Q  L  L  P  L  K  Q  *  T  K  *  R  L  E  T  R  S  L  Y  P  S  R  S  *  *  I  V  I  L  L  L  T  M  V  V  T  V  V  S  W  T  M  L  L  N  S  L  S  K  M  E  D  *  T  L  R  K  I  T  H  I  L  A  R  M  E  D  V  T  *  Q  G :   K  M  P  R  L  S  P  L  T  G  M  K  M  F  L  L  M  M  K  T  Q  *  K  R  L  L  Q  V  S  L  L  A  L  L  L  K  L  V  A  K  T  S  S  T  I  N  R :   A  S  L  L  G  S  V  A  Q  Q  W  T  M  V  W  L  Q  W  D  M  V  A  K  M  A  W  I  I  G  L  *  G  T  H  G  V  L  P  G  E  N  T  A  T  S  G  C  S  V  T  L  L  T  Q  R  V  C  V  V  L  L  Q  L  F  L  T  L  S  R  Q  A  K  I  P  R  N  Q  L  H  L  L  H  R  Q  S  S  H  L  L  L  V  M  I  C  T  V  A  H  Q  E  Q  R  V  A  V  S  T  S  T  I  T  C  A  L  L  G  V  A  A  L  W  K  E  L  L  A  V  K  T  I  T  V  A  A  H  M  I  I  L  S  A  M  L  K  P  A  P  A  Q  S :   A  R  I  T  L  F  Q  S  K  Q  C  H  T  F  L  P  N  L  L  D  P  S  A  I  R  E  *  K  T  L  S  L  E  V  S  P  M  G  M  R  K  F  A  V  N  L  Q  N  L  I  S  S  *  K  F  I  V  I  G  D  S  K  S  R  G  *  Q  S  C  C  *  F  L  Y  S  A  S  L  V  L  V  T  Q  C  T  R  T  I  L  K  Q  D  F  I  V  L  L  F  L  I  Y  V  N  I  S  F  I  S  S  S  G  M  T  I  C  Y  F  H  N  A  V  Y  Y  S  M  *  C  F  Y  F  H  F  T  N  N  I  K  D  </second_frame>
            <third_frame>   D  S  S  L  R  S  N  N  L  D  P  R  N  G  R  V  L  R  R  R  N  I  G  G  G  R  G  H  V  D  Y  K  L  Q  R  K  T  S  H  D  R  R  R  S  D  R  *  R  G  H  V  Y  V  R  I  V  V  S  *  T  Q  K  S  V  Q  R  F  G  R  K  R  *  T  V  P  D  L  *  G  Q  P  *  I  H  R  *  T  *  R  Y  A  G  E  K  L  *  A  R  F  D  *  V  C  *  S  D  Q  R  G  V  *  V  G  L  F  G  Y  E  A  G  C  *  S  Q  V  V  E  *  T  K  *  S  V  C  S  E  G  R  R  *  V  A  G  I  C  *  L  G  E  E  R  C  A  C  W  C  *  G  S  R  T  M  W :   E  L  L  G  F  L  S  S  C  C  H  *  S  S  K  Q  N  K  D  W  R  L  D  L  F  I  R  A  G  A  S  R  L  *  Y  F  F  *  Q  W  L  *  R  W  S  H  G  L  C  F  *  I  R  Y  Q  K  W  R  T  R  H  *  G  R  L  P  I  Y  W  R  G  W  K  M  *  P  N  K   : E  K  C  Q  G  C  H  H  *  R  V  *  R  C  S  C  *  *  *  K  R  N  E  K  G  Y  C  K  S  A  C  *  R  C  Y  *  S  W  W  Q  R  L  P  A  L  *  I   : G  H  L  Y  W  E  V  W  R  S  S  G  P  W  C  G  C  S  G  I  W  *  R  K  W  H  G  L  L  D  C  E  E  L  M  G  C  F  L  G  R  T  R  L  P  Q  D  A  A  *  H  C  *  P  K  G  F  V  W  Y  C  Y  S  C  F  L  P  C  Q  D  R  P  K  S  P  E  T  S  S  I  S  S  I  A  S  Q  A  T  Y  Y  L  *  *  Y  V  Q  L  P  I  R  N  N  V  L  L  C  L  R  V  L  S  H  V  L  C  L  G  L  L  P  Y  G  R  S  Y  L  L  *  R  P  *  Q  L  L  P  T  *  L  S  C  L  Q  C  *  S  R  H  L  L  N   : Q  R  E  *  P  S  F  S  Q  S  N  V  T  H  S  C  Q  T  Y  W  I  L  Q  Q  S  G  N  E  K  H  Y  L  L  K  C  L  Q  W  E  C  A  N  S  Q  *  I  C  K  T  S  F  P  A  E  S  L  *  L  *  V  I  P  K  A  E  D  N  R  V  A  A  D  F  C  I  V  L  L  *  C  L  S  H  N  A  L  E  Q  Y  *  N  K  I  S  L  F  C  C  F  *  F  M  *  I  F  P  L  F  L  H  Q  G  *  L  S  A  T  F  T  M  Q  F  I  I  P  C  D  A  S  T  F  I  S  L  I  I  S  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70621" stop="71110"/>
                    <exon start="72557" stop="72792"/>
                    <exon start="72890" stop="73030"/>
                    <exon start="73344" stop="73793"/>
                    <exon start="73883" stop="73981"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1413</number_coding_nucleotides>
                  <number_encoded_amino_acids>471</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIHLSALTISILVMVVSSAAVTSAAAEDMSIISYNEKHHTIGAGRTDDEVMSMYESWLVEHKKVYNALGEKDKRFQIFKDNLKYIDEHNAMPEKSYKLGLTKFADLTNEEYRSVYLGTKPDASRRLSSRQSDRYAPKVGDRLPESVDWVKKGVLVGVKDQGQCGSCWAFSAVAAIEAVNKIKTGDSISLSEQELVDCDTSSNNGCDGGLMDYAFEFVIKNGGLDTEEDYPYTGEDGRCDLTRKNAKVVTIDGYEDVPANDENAMKKAIASQPVSVAIEAGGKDFQHYKSGIFTGKCGAAVDHGVVAVGYGSENGMDYWIVRNSWGASWGEHGYLRMQRNIANPKGLCGIATVVSYPVKTGQNPPKPAPSPPSPVKPPTTCDDMYSCPSGTTCCCVYEYYHMCFAWGCCPMEGATCCKDHNSCCPHDYPVCNVKAGTCSISENNPLSVKAMSHILAKPIGSFSNQGMKNTIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="80488" PGL_stop="78400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80488" e_stop="80233"/>
            <exon e_start="80155" e_stop="80102"/>
            <exon e_start="79964" e_stop="79833"/>
            <exon e_start="79744" e_stop="79636"/>
            <exon e_start="79431" e_stop="79390"/>
            <exon e_start="79296" e_stop="79240"/>
            <exon e_start="79125" e_stop="78400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.880" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.721" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80488" e_stop="80233" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.880" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80232" i_stop="80156" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80155" e_stop="80102" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.957">
            <gDNA_intron_boundary i_start="80101" i_stop="79965" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79964" e_stop="79833" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.895" acc_prob="0.991">
            <gDNA_intron_boundary i_start="79832" i_stop="79745" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79744" e_stop="79636" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.885" acc_prob="0.987">
            <gDNA_intron_boundary i_start="79635" i_stop="79432" i_length="204"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79431" e_stop="79390" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.982">
            <gDNA_intron_boundary i_start="79389" i_stop="79297" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79296" e_stop="79240" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.721" acc_prob="0.982">
            <gDNA_intron_boundary i_start="79239" i_stop="79126" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="79125" e_stop="78400" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80488" stop="80233"/>
              <exon start="80155" stop="80102"/>
              <exon start="79964" stop="79833"/>
              <exon start="79744" stop="79636"/>
              <exon start="79431" stop="79390"/>
              <exon start="79296" stop="79240"/>
              <exon start="79125" stop="78957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78980" stop="78400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341554" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAGGCAATAAAGATCATCTCTTTCCTCTCATCAACTTTTGTGATTTGAAGTAGAACACTCTGCACCTTTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAA : ATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTG : GATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATGAGGTTTATTCTTTTGGTGAAGG : ATTGGTGGGCAAAGTTGCAGCAGATAATAGTCACAGATGGGTGTCTAAAGATGCCCCAAATGAAAAAGATTCAAACTTTACTTGCTCATGGAATATGTCTATTGAAGCT : CAACCAAGAGCCTGGGGAGTTCAGTTTAATTCAGGCATTCAG : ACTATTGCTATTATATCTGTTAGGGAAGGCATAATTCAGCTTGGCTCATTTAACAAG : GCATTTGAAGATCATAATCTAGTATTAAACATTCAGAGGAAATTCAGCTACCTTCAGAGCATACCGGGTATTTATGCAATTCAGAGACCATTTTTGCCAATCCAACATCCATATACTTACAAGCCAAACAATGTCACTCTAGTTAACGAGACGGATAATCAAATGGATGACAAAAACCAGATAATTGGGTCGAAAAGAGTTCATGAGTTTCCGTTCAAGTCTATCAACTTTGGCTATAATAGCCCACAAACTATGGCTAGTCTACCTTTGTGGTCGATGCCTATAGCAGCACCGTCTTGTTATGCTAATGCAGCACATGAGATGAGTTCTTTACATGACAGAGTTACGAGGAACACTACAAGCAAGGATGTCAAGGTTGTCGATGAATTAGGCCATTTGAAGTTTGAGACAGATGAGGAAAATGATCAATTTTCCTTAAACCAGAACTTAGGCCTGGAAAATAAGGTAGTTGAGGTTGGTTTTAGACAATTAGGAAACGGAGGGGCTGCTCCAAATCCAAATTAATTGCAGTTTAGTGTAAGTAACAAACTGCAAAGAGTCTAATTACATAGGGATCTTTTAGTGGTTGTTAATTAGCTTTAACTTGTTGATAAGGTACTGAGTTATATGTTTATATGGTAATGACATAGTAATCTTTAGCAATTTGTTCTGTTCATATTATTTATTGGATATACACTTTCTAAGAAATGTGAACATATTGTTTGG</gDNA_template>
            <first_frame> *  K  A  I  K  I  I  S  F  L  S  S  T  F  V  I  *  S  R  T  L  C  T  F  L  F  L  *  N  K  K  K  K  K  E  R  K  W  K  V  D  S  P  C  *  I  V  C  Y  N  I  H  L  E  V  S  V  L  A  L  T  L  L  L  M  L  L  S  G  S  M  L  F  S  G  E  L  S  Q  E  I  I  L  H  L   : N  G  I  M  E  E  A  C  L  I  A  L  K  G  T  R  E  T   : G  F  L  F  G  K  M  V  F  V  T  F  M  N  V  K  D  R  K  G  N  M  *  R  *  I  L  V  L  K  S  S  S  K  C  L  M  R  F  I  L  L  V  K   : D  W  W  A  K  L  Q  Q  I  I  V  T  D  G  C  L  K  M  P  Q  M  K  K  I  Q  T  L  L  A  H  G  I  C  L  L  K  L :   N  Q  E  P  G  E  F  S  L  I  Q  A  F  R :   L  L  L  L  Y  L  L  G  K  A  *  F  S  L  A  H  L  T  R :   H  L  K  I  I  I  *  Y  *  T  F  R  G  N  S  A  T  F  R  A  Y  R  V  F  M  Q  F  R  D  H  F  C  Q  S  N  I  H  I  L  T  S  Q  T  M  S  L  *  L  T  R  R  I  I  K  W  M  T  K  T  R  *  L  G  R  K  E  F  M  S  F  R  S  S  L  S  T  L  A  I  I  A  H  K  L  W  L  V  Y  L  C  G  R  C  L  *  Q  H  R  L  V  M  L  M  Q  H  M  R  *  V  L  Y  M  T  E  L  R  G  T  L  Q  A  R  M  S  R  L  S  M  N  *  A  I  *  S  L  R  Q  M  R  K  M  I  N  F  P  *  T  R  T  *  A  W  K  I  R  *  L  R  L  V  L  D  N  *  E  T  E  G  L  L  Q  I  Q  I  N  C  S  L  V  *  V  T  N  C  K  E  S  N  Y  I  G  I  F  *  W  L  L  I  S  F  N  L  L  I  R  Y  *  V  I  C  L  Y  G  N  D  I  V  I  F  S  N  L  F  C  S  Y  Y  L  L  D  I  H  F  L  R  N  V  N  I  L  F   </first_frame>
            <second_frame>  K  R  Q  *  R  S  S  L  S  S  H  Q  L  L  *  F  E  V  E  H  S  A  P  F  C  F  S  R  T  K  K  K  K  K  R  E  N  G  R  W  T  P  H  A  K  L  S  V  T  T  Y  T  *  K  C  L  Y  L  L  *  L  F  F  *  C  F  *  V  G  L  C  C  F  L  E  N  C  P  K  K  L  S  S  T  *  :  M  G  S  W  R  R  L  A  *  S  R  *  R  E  Q  E  K  L  :  D  S  C  L  G  R  W  F  L  *  L  L  *  M  *  K  I  E  K  G  T  C  N  D  K  F  W  S  *  N  L  L  Q  N  V  S  *  G  L  F  F  W  *  R  :  I  G  G  Q  S  C  S  R  *  *  S  Q  M  G  V  *  R  C  P  K  *  K  R  F  K  L  Y  L  L  M  E  Y  V  Y  *  S   : S  T  K  S  L  G  S  S  V  *  F  R  H  S   : D  Y  C  Y  Y  I  C  *  G  R  H  N  S  A  W  L  I  *  Q   : G  I  *  R  S  *  S  S  I  K  H  S  E  E  I  Q  L  P  S  E  H  T  G  Y  L  C  N  S  E  T  I  F  A  N  P  T  S  I  Y  L  Q  A  K  Q  C  H  S  S  *  R  D  G  *  S  N  G  *  Q  K  P  D  N  W  V  E  K  S  S  *  V  S  V  Q  V  Y  Q  L  W  L  *  *  P  T  N  Y  G  *  S  T  F  V  V  D  A  Y  S  S  T  V  L  L  C  *  C  S  T  *  D  E  F  F  T  *  Q  S  Y  E  E  H  Y  K  Q  G  C  Q  G  C  R  *  I  R  P  F  E  V  *  D  R  *  G  K  *  S  I  F  L  K  P  E  L  R  P  G  K  *  G  S  *  G  W  F  *  T  I  R  K  R  R  G  C  S  K  S  K  L  I  A  V  *  C  K  *  Q  T  A  K  S  L  I  T  *  G  S  F  S  G  C  *  L  A  L  T  C  *  *  G  T  E  L  Y  V  Y  M  V  M  T  *  *  S  L  A  I  C  S  V  H  I  I  Y  W  I  Y  T  F  *  E  M  *  T  Y  C  L  </second_frame>
            <third_frame>   K  G  N  K  D  H  L  F  P  L  I  N  F  C  D  L  K  *  N  T  L  H  L  F  V  S  L  E  Q  K  K  K  K  R  E  K  M  E  G  G  L  P  M  L  N  C  L  L  Q  H  T  L  R  S  V  C  T  C  S  D  S  S  S  N  A  S  E  W  V  Y  A  V  F  W  R  I  V  P  R  N  Y  P  P  P  K :   W  D  H  G  G  G  L  L  D  R  A  K  G  N  K  R  N  W :   I  L  V  W  E  D  G  F  C  D  F  Y  E  C  E  R  S  K  R  E  H  V  T  I  N  F  G  P  E  I  F  F  K  M  S  H  E  V  Y  S  F  G  E  G :   L  V  G  K  V  A  A  D  N  S  H  R  W  V  S  K  D  A  P  N  E  K  D  S  N  F  T  C  S  W  N  M  S  I  E  A  :  Q  P  R  A  W  G  V  Q  F  N  S  G  I  Q  :  T  I  A  I  I  S  V  R  E  G  I  I  Q  L  G  S  F  N  K  :  A  F  E  D  H  N  L  V  L  N  I  Q  R  K  F  S  Y  L  Q  S  I  P  G  I  Y  A  I  Q  R  P  F  L  P  I  Q  H  P  Y  T  Y  K  P  N  N  V  T  L  V  N  E  T  D  N  Q  M  D  D  K  N  Q  I  I  G  S  K  R  V  H  E  F  P  F  K  S  I  N  F  G  Y  N  S  P  Q  T  M  A  S  L  P  L  W  S  M  P  I  A  A  P  S  C  Y  A  N  A  A  H  E  M  S  S  L  H  D  R  V  T  R  N  T  T  S  K  D  V  K  V  V  D  E  L  G  H  L  K  F  E  T  D  E  E  N  D  Q  F  S  L  N  Q  N  L  G  L  E  N  K  V  V  E  V  G  F  R  Q  L  G  N  G  G  A  A  P  N  P  N  *  L  Q  F  S  V  S  N  K  L  Q  R  V  *  L  H  R  D  L  L  V  V  V  N  *  L  *  L  V  D  K  V  L  S  Y  M  F  I  W  *  *  H  S  N  L  *  Q  F  V  L  F  I  L  F  I  G  Y  T  L  S  K  K  C  E  H  I  V  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80432" stop="80233"/>
                    <exon start="80155" stop="80102"/>
                    <exon start="79964" stop="79833"/>
                    <exon start="79744" stop="79636"/>
                    <exon start="79431" stop="79390"/>
                    <exon start="79296" stop="79240"/>
                    <exon start="79125" stop="78601"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTLHLFVSLEQKKKKREKMEGGLPMLNCLLQHTLRSVCTCSDSSSNASEWVYAVFWRIVPRNYPPPKWDHGGGLLDRAKGNKRNWILVWEDGFCDFYECERSKREHVTINFGPEIFFKMSHEVYSFGEGLVGKVAADNSHRWVSKDAPNEKDSNFTCSWNMSIEAQPRAWGVQFNSGIQTIAIISVREGIIQLGSFNKAFEDHNLVLNIQRKFSYLQSIPGIYAIQRPFLPIQHPYTYKPNNVTLVNETDNQMDDKNQIIGSKRVHEFPFKSINFGYNSPQTMASLPLWSMPIAAPSCYANAAHEMSSLHDRVTRNTTSKDVKVVDELGHLKFETDEENDQFSLNQNLGLENKVVEVGFRQLGNGGAAPNPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="85750" PGL_stop="82067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85111" e_stop="83785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="85111" e_stop="83785" e_length="1327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85111" stop="84237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84766" stop="84400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84331" stop="83785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAA</gDNA_template>
            <first_frame> Q  D  V  D  C  F  K  K  S  D  L  Y  F  W  V  S  E  Y  Y  V  L  N  *  E  F  A  F  H  I  S  I  C  T  F  H  S  I  V  I  F  *  I  C  *  E  V  L  S  *  *  V  *  L  C  C  C  I  F  M  V  M  E  V  Y  A  P  L  K  K  T  S  D  L  F  A  N  C  Y  L  F  R  S  S  H  D  D  L  G  S  D  K  E  *  K  I  R  S  G  *  K  E  N  Y  F  L  K  L  F  C  S  M  T  L  S  Q  A  *  D  T  M  L  G  G  I  S  L  K  P  F  W  A  S  N  L  H  F  I  F  C  F  D  L  V  F  L  D  F  F  Q  W  C  L  *  P  S  T  L  L  V  C  N  I  G  *  I  V  Q  H  L  N  L  L  T  P  T  I  Q  I  F  I  V  *  L  K  R  M  L  *  H  *  F  L  H  R  A  A  C  Y  A  *  D  *  D  R  *  L  G  M  S  D  F  F  K  F  N  Q  C  K  L  L  E  E  S  L  K  A  Q  K  H  E  N  M  L  H  P  L  *  K  K  G  G  N  M  M  H  P  N  S  A  L  K  L  F  S  *  F  E  L  W  I  S  Y  M  T  G  *  *  I  N  S  I  T  I  S  C  F  V  L  P  T  *  L  *  *  I  E  K  S  Y  L  Q  K  K  E  I  D  G  *  E  T  H  V  L  L  L  I  R  I  H  V  S  I  A  P  S  M  K  Q  *  H  T  A  W  L  D  L  F  T  E  L  A  V  *  I  M  S  F  V  L  F  I  D  C  T  C  F  C  T  I  Y  F  L  K  *  N  P  R  V  A  Y  H  I  F  I  F  K  I  F  L  N  L  M  I  E  *  A  L  F  S  C  N  M  S  L  N  W  S  *  I  *  L  M  *  L  V  *  M  L  L  I  S  L  S  D  F  N  G  E  V  L  *  L  Y  G  V  A  *  V  I  L  F  G  S  S  Q  L  H  G  T  T  Y  L  N  Q  L  I  I  I  D  S  I  Q  </first_frame>
            <second_frame>  K  M  W  I  A  L  K  S  Q  I  Y  I  F  G  F  L  N  T  M  F  *  I  K  N  S  H  F  T  *  A  F  V  H  S  T  A  *  L  F  F  E  S  A  E  K  C  *  V  D  E  F  S  Y  V  V  V  Y  S  W  L  W  K  F  M  L  H  *  K  K  L  L  I  C  L  L  I  A  T  Y  S  G  L  H  M  M  I  *  D  L  I  K  N  R  R  F  G  V  D  R  R  K  T  T  F  L  N  Y  F  V  V  *  P  L  A  K  L  K  I  Q  C  L  A  E  L  A  *  N  H  F  G  H  Q  I  Y  I  L  F  F  V  L  T  W  Y  F  W  T  F  F  S  G  A  F  D  L  P  L  Y  *  Y  A  I  L  V  E  S  F  S  I  *  T  Y  *  L  Q  Q  S  R  F  L  S  Y  D  *  R  G  C  S  N  I  S  F  S  I  V  Q  H  A  M  R  E  I  E  I  D  S  L  G  C  L  I  S  L  N  S  I  S  A  N  Y  W  K  S  L  S  K  L  K  S  M  K  I  C  C  I  P  C  K  K  R  V  E  I  *  C  I  L  I  L  P  *  N  S  F  P  N  L  N  Y  G  S  H  I  *  Q  D  N  K  L  I  V  S  Q  L  A  V  L  Y  C  L  H  N  F  D  R  *  K  N  P  T  Y  K  K  R  K  *  M  D  R  K  R  T  Y  Y  Y  *  *  E  F  M  C  R  *  H  R  A  *  S  N  D  I  R  L  G  *  I  C  L  L  N  W  L  Y  K  *  C  H  L  F  Y  S  S  T  V  L  V  S  V  P  F  I  F  *  N  K  I  L  V  L  P  T  I  F  L  F  S  R  Y  F  *  I  *  *  S  N  E  L  S  F  L  A  I  C  L  L  T  G  V  E  Y  N  S  C  N  *  Y  K  C  F  L  L  A  *  V  I  L  M  G  K  F  C  D  Y  M  E  *  L  R  *  F  Y  L  E  A  L  S  Y  M  G  Q  L  I  L  I  S  *  *  L  *  I  V  F  K </second_frame>
            <third_frame>   R  C  G  L  L  *  K  V  R  F  I  F  L  G  F  *  I  L  C  S  K  L  R  I  R  I  S  H  K  H  L  Y  I  P  Q  H  S  Y  F  L  N  L  L  R  S  V  E  L  M  S  L  V  M  L  L  Y  I  H  G  Y  G  S  L  C  S  T  E  K  N  F  *  S  V  C  *  L  L  P  I  P  V  F  T  *  *  S  R  I  *  *  R  I  E  D  S  E  W  I  E  G  K  L  L  S  *  T  I  L  *  Y  D  P  *  P  S  L  R  Y  N  A  W  R  N  *  L  E  T  I  L  G  I  K  F  T  F  Y  F  L  F  *  P  G  I  S  G  L  F  S  V  V  P  L  T  F  H  S  T  S  M  Q  Y  W  L  N  R  S  A  F  E  P  T  N  S  N  N  P  D  F  Y  R  M  T  K  E  D  A  L  T  L  V  S  P  S  C  S  M  L  C  V  R  L  R  *  I  A  W  D  V  *  F  L  *  I  Q  S  V  Q  I  I  G  R  V  S  Q  S  S  K  A  *  K  Y  V  A  S  L  V  K  K  G  W  K  Y  D  A  S  *  F  C  P  K  T  L  F  L  I  *  I  M  D  L  I  Y  D  R  I  I  N  *  *  Y  H  N  *  L  F  C  T  A  Y  I  T  L  I  D  R  K  I  L  L  T  K  K  G  N  R  W  I  G  N  A  R  I  I  T  D  K  N  S  C  V  D  S  T  E  H  E  A  M  T  Y  G  L  V  R  S  V  Y  *  I  G  C  I  N  N  V  I  C  F  I  H  R  L  Y  L  F  L  Y  H  L  F  F  K  I  K  S  S  C  C  L  P  Y  F  Y  F  Q  D  I  F  K  F  N  D  R  M  S  S  L  F  L  Q  Y  V  S  *  L  E  L  N  I  T  H  V  T  S  I  N  A  S  Y  *  L  E  *  F  *  W  G  S  S  V  I  I  W  S  S  L  G  D  F  I  W  K  L  S  V  T  W  D  N  L  S  *  S  A  N  N  Y  R  *  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0080H23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="85750" e_stop="85316"/>
            <exon e_start="82740" e_stop="82560"/>
            <exon e_start="82442" e_stop="82067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="0.956"/>
          <exon-intron don_prob="0.982" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="85750" e_stop="85316" e_length="435"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82740" e_stop="82560" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.986">
            <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="82442" e_stop="82067" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85750" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85739" stop="85316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335455" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTCAGATACCATAAATTCCTAATTCCTTTCAAGAAAAAAAAAAAAAAGTAAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG : GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG : CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTCATTCTTGAACCGCGCTCTTATTCAATTCAACCTTAGTAGTTTCTAACAGGTTGCACATCCCTGTTGAAGTTCTTGTATAATTGTCAATTA</gDNA_template>
            <first_frame> L  S  Q  I  P  *  I  P  N  S  F  Q  E  K  K  K  K  V  K  K  *  K  *  K  K  K  N  G  R  R  W  R  S  S  C  R  R  R  C  F  F  Y  F  L  R  R  V  S  V  D  L  H  L  I  T  A  I  S  T  P  S  G  *  I  D  T  S  H  P  L  S  V  D  L  L  R  Y  D  R  F  H  L  C  Y  S  R  V  H  G  S  R  F  L  H  H  H  I  C  F  R  N  L  H  N  P  A  P  Y  C  F  P  F  P  S  S  R  S  R  S  *  R  S  Y  P  S  H  S  R  I  R  *  V  S  P  F  R  S  S  P  S  *  I  *  I  L  :  V  L  T  I  K  S  S  L  H  C  F  C  V  D  I  L  Q  C  L  *  C  A  C  I  L  A  N  F  V  I  L  L  V  G  T  V  C  F  N  D  E  E  A  N  N  A  H  G  Q  I  *  I  C  A  L  H  I  W  Q  A   : A  L  R  E  E  S  T  I  N  *  *  E  K  C  F  Q  T  L  R  F  K  V  E  *  A  F  Y  G  G  E  *  I  C  F  *  Y  K  F  A  *  M  A  V  F  F  T  G  *  V  S  E  L  G  L  C  H  *  I  Y  D  Y  Q  *  V  L  R  L  *  N  L  V  L  L  E  A  A  T  H  L  D  S  F  V  Y  L  *  A  S  L  W  M  S  I  L  S  S  F  L  N  R  A  L  I  Q  F  N  L  S  S  F  *  Q  V  A  H  P  C  *  S  S  C  I  I  V  N   </first_frame>
            <second_frame>  F  L  R  Y  H  K  F  L  I  P  F  K  K  K  K  K  K  *  K  S  K  N  K  K  K  K  M  D  V  G  G  G  A  V  A  G  D  G  A  S  S  T  S  S  A  V  S  Q  W  T  F  T  L  S  Q  R  Y  Q  H  L  L  D  K  S  T  P  H  I  L  Y  R  W  I  F  F  A  T  I  A  F  I  F  A  I  R  V  F  M  V  Q  G  F  Y  I  I  T  Y  A  L  G  I  Y  I  I  Q  L  L  I  A  F  L  S  P  Q  V  D  P  E  V  D  G  P  T  L  P  T  R  G  S  D  E  F  R  P  F  V  R  R  L  P  E  F  K  F  W :   Y  S  L  S  K  A  V  C  I  A  F  V  L  T  F  F  S  A  F  D  V  P  V  F  W  P  I  L  L  F  Y  W  L  V  L  F  V  S  T  M  K  R  Q  I  M  H  M  V  K  Y  K  Y  V  P  F  T  F  G  K  Q  :  R  Y  G  K  K  A  P  S  T  D  E  R  S  V  S  K  P  *  G  S  K  W  N  E  L  F  M  V  G  N  E  F  V  F  D  T  N  S  P  R  W  L  Y  F  S  P  D  R  F  L  S  L  G  Y  V  I  E  Y  M  I  I  N  E  F  L  D  Y  K  T  *  F  S  *  K  L  P  H  I  L  I  L  S  F  I  C  K  L  A  S  G  C  Q  Y  *  A  H  S  *  T  A  L  L  F  N  S  T  L  V  V  S  N  R  L  H  I  P  V  E  V  L  V  *  L  S  I  </second_frame>
            <third_frame>   F  S  D  T  I  N  S  *  F  L  S  R  K  K  K  K  S  K  K  V  K  I  K  K  K  K  W  T  S  V  A  E  Q  L  P  A  T  V  L  L  L  L  P  P  P  C  L  S  G  P  S  P  Y  H  S  D  I  N  T  F  W  I  N  R  H  L  T  S  F  I  G  G  S  S  S  L  R  S  L  S  S  L  L  F  A  C  S  W  F  K  V  S  T  S  S  H  M  L  *  E  S  T  *  S  S  S  L  L  L  S  F  P  L  K  S  I  Q  K  L  T  V  L  P  F  P  L  A  D  P  M  S  F  A  L  S  F  V  A  F  L  N  L  N  S   : G  T  H  Y  Q  K  Q  S  A  L  L  L  C  *  H  S  S  V  P  L  M  C  L  Y  F  G  Q  F  C  Y  S  I  G  W  Y  C  L  F  Q  R  *  R  G  K  *  C  T  W  S  N  I  N  M  C  P  S  H  L  A  S  S :   V  T  G  R  K  H  H  Q  L  M  R  E  V  F  P  N  L  E  V  Q  S  G  M  S  F  L  W  W  G  M  N  L  F  L  I  Q  I  R  L  D  G  C  I  F  H  R  I  G  F  *  A  W  V  M  S  L  N  I  *  L  S  M  S  S  *  I  I  K  L  S  S  P  R  S  C  H  T  S  *  F  F  R  L  S  V  S  *  P  L  D  V  N  I  E  L  I  L  E  P  R  S  Y  S  I  Q  P  *  *  F  L  T  G  C  T  S  L  L  K  F  L  Y  N  C  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85695" stop="85316"/>
                    <exon start="82740" stop="82560"/>
                    <exon start="82442" stop="82389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKNKKKKMDVGGGAVAGDGASSTSSAVSQWTFTLSQRYQHLLDKSTPHILYRWIFFATIAFIFAIRVFMVQGFYIITYALGIYIIQLLIAFLSPQVDPEVDGPTLPTRGSDEFRPFVRRLPEFKFWYSLSKAVCIAFVLTFFSAFDVPVFWPILLFYWLVLFVSTMKRQIMHMVKYKYVPFTFGKQRYGKKAPSTDERSVSKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="83412" e_stop="82560"/>
            <exon e_start="82442" e_stop="82222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83412" e_stop="82560" e_length="853"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.986">
            <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="82442" e_stop="82222" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83412" stop="82560"/>
              <exon start="82442" stop="82222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG : CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAA</gDNA_template>
            <first_frame> M  F  R  L  S  G  K  R  K  V  N  L  G  T  S  F  *  P  V  M  L  I  T  K  S  I  W  F  P  P  S  S  S  L  S  L  P  V  M  V  P  D  P  M  L  *  *  F  *  *  P  G  *  I  *  I  V  D  L  E  L  L  *  Y  A  S  A  S  A  R  A  E  Q  T  S  S  R  P  S  S  F  T  H  T  *  L  S  E  F  C  Y  F  A  I  S  L  R  A  L  L  F  *  T  D  A  W  C  P  G  Q  L  E  H  T  S  S  I  P  L  C  T  *  C  S  V  A  F  H  L  H  M  Y  *  V  I  L  P  T  K  A  K  V  D  G  I  *  T  L  I  S  K  V  C  T  C  F  I  N  H  *  P  T  P  L  G  A  L  R  S  E  D  S  H  *  S  R  S  L  N  H  I  A  E  L  F  H  C  A  L  H  L  F  A  C  T  S  V  S  R  R  H  H  P  D  L  L  A  I  L  S  S  *  I  S  S  L  A  *  F  S  F  P  W  Q  V  L  T  I  K  S  S  L  H  C  F  C  V  D  I  L  Q  C  L  *  C  A  C  I  L  A  N  F  V  I  L  L  V  G  T  V  C  F  N  D  E  E  A  N  N  A  H  G  Q  I  *  I  C  A  L  H  I  W  Q  A   : A  L  R  E  E  S  T  I  N  *  *  E  K  C  F  Q  T  L  R  F  K  V  E  *  A  F  Y  G  G  E  *  I  C  F  *  Y  K  F  A  *  M  A  V  F  F  T  G  *  V  S  E  L  G  L  C  H  *  I  Y  D  Y  Q  *  V  L  R  L  *  N  L  V  L  L  E </first_frame>
            <second_frame>  C  S  D  C  L  E  K  E  K  *  T  W  G  P  A  S  D  Q  S  C  *  S  P  S  L  F  G  F  H  P  V  V  L  C  L  S  Q  *  W  F  L  I  R  C  C  N  S  F  S  S  R  D  E  Y  E  L  L  T  L  S  F  C  D  M  L  Q  P  V  Q  G  Q  S  R  L  L  L  D  L  P  P  L  H  T  L  S  Y  L  N  F  V  I  S  Q  Y  L  C  V  L  Y  Y  F  K  L  M  L  G  V  Q  A  S  L  S  I  P  Q  V  F  H  Y  V  P  D  A  V  L  L  S  T  C  T  C  T  R  *  S  C  L  P  K  L  R  W  M  V  F  E  L  *  S  P  R  F  A  P  A  S  L  T  T  S  P  H  P  W  V  R  C  A  P  R  I  P  I  E  V  D  H  L  I  I  *  Q  N  F  F  I  V  R  F  I  Y  L  P  V  L  P  L  V  V  G  I  I  Q  I  C  W  Q  Y  Y  L  L  E  L  V  V  W  H  N  F  L  F  L  G  R  Y  S  L  S  K  A  V  C  I  A  F  V  L  T  F  F  S  A  F  D  V  P  V  F  W  P  I  L  L  F  Y  W  L  V  L  F  V  S  T  M  K  R  Q  I  M  H  M  V  K  Y  K  Y  V  P  F  T  F  G  K  Q  :  R  Y  G  K  K  A  P  S  T  D  E  R  S  V  S  K  P  *  G  S  K  W  N  E  L  F  M  V  G  N  E  F  V  F  D  T  N  S  P  R  W  L  Y  F  S  P  D  R  F  L  S  L  G  Y  V  I  E  Y  M  I  I  N  E  F  L  D  Y  K  T  *  F  S  *   </second_frame>
            <third_frame>   V  Q  I  V  W  K  K  K  S  K  L  G  D  Q  L  L  T  S  H  A  D  H  Q  V  Y  L  V  S  T  Q  *  F  F  V  S  P  S  N  G  S  *  S  D  V  V  I  V  L  V  A  G  M  N  M  N  C  *  P  *  A  S  V  I  C  F  S  Q  C  K  G  R  A  D  F  F  *  T  F  L  L  Y  T  H  L  V  I  *  I  L  L  F  R  N  I  F  A  C  F  I  I  L  N  *  C  L  V  S  R  P  A  *  A  Y  L  K  Y  S  T  M  Y  L  M  Q  C  C  F  P  L  A  H  V  L  G  N  L  A  Y  Q  S  *  G  G  W  Y  L  N  S  N  L  Q  G  L  H  L  L  H  *  P  L  A  H  T  L  G  C  V  A  L  R  G  F  P  L  K  S  I  T  *  S  Y  S  R  T  F  S  L  C  A  S  F  I  C  L  Y  F  R  *  S  *  A  S  S  R  F  V  G  N  I  I  F  L  N  *  *  F  G  I  I  F  F  S  L  A  G  T  H  Y  Q  K  Q  S  A  L  L  L  C  *  H  S  S  V  P  L  M  C  L  Y  F  G  Q  F  C  Y  S  I  G  W  Y  C  L  F  Q  R  *  R  G  K  *  C  T  W  S  N  I  N  M  C  P  S  H  L  A  S  S :   V  T  G  R  K  H  H  Q  L  M  R  E  V  F  P  N  L  E  V  Q  S  G  M  S  F  L  W  W  G  M  N  L  F  L  I  Q  I  R  L  D  G  C  I  F  H  R  I  G  F  *  A  W  V  M  S  L  N  I  *  L  S  M  S  S  *  I  I  K  L  S  S  P  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82868" stop="82560"/>
                    <exon start="82442" stop="82389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNFFIVRFIYLPVLPLVVGIIQICWQYYLLELVVWHNFLFLGRYSLSKAVCIAFVLTFFSAFDVPVFWPILLFYWLVLFVSTMKRQIMHMVKYKYVPFTFGKQRYGKKAPSTDERSVSKP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83297" stop="83010"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WFLIRCCNSFSSRDEYELLTLSFCDMLQPVQGQSRLLLDLPPLHTLSYLNFVISQYLCVLYYFKLMLGVQASLSIPQVFHYVPDAVLLSTCTCTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="92201" PGL_stop="90124"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92201" e_stop="90124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="92201" e_stop="90124" e_length="2078"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92201" stop="90124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323410" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATTAAATCCGAACTAATTTTATTTTCAGGTCCGCTATCAAACTCACCTGTAAATTGCAACTTCATCCGAAAAAGACGAACGCAAAAGGGCTGGTGAAATAGTAAGTGGATATAGTGACCTTGACCTATCTTTGTTATTCTAGTGGTGGATGGGTCAGTCAGCTTCCACCGTCGCCGGAGCTCAAAACCGTATAAAGTCTAGATCTTCGCCGGTGATTTCTTCTATGAAGGAAATTGATGATTCCGACGATGTTATCGATGTATTCGATGTAGGAGAGTTTGATTATTCTTCTAATATTCCTGATGAGTGTTTAGCTTGCATTTTCCATTTCCTTAGCTCAGGTGACCGGAAAAGTTCTTCTCTCGTCTGCCGCCGTTGGCTCCGTGTGGAAGGCCAGAGCCGTCACCGTCTCTCGCTTAATGCACAATCGGAACTTGTGGCTGTTGTTCCTGTGATTTTCTCTAGGTTTGATTCGGTAACGAAACTCGCTTTGAAATGTGACCGTAGATCTGCGAGTATTGGGGATGAGGCGTTGGTGCTTATCTCTTTAAGGTGCCGGAACCTAACTCGTTTGAAGCTTCGGTCGTGCCGGGAGCTTACTGATGCTGGAATGGAATCTTTTGCGAAGAACTGTAAGGGTTTGAAGAAACTATCTTGTGGATCTTGTGCTTTTGGAGCTAAAGGGATGAACGCCGTGTTGAATAACTGCTCGGCTCTGGAAGAGTTGTCCGTGAAGCGGCTGCGTGGTATCACAGATGGGGCTGCAGCTGAGCCAATTGGTCCTGGTGTTGCAGGGGGTTCTCTGAGAGTTATTTGCCTTAAGGAACTCTACAATGGACAGTGTTTTGGACCGTTGATTATTGGATCGAAGAGTTTGCGGACGCTGAAGCTGTTCCGTTGTTCTGGAGATTGGGATAAGATTCTGGAAGTGATTGCTGAACAAGTCAGTGAACTTGTTGAAATTCATCTTGAGAGGCTTCAGGTCAGTGATACCGGTCTTGCTGCTATATCTAAATGTTCCATTCTTGAAATTCTGCACCTTGTGAAAACGCCTGAATGCACTAATAATGGTCTAAAGGCTGTTGCTGAAAACTGTAAGCTTCTAAGAAAGCTTCACATTGATGGGTGGAAGACTAACAGGATAAGTGATGATGGGTTAATTGCTGTGGCAAAACATTGCCCCAATTTACAAGAATTGGTTTTAATAGGTGTGAATCCAACATGTGCTAGTTTGGAGAAGTTGGCTACAAATTGCTTGAATTTAGAGAGATTAGCTCTGTGTGGAAGTGAAACTGTTGGGGATCCAGAACTGTCGTGCATAGCTGCGAAATGTATTGCATTAAGAAAACTTTGTATAAAGAGTTGCCCAGTATCCGATCAGGGTATGGAAGCGCTTGCTAGTGGATGCCCAAATTTGGTAAAAGTAAAGGTTAAGAAATGTAGATTGGTGACTTCTGGAAGTGCAGATTGGTTGCGGACAACTAGGGGCTCCGTTGCTGTGAACTTGGATACACCTGAACCTGAAAATCCTGATGCAAGTGCCAGTGATGGTGGTTTGCCTGAAGTTGGCAATGAAATTAGGCAGGTGGCTGGCCAAGTAAGAGGTGTAAGTATTGCATCAAGCAGTACTGGGAGGTCAAATTCCTTTAAGGCCAGGCTAGGACTTGCAACAGGAAGGAATCTGGTGGCTTGCACATTCAGAAGGTGGTCGAGCTTTGGTGGGAGTTCGAGTTCCAGTTCCAGAAATAATTAGAAAAAAGGAGTTGACTGAGATCAATCTTATGCTCAAATATTCTGCTATTGAAGTTATTTGACTTTTATTACATTTATATATTCTTGAATTTGCATGCTAGTTAATGCAACAACAGATTCAGCCTTCATGGTTGGACCTTGTTCGTGAGTTTTCCTTCTTTTTGTTTTTGCTTATGTTGATGCTATTTTTGGGCTTGGTATGCTCCTTCAACGTGGAGTTCTTCATTTCTCCTGGGAGAGGACTCAACATTCTATCTTCTGAAAAAGAAAGGAAGGAAAAGGTTATAATCCAAGAAGTTGGTGATTTTGGACTACGTGTTTTA</gDNA_template>
            <first_frame> R  I  K  S  E  L  I  L  F  S  G  P  L  S  N  S  P  V  N  C  N  F  I  R  K  R  R  T  Q  K  G  W  *  N  S  K  W  I  *  *  P  *  P  I  F  V  I  L  V  V  D  G  S  V  S  F  H  R  R  R  S  S  K  P  Y  K  V  *  I  F  A  G  D  F  F  Y  E  G  N  *  *  F  R  R  C  Y  R  C  I  R  C  R  R  V  *  L  F  F  *  Y  S  *  *  V  F  S  L  H  F  P  F  P  *  L  R  *  P  E  K  F  F  S  R  L  P  P  L  A  P  C  G  R  P  E  P  S  P  S  L  A  *  C  T  I  G  T  C  G  C  C  S  C  D  F  L  *  V  *  F  G  N  E  T  R  F  E  M  *  P  *  I  C  E  Y  W  G  *  G  V  G  A  Y  L  F  K  V  P  E  P  N  S  F  E  A  S  V  V  P  G  A  Y  *  C  W  N  G  I  F  C  E  E  L  *  G  F  E  E  T  I  L  W  I  L  C  F  W  S  *  R  D  E  R  R  V  E  *  L  L  G  S  G  R  V  V  R  E  A  A  A  W  Y  H  R  W  G  C  S  *  A  N  W  S  W  C  C  R  G  F  S  E  S  Y  L  P  *  G  T  L  Q  W  T  V  F  W  T  V  D  Y  W  I  E  E  F  A  D  A  E  A  V  P  L  F  W  R  L  G  *  D  S  G  S  D  C  *  T  S  Q  *  T  C  *  N  S  S  *  E  A  S  G  Q  *  Y  R  S  C  C  Y  I  *  M  F  H  S  *  N  S  A  P  C  E  N  A  *  M  H  *  *  W  S  K  G  C  C  *  K  L  *  A  S  K  K  A  S  H  *  W  V  E  D  *  Q  D  K  *  *  W  V  N  C  C  G  K  T  L  P  Q  F  T  R  I  G  F  N  R  C  E  S  N  M  C  *  F  G  E  V  G  Y  K  L  L  E  F  R  E  I  S  S  V  W  K  *  N  C  W  G  S  R  T  V  V  H  S  C  E  M  Y  C  I  K  K  T  L  Y  K  E  L  P  S  I  R  S  G  Y  G  S  A  C  *  W  M  P  K  F  G  K  S  K  G  *  E  M  *  I  G  D  F  W  K  C  R  L  V  A  D  N  *  G  L  R  C  C  E  L  G  Y  T  *  T  *  K  S  *  C  K  C  Q  *  W  W  F  A  *  S  W  Q  *  N  *  A  G  G  W  P  S  K  R  C  K  Y  C  I  K  Q  Y  W  E  V  K  F  L  *  G  Q  A  R  T  C  N  R  K  E  S  G  G  L  H  I  Q  K  V  V  E  L  W  W  E  F  E  F  Q  F  Q  K  *  L  E  K  R  S  *  L  R  S  I  L  C  S  N  I  L  L  L  K  L  F  D  F  Y  Y  I  Y  I  F  L  N  L  H  A  S  *  C  N  N  R  F  S  L  H  G  W  T  L  F  V  S  F  P  S  F  C  F  C  L  C  *  C  Y  F  W  A  W  Y  A  P  S  T  W  S  S  S  F  L  L  G  E  D  S  T  F  Y  L  L  K  K  K  G  R  K  R  L  *  S  K  K  L  V  I  L  D  Y  V  F   </first_frame>
            <second_frame>  E  L  N  P  N  *  F  Y  F  Q  V  R  Y  Q  T  H  L  *  I  A  T  S  S  E  K  D  E  R  K  R  A  G  E  I  V  S  G  Y  S  D  L  D  L  S  L  L  F  *  W  W  M  G  Q  S  A  S  T  V  A  G  A  Q  N  R  I  K  S  R  S  S  P  V  I  S  S  M  K  E  I  D  D  S  D  D  V  I  D  V  F  D  V  G  E  F  D  Y  S  S  N  I  P  D  E  C  L  A  C  I  F  H  F  L  S  S  G  D  R  K  S  S  S  L  V  C  R  R  W  L  R  V  E  G  Q  S  R  H  R  L  S  L  N  A  Q  S  E  L  V  A  V  V  P  V  I  F  S  R  F  D  S  V  T  K  L  A  L  K  C  D  R  R  S  A  S  I  G  D  E  A  L  V  L  I  S  L  R  C  R  N  L  T  R  L  K  L  R  S  C  R  E  L  T  D  A  G  M  E  S  F  A  K  N  C  K  G  L  K  K  L  S  C  G  S  C  A  F  G  A  K  G  M  N  A  V  L  N  N  C  S  A  L  E  E  L  S  V  K  R  L  R  G  I  T  D  G  A  A  A  E  P  I  G  P  G  V  A  G  G  S  L  R  V  I  C  L  K  E  L  Y  N  G  Q  C  F  G  P  L  I  I  G  S  K  S  L  R  T  L  K  L  F  R  C  S  G  D  W  D  K  I  L  E  V  I  A  E  Q  V  S  E  L  V  E  I  H  L  E  R  L  Q  V  S  D  T  G  L  A  A  I  S  K  C  S  I  L  E  I  L  H  L  V  K  T  P  E  C  T  N  N  G  L  K  A  V  A  E  N  C  K  L  L  R  K  L  H  I  D  G  W  K  T  N  R  I  S  D  D  G  L  I  A  V  A  K  H  C  P  N  L  Q  E  L  V  L  I  G  V  N  P  T  C  A  S  L  E  K  L  A  T  N  C  L  N  L  E  R  L  A  L  C  G  S  E  T  V  G  D  P  E  L  S  C  I  A  A  K  C  I  A  L  R  K  L  C  I  K  S  C  P  V  S  D  Q  G  M  E  A  L  A  S  G  C  P  N  L  V  K  V  K  V  K  K  C  R  L  V  T  S  G  S  A  D  W  L  R  T  T  R  G  S  V  A  V  N  L  D  T  P  E  P  E  N  P  D  A  S  A  S  D  G  G  L  P  E  V  G  N  E  I  R  Q  V  A  G  Q  V  R  G  V  S  I  A  S  S  S  T  G  R  S  N  S  F  K  A  R  L  G  L  A  T  G  R  N  L  V  A  C  T  F  R  R  W  S  S  F  G  G  S  S  S  S  S  S  R  N  N  *  K  K  G  V  D  *  D  Q  S  Y  A  Q  I  F  C  Y  *  S  Y  L  T  F  I  T  F  I  Y  S  *  I  C  M  L  V  N  A  T  T  D  S  A  F  M  V  G  P  C  S  *  V  F  L  L  F  V  F  A  Y  V  D  A  I  F  G  L  G  M  L  L  Q  R  G  V  L  H  F  S  W  E  R  T  Q  H  S  I  F  *  K  R  K  E  G  K  G  Y  N  P  R  S  W  *  F  W  T  T  C  F  </second_frame>
            <third_frame>   N  *  I  R  T  N  F  I  F  R  S  A  I  K  L  T  C  K  L  Q  L  H  P  K  K  T  N  A  K  G  L  V  K  *  *  V  D  I  V  T  L  T  Y  L  C  Y  S  S  G  G  W  V  S  Q  L  P  P  S  P  E  L  K  T  V  *  S  L  D  L  R  R  *  F  L  L  *  R  K  L  M  I  P  T  M  L  S  M  Y  S  M  *  E  S  L  I  I  L  L  I  F  L  M  S  V  *  L  A  F  S  I  S  L  A  Q  V  T  G  K  V  L  L  S  S  A  A  V  G  S  V  W  K  A  R  A  V  T  V  S  R  L  M  H  N  R  N  L  W  L  L  F  L  *  F  S  L  G  L  I  R  *  R  N  S  L  *  N  V  T  V  D  L  R  V  L  G  M  R  R  W  C  L  S  L  *  G  A  G  T  *  L  V  *  S  F  G  R  A  G  S  L  L  M  L  E  W  N  L  L  R  R  T  V  R  V  *  R  N  Y  L  V  D  L  V  L  L  E  L  K  G  *  T  P  C  *  I  T  A  R  L  W  K  S  C  P  *  S  G  C  V  V  S  Q  M  G  L  Q  L  S  Q  L  V  L  V  L  Q  G  V  L  *  E  L  F  A  L  R  N  S  T  M  D  S  V  L  D  R  *  L  L  D  R  R  V  C  G  R  *  S  C  S  V  V  L  E  I  G  I  R  F  W  K  *  L  L  N  K  S  V  N  L  L  K  F  I  L  R  G  F  R  S  V  I  P  V  L  L  L  Y  L  N  V  P  F  L  K  F  C  T  L  *  K  R  L  N  A  L  I  M  V  *  R  L  L  L  K  T  V  S  F  *  E  S  F  T  L  M  G  G  R  L  T  G  *  V  M  M  G  *  L  L  W  Q  N  I  A  P  I  Y  K  N  W  F  *  *  V  *  I  Q  H  V  L  V  W  R  S  W  L  Q  I  A  *  I  *  R  D  *  L  C  V  E  V  K  L  L  G  I  Q  N  C  R  A  *  L  R  N  V  L  H  *  E  N  F  V  *  R  V  A  Q  Y  P  I  R  V  W  K  R  L  L  V  D  A  Q  I  W  *  K  *  R  L  R  N  V  D  W  *  L  L  E  V  Q  I  G  C  G  Q  L  G  A  P  L  L  *  T  W  I  H  L  N  L  K  I  L  M  Q  V  P  V  M  V  V  C  L  K  L  A  M  K  L  G  R  W  L  A  K  *  E  V  *  V  L  H  Q  A  V  L  G  G  Q  I  P  L  R  P  G  *  D  L  Q  Q  E  G  I  W  W  L  A  H  S  E  G  G  R  A  L  V  G  V  R  V  P  V  P  E  I  I  R  K  K  E  L  T  E  I  N  L  M  L  K  Y  S  A  I  E  V  I  *  L  L  L  H  L  Y  I  L  E  F  A  C  *  L  M  Q  Q  Q  I  Q  P  S  W  L  D  L  V  R  E  F  S  F  F  L  F  L  L  M  L  M  L  F  L  G  L  V  C  S  F  N  V  E  F  F  I  S  P  G  R  G  L  N  I  L  S  S  E  K  E  R  K  E  K  V  I  I  Q  E  V  G  D  F  G  L  R  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92056" stop="90446"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1608</number_coding_nucleotides>
                  <number_encoded_amino_acids>536</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WWMGQSASTVAGAQNRIKSRSSPVISSMKEIDDSDDVIDVFDVGEFDYSSNIPDECLACIFHFLSSGDRKSSSLVCRRWLRVEGQSRHRLSLNAQSELVAVVPVIFSRFDSVTKLALKCDRRSASIGDEALVLISLRCRNLTRLKLRSCRELTDAGMESFAKNCKGLKKLSCGSCAFGAKGMNAVLNNCSALEELSVKRLRGITDGAAAEPIGPGVAGGSLRVICLKELYNGQCFGPLIIGSKSLRTLKLFRCSGDWDKILEVIAEQVSELVEIHLERLQVSDTGLAAISKCSILEILHLVKTPECTNNGLKAVAENCKLLRKLHIDGWKTNRISDDGLIAVAKHCPNLQELVLIGVNPTCASLEKLATNCLNLERLALCGSETVGDPELSCIAAKCIALRKLCIKSCPVSDQGMEALASGCPNLVKVKVKKCRLVTSGSADWLRTTRGSVAVNLDTPEPENPDASASDGGLPEVGNEIRQVAGQVRGVSIASSSTGRSNSFKARLGLATGRNLVACTFRRWSSFGGSSSSSSRNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90345" stop="90124"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMQQQIQPSWLDLVREFSFFLFLLMLMLFLGLVCSFNVEFFISPGRGLNILSSEKERKEKVIIQEVGDFGLRVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 23 chains have been computed
$ 
$ memory statistics:
$ 32240 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2015 bytes was the average size of a spliced alignment
$ 15816 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1757 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 31 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 17:42:39
-->
