<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:54:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322505" ref_strand="+" ref_description="SGN-U322505        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | kelch repeat-containing F-box family protein, weak similarity to Kelch-like protein 5 (Swiss-Prot:Q96PQ7) (Homo sapiens); contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain | chr2:837886-840128 FORWARD | Aliases: T17M13.4, T17M13_4(evalue: 2e-153, score=539) genbank/nr: gi|48210029|gb|AAT40540.1| putative protein-binding protein [Solanum demissum] (evalue: 0, score=664)">
      <seq>gatggaagagagataaaaggggtcctctgaaaaattatgccccaaagcagaagccaaagtctactttgattgtacaaagaatccacagaaacaaaaaaatcacacaaaaaaaagaagaaaaagagagcaaaatcacacacatacacacagttgaattttaagttgaagatgtatacataaatctaatcaggttgaacctggacgatatgttggaagatcgatcttgtttggttcctagggatttctcaagagaaaacaacaactggtcggcctgcattaattacagcctcgatatgattgaagttcagaatggtaaaaggccattggaaaataatcaggaggatgaagttgtgcaacgcaagttgccaaagctatctgatgctcgtgatggaaaagaagtcgttctagcctcaccacatgaccaagctggtgatcagcgtcatgatgaagatactagttctcttattccttccattggccgagacaactctgttagctctctcattcattgctccaggtctgattttggggctattgcatctttaaatcgtagctttcgctcgttaattagtagtggggagctttacagactgaggcgtcaacaaggcgtggttgagcattgggtttatttttcttgccatctacgtcaatgggaagcttttgaccccattcgtcgccgttggatgcatctaccatcaatgaatttcaatgaatgttttgtgttctcagacaaggagtctttagcagttgggacagagctgcttgtgtttggaaaggagatattgtcacatgtcatttatcgttatagtttgctgacaaacagttggtcagctggaacagaaatgaacgcaccaaggtgtttgtttggctctgccagctctggggagattgccattctagctggtggttgtgactcacagggcaatatcctcagctcagcagaactttacaattcagagactggaacatggaagaccttaccaagcatgaacaagcggcggaagatgtgttctgcagtatttatggacaaaaagttttacgtaattggaggcattggaggtacggagtcatcaaacgcgctactgacttgtggagaggaatatgatttgaaaacaggaaaatggactgaaatttcgagcatgtctcctgtccgagctaggggtgatatgcctgctacttctgaagcacctcctttggttgcggttgtgaataatgatttgtatgctgctgattatgctgacatggaggtgaggaagtatgacaagaaaaacaaaacatgggctactataggaagattgcctgaaagagcagcttcaatgaatggttggggcttggcttttcgagcttgtggtgataggctaattgtaatcggaggacctagaaccatgggtgaagggcatatcgaagttaattcatgggttcctagtgaaggaccgcctcagtggaacttgcttggacgaaagcgatctggtagctttgtgtataattgtgctgtcatgggttgctgacatatgatttttgcaagtagatacagaattgggaattcttgccaattggtaacttatcccaaccttttcgtttctgaatccttctgttttatcttatcagattaccaaactatacccaatattcaacagaattacgttatttagaaggtcgatcctgagtacgacttatctcatctcccattttcatttgcataaaactccaaaggcggccgcagaggtaaaatattaacttgaagatgggagcaatacagtgatagattttggttatgctgtgatccttatttttcttgacattgttgaggaagaaaaataaggttttgtagtgatgttcatttgacatcttgttttatgtaccaaatacatttattcttgttgacaacaggctacaagttgagacaatattggtgcctttagaatgcctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="9232" stop="12650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9531" g_stop="9721" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9722" i_stop="10607" i_length="886">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10608" g_stop="12350" g_length="1743"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="1933" r_length="1743" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-U322505" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1934</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9531" e_stop="9721"/>
          <exon e_start="10608" e_stop="12350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGAAGAGAGATAAAAGGGGTCCTCTGAAAAATTATGCCCCAAAGCAGAAGCCAAAGTCTACTTTGATTGTACAAAGAATCCACAGAAACAAAAAAATCACACAAAAAAAAGGAAGAAAAAGAGAGCAAAATCACACACATACACACAGTTGAATTTTAAGTTGAAGATGTATACATAAATCTAATCAGGTAAATGGTAATCTTTTTTTTTTGAGTTTTTATTTTGTAAGTATGATAAAGAGATCTAATTGAATTATTGGGATTGGGATTGAAATTAATACAAGATTTGTTTTTGAGTTTTTGGGTGTTTTTTGATGTGAAATTAGAGATCTGGGTTGGTGAAGTATGCATTTTTTATCCAAAGTTTCAGCTTTTATAGCAATTTTTGGGTGTTTTTGATTCTGGGAATCTGCTATTTTTGGTGAATTTTGATTATCTTTGGAGGGTTTACTGAACTTTCATGTATTGGAAAACTGAATCTTTGTGGATTTTACTTATCTTTTGATTGAAAGCTTCAATTTTTTGGGTGTTTCTGATTTCAAGTATGTAATTTCTGGTGAATTTAGTTATTTCCTGATATTCTTCAGTTGTTGTTTGTTCTTGCATGTTCATTTGATTGAAATTTTTCAGGTTTTGAGGTGTTTCTAGTTGTGTATATAGATTGGCTTCTGCAGTTATGATGTGTATTGAAGAATCAAGTAAATCTAAATTGTACCTTAAATGAGTGTGTGGTTGTAAATTTGCTTTTATTCTTTGTATTTGCGTAATCTGGATTGGCTTTATTCATTATAAGATACTGGAATTGCTTTATTTTGTGATCGAATTGATGTCGATGGAAAGAGTAGTTAGAGATTGATTTCCTTTCTTGTGCTTTTATGAGGGAGAATTTTGTTGTTTGGTTTCTTAGAATTCAATAGGTTTCTGTCTTTGTTTTGATGAATTCTTATTGGGAATTCTATTGGTTAGGTTGAATGTTGTGCTTTGATGAAGGAGAATTTTGTTGTTTGGTTATTTAGAATTCAATAGGTTTCTATCTATGTTTTGATGAATTCTTATTGGGAATTCTATTGGTTAGGTTGAACCTGGACGATATGTTGGAAGATCGATCTTGTTTGGTTCCTAGGGATTTCTCAAGAGAAAACAACAACTGGTCGGCCTGCATTAATTACAGCCTCGATATGATTGAAGTTCAGAATGGTAAAAGGCCATTGGAAAATAATCAGGAGGATGAAGTTGTGCAACGCAAGTTGCCAAAGCTATCTGATGCTCGTGATGGAAAAGAAGTCGTTCTAGCCTCACCACATGACCAAGCTGGTGATCAGCGTCATGATGAAGATACTAGTTCTCTTATTCCTTCCATTGGCCGAGACAACTCTGTTAGCTCTCTCATTCATTGCTCCAGGTCTGATTTTGGGGCTATTGCATCTTTAAATCGTAGCTTTCGCTCGTTAATTAGTAGTGGGGAGCTTTACAGACTGAGGCGTCAACAAGGCGTGGTTGAGCATTGGGTTTATTTTTCTTGCCATCTACGTCAATGGGAAGCTTTTGACCCCATTCGTCGCCGTTGGATGCATCTACCATCAATGAATTTCAATGAATGTTTTGTGTTCTCAGACAAGGAGTCTTTAGCAGTTGGGACAGAGCTGCTTGTGTTTGGAAAGGAGATATTGTCACATGTCATTTATCGTTATAGTTTGCTGACAAACAGTTGGTCAGCTGGAACAGAAATGAACGCACCAAGGTGTTTGTTTGGCTCTGCCAGCTCTGGGGAGATTGCCATTCTAGCTGGTGGTTGTGACTCACAGGGCAATATCCTCAGCTCAGCAGAACTTTACAATTCAGAGACTGGAACATGGAAGACCTTACCAAGCATGAACAAGCGGCGGAAGATGTGTTCTGCAGTATTTATGGACAAAAAGTTTTACGTAATTGGAGGCATTGGAGGTACGGAGTCATCAAACGCGCTACTGACTTGTGGAGAGGAATATGATTTGAAAACAGGAAAATGGACTGAAATTTCGAGCATGTCTCCTGTCCGAGCTAGGGGTGATATGCCTGCTACTTCTGAAGCACCTCCTTTGGTTGCGGTTGTGAATAATGATTTGTATGCTGCTGATTATGCTGACATGGAGGTGAGGAAGTATGACAAGAAAAACAAAACATGGGCTACTATAGGAAGATTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGCTTGGCTTTTCGAGCTTGTGGTGATAGGCTAATTGTAATCGGAGGACCTAGAACCATGGGTGAAGGGCATATCGAAGTTAATTCATGGGTTCCTAGTGAAGGACCGCCTCAGTGGAACTTGCTTGGACGAAAGCGATCTGGTAGCTTTGTGTATAATTGTGCTGTCATGGGTTGCTGACATATGATTTTTGCAAGTAGATACAGAATTGGGAATTCTTGCCAATTGGTAACTTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAACTCCAAAGGCGGCCGCAGAGGTAAAATATTAACTTGAAGATGGGAGCAATACAGTGATAGATTTTGGTTATGCTGTGATCCTTATTTTTCTTGACATTGTTGAGGAAGAAAAATAAGGTTTTGTAGTGATGTTCATTTGACATCTTGTTTTATGTACCAAATACATTTATTCTTGTTGACAACAGGCTACAAGTTGAGACAATATTGGTGCCTTTAGAATGCCTTTCT</genome_strand>
        <mrna_strand>GATGGAAGAGAGATAAAAGGGGTCCTCTGAAAAATTATGCCCCAAAGCAGAAGCCAAAGTCTACTTTGATTGTACAAAGAATCCACAGAAACAAAAAAATCACACAAAAAAAA-GAAGAAAAAGAGAGCAAAATCACACACATACACACAGTTGAATTTTAAGTTGAAGATGTATACATAAATCTAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACCTGGACGATATGTTGGAAGATCGATCTTGTTTGGTTCCTAGGGATTTCTCAAGAGAAAACAACAACTGGTCGGCCTGCATTAATTACAGCCTCGATATGATTGAAGTTCAGAATGGTAAAAGGCCATTGGAAAATAATCAGGAGGATGAAGTTGTGCAACGCAAGTTGCCAAAGCTATCTGATGCTCGTGATGGAAAAGAAGTCGTTCTAGCCTCACCACATGACCAAGCTGGTGATCAGCGTCATGATGAAGATACTAGTTCTCTTATTCCTTCCATTGGCCGAGACAACTCTGTTAGCTCTCTCATTCATTGCTCCAGGTCTGATTTTGGGGCTATTGCATCTTTAAATCGTAGCTTTCGCTCGTTAATTAGTAGTGGGGAGCTTTACAGACTGAGGCGTCAACAAGGCGTGGTTGAGCATTGGGTTTATTTTTCTTGCCATCTACGTCAATGGGAAGCTTTTGACCCCATTCGTCGCCGTTGGATGCATCTACCATCAATGAATTTCAATGAATGTTTTGTGTTCTCAGACAAGGAGTCTTTAGCAGTTGGGACAGAGCTGCTTGTGTTTGGAAAGGAGATATTGTCACATGTCATTTATCGTTATAGTTTGCTGACAAACAGTTGGTCAGCTGGAACAGAAATGAACGCACCAAGGTGTTTGTTTGGCTCTGCCAGCTCTGGGGAGATTGCCATTCTAGCTGGTGGTTGTGACTCACAGGGCAATATCCTCAGCTCAGCAGAACTTTACAATTCAGAGACTGGAACATGGAAGACCTTACCAAGCATGAACAAGCGGCGGAAGATGTGTTCTGCAGTATTTATGGACAAAAAGTTTTACGTAATTGGAGGCATTGGAGGTACGGAGTCATCAAACGCGCTACTGACTTGTGGAGAGGAATATGATTTGAAAACAGGAAAATGGACTGAAATTTCGAGCATGTCTCCTGTCCGAGCTAGGGGTGATATGCCTGCTACTTCTGAAGCACCTCCTTTGGTTGCGGTTGTGAATAATGATTTGTATGCTGCTGATTATGCTGACATGGAGGTGAGGAAGTATGACAAGAAAAACAAAACATGGGCTACTATAGGAAGATTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGCTTGGCTTTTCGAGCTTGTGGTGATAGGCTAATTGTAATCGGAGGACCTAGAACCATGGGTGAAGGGCATATCGAAGTTAATTCATGGGTTCCTAGTGAAGGACCGCCTCAGTGGAACTTGCTTGGACGAAAGCGATCTGGTAGCTTTGTGTATAATTGTGCTGTCATGGGTTGCTGACATATGATTTTTGCAAGTAGATACAGAATTGGGAATTCTTGCCAATTGGTAACTTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAACTCCAAAGGCGGCCGCAGAGGTAAAATATTAACTTGAAGATGGGAGCAATACAGTGATAGATTTTGGTTATGCTGTGATCCTTATTTTTCTTGACATTGTTGAGGAAGAAAAATAAGGTTTTGTAGTGATGTTCATTTGACATCTTGTTTTATGTACCAAATACATTTATTCTTGTTGACAACAGGCTACAAGTTGAGACAATATTGGTGCCTTTAGAATGCCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339156" ref_strand="+" ref_description="SGN-U339156        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 40S ribosomal protein S9 (RPS9C), 40S ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528 | chr5:15967250-15968653 FORWARD | Aliases: MYH19.10, MYH19_10(evalue: 2e-53, score=142) genbank/nr: gi|53793731|gb|AAU93594.1| putative ribosomal protein [Solanum demissum] (evalue: 1e-56, score=152)">
      <seq>actaaggcgcatgagggagctttggagagttcagtatgctttgaaccgtatcaagaatgctgctagaatgcttctgacattggatgagaaggatccacgttgtatttttgaaggtgaagctctttcgaggaggatgaacaggtgtgggtggatggatgagagcgcaaaacaagctcgattatgtcttgggcctcaccgcggagaactttcttgtgcgtcatctccaaacactagtgttcaagaccggcatggctaagtcaatccattatgccagagtgctcattacgcaaaggcatatgagagttggtaggcaagtggtgaatgttgcttctttcatggtgagagtagactcccagaagcacattgacctctctgtcactagtacatttggcggagggcgtcctggaagagtgaaccgaactaaccaactgtctggtgccaagaaagctgctggtggtgacggagacgaagaggatgaagaatgatcaactaacttagggtgtggtccatggggcttgaagttctgacctatcttttttttgtgctatttgtggttgaccttcatgtactatttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14653" stop="12814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14353" g_stop="14054" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.375" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13114" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="577" r_length="276" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-U339156" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14353" e_stop="14054"/>
          <exon e_start="13389" e_stop="13114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGC-CAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAG</genome_strand>
        <mrna_strand>ACTAAGGCGCATGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAACCGTATCAAGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTTGTATTTTTGAAGGTGAAGCTCTTTCGAGGAGGATGAACAGGTGTGGGTGGATGGATGAGAGCGCAAAACAAGCTCGATTATGTCTTGGGCCTCACCGCGGAGAACTTTCTTGTGCGTCATCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATCCATTATGCCAGAGTGCTCATTACGCAAAGGCATATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAAGTGGTGAATGTTGCTTCTTTCATGGTGAGAGTAGACTCCCAGAAGCACATTGACCTCTCTGTCACTAGTACATTTGGCGGAGGGCGTCCTGGAAGAGTGAACCGAACTAACCAACTGTCTGGTGCCAAGAAAGCTGCTGGTGGTGACGGAGACGAAGAGGATGAAGAATGATCAACTAACTTAGGGTGTGGTCCATGGGGCTTGAAGTTCTGACCTATCTTTTTTTTGTGCTATTTGTGGTTGACCTTCATGTACTATTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342048" ref_strand="+" ref_description="SGN-U342048        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein, similar to SP:Q15459 Splicing factor 3 subunit 1 (Spliceosome associated protein 114) {Homo sapiens}; contains Pfam profiles PF00240: Ubiquitin family, PF01805: Surp module | chr1:5027657-5030787 FORWARD | Aliases: T5E21.13, T5E21_13(evalue: 2e-66, score=213) genbank/nr: SWAP/Surp;(evalue: 4e-78, score=253)">
      <seq>ttaggcatcacaccgatattgccccttccgggacccccgttggatgggaatctgggaccaacacctctagctcaggtggtagaggaaccaaatgatgttaagatggaagagaatgaagaggaaaacaataaggacaaggttccagcatctgttgcaacacatacgagaactattggtatcatttatccccctcctgatattaggagtattgttgacaagacttcacagtttgtggcgaagaatggtccggaatttgagaagaggattgttctaaataacgctggcaatgcaaaattcaacttcctgaatgcttctgatccttaccatgcctattatcagcaccgtttggctgaagctcgcgcacagaatcagggttctggagagcagcctactcagccagaagacaaagaagcaacccctgctcctaccgctgatgatgctgaggcaactgcaaaacctgacccatcagctcaatttagacctgtcagaaaggttcttgagccacctgaggcagagcaatatactgttcgactccctgaaaggatcacaggtgaagaaatggatatcataaagctgacatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="17953" stop="19140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18252" g_stop="18840" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-U342048" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18252" e_stop="18840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTACCACAACGATATTGCCCCTTCCGGCACCGCCGTTGGATGGGAATCTGGGACCAACACCTCCTGCTCAGGTGGTAGAGGAACCAGAGGATGATAGGATGGAAGAGAATGAAGAGGACAACAATAAAGGCAACAAGGTTCCAACATCTGTTGCTACACATACTAGAACTATTGGTATCATTTACCCTCCTCCAGATATTAGGAGTATTGTTGATAAGACTTCGCAGTTTGTTGCGAAGAATGGTCCGGAATTTGAGAAGAGAATTGTTCTAAATAATGCTGGCAATGCGAAATTTAACTTCTTGAATGCCTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGATGCTCGCGCACAGAATCAGGCTTCTGGAGAGCAGCCTACTCAGCCAGATGACAATGAAGCAGCCCCTGCTCCTCCTACTGCTGATGGTGCTGAGGCAACTGCTAAACCTGATCCGTCAGCTCAGTTTAGACCTGTAAGAAAGGTTCTCGAGCCACCTGAGGCAGAGCAATATACTGTAAGACTCCCTGAAGGGATCACAGGTGAAGAACTGGATATTATTAAGCTAACAGCAC</genome_strand>
        <mrna_strand>TTAGGCATCACACCGATATTGCCCCTTCCGGGACCCCCGTTGGATGGGAATCTGGGACCAACACCTCTAGCTCAGGTGGTAGAGGAACCAAATGATGTTAAGATGGAAGAGAATGAAGAGGAAAACAAT-AAGG--ACAAGGTTCCAGCATCTGTTGCAACACATACGAGAACTATTGGTATCATTTATCCCCCTCCTGATATTAGGAGTATTGTTGACAAGACTTCACAGTTTGTGGCGAAGAATGGTCCGGAATTTGAGAAGAGGATTGTTCTAAATAACGCTGGCAATGCAAAATTCAACTTCCTGAATGCTTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGAAGCTCGCGCACAGAATCAGGGTTCTGGAGAGCAGCCTACTCAGCCAGAAGACAAAGAAGCAACCCCTG---CTCCTACCGCTGATGATGCTGAGGCAACTGCAAAACCTGACCCATCAGCTCAATTTAGACCTGTCAGAAAGGTTCTTGAGCCACCTGAGGCAGAGCAATATACTGTTCGACTCCCTGAAAGGATCACAGGTGAAGAAATGGATATCATAAAGCTGACATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319892" ref_strand="+" ref_description="SGN-U319892        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein, similar to SP:Q15459 Splicing factor 3 subunit 1 (Spliceosome associated protein 114) {Homo sapiens}; contains Pfam profiles PF00240: Ubiquitin family, PF01805: Surp module | chr1:5027657-5030787 FORWARD | Aliases: T5E21.13, T5E21_13(evalue: 2e-47, score=186) genbank/nr: SWAP/Surp;(evalue: 9e-46, score=187)">
      <seq>ctgaagagaggatcctggcttaaagggacccaactaagtatgttgtctctcctataaccggtgagctcatacctattaatgagatgtctgaacatatgaggatctctctcattgatccaaagtacaaggaacagaaggacaggatgtttgcgaagattaaggagacgactcttgcgcaggatgatgagatttctaggaacattgttggacttgcaagaacccgtccggatatatttggtaccacagaagaagaagtttcaaatgcggtcaaggctgagattgagaaaaagaaggaagagccgaagcaagtcatatgggatggtcacacaggtagcattggtcgcactgcgaaccaggcaatgtctcagaacagtgatgatcagaatgatgctgcaaatgatgcaagaaaccttcctggaccgcaggctcctccacctcccagacctggttttccatctattaggccactacctccagtattctactcctggggttgctgctccgcctccacctcgacctcctatggttaacatgattcctcaggttcggcccccacctcctcccatgccacagatgccaggtcagcaaaatctcatggtgaatcgccctccaatgcctccatcgatgggtatgaattctcttaaccttcccattccaccacctcctggatcacaatttactcctttgggagcacctcgaccctttgttccccacccgatgtcccagcccggaatgtctatggtcccaccgcctcctatgccccaaggaatgccgccaccccctccaccagaggaagcgcctcctctccctgaagagccagagccaaagaggcaaaagcttgaagagtctattctcattcctgaagaccagtttttggctcagcactcgggacctgcaagggatcatatatctgtgccgaataccgatgaagggaatctcaaaggacaaattctggaaattacagtgcaatctctgtccgaaaccatttgcagtctaaagagaagatttctggggagattcagctgcctgcaaacaaacagaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="19156" stop="20981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19456" g_stop="19924" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19925" i_stop="19974" i_length="50">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.87"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19975" g_stop="20390" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="888" r_length="419" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20391" i_stop="20522" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20523" g_stop="20681" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="889" r_stop="1046" r_length="158" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-U319892" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1044</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19456" e_stop="19924"/>
          <exon e_start="19975" e_stop="20390"/>
          <exon e_start="20523" e_stop="20681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAGAGGATCCTGGCAGAAAGGGACCCAACTAAGTATGTTGTCTCTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAACCTTCCTGGACCGCAGGCTCCTCCACCTCCCAGACCTGGTTTTCCATCTATTAGGCCACTACCTCCACCACCTGGGCTTGCACTGAATATTCCTAGGCCTCCTAATACAG---TCCAGTATTCTACTCCTGGGGTTGCTGCTCCGCCTCCACCTCGACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAGAGCCAAAGAGGCAAAAGCTTGAAGAGTCTATTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCACTCGGTATGGATAGCTTTTTTTTTTCTTTTTCCCCCCAACTTTTACATAATTGTCTGGGTCTCTGAGAATTTTGCTTAATGCCTCAATTTTCTTACATTCATGGAAATTATGTTGCCTGCTGGGATTTTATTGCAGGGACCTGCAA-GGATCAATATATCTGTGCCGAATACCGATGAAGGGAATCTCAAAGGACAAATTCTGGAAATTACAGTGCAATCTCTGTCCGAAACCATTGCCAGTCTAAAAGAGAAGATTTCTGGGGAGATTCAGCTGCCTGCAAACAAACAGAAACTG</genome_strand>
        <mrna_strand>CTGAAGAGAGGATCCTGGCTTAAAGGGACCCAACTAAGTATGTTGTCTCTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAACCTTCCTGGACCGCAGGCTCCTCCACCTCCCAGACCTGGTTTTCCATCTATTAGGCCACT..................................................ACCTCCAGTATTCTACTCCTGGGGTTGCTGCTCCGCCTCCACCTCGACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAGAGCCAAAGAGGCAAAAGCTTGAAGAGTCTATTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCACTCG....................................................................................................................................GGACCTGCAAGGGATC-ATATATCTGTGCCGAATACCGATGAAGGGAATCTCAAAGGACAAATTCTGGAAATTACAGTGCAATCTCTGTCCGAAACCATTTGCAGTCT-AAAGAGAAGATTTCTGGGGAGATTCAGCTGCCTGCAAACAAACAGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336962" ref_strand="+" ref_description="SGN-U336962        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein, similar to human splicing factor GB:CAA59494 GI:899298 from (Homo sapiens); contains Pfam profile PF01805: Surp module | chr1:5023651-5025950 FORWARD | Aliases: T5E21.18, T5E21_18(evalue: 4e-21, score=99) genbank/nr: SWAP/Surp;(evalue: 1e-19, score=100)">
      <seq>tgacgactcttgcgcatgatgatgacatttctaggaaccttgttggacttgccagaacccctccggatatatttggtaccacataagatgaagtttctgatgcggtcaaggctgagattgataacaagaacgaagagccgaagctggtcatatgggatggtctcacaggtagcattggtcgcactgctaaccatgcgatgtctcagaacagtgatgatcaaaatgatgctgcgaatgatgcaagaaacctttctggaccggatgctcctccacctcccagagctgggtttccatctattatgccacgtacctccagtattctactcctggggttgctgctccggctccacctcgacctcctatggttaacgtgattcctcaggttcggcccccacctcctcccatgccacagatgccaggtcagcaaaatctcatggtgaatcgccctccaatgcctccatcgatgggtatgaattctcttaaccttgccattccgcctgcttctggatcacatttctctccgttgggagcacctcgaccctgtgttccccacccgatgtctcaacctggaatgtctatggtcccaccgactcctatgctcgatggaatgccgccaccccctccaccagaggaagcgcctcctctccctgattagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="19319" stop="20622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19618" g_stop="19929" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19930" i_stop="19979" i_length="50">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.85"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19980" g_stop="20322" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="659" r_length="346" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-U336962" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19618" e_stop="19929"/>
          <exon e_start="19980" e_stop="20322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAACCTTCCTGGACCGCAGGCTCCTCCACCTCCCAGACCTGGTTTTCCATCTATTAGGCCAC-TACCTCCACCACCTGGGCTTGCACTGAATATTCCTAGGCCTCCTAATACAGTCCAG---TATTCTACTCCTGGGGTTGCTGCTCCGCCTCCACCTCGACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAG</genome_strand>
        <mrna_strand>TGACGACTCTTGCGCATGATGATGACATTTCTAGGAACCTTGTTGGACTTGCCAGAACCCCTCCGGATATATTTGGTACCACATAAGATGAAGTTTCTGATGCGGTCAAGGCTGAGATTGATAACAAGAACGAAGAGCCGAAGCTGGTCATATGGGATGGTCTCACAGGTAGCATTGGTCGCACTGCTAACCATGCGATGTCTCAGAACAGTGATGATCAAAATGATGCTGCGAATGATGCAAGAAACCTTTCTGGACCGGATGCTCCTCCACCTCCCAGAGCTGGGTTTCCATCTATTATGCCACGTACCTC..................................................CAGTATTCTACTCCTGGGGTTGCTGCTCCGGCTCCACCTCGACCTCCTATGGTTAACGTGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTGCCATTCCGCCTGCTTCTGGATCACATTTCTCTCCGTTGGGAGCACCTCGACCCTGTGTTCCCCACCCGATGTCTCAACCTGGAATGTCTATGGTCCCACCGACTCCTATGCTCGATGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGATTAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323719" ref_strand="+" ref_description="SGN-U323719        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>gcacgagctcttgcgtactataatgttgcatctggagaaacacttggtctctcactaagagaacgtggtgggagaaagagatgaatggggagttatttggcatggtcttcaaaggtttattttgctactgttcggcatatctaatccttgttatgagttttaagaattctctatacttctttcatgttatttgggagattatactggtcttgtactttagtttttctttctgcatttaatcatctttatttttcaagctgatggctgagtatctactacagattttggcatgttggtgatcatccatgaggacaacaggaagtttactagttctatgtctataaagatgccatgactgtgggttcacacatttttgtttatgttactaattttgtgtttgtctcaccacctgcagttgctccaccttaactacagctcagttgttatttttttctatcttctgagtccaagccaccttagaacttttctgatgtcttcttggcaaacatttcttataattttggaggtttcccttagcaattaacatctcaaattcttctgtggactttaggacctatttctgtagaagatgtgcttgtcgtggtgggagacgcttgtcccaatcacacctgcctcttttgtgattcattcttttggtttgttttgatggagtctgctgtatccccgtggctcctctgatgtgcctttattttatcaacacagctttatacccctgttaggagatgtgatgtgttctgcatttgttggttgtgttgcgaggtccaatctcgacaacaaaaagcaggctttcgaaggatgttgcagacgattgatacgtctttcttatgtaatagttggaaattccttattttctggcagataatgtgccatcgtagtattcttctgctatgattcttataagttattggttgatcagtttatatatgtttatgcttttgtgcatgatattagctctagtgacatatacataacatattcatcaaaaaaaaaaaaaaaaaaaaaaaaaccccgggggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="20410" stop="74091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20708" g_stop="21351" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21352" i_stop="21437" i_length="86">
            <donor d_prob="0.278" d_score="1.00"/>
            <acceptor a_prob="0.228" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21438" g_stop="21599" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="805" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21600" i_stop="21693" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21694" g_stop="21896" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="1008" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21897" i_stop="22673" i_length="777">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22674" g_stop="22692" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1009" r_stop="1027" r_length="19" r_score="0.579"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22693" i_stop="23426" i_length="734">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23427" g_stop="23440" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1028" r_stop="1041" r_length="14" r_score="0.429"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-U323719" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1042</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20708" e_stop="21351"/>
          <exon e_start="21438" e_stop="21599"/>
          <exon e_start="21694" e_stop="21896"/>
          <exon e_start="22674" e_stop="22692"/>
          <exon e_start="23427" e_stop="23440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTGTCTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTTGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGTCTTCAAAGGTTTATTTTGCTACTGTTCGGCATATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTGGTGCGTTTTTTGGGGCACTCGAGTCTCTACATTCAAGTTACATGTAGTTTCCTTTTTTTTTTGACAGTGGTAACTGTTATATGTAGATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAGGTAGAGTTATTGCTCATTTCACTGGTGTGTTCATTTTAGTGTTTGATGAGATCATGTTGGCAGATATCAAGATTCAACACTTCACTTTTTGCAGGCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAACATTACTTATTCCACATGCTGGCTAGAACTAGCCAAATATTCATCACACCAACACACACATACTTATAATGTGTATCTACATAGTCACACATACATTATATTATTTATTATTCCACATGCTAGCTAGAACTAGCCAAATTATTCATCACACATACACACATTATTTCTTGAGAAGGTGACTTTCTATATCCTTGGTCATGGCAAGGATAACACCCAAGTGAAGGAGGGGTTCTGGGGTATCTTCAGTTTTCTTTTCGTAGTCAATTGTCCAAGTAGTCCACTGGCCATCACAAGATGTTGTAAAATTACAGTATTTATACAACTTCAATAAATCTCCTTCGATAACTTTCCATTTGATTAATTTCTGCTGAGGATCGGCAGCTTCAATTAAGTGCTTCATATACATTTCTTGTCCAGCTACAATCATATTATAAACAGAAAATACAAGAGATCGTTATCACTAGTTCAACTGTTCAATACCTTATGGAGAATTTAAACATTTACAAAATATTATTAGGTGAGAAAATTATATTTGTGATGTTATTACTGCTTTGATAAGTTTTTTTTTTAATTATTATTAAAGATTAGTGAGTGATGAGTAGTTATATTCCTTCATTGAAAAGCAAAAGGATTTACTTGTACTATATTTATGAAATTTTTACACCATCGAATATGTTTTCATGAAGATTTTTCTCTTAAAAATAAACTTTCTTATTAGTTATTGTCAAATATTTTTAAATAGAGAAAATTTATGCAAGTAAATCATATTAAGAGAGAGAGATAGGGTACAAAAAAAGGTGAGTTACCTTCGTTGTATTTCCAACTAACAATCGAACCAGTCTTAACGCTTTCACCTTCGTGAATTCCAAAATGGACGATATTTTTAGGACTTATATTGGGTACCTGATTAGTATTAATGTGAAAAATATCGAAAAATGAGCCTTCTCCACACTTCATCTCCACTGAAGCAATCAACTTACCTTTTAAACCCATATTTTTTATTTTTTTAAGAATAGCAATATGTTGTGAAAGAAAGTGGTGAGAAAATATTTAGAACTTGTAGTCTTTATATAGATTTTAATTAAATGTGAAATGCTAGCTAGTAAAAACATTATCCACCACATATCTACGAGTTAATACCATTTTACACCTTAACCTATTTTTTTTAAAAATAATTTGTTACCTAACCTATTTTTTTTAAAAATAATTTGTTACCTAACTTTTTACTTTCATAGTAAAATTACCTTTAAAAAGAACTGACAAGTTATCGTACATATTCATTTAAAGTGTTATATGTGAAACTTTCAATGTTGTACGATAAAATAAACAAATATTTTTATAAGAACAAATAATTGTCAATGGCGAAATTAGAAATTTTATTTAAAATATTCAAAACTGAATATATATAACATAATTATAAACTTATTTACTTAATAGAACTTTTTATAAATATAATATAATTTTCATTGTAGCACATGCCTAATGCAGAAAATAAATCATATCTATTTGTTTAATTTTCTTTTCCTAATAGGGGTAGGGTTAGGC</genome_strand>
        <mrna_strand>GCACGAG-CTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTTGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGTCTTCAAAGGTTTATTTTGCTACTGTTCGGCATATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG......................................................................................ATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAG..............................................................................................GCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGGGGGGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337872" ref_strand="-" ref_description="SGN-U337872        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>attttgtgtttgtctcaccacctgcagttgctccaccttaactacagctcagttgttattttttttctatcttctgagtccaagccaccttagaacttttttgatgtcttcttggcaaacatttcttataattttggaggtttcccttagcaattaacatctcaaattcttctgtggactttaggacctatttctgtagaagatgtgcttgtcgtggtgggagacgcttgtcccaatcacacctgcctcttttgtgctttatacccctgttaggagatgtgatgtgttctgcatttgttggttgtgttgcgaggtccaatctcgacaacaaaaagcaggctttcgaaggatgttgcagacgattgatacgtctttcttatgtaatagttggaaattccttattttctggcagataatgtgccatcgtagtattcttctgctatgattcttataagttattggttgatcagtttatatatgtttatgcttttgtgcatgatattagctctagtgacatatacataacatattcatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="20797" stop="22197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21097" g_stop="21351" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21352" i_stop="21517" i_length="166">
            <donor d_prob="0.278" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21518" g_stop="21599" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="338" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21600" i_stop="21693" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21694" g_stop="21901" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="546" r_length="208" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-U337872" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337872" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21097" e_stop="21351"/>
          <exon e_start="21518" e_stop="21599"/>
          <exon e_start="21694" e_stop="21901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTA-TTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTGGTGCGTTTTTTGGGGCACTCGAGTCTCTACATTCAAGTTACATGTAGTTTCCTTTTTTTTTTGACAGTGGTAACTGTTATATGTAGATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAGGTAGAGTTATTGCTCATTTCACTGGTGTGTTCATTTTAGTGTTTGATGAGATCATGTTGGCAGATATCAAGATTCAACACTTCACTTTTTGCAGGCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAACATTAC</genome_strand>
        <mrna_strand>ATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTTTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG......................................................................................................................................................................CTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAG..............................................................................................GCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314864" ref_strand="+" ref_description="SGN-U314864        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: AT5G28010.1 | Symbol: None | Bet v I allergen family protein, similar to Csf-2 (Cucumis sativus)(GI:5762258)(J Am Soc Hortic Sci 124, 136-139 (1999)); contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family | chr5:10024817-10025386 FORWARD | Aliases: F15F15.80, F15F15_80 (evalue: 1e-20, score=96.7) genbank/nr: gi|860903|emb|CAA55812.1| Sn-1 [Capsicum annuum] (evalue: 2e-50, score=201)">
      <seq>tattcttaaaaaaataaaaaatatgggtttaaaaggtaagttgattgcttcagtggagatgaagtgtggagaaggctcatttttcgatatttttcacattaatactaatcaggtacccaatataagtcctaaaaatatcgtccattttggaattcacgaaggtgaaagcgttaagactggttcgattgttagttggaaatacaacgaagctggacaagaaatgtatatgaagcacttaattgaagctgccgatcctcagcagaaattaatcaaatggaaagttatcgaaggagatttattgaagttgtataaatactgtaattttacaacatcttgtgatggccagtggactacttggacaattgactacgaaaagaaaactgaagataccccagaacccctccttcacttgggtgttatccttgccatgaccaaggatatagaaagtcaccttctcaagaaataatgtgtgtatgtgtgatgaataatttggctagttctagctagcatgtggaataataaataatataatgtatgtgtgactatgtagatacacattataagtatgtgtgtgttggtgtgatgaatatttggctagttctagccagcatgtggaataagtaatgtttttgatgaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="23210" stop="21583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22910" g_stop="22702" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22701" i_stop="22313" i_length="389">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22312" g_stop="21886" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="636" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="637" polyA_stop="662"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-U314864" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22910" e_stop="22702"/>
          <exon e_start="22312" e_stop="21886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTTAAAAAAATAAAAAATATGGGTTTAAAAGGTAAGTTGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAGGTAACTCACCTTTTTTTGTACCCTATCTCTCTCTCTTAATATGATTTACTTGCATAAATTTTCTCTATTTAAAAATATTTGACAATAACTAATAAGAAAGTTTATTTTTAAGAGAAAAATCTTCATGAAAACATATTCGATGGTGTAAAAATTTCATAAATATAGTACAAGTAAATCCTTTTGCTTTTCAATGAAGGAATATAACTACTCATCACTCACTAATCTTTAATAATAATTAAAAAAAAAACTTATCAAAGCAGTAATAACATCACAAATATAATTTTCTCACCTAATAATATTTTGTAAATGTTTAAATTCTCCATAAGGTATTGAACAGTTGAACTAGTGATAACGATCTCTTGTATTTTCTGTTTATAATATGATTGTAGCTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGA</genome_strand>
        <mrna_strand>TATTCTTAAAAAAATAAAAAATATGGGTTTAAAAGGTAAGTTGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326135" ref_strand="+" ref_description="SGN-U326135        Tomato 200607 #1 [4 ESTs aligned] genbank/nr: transposon(evalue: 1e-10, score=70.1)">
      <seq>aaaaaggaaacatatttcatttttcttctgaaattaaaaaccctattttgattttcttcagagatctgctgagaatcgttttccggcgacggcgacggctactctcaacgttaagttcctgaactgtgcaatcgtctttcaaagatggactatcattttctggcgaaatcgaaaactgaatgaggaactctgcttcttgcgagctcaacacacctggctccttgaattatctctcttatatttcgggtgatgacacctaataagagaccgaagaaacttgttgataatggacctgatgaagcctcgaaggttatgacacctaataagagacagaagcaacttgttgataatggacctaatgaagcctccaaggttatgacacctaataagagacagaagcaacttgttgataatggacctgacgaagcctccaaggttatggcacctaataatagacagaagcaacttgttgataatggacctgatgaagcctacttaatcgggatgcaaaagtttttggattatgcttttggaagaacagaagaactatatgaaatacgatgtccatgtgtcaaatgttgctacacaactgtaggaacacgcgaaacaatcgagtcacatttgaaagtttatggaataattcaaaagatactttaggggtgtctggaaatgattcaccaggtgctataagtgagggacgaggcaaagaacaggatgttagatctatgcgctctttgggggcatctggaaatgatgtaggatccttccatcaaattctctttactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="35170" stop="38115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35470" g_stop="35661" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35662" i_stop="37126" i_length="1465">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.596" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37127" g_stop="37180" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="246" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37181" i_stop="37272" i_length="92">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37273" g_stop="37815" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="787" r_length="541" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-U326135" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35470" e_stop="35661"/>
          <exon e_start="37127" e_stop="37180"/>
          <exon e_start="37273" e_stop="37815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGAAACATATTTCATTTTTCTTCTGAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTGGTAAGTTTTTGACATTATGAAAAAAAAAGCAGCAGCAGAATAATCTCTTCCGTGATTGTTGAAAATCCTCATTTTATATGAATTCATTGTGAAGGACGTTGATTTTAGTGTTTCTTACAGTACAGTAGTTTTTTCACCTTTTTTGAACAATAACACCTAGTTGATTGTTTAAGTGTGTTGCATTTTTTTAACTTTTGCTTTTTGAACTAGAAGAATTTGCTTGAGCTTGGTGATATTCTTTTACAGATTAATTGGTGAACTTGGTGGCTGTTTTACTATGAAATTTTTTATGCATGTAGTTGAAATTAGCTGACTTAGAATGATTTAGATTGTAGAAATGTTACTGGAGAGATTTTACTTATTTGTGGTTGAGTGAGTGAGTGATTGAGTTTTCTGTCTGTTGCTTGTATGTATATATTCCCATATTTAGAAACATAAAATATGTTGGTAGGTTTTTATCTTATATAATACTTTATTGGTTTTAAAGGTGGAGTAATGCATGTATTGTTGGAGTTTCTTCTTAATTATGAAAGTTGATGTACTAAAATGATTGTAGGGATACTTGTGTCTTCTCTGCATCAATTACTAAAGTAACCAATAAGTATATAGAGAGATCATGGTTGACATTAAGATTGTAAGATGAGTTACTTGAGATGAACAGAAGATGCTATCAATGTAATTGATTGACCTATGTTAGCTGTCACTTATGTCTCTGTACACAATGACAATGTTTCCAAAATACTTGGTCATCACTGCTGAAATCATTTGCACATGAAGCAGATAAAGTCTGTCCTACGTGTAGTGTGATTTGGGGATTGATTTTTTTGTGTATGGTCAGATATCTAAAGTTGTCTTGGATGACTTTGCTTTGGTTCATTCTGGTCTGATGGCTCCAACTTGATCTTATTGTGATGTCTTCTACCCTCTTTAAAGTTGCTTTGGTTACAAAGTACAAGTTCGTGTTTGCAGAGGTGAAGATTTTCTCCATCAATGGTCTGTAGATTAAAGGGATTTGTACCACCCCATTTAGAGGCGGAACCAGTGTTTTTAGTTTATGCATTCTGGATAATTATCCTTTTTTATTTGTTGTGTTCTGCCAGTTCTGGATAGATTATTTGTAAATATTAAATGAAAATTTTAATACAAATACAAAATTTAGTTTAAGTTACTGGGTTATGCTGAACCCGAAGCTTTAATGGTGGCTCCGCTCCTAACCCATTGTAATAATTACCTCGTTAGCTCTAGTTTGTGAAATATCCTTAGTCAATTATTATAAATCTTAACCTATTTTCTCAAATATCTCAACTTCTCGTGTGTATAGAAACTTAATGTTTACGATTTATTCAGTTTTTGTAGTAATTTACATATATACATTAGTTTTAGTTTCTGTAACGTCATTAGTAAATAGTTGTTAGCCTAGTTCATTTTCTCGAAATCTCAGCTTCTTGTGGCTAAACTTTTGTAGCTTCTTGCGAGCTCAACACACCTGGCTCCTTGAATTATCTCTCTTATATTTCGGGTATATAATTTTTCTTAGAAGTTATATGCATCTTAGTACTTTCCTTTAGTATGCTTTATATTTTTCTAATTTAATCTTTATGCATCCCCAAGGTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACGAAGCCTCCAAGGTTATGGCACCTAATAATAGACAGAAGCAACTTGTTGATAATGGACCTGATGAAGCCTACTTAATCGGGATGCAAAAGTTTTTGGATTATGCTTTTGGAAGAACAGAAGAACTATATGAAATACGATGTCCATGTGTCAAATGTTGCTACACAACTGTAGGAACACGCGAAACAATCGAGTCACATTTGAAAGTTTATGGAATAATTCAAAAGTATACTTTAGGGGTGTCTGGAAATGATTCACCAGGTGCTATAAGTGAGGGACGAGGCAAAGAACAGGATGTTAGATCTATGCGCTCTTTGGGGGCATCTGGAAATGATGTAGGATCCTTCCATCAAAATTCTCTTTACTCT</genome_strand>
        <mrna_strand>AAAAAGGAAACATATTTCATTTTTCTTCTGAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGCGAGCTCAACACACCTGGCTCCTTGAATTATCTCTCTTATATTTCGG............................................................................................GTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACGAAGCCTCCAAGGTTATGGCACCTAATAATAGACAGAAGCAACTTGTTGATAATGGACCTGATGAAGCCTACTTAATCGGGATGCAAAAGTTTTTGGATTATGCTTTTGGAAGAACAGAAGAACTATATGAAATACGATGTCCATGTGTCAAATGTTGCTACACAACTGTAGGAACACGCGAAACAATCGAGTCACATTTGAAAGTTTATGGAATAATTCAAAAG-ATACTTTAGGGGTGTCTGGAAATGATTCACCAGGTGCTATAAGTGAGGGACGAGGCAAAGAACAGGATGTTAGATCTATGCGCTCTTTGGGGGCATCTGGAAATGATGTAGGATCCTTCCATC-AAATTCTCTTTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331960" ref_strand="+" ref_description="SGN-U331960        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: gi|47824994|gb|AAT38766.1| putative polyprotein [Solanum demissum] (evalue: 5e-40, score=165)">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="51062" stop="50068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50762" g_stop="50368" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-U331960" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50762" e_stop="50368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGCAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCAATGGAGTTAATATTGTTGAAGAAGCTTCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAAAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323496" ref_strand="+" ref_description="SGN-U323496        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | homeobox-leucine zipper protein 5 (HAT5) / HD-ZIP protein 5 / HD-ZIP protein (HB-1), identical to homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1) GB:Q02283 (Arabidopsis thaliana) | chr3:182567-184410 REVERSE | Aliases: F4P13.2, F4P13_2(evalue: 2e-35, score=146) genbank/nr: gi|15148918|gb|AAK84886.1| homeodomain leucine zipper protein HDZ2 [Phaseolus vulgaris](evalue: 5e-56, score=221)">
      <seq>ttccttgtctacttctacttctttttctcaatattaaatgtgatcctcatttatagtactcatcacaaactttcttagtaacaattcaatagtccaatttttcctattcttgatcctcctctcaactccaaataccaaaaaaataaaatttagaggataaaaaatggaggtagcaagagttcatgaaggttctaacaatggctttatacttccaaatgaaattcttcctcctacttctaattggatatctaattcttcctccattttccatggctctgtatcgatggtaaatttcgatcaagatcgagtacagaagtctaaaaagaggtcatttttagcacaacttgatcaagacgacagtagtagcaatgatgacaattacaattatcatcaccaaagtgaaaagaaaagacgattgttaccaaaacaagttgagtatcttgagaaaagtttcgaggtagaaaacaagcttgaacctgaaaggaaagtacaattagctaaagaaactggattgcagcctagacaagttgctatttggtttcaaaatcgacgagcacgatgcaaaacgaaacaaattgagaaggattatgatgtccttaaagctagctttgatgaattgaagactcaatatgattgtctcttcaaagagaatggaagcttgagaaatgaggtacatttactcaaagagaagttgatcaacagagtaaaagggaaggaaattttagaatttattagtccacttgatcatgtagaacctcaaaatccttctattggagttgattcaaatttagcaatggtgaagtgcaagcaagaagatgcaaaaagtgatgttcttgattcggacagtccgcgttttactgacggagattacacttcatatttggagcctgctgattcttcaaatgtatttcagacagaacactctaatttttctcgagaaatgacacattatgcttgccaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="80440" stop="82877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80740" g_stop="81011" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81012" i_stop="81461" i_length="450">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81462" g_stop="81859" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="670" r_length="398" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81860" i_stop="82281" i_length="422">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82282" g_stop="82577" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="965" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-U323496" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>966</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80740" e_stop="81011"/>
          <exon e_start="81462" e_stop="81859"/>
          <exon e_start="82282" e_stop="82577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATGGTAAGGGTTCTTCAACGAAAAATTATATTATTTATACATGGTAAAAATTAAATATTGTTTATGTATGTATAGTTGTTGAACTCCTTTCAGCTAGTTTCAGCTAGTTCGTGTGTTTACTTTTCACATACTTTCAACTGAGTTAAGGAAAATTCTGATTTCACCACTGATGTGCGGGTGATCCTTTGATAATCAAGAGATTATGATCATCAATTATAGACCTAAGGTTGTAAATATTGACAAGGAAATGATTGAATTATCTGTTCAATTTTTAGATGCCTTGTGCCCTACTTTTGTTTTCTCATGTTAATATAAAAAGCTTAGTAACTCAGTTGATTGACTAGCTGAACTTTTCTTCTAATTGGTGAGTGTTTGATTTTCCACCCAATAATCTCGTCGTGCATTTATGAAATTGAAATGAACCAAGATTTGTGAACTTTTGCTCTGTTTCAGGCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAGGTAAATTTAGTCAAGAAATCATTTATACATTGTTTGGATATATCAATAATGATACTTATTAGATGTGTACAAAGGTAGATTTTTTGAAAACATTTATGTTACAAGATATCTGTTTAGCCGTGAAATTTGAAATGTGATTGGGAGTTCTACACACAAAAATTTCAAATTTTGTCCAAGTAAATGTAAACCCCAACTCCTAACTTAAGTTCAAAAACCATAACTTGTGCGCATTTGACCATGTTTTATTGATTTTGGTCAAACATGTCTTTCAGAGTTCAAACTTTGTAAAAATTGAAGTTTTTTTACGATCAAACGTCTTAAATTTTAAAGTTTCAACTTTAAAATCTACTGTCTAACATGTGCAAAATCGCAAAAATATGATCTAGGTCTTCACTTATTTTTTCCCCTTTTGTGTTCAACAGGTACATTTACTCAAAGAGAAGTTGATCAACAGAGTAAAAGGGAAGGAAATTTTAGAATTTATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGATTCAAATTTAGCAATGGTGAAGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCGGACAGTCCGCGTTTTACTGACGGAGATTACACTTCATATTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCGAGAAAATGACACATTATGCTTCCCAAAACT</genome_strand>
        <mrna_strand>TTCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATTTACTCAAAGAGAAGTTGATCAACAGAGTAAAAGGGAAGGAAATTTTAGAATTTATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGATTCAAATTTAGCAATGGTGAAGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCGGACAGTCCGCGTTTTACTGACGGAGATTACACTTCATATTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCGAG-AAATGACACATTATGCTTGCCAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327608" ref_strand="+" ref_description="SGN-U327608        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G08910.1 | Symbol: None | DNAJ heat shock protein, putative, similar to SP:P25685 DnaJ homolog subfamily B member 1 (Heat shock 40 kDa protein 1) {Homo sapiens}; contains Pfam profile PF00226: DnaJ domain | chr3:2710160-2711898 REVERSE | Aliases: T16O11.15 (evalue: 8e-40, score=161) genbank/nr: gi|34811736|gb|AAQ82701.1| potyviral capsid protein interacting protein 1 [Nicotiana tabacum] (evalue: 3e-65, score=252)">
      <seq>tttctctaccatacgcattgattcgcctagacgaccggccaactcaccggagttttccccgtcgagtacgggtcaacgacttccttttctccagatttaacaaactttccagaaatttctcgagaacagtctgttatttatttttataatatatatatacaaacacatatattcctgcttcggtttcatcaacgatacagagaaaaaaagcacagtgaaagagaagagaagaagatatgagtgttgattactataagacactgaaagtgtcacgtaatgcaagtgaagaagatttgaagaaatcgtataagagattggccatgaaatggcatccggataagaatagtgagaataagaaggaagctgaagcgaaattcaagcagatatctgaggcttatgatgtgctgagtgatcctcagaagcgtcagatctatgatatatacggtgatgaggcactgaaatctggtcaattcgatccatcctcacctagtgatagaagaggatttaagttcaattcgcgtgatgcggaagatattttcgcggaattttttggtggatcggatgggtatagtaggagtactggtggtactgtacggattaggaaagctgcgccggtggagaacaagttgccgtgtaccttggaggagttatacaagggctctaagaggaaaatgaagatttcaaggattgttcttgatggcgctgggtaagtaaataccttacattatacaaacaccagctaatatttctgaataacatcctctatccatatttgctattagaatctgttatctagttttctcaataagaaatttacattactttgcggaatgaattacatctggcctattgacggggataattcgagttgatagtagtgatttgatcttttgtgtggtgaatttgacagaacattgcctagtaaatcatgtccatcaaggttggttatagttttcatatgaatctggatccttaggaagctactcccatctctcaaccacttgaaactgtgcctttgagattatcccacagtaatgaatcagaactgttcatcatatgggggttatgcatgaattatatagaatgagtgaatgatattggtgactcgagggaaaattcttctttgattatcattggtaaaagtacatttaacttaaaattatgtgtattagttgggatagcaacgatgcacgaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="94798" stop="93000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94498" g_stop="93300" g_length="1199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1199" r_length="1199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-U327608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94498" e_stop="93300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTACCATACGCATTGATTCGCCTAGACGACCGGCCAACTCACCGGAGTTTTCCCCGTCGAGTACGGGTCAACGACTTCCTTTTCTCCAGATTTAACAAACTTTCCAGAAATTTCTCGAGAACAGTCTGTTATTTATTTTTATAATATATATATACAAACACATATATTCCTGCTTCGGTTTCATCAACGATACAGAGAAAAAAAGCACAGTGAAAGAGAAGAGAAGAAGATATGAGTGTTGATTACTATAAGACACTGAAAGTGTCACGTAATGCAAGTGAAGAAGATTTGAAGAAATCGTATAAGAGATTGGCCATGAAATGGCATCCGGATAAGAATAGTGAGAATAAGAAGGAAGCTGAAGCGAAATTCAAGCAGATATCTGAGGCTTATGATGTGCTGAGTGATCCTCAGAAGCGTCAGATCTATGATATATACGGTGATGAGGCACTGAAATCTGGTCAATTCGATCCATCCTCACCTAGTGATAGAAGAGGATTTAAGTTCAATTCGCGTGATGCGGAAGATATTTTCGCGGAATTTTTTGGTGGATCGGATGGGTATAGTAGGAGTACTGGTGGTACTGTACGGATTAGGAAAGCTGCGCCGGTGGAGAACAAGTTGCCGTGTACCTTGGAGGAGTTATACAAGGGCTCTAAGAGGAAAATGAAGATTTCAAGGATTGTTCTTGATGGCGCTGGGTAAGTAAATACCTTACATTATACAAACACCAGCTAATATTTCTGAATAACATCCTCTATCCATATTTGCTATTAGAATCTGTTATCTAGTTTTCTCAATAAGAAATTTACATTACTTTGCGGAATGAATTACATCTGGCCTATTGACGGGGATAATTCGAGTTGATAGTAGTGATTTGATCTTTTGTGTGGTGAATTTGACAGAACATTGCCTAGTAAATCATGTCCATCAAGGTTGGTTATAGTTTTCATATGAATCTGGATCCTTAGGAAGCTACTCCCATCTCTCAACCACTTGAAACTGTGCCTTTGAGATTATCCCACAGTAATGAATCAGAACTGTTCATCATATGGGGGTTATGCATGAATTATATAGAATGAGTGAATGATATTGGTGACTCGAGGGAAAATTCTTCTTTGATTATCATTGGTAAAAGTACATTTAACTTAAAATTATGTGTATTAGTTGGGATAGCAACGATGCACGAATATA</genome_strand>
        <mrna_strand>TTTCTCTACCATACGCATTGATTCGCCTAGACGACCGGCCAACTCACCGGAGTTTTCCCCGTCGAGTACGGGTCAACGACTTCCTTTTCTCCAGATTTAACAAACTTTCCAGAAATTTCTCGAGAACAGTCTGTTATTTATTTTTATAATATATATATACAAACACATATATTCCTGCTTCGGTTTCATCAACGATACAGAGAAAAAAAGCACAGTGAAAGAGAAGAGAAGAAGATATGAGTGTTGATTACTATAAGACACTGAAAGTGTCACGTAATGCAAGTGAAGAAGATTTGAAGAAATCGTATAAGAGATTGGCCATGAAATGGCATCCGGATAAGAATAGTGAGAATAAGAAGGAAGCTGAAGCGAAATTCAAGCAGATATCTGAGGCTTATGATGTGCTGAGTGATCCTCAGAAGCGTCAGATCTATGATATATACGGTGATGAGGCACTGAAATCTGGTCAATTCGATCCATCCTCACCTAGTGATAGAAGAGGATTTAAGTTCAATTCGCGTGATGCGGAAGATATTTTCGCGGAATTTTTTGGTGGATCGGATGGGTATAGTAGGAGTACTGGTGGTACTGTACGGATTAGGAAAGCTGCGCCGGTGGAGAACAAGTTGCCGTGTACCTTGGAGGAGTTATACAAGGGCTCTAAGAGGAAAATGAAGATTTCAAGGATTGTTCTTGATGGCGCTGGGTAAGTAAATACCTTACATTATACAAACACCAGCTAATATTTCTGAATAACATCCTCTATCCATATTTGCTATTAGAATCTGTTATCTAGTTTTCTCAATAAGAAATTTACATTACTTTGCGGAATGAATTACATCTGGCCTATTGACGGGGATAATTCGAGTTGATAGTAGTGATTTGATCTTTTGTGTGGTGAATTTGACAGAACATTGCCTAGTAAATCATGTCCATCAAGGTTGGTTATAGTTTTCATATGAATCTGGATCCTTAGGAAGCTACTCCCATCTCTCAACCACTTGAAACTGTGCCTTTGAGATTATCCCACAGTAATGAATCAGAACTGTTCATCATATGGGGGTTATGCATGAATTATATAGAATGAGTGAATGATATTGGTGACTCGAGGGAAAATTCTTCTTTGATTATCATTGGTAAAAGTACATTTAACTTAAAATTATGTGTATTAGTTGGGATAGCAACGATGCACGAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345080" ref_strand="+" ref_description="SGN-U345080        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | sporulation protein-related, isoform contains non-consensus AT-donor acceptor site at intron 6; similar to Stage III sporulation protein AA. (Swiss-Prot:Q01367) (Bacillus subtilis); similar to SpoIIIAA (GI:1303904) (Bacillus subtilis); similar to stage III sporulation protein AA (GI:18145497) (Clostridium perfringens str. 13) | chr1:12074090-12076084 FORWARD | Aliases: T16O9.17, T16O9_17(evalue: 3e-65, score=245) genbank/nr: gi|77553351|gb|ABA96147.1| expressed protein [Oryza sativa (japonica cultivar-group)] (evalue: 2e-66, score=255)">
      <seq>tttattgatgtctgtagttactagtgttattactccagccataaaaagcaaatcttgttgtttcatgagtttattgcattatccaccattgatgactgctagctaccgttgttttcgtgcccgaagtaggctttcgtgctgtaatagtcacgctgatgatgatatgcgtgccctctttcagattctgccatgtgacttacgggacacccttttgtgtgaccccagccaagatcaactagtagaggtgattttagatttaggctgtttgccacaagcacattacataaatgattctgggaggcgttaccttcgagatactgaggtctctatggaagaaatacaatgtgtcctcaaggaaattggacaatttggaggagataacagagctggcattgagggtactttgcatcgcatttccgcaattaggaataggaagggtgaagtcattggtttgacttgccgagttggcagggccagaggacagattgacatggtgcgggacttgcttgattttggtgaaagcatcttgtttgttggacgacctggtgttggtaaaactacggttgtgcgagagatatctcgtgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="94716" stop="98558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95016" g_stop="95196" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95197" i_stop="96852" i_length="1656">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96853" g_stop="96915" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="244" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="97471" i_length="556">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97472" g_stop="97549" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="322" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97550" i_stop="97817" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97818" g_stop="98035" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="540" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98036" i_stop="98210" i_length="175">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98211" g_stop="98258" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="588" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-U345080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95016" e_stop="95196"/>
          <exon e_start="96853" e_stop="96915"/>
          <exon e_start="97472" e_stop="97549"/>
          <exon e_start="97818" e_stop="98035"/>
          <exon e_start="98211" e_stop="98258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGATGTCTGTAGTTACTAGTGTTATTACTCCAGCCATAAAAAGCAAATCTTGTTGTTTCATGAGTTTATTGCATTATCCACCATTGATGACTGCTAGCTACCGTTGTTTTCGTGCCCGAAGTAGGCTTTCGTGCTGTAATAGTCACGCTGATGATGATATGCGTGCCCTCTTTCAGGTACTTTTCCTCTTTAAGTTTTCTGTTTTTTTGTGTGTTCTGGTCATTTGCATATACATTTTAGGGATTTACAAGTAGTAGAAGGAAATGAGCTGGTATAGTCCAAATAGAGCGGAATGGATGTAGAGGATTTTCATGTAGCTTACCTGAAATACTTAGGGATTGAGGTATAATTAGTAAGTTCATTGTGTCTAAAGTTCTAAAGTTCCAATCTTTTACCCCTTTTTAGGATTGGTAGTGGAGGGAACAAGTTTCAAGTTGTAGTTCAGGATATTTGACACTCACATTTGGGTGTATATAATGTGAAACTTGTTAGAACTTAGAAGTTAGGGTTAGGATGTGTATTGAAAATGTGCTTATGTAAAGATCCTAGAAATAGAGGAACAAAGGGAAAAAAGACGATGTTTTTTACATGTCAGCTTGATTTTGAAGTTTAAGGGGAAGTTGAGGGAGAAATCATTCATTTAATTGATGCAAGTTAGCTTCTTGATAAGCTATTTTAGATGGTCATATCTTGATAACCATAAAGGCTTACCAACTAAGTTTGGATTGAGATTTAGTGTTATTGGGTATACTTAAAGAATTTGATGTTAGTGTAGGAATAAGTGGGACATTTAGAGAACTCCCAATTTGAAGAACCCCTAATTTGTACCTAAAGATGAATTAATTTGAATGAAGTTGGCCCAAATGGAGCGGAATGGATAGTAATGATTTGTGTAGCCAACTCCTACTAGTTTATCAAGGTGTAGCAGAAGTGGTGGTTGTACTGGCACTACTTGTTGCAGGGCTTGTCGTGACACTGAAACTTGGAAAAGCGGTGGAGTAGCTAAGATTTCTATATTTCCTATGAAGTTTGTAGCACTGGTTCCCTGGGAAAATCTGAGGAAGTGAACTTTTCTTATATCAAACACAAGTCTACAAGACAGTTAATAATGGGAAATTAGGAATAATAAATAAACATGGTATAGTGTGTGCCAAAAATGGGAGAATGGAACAGAAGAGGAGGTACGGAAGCTCAAAAAATTAGAAGGAGATGTCCCAGGCGGCATATGGTGGACTATCTGGAGGGAAAGGAATTTAAGACGTTTTGAAGGAAAAAACAGCCGAATCCAGAAGATAAAGCTTGATTGCATTCTGCTTTTGGATATTTGGTGTAAACAGGAGTACATAAATGACTCTGAGATCATATTACAATTCCTGGAGTCTGTATAGTTATAGTAGAATTTTTGTGTAGATTTTTAGCTTTCTTTCCTTGTAACTATGGCCTCCACAGGCTCTTTTGATATCAATATAAATCTGTTACAATCTCAAAAAAAGAAGAAGGGAGAGTGGAGATAAAACGAGGTAACTGCTTGTTCCAGGAGTGTTGCACAAGAACCATTTTACCTCCCTTAATTATCAGTATAGACTATGGCTTTTTGTTTGTATTTCATTCTTGAGGGCTATGTACATTACATTTGCAAGTTTGTGTTTTACATTTCTTTGTAATCTATGCCCAAACAAAAGGTAAGGATAGCTGGGGTTGGAGGTTCATTTAGAATTGTGATTTTGATTTCTTGCATCAGCTGAATTATTGAAATATTTTCTTTATGTAATTGAAGATCATGCTTTAAAATGAACTTAAAATGATTTATTTTTCTTTTCTTCTTTTTGCAGATTCTGCCATGTGACTTACGGGACACCCTTTTGTGTGACCCCAGCCAAGATCAACTAGTAGAGGTATCTATATCTAACAATGTGAACACTTCCTTTGACAAAGGGATGTAGTATGTGTTTTTTCACCAGATTTCTCATCGATTTTTTTAGCTTCACTCTCTGTATCTCGTAAATAGCAATATGTGATGTTTGCCTTAAATCTTACTGTCAGCTAATAAAATGTTCTTGATTTGCTAACGTTATAGTTTACCATCTTAAATTTGCCTACAAAAAGCGGTATCCTTTGTTTTGCTAATATTCTGGTGTCAAAGAGGTCTCTTGCTGGAAAAAGTATGATATGTGTTCTGGAAATTGTCATTTTATGAATCTGACTAAATTTATCTGCTTACCACAAACATGTTTCAGCTGATATGCCTTTCACGAGATGACAGGATGAGTTTCATATTATCACACGGTTACCAGTAATGTTTATATGGCTTGATAATTATTTGAGATCCGTGTTATTCTCATAGGTTACCAGTATTCAGTAATGCTTATGCATGATAATAACTATGCTGTGTGTATTATTATGCTATGATATTACTATACTGACCAAAAAGATTGTATGATATTTTTGTAGGTGATTTTAGATTTAGGCTGTTTGCCACAAGCACATTACATAAATGATTCTGGGAGGCGTTACCTTCGAGATACTGAGGTAAACACTAAAGGTATTGAAATTACCTACTTTATGAAAATATTGAAGTATATACTGTCACGATAATGACTAGTGTTGTTGCTTAGAAGCACCAGAAGCTTATTGTAGTTTACTAGGAAGTGAATTAGAGAAAAGGGAAGAAATTTGTGGTTTTGAAGGAATATAAAGAGCAAAAACTGGACACCAGAAGATTATTTGAAGAGCTTAATTATATCTGCTTCTTCTTTTTTTGAAATGTGAAGTTATATCTGTTTCTTTTGTTAAGCAGGTCTCTATGGAAGAAATACAATGTGTCCTCAAGGAAATTGGACAATTTGGAGGAGATAACAGAGCTGGCATTGAGGGTACTTTGCATCGCATTTCCGCAATTAGGAATAGGAAGGGTGAAGTCATTGGTTTGACTTGCCGAGTTGGCAGGGCCAGAGGACAGATTGACATGGTGCGGGACTTGCTTGATTTTGGTGAAAGCATCTTGTTTGTTGGACGGTAAGTGAGTTACATATAGATGTAAATCATATCTGACCCGCCTGCGGTGGCCTCAATTTTTTCTAATGTGTTCTACTAAGCTGATAACCATCAAGCTTTATCACAATTGACTATACCTTGCTATCCTGCCAAGTTATTCTGTCTCTTTTTGATTTGTCTCTCTTTAATTTAACAGACCTGGTGTTGGTAAAACTACGGTTGTGCGAGAGATATCTCGTGTCTT</genome_strand>
        <mrna_strand>TTTATTGATGTCTGTAGTTACTAGTGTTATTACTCCAGCCATAAAAAGCAAATCTTGTTGTTTCATGAGTTTATTGCATTATCCACCATTGATGACTGCTAGCTACCGTTGTTTTCGTGCCCGAAGTAGGCTTTCGTGCTGTAATAGTCACGCTGATGATGATATGCGTGCCCTCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGCCATGTGACTTACGGGACACCCTTTTGTGTGACCCCAGCCAAGATCAACTAGTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTTTAGATTTAGGCTGTTTGCCACAAGCACATTACATAAATGATTCTGGGAGGCGTTACCTTCGAGATACTGAG............................................................................................................................................................................................................................................................................GTCTCTATGGAAGAAATACAATGTGTCCTCAAGGAAATTGGACAATTTGGAGGAGATAACAGAGCTGGCATTGAGGGTACTTTGCATCGCATTTCCGCAATTAGGAATAGGAAGGGTGAAGTCATTGGTTTGACTTGCCGAGTTGGCAGGGCCAGAGGACAGATTGACATGGTGCGGGACTTGCTTGATTTTGGTGAAAGCATCTTGTTTGTTGGACG...............................................................................................................................................................................ACCTGGTGTTGGTAAAACTACGGTTGTGCGAGAGATATCTCGTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332123" ref_strand="+" ref_description="SGN-U332123        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>agaactccgcaattacaggttgtgattgagagatggagaacaaaagcctaaatacaattaacttctgctactgctctactggagaaaaatgtatgtgtacatttgaaaacttcatatggagcttgcaatgtgatggaaatggatgttgaaaatctttgcggaggttgaaattcatcttttcacaaagttggccttctaacaagcatagtaagtactacgttttcactgattttcatactttgggtaagtgagatgaaaactctcttcttcctttctttgtcatttcacttaattttgttatataagttgatcatctacatttatctttctgtcattaaattatttatttcgtttactttgtaaaaacttagtttttcatgtttcatatcatacctagctagctacaatctttgacaaaaaaaaatatttatataattcaaatctaagtattatgttgattacctaatttttaagtgcattcacctaagtaccatctcaaagtgtacaaaaaaaaaccatccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="100802" stop="102719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101102" g_stop="101182" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101183" i_stop="101977" i_length="795">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101978" g_stop="102419" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="523" r_length="442" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-U332123" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101102" e_stop="101182"/>
          <exon e_start="101978" e_stop="102419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTCCGCAATTACAGGTTGTGATTGAGAGATGGAGAACAAAAGCCTAAATACAATTAACTTCTGCTACTGCTCTACTGGTAAACATATTGATCATACATACGCCAACATTTCTTTCTCTTTTATTGGTTCAACGTTTCTTTCTGTTGCGTGAATAGAGAGAAAATATCCAATGCTTCCCTCTTTCTTCTAGCTACCCTCGAGTCTTGATACAGAATCCTATTCTTGACTACTGTGATCTTGAGTTGGTTTACTTGCCATAAACTTAACTGAGATTTCAGCTTATAGGATCTATCACATCATATATCATATATATTACTATAAGTGGGAACAAAAAAAATTAGAAGTTGAACTACGATTTTACCTTTACTATAAATTAAAGAAATATTAGACAAAAGTTAAATTACCGTTTTACCCCTACATTAAATTAAAATGTTATATATTATTAATAAATTAAATATTAAATAATAACTATATCTTATTGTTCTATCCGTTTTTGGCTTTTGATTTTTTTCCTAATCTAAATTAATCTCCCATTACCTATAGATGTTCACTTAATAATAATTACTCTCCCTTACTTATAGATGTTCACTTATATTATTAATTAAAGAGGGTGAATGAAGAGTTGCACGGTTTTAATTATGACTTTATGAGAGAAATGTTCACTTATTGCTCCAACAATAATAATGATTAATAAAAAGAATGAAAAGTTGGAGTAATTTAGTGTCAAAGTCAATATTATATTTTTGTAGCAAAAAGGTCTCCCGATGGTTATATAGCTAAAATGCATGGAAGTTGAACAAATTTTTCATTTCACTCTAAATACATTAGTGGATCAATACTCACTTTCATTATGTTCTTTTATTTTTTTACAGGAGAAAAATGTATGTGTACATTTGAAAACTTCATATGGAGCTTGCAATGTGATGGAAATGGATGTTGAAAATCTTTGCGGAGGTTGAAATTCATCTTTTCACAAAGTTGGCCTTCTAACAAGCATAGTAAGTACTACGTTTTCACTGATTTTCATACTTTGGGTAAGTGAGATGAAAACTCTCTTCTTCCTTTCTTTGTCATTTCACTTAATTTTGTTATATAAGTTGATCATCTACATTTATCTTTCTGTCATTAAATTATTTATTTCGTTTACTTTGTAAAAACTTAGTTTTTCATGTTTCATATCATACCTAGCTAGCTACAATCTTTGACAAAAAAAAATATTTAGATAATTCAGATCTAAGTATTATGTTGATTACCTAATTTTTAAGTGCATTCACCTAAGTACCATCTCAAAGTGTACAAAAAAAAAACATCCAC</genome_strand>
        <mrna_strand>AGAACTCCGCAATTACAGGTTGTGATTGAGAGATGGAGAACAAAAGCCTAAATACAATTAACTTCTGCTACTGCTCTACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAATGTATGTGTACATTTGAAAACTTCATATGGAGCTTGCAATGTGATGGAAATGGATGTTGAAAATCTTTGCGGAGGTTGAAATTCATCTTTTCACAAAGTTGGCCTTCTAACAAGCATAGTAAGTACTACGTTTTCACTGATTTTCATACTTTGGGTAAGTGAGATGAAAACTCTCTTCTTCCTTTCTTTGTCATTTCACTTAATTTTGTTATATAAGTTGATCATCTACATTTATCTTTCTGTCATTAAATTATTTATTTCGTTTACTTTGTAAAAACTTAGTTTTTCATGTTTCATATCATACCTAGCTAGCTACAATCTTTGACAAAAAAAAATATTTATATAATTCAAATCTAAGTATTATGTTGATTACCTAATTTTTAAGTGCATTCACCTAAGTACCATCTCAAAGTGTACAAAAAAAAACCATCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329342" ref_strand="+" ref_description="SGN-U329342        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tttgcatcatccacaggtacatgatcaaaaccagcatgttttgagggctttgagaaaccaaaaatgtttcgaaaacggtgaagttgaaggaactactgacctacatgactagaagatacatactgagtatcccaacaaaaaggtagcaaaagaaattctatgatcatccaaacattgtaatggatcaacagatacgttcttgtgagttcaattgaatccatttggtctctctttttatgttacaaaatatataagtatcagatattagtacaagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="102810" stop="103686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103110" g_stop="103386" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-U329342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103110" e_stop="103386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATCATCCACAGGTACATGATCAAAACCAGCATGTTTTGAGGGCTTTGAGAAACCAAAAATGTTTCGAAAACGGTGAAGTTGAAGGAACTACTGACCTACATGACTAGAAGATACATACTGAGTATCCCAACAAAAAGGTAGCAAAAGAAATTCTATGATCATCCAAACATTGTAATGGATCAACAGATACGTTCTTGTGAGTTCAATTGAATCCATTTGGTCTCTCTTTTTATGTTACAAAATATATAAGTATCAGATATTAGTACAAGTTA</genome_strand>
        <mrna_strand>TTTGCATCATCCACAGGTACATGATCAAAACCAGCATGTTTTGAGGGCTTTGAGAAACCAAAAATGTTTCGAAAACGGTGAAGTTGAAGGAACTACTGACCTACATGACTAGAAGATACATACTGAGTATCCCAACAAAAAGGTAGCAAAAGAAATTCTATGATCATCCAAACATTGTAATGGATCAACAGATACGTTCTTGTGAGTTCAATTGAATCCATTTGGTCTCTCTTTTTATGTTACAAAATATATAAGTATCAGATATTAGTACAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335620" ref_strand="-" ref_description="SGN-U335620        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to ESTs gb:N96021 and gb:N96863 | chr1:3416686-3419640 REVERSE | Aliases: F14N23.31, F14N23_31(evalue: 7e-67, score=250) genbank/nr: gi|50917887|ref|XP_469340.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|28273423|gb|AAO38509.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 3e-65, score=251)">
      <seq>gaagtggaaaaagtgaaggcttttccaatggatggtactgttccgtttagggaaaggttaaagatattaggtcgtgtagcaaatatggaggaccttcggttaagtgcagcagagaggaagctgatgcaggcatacaatgaaaaacctgttctttcacgtcctcaacatgagttctataagggagaaaattattttgagattgatattgatatgcacagattcagttacatctctagaaagggttgcgaaacattcctagataggctaaagctatgctccttggatgtaggcctcacaattcagggtaacaaaattgaagaattgccggagcagatcttatgttgtatacgattaaatgaaatcgactatgtgaattatcagcaactcggggctaataatgaaaccccttgaataggtgcactagcagtgtattcccccggatatggcaaataagtgaagaaattattgttagctagttgtgtccctcccttttacctcaactgtcaaatctctgagaagcaaatggcttatcgagagagtagtagatatttgaatctatggacaaggatgagaaaatagtcgagtggtgttctttgtttcaatgtttcatccaaccgcagtcgatctgtttttatttggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="113958" stop="112471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113658" g_stop="113479" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113307" g_stop="113185" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="303" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113184" i_stop="113109" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113108" g_stop="112772" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="639" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="656"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-U335620" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335620" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113658" e_stop="113479"/>
          <exon e_start="113307" e_stop="113185"/>
          <exon e_start="113108" e_stop="112772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCATATTGAAGGAAATATGTTCCAAGTTCTTATTACGTTGCTAATGATGTCTTTGTAGGGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAGGTGAGTATCTGTATGTGACCTCAAATTCTCTTCTTTCCAAATTCAGCTGCAAGTAATTATTCACTTTTCAAATCAGGGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGGACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTCAATGTTTCATCAAACCGCAGTCGATCTGTTTTTATTTTGG</genome_strand>
        <mrna_strand>GAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG...........................................................................................................................................................................GGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAG............................................................................GGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCCCCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGGACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTCAATGTTTCATCCAACCGCAGTCGATCTGTTTTTA-TTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316353" ref_strand="+" ref_description="SGN-U316353        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to ESTs gb:N96021 and gb:N96863 | chr1:3416686-3419640 REVERSE | Aliases: F14N23.31, F14N23_31(evalue: 7e-142, score=302) genbank/nr: gi|4914345|gb|AAD32893.1| F14N23.31 [Arabidopsis thaliana] (evalue: 2e-112, score=302)">
      <seq>tttcttcttctctgaaaatcatgtaacataacttcaaaaatatatcctctattttgtttttttgagataattaatggcttctccacctcttcaagcttcaaaattcctcaaaaatcaatagatttttctctctctaaaaaaaaatgatatagatttttttttgttgttgttgttgatatgatatagtagttgttgagaagcatatgattctgctgaaatgggagcatgtgtatcgcgtccagatagttgtgttggaggtaaattgaaaggttcaaataagtttaggaaaaaaagggggggaagaagaagaaggaagaaatctaactcacttcataaaattgatgaggcgtttcctttggataactataatccaacatttcagggacggattgaggaggcatggtttgattctgctgcaatatttgaatctgattgcagtgatgaagatttccagagtgttcctgatgatgtactttctgtcaacagctttgattgtgggcggactagtgtagcttcgatcaaagatactaacaatggggatgttaatttaaaccccgatggacctcacagtgaggtacggcctgttttccttgatgagatctcgtcctcggaaaatataggtagtggcagggaggatggtttgtcggagaactgtggaattctttcaaacaactgtctgccccgtcttacctccactgttgtgcctgttgagaagagatctcttagctctagtcctccaagttcaaggaagaaagcggacctaaagcttcccttcaaatggaaagatggaaatccttgtgccactctactttcatctaaaaccctgcttcaaaggcccatagctggtagccaagtaccagtttgcccgttggagaataaattgcctgatagttggtcctatattgaaccaaataccttcagggtccggggaggaaactatttcagggacaaaaagaaagagtttgcggcaaataatgctgcatattatccttttggcgttgacgtatttttatctcaaagaaaaattgatcacattgctcaacttgtggaacttcctgtcattgaacactctgggacacttccacccattcttgtagtgaacattctctctcttttttacaggtgccattatatcctaccgcaatttttcagggtgaaactgacggtaaaggaatgagttttgtcttgtactttaagctttccgaaagttatgcaaaagaacttccttcttattttcaggagaacatcagaagagtaatggatgatgaagtggaaaaagtgaaggcttttccaatggatggtactgttccgtttagggaaaggttaaagatattaggtcgtgtagcaaatatggaggaccttcggttaagtgcagcagagaggaagctgatgcaggcatacaatgaaaaacctgttctttcacgtcctcaacatgagttctataagggagaaaattattttgagattgatattgatatgcacagattcagttacatctctagaaagggttgcgaaacattcctagataggctaaagctatgctccttggatgtaggcctcacaattcagggtaacaaaattgaagaattgccggagcagatcttatgttgtatacgattaaatgaaatcgactatgtgaattatcagcaactcggggctaataatgaaaccccttgaataggtgcactagcagtgtattccaccggatatggcaaataagtgaagaaattattgttagctagttgtgtccctcccttttacctcaactgtcaaatctctgagaagcaaatggcttatcgagagagtagtagatatttgaatctatgcacaaggatgagaaaatagtcgagtggtgttctttgtttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="118488" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118188" g_stop="117806" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117805" i_stop="117085" i_length="721">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117084" g_stop="117001" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="467" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117000" i_stop="116907" i_length="94">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116906" g_stop="116565" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="809" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116564" i_stop="115023" i_length="1542">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115022" g_stop="114887" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="945" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114886" i_stop="114624" i_length="263">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114623" g_stop="114461" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="946" r_stop="1108" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114460" i_stop="114154" i_length="307">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114153" g_stop="114011" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1109" r_stop="1251" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113673" g_stop="113479" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1252" r_stop="1446" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="113307" g_stop="113185" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1447" r_stop="1569" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="113184" i_stop="113109" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="113108" g_stop="112807" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1570" r_stop="1871" r_length="302" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-U316353" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118188" e_stop="117806"/>
          <exon e_start="117084" e_stop="117001"/>
          <exon e_start="116906" e_stop="116565"/>
          <exon e_start="115022" e_stop="114887"/>
          <exon e_start="114623" e_stop="114461"/>
          <exon e_start="114153" e_stop="114011"/>
          <exon e_start="113673" e_stop="113479"/>
          <exon e_start="113307" e_stop="113185"/>
          <exon e_start="113108" e_stop="112807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTCTCTGAAAATCATGTAACATAATTCCAAGAATATATCCTCTATTTTGTTTTTTTGAGATAATTAATGGCTTCTCCACCTCTTCAAGCTTCAAAATTCCTCAAAAATCAATAGATTTTTCTCTCTCTAAAAAAAAATGATATAGATTTTTTTTTGTTGTTGTTGTTGATATGATATAGTAGTTGTTGAGAAGCATATGATTCTGCTGAAATGGGAGCATGTGTATCGCGTCCAGATAGTTGTGTTGGAGGTAAATTGAAAGGTTCAAATAAGTTTAGGAAAAAAAGGGGGGGAAGAAGAAGAAGGAAGAAATCTAACTCACTTCATAAAATTGATGAGGCGTTTCCTTTGGATAACTATAATCCAACATTTCAGGGTACTTTCTCTGTTTTTACTTTTTTTTTTTTGGGATTATTAGGTGTTGTGATCTAGAATTTTGTTGAATTGAATTTTGAGTTAATTTGGTTAAGTTGAAGGTTTTTGAGGTGGAGATATGGAGGTGTGGAGGTGATGAGATCCACTTAGGATGGAAAAGTTTCGATAAATTCGAGTTTTAGTAGCTCAGTTGGTTGGTTACCTGAACTTTCACCTGCGATTCCCCAACTTGTAATGTTTTGTGCCCATTTCACTTCCCATATCCCCAATTTAGGGGAAAAATTAGTGTTAGATATATGCTTTTGATTGAGTAAGTGAAATATAGATTTTCTGATGAACACTTTAAAATCAAATTTTGATGGTTGTGATAATATGCACTTGTATTGGGTTGTTTTGTATACAATTTAACTTAAATAGTAAAACTTTAGATGGTGTGTTGTTCCGCTGCATACAATTTGCCTTGATAGTTTCTCATGTTCTTGTGATGTCGTTATCTTTTCCTAACTCCTGTTAAATGCCTTCAGCAAGTGGCAAGTTAAAGTGAGATTATATGTTTCGTTGTTCGTTAGGATATAAGTTTGTTTGCAACGTTACATCTATTATTCATTGGAAAGGATCTTGTATAGTTTAAGTTTTCATGTTTTTATTCGAAAGGTAAATAGCAGATAAAATCATCAGAAATAACCTTTGGAAATGTTTAATGTTTGTCATGGAAATCGCAGGACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATGGTACAGCGTTCTTAGTTTTCAATCTTCTGTTTCAACTGTTAGAATTTTGTTTCGTTTGAAGTTAGTAATACAAATATAAATACAATTACTGCAGATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTACGTGAGTATCTACATCTAAATTTTGATCTAGTTTCTTTGGCACAAAGTTCCTCAAATCTGCATTACATAATGGATTAAGTTTGAACATCATTGTTGGTTATTTTATGAATATTACTTCTAAAGTATCTTAAATTTGTTGCAATTAGTAATTAGCAATTTTTGCTATTGAAGACATTTATAAAGAGAAATTTCAAGAATTACACCACGTTATAACAGGATTTAGTTATTGTTAAGAGGAACATCTTTCAAGAAACAACAATTATTATTGTTCAAAGGAATATCTTGTCTCGAAATACATTTTAAGGAACTAGTGCTCTTATTGGATTATCCATGTCTCATTTTCTTTGAGGCAAAATTATGTGTTATCTGATGACTGTTTCAGCTGCTTTATATATTTGGAGTTGGTACTGTTGAATGGCTTGAATCGGATCCGTTACAACAGAAAGGACGGGGGTCTTAATTATCTGTCAATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCTTAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTTTGTATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCATTTATATTTTCTCGTATTATCTCGAATTCCGCACAACAGGTACATTCGGACTAGCAAAAACAGCTCTCCTCAAATACAACTGAAAATGTAGTTGATTTGTACAGGGCAGTGATAAAACTAGTTACAGCTGAAACATATTTCCCAACTAATTGATATTGCTTATATAAATCTTTCGCTATGTGTGAATTCATTCCAAACAATTATAGGCCTTTTGAGGCCACTGTTTTCCATGTGATTTTAGGTGTACCTCGTCTCCTTTTTAAGCAAGTAACTCCCTTAATATAAGTGTAGGAGTGTGAAGGTGGGGTCAGTATAGAAGATAAAACAAAGGCATCCTTGTCAAGGTCCTTGATTCTCTGCTGCACCTTGGCGCGGAACGGATCTTAACAATCTACTTTTTAATAGAAAATTAGTCTAGCTGAGAAAGGAAAAGTAGTTCCAAAAGGAGACTTGACCTAGCAAATGCGATCTTCACCTCAATGCTATACTTCGGCAGCTACGGACTAAGACGCTTCAGAAGAAAAGCTACATCCACCACTTGGCGGATCTTTAATAATGCACTTCTAAGGGAAAATTTAGTCTAGCTGTTTCTCAAAATTCAGTTTTGACCTTTTAGACCTATTTTGTATATCAAGCTGTAAAATCAAGAGAGAAGGAAAAAGAAAAGAAGAGAGTGATTGTGATAGAGGAATTGAATCCTTGACATCATATGTCTGTCTCCGAGCCTGAAAACTGGCTGTTTGGCATCTTGTGTAAATGTTTAAACTTGAAATTTCTCTATAAATTTGTCTTTCGGATGGACTCAAGAGTGATGATTAATTTATCTGTGATCCAGTTACCAGATCAAGGAGAAGGAAATACAATTAGCTAACTTTTATTTGTTTTTGGGTACAGTTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAGGTAATATACTTACAGATACACAAAACAAACAGGTAAGCACTTATTTTATGAGTGTGACAATCTAGTCTTAAAAAAATGGCTAAGATGAAATCCTTCATTTAGAAAAAGTAGAAAAGAAAGGGAAAATCCATATGCCCCATAGTTAAAGATGTGTTTTGTGGACGTTATGGTTATCCTAAGTTTGTGTAACCATGCTTTCTGCCAATGCAACTGCCCTCTACTTTTGTTTATGTTGTATCATTCACATATTGTATTTTCTGCAGGGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAGGTACCGTTTAATTAGTGTAGCTTTAAGAGAATAAGTGTGTTTCTTTTCTTTTTTTTCTCCATTGCTCTGGCTGTCATTAAGTTGGTCTGATGGTTAATTTAAAGATAGTAATATTTATGCTTAAGATACACATGAAATGTGTTTCGAGTCTCTTCAAAGTCAAAGTTATTCAACACCCGAATGGTTTGTGAACTGAGACTTTATTCGCCTCCATGTAAGTTTCCAATCTAGCTGGCTGTATAACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGAGTAAGTTCTAGACTTCTAGTTACCATGTCATTGGTCCTTGTTTTTCTTTTAACCTGTCTCTAGTTGAATATTTCCTGTTACTTCTTAATTGTTTAATCATGTTTCTTCATGTTCGTCTTTTTTATTGTGCCTCTTGTAATATTTGTTTCTCTGTTGGTGTTTTCTTTTTTCACATTCTGTTAGTTTCTGTGTACATTCTCTAGTAGTATTGTGTTGGGTGCTGATTGTTACGTAGTCATTATTTCATGGTTTATTTACCTCTTGTCTGTTTCTTTGTAAACTATCAGAGTCCGAATTTTTACTGAACAATCTTTTCCTACTCTATCCTATTGATCAGAGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCATATTGAAGGAAATATGTTCCAAGTTCTTATTACGTTGCTAATGATGTCTTTGTAGGGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAGGTGAGTATCTGTATGTGACCTCAAATTCTCTTCTTTCCAAATTCAGCTGCAAGTAATTATTCACTTTTCAAATCAGGGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGGACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTCAATGT</genome_strand>
        <mrna_strand>TTTCTTCTTCTCTGAAAATCATGTAACATAACTTCAAAAATATATCCTCTATTTTGTTTTTTTGAGATAATTAATGGCTTCTCCACCTCTTCAAGCTTCAAAATTCCTCAAAAATCAATAGATTTTTCTCTCTCTAAAAAAAAATGATATAGATTTTTTTTTGTTGTTGTTGTTGATATGATATAGTAGTTGTTGAGAAGCATATGATTCTGCTGAAATGGGAGCATGTGTATCGCGTCCAGATAGTTGTGTTGGAGGTAAATTGAAAGGTTCAAATAAGTTTAGGAAAAAAAGGGGGGGAAGAAGAAGAAGGAAGAAATCTAACTCACTTCATAAAATTGATGAGGCGTTTCCTTTGGATAACTATAATCCAACATTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATG..............................................................................................ATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAG.......................................................................................................................................................................................................................................................................GGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCTC...................................................................................................................................................................................................................................................................................................................TCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGA.................................................................................................................................................................................................................................................................................................................................................AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG...........................................................................................................................................................................GGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAG............................................................................GGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGCACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335618" ref_strand="+" ref_description="SGN-U335618        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, ; supporting cDNA gi:6520232:dbj:AB028233.1: | chr1:21923410-21926588 FORWARD | Aliases: T30E16.22, T30E16_22(evalue: 6e-14, score=74.7) genbank/nr: gi|18406410|ref|NP_564750.1| expressed protein CW14 [Arabidopsis thaliana] gi|25369722|pir||T52427 hypothetical protein CW14 [imported] - Arabidopsis thaliana gi|6520233|dbj|BAA87958.1| CW14 [Arabidopsis thaliana] gi|8778748|gb|AAF79756.1| T30E16.22 [Arabidopsis thaliana] gi|28393683|gb|AAO42254.1| unknown protein [Arabidopsis thaliana] gi|28973197|gb|AAO63923.1| unknown protein [Arabidopsis thaliana](evalue: 5e-12, score=74.7)">
      <seq>ttccgctgcatacaattagccttgatagtttctcatgttcttgtgatgtcgttatcttttcctaactcctgttaaatgccttcagcaagtggcaagttaaagtgagattatatgtatcgttgttcgttaggatataagtttgtttgcaacgttacatctattattcattggaaaggatctttgttagaactaaccctcatgttggtattcgaaaggtaaatagcacataaaatcatcagaaataacctttggaaatgtttaatgtttgtcatggaaatcgcaggaccgattgaggaggcatggtttgattctgctgcaatatttgaatctgattgcagtgatgaagatttccagagtgttcctgatgatgtactttctgtcaacagctttgattgtgggcggactactgtagcttcgatcaaagatactaacaatggggatgttaatttaaaccccgatggacctcacagtgaggtacggcctgttttccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="117667" stop="116480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117367" g_stop="117001" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117000" i_stop="116907" i_length="94">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116906" g_stop="116780" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="494" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-U335618" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117367" e_stop="117001"/>
          <exon e_start="116906" e_stop="116780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGCTGCATACAATTTGCCTTGATAGTTTCTCATGTTCTTGTGATGTCGTTATCTTTTCCTAACTCCTGTTAAATGCCTTCAGCAAGTGGCAAGTTAAAGTGAGATTATATGTTTCGTTGTTCGTTAGGATATAAGTTTGTTTGCAACGTTACATCTATTATTCATTGGAAAGGATCTTGTATAGTTTAAGTTTTCATGTTTTTATTCGAAAGGTAAATAGCAGATAAAATCATCAGAAATAACCTTTGGAAATGTTTAATGTTTGTCATGGAAATCGCAGGACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATGGTACAGCGTTCTTAGTTTTCAATCTTCTGTTTCAACTGTTAGAATTTTGTTTCGTTTGAAGTTAGTAATACAAATATAAATACAATTACTGCAGATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGA</genome_strand>
        <mrna_strand>TTCCGCTGCATACAATTAGCCTTGATAGTTTCTCATGTTCTTGTGATGTCGTTATCTTTTCCTAACTCCTGTTAAATGCCTTCAGCAAGTGGCAAGTTAAAGTGAGATTATATGTATCGTTGTTCGTTAGGATATAAGTTTGTTTGCAACGTTACATCTATTATTCATTGGAAAGGATCTTTGTTAGAACTAACCCTCATGTTGGTATTCGAAAGGTAAATAGCACATAAAATCATCAGAAATAACCTTTGGAAATGTTTAATGTTTGTCATGGAAATCGCAGGACCGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATG..............................................................................................ATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTACTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335619" ref_strand="+" ref_description="SGN-U335619        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tgtatcgcgtccagatagttgtgttggaggaaattgaaaggtcaaataagtttaggaaaaaaagggggggaagaagaagaaggaagaaatctaactcacttcataaaattgatgaggcgtttcctttggataactataatccaacatttcagggacggattgaggaggcatggtttgattctgctgcaatatttgatctgattgcagtgatgaaatttcagagtgtcctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="118260" stop="116701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117960" g_stop="117806" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117805" i_stop="117085" i_length="721">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117084" g_stop="117001" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="233" r_length="80" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-U335619" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117960" e_stop="117806"/>
          <exon e_start="117084" e_stop="117001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCGCGTCCAGATAGTTGTGTTGGAGGTAAATTGAAAGGTTCAAATAAGTTTAGGAAAAAAAGGGGGGGAAGAAGAAGAAGGAAGAAATCTAACTCACTTCATAAAATTGATGAGGCGTTTCCTTTGGATAACTATAATCCAACATTTCAGGGTACTTTCTCTGTTTTTACTTTTTTTTTTTTGGGATTATTAGGTGTTGTGATCTAGAATTTTGTTGAATTGAATTTTGAGTTAATTTGGTTAAGTTGAAGGTTTTTGAGGTGGAGATATGGAGGTGTGGAGGTGATGAGATCCACTTAGGATGGAAAAGTTTCGATAAATTCGAGTTTTAGTAGCTCAGTTGGTTGGTTACCTGAACTTTCACCTGCGATTCCCCAACTTGTAATGTTTTGTGCCCATTTCACTTCCCATATCCCCAATTTAGGGGAAAAATTAGTGTTAGATATATGCTTTTGATTGAGTAAGTGAAATATAGATTTTCTGATGAACACTTTAAAATCAAATTTTGATGGTTGTGATAATATGCACTTGTATTGGGTTGTTTTGTATACAATTTAACTTAAATAGTAAAACTTTAGATGGTGTGTTGTTCCGCTGCATACAATTTGCCTTGATAGTTTCTCATGTTCTTGTGATGTCGTTATCTTTTCCTAACTCCTGTTAAATGCCTTCAGCAAGTGGCAAGTTAAAGTGAGATTATATGTTTCGTTGTTCGTTAGGATATAAGTTTGTTTGCAACGTTACATCTATTATTCATTGGAAAGGATCTTGTATAGTTTAAGTTTTCATGTTTTTATTCGAAAGGTAAATAGCAGATAAAATCATCAGAAATAACCTTTGGAAATGTTTAATGTTTGTCATGGAAATCGCAGGACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATG</genome_strand>
        <mrna_strand>TGTATCGCGTCCAGATAGTTGTGTTGGAGG-AAATTGAAAGG-TCAAATAAGTTTAGGAAAAAAAGGGGGGGAAGAAGAAGAAGGAAGAAATCTAACTCACTTCATAAAATTGATGAGGCGTTTCCTTTGGATAACTATAATCCAACATTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTG-ATCTGATTGCAGTGATGAA-ATTT-CAGAGTG-TCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9531" PGL_stop="12350"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9531" e_stop="9721"/>
            <exon e_start="10608" e_stop="12350"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.899" acc_prob="0.988" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="9531" e_stop="9721" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.899" acc_prob="0.988">
            <gDNA_intron_boundary i_start="9722" i_stop="10607" i_length="886"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10608" e_stop="12350" e_length="1743"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9531" stop="9721"/>
              <exon start="10608" stop="12350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322505" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGGAAGAGAGATAAAAGGGGTCCTCTGAAAAATTATGCCCCAAAGCAGAAGCCAAAGTCTACTTTGATTGTACAAAGAATCCACAGAAACAAAAAAATCACACAAAAAAAAGGAAGAAAAAGAGAGCAAAATCACACACATACACACAGTTGAATTTTAAGTTGAAGATGTATACATAAATCTAATCAG : GTTGAACCTGGACGATATGTTGGAAGATCGATCTTGTTTGGTTCCTAGGGATTTCTCAAGAGAAAACAACAACTGGTCGGCCTGCATTAATTACAGCCTCGATATGATTGAAGTTCAGAATGGTAAAAGGCCATTGGAAAATAATCAGGAGGATGAAGTTGTGCAACGCAAGTTGCCAAAGCTATCTGATGCTCGTGATGGAAAAGAAGTCGTTCTAGCCTCACCACATGACCAAGCTGGTGATCAGCGTCATGATGAAGATACTAGTTCTCTTATTCCTTCCATTGGCCGAGACAACTCTGTTAGCTCTCTCATTCATTGCTCCAGGTCTGATTTTGGGGCTATTGCATCTTTAAATCGTAGCTTTCGCTCGTTAATTAGTAGTGGGGAGCTTTACAGACTGAGGCGTCAACAAGGCGTGGTTGAGCATTGGGTTTATTTTTCTTGCCATCTACGTCAATGGGAAGCTTTTGACCCCATTCGTCGCCGTTGGATGCATCTACCATCAATGAATTTCAATGAATGTTTTGTGTTCTCAGACAAGGAGTCTTTAGCAGTTGGGACAGAGCTGCTTGTGTTTGGAAAGGAGATATTGTCACATGTCATTTATCGTTATAGTTTGCTGACAAACAGTTGGTCAGCTGGAACAGAAATGAACGCACCAAGGTGTTTGTTTGGCTCTGCCAGCTCTGGGGAGATTGCCATTCTAGCTGGTGGTTGTGACTCACAGGGCAATATCCTCAGCTCAGCAGAACTTTACAATTCAGAGACTGGAACATGGAAGACCTTACCAAGCATGAACAAGCGGCGGAAGATGTGTTCTGCAGTATTTATGGACAAAAAGTTTTACGTAATTGGAGGCATTGGAGGTACGGAGTCATCAAACGCGCTACTGACTTGTGGAGAGGAATATGATTTGAAAACAGGAAAATGGACTGAAATTTCGAGCATGTCTCCTGTCCGAGCTAGGGGTGATATGCCTGCTACTTCTGAAGCACCTCCTTTGGTTGCGGTTGTGAATAATGATTTGTATGCTGCTGATTATGCTGACATGGAGGTGAGGAAGTATGACAAGAAAAACAAAACATGGGCTACTATAGGAAGATTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGCTTGGCTTTTCGAGCTTGTGGTGATAGGCTAATTGTAATCGGAGGACCTAGAACCATGGGTGAAGGGCATATCGAAGTTAATTCATGGGTTCCTAGTGAAGGACCGCCTCAGTGGAACTTGCTTGGACGAAAGCGATCTGGTAGCTTTGTGTATAATTGTGCTGTCATGGGTTGCTGACATATGATTTTTGCAAGTAGATACAGAATTGGGAATTCTTGCCAATTGGTAACTTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAACTCCAAAGGCGGCCGCAGAGGTAAAATATTAACTTGAAGATGGGAGCAATACAGTGATAGATTTTGGTTATGCTGTGATCCTTATTTTTCTTGACATTGTTGAGGAAGAAAAATAAGGTTTTGTAGTGATGTTCATTTGACATCTTGTTTTATGTACCAAATACATTTATTCTTGTTGACAACAGGCTACAAGTTGAGACAATATTGGTGCCTTTAGAATGCCTTTCT</gDNA_template>
            <first_frame> Y  G  R  E  I  K  G  V  L  *  K  I  M  P  Q  S  R  S  Q  S  L  L  *  L  Y  K  E  S  T  E  T  K  K  S  H  K  K  K  E  E  K  E  S  K  I  T  H  I  H  T  V  E  F  *  V  E  D  V  Y  I  N  L  I  R :   L  N  L  D  D  M  L  E  D  R  S  C  L  V  P  R  D  F  S  R  E  N  N  N  W  S  A  C  I  N  Y  S  L  D  M  I  E  V  Q  N  G  K  R  P  L  E  N  N  Q  E  D  E  V  V  Q  R  K  L  P  K  L  S  D  A  R  D  G  K  E  V  V  L  A  S  P  H  D  Q  A  G  D  Q  R  H  D  E  D  T  S  S  L  I  P  S  I  G  R  D  N  S  V  S  S  L  I  H  C  S  R  S  D  F  G  A  I  A  S  L  N  R  S  F  R  S  L  I  S  S  G  E  L  Y  R  L  R  R  Q  Q  G  V  V  E  H  W  V  Y  F  S  C  H  L  R  Q  W  E  A  F  D  P  I  R  R  R  W  M  H  L  P  S  M  N  F  N  E  C  F  V  F  S  D  K  E  S  L  A  V  G  T  E  L  L  V  F  G  K  E  I  L  S  H  V  I  Y  R  Y  S  L  L  T  N  S  W  S  A  G  T  E  M  N  A  P  R  C  L  F  G  S  A  S  S  G  E  I  A  I  L  A  G  G  C  D  S  Q  G  N  I  L  S  S  A  E  L  Y  N  S  E  T  G  T  W  K  T  L  P  S  M  N  K  R  R  K  M  C  S  A  V  F  M  D  K  K  F  Y  V  I  G  G  I  G  G  T  E  S  S  N  A  L  L  T  C  G  E  E  Y  D  L  K  T  G  K  W  T  E  I  S  S  M  S  P  V  R  A  R  G  D  M  P  A  T  S  E  A  P  P  L  V  A  V  V  N  N  D  L  Y  A  A  D  Y  A  D  M  E  V  R  K  Y  D  K  K  N  K  T  W  A  T  I  G  R  L  P  E  R  A  A  S  M  N  G  W  G  L  A  F  R  A  C  G  D  R  L  I  V  I  G  G  P  R  T  M  G  E  G  H  I  E  V  N  S  W  V  P  S  E  G  P  P  Q  W  N  L  L  G  R  K  R  S  G  S  F  V  Y  N  C  A  V  M  G  C  *  H  M  I  F  A  S  R  Y  R  I  G  N  S  C  Q  L  V  T  Y  P  N  L  F  V  S  E  S  F  C  F  I  L  S  D  Y  Q  T  I  P  N  I  Q  Q  N  Y  V  I  *  K  V  D  P  E  Y  D  L  S  H  L  P  F  S  F  A  *  N  S  K  G  G  R  R  G  K  I  L  T  *  R  W  E  Q  Y  S  D  R  F  W  L  C  C  D  P  Y  F  S  *  H  C  *  G  R  K  I  R  F  C  S  D  V  H  L  T  S  C  F  M  Y  Q  I  H  L  F  L  L  T  T  G  Y  K  L  R  Q  Y  W  C  L  *  N  A  F   </first_frame>
            <second_frame>  M  E  E  R  *  K  G  S  S  E  K  L  C  P  K  A  E  A  K  V  Y  F  D  C  T  K  N  P  Q  K  Q  K  N  H  T  K  K  R  K  K  K  R  A  K  S  H  T  Y  T  Q  L  N  F  K  L  K  M  Y  T  *  I  *  S   : G  *  T  W  T  I  C  W  K  I  D  L  V  W  F  L  G  I  S  Q  E  K  T  T  T  G  R  P  A  L  I  T  A  S  I  *  L  K  F  R  M  V  K  G  H  W  K  I  I  R  R  M  K  L  C  N  A  S  C  Q  S  Y  L  M  L  V  M  E  K  K  S  F  *  P  H  H  M  T  K  L  V  I  S  V  M  M  K  I  L  V  L  L  F  L  P  L  A  E  T  T  L  L  A  L  S  F  I  A  P  G  L  I  L  G  L  L  H  L  *  I  V  A  F  A  R  *  L  V  V  G  S  F  T  D  *  G  V  N  K  A  W  L  S  I  G  F  I  F  L  A  I  Y  V  N  G  K  L  L  T  P  F  V  A  V  G  C  I  Y  H  Q  *  I  S  M  N  V  L  C  S  Q  T  R  S  L  *  Q  L  G  Q  S  C  L  C  L  E  R  R  Y  C  H  M  S  F  I  V  I  V  C  *  Q  T  V  G  Q  L  E  Q  K  *  T  H  Q  G  V  C  L  A  L  P  A  L  G  R  L  P  F  *  L  V  V  V  T  H  R  A  I  S  S  A  Q  Q  N  F  T  I  Q  R  L  E  H  G  R  P  Y  Q  A  *  T  S  G  G  R  C  V  L  Q  Y  L  W  T  K  S  F  T  *  L  E  A  L  E  V  R  S  H  Q  T  R  Y  *  L  V  E  R  N  M  I  *  K  Q  E  N  G  L  K  F  R  A  C  L  L  S  E  L  G  V  I  C  L  L  L  L  K  H  L  L  W  L  R  L  *  I  M  I  C  M  L  L  I  M  L  T  W  R  *  G  S  M  T  R  K  T  K  H  G  L  L  *  E  D  C  L  K  E  Q  L  Q  *  M  V  G  A  W  L  F  E  L  V  V  I  G  *  L  *  S  E  D  L  E  P  W  V  K  G  I  S  K  L  I  H  G  F  L  V  K  D  R  L  S  G  T  C  L  D  E  S  D  L  V  A  L  C  I  I  V  L  S  W  V  A  D  I  *  F  L  Q  V  D  T  E  L  G  I  L  A  N  W  *  L  I  P  T  F  S  F  L  N  P  S  V  L  S  Y  Q  I  T  K  L  Y  P  I  F  N  R  I  T  L  F  R  R  S  I  L  S  T  T  Y  L  I  S  H  F  H  L  H  K  T  P  K  A  A  A  E  V  K  Y  *  L  E  D  G  S  N  T  V  I  D  F  G  Y  A  V  I  L  I  F  L  D  I  V  E  E  E  K  *  G  F  V  V  M  F  I  *  H  L  V  L  C  T  K  Y  I  Y  S  C  *  Q  Q  A  T  S  *  D  N  I  G  A  F  R  M  P  F  </second_frame>
            <third_frame>   W  K  R  D  K  R  G  P  L  K  N  Y  A  P  K  Q  K  P  K  S  T  L  I  V  Q  R  I  H  R  N  K  K  I  T  Q  K  K  G  R  K  R  E  Q  N  H  T  H  T  H  S  *  I  L  S  *  R  C  I  H  K  S  N  Q  :  V  E  P  G  R  Y  V  G  R  S  I  L  F  G  S  *  G  F  L  K  R  K  Q  Q  L  V  G  L  H  *  L  Q  P  R  Y  D  *  S  S  E  W  *  K  A  I  G  K  *  S  G  G  *  S  C  A  T  Q  V  A  K  A  I  *  C  S  *  W  K  R  S  R  S  S  L  T  T  *  P  S  W  *  S  A  S  *  *  R  Y  *  F  S  Y  S  F  H  W  P  R  Q  L  C  *  L  S  H  S  L  L  Q  V  *  F  W  G  Y  C  I  F  K  S  *  L  S  L  V  N  *  *  W  G  A  L  Q  T  E  A  S  T  R  R  G  *  A  L  G  L  F  F  L  P  S  T  S  M  G  S  F  *  P  H  S  S  P  L  D  A  S  T  I  N  E  F  Q  *  M  F  C  V  L  R  Q  G  V  F  S  S  W  D  R  A  A  C  V  W  K  G  D  I  V  T  C  H  L  S  L  *  F  A  D  K  Q  L  V  S  W  N  R  N  E  R  T  K  V  F  V  W  L  C  Q  L  W  G  D  C  H  S  S  W  W  L  *  L  T  G  Q  Y  P  Q  L  S  R  T  L  Q  F  R  D  W  N  M  E  D  L  T  K  H  E  Q  A  A  E  D  V  F  C  S  I  Y  G  Q  K  V  L  R  N  W  R  H  W  R  Y  G  V  I  K  R  A  T  D  L  W  R  G  I  *  F  E  N  R  K  M  D  *  N  F  E  H  V  S  C  P  S  *  G  *  Y  A  C  Y  F  *  S  T  S  F  G  C  G  C  E  *  *  F  V  C  C  *  L  C  *  H  G  G  E  E  V  *  Q  E  K  Q  N  M  G  Y  Y  R  K  I  A  *  K  S  S  F  N  E  W  L  G  L  G  F  S  S  L  W  *  *  A  N  C  N  R  R  T  *  N  H  G  *  R  A  Y  R  S  *  F  M  G  S  *  *  R  T  A  S  V  E  L  A  W  T  K  A  I  W  *  L  C  V  *  L  C  C  H  G  L  L  T  Y  D  F  C  K  *  I  Q  N  W  E  F  L  P  I  G  N  L  S  Q  P  F  R  F  *  I  L  L  F  Y  L  I  R  L  P  N  Y  T  Q  Y  S  T  E  L  R  Y  L  E  G  R  S  *  V  R  L  I  S  S  P  I  F  I  C  I  K  L  Q  R  R  P  Q  R  *  N  I  N  L  K  M  G  A  I  Q  *  *  I  L  V  M  L  *  S  L  F  F  L  T  L  L  R  K  K  N  K  V  L  *  *  C  S  F  D  I  L  F  Y  V  P  N  T  F  I  L  V  D  N  R  L  Q  V  E  T  I  L  V  P  L  E  C  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9693" stop="9721"/>
                    <exon start="10608" stop="11925"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1344</number_coding_nucleotides>
                  <number_encoded_amino_acids>448</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEDVYINLIRLNLDDMLEDRSCLVPRDFSRENNNWSACINYSLDMIEVQNGKRPLENNQEDEVVQRKLPKLSDARDGKEVVLASPHDQAGDQRHDEDTSSLIPSIGRDNSVSSLIHCSRSDFGAIASLNRSFRSLISSGELYRLRRQQGVVEHWVYFSCHLRQWEAFDPIRRRWMHLPSMNFNECFVFSDKESLAVGTELLVFGKEILSHVIYRYSLLTNSWSAGTEMNAPRCLFGSASSGEIAILAGGCDSQGNILSSAELYNSETGTWKTLPSMNKRRKMCSAVFMDKKFYVIGGIGGTESSNALLTCGEEYDLKTGKWTEISSMSPVRARGDMPATSEAPPLVAVVNNDLYAADYADMEVRKYDKKNKTWATIGRLPERAASMNGWGLAFRACGDRLIVIGGPRTMGEGHIEVNSWVPSEGPPQWNLLGRKRSGSFVYNCAVMGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14353" PGL_stop="13114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14353" e_stop="14054"/>
            <exon e_start="13389" e_stop="13114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.375" e_score="0.927"/>
          <exon-only e_score="0.899"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="14353" e_stop="14054" e_length="300"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.375">
            <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664"/>
          </intron>
          <exon e_serial="2" e_score="0.899">
            <gDNA_exon_boundary e_start="13389" e_stop="13114" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14353" stop="14054"/>
              <exon start="13389" stop="13114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339156" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG : AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAG</gDNA_template>
            <first_frame> T  K  V  Q  E  G  A  L  E  S  S  V  C  F  E  P  Y  Q  E  C  C  *  N  A  S  D  I  G  *  E  G  S  T  S  Y  F  *  R  *  S  S  L  E  E  D  E  Q  V  W  V  V  G  *  E  P  K  Q  A  R  L  C  L  G  T  H  R  G  E  L  S  *  A  S  S  P  N  T  S  V  Q  D  R  H  G  *  V  N  S  S  C  Q  S  A  H  Q  A  K  A  Y  Q  :  S  W  *  A  G  G  E  C  C  F  F  Y  G  E  S  R  L  P  E  A  H  *  L  L  S  H  *  S  I  W  R  W  A  S  W  K  S  E  A  K  E  P  K  V  C  C  Q  E  G  C  W  W  *  W  *  *  R  G  *  R  M  I  N  Y  L  S  V  W  S  I  W  L  V  V  L  T  Y  L  F  F  L  L  F  V  V  Y  L  H  V  V  V  K </first_frame>
            <second_frame>  L  R  C  K  R  E  L  W  R  V  Q  Y  A  L  S  R  I  R  N  A  A  R  M  L  L  T  L  D  E  K  D  P  R  R  I  F  E  G  E  A  L  L  R  R  M  N  R  Y  G  L  L  D  E  S  Q  N  K  L  D  Y  V  L  A  L  T  V  E  N  F  L  E  R  R  L  Q  T  L  V  F  K  T  G  M  A  K  S  I  H  H  A  R  V  L  I  R  Q  R  H  I  R :   V  G  R  Q  V  V  N  V  A  S  F  M  V  R  V  D  S  Q  K  H  I  D  F  S  L  T  S  P  F  G  G  G  R  P  G  R  V  K  R  K  N  Q  K  S  A  A  K  K  A  A  G  G  D  G  D  E  E  D  E  E  *  S  T  I  L  V  F  G  L  F  G  L  *  F  *  P  I  F  F  F  C  Y  L  W  F  T  F  M  *  *  *   </second_frame>
            <third_frame>   *  G  A  R  G  S  F  G  E  F  S  M  L  *  A  V  S  G  M  L  L  E  C  F  *  H  W  M  R  R  I  H  V  V  F  L  K  V  K  L  S  *  G  G  *  T  G  M  G  C  W  M  R  A  K  T  S  S  I  M  S  W  H  S  P  W  R  T  F  L  S  V  V  S  K  H  *  C  S  R  P  A  W  L  S  Q  F  I  M  P  E  C  S  S  G  K  G  I  S   : E  L  V  G  R  W  *  M  L  L  L  L  W  *  E  *  T  P  R  S  T  L  T  S  L  S  L  V  H  L  A  V  G  V  L  E  E  *  S  E  R  T  K  S  L  L  P  R  R  L  L  V  V  M  V  M  K  R  M  K  N  D  Q  L  S  *  C  L  V  Y  L  A  C  S  S  D  L  S  F  F  S  A  I  C  G  L  P  S  C  S  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14352" stop="14054"/>
                    <exon start="13389" stop="13206"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRCKRELWRVQYALSRIRNAARMLLTLDEKDPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKTGMAKSIHHARVLIRQRHIRVGRQVVNVASFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKSAAKKAAGGDGDEEDEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18252" PGL_stop="18840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18252" e_stop="18840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="18252" e_stop="18840" e_length="589"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18252" stop="18840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342048" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGTACCACAACGATATTGCCCCTTCCGGCACCGCCGTTGGATGGGAATCTGGGACCAACACCTCCTGCTCAGGTGGTAGAGGAACCAGAGGATGATAGGATGGAAGAGAATGAAGAGGACAACAATAAAGGCAACAAGGTTCCAACATCTGTTGCTACACATACTAGAACTATTGGTATCATTTACCCTCCTCCAGATATTAGGAGTATTGTTGATAAGACTTCGCAGTTTGTTGCGAAGAATGGTCCGGAATTTGAGAAGAGAATTGTTCTAAATAATGCTGGCAATGCGAAATTTAACTTCTTGAATGCCTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGATGCTCGCGCACAGAATCAGGCTTCTGGAGAGCAGCCTACTCAGCCAGATGACAATGAAGCAGCCCCTGCTCCTCCTACTGCTGATGGTGCTGAGGCAACTGCTAAACCTGATCCGTCAGCTCAGTTTAGACCTGTAAGAAAGGTTCTCGAGCCACCTGAGGCAGAGCAATATACTGTAAGACTCCCTGAAGGGATCACAGGTGAAGAACTGGATATTATTAAGCTAACAGCAC</gDNA_template>
            <first_frame> F  G  T  T  T  I  L  P  L  P  A  P  P  L  D  G  N  L  G  P  T  P  P  A  Q  V  V  E  E  P  E  D  D  R  M  E  E  N  E  E  D  N  N  K  G  N  K  V  P  T  S  V  A  T  H  T  R  T  I  G  I  I  Y  P  P  P  D  I  R  S  I  V  D  K  T  S  Q  F  V  A  K  N  G  P  E  F  E  K  R  I  V  L  N  N  A  G  N  A  K  F  N  F  L  N  A  S  D  P  Y  H  A  Y  Y  Q  H  R  L  A  D  A  R  A  Q  N  Q  A  S  G  E  Q  P  T  Q  P  D  D  N  E  A  A  P  A  P  P  T  A  D  G  A  E  A  T  A  K  P  D  P  S  A  Q  F  R  P  V  R  K  V  L  E  P  P  E  A  E  Q  Y  T  V  R  L  P  E  G  I  T  G  E  E  L  D  I  I  K  L  T  A  </first_frame>
            <second_frame>  L  V  P  Q  R  Y  C  P  F  R  H  R  R  W  M  G  I  W  D  Q  H  L  L  L  R  W  *  R  N  Q  R  M  I  G  W  K  R  M  K  R  T  T  I  K  A  T  R  F  Q  H  L  L  L  H  I  L  E  L  L  V  S  F  T  L  L  Q  I  L  G  V  L  L  I  R  L  R  S  L  L  R  R  M  V  R  N  L  R  R  E  L  F  *  I  M  L  A  M  R  N  L  T  S  *  M  P  L  I  L  T  M  P  I  I  S  T  V  W  L  M  L  A  H  R  I  R  L  L  E  S  S  L  L  S  Q  M  T  M  K  Q  P  L  L  L  L  L  L  M  V  L  R  Q  L  L  N  L  I  R  Q  L  S  L  D  L  *  E  R  F  S  S  H  L  R  Q  S  N  I  L  *  D  S  L  K  G  S  Q  V  K  N  W  I  L  L  S  *  Q  H </second_frame>
            <third_frame>   W  Y  H  N  D  I  A  P  S  G  T  A  V  G  W  E  S  G  T  N  T  S  C  S  G  G  R  G  T  R  G  *  *  D  G  R  E  *  R  G  Q  Q  *  R  Q  Q  G  S  N  I  C  C  Y  T  Y  *  N  Y  W  Y  H  L  P  S  S  R  Y  *  E  Y  C  *  *  D  F  A  V  C  C  E  E  W  S  G  I  *  E  E  N  C  S  K  *  C  W  Q  C  E  I  *  L  L  E  C  L  *  S  L  P  C  L  L  S  A  P  F  G  *  C  S  R  T  E  S  G  F  W  R  A  A  Y  S  A  R  *  Q  *  S  S  P  C  S  S  Y  C  *  W  C  *  G  N  C  *  T  *  S  V  S  S  V  *  T  C  K  K  G  S  R  A  T  *  G  R  A  I  Y  C  K  T  P  *  R  D  H  R  *  R  T  G  Y  Y  *  A  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18252" stop="18839"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGTTTILPLPAPPLDGNLGPTPPAQVVEEPEDDRMEENEEDNNKGNKVPTSVATHTRTIGIIYPPPDIRSIVDKTSQFVAKNGPEFEKRIVLNNAGNAKFNFLNASDPYHAYYQHRLADARAQNQASGEQPTQPDDNEAAPAPPTADGAEATAKPDPSAQFRPVRKVLEPPEAEQYTVRLPEGITGEELDIIKLTA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19456" PGL_stop="20681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19456" e_stop="19924"/>
            <exon e_start="19975" e_stop="20390"/>
            <exon e_start="20523" e_stop="20681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.986"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="19456" e_stop="19924" e_length="469"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19925" i_stop="19974" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="19975" e_stop="20390" e_length="416"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20391" i_stop="20522" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="20523" e_stop="20681" e_length="159"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19456" stop="19924"/>
              <exon start="19975" stop="20390"/>
              <exon start="20523" stop="20681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAAGAGAGGATCCTGGCAGAAAGGGACCCAACTAAGTATGTTGTCTCTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAACCTTCCTGGACCGCAGGCTCCTCCACCTCCCAGACCTGGTTTTCCATCTATTAGGCCACT : TCCAGTATTCTACTCCTGGGGTTGCTGCTCCGCCTCCACCTCGACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAGAGCCAAAGAGGCAAAAGCTTGAAGAGTCTATTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCACTCG : GGACCTGCAAGGATCAATATATCTGTGCCGAATACCGATGAAGGGAATCTCAAAGGACAAATTCTGGAAATTACAGTGCAATCTCTGTCCGAAACCATTGCCAGTCTAAAAGAGAAGATTTCTGGGGAGATTCAGCTGCCTGCAAACAAACAGAAACTG</gDNA_template>
            <first_frame> L  K  R  G  S  W  Q  K  G  T  Q  L  S  M  L  S  L  L  *  P  V  S  S  Y  L  L  M  R  C  L  N  I  *  G  S  L  S  L  I  Q  S  T  R  N  R  R  T  G  C  L  R  R  L  R  R  R  L  L  R  R  M  M  R  F  L  G  T  L  L  D  L  Q  E  P  V  R  I  Y  L  V  P  Q  K  K  K  F  Q  M  R  S  R  L  R  L  R  K  R  R  K  S  R  S  K  S  Y  G  M  V  T  Q  V  A  L  V  A  L  R  T  R  Q  C  L  R  T  V  M  I  R  M  M  L  Q  M  M  Q  E  T  F  L  D  R  R  L  L  H  L  P  D  L  V  F  H  L  L  G  H   : F  Q  Y  S  T  P  G  V  A  A  P  P  P  P  R  P  P  M  V  N  M  I  P  Q  V  R  P  P  P  P  P  M  P  Q  M  P  G  Q  Q  N  L  M  V  N  R  P  P  M  P  P  S  M  G  M  N  S  L  N  L  P  I  P  P  P  P  G  S  Q  F  T  P  L  G  A  P  R  P  F  V  P  H  P  M  S  Q  P  G  M  S  M  V  P  P  P  P  M  P  Q  G  M  P  P  P  P  P  P  E  E  A  P  P  L  P  E  E  P  E  P  K  R  Q  K  L  E  E  S  I  L  I  P  E  D  Q  F  L  A  Q  H  S  :  G  P  A  R  I  N  I  S  V  P  N  T  D  E  G  N  L  K  G  Q  I  L  E  I  T  V  Q  S  L  S  E  T  I  A  S  L  K  E  K  I  S  G  E  I  Q  L  P  A  N  K  Q  K  L </first_frame>
            <second_frame>  *  R  E  D  P  G  R  K  G  P  N  *  V  C  C  L  S  Y  N  R  *  A  H  T  Y  *  *  D  V  *  T  Y  E  D  L  S  H  *  S  K  V  Q  G  T  E  G  Q  D  V  C  E  D  *  G  D  D  S  C  A  G  *  *  D  F  *  E  H  C  W  T  C  K  N  P  S  G  Y  I  W  Y  H  R  R  R  S  F  K  C  G  Q  G  *  D  *  E  K  E  G  R  A  E  A  S  H  M  G  W  S  H  R  *  H  W  S  H  C  E  P  G  N  V  S  E  Q  *  *  S  E  *  C  C  K  *  C  K  K  P  S  W  T  A  G  S  S  T  S  Q  T  W  F  S  I  Y  *  A  T  :  S  S  I  L  L  L  G  L  L  L  R  L  H  L  D  L  L  W  L  T  *  F  L  R  F  G  P  H  L  L  P  C  H  R  C  Q  V  S  K  I  S  W  *  I  A  L  Q  C  L  H  R  W  V  *  I  L  L  T  F  P  F  H  H  L  L  D  H  N  L  L  L  W  E  H  L  D  P  L  F  P  T  R  C  P  S  P  E  C  L  W  S  H  R  L  L  C  P  K  E  C  R  H  P  L  H  Q  R  K  R  L  L  S  L  K  S  Q  S  Q  R  G  K  S  L  K  S  L  F  S  F  L  K  T  S  F  W  L  S  T  R :   D  L  Q  G  S  I  Y  L  C  R  I  P  M  K  G  I  S  K  D  K  F  W  K  L  Q  C  N  L  C  P  K  P  L  P  V  *  K  R  R  F  L  G  R  F  S  C  L  Q  T  N  R  N   </second_frame>
            <third_frame>   E  E  R  I  L  A  E  R  D  P  T  K  Y  V  V  S  P  I  T  G  E  L  I  P  I  N  E  M  S  E  H  M  R  I  S  L  I  D  P  K  Y  K  E  Q  K  D  R  M  F  A  K  I  K  E  T  T  L  A  Q  D  D  E  I  S  R  N  I  V  G  L  A  R  T  R  P  D  I  F  G  T  T  E  E  E  V  S  N  A  V  K  A  E  I  E  K  K  K  E  E  P  K  Q  V  I  W  D  G  H  T  G  S  I  G  R  T  A  N  Q  A  M  S  Q  N  S  D  D  Q  N  D  A  A  N  D  A  R  N  L  P  G  P  Q  A  P  P  P  P  R  P  G  F  P  S  I  R  P  L :   P  V  F  Y  S  W  G  C  C  S  A  S  T  S  T  S  Y  G  *  H  D  S  S  G  S  A  P  T  S  S  H  A  T  D  A  R  S  A  K  S  H  G  E  S  P  S  N  A  S  I  D  G  Y  E  F  S  *  P  S  H  S  T  T  S  W  I  T  I  Y  S  F  G  S  T  S  T  L  C  S  P  P  D  V  P  A  R  N  V  Y  G  P  T  A  S  Y  A  P  R  N  A  A  T  P  S  T  R  G  S  A  S  S  P  *  R  A  R  A  K  E  A  K  A  *  R  V  Y  S  H  S  *  R  P  V  F  G  S  A  L   : G  T  C  K  D  Q  Y  I  C  A  E  Y  R  *  R  E  S  Q  R  T  N  S  G  N  Y  S  A  I  S  V  R  N  H  C  Q  S  K  R  E  D  F  W  G  D  S  A  A  C  K  Q  T  E  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19555" stop="19924"/>
                    <exon start="19975" stop="20390"/>
                    <exon start="20523" stop="20681"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLSLIQSTRNRRTGCLRRLRRRLLRRMMRFLGTLLDLQEPVRIYLVPQKKKFQMRSRLRLRKRRKSRSKSYGMVTQVALVALRTRQCLRTVMIRMMLQMMQETFLDRRLLHLPDLVFHLLGHFQYSTPGVAAPPPPRPPMVNMIPQVRPPPPPMPQMPGQQNLMVNRPPMPPSMGMNSLNLPIPPPPGSQFTPLGAPRPFVPHPMSQPGMSMVPPPPMPQGMPPPPPPEEAPPLPEEPEPKRQKLEESILIPEDQFLAQHSGPARINISVPNTDEGNLKGQILEITVQSLSETIASLKEKISGEIQLPANKQKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19618" e_stop="19929"/>
            <exon e_start="19980" e_stop="20322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.907"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="19618" e_stop="19929" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19930" i_stop="19979" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="19980" e_stop="20322" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19618" stop="19929"/>
              <exon start="19980" stop="20322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAACCTTCCTGGACCGCAGGCTCCTCCACCTCCCAGACCTGGTTTTCCATCTATTAGGCCACTACCTC : TATTCTACTCCTGGGGTTGCTGCTCCGCCTCCACCTCGACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAG</gDNA_template>
            <first_frame> R  R  L  L  R  R  M  M  R  F  L  G  T  L  L  D  L  Q  E  P  V  R  I  Y  L  V  P  Q  K  K  K  F  Q  M  R  S  R  L  R  L  R  K  R  R  K  S  R  S  K  S  Y  G  M  V  T  Q  V  A  L  V  A  L  R  T  R  Q  C  L  R  T  V  M  I  R  M  M  L  Q  M  M  Q  E  T  F  L  D  R  R  L  L  H  L  P  D  L  V  F  H  L  L  G  H  Y  L  :  Y  S  T  P  G  V  A  A  P  P  P  P  R  P  P  M  V  N  M  I  P  Q  V  R  P  P  P  P  P  M  P  Q  M  P  G  Q  Q  N  L  M  V  N  R  P  P  M  P  P  S  M  G  M  N  S  L  N  L  P  I  P  P  P  P  G  S  Q  F  T  P  L  G  A  P  R  P  F  V  P  H  P  M  S  Q  P  G  M  S  M  V  P  P  P  P  M  P  Q  G  M  P  P  P  P  P  P  E  E  A  P  P  L  P  E  E  P  </first_frame>
            <second_frame>  D  D  S  C  A  G  *  *  D  F  *  E  H  C  W  T  C  K  N  P  S  G  Y  I  W  Y  H  R  R  R  S  F  K  C  G  Q  G  *  D  *  E  K  E  G  R  A  E  A  S  H  M  G  W  S  H  R  *  H  W  S  H  C  E  P  G  N  V  S  E  Q  *  *  S  E  *  C  C  K  *  C  K  K  P  S  W  T  A  G  S  S  T  S  Q  T  W  F  S  I  Y  *  A  T  T  S :   I  L  L  L  G  L  L  L  R  L  H  L  D  L  L  W  L  T  *  F  L  R  F  G  P  H  L  L  P  C  H  R  C  Q  V  S  K  I  S  W  *  I  A  L  Q  C  L  H  R  W  V  *  I  L  L  T  F  P  F  H  H  L  L  D  H  N  L  L  L  W  E  H  L  D  P  L  F  P  T  R  C  P  S  P  E  C  L  W  S  H  R  L  L  C  P  K  E  C  R  H  P  L  H  Q  R  K  R  L  L  S  L  K  S  Q </second_frame>
            <third_frame>   T  T  L  A  Q  D  D  E  I  S  R  N  I  V  G  L  A  R  T  R  P  D  I  F  G  T  T  E  E  E  V  S  N  A  V  K  A  E  I  E  K  K  K  E  E  P  K  Q  V  I  W  D  G  H  T  G  S  I  G  R  T  A  N  Q  A  M  S  Q  N  S  D  D  Q  N  D  A  A  N  D  A  R  N  L  P  G  P  Q  A  P  P  P  P  R  P  G  F  P  S  I  R  P  L  P   : L  F  Y  S  W  G  C  C  S  A  S  T  S  T  S  Y  G  *  H  D  S  S  G  S  A  P  T  S  S  H  A  T  D  A  R  S  A  K  S  H  G  E  S  P  S  N  A  S  I  D  G  Y  E  F  S  *  P  S  H  S  T  T  S  W  I  T  I  Y  S  F  G  S  T  S  T  L  C  S  P  P  D  V  P  A  R  N  V  Y  G  P  T  A  S  Y  A  P  R  N  A  A  T  P  S  T  R  G  S  A  S  S  P  *  R  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19618" stop="19929"/>
                    <exon start="19980" stop="20321"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLLRRMMRFLGTLLDLQEPVRIYLVPQKKKFQMRSRLRLRKRRKSRSKSYGMVTQVALVALRTRQCLRTVMIRMMLQMMQETFLDRRLLHLPDLVFHLLGHYLYSTPGVAAPPPPRPPMVNMIPQVRPPPPPMPQMPGQQNLMVNRPPMPPSMGMNSLNLPIPPPPGSQFTPLGAPRPFVPHPMSQPGMSMVPPPPMPQGMPPPPPPEEAPPLPEEP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="20708" PGL_stop="23440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20708" e_stop="21351"/>
            <exon e_start="21438" e_stop="21599"/>
            <exon e_start="21694" e_stop="21896"/>
            <exon e_start="22674" e_stop="22692"/>
            <exon e_start="23427" e_stop="23440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.278" acc_prob="0.228" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.969" acc_prob="0.986" e_score="0.579"/>
          <exon-only e_score="0.429"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="20708" e_stop="21351" e_length="644"/>
          </exon>
          <intron i_serial="1" don_prob="0.278" acc_prob="0.228">
            <gDNA_intron_boundary i_start="21352" i_stop="21437" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21438" e_stop="21599" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.875">
            <gDNA_intron_boundary i_start="21600" i_stop="21693" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="21694" e_stop="21896" e_length="203"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21897" i_stop="22673" i_length="777"/>
          </intron>
          <exon e_serial="4" e_score="0.579">
            <gDNA_exon_boundary e_start="22674" e_stop="22692" e_length="19"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.986">
            <gDNA_intron_boundary i_start="22693" i_stop="23426" i_length="734"/>
          </intron>
          <exon e_serial="5" e_score="0.429">
            <gDNA_exon_boundary e_start="23427" e_stop="23440" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20708" stop="21351"/>
              <exon start="21438" stop="21599"/>
              <exon start="21694" stop="21896"/>
              <exon start="22674" stop="22692"/>
              <exon start="23427" stop="23440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323719" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACTTGTCTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTTGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGTCTTCAAAGGTTTATTTTGCTACTGTTCGGCATATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG : ATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAG : GCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAAC : AGATAGGGTACAAAAAAAG : GGGTAGGGTTAGGC</gDNA_template>
            <first_frame> Q  L  V  S  C  V  L  *  C  C  I  W  R  N  T  W  S  L  T  K  R  T  W  W  E  K  E  M  N  G  E  L  F  G  M  V  F  K  G  L  F  C  Y  C  S  A  Y  L  I  L  V  M  S  F  K  N  S  L  Y  F  F  H  V  I  W  E  I  I  L  V  L  Y  F  S  F  S  F  C  I  *  S  S  L  F  F  K  L  M  A  E  Y  L  L  Q  I  L  A  C  W  *  S  S  M  R  T  T  G  S  L  L  V  L  C  L  *  R  C  H  D  C  G  F  T  H  F  C  L  C  Y  *  F  C  V  C  L  T  T  C  S  C  S  T  L  T  T  A  Q  L  L  F  F  S  I  F  *  V  Q  A  T  L  E  L  F  *  C  L  L  G  K  H  F  L  *  F  W  R  F  P  L  A  I  N  I  S  N  S  S  V  D  F  R  T  Y  F  C  R  R  C  A  C  R  G  G  R  R  L  S  Q  S  H  L  P  L  L  * :   F  I  L  L  V  C  F  D  G  V  C  C  I  P  V  A  P  L  M  C  L  Y  F  I  N  T  A  L  Y  P  C  *  E  M  *  C  V  L  H  L  L  V  V  L  R  G  P  I  S  T  T  K  S  R :   L  S  K  D  V  A  D  D  *  Y  V  F  L  M  *  *  L  E  I  P  Y  F  L  A  D  N  V  P  S  *  Y  S  S  A  M  I  L  I  S  Y  W  L  I  S  L  Y  M  F  M  L  L  C  M  I  L  A  L  V  T  Y  T  *  H  I  H  Q  K   : Q  I  G  Y  K  K  R :   G  R  V  R  </first_frame>
            <second_frame>  N  L  S  L  A  Y  Y  N  V  A  S  G  E  T  L  G  L  S  L  R  E  R  G  G  R  K  R  *  M  G  S  Y  L  A  W  S  S  K  V  Y  F  A  T  V  R  H  I  *  S  L  L  *  V  L  R  I  L  Y  T  S  F  M  L  F  G  R  L  Y  W  S  C  T  L  V  F  L  S  A  F  N  H  L  Y  F  S  S  *  W  L  S  I  Y  Y  R  F  W  H  V  G  D  H  P  *  G  Q  Q  E  V  Y  *  F  Y  V  Y  K  D  A  M  T  V  G  S  H  I  F  V  Y  V  T  N  F  V  F  V  S  P  P  A  V  A  P  P  *  L  Q  L  S  C  Y  F  F  L  S  S  E  S  K  P  P  *  N  F  S  D  V  F  L  A  N  I  S  Y  N  F  G  G  F  P  *  Q  L  T  S  Q  I  L  L  W  T  L  G  P  I  S  V  E  D  V  L  V  V  V  G  D  A  C  P  N  H  T  C  L  F  C   : D  S  F  F  W  F  V  L  M  E  S  A  V  S  P  W  L  L  *  C  A  F  I  L  S  T  Q  L  Y  T  P  V  R  R  C  D  V  F  C  I  C  W  L  C  C  E  V  Q  S  R  Q  Q  K  A   : G  F  R  R  M  L  Q  T  I  D  T  S  F  L  C  N  S  W  K  F  L  I  F  W  Q  I  M  C  H  R  S  I  L  L  L  *  F  L  *  V  I  G  *  S  V  Y  I  C  L  C  F  C  A  *  Y  *  L  *  *  H  I  H  N  I  F  I  K  N  :  R  *  G  T  K  K   : G  V  G  L  G </second_frame>
            <third_frame>   T  C  L  L  R  T  I  M  L  H  L  E  K  H  L  V  S  H  *  E  N  V  V  G  E  R  D  E  W  G  V  I  W  H  G  L  Q  R  F  I  L  L  L  F  G  I  S  N  P  C  Y  E  F  *  E  F  S  I  L  L  S  C  Y  L  G  D  Y  T  G  L  V  L  *  F  F  F  L  H  L  I  I  F  I  F  Q  A  D  G  *  V  S  T  T  D  F  G  M  L  V  I  I  H  E  D  N  R  K  F  T  S  S  M  S  I  K  M  P  *  L  W  V  H  T  F  L  F  M  L  L  I  L  C  L  S  H  H  L  Q  L  L  H  L  N  Y  S  S  V  V  I  F  F  Y  L  L  S  P  S  H  L  R  T  F  L  M  S  S  W  Q  T  F  L  I  I  L  E  V  S  L  S  N  *  H  L  K  F  F  C  G  L  *  D  L  F  L  *  K  M  C  L  S  W  W  E  T  L  V  P  I  T  P  A  S  F  V  :  I  H  S  F  G  L  F  *  W  S  L  L  Y  P  R  G  S  S  D  V  P  L  F  Y  Q  H  S  F  I  P  L  L  G  D  V  M  C  S  A  F  V  G  C  V  A  R  S  N  L  D  N  K  K  Q  :  A  F  E  G  C  C  R  R  L  I  R  L  S  Y  V  I  V  G  N  S  L  F  S  G  R  *  C  A  I  V  V  F  F  C  Y  D  S  Y  K  L  L  V  D  Q  F  I  Y  V  Y  A  F  V  H  D  I  S  S  S  D  I  Y  I  T  Y  S  S  K  T :   D  R  V  Q  K  K  :  G  *  G  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20732" stop="20947"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCIWRNTWSLTKRTWWEKEMNGELFGMVFKGLFCYCSAYLILVMSFKNSLYFFHVIWEIILVLYFSFSFCI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21462" stop="21599"/>
                    <exon start="21694" stop="21771"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSLLYPRGSSDVPLFYQHSFIPLLGDVMCSAFVGCVARSNLDNKKQAFEGCCRRLIRLSYVIVGNSLFSGR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21494" stop="21599"/>
                    <exon start="21694" stop="21800"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CAFILSTQLYTPVRRCDVFCICWLCCEVQSRQQKAGFRRMLQTIDTSFLCNSWKFLIFWQIMCHRSILLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21097" e_stop="21351"/>
            <exon e_start="21518" e_stop="21599"/>
            <exon e_start="21694" e_stop="21901"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.278" acc_prob="0.000" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="0.875" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="21097" e_stop="21351" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="0.278" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21352" i_stop="21517" i_length="166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21518" e_stop="21599" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.875">
            <gDNA_intron_boundary i_start="21600" i_stop="21693" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="21694" e_stop="21901" e_length="208"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21097" stop="21351"/>
              <exon start="21518" stop="21599"/>
              <exon start="21694" stop="21901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337872" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG : CTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAG : GCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAACATTAC</gDNA_template>
            <first_frame> I  L  C  L  S  H  H  L  Q  L  L  H  L  N  Y  S  S  V  V  I  F  F  Y  L  L  S  P  S  H  L  R  T  F  L  M  S  S  W  Q  T  F  L  I  I  L  E  V  S  L  S  N  *  H  L  K  F  F  C  G  L  *  D  L  F  L  *  K  M  C  L  S  W  W  E  T  L  V  P  I  T  P  A  S  F  V  :  L  Y  T  P  V  R  R  C  D  V  F  C  I  C  W  L  C  C  E  V  Q  S  R  Q  Q  K  A   : G  F  R  R  M  L  Q  T  I  D  T  S  F  L  C  N  S  W  K  F  L  I  F  W  Q  I  M  C  H  R  S  I  L  L  L  *  F  L  *  V  I  G  *  S  V  Y  I  C  L  C  F  C  A  *  Y  *  L  *  *  H  I  H  N  I  F  I  K  N  I   </first_frame>
            <second_frame>  F  C  V  C  L  T  T  C  S  C  S  T  L  T  T  A  Q  L  L  F  F  S  I  F  *  V  Q  A  T  L  E  L  F  *  C  L  L  G  K  H  F  L  *  F  W  R  F  P  L  A  I  N  I  S  N  S  S  V  D  F  R  T  Y  F  C  R  R  C  A  C  R  G  G  R  R  L  S  Q  S  H  L  P  L  L  C :   F  I  P  L  L  G  D  V  M  C  S  A  F  V  G  C  V  A  R  S  N  L  D  N  K  K  Q  :  A  F  E  G  C  C  R  R  L  I  R  L  S  Y  V  I  V  G  N  S  L  F  S  G  R  *  C  A  I  V  V  F  F  C  Y  D  S  Y  K  L  L  V  D  Q  F  I  Y  V  Y  A  F  V  H  D  I  S  S  S  D  I  Y  I  T  Y  S  S  K  T  L  </second_frame>
            <third_frame>   F  V  F  V  S  P  P  A  V  A  P  P  *  L  Q  L  S  C  Y  F  F  L  S  S  E  S  K  P  P  *  N  F  S  D  V  F  L  A  N  I  S  Y  N  F  G  G  F  P  *  Q  L  T  S  Q  I  L  L  W  T  L  G  P  I  S  V  E  D  V  L  V  V  V  G  D  A  C  P  N  H  T  C  L  F  C   : A  L  Y  P  C  *  E  M  *  C  V  L  H  L  L  V  V  L  R  G  P  I  S  T  T  K  S  R :   L  S  K  D  V  A  D  D  *  Y  V  F  L  M  *  *  L  E  I  P  Y  F  L  A  D  N  V  P  S  *  Y  S  S  A  M  I  L  I  S  Y  W  L  I  S  L  Y  M  F  M  L  L  C  M  I  L  A  L  V  T  Y  T  *  H  I  H  Q  K  H  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21227" stop="21351"/>
                    <exon start="21518" stop="21599"/>
                    <exon start="21694" stop="21771"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWRFPLAINISNSSVDFRTYFCRRCACRGGRRLSQSHLPLLCFIPLLGDVMCSAFVGCVARSNLDNKKQAFEGCCRRLIRLSYVIVGNSLFSGR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21295" stop="21351"/>
                    <exon start="21518" stop="21599"/>
                    <exon start="21694" stop="21800"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMCLSWWETLVPITPASFVLYTPVRRCDVFCICWLCCEVQSRQQKAGFRRMLQTIDTSFLCNSWKFLIFWQIMCHRSILLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="22910" PGL_stop="21886"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22910" e_stop="22702"/>
            <exon e_start="22312" e_stop="21886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22910" e_stop="22702" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22701" i_stop="22313" i_length="389"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22312" e_stop="21886" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22910" stop="22702"/>
              <exon start="22312" stop="21886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTCTTAAAAAAATAAAAAATATGGGTTTAAAAGGTAAGTTGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAG : CTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGA</gDNA_template>
            <first_frame> Y  S  *  K  N  K  K  Y  G  F  K  R  *  V  D  C  F  S  G  D  E  V  W  R  R  L  I  F  R  Y  F  S  H  *  Y  *  S  G  T  Q  Y  K  S  *  K  Y  R  P  F  W  N  S  R  R  *  K  R  *  D  W  F  D  C  *  L  E  I  Q  R  S :   W  T  R  N  V  Y  E  A  L  N  *  S  C  R  S  S  A  E  I  N  Q  M  E  S  Y  R  R  R  F  I  E  V  V  *  I  L  *  F  Y  N  I  L  *  W  P  V  D  Y  L  D  N  *  L  R  K  E  N  *  R  Y  P  R  T  P  P  S  L  G  C  Y  P  C  H  D  Q  G  Y  R  K  S  P  S  Q  E  I  M  C  V  C  V  M  N  N  L  A  S  S  S  *  H  V  E  *  *  I  I  *  C  M  C  D  Y  V  D  T  H  Y  K  Y  V  C  V  G  V  M  N  I  W  L  V  L  A  S  M  W  N  K  *  C  F  *  * </first_frame>
            <second_frame>  I  L  K  K  I  K  N  M  G  L  K  G  K  L  I  A  S  V  E  M  K  C  G  E  G  S  F  F  D  I  F  H  I  N  T  N  Q  V  P  N  I  S  P  K  N  I  V  H  F  G  I  H  E  G  E  S  V  K  T  G  S  I  V  S  W  K  Y  N  E   : A  G  Q  E  M  Y  M  K  H  L  I  E  A  A  D  P  Q  Q  K  L  I  K  W  K  V  I  E  G  D  L  L  K  L  Y  K  Y  C  N  F  T  T  S  C  D  G  Q  W  T  T  W  T  I  D  Y  E  K  K  T  E  D  T  P  E  P  L  L  H  L  G  V  I  L  A  M  T  K  D  I  E  S  H  L  L  K  K  *  C  V  Y  V  *  *  I  I  W  L  V  L  A  S  M  W  N  N  K  *  Y  N  V  C  V  T  M  *  I  H  I  I  S  M  C  V  L  V  *  *  I  F  G  *  F  *  P  A  C  G  I  S  N  V  F  D   </second_frame>
            <third_frame>   F  L  K  K  *  K  I  W  V  *  K  V  S  *  L  L  Q  W  R  *  S  V  E  K  A  H  F  S  I  F  F  T  L  I  L  I  R  Y  P  I  *  V  L  K  I  S  S  I  L  E  F  T  K  V  K  A  L  R  L  V  R  L  L  V  G  N  T  T  K  :  L  D  K  K  C  I  *  S  T  *  L  K  L  P  I  L  S  R  N  *  S  N  G  K  L  S  K  E  I  Y  *  S  C  I  N  T  V  I  L  Q  H  L  V  M  A  S  G  L  L  G  Q  L  T  T  K  R  K  L  K  I  P  Q  N  P  S  F  T  W  V  L  S  L  P  *  P  R  I  *  K  V  T  F  S  R  N  N  V  C  M  C  D  E  *  F  G  *  F  *  L  A  C  G  I  I  N  N  I  M  Y  V  *  L  C  R  Y  T  L  *  V  C  V  C  W  C  D  E  Y  L  A  S  S  S  Q  H  V  E  *  V  M  F  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22909" stop="22702"/>
                    <exon start="22312" stop="22056"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILKKIKNMGLKGKLIASVEMKCGEGSFFDIFHINTNQVPNISPKNIVHFGIHEGESVKTGSIVSWKYNEAGQEMYMKHLIEAADPQQKLIKWKVIEGDLLKLYKYCNFTTSCDGQWTTWTIDYEKKTEDTPEPLLHLGVILAMTKDIESHLLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="35470" PGL_stop="37815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35470" e_stop="35661"/>
            <exon e_start="37127" e_stop="37180"/>
            <exon e_start="37273" e_stop="37815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.837" acc_prob="0.596" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35470" e_stop="35661" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.837" acc_prob="0.596">
            <gDNA_intron_boundary i_start="35662" i_stop="37126" i_length="1465"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37127" e_stop="37180" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="37181" i_stop="37272" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="37273" e_stop="37815" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35470" stop="35661"/>
              <exon start="37127" stop="37180"/>
              <exon start="37273" stop="37815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326135" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGGAAACATATTTCATTTTTCTTCTGAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTG : CTTCTTGCGAGCTCAACACACCTGGCTCCTTGAATTATCTCTCTTATATTTCGG : GTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACGAAGCCTCCAAGGTTATGGCACCTAATAATAGACAGAAGCAACTTGTTGATAATGGACCTGATGAAGCCTACTTAATCGGGATGCAAAAGTTTTTGGATTATGCTTTTGGAAGAACAGAAGAACTATATGAAATACGATGTCCATGTGTCAAATGTTGCTACACAACTGTAGGAACACGCGAAACAATCGAGTCACATTTGAAAGTTTATGGAATAATTCAAAAGTATACTTTAGGGGTGTCTGGAAATGATTCACCAGGTGCTATAAGTGAGGGACGAGGCAAAGAACAGGATGTTAGATCTATGCGCTCTTTGGGGGCATCTGGAAATGATGTAGGATCCTTCCATCAAAATTCTCTTTACTCT</gDNA_template>
            <first_frame> K  K  E  T  Y  F  I  F  L  L  K  L  K  T  L  F  *  F  S  S  E  I  C  *  E  S  F  S  G  D  G  D  G  Y  S  Q  R  *  V  P  E  L  C  N  R  L  S  K  M  D  Y  H  F  L  A  K  S  K  T  E  *  G  T  L  :  L  L  A  S  S  T  H  L  A  P  *  I  I  S  L  I  F  R  :  V  M  T  P  N  K  R  P  K  K  L  V  D  N  G  P  D  E  A  S  K  V  M  T  P  N  K  R  Q  K  Q  L  V  D  N  G  P  N  E  A  S  K  V  M  T  P  N  K  R  Q  K  Q  L  V  D  N  G  P  D  E  A  S  K  V  M  A  P  N  N  R  Q  K  Q  L  V  D  N  G  P  D  E  A  Y  L  I  G  M  Q  K  F  L  D  Y  A  F  G  R  T  E  E  L  Y  E  I  R  C  P  C  V  K  C  C  Y  T  T  V  G  T  R  E  T  I  E  S  H  L  K  V  Y  G  I  I  Q  K  Y  T  L  G  V  S  G  N  D  S  P  G  A  I  S  E  G  R  G  K  E  Q  D  V  R  S  M  R  S  L  G  A  S  G  N  D  V  G  S  F  H  Q  N  S  L  Y  S </first_frame>
            <second_frame>  K  R  K  H  I  S  F  F  F  *  N  *  K  P  Y  F  D  F  L  Q  R  S  A  E  N  R  F  P  A  T  A  T  A  T  L  N  V  K  F  L  N  C  A  I  V  F  Q  R  W  T  I  I  F  W  R  N  R  K  L  N  E  E  L  C :   F  L  R  A  Q  H  T  W  L  L  E  L  S  L  L  Y  F  G :   *  *  H  L  I  R  D  R  R  N  L  L  I  M  D  L  M  K  P  R  R  L  *  H  L  I  R  D  R  S  N  L  L  I  M  D  L  M  K  P  P  R  L  *  H  L  I  R  D  R  S  N  L  L  I  M  D  L  T  K  P  P  R  L  W  H  L  I  I  D  R  S  N  L  L  I  M  D  L  M  K  P  T  *  S  G  C  K  S  F  W  I  M  L  L  E  E  Q  K  N  Y  M  K  Y  D  V  H  V  S  N  V  A  T  Q  L  *  E  H  A  K  Q  S  S  H  I  *  K  F  M  E  *  F  K  S  I  L  *  G  C  L  E  M  I  H  Q  V  L  *  V  R  D  E  A  K  N  R  M  L  D  L  C  A  L  W  G  H  L  E  M  M  *  D  P  S  I  K  I  L  F  T   </second_frame>
            <third_frame>   K  G  N  I  F  H  F  S  S  E  I  K  N  P  I  L  I  F  F  R  D  L  L  R  I  V  F  R  R  R  R  R  L  L  S  T  L  S  S  *  T  V  Q  S  S  F  K  D  G  L  S  F  S  G  E  I  E  N  *  M  R  N  S   : A  S  C  E  L  N  T  P  G  S  L  N  Y  L  S  Y  I  S   : G  D  D  T  *  *  E  T  E  E  T  C  *  *  W  T  *  *  S  L  E  G  Y  D  T  *  *  E  T  E  A  T  C  *  *  W  T  *  *  S  L  Q  G  Y  D  T  *  *  E  T  E  A  T  C  *  *  W  T  *  R  S  L  Q  G  Y  G  T  *  *  *  T  E  A  T  C  *  *  W  T  *  *  S  L  L  N  R  D  A  K  V  F  G  L  C  F  W  K  N  R  R  T  I  *  N  T  M  S  M  C  Q  M  L  L  H  N  C  R  N  T  R  N  N  R  V  T  F  E  S  L  W  N  N  S  K  V  Y  F  R  G  V  W  K  *  F  T  R  C  Y  K  *  G  T  R  Q  R  T  G  C  *  I  Y  A  L  F  G  G  I  W  K  *  C  R  I  L  P  S  K  F  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37160" stop="37180"/>
                    <exon start="37273" stop="37815"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IISLIFRVMTPNKRPKKLVDNGPDEASKVMTPNKRQKQLVDNGPNEASKVMTPNKRQKQLVDNGPDEASKVMAPNNRQKQLVDNGPDEAYLIGMQKFLDYAFGRTEELYEIRCPCVKCCYTTVGTRETIESHLKVYGIIQKYTLGVSGNDSPGAISEGRGKEQDVRSMRSLGASGNDVGSFHQNSLYS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35507" stop="35661"/>
                    <exon start="37127" stop="37180"/>
                    <exon start="37273" stop="37276"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPYFDFLQRSAENRFPATATATLNVKFLNCAIVFQRWTIIFWRNRKLNEELCFLRAQHTWLLELSLLYFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="50762" PGL_stop="50368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50762" e_stop="50368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="50762" e_stop="50368" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50762" stop="50368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGCAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCAATGGAGTTAATATTGTTGAAGAAGCTTCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAAAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  A  N  E  A  F  Q  V  A  A  M  I  E  K  L  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  R  N  A  E  K  K  S  R  K  S  S  T  I  N  G  V  N  I  V  E  E  A  S  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  Q  M  K  L  F  K  W  L  Q  *  S  R  S  C  L  L  R  G  M  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  G  S  R  L  R  K  I  T  E  M  P  K  R  S  R  V  R  V  Q  Q  S  M  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  T  G  K  S  Q  N  R  P  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  D  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  G  T  S  T  Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  R  E  V  A  S  F  V  E  *  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  A  Q  D  *  G  R  *  Q  K  C  R  K  E  V  A  *  E  F  N  N  Q  W  S  *  Y  C  *  R  S  F  Y  Q  R  Q  K  E  K  E  V  Q  R  A  K  V  R  T  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50762" stop="50370"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVQELQLILHDLIAEDMVANEAFQVAAMIEKLPPSWNDFKNYLKHKRKEMKLEDLVIRLKIEEDNRNAEKKSRKSSTINGVNIVEEASTKDKKRKKSNGQKSEQAKKKFKGNCYNCGKAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="80740" PGL_stop="82577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80740" e_stop="81011"/>
            <exon e_start="81462" e_stop="81859"/>
            <exon e_start="82282" e_stop="82577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80740" e_stop="81011" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="81012" i_stop="81461" i_length="450"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81462" e_stop="81859" e_length="398"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81860" i_stop="82281" i_length="422"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="82282" e_stop="82577" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80740" stop="81011"/>
              <exon start="81462" stop="81859"/>
              <exon start="82282" stop="82577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323496" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATG : GCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAG : GTACATTTACTCAAAGAGAAGTTGATCAACAGAGTAAAAGGGAAGGAAATTTTAGAATTTATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGATTCAAATTTAGCAATGGTGAAGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCGGACAGTCCGCGTTTTACTGACGGAGATTACACTTCATATTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCGAGAAAATGACACATTATGCTTCCCAAAACT</gDNA_template>
            <first_frame> F  L  V  Y  F  Y  F  F  F  S  I  L  N  V  I  L  I  Y  S  T  H  H  K  L  S  *  *  Q  F  N  S  P  I  F  P  I  L  D  P  P  L  N  S  K  Y  Q  K  N  K  I  *  R  I  K  N  G  G  S  K  S  S  *  R  F  *  Q  W  L  Y  T  S  K  *  N  S  S  S  Y  F  *  L  D  I  *  F  F  L  H  F  P  W :   L  C  I  D  G  K  F  R  S  R  S  S  T  E  V  *  K  E  V  I  F  S  T  T  *  S  R  R  Q  *  *  Q  *  *  Q  L  Q  L  S  S  P  K  *  K  E  K  T  I  V  T  K  T  S  *  V  S  *  E  K  F  R  G  R  K  Q  A  *  T  *  K  E  S  T  I  S  *  R  N  W  I  A  A  *  T  S  C  Y  L  V  S  K  S  T  S  T  M  Q  N  E  T  N  *  E  G  L  *  C  P  *  S  *  L  *  *  I  E  D  S  I  *  L  S  L  Q  R  E  W  K  L  E  K  *   : G  T  F  T  Q  R  E  V  D  Q  Q  S  K  R  E  G  N  F  R  I  Y  *  S  T  *  S  C  R  T  S  K  S  F  Y  W  S  *  F  K  F  S  N  G  E  V  Q  A  R  R  C  K  K  *  C  S  *  F  G  Q  S  A  F  Y  *  R  R  L  H  F  I  F  G  A  C  *  F  F  K  C  I  S  D  R  T  L  *  F  F  S  R  K  *  H  I  M  L  P  K  T </first_frame>
            <second_frame>  S  L  S  T  S  T  S  F  S  Q  Y  *  M  *  S  S  F  I  V  L  I  T  N  F  L  S  N  N  S  I  V  Q  F  F  L  F  L  I  L  L  S  T  P  N  T  K  K  I  K  F  R  G  *  K  M  E  V  A  R  V  H  E  G  S  N  N  G  F  I  L  P  N  E  I  L  P  P  T  S  N  W  I  S  N  S  S  S  I  F  H   : G  S  V  S  M  V  N  F  D  Q  D  R  V  Q  K  S  K  K  R  S  F  L  A  Q  L  D  Q  D  D  S  S  S  N  D  D  N  Y  N  Y  H  H  Q  S  E  K  K  R  R  L  L  P  K  Q  V  E  Y  L  E  K  S  F  E  V  E  N  K  L  E  P  E  R  K  V  Q  L  A  K  E  T  G  L  Q  P  R  Q  V  A  I  W  F  Q  N  R  R  A  R  C  K  T  K  Q  I  E  K  D  Y  D  V  L  K  A  S  F  D  E  L  K  T  Q  Y  D  C  L  F  K  E  N  G  S  L  R  N  E  :  V  H  L  L  K  E  K  L  I  N  R  V  K  G  K  E  I  L  E  F  I  S  P  L  D  H  V  E  P  Q  N  P  S  I  G  V  D  S  N  L  A  M  V  K  C  K  Q  E  D  A  K  S  D  V  L  D  S  D  S  P  R  F  T  D  G  D  Y  T  S  Y  L  E  P  A  D  S  S  N  V  F  Q  T  E  H  S  N  F  S  R  E  N  D  T  L  C  F  P  K   </second_frame>
            <third_frame>   P  C  L  L  L  L  L  F  L  N  I  K  C  D  P  H  L  *  Y  S  S  Q  T  F  L  V  T  I  Q  *  S  N  F  S  Y  S  *  S  S  S  Q  L  Q  I  P  K  K  *  N  L  E  D  K  K  W  R  *  Q  E  F  M  K  V  L  T  M  A  L  Y  F  Q  M  K  F  F  L  L  L  L  I  G  Y  L  I  L  P  P  F  S  M  :  A  L  Y  R  W  *  I  S  I  K  I  E  Y  R  S  L  K  R  G  H  F  *  H  N  L  I  K  T  T  V  V  A  M  M  T  I  T  I  I  I  T  K  V  K  R  K  D  D  C  Y  Q  N  K  L  S  I  L  R  K  V  S  R  *  K  T  S  L  N  L  K  G  K  Y  N  *  L  K  K  L  D  C  S  L  D  K  L  L  F  G  F  K  I  D  E  H  D  A  K  R  N  K  L  R  R  I  M  M  S  L  K  L  A  L  M  N  *  R  L  N  M  I  V  S  S  K  R  M  E  A  *  E  M  R :   Y  I  Y  S  K  R  S  *  S  T  E  *  K  G  R  K  F  *  N  L  L  V  H  L  I  M  *  N  L  K  I  L  L  L  E  L  I  Q  I  *  Q  W  *  S  A  S  K  K  M  Q  K  V  M  F  L  I  R  T  V  R  V  L  L  T  E  I  T  L  H  I  W  S  L  L  I  L  Q  M  Y  F  R  Q  N  T  L  I  F  L  E  K  M  T  H  Y  A  S  Q  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80900" stop="81011"/>
                    <exon start="81462" stop="81859"/>
                    <exon start="82282" stop="82575"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEVARVHEGSNNGFILPNEILPPTSNWISNSSSIFHGSVSMVNFDQDRVQKSKKRSFLAQLDQDDSSSNDDNYNYHHQSEKKRRLLPKQVEYLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCKTKQIEKDYDVLKASFDELKTQYDCLFKENGSLRNEVHLLKEKLINRVKGKEILEFISPLDHVEPQNPSIGVDSNLAMVKCKQEDAKSDVLDSDSPRFTDGDYTSYLEPADSSNVFQTEHSNFSRENDTLCFPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="94498" PGL_stop="93300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94498" e_stop="93300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94498" e_stop="93300" e_length="1199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94498" stop="93300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327608" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCTACCATACGCATTGATTCGCCTAGACGACCGGCCAACTCACCGGAGTTTTCCCCGTCGAGTACGGGTCAACGACTTCCTTTTCTCCAGATTTAACAAACTTTCCAGAAATTTCTCGAGAACAGTCTGTTATTTATTTTTATAATATATATATACAAACACATATATTCCTGCTTCGGTTTCATCAACGATACAGAGAAAAAAAGCACAGTGAAAGAGAAGAGAAGAAGATATGAGTGTTGATTACTATAAGACACTGAAAGTGTCACGTAATGCAAGTGAAGAAGATTTGAAGAAATCGTATAAGAGATTGGCCATGAAATGGCATCCGGATAAGAATAGTGAGAATAAGAAGGAAGCTGAAGCGAAATTCAAGCAGATATCTGAGGCTTATGATGTGCTGAGTGATCCTCAGAAGCGTCAGATCTATGATATATACGGTGATGAGGCACTGAAATCTGGTCAATTCGATCCATCCTCACCTAGTGATAGAAGAGGATTTAAGTTCAATTCGCGTGATGCGGAAGATATTTTCGCGGAATTTTTTGGTGGATCGGATGGGTATAGTAGGAGTACTGGTGGTACTGTACGGATTAGGAAAGCTGCGCCGGTGGAGAACAAGTTGCCGTGTACCTTGGAGGAGTTATACAAGGGCTCTAAGAGGAAAATGAAGATTTCAAGGATTGTTCTTGATGGCGCTGGGTAAGTAAATACCTTACATTATACAAACACCAGCTAATATTTCTGAATAACATCCTCTATCCATATTTGCTATTAGAATCTGTTATCTAGTTTTCTCAATAAGAAATTTACATTACTTTGCGGAATGAATTACATCTGGCCTATTGACGGGGATAATTCGAGTTGATAGTAGTGATTTGATCTTTTGTGTGGTGAATTTGACAGAACATTGCCTAGTAAATCATGTCCATCAAGGTTGGTTATAGTTTTCATATGAATCTGGATCCTTAGGAAGCTACTCCCATCTCTCAACCACTTGAAACTGTGCCTTTGAGATTATCCCACAGTAATGAATCAGAACTGTTCATCATATGGGGGTTATGCATGAATTATATAGAATGAGTGAATGATATTGGTGACTCGAGGGAAAATTCTTCTTTGATTATCATTGGTAAAAGTACATTTAACTTAAAATTATGTGTATTAGTTGGGATAGCAACGATGCACGAATATA</gDNA_template>
            <first_frame> F  L  Y  H  T  H  *  F  A  *  T  T  G  Q  L  T  G  V  F  P  V  E  Y  G  S  T  T  S  F  S  P  D  L  T  N  F  P  E  I  S  R  E  Q  S  V  I  Y  F  Y  N  I  Y  I  Q  T  H  I  F  L  L  R  F  H  Q  R  Y  R  E  K  K  H  S  E  R  E  E  K  K  I  *  V  L  I  T  I  R  H  *  K  C  H  V  M  Q  V  K  K  I  *  R  N  R  I  R  D  W  P  *  N  G  I  R  I  R  I  V  R  I  R  R  K  L  K  R  N  S  S  R  Y  L  R  L  M  M  C  *  V  I  L  R  S  V  R  S  M  I  Y  T  V  M  R  H  *  N  L  V  N  S  I  H  P  H  L  V  I  E  E  D  L  S  S  I  R  V  M  R  K  I  F  S  R  N  F  L  V  D  R  M  G  I  V  G  V  L  V  V  L  Y  G  L  G  K  L  R  R  W  R  T  S  C  R  V  P  W  R  S  Y  T  R  A  L  R  G  K  *  R  F  Q  G  L  F  L  M  A  L  G  K  *  I  P  Y  I  I  Q  T  P  A  N  I  S  E  *  H  P  L  S  I  F  A  I  R  I  C  Y  L  V  F  S  I  R  N  L  H  Y  F  A  E  *  I  T  S  G  L  L  T  G  I  I  R  V  D  S  S  D  L  I  F  C  V  V  N  L  T  E  H  C  L  V  N  H  V  H  Q  G  W  L  *  F  S  Y  E  S  G  S  L  G  S  Y  S  H  L  S  T  T  *  N  C  A  F  E  I  I  P  Q  *  *  I  R  T  V  H  H  M  G  V  M  H  E  L  Y  R  M  S  E  *  Y  W  *  L  E  G  K  F  F  F  D  Y  H  W  *  K  Y  I  *  L  K  I  M  C  I  S  W  D  S  N  D  A  R  I   </first_frame>
            <second_frame>  F  S  T  I  R  I  D  S  P  R  R  P  A  N  S  P  E  F  S  P  S  S  T  G  Q  R  L  P  F  L  Q  I  *  Q  T  F  Q  K  F  L  E  N  S  L  L  F  I  F  I  I  Y  I  Y  K  H  I  Y  S  C  F  G  F  I  N  D  T  E  K  K  S  T  V  K  E  K  R  R  R  Y  E  C  *  L  L  *  D  T  E  S  V  T  *  C  K  *  R  R  F  E  E  I  V  *  E  I  G  H  E  M  A  S  G  *  E  *  *  E  *  E  G  S  *  S  E  I  Q  A  D  I  *  G  L  *  C  A  E  *  S  S  E  A  S  D  L  *  Y  I  R  *  *  G  T  E  I  W  S  I  R  S  I  L  T  *  *  *  K  R  I  *  V  Q  F  A  *  C  G  R  Y  F  R  G  I  F  W  W  I  G  W  V  *  *  E  Y  W  W  Y  C  T  D  *  E  S  C  A  G  G  E  Q  V  A  V  Y  L  G  G  V  I  Q  G  L  *  E  E  N  E  D  F  K  D  C  S  *  W  R  W  V  S  K  Y  L  T  L  Y  K  H  Q  L  I  F  L  N  N  I  L  Y  P  Y  L  L  L  E  S  V  I  *  F  S  Q  *  E  I  Y  I  T  L  R  N  E  L  H  L  A  Y  *  R  G  *  F  E  L  I  V  V  I  *  S  F  V  W  *  I  *  Q  N  I  A  *  *  I  M  S  I  K  V  G  Y  S  F  H  M  N  L  D  P  *  E  A  T  P  I  S  Q  P  L  E  T  V  P  L  R  L  S  H  S  N  E  S  E  L  F  I  I  W  G  L  C  M  N  Y  I  E  *  V  N  D  I  G  D  S  R  E  N  S  S  L  I  I  I  G  K  S  T  F  N  L  K  L  C  V  L  V  G  I  A  T  M  H  E  Y  </second_frame>
            <third_frame>   S  L  P  Y  A  L  I  R  L  D  D  R  P  T  H  R  S  F  P  R  R  V  R  V  N  D  F  L  F  S  R  F  N  K  L  S  R  N  F  S  R  T  V  C  Y  L  F  L  *  Y  I  Y  T  N  T  Y  I  P  A  S  V  S  S  T  I  Q  R  K  K  A  Q  *  K  R  R  E  E  D  M  S  V  D  Y  Y  K  T  L  K  V  S  R  N  A  S  E  E  D  L  K  K  S  Y  K  R  L  A  M  K  W  H  P  D  K  N  S  E  N  K  K  E  A  E  A  K  F  K  Q  I  S  E  A  Y  D  V  L  S  D  P  Q  K  R  Q  I  Y  D  I  Y  G  D  E  A  L  K  S  G  Q  F  D  P  S  S  P  S  D  R  R  G  F  K  F  N  S  R  D  A  E  D  I  F  A  E  F  F  G  G  S  D  G  Y  S  R  S  T  G  G  T  V  R  I  R  K  A  A  P  V  E  N  K  L  P  C  T  L  E  E  L  Y  K  G  S  K  R  K  M  K  I  S  R  I  V  L  D  G  A  G  *  V  N  T  L  H  Y  T  N  T  S  *  Y  F  *  I  T  S  S  I  H  I  C  Y  *  N  L  L  S  S  F  L  N  K  K  F  T  L  L  C  G  M  N  Y  I  W  P  I  D  G  D  N  S  S  *  *  *  *  F  D  L  L  C  G  E  F  D  R  T  L  P  S  K  S  C  P  S  R  L  V  I  V  F  I  *  I  W  I  L  R  K  L  L  P  S  L  N  H  L  K  L  C  L  *  D  Y  P  T  V  M  N  Q  N  C  S  S  Y  G  G  Y  A  *  I  I  *  N  E  *  M  I  L  V  T  R  G  K  I  L  L  *  L  S  L  V  K  V  H  L  T  *  N  Y  V  Y  *  L  G  *  Q  R  C  T  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94280" stop="93789"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRREEDMSVDYYKTLKVSRNASEEDLKKSYKRLAMKWHPDKNSENKKEAEAKFKQISEAYDVLSDPQKRQIYDIYGDEALKSGQFDPSSPSDRRGFKFNSRDAEDIFAEFFGGSDGYSRSTGGTVRIRKAAPVENKLPCTLEELYKGSKRKMKISRIVLDGAG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94468" stop="94259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTGQLTGVFPVEYGSTTSFSPDLTNFPEISREQSVIYFYNIYIQTHIFLLRFHQRYREKKHSEREEKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="95016" PGL_stop="98258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95016" e_stop="95196"/>
            <exon e_start="96853" e_stop="96915"/>
            <exon e_start="97472" e_stop="97549"/>
            <exon e_start="97818" e_stop="98035"/>
            <exon e_start="98211" e_stop="98258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95016" e_stop="95196" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95197" i_stop="96852" i_length="1656"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96853" e_stop="96915" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.973">
            <gDNA_intron_boundary i_start="96916" i_stop="97471" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97472" e_stop="97549" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="97550" i_stop="97817" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97818" e_stop="98035" e_length="218"/>
          </exon>
          <intron i_serial="4" don_prob="0.771" acc_prob="0.989">
            <gDNA_intron_boundary i_start="98036" i_stop="98210" i_length="175"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98211" e_stop="98258" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95016" stop="95196"/>
              <exon start="96853" stop="96915"/>
              <exon start="97472" stop="97549"/>
              <exon start="97818" stop="98035"/>
              <exon start="98211" stop="98258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATTGATGTCTGTAGTTACTAGTGTTATTACTCCAGCCATAAAAAGCAAATCTTGTTGTTTCATGAGTTTATTGCATTATCCACCATTGATGACTGCTAGCTACCGTTGTTTTCGTGCCCGAAGTAGGCTTTCGTGCTGTAATAGTCACGCTGATGATGATATGCGTGCCCTCTTTCAG : ATTCTGCCATGTGACTTACGGGACACCCTTTTGTGTGACCCCAGCCAAGATCAACTAGTAGAG : GTGATTTTAGATTTAGGCTGTTTGCCACAAGCACATTACATAAATGATTCTGGGAGGCGTTACCTTCGAGATACTGAG : GTCTCTATGGAAGAAATACAATGTGTCCTCAAGGAAATTGGACAATTTGGAGGAGATAACAGAGCTGGCATTGAGGGTACTTTGCATCGCATTTCCGCAATTAGGAATAGGAAGGGTGAAGTCATTGGTTTGACTTGCCGAGTTGGCAGGGCCAGAGGACAGATTGACATGGTGCGGGACTTGCTTGATTTTGGTGAAAGCATCTTGTTTGTTGGACG : ACCTGGTGTTGGTAAAACTACGGTTGTGCGAGAGATATCTCGTGTCTT</gDNA_template>
            <first_frame> F  I  D  V  C  S  Y  *  C  Y  Y  S  S  H  K  K  Q  I  L  L  F  H  E  F  I  A  L  S  T  I  D  D  C  *  L  P  L  F  S  C  P  K  *  A  F  V  L  *  *  S  R  *  *  *  Y  A  C  P  L  S   : D  S  A  M  *  L  T  G  H  P  F  V  *  P  Q  P  R  S  T  S  R   : G  D  F  R  F  R  L  F  A  T  S  T  L  H  K  *  F  W  E  A  L  P  S  R  Y  *   : G  L  Y  G  R  N  T  M  C  P  Q  G  N  W  T  I  W  R  R  *  Q  S  W  H  *  G  Y  F  A  S  H  F  R  N  *  E  *  E  G  *  S  H  W  F  D  L  P  S  W  Q  G  Q  R  T  D  *  H  G  A  G  L  A  *  F  W  *  K  H  L  V  C  W  T  :  T  W  C  W  *  N  Y  G  C  A  R  D  I  S  C  L </first_frame>
            <second_frame>  L  L  M  S  V  V  T  S  V  I  T  P  A  I  K  S  K  S  C  C  F  M  S  L  L  H  Y  P  P  L  M  T  A  S  Y  R  C  F  R  A  R  S  R  L  S  C  C  N  S  H  A  D  D  D  M  R  A  L  F  Q  :  I  L  P  C  D  L  R  D  T  L  L  C  D  P  S  Q  D  Q  L  V  E  :  V  I  L  D  L  G  C  L  P  Q  A  H  Y  I  N  D  S  G  R  R  Y  L  R  D  T  E  :  V  S  M  E  E  I  Q  C  V  L  K  E  I  G  Q  F  G  G  D  N  R  A  G  I  E  G  T  L  H  R  I  S  A  I  R  N  R  K  G  E  V  I  G  L  T  C  R  V  G  R  A  R  G  Q  I  D  M  V  R  D  L  L  D  F  G  E  S  I  L  F  V  G  R :   P  G  V  G  K  T  T  V  V  R  E  I  S  R  V   </second_frame>
            <third_frame>   Y  *  C  L  *  L  L  V  L  L  L  Q  P  *  K  A  N  L  V  V  S  *  V  Y  C  I  I  H  H  *  *  L  L  A  T  V  V  F  V  P  E  V  G  F  R  A  V  I  V  T  L  M  M  I  C  V  P  S  F  R :   F  C  H  V  T  Y  G  T  P  F  C  V  T  P  A  K  I  N  *  *  R :   *  F  *  I  *  A  V  C  H  K  H  I  T  *  M  I  L  G  G  V  T  F  E  I  L  R :   S  L  W  K  K  Y  N  V  S  S  R  K  L  D  N  L  E  E  I  T  E  L  A  L  R  V  L  C  I  A  F  P  Q  L  G  I  G  R  V  K  S  L  V  *  L  A  E  L  A  G  P  E  D  R  L  T  W  C  G  T  C  L  I  L  V  K  A  S  C  L  L  D   : D  L  V  L  V  K  L  R  L  C  E  R  Y  L  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95017" stop="95196"/>
                    <exon start="96853" stop="96915"/>
                    <exon start="97472" stop="97549"/>
                    <exon start="97818" stop="98035"/>
                    <exon start="98211" stop="98256"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLMSVVTSVITPAIKSKSCCFMSLLHYPPLMTASYRCFRARSRLSCCNSHADDDMRALFQILPCDLRDTLLCDPSQDQLVEVILDLGCLPQAHYINDSGRRYLRDTEVSMEEIQCVLKEIGQFGGDNRAGIEGTLHRISAIRNRKGEVIGLTCRVGRARGQIDMVRDLLDFGESILFVGRPGVGKTTVVREISRV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="101102" PGL_stop="102419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101102" e_stop="101182"/>
            <exon e_start="101978" e_stop="102419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101102" e_stop="101182" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.952">
            <gDNA_intron_boundary i_start="101183" i_stop="101977" i_length="795"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="101978" e_stop="102419" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101102" stop="101182"/>
              <exon start="101978" stop="102419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACTCCGCAATTACAGGTTGTGATTGAGAGATGGAGAACAAAAGCCTAAATACAATTAACTTCTGCTACTGCTCTACTG : GAGAAAAATGTATGTGTACATTTGAAAACTTCATATGGAGCTTGCAATGTGATGGAAATGGATGTTGAAAATCTTTGCGGAGGTTGAAATTCATCTTTTCACAAAGTTGGCCTTCTAACAAGCATAGTAAGTACTACGTTTTCACTGATTTTCATACTTTGGGTAAGTGAGATGAAAACTCTCTTCTTCCTTTCTTTGTCATTTCACTTAATTTTGTTATATAAGTTGATCATCTACATTTATCTTTCTGTCATTAAATTATTTATTTCGTTTACTTTGTAAAAACTTAGTTTTTCATGTTTCATATCATACCTAGCTAGCTACAATCTTTGACAAAAAAAAATATTTAGATAATTCAGATCTAAGTATTATGTTGATTACCTAATTTTTAAGTGCATTCACCTAAGTACCATCTCAAAGTGTACAAAAAAAAAACATCCAC</gDNA_template>
            <first_frame> R  T  P  Q  L  Q  V  V  I  E  R  W  R  T  K  A  *  I  Q  L  T  S  A  T  A  L  L  :  E  K  N  V  C  V  H  L  K  T  S  Y  G  A  C  N  V  M  E  M  D  V  E  N  L  C  G  G  *  N  S  S  F  H  K  V  G  L  L  T  S  I  V  S  T  T  F  S  L  I  F  I  L  W  V  S  E  M  K  T  L  F  F  L  S  L  S  F  H  L  I  L  L  Y  K  L  I  I  Y  I  Y  L  S  V  I  K  L  F  I  S  F  T  L  *  K  L  S  F  S  C  F  I  S  Y  L  A  S  Y  N  L  *  Q  K  K  I  F  R  *  F  R  S  K  Y  Y  V  D  Y  L  I  F  K  C  I  H  L  S  T  I  S  K  C  T  K  K  K  H  P  </first_frame>
            <second_frame>  E  L  R  N  Y  R  L  *  L  R  D  G  E  Q  K  P  K  Y  N  *  L  L  L  L  L  Y  W :   R  K  M  Y  V  Y  I  *  K  L  H  M  E  L  A  M  *  W  K  W  M  L  K  I  F  A  E  V  E  I  H  L  F  T  K  L  A  F  *  Q  A  *  *  V  L  R  F  H  *  F  S  Y  F  G  *  V  R  *  K  L  S  S  S  F  L  C  H  F  T  *  F  C  Y  I  S  *  S  S  T  F  I  F  L  S  L  N  Y  L  F  R  L  L  C  K  N  L  V  F  H  V  S  Y  H  T  *  L  A  T  I  F  D  K  K  K  Y  L  D  N  S  D  L  S  I  M  L  I  T  *  F  L  S  A  F  T  *  V  P  S  Q  S  V  Q  K  K  N  I  H </second_frame>
            <third_frame>   N  S  A  I  T  G  C  D  *  E  M  E  N  K  S  L  N  T  I  N  F  C  Y  C  S  T   : G  E  K  C  M  C  T  F  E  N  F  I  W  S  L  Q  C  D  G  N  G  C  *  K  S  L  R  R  L  K  F  I  F  S  Q  S  W  P  S  N  K  H  S  K  Y  Y  V  F  T  D  F  H  T  L  G  K  *  D  E  N  S  L  L  P  F  F  V  I  S  L  N  F  V  I  *  V  D  H  L  H  L  S  F  C  H  *  I  I  Y  F  V  Y  F  V  K  T  *  F  F  M  F  H  I  I  P  S  *  L  Q  S  L  T  K  K  N  I  *  I  I  Q  I  *  V  L  C  *  L  P  N  F  *  V  H  S  P  K  Y  H  L  K  V  Y  K  K  K  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102065" stop="102259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSFHKVGLLTSIVSTTFSLIFILWVSEMKTLFFLSLSFHLILLYKLIIYIYLSVIKLFISFTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="103110" PGL_stop="103386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103110" e_stop="103386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103110" e_stop="103386" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103110" stop="103386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCATCATCCACAGGTACATGATCAAAACCAGCATGTTTTGAGGGCTTTGAGAAACCAAAAATGTTTCGAAAACGGTGAAGTTGAAGGAACTACTGACCTACATGACTAGAAGATACATACTGAGTATCCCAACAAAAAGGTAGCAAAAGAAATTCTATGATCATCCAAACATTGTAATGGATCAACAGATACGTTCTTGTGAGTTCAATTGAATCCATTTGGTCTCTCTTTTTATGTTACAAAATATATAAGTATCAGATATTAGTACAAGTTA</gDNA_template>
            <first_frame> F  A  S  S  T  G  T  *  S  K  P  A  C  F  E  G  F  E  K  P  K  M  F  R  K  R  *  S  *  R  N  Y  *  P  T  *  L  E  D  T  Y  *  V  S  Q  Q  K  G  S  K  R  N  S  M  I  I  Q  T  L  *  W  I  N  R  Y  V  L  V  S  S  I  E  S  I  W  S  L  F  L  C  Y  K  I  Y  K  Y  Q  I  L  V  Q  V  </first_frame>
            <second_frame>  L  H  H  P  Q  V  H  D  Q  N  Q  H  V  L  R  A  L  R  N  Q  K  C  F  E  N  G  E  V  E  G  T  T  D  L  H  D  *  K  I  H  T  E  Y  P  N  K  K  V  A  K  E  I  L  *  S  S  K  H  C  N  G  S  T  D  T  F  L  *  V  Q  L  N  P  F  G  L  S  F  Y  V  T  K  Y  I  S  I  R  Y  *  Y  K  L </second_frame>
            <third_frame>   C  I  I  H  R  Y  M  I  K  T  S  M  F  *  G  L  *  E  T  K  N  V  S  K  T  V  K  L  K  E  L  L  T  Y  M  T  R  R  Y  I  L  S  I  P  T  K  R  *  Q  K  K  F  Y  D  H  P  N  I  V  M  D  Q  Q  I  R  S  C  E  F  N  *  I  H  L  V  S  L  F  M  L  Q  N  I  *  V  S  D  I  S  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0098C07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="118188" PGL_stop="112772"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118188" e_stop="117806"/>
            <exon e_start="117084" e_stop="117001"/>
            <exon e_start="116906" e_stop="116565"/>
            <exon e_start="115022" e_stop="114887"/>
            <exon e_start="114623" e_stop="114461"/>
            <exon e_start="114153" e_stop="114011"/>
            <exon e_start="113673" e_stop="113479"/>
            <exon e_start="113307" e_stop="113185"/>
            <exon e_start="113108" e_stop="112772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.968" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.988"/>
          <exon-intron don_prob="0.995" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="118188" e_stop="117806" e_length="383"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.994">
            <gDNA_intron_boundary i_start="117805" i_stop="117085" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117084" e_stop="117001" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.966">
            <gDNA_intron_boundary i_start="117000" i_stop="116907" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116906" e_stop="116565" e_length="342"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="0.924">
            <gDNA_intron_boundary i_start="116564" i_stop="115023" i_length="1542"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115022" e_stop="114887" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="1.000">
            <gDNA_intron_boundary i_start="114886" i_stop="114624" i_length="263"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="114623" e_stop="114461" e_length="163"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114460" i_stop="114154" i_length="307"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114153" e_stop="114011" e_length="143"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.900">
            <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="113673" e_stop="113479" e_length="195"/>
          </exon>
          <intron i_serial="7" don_prob="0.958" acc_prob="0.838">
            <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="113307" e_stop="113185" e_length="123"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.819">
            <gDNA_intron_boundary i_start="113184" i_stop="113109" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="113108" e_stop="112772" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118188" stop="117806"/>
              <exon start="117084" stop="117001"/>
              <exon start="116906" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114461"/>
              <exon start="114153" stop="114011"/>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117960" stop="117806"/>
              <exon start="117084" stop="117001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113658" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335620" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCTTCTCTGAAAATCATGTAACATAATTCCAAGAATATATCCTCTATTTTGTTTTTTTGAGATAATTAATGGCTTCTCCACCTCTTCAAGCTTCAAAATTCCTCAAAAATCAATAGATTTTTCTCTCTCTAAAAAAAAATGATATAGATTTTTTTTTGTTGTTGTTGTTGATATGATATAGTAGTTGTTGAGAAGCATATGATTCTGCTGAAATGGGAGCATGTGTATCGCGTCCAGATAGTTGTGTTGGAGGTAAATTGAAAGGTTCAAATAAGTTTAGGAAAAAAAGGGGGGGAAGAAGAAGAAGGAAGAAATCTAACTCACTTCATAAAATTGATGAGGCGTTTCCTTTGGATAACTATAATCCAACATTTCAGG : GACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATG : ATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTAC : TTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAG : GGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAG : TCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGA : AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG : GGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAG : GGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGGACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTCAATGTTTCATCAAACCGCAGTCGATCTGTTTTTATTTTGG</gDNA_template>
            <first_frame> F  L  L  L  *  K  S  C  N  I  I  P  R  I  Y  P  L  F  C  F  F  E  I  I  N  G  F  S  T  S  S  S  F  K  I  P  Q  K  S  I  D  F  S  L  S  K  K  K  *  Y  R  F  F  F  V  V  V  V  D  M  I  *  *  L  L  R  S  I  *  F  C  *  N  G  S  M  C  I  A  S  R  *  L  C  W  R  *  I  E  R  F  K  *  V  *  E  K  K  G  G  K  K  K  K  E  E  I  *  L  T  S  *  N  *  *  G  V  S  F  G  *  L  *  S  N  I  S  G :   T  D  *  G  G  M  V  *  F  C  C  N  I  *  I  *  L  Q  *  *  R  F  P  E  C  S  *  * :   C  T  F  C  Q  Q  L  *  L  W  A  D  *  C  S  F  D  Q  R  Y  *  Q  W  G  C  *  F  K  P  R  W  T  S  Q  *  G  T  A  C  F  P  *  *  D  L  V  L  G  K  Y  R  *  W  Q  G  G  W  F  V  G  E  L  W  N  S  F  K  Q  L  S  A  P  S  Y  L  H  C  C  A  C  *  E  E  I  S  *  L  *  S  S  K  F  K  E  E  S  G  P  K  A  S  L  Q  M  E  R  W  K  S  L  C  H  S  T :   F  I  *  N  P  A  S  K  A  H  S  W  *  P  S  T  S  L  P  V  G  E  *  I  A  *  *  L  V  L  Y  *  T  K  Y  L  Q  G  P  G  R  K  L  F  Q  :  G  Q  K  E  R  V  C  G  K  *  C  C  I  L  S  F  W  R  *  R  I  F  I  S  K  K  N  *  S  H  C  S  T  C  G  T  S  C  H  *  T  L  W  D  T  S  T  H  S  C  S  E  H  S   : V  S  F  L  Q  V  P  L  Y  P  T  A  I  F  Q  G  E  T  D  G  K  G  M  S  F  V  L  Y  F  K  L  S  E  S  Y  A  K  E  L  P  S  Y  F  Q  E  N  I  R  :  R  V  M  D  D  E  V  E  K  V  K  A  F  P  M  D  G  T  V  P  F  R  E  R  L  K  I  L  G  R  V  A  N  M  E  D  L  R  L  S  A  A  E  R  K  L  M  Q  A  Y  N  E  K  P  V  L  S  R  P  Q  H  E  F  Y  K  :  G  E  N  Y  F  E  I  D  I  D  M  H  R  F  S  Y  I  S  R  K  G  C  E  T  F  L  D  R  L  K  L  C  S  L  D  V  G  L  T  I  Q  :  G  N  K  I  E  E  L  P  E  Q  I  L  C  C  I  R  L  N  E  I  D  Y  V  N  Y  Q  Q  L  G  A  N  N  E  T  P  *  I  G  A  L  A  V  Y  S  T  G  Y  G  K  *  V  K  K  L  L  L  A  S  C  V  P  P  F  Y  L  N  C  Q  I  S  E  K  Q  M  A  Y  R  E  S  S  R  Y  L  N  L  W  T  R  M  R  K  *  S  S  G  V  L  C  F  N  V  S  S  N  R  S  R  S  V  F  I  L  </first_frame>
            <second_frame>  F  F  F  S  E  N  H  V  T  *  F  Q  E  Y  I  L  Y  F  V  F  L  R  *  L  M  A  S  P  P  L  Q  A  S  K  F  L  K  N  Q  *  I  F  L  S  L  K  K  N  D  I  D  F  F  L  L  L  L  L  I  *  Y  S  S  C  *  E  A  Y  D  S  A  E  M  G  A  C  V  S  R  P  D  S  C  V  G  G  K  L  K  G  S  N  K  F  R  K  K  R  G  G  R  R  R  R  K  K  S  N  S  L  H  K  I  D  E  A  F  P  L  D  N  Y  N  P  T  F  Q   : G  R  I  E  E  A  W  F  D  S  A  A  I  F  E  S  D  C  S  D  E  D  F  Q  S  V  P  D   : D  V  L  S  V  N  S  F  D  C  G  R  T  S  V  A  S  I  K  D  T  N  N  G  D  V  N  L  N  P  D  G  P  H  S  E  V  R  P  V  F  L  D  E  I  S  S  S  E  N  I  G  S  G  R  E  D  G  L  S  E  N  C  G  I  L  S  N  N  C  L  P  R  L  T  S  T  V  V  P  V  E  K  R  S  L  S  S  S  P  P  S  S  R  K  K  A  D  L  K  L  P  F  K  W  K  D  G  N  P  C  A  T  L   : L  S  S  K  T  L  L  Q  R  P  I  A  G  S  Q  V  P  V  C  P  L  E  N  K  L  P  D  S  W  S  Y  I  E  P  N  T  F  R  V  R  G  G  N  Y  F  R :   D  K  K  K  E  F  A  A  N  N  A  A  Y  Y  P  F  G  V  D  V  F  L  S  Q  R  K  I  D  H  I  A  Q  L  V  E  L  P  V  I  E  H  S  G  T  L  P  P  I  L  V  V  N  I  Q  :  S  L  F  Y  R  C  H  Y  I  L  P  Q  F  F  R  V  K  L  T  V  K  E  *  V  L  S  C  T  L  S  F  P  K  V  M  Q  K  N  F  L  L  I  F  R  R  T  S  E :   E  *  W  M  M  K  W  K  K  *  R  L  F  Q  W  M  V  L  F  R  L  G  K  G  *  R  Y  *  V  V  *  Q  I  W  R  T  F  G  *  V  Q  Q  R  G  S  *  C  R  H  T  M  K  N  L  F  F  H  V  L  N  M  S  S  I  R :   E  K  I  I  L  R  L  I  L  I  C  T  D  S  V  T  S  L  E  R  V  A  K  H  S  *  I  G  *  S  Y  A  P  W  M  *  A  S  Q  F  R :   V  T  K  L  K  N  C  R  S  R  S  Y  V  V  Y  D  *  M  K  S  T  M  *  I  I  S  N  S  G  L  I  M  K  P  L  E  *  V  H  *  Q  C  I  P  P  D  M  A  N  K  *  R  N  Y  C  *  L  V  V  S  L  P  F  T  S  T  V  K  S  L  R  S  K  W  L  I  E  R  V  V  D  I  *  I  Y  G  Q  G  *  E  N  S  R  V  V  F  F  V  S  M  F  H  Q  T  A  V  D  L  F  L  F  W </second_frame>
            <third_frame>   S  S  S  L  K  I  M  *  H  N  S  K  N  I  S  S  I  L  F  F  *  D  N  *  W  L  L  H  L  F  K  L  Q  N  S  S  K  I  N  R  F  F  S  L  *  K  K  M  I  *  I  F  F  C  C  C  C  *  Y  D  I  V  V  V  E  K  H  M  I  L  L  K  W  E  H  V  Y  R  V  Q  I  V  V  L  E  V  N  *  K  V  Q  I  S  L  G  K  K  G  G  E  E  E  E  G  R  N  L  T  H  F  I  K  L  M  R  R  F  L  W  I  T  I  I  Q  H  F  R  :  D  G  L  R  R  H  G  L  I  L  L  Q  Y  L  N  L  I  A  V  M  K  I  S  R  V  F  L  M  :  M  Y  F  L  S  T  A  L  I  V  G  G  L  V  *  L  R  S  K  I  L  T  M  G  M  L  I  *  T  P  M  D  L  T  V  R  Y  G  L  F  S  L  M  R  S  R  P  R  K  I  *  V  V  A  G  R  M  V  C  R  R  T  V  E  F  F  Q  T  T  V  C  P  V  L  P  P  L  L  C  L  L  R  R  D  L  L  A  L  V  L  Q  V  Q  G  R  K  R  T  *  S  F  P  S  N  G  K  M  E  I  L  V  P  L  Y  :  F  H  L  K  P  C  F  K  G  P  *  L  V  A  K  Y  Q  F  A  R  W  R  I  N  C  L  I  V  G  P  I  L  N  Q  I  P  S  G  S  G  E  E  T  I  S   : G  T  K  R  K  S  L  R  Q  I  M  L  H  I  I  L  L  A  L  T  Y  F  Y  L  K  E  K  L  I  T  L  L  N  L  W  N  F  L  S  L  N  T  L  G  H  F  H  P  F  L  *  *  T  F  S :   L  F  F  T  G  A  I  I  S  Y  R  N  F  S  G  *  N  *  R  *  R  N  E  F  C  L  V  L  *  A  F  R  K  L  C  K  R  T  S  F  L  F  S  G  E  H  Q   : K  S  N  G  *  *  S  G  K  S  E  G  F  S  N  G  W  Y  C  S  V  *  G  K  V  K  D  I  R  S  C  S  K  Y  G  G  P  S  V  K  C  S  R  E  E  A  D  A  G  I  Q  *  K  T  C  S  F  T  S  S  T  *  V  L  *   : G  R  K  L  F  *  D  *  Y  *  Y  A  Q  I  Q  L  H  L  *  K  G  L  R  N  I  P  R  *  A  K  A  M  L  L  G  C  R  P  H  N  S   : G  *  Q  N  *  R  I  A  G  A  D  L  M  L  Y  T  I  K  *  N  R  L  C  E  L  S  A  T  R  G  *  *  *  N  P  L  N  R  C  T  S  S  V  F  H  R  I  W  Q  I  S  E  E  I  I  V  S  *  L  C  P  S  L  L  P  Q  L  S  N  L  *  E  A  N  G  L  S  R  E  *  *  I  F  E  S  M  D  K  D  E  K  I  V  E  W  C  S  L  F  Q  C  F  I  K  P  Q  S  I  C  F  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117992" stop="117806"/>
                    <exon start="117084" stop="117001"/>
                    <exon start="116906" stop="116565"/>
                    <exon start="115022" stop="114887"/>
                    <exon start="114623" stop="114461"/>
                    <exon start="114153" stop="114085"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAYDSAEMGACVSRPDSCVGGKLKGSNKFRKKRGGRRRRKKSNSLHKIDEAFPLDNYNPTFQGRIEEAWFDSAAIFESDCSDEDFQSVPDDVLSVNSFDCGRTSVASIKDTNNGDVNLNPDGPHSEVRPVFLDEISSSENIGSGREDGLSENCGILSNNCLPRLTSTVVPVEKRSLSSSPPSSRKKADLKLPFKWKDGNPCATLLSSKTLLQRPIAGSQVPVCPLENKLPDSWSYIEPNTFRVRGGNYFRDKKKEFAANNAAYYPFGVDVFLSQRKIDHIAQLVELPVIEHSGTLPPILVVNIQSLFYRCHYILPQFFRVKLTVKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117367" e_stop="117001"/>
            <exon e_start="116906" e_stop="116780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.966" e_score="0.954"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="117367" e_stop="117001" e_length="367"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.966">
            <gDNA_intron_boundary i_start="117000" i_stop="116907" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="116906" e_stop="116780" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117367" stop="117001"/>
              <exon start="116906" stop="116780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335618" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCGCTGCATACAATTTGCCTTGATAGTTTCTCATGTTCTTGTGATGTCGTTATCTTTTCCTAACTCCTGTTAAATGCCTTCAGCAAGTGGCAAGTTAAAGTGAGATTATATGTTTCGTTGTTCGTTAGGATATAAGTTTGTTTGCAACGTTACATCTATTATTCATTGGAAAGGATCTTGTATAGTTTAAGTTTTCATGTTTTTATTCGAAAGGTAAATAGCAGATAAAATCATCAGAAATAACCTTTGGAAATGTTTAATGTTTGTCATGGAAATCGCAGGACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATG : ATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGA</gDNA_template>
            <first_frame> F  R  C  I  Q  F  A  L  I  V  S  H  V  L  V  M  S  L  S  F  P  N  S  C  *  M  P  S  A  S  G  K  L  K  *  D  Y  M  F  R  C  S  L  G  Y  K  F  V  C  N  V  T  S  I  I  H  W  K  G  S  C  I  V  *  V  F  M  F  L  F  E  R  *  I  A  D  K  I  I  R  N  N  L  W  K  C  L  M  F  V  M  E  I  A  G  R  I  E  E  A  W  F  D  S  A  A  I  F  E  S  D  C  S  D  E  D  F  Q  S  V  P  D   : D  V  L  S  V  N  S  F  D  C  G  R  T  S  V  A  S  I  K  D  T  N  N  G  D  V  N  L  N  P  D  G  P  H  S  E  V  R  P  V  F  L   </first_frame>
            <second_frame>  S  A  A  Y  N  L  P  *  *  F  L  M  F  L  *  C  R  Y  L  F  L  T  P  V  K  C  L  Q  Q  V  A  S  *  S  E  I  I  C  F  V  V  R  *  D  I  S  L  F  A  T  L  H  L  L  F  I  G  K  D  L  V  *  F  K  F  S  C  F  Y  S  K  G  K  *  Q  I  K  S  S  E  I  T  F  G  N  V  *  C  L  S  W  K  S  Q  D  G  L  R  R  H  G  L  I  L  L  Q  Y  L  N  L  I  A  V  M  K  I  S  R  V  F  L  M  :  M  Y  F  L  S  T  A  L  I  V  G  G  L  V  *  L  R  S  K  I  L  T  M  G  M  L  I  *  T  P  M  D  L  T  V  R  Y  G  L  F  S  L  </second_frame>
            <third_frame>   P  L  H  T  I  C  L  D  S  F  S  C  S  C  D  V  V  I  F  S  *  L  L  L  N  A  F  S  K  W  Q  V  K  V  R  L  Y  V  S  L  F  V  R  I  *  V  C  L  Q  R  Y  I  Y  Y  S  L  E  R  I  L  Y  S  L  S  F  H  V  F  I  R  K  V  N  S  R  *  N  H  Q  K  *  P  L  E  M  F  N  V  C  H  G  N  R  R  T  D  *  G  G  M  V  *  F  C  C  N  I  *  I  *  L  Q  *  *  R  F  P  E  C  S  *  * :   C  T  F  C  Q  Q  L  *  L  W  A  D  *  C  S  F  D  Q  R  Y  *  Q  W  G  C  *  F  K  P  R  W  T  S  Q  *  G  T  A  C  F  P  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117148" stop="117001"/>
                    <exon start="116906" stop="116782"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IADKIIRNNLWKCLMFVMEIAGRIEEAWFDSAAIFESDCSDEDFQSVPDDVLSVNSFDCGRTSVASIKDTNNGDVNLNPDGPHSEVRPVFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 39 chains have been computed
$ 
$ memory statistics:
$ 141944 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 7470 bytes was the average size of a spliced alignment
$ 22040 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1574 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 54 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:55:22
-->
