<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:42:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255140" ref_strand="+" ref_description="SGN-E255140 [cLEG-31-C17]">
      <seq>ggagctactgtggcaccccttgttcagcttcttctctggttattcttccccattgcttatccaattagtaaggtcttggattggatgttaggtaaggggcacgctgcccttctgcgaagagctgagctcaaaacttttgtggatttccatggcaatgaggctggaaaaggaggggatttgacacatgatgaaacaacaataattgctggagcactggagttgacagaaaaaactgcaaaagatgcgatgactccaatatcaaaggctttttctcttgatctggatggaacacttaacttggaaacactaaatgctataatgacaatggggcatagcagagttcctgtttactacagaaagtcgacaaatattataggactaattttggttaaaaatcttttggcggttcactcagaagaaaattcagttcccctgaggaaaatgttgataagaaaaattccgagggtttctgaaaacatgcctctgtatgacattttgaatgagtttcagaagggccatagccacatcgctgttgtatataaagatctgaacgagacgaaagatatgccagtgaatgataaagatgctgatagcacaacaccaaaatctaactcgcatgacattaagactgcattacataaggctgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="4506" stop="885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4206" g_stop="4135" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4134" i_stop="3817" i_length="318">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3816" g_stop="3730" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="159" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3729" i_stop="3515" i_length="215">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3514" g_stop="3375" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="299" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3374" i_stop="3282" i_length="93">
            <donor d_prob="0.157" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3281" g_stop="3194" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="387" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3193" i_stop="2993" i_length="201">
            <donor d_prob="0.446" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2992" g_stop="2916" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="464" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2915" i_stop="1671" i_length="1245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1670" g_stop="1552" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="583" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1551" i_stop="1254" i_length="298">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1253" g_stop="1185" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="652" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E255140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4206" e_stop="4135"/>
          <exon e_start="3816" e_stop="3730"/>
          <exon e_start="3514" e_stop="3375"/>
          <exon e_start="3281" e_stop="3194"/>
          <exon e_start="2992" e_stop="2916"/>
          <exon e_start="1670" e_stop="1552"/>
          <exon e_start="1253" e_stop="1185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTACTGTGGCACCCCTTGTTCAGCTTCTTCTCTGGTTATTCTTCCCCATTGCTTATCCAATTAGTAAGGTATAAAGCACAACAATCACATCCTATAGTTTACTTCTTAGAGCTGTTAAGTTTCCATGTTTTGCTACCAGAGAGAGAAATGCTTCACCAGCTTTAATTTTGGTTGCCACTGTGTCACGATGCAAGTCAAATGACAGGGCTTAAGAAATAAAACTTAATGAATCCACTAATAGCTCATAAGATTGTTCTGGACTCATATACACTTTGGCGATTAATTTGTATGTGCTTTTCCTTTCTGTAAGCTTGGGAAAAAAGGATCTTATTATCAGCTTGATAAAGAAAAAGGGATCTTAACTTCATCCTTGGTTTTGCTTTTAGGTCTTGGATTGGATGTTAGGTAAGGGGCACGCTGCCCTTCTGCGAAGAGCTGAGCTCAAAACTTTTGTGGATTTCCATGGCAATGAGGTAATGTTTCACTAGTTCTCGATTTTTGTTGCTGATCTAAGCACATGTAAAATATCTTTAGACATGCAATATTTGTATATATGCATGAACACTGTCGCTTACACAAACAAGTTCATCTCATTAAGATTAGATGCTATAGCTGAACCTTGTTTCCAAATTCGTTCTGTTTATTTTTCTGTATGCCTCAGCTTGTTTGCTTCTTATTGCTATGACAGGCTGGAAAAGGAGGGGATTTGACACATGATGAAACAACAATAATTGCTGGAGCACTGGAGTTGACAGAAAAAACTGCAAAAGATGCGATGACTCCAATATCAAAGGCTTTTTCTCTTGATCTGGATGGAACACTTAACTTGTGGGTTAATAAGTTGCTGTTCAATTTGATTTCAAGCTTTCATAAACTTCTTATGTTCTATAACACGTCTATCTCCCTCTCTCTCTCATGCAGGGAAACACTAAATGCTATAATGACAATGGGGCATAGCAGAGTTCCTGTTTACTACAGAAAGTCGACAAATATTATAGGACTAATTTTGGTAATAAATGTTTCCTCCATGCTGAACTCAATTTTTACCTTGTTGTGGATTCACTTATTGTGTTGAAGTTTAATTGTCAACGTCATTTATGAAGAGTTCTTGTTTCTTTTGCTGTGTTACTTCTGCAAGTATGTGTATCTGTAACTTACTGATATTGTGTTCCATGCTCCCTTTACGTGTCGTCAAATATTTTGCGGGCAGGTTAAAAATCTTTTGGCGGTTCACTCAGAAGAAAATTCAGTTCCCCTGAGGAAAATGTTGATAAGAAAAATTCCGAGGTAAAGATAACTGCAGCAATTCTTCCCTTTCTGAAATGTTTATGTTTATAACCAATCAATTAACTATGCCCCAAGCTCACCTAAACAGAACTTATTGGTTCATGGGCAACAGTTGCGGGATACTCAGAAAAAGAAAGTAAAGCTAATTTAAACAATTGAATTATGATTGCGTCAATGTTTTCGTGATGGACCAGTCCCATATCAGTACTATTTTGTGCTGAGATGGGGTTCATATAGCCGGCCTTGGGCTCTCCAACCTTAAAATCTAGCTTTTGGTGTGTGATTCTCCTTGAGTTGCGTCCCATCATGCCTTGGATGGTGACACCAGTATTCCAGTGTTTGCCCAGGACTAGTATTGTCTAGCGCACCATGTCAAGGACGACGGATGCGGAGTATGGTGATTTTTTGTGGTCCAGTCCCATATTCGATACTACTATGTGCTGAGGTGGGGCTTATATAGCCTTGAGCTCCCCCACCTCAATAAAAAGCTTTTGGATGTGGTTCTCCCTGGGTTTTAGGGGTTTATATAGCCTTGGGTTCCCCCACCTCAATCACTAGTTTTTGGGGTGTGGTTCTCACTGGGTTGTAGGGGTTTACACAGCCTTGGGCTACCCCACTTCAATAACTAGCTTTCGGGGTGTGTTTCTCCCTGGGTTGTAACAGTTTTCTGCACTTCACTATTGTACCATGGTTTCTTTATGACCTTATAACTTAACAGGTTAGCATCCATTCGCTGATGCTATGTAGTCTCTTTTCTAAACACAACAATTTAAAGGTTACTGATACTAACTGACCGAGGGTGCCATGGTCTTCCACCATGGTCCTTTCACTTGTAGAATTCATCTGCATCTAACTAGAGTAGGGGAAGTAGTTGATTTCGTCTCATATAGTTCATGCGTCATGGTTTTACACGCCAAGCTTCATTTCAATATTTGTTTATCATCTCGAAGGCTATCAGACTTCTATTATAGCCTTCTGACTGATCCAATTATCCTTCTGTGCTTTCTCTACACAAGATAACTTCCTGTAGCTTCCAAATAACTAATTCTAAGGTTCTGAATTCTGATTATTATGAAGTACTTCCTAGATATCCACGATCTTTTCATAGATCTGCAGTTTTGATTGTACAAACTGTAATATGAGTGACACATTCGTAGAGGAAAAAATTTACAGCTGAATTAAGATAATAGTTAGCATACAACGCTCTTATTCTAAGCTAATTGTACAGCATTGGTATTTTTTCAGGGTTTCTGAAAACATGCCTCTGTATGACATTTTGAATGAGTTTCAGAAGGGCCATAGCCACATCGCTGTTGTATATAAAGATCTGAACGAGACGAAAGATATGCCAGTGAATGATAAAGGTCTGAAACCTTGAACTAGTCTTGGCTCTACCACGTGGCTACTTATCCTAGTTTTTCTGTTAAAACATTATTGCGAGCCTTAAACGTCTTTGTCTGCATATCCAGTTTAATTTCTCATTCATTTTGTGCTAAATGGGCTTCTGATCAACTCTCTCCAAGTCCTCAATACCTTGTAATTACCTCTATTTCAGAAATGAAGCAAACAGATCTTCAGAGATTAAACATTACAGTTTTCTATTAAATTTGTGAAATTACGATTTGGCCAACTTTTAATTGTTGTATGAACTGATAATTGCAGATGCTGATAGCACAACACCAAAATCTAACTCGCATGACATTAAGACTGCATTACATAAGGCTGATGATG</genome_strand>
        <mrna_strand>GGAGCTACTGTGGCACCCCTTGTTCAGCTTCTTCTCTGGTTATTCTTCCCCATTGCTTATCCAATTAGTAAG..............................................................................................................................................................................................................................................................................................................................GTCTTGGATTGGATGTTAGGTAAGGGGCACGCTGCCCTTCTGCGAAGAGCTGAGCTCAAAACTTTTGTGGATTTCCATGGCAATGAG.......................................................................................................................................................................................................................GCTGGAAAAGGAGGGGATTTGACACATGATGAAACAACAATAATTGCTGGAGCACTGGAGTTGACAGAAAAAACTGCAAAAGATGCGATGACTCCAATATCAAAGGCTTTTTCTCTTGATCTGGATGGAACACTTAACTT.............................................................................................GGAAACACTAAATGCTATAATGACAATGGGGCATAGCAGAGTTCCTGTTTACTACAGAAAGTCGACAAATATTATAGGACTAATTTTG.........................................................................................................................................................................................................GTTAAAAATCTTTTGGCGGTTCACTCAGAAGAAAATTCAGTTCCCCTGAGGAAAATGTTGATAAGAAAAATTCCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCTGAAAACATGCCTCTGTATGACATTTTGAATGAGTTTCAGAAGGGCCATAGCCACATCGCTGTTGTATATAAAGATCTGAACGAGACGAAAGATATGCCAGTGAATGATAAAG..........................................................................................................................................................................................................................................................................................................ATGCTGATAGCACAACACCAAAATCTAACTCGCATGACATTAAGACTGCATTACATAAGGCTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275798" ref_strand="+" ref_description="SGN-E275798 [cLEN-18-B21]">
      <seq>ctggaaaaggaggggatttgacacatgatgaaacaacaataattgctggagcactggagttgacagaaaaaactgcaaaagatgcgatgactccaatatcaaaggctttttctcttgatctggatggaacacttaacttggaaacactaaatgctataaagacaatggggcatagcaaagttcctgtttactacataaagtcgacaaatattataggactaattttggttaaaaatcttttggcggttcactcataagaaaattcagttcccctgaggaaaatgttgataagaaaaattccgaaggtttctgaaaacatgcctctgtatgacattttgaatgactttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="3813" stop="1325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3513" g_stop="3375" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3374" i_stop="3282" i_length="93">
            <donor d_prob="0.157" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3281" g_stop="3194" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="227" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3193" i_stop="2993" i_length="201">
            <donor d_prob="0.446" d_score="0.96"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2992" g_stop="2916" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="304" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2915" i_stop="1671" i_length="1245">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1670" g_stop="1625" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="350" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E275798" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3513" e_stop="3375"/>
          <exon e_start="3281" e_stop="3194"/>
          <exon e_start="2992" e_stop="2916"/>
          <exon e_start="1670" e_stop="1625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAAAAGGAGGGGATTTGACACATGATGAAACAACAATAATTGCTGGAGCACTGGAGTTGACAGAAAAAACTGCAAAAGATGCGATGACTCCAATATCAAAGGCTTTTTCTCTTGATCTGGATGGAACACTTAACTTGTGGGTTAATAAGTTGCTGTTCAATTTGATTTCAAGCTTTCATAAACTTCTTATGTTCTATAACACGTCTATCTCCCTCTCTCTCTCATGCAGGGAAACACTAAATGCTATAATGACAATGGGGCATAGCAGAGTTCCTGTTTACTACAGAAAGTCGACAAATATTATAGGACTAATTTTGGTAATAAATGTTTCCTCCATGCTGAACTCAATTTTTACCTTGTTGTGGATTCACTTATTGTGTTGAAGTTTAATTGTCAACGTCATTTATGAAGAGTTCTTGTTTCTTTTGCTGTGTTACTTCTGCAAGTATGTGTATCTGTAACTTACTGATATTGTGTTCCATGCTCCCTTTACGTGTCGTCAAATATTTTGCGGGCAGGTTAAAAATCTTTTGGCGGTTCACTCAGAAGAAAATTCAGTTCCCCTGAGGAAAATGTTGATAAGAAAAATTCCGAGGTAAAGATAACTGCAGCAATTCTTCCCTTTCTGAAATGTTTATGTTTATAACCAATCAATTAACTATGCCCCAAGCTCACCTAAACAGAACTTATTGGTTCATGGGCAACAGTTGCGGGATACTCAGAAAAAGAAAGTAAAGCTAATTTAAACAATTGAATTATGATTGCGTCAATGTTTTCGTGATGGACCAGTCCCATATCAGTACTATTTTGTGCTGAGATGGGGTTCATATAGCCGGCCTTGGGCTCTCCAACCTTAAAATCTAGCTTTTGGTGTGTGATTCTCCTTGAGTTGCGTCCCATCATGCCTTGGATGGTGACACCAGTATTCCAGTGTTTGCCCAGGACTAGTATTGTCTAGCGCACCATGTCAAGGACGACGGATGCGGAGTATGGTGATTTTTTGTGGTCCAGTCCCATATTCGATACTACTATGTGCTGAGGTGGGGCTTATATAGCCTTGAGCTCCCCCACCTCAATAAAAAGCTTTTGGATGTGGTTCTCCCTGGGTTTTAGGGGTTTATATAGCCTTGGGTTCCCCCACCTCAATCACTAGTTTTTGGGGTGTGGTTCTCACTGGGTTGTAGGGGTTTACACAGCCTTGGGCTACCCCACTTCAATAACTAGCTTTCGGGGTGTGTTTCTCCCTGGGTTGTAACAGTTTTCTGCACTTCACTATTGTACCATGGTTTCTTTATGACCTTATAACTTAACAGGTTAGCATCCATTCGCTGATGCTATGTAGTCTCTTTTCTAAACACAACAATTTAAAGGTTACTGATACTAACTGACCGAGGGTGCCATGGTCTTCCACCATGGTCCTTTCACTTGTAGAATTCATCTGCATCTAACTAGAGTAGGGGAAGTAGTTGATTTCGTCTCATATAGTTCATGCGTCATGGTTTTACACGCCAAGCTTCATTTCAATATTTGTTTATCATCTCGAAGGCTATCAGACTTCTATTATAGCCTTCTGACTGATCCAATTATCCTTCTGTGCTTTCTCTACACAAGATAACTTCCTGTAGCTTCCAAATAACTAATTCTAAGGTTCTGAATTCTGATTATTATGAAGTACTTCCTAGATATCCACGATCTTTTCATAGATCTGCAGTTTTGATTGTACAAACTGTAATATGAGTGACACATTCGTAGAGGAAAAAATTTACAGCTGAATTAAGATAATAGTTAGCATACAACGCTCTTATTCTAAGCTAATTGTACAGCATTGGTATTTTTTCAGGGTTTCTGAAAACATGCCTCTGTATGACATTTTGAATGAGTTTCAG</genome_strand>
        <mrna_strand>CTGGAAAAGGAGGGGATTTGACACATGATGAAACAACAATAATTGCTGGAGCACTGGAGTTGACAGAAAAAACTGCAAAAGATGCGATGACTCCAATATCAAAGGCTTTTTCTCTTGATCTGGATGGAACACTTAACTT.............................................................................................GGAAACACTAAATGCTATAAAGACAATGGGGCATAGCAAAGTTCCTGTTTACTACATAAAGTCGACAAATATTATAGGACTAATTTTG.........................................................................................................................................................................................................GTTAAAAATCTTTTGGCGGTTCACTCATAAGAAAATTCAGTTCCCCTGAGGAAAATGTTGATAAGAAAAATTCCGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCTGAAAACATGCCTCTGTATGACATTTTGAATGACTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542298" ref_strand="+" ref_description="SGN-E542298 [TUS-63-I13]">
      <seq>aaaacaaatctaaaaagtttaaagttccaaaaaaaaaaaatcaaatctttttccaagttttcaaattttctttgaacttggggaaaagaaaatggcagatgtgccttgttgtggaacagaattttttgtgtttattttggttattataggattggtgttgtttgctggtttgatggctggtcttacacttggtcttatgtctcttggacttgtcgaccttgaagttctcagcaaatctggtcgtccacaagatcgtagtcatgcctctaaaatacttccagtcgtaaaaaaccaacaccttttgctttgcacactcttgatcggcaactctttagcaatggagtctcttccaattttcttggacaagcttgtaccttcatgggcagctgtactggtatctgtgacactgattctcatgtttggagagataattcctcaagcaatctgtactcgctatggattgactgttggagctactgtggcaccccttgttcagcttcttctctggttattcttccccattgcttatccaattagtaaggtcttggattggatgttaggtaaggggcacgctgcccttctgcgaagagctgagctcaaaacttttgtggatttccatggcaatgaggctggaaaaggaggggatttgacacatgatgaaacaacataattgctggagcactggagttgacagaaaaaactgcaaaagatgcgatgactcccatatcaaaggctttttctcttgatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="6244" stop="3092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5944" g_stop="5679" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5678" i_stop="4598" i_length="1081">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4597" g_stop="4521" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="343" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4520" i_stop="4434" i_length="87">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4433" g_stop="4350" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="427" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4349" i_stop="4249" i_length="101">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4248" g_stop="4135" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="541" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4134" i_stop="3817" i_length="318">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3816" g_stop="3730" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="628" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3729" i_stop="3515" i_length="215">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3514" g_stop="3392" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="750" r_length="122" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E542298" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5944" e_stop="5679"/>
          <exon e_start="4597" e_stop="4521"/>
          <exon e_start="4433" e_stop="4350"/>
          <exon e_start="4248" e_stop="4135"/>
          <exon e_start="3816" e_stop="3730"/>
          <exon e_start="3514" e_stop="3392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAATCTAAAAAGTTTAAAGTTCCAAAAAAAAAAAATCAAATCTTTTTCCAAGTTTTCAAATTTTCTTTGAACTTGGGGAAAAGAAAATGGCAGATGTGCCTTGTTGTGGAACAGAATTTTTTGTGTTTATTTTGGTTATTATAGGATTGGTGTTGTTTGCTGGTTTGATGGCTGGTCTTACACTTGGTCTTATGTCTCTTGGACTTGTCGACCTTGAAGTTCTCAGCAAATCTGGTCGTCCACAAGATCGTAGTCATGCCTGTAAGTTTTATTATGAAGAATATGGTAAAGATTGATGAGTTGGGGTATATTAGTAAGTGCTAAAGTTTGCTGCTTTGGGGTTTATTAGGAAGTGCTAAAGTTAGCTGCTTTGGGTTTTATTAGAAGTGTTGAAGATTGATGATTTGGGGTTTTATTAGGAAGTGTTAAAGTTTGCTGATTTGGGTTTTATTAGAAACTGCTAAAGATTGCTGCTTTGGGGTTTATTAGGAAGAGCTAAAGTTTGCTGATTTGGGTTTTTAGTTATCTGTTTGTGTTTAATGGAAGTTTGATGTGTTATCCTTTATTTTTGCTAGGGGTAGAGTTAATTAGGGGCTGTGAAAAATTCATATGGTATATACAAGGTCAAAAAGCCTTTTTTATGTGTATATTGTAGATGATGAACTGCTTGGTGAATTTCCTGTGTTTGCTAATGTTGATGAGTAGTTTTGATTGACTAATGTCTACCTGCTACCTTTGTAACTTTGGTGTAAAGTTGTAAACTTTTCTATATGATCAATTTTTGGAGTTATATTTCCTCTTGCTAATTCTATGCACTAGTCAGGTTTTTACTTTAAGATTGTTCATATGGGTAAATGAAATGTTTAGAATTGGCTGTCCCAAAACATATTTTTCGAAAGAAACAAAAAGGTTGAATCTTAATTTATGCAGGAGGGTTATAAATCATGAATAAGTAAAAGAGAGTGAATTTGTCCTTGGAAACTGAATAAACTGTTTAGCAATAAGCTTGATGTGGTAGCTTTTGTTGTGGTTGAAATGCAATGCAAATTGTGGATACATAAAGTAAGGAAATGGTGTATTGATTATATACACGAACAAGGTAATTGAATAGTTGAAGAACTAAGACAAAGAGGTACATGATTCTTGTCATACCTGGAATGGACAAATGAGAAAGTTAAGTCAGTTCTCATATCATGATTCTACAATTGAAGCAATAATCACTGATGTTGTAATAAAGCTTATACTGTGATAAGTTAGAAAAGAAGCAGTGTTGTGACGCAATATGAGTTGTAGAATGTTCGCTTGCATCGGCTTCTTAAAGATTTTTTCCTTTCTTTGACAGCTAAAATACTTCCAGTCGTAAAAAACCAACACCTTTTGCTTTGCACACTCTTGATCGGCAACTCTTTAGCAATGGAGGTTTGTGTGCCAGTACTTATTTGGCAATAGTTATCCTTTTATTACCCGTGCTTACTTATTTATTACTTCTCTCCTTTTCCTTTGTAGTCTCTTCCAATTTTCTTGGACAAGCTTGTACCTTCATGGGCAGCTGTACTGGTATCTGTGACACTGATTCTCATGTTTGGAGAGGTGGTCTATTCTACTCATCAACTTAATATTTCAGCTTGTTAGCTATTGCATTTGCTCGTCTCTTGTTCTGTAACTAGGCTTTGTTGCTTTTATGTTTGCAGATAATTCCTCAAGCAATCTGTACTCGCTATGGATTGACTGTTGGAGCTACTGTGGCACCCCTTGTTCAGCTTCTTCTCTGGTTATTCTTCCCCATTGCTTATCCAATTAGTAAGGTATAAAGCACAACAATCACATCCTATAGTTTACTTCTTAGAGCTGTTAAGTTTCCATGTTTTGCTACCAGAGAGAGAAATGCTTCACCAGCTTTAATTTTGGTTGCCACTGTGTCACGATGCAAGTCAAATGACAGGGCTTAAGAAATAAAACTTAATGAATCCACTAATAGCTCATAAGATTGTTCTGGACTCATATACACTTTGGCGATTAATTTGTATGTGCTTTTCCTTTCTGTAAGCTTGGGAAAAAAGGATCTTATTATCAGCTTGATAAAGAAAAAGGGATCTTAACTTCATCCTTGGTTTTGCTTTTAGGTCTTGGATTGGATGTTAGGTAAGGGGCACGCTGCCCTTCTGCGAAGAGCTGAGCTCAAAACTTTTGTGGATTTCCATGGCAATGAGGTAATGTTTCACTAGTTCTCGATTTTTGTTGCTGATCTAAGCACATGTAAAATATCTTTAGACATGCAATATTTGTATATATGCATGAACACTGTCGCTTACACAAACAAGTTCATCTCATTAAGATTAGATGCTATAGCTGAACCTTGTTTCCAAATTCGTTCTGTTTATTTTTCTGTATGCCTCAGCTTGTTTGCTTCTTATTGCTATGACAGGCTGGAAAAGGAGGGGATTTGACACATGATGAAACAACAATAATTGCTGGAGCACTGGAGTTGACAGAAAAAACTGCAAAAGATGCGATGACTCCAATATCAAAGGCTTTTTCTCTTGATCTG</genome_strand>
        <mrna_strand>AAAACAAATCTAAAAAGTTTAAAGTTCCAAAAAAAAAAAATCAAATCTTTTTCCAAGTTTTCAAATTTTCTTTGAACTTGGGGAAAAGAAAATGGCAGATGTGCCTTGTTGTGGAACAGAATTTTTTGTGTTTATTTTGGTTATTATAGGATTGGTGTTGTTTGCTGGTTTGATGGCTGGTCTTACACTTGGTCTTATGTCTCTTGGACTTGTCGACCTTGAAGTTCTCAGCAAATCTGGTCGTCCACAAGATCGTAGTCATGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATACTTCCAGTCGTAAAAAACCAACACCTTTTGCTTTGCACACTCTTGATCGGCAACTCTTTAGCAATGGAG.......................................................................................TCTCTTCCAATTTTCTTGGACAAGCTTGTACCTTCATGGGCAGCTGTACTGGTATCTGTGACACTGATTCTCATGTTTGGAGAG.....................................................................................................ATAATTCCTCAAGCAATCTGTACTCGCTATGGATTGACTGTTGGAGCTACTGTGGCACCCCTTGTTCAGCTTCTTCTCTGGTTATTCTTCCCCATTGCTTATCCAATTAGTAAG..............................................................................................................................................................................................................................................................................................................................GTCTTGGATTGGATGTTAGGTAAGGGGCACGCTGCCCTTCTGCGAAGAGCTGAGCTCAAAACTTTTGTGGATTTCCATGGCAATGAG.......................................................................................................................................................................................................................GCTGGAAAAGGAGGGGATTTGACACATGATGAAACAAC-ATAATTGCTGGAGCACTGGAGTTGACAGAAAAAACTGCAAAAGATGCGATGACTCCCATATCAAAGGCTTTTTCTCTTGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300184" ref_strand="+" ref_description="SGN-E300184 [cLEW-17-I5]">
      <seq>aaacaaatctaaaaagtttaaagttccaaaaaaaaaaaatcaaatctttttccaagttttcaaattttctttgaacttggggaaaagaaaatggcagatgtgccttgttgtggaacagaattttttgtgtttattttggttattataggattggtgttgtttgctggtttgatggctggtcttacacttggtcttatgtctcttggacttgtcgaccttgaagttctcagcaaatctggtcgtccacaagatcgtagtcatgcctctaaaatacttccagtcgtaaaaaaccaacaccttttgctttgcacactcttgatcggcaactctttagcaatggagtctcttccaattttcttggacaagcttgtaccttcatgggcagctgtactggtatctgtgacactgattctcatgtttggagagataattcctcaagcaatctgtactcgctatggattgactgttggagctactgtggcaccccttgttcagcttcttctctggttattcttccccattgcttatccaattagtaaggtcttggattggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="6243" stop="3831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5943" g_stop="5679" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5678" i_stop="4598" i_length="1081">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4597" g_stop="4521" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="342" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4520" i_stop="4434" i_length="87">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4433" g_stop="4350" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="426" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4349" i_stop="4249" i_length="101">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4248" g_stop="4135" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="540" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E300184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5943" e_stop="5679"/>
          <exon e_start="4597" e_stop="4521"/>
          <exon e_start="4433" e_stop="4350"/>
          <exon e_start="4248" e_stop="4135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAATCTAAAAAGTTTAAAGTTCCAAAAAAAAAAAATCAAATCTTTTTCCAAGTTTTCAAATTTTCTTTGAACTTGGGGAAAAGAAAATGGCAGATGTGCCTTGTTGTGGAACAGAATTTTTTGTGTTTATTTTGGTTATTATAGGATTGGTGTTGTTTGCTGGTTTGATGGCTGGTCTTACACTTGGTCTTATGTCTCTTGGACTTGTCGACCTTGAAGTTCTCAGCAAATCTGGTCGTCCACAAGATCGTAGTCATGCCTGTAAGTTTTATTATGAAGAATATGGTAAAGATTGATGAGTTGGGGTATATTAGTAAGTGCTAAAGTTTGCTGCTTTGGGGTTTATTAGGAAGTGCTAAAGTTAGCTGCTTTGGGTTTTATTAGAAGTGTTGAAGATTGATGATTTGGGGTTTTATTAGGAAGTGTTAAAGTTTGCTGATTTGGGTTTTATTAGAAACTGCTAAAGATTGCTGCTTTGGGGTTTATTAGGAAGAGCTAAAGTTTGCTGATTTGGGTTTTTAGTTATCTGTTTGTGTTTAATGGAAGTTTGATGTGTTATCCTTTATTTTTGCTAGGGGTAGAGTTAATTAGGGGCTGTGAAAAATTCATATGGTATATACAAGGTCAAAAAGCCTTTTTTATGTGTATATTGTAGATGATGAACTGCTTGGTGAATTTCCTGTGTTTGCTAATGTTGATGAGTAGTTTTGATTGACTAATGTCTACCTGCTACCTTTGTAACTTTGGTGTAAAGTTGTAAACTTTTCTATATGATCAATTTTTGGAGTTATATTTCCTCTTGCTAATTCTATGCACTAGTCAGGTTTTTACTTTAAGATTGTTCATATGGGTAAATGAAATGTTTAGAATTGGCTGTCCCAAAACATATTTTTCGAAAGAAACAAAAAGGTTGAATCTTAATTTATGCAGGAGGGTTATAAATCATGAATAAGTAAAAGAGAGTGAATTTGTCCTTGGAAACTGAATAAACTGTTTAGCAATAAGCTTGATGTGGTAGCTTTTGTTGTGGTTGAAATGCAATGCAAATTGTGGATACATAAAGTAAGGAAATGGTGTATTGATTATATACACGAACAAGGTAATTGAATAGTTGAAGAACTAAGACAAAGAGGTACATGATTCTTGTCATACCTGGAATGGACAAATGAGAAAGTTAAGTCAGTTCTCATATCATGATTCTACAATTGAAGCAATAATCACTGATGTTGTAATAAAGCTTATACTGTGATAAGTTAGAAAAGAAGCAGTGTTGTGACGCAATATGAGTTGTAGAATGTTCGCTTGCATCGGCTTCTTAAAGATTTTTTCCTTTCTTTGACAGCTAAAATACTTCCAGTCGTAAAAAACCAACACCTTTTGCTTTGCACACTCTTGATCGGCAACTCTTTAGCAATGGAGGTTTGTGTGCCAGTACTTATTTGGCAATAGTTATCCTTTTATTACCCGTGCTTACTTATTTATTACTTCTCTCCTTTTCCTTTGTAGTCTCTTCCAATTTTCTTGGACAAGCTTGTACCTTCATGGGCAGCTGTACTGGTATCTGTGACACTGATTCTCATGTTTGGAGAGGTGGTCTATTCTACTCATCAACTTAATATTTCAGCTTGTTAGCTATTGCATTTGCTCGTCTCTTGTTCTGTAACTAGGCTTTGTTGCTTTTATGTTTGCAGATAATTCCTCAAGCAATCTGTACTCGCTATGGATTGACTGTTGGAGCTACTGTGGCACCCCTTGTTCAGCTTCTTCTCTGGTTATTCTTCCCCATTGCTTATCCAATTAGTAAG</genome_strand>
        <mrna_strand>AAACAAATCTAAAAAGTTTAAAGTTCCAAAAAAAAAAAATCAAATCTTTTTCCAAGTTTTCAAATTTTCTTTGAACTTGGGGAAAAGAAAATGGCAGATGTGCCTTGTTGTGGAACAGAATTTTTTGTGTTTATTTTGGTTATTATAGGATTGGTGTTGTTTGCTGGTTTGATGGCTGGTCTTACACTTGGTCTTATGTCTCTTGGACTTGTCGACCTTGAAGTTCTCAGCAAATCTGGTCGTCCACAAGATCGTAGTCATGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATACTTCCAGTCGTAAAAAACCAACACCTTTTGCTTTGCACACTCTTGATCGGCAACTCTTTAGCAATGGAG.......................................................................................TCTCTTCCAATTTTCTTGGACAAGCTTGTACCTTCATGGGCAGCTGTACTGGTATCTGTGACACTGATTCTCATGTTTGGAGAG.....................................................................................................ATAATTCCTCAAGCAATCTGTACTCGCTATGGATTGACTGTTGGAGCTACTGTGGCACCCCTTGTTCAGCTTCTTCTCTGGTTATTCTTCCCCATTGCTTATCCAATTAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332646" ref_strand="+" ref_description="SGN-E332646 [cTOD-18-D4]">
      <seq>tttttccaagttttcaaattttctttgaacttggggaaaagaaaatggcagatgtgccttgttgtggaacagaattttttgtgtttattttggttattataggattggtgttgtttgctggtttgatggctggtcttacacttggtcttatgtctcttggacttgtcgaccttgaagttctcagcaaatctggtcgtccacaagatcgtagtcatgcctctaaaatacttccagtcgtaaaaaaccaacaccttttgctttgcacactcttgatcggcaactctttagcaatggagtctcttccaattttcttggacaagcttgtaccttcatgggcagctgtactggtatctgtgacactgattctcatgtttggagagataattcccctcagcatctgtactcgctatggattgactgttggagctactgtggcaccccttgttcagcttcttctctgggtattcttcccattgcttatccaatagtaaggtcttggattggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="6197" stop="3831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5897" g_stop="5679" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5678" i_stop="4598" i_length="1081">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4597" g_stop="4521" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="296" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4520" i_stop="4434" i_length="87">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4433" g_stop="4350" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="380" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4349" i_stop="4249" i_length="101">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4248" g_stop="4135" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="492" r_length="112" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E332646" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5897" e_stop="5679"/>
          <exon e_start="4597" e_stop="4521"/>
          <exon e_start="4433" e_stop="4350"/>
          <exon e_start="4248" e_stop="4135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCAAGTTTTCAAATTTTCTTTGAACTTGGGGAAAAGAAAATGGCAGATGTGCCTTGTTGTGGAACAGAATTTTTTGTGTTTATTTTGGTTATTATAGGATTGGTGTTGTTTGCTGGTTTGATGGCTGGTCTTACACTTGGTCTTATGTCTCTTGGACTTGTCGACCTTGAAGTTCTCAGCAAATCTGGTCGTCCACAAGATCGTAGTCATGCCTGTAAGTTTTATTATGAAGAATATGGTAAAGATTGATGAGTTGGGGTATATTAGTAAGTGCTAAAGTTTGCTGCTTTGGGGTTTATTAGGAAGTGCTAAAGTTAGCTGCTTTGGGTTTTATTAGAAGTGTTGAAGATTGATGATTTGGGGTTTTATTAGGAAGTGTTAAAGTTTGCTGATTTGGGTTTTATTAGAAACTGCTAAAGATTGCTGCTTTGGGGTTTATTAGGAAGAGCTAAAGTTTGCTGATTTGGGTTTTTAGTTATCTGTTTGTGTTTAATGGAAGTTTGATGTGTTATCCTTTATTTTTGCTAGGGGTAGAGTTAATTAGGGGCTGTGAAAAATTCATATGGTATATACAAGGTCAAAAAGCCTTTTTTATGTGTATATTGTAGATGATGAACTGCTTGGTGAATTTCCTGTGTTTGCTAATGTTGATGAGTAGTTTTGATTGACTAATGTCTACCTGCTACCTTTGTAACTTTGGTGTAAAGTTGTAAACTTTTCTATATGATCAATTTTTGGAGTTATATTTCCTCTTGCTAATTCTATGCACTAGTCAGGTTTTTACTTTAAGATTGTTCATATGGGTAAATGAAATGTTTAGAATTGGCTGTCCCAAAACATATTTTTCGAAAGAAACAAAAAGGTTGAATCTTAATTTATGCAGGAGGGTTATAAATCATGAATAAGTAAAAGAGAGTGAATTTGTCCTTGGAAACTGAATAAACTGTTTAGCAATAAGCTTGATGTGGTAGCTTTTGTTGTGGTTGAAATGCAATGCAAATTGTGGATACATAAAGTAAGGAAATGGTGTATTGATTATATACACGAACAAGGTAATTGAATAGTTGAAGAACTAAGACAAAGAGGTACATGATTCTTGTCATACCTGGAATGGACAAATGAGAAAGTTAAGTCAGTTCTCATATCATGATTCTACAATTGAAGCAATAATCACTGATGTTGTAATAAAGCTTATACTGTGATAAGTTAGAAAAGAAGCAGTGTTGTGACGCAATATGAGTTGTAGAATGTTCGCTTGCATCGGCTTCTTAAAGATTTTTTCCTTTCTTTGACAGCTAAAATACTTCCAGTCGTAAAAAACCAACACCTTTTGCTTTGCACACTCTTGATCGGCAACTCTTTAGCAATGGAGGTTTGTGTGCCAGTACTTATTTGGCAATAGTTATCCTTTTATTACCCGTGCTTACTTATTTATTACTTCTCTCCTTTTCCTTTGTAGTCTCTTCCAATTTTCTTGGACAAGCTTGTACCTTCATGGGCAGCTGTACTGGTATCTGTGACACTGATTCTCATGTTTGGAGAGGTGGTCTATTCTACTCATCAACTTAATATTTCAGCTTGTTAGCTATTGCATTTGCTCGTCTCTTGTTCTGTAACTAGGCTTTGTTGCTTTTATGTTTGCAGATAATTCCTC-AAGCAATCTGTACTCGCTATGGATTGACTGTTGGAGCTACTGTGGCACCCCTTGTTCAGCTTCTTCTCTGGTTATTCTTCCCCATTGCTTATCCAATTAGTAAG</genome_strand>
        <mrna_strand>TTTTTCCAAGTTTTCAAATTTTCTTTGAACTTGGGGAAAAGAAAATGGCAGATGTGCCTTGTTGTGGAACAGAATTTTTTGTGTTTATTTTGGTTATTATAGGATTGGTGTTGTTTGCTGGTTTGATGGCTGGTCTTACACTTGGTCTTATGTCTCTTGGACTTGTCGACCTTGAAGTTCTCAGCAAATCTGGTCGTCCACAAGATCGTAGTCATGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATACTTCCAGTCGTAAAAAACCAACACCTTTTGCTTTGCACACTCTTGATCGGCAACTCTTTAGCAATGGAG.......................................................................................TCTCTTCCAATTTTCTTGGACAAGCTTGTACCTTCATGGGCAGCTGTACTGGTATCTGTGACACTGATTCTCATGTTTGGAGAG.....................................................................................................ATAATTCCCCTCAGC-ATCTGTACTCGCTATGGATTGACTGTTGGAGCTACTGTGGCACCCCTTGTTCAGCTTCTTCTCTGGGTATTCTT-CCCATTGCTTATCCAA-TAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356013" ref_strand="+" ref_description="SGN-E356013 [cLHT-21-B20]">
      <seq>aaaaaaaaaagaatcacttacaaataattttgtaagttaggtagcttgaatgattttgggttcttgattaaaaaacaaatctaaaagtttaaaattccaaaaaaaaaaatcaaatctttttccaagttttcagattttctttgaacttggggaaaagaaaatggcagatgtgccttgttgtggaacagaattttttgtgtttattttggttattataggattggtgttgtttgctggtttgatggctggtcttacacttggtcttatgtctcttggacttgtcgaccttgaagttctcagcaaatctggtcgtccacaagatcgtattcatgcctctaaaatacttccagtcgtaaaaaaccaacaccttttgctttgcacactcttgatcggcaactctttagcaatggagtctcttccaattttcttggacaagcttgtaccttcatgggcagctgtactggtatctgtgacactgattctcatgtttggagagataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="6297" stop="4048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6014" g_stop="5679" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5678" i_stop="4598" i_length="1081">
            <donor d_prob="0.844" d_score="0.98"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4597" g_stop="4521" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="412" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4520" i_stop="4434" i_length="87">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4433" g_stop="4350" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="496" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4349" i_stop="4249" i_length="101">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4248" g_stop="4243" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="502" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E356013" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6014" e_stop="5679"/>
          <exon e_start="4597" e_stop="4521"/>
          <exon e_start="4433" e_stop="4350"/>
          <exon e_start="4248" e_stop="4243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAATAAAATCAG-TATAAATAATTTTGTAAGTTAGGTAGCTTGAATGATTTTGGGTTCTTGATAAAAAAACAAATCTAAAAAGTTTAAAGTTCCAAAAAAAAAAAATCAAATCTTTTTCCAAGTTTTCAAATTTTCTTTGAACTTGGGGAAAAGAAAATGGCAGATGTGCCTTGTTGTGGAACAGAATTTTTTGTGTTTATTTTGGTTATTATAGGATTGGTGTTGTTTGCTGGTTTGATGGCTGGTCTTACACTTGGTCTTATGTCTCTTGGACTTGTCGACCTTGAAGTTCTCAGCAAATCTGGTCGTCCACAAGATCGTAGTCATGCCTGTAAGTTTTATTATGAAGAATATGGTAAAGATTGATGAGTTGGGGTATATTAGTAAGTGCTAAAGTTTGCTGCTTTGGGGTTTATTAGGAAGTGCTAAAGTTAGCTGCTTTGGGTTTTATTAGAAGTGTTGAAGATTGATGATTTGGGGTTTTATTAGGAAGTGTTAAAGTTTGCTGATTTGGGTTTTATTAGAAACTGCTAAAGATTGCTGCTTTGGGGTTTATTAGGAAGAGCTAAAGTTTGCTGATTTGGGTTTTTAGTTATCTGTTTGTGTTTAATGGAAGTTTGATGTGTTATCCTTTATTTTTGCTAGGGGTAGAGTTAATTAGGGGCTGTGAAAAATTCATATGGTATATACAAGGTCAAAAAGCCTTTTTTATGTGTATATTGTAGATGATGAACTGCTTGGTGAATTTCCTGTGTTTGCTAATGTTGATGAGTAGTTTTGATTGACTAATGTCTACCTGCTACCTTTGTAACTTTGGTGTAAAGTTGTAAACTTTTCTATATGATCAATTTTTGGAGTTATATTTCCTCTTGCTAATTCTATGCACTAGTCAGGTTTTTACTTTAAGATTGTTCATATGGGTAAATGAAATGTTTAGAATTGGCTGTCCCAAAACATATTTTTCGAAAGAAACAAAAAGGTTGAATCTTAATTTATGCAGGAGGGTTATAAATCATGAATAAGTAAAAGAGAGTGAATTTGTCCTTGGAAACTGAATAAACTGTTTAGCAATAAGCTTGATGTGGTAGCTTTTGTTGTGGTTGAAATGCAATGCAAATTGTGGATACATAAAGTAAGGAAATGGTGTATTGATTATATACACGAACAAGGTAATTGAATAGTTGAAGAACTAAGACAAAGAGGTACATGATTCTTGTCATACCTGGAATGGACAAATGAGAAAGTTAAGTCAGTTCTCATATCATGATTCTACAATTGAAGCAATAATCACTGATGTTGTAATAAAGCTTATACTGTGATAAGTTAGAAAAGAAGCAGTGTTGTGACGCAATATGAGTTGTAGAATGTTCGCTTGCATCGGCTTCTTAAAGATTTTTTCCTTTCTTTGACAGCTAAAATACTTCCAGTCGTAAAAAACCAACACCTTTTGCTTTGCACACTCTTGATCGGCAACTCTTTAGCAATGGAGGTTTGTGTGCCAGTACTTATTTGGCAATAGTTATCCTTTTATTACCCGTGCTTACTTATTTATTACTTCTCTCCTTTTCCTTTGTAGTCTCTTCCAATTTTCTTGGACAAGCTTGTACCTTCATGGGCAGCTGTACTGGTATCTGTGACACTGATTCTCATGTTTGGAGAGGTGGTCTATTCTACTCATCAACTTAATATTTCAGCTTGTTAGCTATTGCATTTGCTCGTCTCTTGTTCTGTAACTAGGCTTTGTTGCTTTTATGTTTGCAGATAATT</genome_strand>
        <mrna_strand>AAAAAAAAAAGAATCACTTACAAATAATTTTGTAAGTTAGGTAGCTTGAATGATTTTGGGTTCTTGATTAAAAAACAAATCT-AAAAGTTTAAAATTCC-AAAAAAAAAAATCAAATCTTTTTCCAAGTTTTCAGATTTTCTTTGAACTTGGGGAAAAGAAAATGGCAGATGTGCCTTGTTGTGGAACAGAATTTTTTGTGTTTATTTTGGTTATTATAGGATTGGTGTTGTTTGCTGGTTTGATGGCTGGTCTTACACTTGGTCTTATGTCTCTTGGACTTGTCGACCTTGAAGTTCTCAGCAAATCTGGTCGTCCACAAGATCGTATTCATGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATACTTCCAGTCGTAAAAAACCAACACCTTTTGCTTTGCACACTCTTGATCGGCAACTCTTTAGCAATGGAG.......................................................................................TCTCTTCCAATTTTCTTGGACAAGCTTGTACCTTCATGGGCAGCTGTACTGGTATCTGTGACACTGATTCTCATGTTTGGAGAG.....................................................................................................ATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379432" ref_strand="+" ref_description="SGN-E379432 [TUS-3-O6](-)">
      <seq>cttcacaacatcagcatgttgcagttgatggctagtattttggggattcaaatctggaatattgtgcatccctggtaatgtttagtttggtatatgtatctagggagatgaaaacctttgcagaatacaaaaactaagcctcagtcccacacaagttggggtcgcataaacggtgtcacagggtatatacagcacaagagatcatttgggaacatcacctacctgctccaagaatgacaacttgtgctcctccgccatcaaaagaagtacgtctcccctgcaagtaactcagctagtggatcatggatcacatgtttccatagcgcccttccagctgcagtttgacatgctgattgtctcaaagaatcccaatcatgttcgacagctgaatgaacttctctgatggtttcagtgtacaaagaatcaggtatggatagtaaaccaacttgcaaacgggtaaaggagtaactcgcccccatttcactccgtcatctctatactcgtcttatcgaatcatcagttttggtaccaattatcattgtgatattttgttcatgcacctaacaccatcatcaaagaggaggtacatctcaacaactggcacatccacatccactaccttaattatggctcaattatatatctatctatacatatattatatgtgtgtgtatatattaaacacatatttatattattaaccatagacctaggaagtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="10683" stop="8350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10383" g_stop="10211" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10210" i_stop="9992" i_length="219">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.636" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9991" g_stop="9899" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="266" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9898" i_stop="9780" i_length="119">
            <donor d_prob="0.671" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9779" g_stop="9619" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="427" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9618" i_stop="8944" i_length="675">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8943" g_stop="8650" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="721" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E379432" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10383" e_stop="10211"/>
          <exon e_start="9991" e_stop="9899"/>
          <exon e_start="9779" e_stop="9619"/>
          <exon e_start="8943" e_stop="8650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACAACATCAGCATGTTGCAGTTGATGGCTAGTATTTTGGGGATTCAAATCTGGAATATTGTTGCAT-CCTGGTAATGTTTAGTTTGGTATATGTATCTAGGGAGATGAAAACCTTTGCAGAATACAAAAACTAAGCCTCAGTCCCACACAAGTTGGGGTCGCATAAACGGGTGAGTGGACATTTGATCAGTTCAGTGACTGACTACTAATAATGAGCATATGCATAAGTGATATCAGTATATTGTCACAATTCGATTAGTAAGTTCATTAATTTGTTGTTACGAAGCAGTGCTGAATGACACCCTTACTAAAGTCTGTCTCCGCCCCACTGACTACTATTTACCAAAGATAAACTAGTCAATTTGTCATTAAATATACATTCATTTTAGTGTCACAGGGTATATACAGCACAAGAGATCATTTGGGAACATCACCTACCTGCTCCAAGAATGACAACTTGTGCTCCTCCGCCATCAAAAGAAGTAAGAGCTGCTTCAATTCCCTTATCAAACCATAGTGTCCTTACTGCAATGATAACTCCAGAAATCTCTTTAGCATTGTTGAGGATATCTTTCTTAATCTTCTCATACAATTTTTTCAGGTACGTCTCCCCTGCAAGTAACTCAGCTAGTGGATCATGGATCACATGTTTCCATAGCGCCCTTCCAGCTGCAGTTTGACATGCTGATTGTCTCAAAGAATCCCAATCATGTTCGACAGCTGAATGAACTTCTCTGATGGTTTCAGTGTACAAAGAATCAGGTAGTATAAAATCAGGCAAGCTACCATTTTCTTGATTAGACATTATTATACTGATTTTTAGTGACTACTAATAGAAGAGAAGAACTAAAGGGATAAGCCATGCAATATATACAACAGAAATAAAAGAGTACTGTTGTAGAGGAAAAAGAATTGTTATTAAGGATAAGGAAAGACAGCCACACACACAACCAATGTCTCAGAAAAGTTATTCAATCATATCCAGCTATTCTCTGTGTTAAGTAAATTAAAGGAAGGTAATGAAGCAGGCCACGACTACCATCAATTTTCATCCCTTTGTCCTACTACTCTTTGATTCTTTCCCCCCTCTTAACTATATCTTTAAAAGGTTAGCAATTTTTTTATCCAAAAGTAGCATAAAAAGAACCCCACATGTTAGGATGAGAACAACTCAAAGATACTTTTAACATGATGTGATATTCTCCAAAAAAAACCTTTAACCATTCATTTCGTACACGGACTACATTGTCATGGAATTTTAGTTCTTGGACTAGTTTATCCCATCGTGGAGGTCTGTGTGTTAGATAAGGTGGGATATTCAAGATTAAGCATGAAATTAGATTTATACTGTATTTGGTTGACGATATAAATTGTATGTAGCTTATTTCTCTCGTCATATTTGATGTGGTCCACGGGCTTCCTCTTATACGTTTGCAGGTATGGATAGTAAACCAACTTGCAAACGGGTAAAGGAGTAACTCGCCCCCATTTCACTCCGTCATCTCTATACTCGTCTTATCGAATCATCAGTTTTGGTACCAATTATCATTGTGATATTTTGTTCATGCACCTAACACCATCATCAAAGAGGAGGTACATCTCAACAACTGGCACATCCACATCCACTACCTTAATTATGGCTCAATTATATATCTATCTATACATATATTATATGTGTGTGTATATATTAAACACATATTTATATTATTAACCATAGGCCTAGGAAGTCAG</genome_strand>
        <mrna_strand>CTTCACAACATCAGCATGTTGCAGTTGATGGCTAGTATTTTGGGGATTCAAATCTGGAATATTG-TGCATCCCTGGTAATGTTTAGTTTGGTATATGTATCTAGGGAGATGAAAACCTTTGCAGAATACAAAAACTAAGCCTCAGTCCCACACAAGTTGGGGTCGCATAAACGG...........................................................................................................................................................................................................................TGTCACAGGGTATATACAGCACAAGAGATCATTTGGGAACATCACCTACCTGCTCCAAGAATGACAACTTGTGCTCCTCCGCCATCAAAAGAA.......................................................................................................................GTACGTCTCCCCTGCAAGTAACTCAGCTAGTGGATCATGGATCACATGTTTCCATAGCGCCCTTCCAGCTGCAGTTTGACATGCTGATTGTCTCAAAGAATCCCAATCATGTTCGACAGCTGAATGAACTTCTCTGATGGTTTCAGTGTACAAAGAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGATAGTAAACCAACTTGCAAACGGGTAAAGGAGTAACTCGCCCCCATTTCACTCCGTCATCTCTATACTCGTCTTATCGAATCATCAGTTTTGGTACCAATTATCATTGTGATATTTTGTTCATGCACCTAACACCATCATCAAAGAGGAGGTACATCTCAACAACTGGCACATCCACATCCACTACCTTAATTATGGCTCAATTATATATCTATCTATACATATATTATATGTGTGTGTATATATTAAACACATATTTATATTATTAACCATAGACCTAGGAAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342178" ref_strand="+" ref_description="SGN-E342178 [cTOF-10-P17]">
      <seq>atgtctaatcaagaaaatggtagcttgcctgattttatactacctgattctttgtacactgaaaccatcagagaagttcattcagctgtcgaacatgattgggattctttgagacaatcagcatgtcaaactgcagctggaagggcgctatggaaacatgtgatccatgatccactagctgagttacttgcaggggagacgtacctgaaaaaattgtatgagaagattaagaaagatatcctcaacaatgctaaagagatttctggagttatcattgcagtaaggacactatggtttgataagggaattgaagcagctcttacttcttttgatggcggaggagcacaagttgtcattcttggagcaggtatggatacaagggcatatcgcttgagttgcttgaaagacagcaacatatttgaggttgattttccagaggtcttgcagatgaaaaccactattgtagaggcagcagcagaaacaacagatgaacaaaagcaccaactaatgatggcaaaatcattgaacagagtggcagcggacctgagagaaaagaactggcttgaaaagcttcaagaatcaggcttaactctaaatacgaatacagtgtgggtattagagggaattctctactatctttctcactcaaatgcaatggaagtactaaagattatagcaaataactgtacctctgctcatacagtactcttagcggacttcatgaacaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="9276" stop="11321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9576" g_stop="9942" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9943" i_stop="10657" i_length="715">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10658" g_stop="11022" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="732" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E342178" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9576" e_stop="9942"/>
          <exon e_start="10658" e_stop="11022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTAATCAAGAAAATGGTAGCTTGCCTGATTTTATACTACCTGATTCTTTGTACACTGAAACCATCAGAGAAGTTCATTCAGCTGTCGAACATGATTGGGATTCTTTGAGACAATCAGCATGTCAAACTGCAGCTGGAAGGGCGCTATGGAAACATGTGATCCATGATCCACTAGCTGAGTTACTTGCAGGGGAGACGTACCTGAAAAAATTGTATGAGAAGATTAAGAAAGATATCCTCAACAATGCTAAAGAGATTTCTGGAGTTATCATTGCAGTAAGGACACTATGGTTTGATAAGGGAATTGAAGCAGCTCTTACTTCTTTTGATGGCGGAGGAGCACAAGTTGTCATTCTTGGAGCAGGTAGGTGATGTTCCCAAATGATCTCTTGTGCTGTATATACCCTGTGACACTAAAATGAATGTATATTTAATGACAAATTGACTAGTTTATCTTTGGTAAATAGTAGTCAGTGGGGCGGAGACAGACTTTAGTAAGGGTGTCATTCAGCACTGCTTCGTAACAACAAATTAATGAACTTACTAATCGAATTGTGACAATATACTGATATCACTTATGCATATGCTCATTATTAGTAGTCAGTCACTGAACTGATCAAATGTCCACTCACCCGTTTATGCGACCCCAACTTGTGTGGGACTGAGGCTTAGTTTTTGTATTCTGCAAAGGTTTTCATCTCCCTAGATACATATACCAAACTAAACATTACCAGGATGCAACAATATTCCAGATTTGAATCCCCAAAATACTAGCCATCAACTGCAACATGCTGATGTTGTGAAGTGACATATAGTCTTTCAGTGAAAACACAGTCGTTCCATTTAGGAGCAACTATGACTATGTTTGGATAAAAGATGATAAGCGGAATGTAATTTAATTCCTCTGAGTTATGGGCTCAACATGGAGATTGAACACTGAATGGACATAGATTGTCCACCACAAGAGACTCCTCATATTTCACCTAGCATTTTTATTGCTCACCCCTCGGAAGCTAGTTGATTCCATTTAGCAAAAAATGTTACAGAGTAAACAAATGATGTCTGTTCTTTATCTGCAGGTATGGATACAAGGGCATATCGCTTGAGTTGCTTGAAAGACAGCAACATATTTGAGGTTGATTTTCCAGAGGTCTTGCAGATGAAAACCACTATTGTAGAGGCAGCAGCAGAAACAACAGATGAACAAAAGCACCAACTAATGATGGCAAAATCATTGAACAGAGTGGCAGCGGACCTGAGAGAAAAGAACTGGCTTGAAAAGCTTCAAGAATCAGGCTTAACTCTAAATACGAATACAGTGTGGGTATTAGAGGGAATTCTCTACTATCTTTCTCACTCAAATGCAATGGAAGTACTAAAGATTATAGCAAATAACTGTACCTCTGCTCATACAGTACTCTTAGCGGACTTCATGAACAAGCAA</genome_strand>
        <mrna_strand>ATGTCTAATCAAGAAAATGGTAGCTTGCCTGATTTTATACTACCTGATTCTTTGTACACTGAAACCATCAGAGAAGTTCATTCAGCTGTCGAACATGATTGGGATTCTTTGAGACAATCAGCATGTCAAACTGCAGCTGGAAGGGCGCTATGGAAACATGTGATCCATGATCCACTAGCTGAGTTACTTGCAGGGGAGACGTACCTGAAAAAATTGTATGAGAAGATTAAGAAAGATATCCTCAACAATGCTAAAGAGATTTCTGGAGTTATCATTGCAGTAAGGACACTATGGTTTGATAAGGGAATTGAAGCAGCTCTTACTTCTTTTGATGGCGGAGGAGCACAAGTTGTCATTCTTGGAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGATACAAGGGCATATCGCTTGAGTTGCTTGAAAGACAGCAACATATTTGAGGTTGATTTTCCAGAGGTCTTGCAGATGAAAACCACTATTGTAGAGGCAGCAGCAGAAACAACAGATGAACAAAAGCACCAACTAATGATGGCAAAATCATTGAACAGAGTGGCAGCGGACCTGAGAGAAAAGAACTGGCTTGAAAAGCTTCAAGAATCAGGCTTAACTCTAAATACGAATACAGTGTGGGTATTAGAGGGAATTCTCTACTATCTTTCTCACTCAAATGCAATGGAAGTACTAAAGATTATAGCAAATAACTGTACCTCTGCTCATACAGTACTCTTAGCGGACTTCATGAACAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379272" ref_strand="+" ref_description="SGN-E379272 [TUS-3-O6]">
      <seq>ctgaagcaaatacaacctacaacatggggttccatctgggtgagtttgaagtgacctgggcaagttgcgcaacttgttgaacaaatttagtgggtcatgcaacaacccgaaatgtgcatctgggtcaccaatttgagaaagtttaacatcagaaaatcctagtgatggcaataactcatcaggatagtcgctatagaaatggaaatttgagctggacattgtggttgattgcttgttcatgaagtccgctaagagtactgtatgagcagaggtccgctgccactctgttcaatgattttgccatcattagttggtgcttttgttcatctgttgtttctgctgctgcctctacaatagtggttttcatctgcaagacctctggaaaatcaacctcaaatatgttgctgtctttcaagcaactcaagcgatatgcccttgtatccatacctgcagataaagaacagacatcattggtttactctgtaacattttttgctaaatggaatcaactagcttccgaggggtgagcaataaaaatgctaggtgaaatatgaggagtctcttgtggtggacaatctatgtccattcagtgttcaatctccatgttgagcccataactcagaggaattaaattacattccgcttatcatcttttatccaaacatagtcatagttgctcctaaatggaacgactgtgttttcactgaaagactatatgtcacttcacaacatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="11550" stop="10070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11250" g_stop="10980" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10979" i_stop="10834" i_length="146">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.170" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10833" g_stop="10370" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="735" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E379272" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11250" e_stop="10980"/>
          <exon e_start="10833" e_stop="10370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCAAATACAACCTACAACATGGGGTTCCATCTGGGTGAGTTTGAAGTGACCTGGGCAAGTTGCGCAACTCGTTGAACAAATTTAGTGGGTCATGCAACAACCCGAAATGTGCATCTGGGTCACCAATTTGAGAAAGTTTAACATCAGAAAATCCTAGTGATGGCAATAACTCATCAGGATAGTCGCTATAGAAATGGAAATTTGAGCTGGACATTGTGGTTGATTGCTTGTTCATGAAGTCCGCTAAGAGTACTGTATGAGCAGAGGTACAGTTATTTGCTATAATCTTTAGTACTTCCATTGCATTTGAGTGAGAAAGATAGTAGAGAATTCCCTCTAATACCCACACTGTATTCGTATTTAGAGTTAAGCCTGATTCTTGAAGCTTTTCAAGCCAGTTCTTTTCTCTCAGGTCCGCTGCCACTCTGTTCAATGATTTTGCCATCATTAGTTGGTGCTTTTGTTCATCTGTTGTTTCTGCTGCTGCCTCTACAATAGTGGTTTTCATCTGCAAGACCTCTGGAAAATCAACCTCAAATATGTTGCTGTCTTTCAAGCAACTCAAGCGATATGCCCTTGTATCCATACCTGCAGATAAAGAACAGACATCATTTGTTTACTCTGTAACATTTTTTGCTAAATGGAATCAACTAGCTTCCGAGGGGTGAGCAATAAAAATGCTAGGTGAAATATGAGGAGTCTCTTGTGGTGGACAATCTATGTCCATTCAGTGTTCAATCTCCATGTTGAGCCCATAACTCAGAGGAATTAAATTACATTCCGCTTATCATCTTTTATCCAAACATAGTCATAGTTGCTCCTAAATGGAACGACTGTGTTTTCACTGAAAGACTATATGTCACTTCACAACATCAG</genome_strand>
        <mrna_strand>CTGAAGCAAATACAACCTACAACATGGGGTTCCATCTGGGTGAGTTTGAAGTGACCTGGGCAAGTTGCGCAACTTGTTGAACAAATTTAGTGGGTCATGCAACAACCCGAAATGTGCATCTGGGTCACCAATTTGAGAAAGTTTAACATCAGAAAATCCTAGTGATGGCAATAACTCATCAGGATAGTCGCTATAGAAATGGAAATTTGAGCTGGACATTGTGGTTGATTGCTTGTTCATGAAGTCCGCTAAGAGTACTGTATGAGCAGAG..................................................................................................................................................GTCCGCTGCCACTCTGTTCAATGATTTTGCCATCATTAGTTGGTGCTTTTGTTCATCTGTTGTTTCTGCTGCTGCCTCTACAATAGTGGTTTTCATCTGCAAGACCTCTGGAAAATCAACCTCAAATATGTTGCTGTCTTTCAAGCAACTCAAGCGATATGCCCTTGTATCCATACCTGCAGATAAAGAACAGACATCATTGGTTTACTCTGTAACATTTTTTGCTAAATGGAATCAACTAGCTTCCGAGGGGTGAGCAATAAAAATGCTAGGTGAAATATGAGGAGTCTCTTGTGGTGGACAATCTATGTCCATTCAGTGTTCAATCTCCATGTTGAGCCCATAACTCAGAGGAATTAAATTACATTCCGCTTATCATCTTTTATCCAAACATAGTCATAGTTGCTCCTAAATGGAACGACTGTGTTTTCACTGAAAGACTATATGTCACTTCACAACATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298127" ref_strand="+" ref_description="SGN-E298127 [cLEW-9-G11]">
      <seq>ttgtatccatacctgcagataaagaacagacatcattggtttactctgtaacattttttgctaaatggaatcaactagcttccgaggggtgagcaataaaaatgctaggtgaaatatgaggagtctcttgtggtggacaatctatgtccattcagtgttcaatctccatgttgagcccataactcaaaggaattaaattacattccgcttatcatctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="10969" stop="10149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10669" g_stop="10449" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E298127" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10669" e_stop="10449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATCCATACCTGCAGATAAAGAACAGACATCATTTGTTTACTCTGTAACATTTTTTGCTAAATGGAATCAACTAGCTTCCGAGGGGTGAGCAATAAAAATGCTAGGTGAAATATGAGGAGTCTCTTGTGGTGGACAATCTATGTCCATTCAGTGTTCAATCTCCATGTTGAGCCCATAACTCAGAGGAATTAAATTACATTCCGCTTATCATCTTTTA</genome_strand>
        <mrna_strand>TTGTATCCATACCTGCAGATAAAGAACAGACATCATTGGTTTACTCTGTAACATTTTTTGCTAAATGGAATCAACTAGCTTCCGAGGGGTGAGCAATAAAAATGCTAGGTGAAATATGAGGAGTCTCTTGTGGTGGACAATCTATGTCCATTCAGTGTTCAATCTCCATGTTGAGCCCATAACTCAAAGGAATTAAATTACATTCCGCTTATCATCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208292" ref_strand="+" ref_description="SGN-E208292 [cLEC-37-J24]">
      <seq>ctgaagcaaatacaacctacaacatggggttccatctgggtgagtttgaagtgacctgggcaagttgcgcaacttgttgaacaaatttagtgggtcatgcaacaacccgaaatgtgcatctgggtcaccaatttgagaaagtttaacatcagaaaatcctagtgatggcaataactcatcaagatagtcgctatagaaatggaaatttgagctggacattgtggttgattgcttgttcatgaagtccgctaagagtactgtatgagcagaggtccgctgccactctgttcaatgattttgccatcattagttggtgcttttgttcatctggtgtttctgctgctgcctctacaatagtggttttcatctgcaagacctctggaaaatcaacctcaaatatgttgctgtctttcaagcaactcaagcgatatgcccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="11550" stop="10367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11250" g_stop="10980" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10979" i_stop="10834" i_length="146">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.170" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10833" g_stop="10668" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="437" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E208292" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11250" e_stop="10980"/>
          <exon e_start="10833" e_stop="10668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCAAATACAACCTACAACATGGGGTTCCATCTGGGTGAGTTTGAAGTGACCTGGGCAAGTTGCGCAACTCGTTGAACAAATTTAGTGGGTCATGCAACAACCCGAAATGTGCATCTGGGTCACCAATTTGAGAAAGTTTAACATCAGAAAATCCTAGTGATGGCAATAACTCATCAGGATAGTCGCTATAGAAATGGAAATTTGAGCTGGACATTGTGGTTGATTGCTTGTTCATGAAGTCCGCTAAGAGTACTGTATGAGCAGAGGTACAGTTATTTGCTATAATCTTTAGTACTTCCATTGCATTTGAGTGAGAAAGATAGTAGAGAATTCCCTCTAATACCCACACTGTATTCGTATTTAGAGTTAAGCCTGATTCTTGAAGCTTTTCAAGCCAGTTCTTTTCTCTCAGGTCCGCTGCCACTCTGTTCAATGATTTTGCCATCATTAGTTGGTGCTTTTGTTCATCTGTTGTTTCTGCTGCTGCCTCTACAATAGTGGTTTTCATCTGCAAGACCTCTGGAAAATCAACCTCAAATATGTTGCTGTCTTTCAAGCAACTCAAGCGATATGCCCTT</genome_strand>
        <mrna_strand>CTGAAGCAAATACAACCTACAACATGGGGTTCCATCTGGGTGAGTTTGAAGTGACCTGGGCAAGTTGCGCAACTTGTTGAACAAATTTAGTGGGTCATGCAACAACCCGAAATGTGCATCTGGGTCACCAATTTGAGAAAGTTTAACATCAGAAAATCCTAGTGATGGCAATAACTCATCAAGATAGTCGCTATAGAAATGGAAATTTGAGCTGGACATTGTGGTTGATTGCTTGTTCATGAAGTCCGCTAAGAGTACTGTATGAGCAGAG..................................................................................................................................................GTCCGCTGCCACTCTGTTCAATGATTTTGCCATCATTAGTTGGTGCTTTTGTTCATCTGGTGTTTCTGCTGCTGCCTCTACAATAGTGGTTTTCATCTGCAAGACCTCTGGAAAATCAACCTCAAATATGTTGCTGTCTTTCAAGCAACTCAAGCGATATGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733419" ref_strand="+" ref_description="SGN-E733419 [LB04DG05]">
      <seq>cccataaacaacagatgaacaaaagcaccaactaatgatggcaaaatcattgaacagagtggcagcggacctgagagaaaagaactggcttgaaaagcttcaagaatcaggcttaactctaaatacgaatacagtgtgggtattagagggaattctctactatctttctcactcaaatgcaatggaagtactaaagattatagcaaataactgtacctctgctcatacagtactcttagcggacttcatgaacaagcaatcaaccacaatgtccagctcaaatttccatttctatagcgactatcctgatgagttattgccatcaataggattttctgatgttaaactttctcaaattggtgacccagatgcacatttcgggttgttgcatgacccactaaatttgttcaacaagttgcgcaacttgcccaggtcacttcaaactcacccagatggaaccccatgttgtaggttgtatttgcttcaggcttctggagaaccaccaaacaagactattttgtgaatattataagaatggttcaccaataaagtctaacttgctgttagagcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="10466" stop="11639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10764" g_stop="11346" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E733419" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10764" e_stop="11346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAAACAACAGATGAACAAAAGCACCAACTAATGATGGCAAAATCATTGAACAGAGTGGCAGCGGACCTGAGAGAAAAGAACTGGCTTGAAAAGCTTCAAGAATCAGGCTTAACTCTAAATACGAATACAGTGTGGGTATTAGAGGGAATTCTCTACTATCTTTCTCACTCAAATGCAATGGAAGTACTAAAGATTATAGCAAATAACTGTACCTCTGCTCATACAGTACTCTTAGCGGACTTCATGAACAAGCAATCAACCACAATGTCCAGCTCAAATTTCCATTTCTATAGCGACTATCCTGATGAGTTATTGCCATCACTAGGATTTTCTGATGTTAAACTTTCTCAAATTGGTGACCCAGATGCACATTTCGGGTTGTTGCATGACCCACTAAATTTGTTCAACGAGTTGCGCAACTTGCCCAGGTCACTTCAAACTCACCCAGATGGAACCCCATGTTGTAGGTTGTATTTGCTTCAGGCTTCTGGAGAACCACCAAACAAGACTATTTTGTGAATATTATAAGAATGGTTCACCAATAAAGTCTAACTTGCTGTTAGAGCTTAGAAGCACCTA</genome_strand>
        <mrna_strand>CCCATAAACAACAGATGAACAAAAGCACCAACTAATGATGGCAAAATCATTGAACAGAGTGGCAGCGGACCTGAGAGAAAAGAACTGGCTTGAAAAGCTTCAAGAATCAGGCTTAACTCTAAATACGAATACAGTGTGGGTATTAGAGGGAATTCTCTACTATCTTTCTCACTCAAATGCAATGGAAGTACTAAAGATTATAGCAAATAACTGTACCTCTGCTCATACAGTACTCTTAGCGGACTTCATGAACAAGCAATCAACCACAATGTCCAGCTCAAATTTCCATTTCTATAGCGACTATCCTGATGAGTTATTGCCATCAATAGGATTTTCTGATGTTAAACTTTCTCAAATTGGTGACCCAGATGCACATTTCGGGTTGTTGCATGACCCACTAAATTTGTTCAACAAGTTGCGCAACTTGCCCAGGTCACTTCAAACTCACCCAGATGGAACCCCATGTTGTAGGTTGTATTTGCTTCAGGCTTCTGGAGAACCACCAAACAAGACTATTTTGTGAATATTATAAGAATGGTTCACCAATAAAGTCTAACTTGCTGTTAGAGCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322339" ref_strand="+" ref_description="SGN-E322339 [cTOB-24-M12]">
      <seq>aataccgttgcgtttcaaccaccatgaccccgctgagtatcacccttatcccttcctccaccgtgcctccgacgcccctgaaacctccgccatcggtgaaacaaccgccgcctacgccgccgatcgaagcaaagtttttcagccgtagaaacgccgtcgtttggctctcactcattgctcctctaactcatcctgcctccgctttgtccttcggcatatcaggaccaaaagaatggctgagagatcagaagaagaagactgcgaagtaccttttggctccaatcgaggcttctagaaacatcctccgatatgctaatctcttacttactagaactgaaccagagtttggtgaaaaggaacttgaagaagttcagagcttattgaggtctgctgcaagggattgtgtgcctcaagagaggaattccttcgttcagtttcaatcaaaatcaggagttgaggtttgcacattccagctggttgtgaaaaatgcttcttctttgcttcctgacaaggacccggtaaagttagcagctgaagccaaacttatcgatctcataaggtcttttgcttctctcagtgacatggcaaatgaatttgatgtgcaagttgcttctaatagacaaaaggttgcaaatgctctcatggatacactgacctgtctggacaactttgagcaaggtggtcaggaatgccttgaaagttgattatccttattcaagtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="14914" stop="12153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14614" g_stop="14396" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14395" i_stop="14313" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14312" g_stop="14205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="327" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14204" i_stop="14111" i_length="94">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14110" g_stop="13980" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="458" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13979" i_stop="13364" i_length="616">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13363" g_stop="13263" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="559" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13262" i_stop="12808" i_length="455">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12807" g_stop="12748" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="619" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12747" i_stop="12557" i_length="191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12556" g_stop="12453" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="723" r_length="104" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E322339" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14614" e_stop="14396"/>
          <exon e_start="14312" e_stop="14205"/>
          <exon e_start="14110" e_stop="13980"/>
          <exon e_start="13363" e_stop="13263"/>
          <exon e_start="12807" e_stop="12748"/>
          <exon e_start="12556" e_stop="12453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTTTCCTTCGGCATATGTATTTACTTATCTCGAGTTTTTTTTAAGTTGAAATTAAACATAGTCTAACTGAATTGTTTTGGTTTGCGAAAATGTTCTCAGCAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTAGTAATAACATACTGTGTATTTTGAAATAACCTCTTTTTTTTATTTTTTATAATACTGTTATGGTGAGATGAATCAGTTGCTTTGTATTTGACAGCTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAGGTTTGAATTTTGACTTATGATTGAATCATAATTTACCAGCTTCTTGTTGATTTTGATGGCATTTTTAATGACATTTTAACAAGTGAGTACTTATTTGAGTTAAATTGCTAATGTACTTATTTCTAAGCCAAGTGCACTAGTGGTTTGACTTCGCGTATTGAGAGTTTTGCTAAGCATAGCCAGTCTCGAGAGGGTGTGGTAGGTTGATGGATAATGCAAAAATAATCAACAGCGAAAAATGATCTAATTATGTAATTGAATTGAGTTGCATTTATACCGTATACGGATGATTCATATGCCCGATCTCAATTGTTATAGTTGATTGATTGAGTGTATAAGTGGTGTGGACATGTTACTAGTTTCTATTACATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTAGATTTTGTTCTATGGTGATGCAATTTTTTAGAGTGGCGTGTTACATAGGGAGATGAGAAGCTGTGGAAACAAAAGTAAATATTTAAGCAAAAAAGAGTAGTTAGGATTCACTCTATTTTTTGGTTCTTATATCTTTTTGACCTATGTGTGTGTTGTTTGTGGCTCATATGAAAAATTCCTAATTTTCAGGTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAGGTAGCTAGTAAAACTTGTTGTGACCGATATATCTTGTATGTCGAGCTATAAACACTTCAAGAAGTAGGTTGATCTCTGTACATTTAAGGTGGAGTTGTCTTATCTGTTCATTAGCCGATGTTCTAGAAAATGTTTTTGTTATAGTAGCTTGGTTTTTGTCCACATATCGAAGCAACTAATCTTACCTTCAGTACCTGCTGGTGGCTAAAAAATCTGGGTTGGGAAATTTCATATTACGTGTTACCATAGAACTATCCTTATTAGGTACTGATTTAGTTTCTAAAAGGATATGGAAAGAGCGTACATTCATTGCCTATTTTCCATATTTCACGTGCTCTGGAGACATTAAAATTCGGTCTTGAGTTATCACAATGACTCATCTATGCATGCATGTGTTGGAGGGATTTGACATAAATTATTTGTCACAATGCTTTCTGTATTTCTTGTGGGTGCAGGTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTAATAGGTATAATTAGTGATATGCAACAATTTCTATTTGTACTCTTCTCAAAACTTGTGTTGATTTATTTTAAGCAAAATTTTACATTTTATAAGACTGATAAACATGATAACAAGCTAGATATTTCATGTTTGATTCTTCCTTTATCTTTTGATCATACCGTCTTATGGCATGAACATGCTATTTTTTTTAAACAGACAAAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCTGGACAACTTTGAGCAAGGTGTCAAGGAATGCCTTGAAGTTTGATTATCCTTATTCAAGTCAA</genome_strand>
        <mrna_strand>AATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTGTCCTTCGGCATAT...................................................................................CAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTA..............................................................................................CTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTAATAG...............................................................................................................................................................................................ACAAAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCTGGACAACTTTGAGCAAGGTGGTCAGGAATGCCTTGAAAGTTGATTATCCTTATTCAAGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320211" ref_strand="+" ref_description="SGN-E320211 [cTOB-21-A8]">
      <seq>aataccgttgcgtttcaaccaccatgaccccgctgagtatcacccttatcccttcctccaccgtgcctccgacgcccctgaaacctccgccatcggtgaaacaaccgccgcctacgccgccgatcgaagcaaagtttttcagccgtagaaacgccgtcgtttggctctcactcattgctcctctaactcatcctgcctccgctttgtccttcggcatatcaggaccaaaagaatggctgagagatcagaagaagaagactgcgaagtaccttttggctccaatcgaggcttctagaaacatcctccgatatgctaatctcttacttactagaactgaaccagagtttggtgaaaaggaacttgaagaagttcagagcttattgaggtctgctgcaagggattgtgtgcctcaagagaggaattccttcgttcagtttcaatcaaaatcaggagttgaggtttgcacattccagctggttgtgaaaaatgcttcttctttgcttcctgacaaggacccggtnaagttagcagctgaagccaaacttatcgatctcataaggtcttttgcttctctcagtgacatggcaaatgaaattgatgtgcaagttgctttctatagacnaaaggttgcaaatgctctcatggatacactgacctgtctggacactttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="14914" stop="12202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14614" g_stop="14396" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14395" i_stop="14313" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14312" g_stop="14205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="327" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14204" i_stop="14111" i_length="94">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14110" g_stop="13980" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="458" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13979" i_stop="13364" i_length="616">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13363" g_stop="13263" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="559" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13262" i_stop="12808" i_length="455">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12807" g_stop="12748" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="619" r_length="60" r_score="0.933"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12747" i_stop="12557" i_length="191">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12556" g_stop="12502" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="673" r_length="54" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E320211" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14614" e_stop="14396"/>
          <exon e_start="14312" e_stop="14205"/>
          <exon e_start="14110" e_stop="13980"/>
          <exon e_start="13363" e_stop="13263"/>
          <exon e_start="12807" e_stop="12748"/>
          <exon e_start="12556" e_stop="12502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTTTCCTTCGGCATATGTATTTACTTATCTCGAGTTTTTTTTAAGTTGAAATTAAACATAGTCTAACTGAATTGTTTTGGTTTGCGAAAATGTTCTCAGCAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTAGTAATAACATACTGTGTATTTTGAAATAACCTCTTTTTTTTATTTTTTATAATACTGTTATGGTGAGATGAATCAGTTGCTTTGTATTTGACAGCTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAGGTTTGAATTTTGACTTATGATTGAATCATAATTTACCAGCTTCTTGTTGATTTTGATGGCATTTTTAATGACATTTTAACAAGTGAGTACTTATTTGAGTTAAATTGCTAATGTACTTATTTCTAAGCCAAGTGCACTAGTGGTTTGACTTCGCGTATTGAGAGTTTTGCTAAGCATAGCCAGTCTCGAGAGGGTGTGGTAGGTTGATGGATAATGCAAAAATAATCAACAGCGAAAAATGATCTAATTATGTAATTGAATTGAGTTGCATTTATACCGTATACGGATGATTCATATGCCCGATCTCAATTGTTATAGTTGATTGATTGAGTGTATAAGTGGTGTGGACATGTTACTAGTTTCTATTACATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTAGATTTTGTTCTATGGTGATGCAATTTTTTAGAGTGGCGTGTTACATAGGGAGATGAGAAGCTGTGGAAACAAAAGTAAATATTTAAGCAAAAAAGAGTAGTTAGGATTCACTCTATTTTTTGGTTCTTATATCTTTTTGACCTATGTGTGTGTTGTTTGTGGCTCATATGAAAAATTCCTAATTTTCAGGTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAGGTAGCTAGTAAAACTTGTTGTGACCGATATATCTTGTATGTCGAGCTATAAACACTTCAAGAAGTAGGTTGATCTCTGTACATTTAAGGTGGAGTTGTCTTATCTGTTCATTAGCCGATGTTCTAGAAAATGTTTTTGTTATAGTAGCTTGGTTTTTGTCCACATATCGAAGCAACTAATCTTACCTTCAGTACCTGCTGGTGGCTAAAAAATCTGGGTTGGGAAATTTCATATTACGTGTTACCATAGAACTATCCTTATTAGGTACTGATTTAGTTTCTAAAAGGATATGGAAAGAGCGTACATTCATTGCCTATTTTCCATATTTCACGTGCTCTGGAGACATTAAAATTCGGTCTTGAGTTATCACAATGACTCATCTATGCATGCATGTGTTGGAGGGATTTGACATAAATTATTTGTCACAATGCTTTCTGTATTTCTTGTGGGTGCAGGTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTAATAGGTATAATTAGTGATATGCAACAATTTCTATTTGTACTCTTCTCAAAACTTGTGTTGATTTATTTTAAGCAAAATTTTACATTTTATAAGACTGATAAACATGATAACAAGCTAGATATTTCATGTTTGATTCTTCCTTTATCTTTTGATCATACCGTCTTATGGCATGAACATGCTATTTTTTTTAAACAGACAAAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCTGGACAACTTTGAG</genome_strand>
        <mrna_strand>AATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTGTCCTTCGGCATAT...................................................................................CAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTA..............................................................................................CTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTNAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTTGCTTCTCTCAGTGACATGGCAAATGAAATTGATGTGCAAGTTGCTTTCTATAG...............................................................................................................................................................................................ACNAAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCTGGAC-ACTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321954" ref_strand="+" ref_description="SGN-E321954 [cTOB-29-I2]">
      <seq>accaataccgttgcgtttcaaccaccatgaccccgctgagtatcacccttatcccttcctccaccgtgcctccgacgcccctgaaacctccgccatcggtgaaacaaccgccgcctacgccgccgatcgaagcaaagtttttcagccgtagaaacgccgtcgtttggctctcactcattgctcctctaactcatcctgcctccgctttgtccttcggcatatcaggaccaaaagaatggctgagagatcagaagaagaagactgcgaagtaccttttggctccaatcgaggcttctagaaacatcctccgatatgctaatctcttacttactagaactgaaccagagtttggtgaaaaggaacttgaagaagttcagagcttattgaggtctgctgcaagggattgtgtgcctcaagagaggaattccttcgttcagtttcaatcaaaatcaggagttgaggtttgcacattccagctggttgtgaaaaatgcttcttctttgcttcctgacaaggacccggtaaagttagcagctgaaagcaaacttatcgatctcataaggtcttttgcttctctcagtgacatggcaaatgaatttgatgtgcaagttgctttctatagacaaaggttgcaaatgctctcatggatacactgacctgtctggacaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="14917" stop="12206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14617" g_stop="14396" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14395" i_stop="14313" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14312" g_stop="14205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="330" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14204" i_stop="14111" i_length="94">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14110" g_stop="13980" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="461" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13979" i_stop="13364" i_length="616">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13363" g_stop="13263" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="562" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13262" i_stop="12808" i_length="455">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12807" g_stop="12748" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="622" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12747" i_stop="12557" i_length="191">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12556" g_stop="12506" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="672" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E321954" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14617" e_stop="14396"/>
          <exon e_start="14312" e_stop="14205"/>
          <exon e_start="14110" e_stop="13980"/>
          <exon e_start="13363" e_stop="13263"/>
          <exon e_start="12807" e_stop="12748"/>
          <exon e_start="12556" e_stop="12506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTTTCCTTCGGCATATGTATTTACTTATCTCGAGTTTTTTTTAAGTTGAAATTAAACATAGTCTAACTGAATTGTTTTGGTTTGCGAAAATGTTCTCAGCAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTAGTAATAACATACTGTGTATTTTGAAATAACCTCTTTTTTTTATTTTTTATAATACTGTTATGGTGAGATGAATCAGTTGCTTTGTATTTGACAGCTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAGGTTTGAATTTTGACTTATGATTGAATCATAATTTACCAGCTTCTTGTTGATTTTGATGGCATTTTTAATGACATTTTAACAAGTGAGTACTTATTTGAGTTAAATTGCTAATGTACTTATTTCTAAGCCAAGTGCACTAGTGGTTTGACTTCGCGTATTGAGAGTTTTGCTAAGCATAGCCAGTCTCGAGAGGGTGTGGTAGGTTGATGGATAATGCAAAAATAATCAACAGCGAAAAATGATCTAATTATGTAATTGAATTGAGTTGCATTTATACCGTATACGGATGATTCATATGCCCGATCTCAATTGTTATAGTTGATTGATTGAGTGTATAAGTGGTGTGGACATGTTACTAGTTTCTATTACATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTAGATTTTGTTCTATGGTGATGCAATTTTTTAGAGTGGCGTGTTACATAGGGAGATGAGAAGCTGTGGAAACAAAAGTAAATATTTAAGCAAAAAAGAGTAGTTAGGATTCACTCTATTTTTTGGTTCTTATATCTTTTTGACCTATGTGTGTGTTGTTTGTGGCTCATATGAAAAATTCCTAATTTTCAGGTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAGGTAGCTAGTAAAACTTGTTGTGACCGATATATCTTGTATGTCGAGCTATAAACACTTCAAGAAGTAGGTTGATCTCTGTACATTTAAGGTGGAGTTGTCTTATCTGTTCATTAGCCGATGTTCTAGAAAATGTTTTTGTTATAGTAGCTTGGTTTTTGTCCACATATCGAAGCAACTAATCTTACCTTCAGTACCTGCTGGTGGCTAAAAAATCTGGGTTGGGAAATTTCATATTACGTGTTACCATAGAACTATCCTTATTAGGTACTGATTTAGTTTCTAAAAGGATATGGAAAGAGCGTACATTCATTGCCTATTTTCCATATTTCACGTGCTCTGGAGACATTAAAATTCGGTCTTGAGTTATCACAATGACTCATCTATGCATGCATGTGTTGGAGGGATTTGACATAAATTATTTGTCACAATGCTTTCTGTATTTCTTGTGGGTGCAGGTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTAATAGGTATAATTAGTGATATGCAACAATTTCTATTTGTACTCTTCTCAAAACTTGTGTTGATTTATTTTAAGCAAAATTTTACATTTTATAAGACTGATAAACATGATAACAAGCTAGATATTTCATGTTTGATTCTTCCTTTATCTTTTGATCATACCGTCTTATGGCATGAACATGCTATTTTTTTTAAACAGACAAAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCTGGACAACTT</genome_strand>
        <mrna_strand>ACCAATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTGTCCTTCGGCATAT...................................................................................CAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTA..............................................................................................CTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAAGCAAACTTATCGATCTCATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTTCTATAG...............................................................................................................................................................................................AC-AAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCTGGACAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339108" ref_strand="+" ref_description="SGN-E339108 [cTOF-6-C10]">
      <seq>ttgcgtttcaaccaccatgaccccgctgagtatcacccttatcccttcctccaccgtgcctccgacgcccctgaaacctccgccatcggtgaaacaaccgccgcctacgccgccgatcgaagcaaagtttttcagccgtagaaacgccgtcgtttggctctcactcattgctcctctaactcatcctgcctccgctttgtccttcggcatatcaggaccaaaagaatggctgagagatcagaagaagaagactgcgaagtaccttttggctccaatcgaggcttctagaaacatcctccgatatgctaatctcttacttactagaactgaaccagagtttggtgaaaaggaacttgaagaagttcagagcttattgaggtctgctgcaagggattgtgtgcctcaagagaggaattccttcgttcagtttcaatcaaaatcaggagttgaggtttgcacattccagctggttgtgaaaaatgcttcttctttgcttcctgacaaggacccggtaaagttagcagctgaagccaaacttatcgatctcataaggtcttttgcttctctcagtgacatggcaaatgaatttgatgtgcaagttgcttctaatagacaaaaggttgcaaatgctctcatggatacactgacctgtctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="14907" stop="12211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14607" g_stop="14396" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14395" i_stop="14313" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14312" g_stop="14205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="320" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14204" i_stop="14111" i_length="94">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14110" g_stop="13980" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="451" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13979" i_stop="13364" i_length="616">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13363" g_stop="13263" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="552" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13262" i_stop="12808" i_length="455">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12807" g_stop="12748" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="612" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12747" i_stop="12557" i_length="191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12556" g_stop="12511" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="658" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E339108" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14607" e_stop="14396"/>
          <exon e_start="14312" e_stop="14205"/>
          <exon e_start="14110" e_stop="13980"/>
          <exon e_start="13363" e_stop="13263"/>
          <exon e_start="12807" e_stop="12748"/>
          <exon e_start="12556" e_stop="12511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTTTCCTTCGGCATATGTATTTACTTATCTCGAGTTTTTTTTAAGTTGAAATTAAACATAGTCTAACTGAATTGTTTTGGTTTGCGAAAATGTTCTCAGCAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTAGTAATAACATACTGTGTATTTTGAAATAACCTCTTTTTTTTATTTTTTATAATACTGTTATGGTGAGATGAATCAGTTGCTTTGTATTTGACAGCTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAGGTTTGAATTTTGACTTATGATTGAATCATAATTTACCAGCTTCTTGTTGATTTTGATGGCATTTTTAATGACATTTTAACAAGTGAGTACTTATTTGAGTTAAATTGCTAATGTACTTATTTCTAAGCCAAGTGCACTAGTGGTTTGACTTCGCGTATTGAGAGTTTTGCTAAGCATAGCCAGTCTCGAGAGGGTGTGGTAGGTTGATGGATAATGCAAAAATAATCAACAGCGAAAAATGATCTAATTATGTAATTGAATTGAGTTGCATTTATACCGTATACGGATGATTCATATGCCCGATCTCAATTGTTATAGTTGATTGATTGAGTGTATAAGTGGTGTGGACATGTTACTAGTTTCTATTACATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTAGATTTTGTTCTATGGTGATGCAATTTTTTAGAGTGGCGTGTTACATAGGGAGATGAGAAGCTGTGGAAACAAAAGTAAATATTTAAGCAAAAAAGAGTAGTTAGGATTCACTCTATTTTTTGGTTCTTATATCTTTTTGACCTATGTGTGTGTTGTTTGTGGCTCATATGAAAAATTCCTAATTTTCAGGTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAGGTAGCTAGTAAAACTTGTTGTGACCGATATATCTTGTATGTCGAGCTATAAACACTTCAAGAAGTAGGTTGATCTCTGTACATTTAAGGTGGAGTTGTCTTATCTGTTCATTAGCCGATGTTCTAGAAAATGTTTTTGTTATAGTAGCTTGGTTTTTGTCCACATATCGAAGCAACTAATCTTACCTTCAGTACCTGCTGGTGGCTAAAAAATCTGGGTTGGGAAATTTCATATTACGTGTTACCATAGAACTATCCTTATTAGGTACTGATTTAGTTTCTAAAAGGATATGGAAAGAGCGTACATTCATTGCCTATTTTCCATATTTCACGTGCTCTGGAGACATTAAAATTCGGTCTTGAGTTATCACAATGACTCATCTATGCATGCATGTGTTGGAGGGATTTGACATAAATTATTTGTCACAATGCTTTCTGTATTTCTTGTGGGTGCAGGTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTAATAGGTATAATTAGTGATATGCAACAATTTCTATTTGTACTCTTCTCAAAACTTGTGTTGATTTATTTTAAGCAAAATTTTACATTTTATAAGACTGATAAACATGATAACAAGCTAGATATTTCATGTTTGATTCTTCCTTTATCTTTTGATCATACCGTCTTATGGCATGAACATGCTATTTTTTTTAAACAGACAAAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCTGGAC</genome_strand>
        <mrna_strand>TTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTGTCCTTCGGCATAT...................................................................................CAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTA..............................................................................................CTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTAATAG...............................................................................................................................................................................................ACAAAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321648" ref_strand="+" ref_description="SGN-E321648 [cTOB-25-B24]">
      <seq>tataccgttgcgtttcaccaccatgaccccgctgagtatcacccttatcccttcctccaccgtgcctccgacgcccctgaaacctccgccatcggtgaaacaaccgccgcctacgccgccgatcgaagcaaagtttttcagccgtagaaacgccgtcgtttggctctcactcattgctcctctaactcatcctgcctccgctttgtccttcggcatatcaggaccaaaagaatggctgagagatcagaagaagaagactgcgaagtaccttttggctccaatcgaggcttctagaaacatcctccgatatgctaatctcttacttactagaactgaaccagagtttggtgaaaaggaacttgaagaagttcagagcttattgaggtctgctgcaagggattgtgtgcctcaagagaggaattccttcgttcagtttcaatcaaaatcaggagttgaggtttgcacattccagctggttgtgaaaaatgcttcttctttgcttcctgacaaggacccggtaaagttagcagctgaagccaaacttatcgatctcataaggtcttttgcttctctcagtgacatggcaaatgaatttgatgtgcaagttgcttctaatagacaaaaggctgcaaatgctctcatggatacactgacctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="14913" stop="12215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14614" g_stop="14396" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14395" i_stop="14313" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14312" g_stop="14205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="326" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14204" i_stop="14111" i_length="94">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14110" g_stop="13980" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="457" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13979" i_stop="13364" i_length="616">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13363" g_stop="13263" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="558" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13262" i_stop="12808" i_length="455">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12807" g_stop="12748" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="618" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12747" i_stop="12557" i_length="191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12556" g_stop="12515" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="660" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E321648" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14614" e_stop="14396"/>
          <exon e_start="14312" e_stop="14205"/>
          <exon e_start="14110" e_stop="13980"/>
          <exon e_start="13363" e_stop="13263"/>
          <exon e_start="12807" e_stop="12748"/>
          <exon e_start="12556" e_stop="12515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTTTCCTTCGGCATATGTATTTACTTATCTCGAGTTTTTTTTAAGTTGAAATTAAACATAGTCTAACTGAATTGTTTTGGTTTGCGAAAATGTTCTCAGCAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTAGTAATAACATACTGTGTATTTTGAAATAACCTCTTTTTTTTATTTTTTATAATACTGTTATGGTGAGATGAATCAGTTGCTTTGTATTTGACAGCTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAGGTTTGAATTTTGACTTATGATTGAATCATAATTTACCAGCTTCTTGTTGATTTTGATGGCATTTTTAATGACATTTTAACAAGTGAGTACTTATTTGAGTTAAATTGCTAATGTACTTATTTCTAAGCCAAGTGCACTAGTGGTTTGACTTCGCGTATTGAGAGTTTTGCTAAGCATAGCCAGTCTCGAGAGGGTGTGGTAGGTTGATGGATAATGCAAAAATAATCAACAGCGAAAAATGATCTAATTATGTAATTGAATTGAGTTGCATTTATACCGTATACGGATGATTCATATGCCCGATCTCAATTGTTATAGTTGATTGATTGAGTGTATAAGTGGTGTGGACATGTTACTAGTTTCTATTACATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTAGATTTTGTTCTATGGTGATGCAATTTTTTAGAGTGGCGTGTTACATAGGGAGATGAGAAGCTGTGGAAACAAAAGTAAATATTTAAGCAAAAAAGAGTAGTTAGGATTCACTCTATTTTTTGGTTCTTATATCTTTTTGACCTATGTGTGTGTTGTTTGTGGCTCATATGAAAAATTCCTAATTTTCAGGTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAGGTAGCTAGTAAAACTTGTTGTGACCGATATATCTTGTATGTCGAGCTATAAACACTTCAAGAAGTAGGTTGATCTCTGTACATTTAAGGTGGAGTTGTCTTATCTGTTCATTAGCCGATGTTCTAGAAAATGTTTTTGTTATAGTAGCTTGGTTTTTGTCCACATATCGAAGCAACTAATCTTACCTTCAGTACCTGCTGGTGGCTAAAAAATCTGGGTTGGGAAATTTCATATTACGTGTTACCATAGAACTATCCTTATTAGGTACTGATTTAGTTTCTAAAAGGATATGGAAAGAGCGTACATTCATTGCCTATTTTCCATATTTCACGTGCTCTGGAGACATTAAAATTCGGTCTTGAGTTATCACAATGACTCATCTATGCATGCATGTGTTGGAGGGATTTGACATAAATTATTTGTCACAATGCTTTCTGTATTTCTTGTGGGTGCAGGTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTAATAGGTATAATTAGTGATATGCAACAATTTCTATTTGTACTCTTCTCAAAACTTGTGTTGATTTATTTTAAGCAAAATTTTACATTTTATAAGACTGATAAACATGATAACAAGCTAGATATTTCATGTTTGATTCTTCCTTTATCTTTTGATCATACCGTCTTATGGCATGAACATGCTATTTTTTTTAAACAGACAAAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCT</genome_strand>
        <mrna_strand>TATACCGTTGCGTTTC-ACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTGTCCTTCGGCATAT...................................................................................CAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTA..............................................................................................CTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTAATAG...............................................................................................................................................................................................ACAAAAGGCTGCAAATGCTCTCATGGATACACTGACCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321251" ref_strand="+" ref_description="SGN-E321251 [cTOB-23-I3]">
      <seq>aataccgttgcgtttcaaccaccatgaccccgctgagtatcacccttatcccttcctccaccgtgcctccgacgcccctgaaacctccgccatcggtgaaacaaccgccgcctacgccgccgatcgaagcaaagtttttcagccgtagaaacgccgtcgtttggctctcactcattgctcctctaactcatcctgcctccgctttgtccttcggcatatcaggaccaaaagaatggctgagagatcagaagaagaagactgcgaagtaccttttggctccaatcgaggcttctagaaacatcctccgatatgctaatctcttacttactagaactgaaccagagtttggtgaaaaggaacttgaagaagttcagagcttattgaggtctgctgcaagggattgtgtgcctcaagagaggaattccttcgttcagtttcaatcaaaatcaggagttgaggtttgcacattccagctggttgtgaaaaatgcttcttctttgcttcctgacaaggacccggtnaagttagcagctgaagccaaacttatcgatctcataaggtcttttgcttctctcagtgacatggcaaaatgatttgatgtgcaagttgcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="14914" stop="12452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14614" g_stop="14396" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14395" i_stop="14313" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14312" g_stop="14205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="327" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14204" i_stop="14111" i_length="94">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14110" g_stop="13980" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="458" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13979" i_stop="13364" i_length="616">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13363" g_stop="13263" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="559" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13262" i_stop="12808" i_length="455">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12807" g_stop="12752" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="615" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E321251" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14614" e_stop="14396"/>
          <exon e_start="14312" e_stop="14205"/>
          <exon e_start="14110" e_stop="13980"/>
          <exon e_start="13363" e_stop="13263"/>
          <exon e_start="12807" e_stop="12752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTTTCCTTCGGCATATGTATTTACTTATCTCGAGTTTTTTTTAAGTTGAAATTAAACATAGTCTAACTGAATTGTTTTGGTTTGCGAAAATGTTCTCAGCAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTAGTAATAACATACTGTGTATTTTGAAATAACCTCTTTTTTTTATTTTTTATAATACTGTTATGGTGAGATGAATCAGTTGCTTTGTATTTGACAGCTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAGGTTTGAATTTTGACTTATGATTGAATCATAATTTACCAGCTTCTTGTTGATTTTGATGGCATTTTTAATGACATTTTAACAAGTGAGTACTTATTTGAGTTAAATTGCTAATGTACTTATTTCTAAGCCAAGTGCACTAGTGGTTTGACTTCGCGTATTGAGAGTTTTGCTAAGCATAGCCAGTCTCGAGAGGGTGTGGTAGGTTGATGGATAATGCAAAAATAATCAACAGCGAAAAATGATCTAATTATGTAATTGAATTGAGTTGCATTTATACCGTATACGGATGATTCATATGCCCGATCTCAATTGTTATAGTTGATTGATTGAGTGTATAAGTGGTGTGGACATGTTACTAGTTTCTATTACATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTAGATTTTGTTCTATGGTGATGCAATTTTTTAGAGTGGCGTGTTACATAGGGAGATGAGAAGCTGTGGAAACAAAAGTAAATATTTAAGCAAAAAAGAGTAGTTAGGATTCACTCTATTTTTTGGTTCTTATATCTTTTTGACCTATGTGTGTGTTGTTTGTGGCTCATATGAAAAATTCCTAATTTTCAGGTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAGGTAGCTAGTAAAACTTGTTGTGACCGATATATCTTGTATGTCGAGCTATAAACACTTCAAGAAGTAGGTTGATCTCTGTACATTTAAGGTGGAGTTGTCTTATCTGTTCATTAGCCGATGTTCTAGAAAATGTTTTTGTTATAGTAGCTTGGTTTTTGTCCACATATCGAAGCAACTAATCTTACCTTCAGTACCTGCTGGTGGCTAAAAAATCTGGGTTGGGAAATTTCATATTACGTGTTACCATAGAACTATCCTTATTAGGTACTGATTTAGTTTCTAAAAGGATATGGAAAGAGCGTACATTCATTGCCTATTTTCCATATTTCACGTGCTCTGGAGACATTAAAATTCGGTCTTGAGTTATCACAATGACTCATCTATGCATGCATGTGTTGGAGGGATTTGACATAAATTATTTGTCACAATGCTTTCTGTATTTCTTGTGGGTGCAGGTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTA</genome_strand>
        <mrna_strand>AATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTGTCCTTCGGCATAT...................................................................................CAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTA..............................................................................................CTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTNAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTTGCTTCTCTCAGTGACATGGCAAAATGATTTGATGTGCAAGTTGCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366122" ref_strand="+" ref_description="SGN-E366122 [cLPT-15-H5]">
      <seq>tgagtatcacccttatcccttcctccaccgtgcctccgacgcccctgaaacctccgccgtcggtgaaacaaccgccgcctacgccgccgatcgaagcaaagtttttcagccgtagaaacgccgtcgtttggctctcactcattgctcctctaactcatcctgcctccgctttttccttcggcatatcaggaccaaaagaatggctgagagatcagaagaagaagactgcgaagtaccttttggctccaatcgaggcttctagaaacatcctccgatatgctaatctcttacttactagaactgaaccggagtttggtgaaaaggaacttgaagaagttcagagcttattgagatctgctgcaagggattgtgtgcctgaagagaggaattccttcgttcagtttcaatcaaaatcaggagttgaggtttgcacgttccagctggttgtgaaaaatgcttcttctttgcttcctgacaaggacccggtaaagttagcagctgaagccaaacttatcgatctcataaggtcttttgcttctctcagtgacatggcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="14881" stop="12476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14581" g_stop="14396" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14395" i_stop="14313" i_length="83">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14312" g_stop="14205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="294" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14204" i_stop="14111" i_length="94">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14110" g_stop="13980" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="425" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13979" i_stop="13364" i_length="616">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13363" g_stop="13263" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="526" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13262" i_stop="12808" i_length="455">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12807" g_stop="12776" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="558" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E366122" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14581" e_stop="14396"/>
          <exon e_start="14312" e_stop="14205"/>
          <exon e_start="14110" e_stop="13980"/>
          <exon e_start="13363" e_stop="13263"/>
          <exon e_start="12807" e_stop="12776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTTTCCTTCGGCATATGTATTTACTTATCTCGAGTTTTTTTTAAGTTGAAATTAAACATAGTCTAACTGAATTGTTTTGGTTTGCGAAAATGTTCTCAGCAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTAGTAATAACATACTGTGTATTTTGAAATAACCTCTTTTTTTTATTTTTTATAATACTGTTATGGTGAGATGAATCAGTTGCTTTGTATTTGACAGCTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAGGTTTGAATTTTGACTTATGATTGAATCATAATTTACCAGCTTCTTGTTGATTTTGATGGCATTTTTAATGACATTTTAACAAGTGAGTACTTATTTGAGTTAAATTGCTAATGTACTTATTTCTAAGCCAAGTGCACTAGTGGTTTGACTTCGCGTATTGAGAGTTTTGCTAAGCATAGCCAGTCTCGAGAGGGTGTGGTAGGTTGATGGATAATGCAAAAATAATCAACAGCGAAAAATGATCTAATTATGTAATTGAATTGAGTTGCATTTATACCGTATACGGATGATTCATATGCCCGATCTCAATTGTTATAGTTGATTGATTGAGTGTATAAGTGGTGTGGACATGTTACTAGTTTCTATTACATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTAGATTTTGTTCTATGGTGATGCAATTTTTTAGAGTGGCGTGTTACATAGGGAGATGAGAAGCTGTGGAAACAAAAGTAAATATTTAAGCAAAAAAGAGTAGTTAGGATTCACTCTATTTTTTGGTTCTTATATCTTTTTGACCTATGTGTGTGTTGTTTGTGGCTCATATGAAAAATTCCTAATTTTCAGGTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAGGTAGCTAGTAAAACTTGTTGTGACCGATATATCTTGTATGTCGAGCTATAAACACTTCAAGAAGTAGGTTGATCTCTGTACATTTAAGGTGGAGTTGTCTTATCTGTTCATTAGCCGATGTTCTAGAAAATGTTTTTGTTATAGTAGCTTGGTTTTTGTCCACATATCGAAGCAACTAATCTTACCTTCAGTACCTGCTGGTGGCTAAAAAATCTGGGTTGGGAAATTTCATATTACGTGTTACCATAGAACTATCCTTATTAGGTACTGATTTAGTTTCTAAAAGGATATGGAAAGAGCGTACATTCATTGCCTATTTTCCATATTTCACGTGCTCTGGAGACATTAAAATTCGGTCTTGAGTTATCACAATGACTCATCTATGCATGCATGTGTTGGAGGGATTTGACATAAATTATTTGTCACAATGCTTTCTGTATTTCTTGTGGGTGCAGGTCTTTTGCTTCTCTCAGTGACATGGCAAATG</genome_strand>
        <mrna_strand>TGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCGTCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTTTCCTTCGGCATAT...................................................................................CAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTA..............................................................................................CTAGAACTGAACCGGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGATCTGCTGCAAGGGATTGTGTGCCTGAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACGTTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTTGCTTCTCTCAGTGACATGGCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316089" ref_strand="+" ref_description="SGN-E316089 [cTOA-23-H23]">
      <seq>ttcagttattgagaattcagcgtgatcacattgaagatgaaatacaccatcttaagtggtctctcaagtctgaagaaactgatgatgccagcaaggagatgttttcggagcttcacaagctgcagtccaaaggtgaggaggtcaggctcagtcatcagcaggcacaacgagaatgtcaccaaaagttccacaaggtctggggacaactaatgaagactggttatcagaattctcgttttgcacatcaggtggaaagatttgcttgcctttataccagtcaagtcacaaacttgagcctgtattccccggataagtactataggcctagtgaggattttatgcctcatgaatttggtatcctctctatttgaggggatcttgtaatccaggggccaaaggcagtgcattttgaagaagagctttgctcattctaatttacattccgagttaccaacatggaaaatctttatgttttgtggtataataacttaaattgtatcatatttgtttgtgctgtctcatatatgcacttatctgattgtgaatttgaattatataaaacaactagaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="35281" stop="37555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35581" g_stop="35647" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35648" i_stop="36188" i_length="541">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36189" g_stop="36246" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="125" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36247" i_stop="36444" i_length="198">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36445" g_stop="36504" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="185" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36505" i_stop="36796" i_length="292">
            <donor d_prob="0.746" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36797" g_stop="36859" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="248" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36860" i_stop="36929" i_length="70">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36930" g_stop="37255" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="574" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E316089" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35581" e_stop="35647"/>
          <exon e_start="36189" e_stop="36246"/>
          <exon e_start="36445" e_stop="36504"/>
          <exon e_start="36797" e_stop="36859"/>
          <exon e_start="36930" e_stop="37255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAAGTAATTATTATCTCCATTTCATTTTTTATTGTAGAACTCATATGTGCATGAGTTATATTTCGGTGTGCATTTTATCTGTGCAACTGTTTCATGTTGAGTCCCTTCAGCAAAGGAAGTACTAGGATAAAAGAATTAAGGAAAATAAAGAAACAAAATCAAGTTTGCTGGAGAATTCATACAGCCGACTTCAGCTTATTTAAAATTGAGGTTTAGTTGATTCAGTGATTGGTTGAAGGTGGGTAGGAGGATGAGAAAGAATTAGAGCCTTTATTTATGAGTATAGACTTTCAGCCTTTTTGGGACTTTATATATGTCAGTGTGGAGTAGTCTTGTCAGCGAGCAGTTACAAATTTCCTTCAAGTGGAGAAATTATTGAACATTTTATTGTGCATCTTAAACAAAGATATTCGTTGTTCGTCGAACCATTGAGACAGTGAATACTCATACATTATGTTAATATAATTTTTCCATCATCTGAATTTGGCTGAAGGTAAAACTTTTGTCGTTGTCGATCATTTCATGAGCTGTCATTATGCTTCAGGTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAGGTTGGTTATTTCAAGATAGTATCAGTAGGAAGATAGTTTTCAATGTTACAAGAGAAAACAATTTTATATTTGGTCATTCTCTACATTGATACTTGTTACCTGTAGAATCAAATGTACTTGATCGCATTGAAGTGAATAGGTAATGACTTCTGTTATGAGGTTCAACTAATCTGGTGTTTTGATGGTGTCATTTTATAGTCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAGGTACGAGTGTTAAAGAGAGAATTTCCTCTAAATGTGGGATTATTTCTTTAGAGAACAGTTCATCCTTTTTCGGGAACAAGCTTTAGTGAAAGCTATTTAAAAATAACATGCATGTATAATACACAATTATACTTCCTTTAAACTTTGTAAAGTCAATGGATATATCCGTAACTTTATTCCCTTGGTTATATTTGACACTAACATGGTGTACAGTATTAACAAATCGATTTGGATTTTCAACAAGAGAAGTAGTGTACTTTTTTCTTTCTGATGAACTCATTAAACGTTTCAGTTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAGGTACGATTGAATAATTGCAAAGTATATATCCTGCTCTTTGTGAGTGTGATCTTTACTTGTCGATTCACAGGTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</genome_strand>
        <mrna_strand>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAG......................................................................................................................................................................................................TCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAG....................................................................................................................................................................................................................................................................................................TTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAG......................................................................GTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723246" ref_strand="+" ref_description="SGN-E723246 [FC19DF12]">
      <seq>gggcgattggcggccaatcggccgaattggtaagttgtaaaaaccgggtcagggcaattgacccatttcaaatagtaacatttccttgtgtaaaattctctccaatcggactgcggcgttaatccgttcactctccggcgaaaaatggaagccaatgctcctcagtttaagctaattttgggttcatcctctactgctcggaaaaagattttaggcgacatgggatacgagttcacaaccatgtctgcagatattgatgagaaagctatccggaaagaaaagcctgaagatttagttatggctcttgctgaggcaaaggcagaagccatcataccaagggtttcaattggagaatccgaaggggatgccgagccaacacttctaattacgtgtgatcaagtggtggtctatgaaggtgtgatcagggaaaaaccatccagtgaagcagaagcacgtcagttcatgaaagattacgccaatggacatgcagcaaccgtgagttctgttcttgtcacgaacctgacaacaggaagtagaagaggagagtgggacaaagtcgagatttatttccacgacataccagatcaagtcatagataaactgattgaggaagggatagttctttatgcagctggtggcttgataattgaacatcctctcgttttgccttatattaaggaagtggttggctcgactgatagcgtgatgggtctcccaaaagctctcaccgaaagacttataaaggaggttctttagtatgactatgatcctgctgctacctgaatgagttcgcgatctataattttgatatacgctattggagctgaaattatcattgattgttggcactggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="47715" stop="42522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47408" g_stop="47271" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="171" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47270" i_stop="47162" i_length="109">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47161" g_stop="47090" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="243" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47089" i_stop="46346" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46345" g_stop="46271" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="318" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46270" i_stop="45072" i_length="1199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45071" g_stop="44991" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="399" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44990" i_stop="44325" i_length="666">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44324" g_stop="44255" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="469" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44254" i_stop="44180" i_length="75">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44179" g_stop="44088" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="561" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44087" i_stop="43386" i_length="702">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43385" g_stop="43344" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="603" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43343" i_stop="43253" i_length="91">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43252" g_stop="43172" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="684" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43171" i_stop="42994" i_length="178">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="42993" g_stop="42822" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="856" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E723246" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47408" e_stop="47271"/>
          <exon e_start="47161" e_stop="47090"/>
          <exon e_start="46345" e_stop="46271"/>
          <exon e_start="45071" e_stop="44991"/>
          <exon e_start="44324" e_stop="44255"/>
          <exon e_start="44179" e_stop="44088"/>
          <exon e_start="43385" e_stop="43344"/>
          <exon e_start="43252" e_stop="43172"/>
          <exon e_start="42993" e_stop="42822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAAAAAACGGGTCGGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAGGTAATTCTTTCAGATTATGAAAGATATTCTTATTGTACTCATAGTGAATCGAATTTACTAATTTCTCAGTTCAATTATTGAAATCCTTTAACTCGTTTTTGTTTTTAAGCTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATGGTAAATATCTAATTACTTATCAATTAGTTGTTGTTCTGTATGCATATATGATTGAATAAGTTCCTGCTCAAAGTCATTCTAATTGATATATGGTTAATAAGTAATAGATTGATTCAGATACTTATTTGTTTGTAGCAATATCGTTAAGTGATAATGAGTTGGTGTCACTGAGCTTAAATCAAATTATGAAGATCCATAATGTATATATACATTGAATAATAAATGTTTGATTTAGTAGATTAAAAATGTAAGAACATGTAAAGATACTAACAAGTAACACATTAAGGAGCTACTCAAACATCACTAATTAGGACATGAAGTTAATCTGAGTTTCGACATTAGCACCCGAACTCAACAGGTTAGGTTTATTATTATAGAATTAATTTCAAAAGCAAGTGTCAGCTTTTGTATGTAGAAGAATAAGAGATGCAAATTTTACAACATAATTCCATCATCGAACTAAAGCAGCAATTGGTTATTATGATATATTATTTGAATCAATGCCAAAAGCGTGACTACCACTGACCATCACCCCCAAGTCTCAAATAGTCGAGAGCAACACATTCTTGGGCCTTTAGGTGCTTGTTGTTGTTATTATTGCTAGGTGCTATAATTCTATATAAACGACACATATCATGTTTGGTGCTTTCACTGAATGTTAGATAAACAGAGATTCATATAGGATCCCCAACTCGATTGAGTTTTATTGGTGGATTAACAGCTTAGCATGTTCTTGTAATATAGTCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAGGTTTGTTTTCTTAAGAACTAGTGCTAGTCCACACATCTCTGAACATATTTTTGAAGTCATTTACTGCTTTGAAATTGCTGGGGGTTTATTCATTTTTCATTTACTGTCATACATGACACCGTTGTGATTTTTTCTTGTTTGTGGCATTCGTTTTTGATTTATGAATCACTCTATGCAATTTGTGATGCTTTTCTTTTAGAGTGTCTTGTAGTGATTTCAACCGTAATCTTAATTTTGGTGTTGATGTTATTTGTAAAATTGCTCTATTACCTATCTTGTTGTGATAGTGTATCTGATTTTTTGGCAAATCATTTAGCTAGCGTGTAGACGTAGATTTGGTTGAAACTTGAATTAAAAAGTTTTTGAACTTGTGTTGAAAAATAAATTTTGGAATGTTAAAGTTGAGTTAGCTTGCATTTTTCTTGAAAAGAGTTGAAGTTTGTGAGTGGAAGAAACTGTTTAGCCAAAAATCTGTCCCCGAATTTGATTTTTTCTTCAAAAACTGATCAAATACCATCAACAAACAAGGGGAAAAAGGGCATCCCAATGCTCAAAGCATCCTACATTCACGCAGGGTCCAGTGATGTTTTCGATTTTTCTTTTAAAATCTATGTCCAAACGGGAGCTTAGATTCTATTCCTCGTCTAGTTGAGTTCTTCACACTGCTTCATAGTATAATTGAAGCCTTGTTTTGAAATGCTTATCTTAATTCCATGAAATTGCATTCTGTGTCAGGCCGATGCTATCATATCAAAATTTCGAAAAACTGAAAACCCTGAGAAGGTTCTCAATCCAACAATTCTGGTTGCAGCTGACACAGTATGTCTTGCCTCTTTTGCCTTTTCAATCTCCCCGCCAAAAGTTATTTTTCTGTCTTCTATTTGATGAAATGAGACCTATAATATGTTATTTCTGCCCGCGATTTTGAATGATAATAAAATTGTCTGCCTTTTATTGTATTGTTTTTCTTGCTTTTATGCTTTGTACCGGTCCTTTTCTGTGTTTGCTTTTTTTCTTTCAAAATGATTCAATTTCTTGTTGGGATATTGGAGGATAATTGTGATGTCCACAAGCTTGCATAATTTTACAGTTTTTCTTTTTTCACATGATAAATTCTTTGCATTTATTGGACTTTGCTATATAGTTTCAAAGCATACATCATAATTGGCATTAACCTGAATAGCTGGAACTATAATCAGGCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAAGTATACATAATTTCTGTTCTTCTCATCGTTTACGGTTAAATATCCGTTATTGACTTACTATAATGTTTTTTACCATTACATCATCTTTGTTTTCATTTCGTTTTTCCCCCAGCTAAAAATTACTATGTTACTTGAGGTGTTTGGTTCAAATATAATACCTGTCTCATCTTCTTTTGAGCGTAAAGTGGTGCCTTTTCAAATAGCTAATCTAAATTATACAATCCTTCATTCCTTCTGCATGAATTGATAACAATATTTCACAGAGATAATACTATCTTCCTTCAAAGTCCATTGTCAAGATTTGACTAGTGTAGAGCACTCAACGGTGTGACGTAGTGGTCAATGAAGTGGGGAGAACTATGAGGTATCATGTCAAATCCCAACCCCAACTCCAATGTAGGAAAAAATACTAGGTGATTTCTTCGTATCTTCCTAACCCTTAGTGGGTAGATTTATCCATTACCTGTGCGGGTGGGAGATGGAAAGTATAGTGGAATTGTCGAGGCGCACACAAGCTGGCCAAGCACCACTATCATTAGAAAAAAAAGGAAGAAGATCTGATTGGTGTTTAGACATGTACTCCCAGTATTCTCTGTTTTCTGCCATTTATTAATGTGTGCGCTTTTCTATGTTAATGATCTTATCCTAACTTGAAATGGTCTGGAGGTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAGGTTTACCATTGCTTTAATCAATTTCTTACTATATTAGTTTTATAATTCTGCTAGTCTTACGCTGTCAACTTCCAGATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGCAGAAGAGGAGAGTGGGACAAAGTCGAGGTACCTCTGTTGATTTCTCTCATTTTCAATTATCAAATGGGTCTCTATGGCTTTTTAGTTTTAGTTTTTTTCAATGGGTTTGTGTCTACTTCCTATCTCAAATTGTTGCAATGCATACCTCTTATTCTAAATCTTGATAAATAATAGTTTTAAAAAGTTCGGCAGTGATGAATGACTTCTACGCGTTGGGTAGGCTTATTGGATACTTCACAAGGTTCCAATTCCCTATAGCCATTCAATAGAAAAGTTATGCAGGGATGATTTGGTGGAGAGTAGAAGTTGGGTGGAATTGGAATTACGTATTTGGATTTGTGGACTGAAGAAAAAATCGACAACTCCTGAAATGATGTTGAAATATTGATGACACTCTACAAATTTCTCTTTCCCACATATTCAATACCACATTCTTAGGTTCTCAAGATTATTACATCTAAAAGCACCTATTGTCTAATGATCCTGGGAAATGTTGTCCTACGCTCGACTTAGCTTAATCAAGTGTTTTAAGCATGATACCGGAAAGCACAAACGAGTGGTAGATGGACCTATTGAGTTTCTTCTTCAACAATTCATTCAGATGTCCACAATATTTGCCTAGTCAAATGTGTACACGAACTGCTTGAGCCTTGAGATGTTCAGCATAATCGCTTTTGTTTTTATTTTTCACTCATCTAGGAAGAGTAATAACATTTCTTTTGATTGCAGATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTGGTATAACTTTCATCTGAATTGTTAGTTATTGATCATATCAAATGATGGATGCTGTACTTGTTGTCTTACGTTCTTTATTTTTCTTGATCAGATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTGGTAAGTGTTACACCACCACCTCTCTCTCTAATGTCACCCAACGTAAATCATAGTCGTGATGGTGTTACACATTTGTTTGTTTGACCCTTTGCCTTTATAGAGACCTAAACTTTTAGTACTTGTTAAAGTTCATCTGATATCGAAAATTCTGCATAATATTAATACCACATTTGGGCAGGTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTCCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTCGCACTGGATGT</genome_strand>
        <mrna_strand>TTGTAAAAACCGGGTCAGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCG-AAAAATGGAAGCCAATGCTCCTCAGTTTAAG.............................................................................................................CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAG...........................................................................ATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGTAGAAGAGGAGAGTGGGACAAAGTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTG...........................................................................................ATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTG..................................................................................................................................................................................GTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTGCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTGGCACTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286042" ref_strand="+" ref_description="SGN-E286042 [cLES-13-G13]">
      <seq>tctctccaatcggactgcggcgttaatccgttcactctccggcgaaaaaatggaagccaatgctcctcagtttaagctaattttgggttcatcctctactgctcggaaaaagattttaggcgacatgggatacgagttcacaaccatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="47646" stop="46790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47346" g_stop="47271" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47270" i_stop="47162" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47161" g_stop="47090" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="148" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E286042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>148</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47346" e_stop="47271"/>
          <exon e_start="47161" e_stop="47090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAGGTAATTCTTTCAGATTATGAAAGATATTCTTATTGTACTCATAGTGAATCGAATTTACTAATTTCTCAGTTCAATTATTGAAATCCTTTAACTCGTTTTTGTTTTTAAGCTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG</genome_strand>
        <mrna_strand>TCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAG.............................................................................................................CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547448" ref_strand="+" ref_description="SGN-E547448 [TUS-71-F9]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtgggcgcatatgactttgggctattttattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="47381" stop="48635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47681" g_stop="48330" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E547448" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47681" e_stop="48330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCAACCTCCATACCCATACACCATTGGTTATATTCTTCCCCCATCATTTTAATGATTTCAAAATTCTTAGTATCAATGGTTATCTTCTTCCCCCACCATTCTAATGATTTCAAAATTCTTAGCATTTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTATCTAAAAAACGAGATGAAGTAAAAAATTATAATTAATAAAAAAGCTGATGAAAAAAAAAATTTGTCGAGTTAAAGAT--AACTGTACAGGGAAGGGGGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAGGTTTTTCTCTCTCTTTTTTTCTTTTTTTTTTTACTTTAAAATAATTTTTATTT-TTTTACTTAATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCGATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTG</genome_strand>
        <mrna_strand>CCCACCCCAACCCCTATCCCCATACACCAGTGGTTATCTTCTT-CCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCA-TTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATG-AAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTACAGGG-AGGGGGGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAAGGCAGGG-A---GGTGTTTAGG-TTTT-ACT-T-TTTTTTT-AAATTTTTTTTACTTTAAAATAATTTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGGCGCATATGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329222" ref_strand="+" ref_description="SGN-E329222 [cTOD-2-M5]">
      <seq>aaaaagtcagcttcagtggtagtatagtagagagaagaagaagagtgagagaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggtacgcaagtcaacaccgcgaacggcggtggtggtgagccagtcggagttcagatccagcagagtaggaggttgccggatttccttcagagtgtaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtttgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggctacatttgcagtataatctagtctctgttattatttgttccgccgttttggtttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttgatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="53259" stop="54416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53559" g_stop="54116" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E329222" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53559" e_stop="54116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTCAGCTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGT</genome_strand>
        <mrna_strand>AAAAAGTCAGCTTCAGTGGTAGTATAGT--AGAG-AGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGTACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697949" ref_strand="+" ref_description="SGN-E697949 [FA04DB10]">
      <seq>gaggcatcttcagtggtagtatagtagagagaagaagaagaagagtgagagaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggcacgcaagtcaacaccgcggacggcggtggtggtgagccagtcggagttcagatccagcagagtaggaggttgccggatttccttcagagtgtaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtttgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggttacatttgcagtataatctagtttctgttattatttgttccgccgttttggtttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttgatgagtcgtcgcttgagtttcagaggaagattctggagcgttctggcctcggggacgaaacttatgttcctgaggctatgcatcagcttcctccgcagcccttctatgcaggctgcgagggaagaagctgagcaagttatgtttggtgccttggataaattgtttgctaatacctctgtgaaaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="53263" stop="54596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53562" g_stop="54296" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E697949" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53562" e_stop="54296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAGCTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAG-CCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTA</genome_strand>
        <mrna_strand>GAGGCATCTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGGACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGTTACATTTGCAGTATAATCTAGTTTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697682" ref_strand="+" ref_description="SGN-E697682 [FA03DB12]">
      <seq>ggctgcaggaattcggcacgacgcttcagtggtagtatagtagagagaagaagaagaagagtgagagaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggcacgcaagtcaacaccgcggacggcggtggtggtgagccagtcggagttcagatccagcagagtaggaggttgccggatttccttcagagtgtaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtttgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggttacatttgcagtataatctactttctgttattatttgttccgccgttttggcttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="53262" stop="54411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53569" g_stop="54111" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="566" r_length="543" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E697682" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53569" e_stop="54111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGA</genome_strand>
        <mrna_strand>CTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGGACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGTTACATTTGCAGTATAATCTACTTTCTGTTATTATTTGTTCCGCCGTTTTGGCTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698633" ref_strand="+" ref_description="SGN-E698633 [FA07AD11]">
      <seq>gaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggcacgcaagtcaacaccgcggacggcggcggtggtgagccagtcggagtccagatccagcagagtaggaggttgccggatttccttcagagtgcaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtctgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggctacatttgcagtataatctagtttctgttattatttgttccgccgttttggtttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctccctgagcatctcaaggctccctatgaacggttcatgcagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="53312" stop="54389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53612" g_stop="54089" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E698633" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53612" e_stop="54089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCT-CCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATT</genome_strand>
        <mrna_strand>GAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGGACGGCGGCGGTGGTGAGCCAGTCGGAGTCCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGCAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTCTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTTTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697483" ref_strand="+" ref_description="SGN-E697483 [FA03AD12]">
      <seq>cggtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttgatgagtcgtcgcttgagtttcagaggaagattctggagcgttctggcctcggggacgaaacttatgttcctgaggctatgcatcagcttcctccgcagccttctatgcaggctgcgagggaagaagctgagcaagttatgtttggtgccttggataaattgtttgctaatacctctgtgaaacctaagaaaataggtgtgcttgttgtgaattgtagtttgttcaatccgactccatcgctttcagctatgattgtgaacaagtataagttgagaggtaatataaggagttttaatctgggaggtatgggttgtagtgctggtgtaattgccgttgatcttgctaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattacgcacaactggtattttgggaataagaagtccatgttgatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="53685" stop="54859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53769" g_stop="53771" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53772" i_stop="53987" i_length="216">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53988" g_stop="54559" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="575" r_length="572" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E697483" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53769" e_stop="53771"/>
          <exon e_start="53988" e_stop="54559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCA</genome_strand>
        <mrna_strand>CGG........................................................................................................................................................................................................................TTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCACAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238102" ref_strand="+" ref_description="SGN-E238102 [cLED-22-I2]">
      <seq>aaaataggtgtgcttgttgtgaattgtagtttgttcaatccgactccatcgctttcagctatgattgtgaacaagtataagttgagaggtaatataaggagttttaatctgggaggtatgggttgtagtgctggtgtaattgccgttgatcttgctaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattacgcagaactggtattttgggaataagaagtccatgttgataccaaattgtttgtttagagtcggaggttctgctgttctgctgtctaacaagtccgtggatagaagaagggcgaaatataagcttgttcatgttgttaggacacatcgaggggctgatgataaggcatttcgctgtgtttaccaagaacaggatgatgctgggaaaactggggtttctttgtcaaaagatctcatggcaatcgctggtggagcgcttaagacgaatatcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="53999" stop="55088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54299" g_stop="54788" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E238102" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54299" e_stop="54788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTA</genome_strand>
        <mrna_strand>AAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGAGGGGCTGATGATAAGGCATTTCGCTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321575" ref_strand="+" ref_description="SGN-E321575 [cTOB-25-O1]">
      <seq>gttgatcttgctaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattacgcagaactggtattttgggaataagaagtccatgttgataccaaattgtttgtttagagtcggaggttctgctgttctgctgtctaacaagtccgtggatagaagaagggcgaaatataagcttgttcatgttgttaggacacatcgtggggctgatgataaggcatttcgttgtgtttaccaagaacaggatgatgctgggaaaactggggtttctttgtcaaaagatctcatggcaatcgctggtggagcgcttaagacgaatatcactacattgggtcctcttgttctacccatcagtgagcagcttctgttctttggttctctgataattaagaaaatattcaataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="54143" stop="55168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54443" g_stop="54868" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E321575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54443" e_stop="54868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAG</genome_strand>
        <mrna_strand>GTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210991" ref_strand="+" ref_description="SGN-E210991 [cLEC-69-J12]">
      <seq>acaagtccgtggatagaagaagggcgaaatataagcttgttcatgttgttaggacacatcgtggggctgatgataaggcatttcgttgtgtttaccaagaacaggatgatgctgggaaaactggggtttctttgtcaaaagatctcatggcaatcgctggtggagcgcttaagacgaatatcactacattgggtcctcttgttctacccatcagtgagcagcttctgttctttggttctctgataattaagaaaatattcaataagcatatcaagccttacattccagatttcaagttggcctttgatcatttctgcatacacgctggtggaagggctgttattgacgagctggaaaagaatttacagctgacacaggttcacgttgaggcatctcgaatgaccctgcaccgctttggaaatacttcatccagctctatctggtatgaattggcgtatatagaggccaaaggaagaatgaagaaaggtaacaaagtttggcagattgcatttggaagtggctttaaatgtaatagtgctgtttggcaggcactacgaaatgtaaagccttctcccgatggtccctgngaggattgtatcgacaggtatcctgtaaaagtagtgtcataacactgtggagatcatgattangcaagttaacggctatctgtagctgcttccgtgtacgtcatggcacctcttctcttgaagccgagtgatgctctacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="54303" stop="55631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54603" g_stop="55331" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E210991" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54603" e_stop="55331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTC</genome_strand>
        <mrna_strand>ACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGNGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTANGCAAGTTAACGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713192" ref_strand="+" ref_description="SGN-E713192 [FB06DH07]">
      <seq>ttcatgttgaggcatctcgaatgaccctgcaccgctttggaaatacttcatccagctctatctggtatgaattggcgtatatagaggccaaaggaagaatgaagaaaggtaacaaagtttggcagattgcatttggaagtggctttaaatgtaatagtgctgtttggcaggcactacgaaatgtaaagccttctcccgatggtccctgggaggattgtatcgacaggtatcctgtaaaagtagtgtcataacactgtggagatcatgattaggcaagttaagggctatctgtagctgcttccgtgtacgtcatggcgcctcttctcttgaagccgagtgatgctctacttctgttcacgagtcaagtatcattttgtccttttcttagtttagagccgcatgctaatttgtgttgtaccatttcaatctattacttgtatgacttcatatatgtagcaattcctattttattgtagttattttcctgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="54681" stop="55774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54981" g_stop="55473" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="506"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E713192" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54981" e_stop="55473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAAC</genome_strand>
        <mrna_strand>TTCATGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCGCCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCGCATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284940" ref_strand="+" ref_description="SGN-E284940 [cLER-19-L18]">
      <seq>atatagaggccaaaggaagaatgaagaaaggtaacaaagtttggcagattgcatttggaagtggctttaaatgtaatagtgctgtttggcaggcactacgaaatgtaaagccttctcccgatggtccctgggaggattgtatcgacaggtatcctgtaaaagtagtgtcataacactgtggagatcatgattaggcaagttaagggctatctgtagctgcttccgtgtacgtcatggcacctcttctcttgaagccgagtgatgctctacttctgttcacgagtcaagtatcattttgtccttttcttagtttagagccttatgctaatttgtgttgtaccatttcaatctattacttgtatgacttcatatatgtagcaattcctattttattgtagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="54759" stop="55759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55059" g_stop="55458" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="401" polyA_stop="410"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E284940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55059" e_stop="55458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTT</genome_strand>
        <mrna_strand>ATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303639" ref_strand="+" ref_description="SGN-E303639 [cLEY-6-C13]">
      <seq>gagctgctttcgggtacgtcatggcacctcttctcttgaagccgagtgatgctctacttctgttcacgagtcaagtatcattttgtccttttcttagtttagagccttatgctaatttgtgttgtaccatttcaatctattacttgtatgacttcatatatgtagcaattcctattttattgtagttattttcctgataaacatctattcatgactgagcttatgagtagtggattcaagttgctaacacgcactgttatttctcactgttagtgaaatgattccattaatggcatgttcatcattttctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="54973" stop="55882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55272" g_stop="55590" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E303639" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55272" e_stop="55590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATGGCATGTTCATCATTTTCTATTTGCTTA</genome_strand>
        <mrna_strand>GAGCTGCTTTCGGGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATGGCATGTTCATCATTTTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227180" ref_strand="+" ref_description="SGN-E227180 [cLEL-30-G23](-)">
      <seq>ggttattctcgtgggtaataacagtgactgcaccgttgcttatggcttggagcagtggaggaaccttcactatttacatggttatgtgtgctttcaccgtggcgttcgtggcaatttgggtaccggagacgaaagggagaactctagaggaaattcagttttctttcagatgaaaacttaccccctcccaaacaggcctttgtgatcctttgttctttttgtcacaaaactcagtttcccttgtgcaaaagtttcaatttttcacatatatagggaagaatgagttgcacatgctgcttcagagtgtgtacatttcatcttgatcttgccatttgctgtaatttactgtatgattttattatttttgtatattctaagtgtgattataccattccattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="58604" stop="57319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58304" g_stop="58245" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58244" i_stop="57966" i_length="279">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57965" g_stop="57610" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="416" r_length="356" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E227180" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58304" e_stop="58245"/>
          <exon e_start="57965" e_stop="57610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAGGTATCTTTCTCTCATACTTACACACCACATGTATAGACATTTTGTTCCCCATAGCATAAGATTCCCGCACTATGTGCATCAGTGGCGTAACCAGAATTTCCACTGAGAGTCAAAATATAAAGAAGTAAAACACGAAAAAGCCAAGGGGCTTCGTCTATTGACACCCCTCAGACAAAAAGATGTACAAACCATAAACATGTTCTGCTGAAAAGTTTCGACATTTCAAACGTGTAGCTTCTAAGACCTGAACTGACTTAACATCTGCACATTTTTCACCAGGAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAAAT</genome_strand>
        <mrna_strand>GGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG.......................................................................................................................................................................................................................................................................................GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAGTTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCCATTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745429" ref_strand="+" ref_description="SGN-E745429 [GI|47105649]">
      <seq>ggctaattccagtattttcaacaacttcatttttcttgatctgtagttcaaatttcaagaactatagagaaaaggggttgactcaaaatttgaagaaaaaaaaatgagtttcagagaagagaacaatgaaggggatctgaaaaagccatttttacatactgggagttggtatcgtatggggtcaagacagtctagtatgatgggttcttctcaagctattcgtgatagttctatttctgttcttgcttgtgttctcatagttgctttgggcccaatccagtttggtttcacttgtggctacacttcaccaacgcaaattgcaattaccaaagatctgaagctcactgtttctgagttctctttgttcggttctttatccaatgtgggtgctatggttggtgcaatatctagtggtcaaatttctgagtacattgggcgaaaagggtctttaatgatagctgctataccaaatatcattggttggcttgccatctcatttgccaaagatccttcttttctatacatgggaagattgttggagggctttggtgtgggaataatctcttatgtggttcctgtatatattgctgagattgcacctcagaatatgagagggggtctagggtctgttaaccagctctctgttacaattgggatcatgttgtcctatttactgggactttttgttaattggaggctgcttgctgttcttggagcattaccttgcctagcactgatacctggactatttttcatccccgaatctcctcggtggttggccaaaatgggtttaacagaagattttgaaacttcgttgcaagttcttcgaggctttgaggctgatattaccaatgaagtaaatgaaattaagaggtctgtagcatcatcaacaaaccgaagaacagcaatgcgttttgcggatctcaaacatagaagatattggtttcctctcatggtaggaattggactacttatcctgcaacagttaggaggaatcaacggtgttatattctattccagcaacattttcctatctgccggtatttcgtcaagtaatgctgcaacttttggtgtcggtgctatacaggttgttgcaactgcagtttctacatggctggtggacagaactggacgtagaattttattaattgtttcctcggctggaatggctgttagtcttcttattgtctccgttgccttctatctaaagggttatgtatctgaggattctaccctctatggtgtcttgggaatagtgtccgtagttggggtggtgttcatgattatttcattctcgctcggaatgggaccaattccatggcttataatgtctgagattcttccaatcaagatcaaaggtctcgctggaagtacggcaacattagccaactggttattctcgtgggtaataacagtgactgcaccgttgcttatggcttggagcagtggaggaaccttcactatttacatggttatgtgtgctttcaccgtggcgttcgtggcaatttgggtaccggagacgaaagggagaactctagaggaaattcagttttctttcagatgaaaacttaccccctcccaaacaggcctttgtgatcctttgttctttttgtcacaaaactcaatttcccttgtgcaaaagtttcaatttttcacatatatagggaagaatgagttgcacatgctgcttcagagtgtgtacatttcatcttgatcttgccatttgctgtaatttactgtatgattttattatttttgtatattctaagtgtgattataccattcaatttaaaataaagtgctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="63718" stop="57303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63419" g_stop="63128" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63127" i_stop="62141" i_length="987">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62140" g_stop="62078" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="355" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62077" i_stop="61999" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61998" g_stop="61909" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="445" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61908" i_stop="61808" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61807" g_stop="61748" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61747" i_stop="61645" i_length="103">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61644" g_stop="61579" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="571" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61578" i_stop="61479" i_length="100">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61478" g_stop="61413" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="637" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61412" i_stop="61321" i_length="92">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61320" g_stop="61245" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="713" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="61244" i_stop="60572" i_length="673">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="60571" g_stop="60507" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="778" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="60506" i_stop="60418" i_length="89">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="60417" g_stop="60326" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="871" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="60325" i_stop="60218" i_length="108">
            <donor d_prob="0.862" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="60217" g_stop="60134" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="872" r_stop="955" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="60133" i_stop="60048" i_length="86">
            <donor d_prob="0.025" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="60047" g_stop="59963" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1040" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="59962" i_stop="59371" i_length="592">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="59370" g_stop="59324" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1087" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="59323" i_stop="59174" i_length="150">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="59173" g_stop="59111" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1088" r_stop="1150" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="59110" i_stop="59030" i_length="81">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="59029" g_stop="58970" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1151" r_stop="1210" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="58969" i_stop="58875" i_length="95">
            <donor d_prob="0.512" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="58874" g_stop="58809" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1211" r_stop="1276" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="58808" i_stop="58715" i_length="94">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.506" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="58714" g_stop="58655" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1277" r_stop="1336" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="58654" i_stop="58360" i_length="295">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="58359" g_stop="58245" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1337" r_stop="1451" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="58244" i_stop="57966" i_length="279">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="57965" g_stop="57612" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1452" r_stop="1805" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1806" polyA_stop="1825"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E745429" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1804</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63419" e_stop="63128"/>
          <exon e_start="62140" e_stop="62078"/>
          <exon e_start="61998" e_stop="61909"/>
          <exon e_start="61807" e_stop="61748"/>
          <exon e_start="61644" e_stop="61579"/>
          <exon e_start="61478" e_stop="61413"/>
          <exon e_start="61320" e_stop="61245"/>
          <exon e_start="60571" e_stop="60507"/>
          <exon e_start="60417" e_stop="60326"/>
          <exon e_start="60217" e_stop="60134"/>
          <exon e_start="60047" e_stop="59963"/>
          <exon e_start="59370" e_stop="59324"/>
          <exon e_start="59173" e_stop="59111"/>
          <exon e_start="59029" e_stop="58970"/>
          <exon e_start="58874" e_stop="58809"/>
          <exon e_start="58714" e_stop="58655"/>
          <exon e_start="58359" e_stop="58245"/>
          <exon e_start="57965" e_stop="57612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACTGTAATTTCTCATTTCTCATTCAACTTCTTTACTTTGCTTTGTTTTTATGTATATGTATGTTTATCTGCACAATATCATGTTAGAATGTTCAAGTTTGATGAGAAAAGAGAGTTTTTTGGGATAAAAATGGAGTCTTTAGCTTGTTTTGTTGTGGTAAAGGATTCATAATTGGGGTTGATGAGGTGATAACCAATTCAATATTGATCACATGTCTGTTTATTTGCACAATATCATGTTAGAATGTTCAAGTTTGATGAGAAAAGATAAAGTTTTTTGAAAAAAAATGAAGTCTTAAGCCTCCTTTGATATGATGAATGATTCATAATTGGGGTTGATGAGGTGGTAAACAATTCAATATTGACCATATGTATGTTTACCTGCCTATTATCCTGTTAGAAGCTTCAAGTTTGATGAGAAAAGATAGTTTTTTGGAATAAAAATGAAGTCTTTAGTCTCTTTTGTTGTTGTAAAGGATTCACAGTTGGGGTAAGAGGTTGCATATATTGTTGGGATTTACAATATGTTATGCCATTCAGATTTTTCTGGTGGATGACGTAACAATTCAATATTGACTACATGTTTGTTTACCTTTCCAATAACCTATGAGAAATTTCAAGAGTTGATTTCTCATATGGTCAATCAATAGAAAGTCATTTGTTTTATTGAAAAAAATTGTGAATCAAGAAGAGAAGGACTTATTGAGATTATAACTATTGTTGAGTGACCATATGAGAATTTACATGAAACTTCATATTTGATTGAAGAGGATAAGTTTGAATAAAAATAGGCTTAAGCTTCTTCATTTTTGTGGTTAAGGGATCAAAAGTGGTATTAAAAAAATGTAGCATCTTTATTCAGATTACAGTTTGTCATGTCATTCTTATTGTGCCTGCAGTTTATTGGCTGCTTACACGATTTATGTTGCTGCAACAAATATTTGCATATATATCTCTATTGATCAGGTGTTTGTTTTTGTTGCATTTGAAGTGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAGGTCTGCAAGAGTCATTCTTGATTTATATCTAATTTAAGTTTGTTTCAGAGCCATTGTTGACTAAAGATAATCTTTTCAGTTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGGGTAAGATTATTGCATTAAAAATGATGTCTAGTTTTTTCATTTACCATATTTCTGTGTATTGCTGAAGTGGATGCTCAAATCCTTTTTTTTTCCTACTGCAGTCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAAGTAAGATATTCTACCTGAAGTATATTATATGGTGCCTCGATAATCTACATTGACATGTATGTGCTTATATCTCCCTTCCTTTGGCCTTACCAATATGTTTCAGGATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTGGTAATGTTCAATTTCTTAAATCTTCTCTGGTTACAGTGATTGACTACACCGAAATTCTCAAAACTAAATGCTTTCGCTTCCTGCTTTTTGGTGTTTTTAGGTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAGGTTCGCGGAGTTATAGACTTATTTTTCGTTAAAACCAAAGTTTGCTATGCCTGCTTAATCAATCACATGCTATCATTTGTTTCTTAATGTAGCTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTGGTAATGATCATTTCTCTTGAAAACTCTTGTTAAGCTACAATTTACAGTTATGAAGTCATAAATCATTTTTTACTCTACTGAATAACATTTAGTGCATAAATAATAAACTAGTCAATTAAGTTGAAGTGATAGCTTTTCATTTTGTGAGGACTGAGAATAGTTATTGAGTTCTTCTTTGGCTGATATCTGCACAGCTTCTCTTTATTCTTGTAGATTTACGTTGTCAAGCGTAAGCGCTTTCCTGCTCCCTGACTTAAGACTTGTGTTTTGTTAGTTGAGCAGTATTTCTGTTTTAAAATGACATTCCTTTTCTTCTTAATGACGGTGTTGGTGGGGGCAGTTTGGGTACCTACTGCCTCCCACCAACACATGTAACGTATAACTTTTCCAACCAAGGCTTAGGAGATGGGACGTAACGACATCGAGTTTCTTTTGCCTCTGTTGGGATTGAACCTGAGACCTCATGGTTCTTCTCCTACTTCATTGACCACTAGTCCACATCACTGTGCTTCCAAAATGACAGTCTTCATTCGCATAATTTTATAAAAAAAATATTTTTCCTTTTGTGCTTTTGGTGGAGAGGGCTATGTGTCTTCTTCTTCTTCTTCTTACACTTACATAAGAGTTTCCGGATTGAATTTTGAAAGAGCTGGTATATTATTTTCTTTTATAGGAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTGGTGAGCTTCATTATATATATATTTCTTTGTGTAATTCTTCAAGGCTTTGATTGCTGTTTGTCTCAGTTGAGTTTCTATCATAAATATAGGCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGA-GCTGATATTACCAATGAAGTAAATGAAATTAAGGTAAATTGTATGAAAGACTATATAAAGCAAGCCTTGTTGCCACACATGAAATTCGGTATAAAACTTGTTGTTAAATTTGTATTTATTTTATGTTATTTTTGCGTATAGAGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATGGTATTTTGACGTTTCATGCTGTTATTGGAGCCTTCGTGTTAGTTATGCCCTTGTTTCGTCAATCTTCTAATTTTTCATTCTTTTAGGTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCGGTACGGATTAAACAAACAGTTGCAACTTGTCATCTTAAATGATGGATGTGTCAGTAGCATTTGCCTTCTTCAAAAGAAGTGTCATTTTCAGCCTGTCATGTAGCATCTACCTTTTTGTTATGATCCATTGCTGGCAAAATTGAATTGCATTATAATTTTGCCTCAAGAGAACCCCTGAAACAAACTAATTGATTAAGATTGATACACGAGTTATTTAAATGGCATAATACATAAACAAACACTCAAATATGGCCCCAACTGGCAAGTACGCACTCCAACTTTGAGAGTATACATCTAGACACCTCACCTGGCATCTAAACACTCCAACTTGTCCTCATTGTCTGGTGGACACCTGACACTAATGTCGCACATAAAGTTAGAAGTGTCTAGATTGTACGTTTGAGTTCAACTGACATGGCGGAGACGAGTTGAGATGTCTAGATGTGGATACTCAAAGTTGGAGTGTTTAGTTGTTAGTTTAGACCAAGTTAAAGTGTCTATCTATGTATTATGTCTATTTAAATCTATAATGATCTATGACTTTCTTCGTGTAATATAAGTCTTCACTAATTTAGTCATCTAAACTTCACAGGTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAGGTCCAGCTTTTGCTATTTTAGTTTCTCTTCTTTAACTTTCAAGTATGCATATTATTTAGGATGGAAGGTGAAAAGGTTTCGATTTCTGTGTAGCACTTGCTTGCATTACTTTTGTGCTGTCAAATTTCATCAATGTCCTTCAATGTGCAGGTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATTGTAAGTTTTAAAAAGTCATGACGTATATGTAGATTGTTCTAATTTTTGTGCTAACTTATTAAAGCAAATGCTCTTTTGTAGGTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAGGTAGTTTAGTGGAACAAGTTGCTTTCGTACGAAAGATTCCGACTTGAACTGCACTTGTCATCTTTCTCATCATTTCTTCTTTTATATTTGATCAGGGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTGGTATGTACCCTTCTCGATGAAGACATCTTCGTCTCTTGAAAATACATGATTAAAGTAACAGATACTCATTTTTCTGACCAACTTCTCATTTCAGTTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAGGTACTTACTTTTTCATTTATCATGCATGCCAAATTTCTGCTTGCTGTTGAGTTCTCTTCGTACCTACTTTTAACAATTTCCGAGCAATTGGAGTTGGTCCAATTATCGGATACTGTTCGACCTTTAATCGGTTCGGTGATTGATTAGTGTCCAAGATCCCTTTCGTGAATATAGACATGCTACATGTTTCATTTATCTGGAACGATACGGGCAACTGATGATTAAGTTTTCGTGCTTGCTTTACGTTTCATGTTAAGATTTTCTTTGAACTTATTACGTGCATTGGATATTGTAGATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAGGTATCTTTCTCTCATACTTACACACCACATGTATAGACATTTTGTTCCCCATAGCATAAGATTCCCGCACTATGTGCATCAGTGGCGTAACCAGAATTTCCACTGAGAGTCAAAATATAAAGAAGTAAAACACGAAAAAGCCAAGGGGCTTCGTCTATTGACACCCCTCAGACAAAAAGATGTACAAACCATAAACATGTTCTGCTGAAAAGTTTCGACATTTCAAACGTGTAGCTTCTAAGACCTGAACTGACTTAACATCTGCACATTTTTCACCAGGAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAA</genome_strand>
        <mrna_strand>GGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAG...............................................................................TTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGG.....................................................................................................TCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAA.......................................................................................................GATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTG....................................................................................................GTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAG............................................................................................CTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTG.........................................................................................GCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGGCTGATATTACCAATGAAGTAAATGAAATTAAG............................................................................................................AGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATG......................................................................................GTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAG......................................................................................................................................................GTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATT.................................................................................GTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAG...............................................................................................GGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTG..............................................................................................TTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAG.......................................................................................................................................................................................................................................................................................................ATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG.......................................................................................................................................................................................................................................................................................GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349426" ref_strand="+" ref_description="SGN-E349426 [cTOS-1-P5]">
      <seq>ttctaatgttagtttacagcagcagatattgtcaatgcagcagcagcaacaacaacaacatcagcagttcttggatcctattaatgggattcttaatgttgggagctaagtgatttaagggtctaaggatgcgaacaaccaagctaaataatttaaggggctaaggatgcaaaccaagcttaagtatgaatctggtggaatttaagagcttgctaattggaaaagagcgggtccaatgaagacacactaagttatgcctttcatattctcaacatgtactgcacacgtttattccatctacgtttatattaaaattttgtgtatacacattcttgaaataaaggttgaaaaatgaaacataaaagtattgaagtgaaaatctttcttatttggttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="71093" stop="73423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71393" g_stop="71494" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71495" i_stop="72828" i_length="1334">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72829" g_stop="73122" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="396" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="406"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E349426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71393" e_stop="71494"/>
          <exon e_start="72829" e_stop="73122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGGGTATGTTTCTCTTTCGTGTCTAGTTTACCATTAATCGTTCAGTAATTGTCATGTATCTTTCCAGAGTTTTTCCATGTATGTTCATTGCATTTTCAATAGTATGTAATGATGGTTATCGGTAGGGGAAAGTTAGTCGATTACTCTCAGGTAAAACATGTCATGCAATAGTTTAGTTACAGAGTGGTTCGGTTAACCTCAATGTAGTAATACTTCGTTAGTGAAAAGCCTGAAAATGAAAAGAAAAGAAAAAAGTAAGGAAAGCAGTTGCTCTTCATCTAAATATCCTGAATATGATTGTCCTATCTTCAAAAACTCTTGAGTTTGTCTTTTTCCAAACTGTCCGCCATTTGCAAGCAGGAACCAATCTCCACGCTTTCTTGTCTAACTCTACCTCCCAAACTGTTCTAGCTCTTAGGAAGATCCACAGTGCTTGCAGGAACCACTCTCGATTATTTGATCCCCACCAAATTAAGAAAGAGCTGTCACAATTGATAAGTAAAAGAACAATGAAGAAACAAATGGCTATTAGTTTCTGTGTTAGACTCAGAGAACAAACATATGGAACATAACTGGAATCCTCTTCTTCTCAACCTTTCTTGAGTCAAAGCTGCCTTTCTAGATACCAACCAGGTGAAAAACAGAACCTTTGGACTTTGGAGGGGCATTATAAAATTATATGGCCAATCAATATTCTGATAAGCTTAATTTGTGATTGCTAAATTGGCAAACATGACTGTGAAAGTCCCATCTTTGCTTGGATTCCAATAGAATTTGTCCGCTGCTTCTGATAGCCCCTAAAGCTCCTCCAAAGTTTTAAAGAACTCTACTGCTCCTTTAATGATATCTGATGGATCTTCACATCCCTACTCCATCAGGACTGTTAACAGGATCTGTGTACCAAATCCCTTCCTGACTATTTGTCAAGAATTACCCTTCTCCATTAACTGTCCTCTTCCTTAGTTTACCTCCATATCCATTTCATCCGTCGACATGTATTTTGAACATTTATGTCCTTAATTACCAGACCCCTTTTTCAATTTCAAAACTTCCTCCAAACTAGTTCAGGGCTGAGCTTTGTCAAACCTTTTCTGGTTTAAGGTGCTAGTTTGTAATATTATATTACCATGTCAACCAAAAAAGAAAAAGAGGTGCTACTTACTCTAATCCCTTTGAGCTAAATAACTTTGCCATGACTTTCAGTGACTCCAATATCATGCCTATAATTATGGAAGTATTAACTATGTTCTTAATTCTAATGAGCAAGTAAGCATTTCTTTTCCCAATGAAGTTGTAATGCAAAAGTAAACACCATTGATTGAATTTCCCATATTCAGGAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</genome_strand>
        <mrna_strand>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392956" ref_strand="+" ref_description="SGN-E392956 [TUS-37-C15]">
      <seq>tttcaggggcaacgtgtgtgttgacatccccgagtacatttgtcaatcgtcctaggatttggcttgaattgatatcagagttcaaggcaacttgcactcctgttccttcatttgctttgcctctcgtgttgaaacgtggtcatactgaggcaacggttacaggaactgttagcaatcctattagtatgttgagcttgatgaatttgatcatcgttaacgagccaatttacaatgattctatcgaagaatttgttgaagtttttaggccttttgggctaaatcctttggcaatttctccttcatatggcttagctgagaatggcacatttgtttcaacatcatggagaagtagtaagtttaacaaattttcgacgtataaaaagctcttgccaagtgctaggcttgatgaagaccaagtagacattgaaattcttgttgtgaatgaagatacaaatgagattgttgaagatggaattgaaggtgaaatatggatttcatctcctagcaatgctattggatatttagcacatccctctctaactcaacaagtgttcaacgccacgcttaanaacaaggcgggaaaatgctatgttcaaacaggggataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="75170" stop="76377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75470" g_stop="76077" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E392956" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75470" e_stop="76077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAAAAACAAGGCGGGAAAATGCTATGTTCGAACAGGGGATAGA</genome_strand>
        <mrna_strand>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAANAACAAGGCGGGAAAATGCTATGTTCAAACAGGGGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242735" ref_strand="+" ref_description="SGN-E242735 [cLED-31-A22]">
      <seq>ttcaggggcaacgtgtgtgttgacatccccgagtacatttgtcaatcgtcctaggatttggcttgaattgatatcagagttcaaggcaacttgcactcctgttccttcatttgctttgcctctcgtgttgaaacgtggtcatactgaggcaacggttacaggaactgttagcaatcctattagtatgttgagcttgatgaatttgatcatcgttaacgagccaatttacaatgattctatcgaagaatttgttgaagtttttaggccttttgggctaaatcctttggcaatttctccttcatatggcttagctgagaatggcacatttgtttcaacatcatggagaagtagtaagtttaacaaattttcgacgtataaaaagctcttgccaagtgctaggcttgatgaagaccaagtagacattgaaattcttgttgtgaatgaagatacaaatgagattgttgaagatggaattgaaggtgaaatatggatttcatctcctagcaatgctattggatatttagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="75171" stop="76298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75471" g_stop="75998" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E242735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75471" e_stop="75998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACA</genome_strand>
        <mrna_strand>TTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242712" ref_strand="+" ref_description="SGN-E242712 [cLED-31-E11]">
      <seq>ttcaggggcaacgtgtgtgttgacatccccgagtacatttgtcaatcgtcctaggatttggcttgaattgatatcagagttcaaggcaacttgcactcctgttccttcatttgctttgcctctcgtgttgaaacgtggtcatactgaggcaacggttacaggaactgttagcaatcctattagtatgttgagcttgatgaatttgatcatcgttaacgagccaatttacaatgattctatcgaagaatttgttgaagtttttaggccttttgggctaaatcctttggcaatttctccttcatatggcttagctgagaatggcacatttgtttcaacatcatggagaagtagtaagtttaacaaattttcgacgtataaaaagctcttgccaagtgctaggcttgatgaagaccaagtagacattgaaattcttgttgtgaatgaagatacaaatgagattgttgaagatggaattgaaagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="75171" stop="76255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75471" g_stop="75955" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E242712" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75471" e_stop="75955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAA</genome_strand>
        <mrna_strand>TTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226155" ref_strand="+" ref_description="SGN-E226155 [cLEL-31-K16](-)">
      <seq>atgctgaagtacaaagattttgctcacaagttggagtcaagagacaggtttttaaggtttggatgcataataataagaacccttcttctgctaaaaaaaatataatacaagaagatcaaccttaattaattttgtttaattaaggttttgagggaaaaaatgaaattaaatttcttgggatttggtttatgcttatgtaatcttactaggaatcgtacgtagctagttttttttgttttttttttgggggggtctatgtagtattattgtaactatatggaaccacttaattagatttttatttttattaattgttgtactttggaacctttattcatctgaaaattttcagctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="79028" stop="78074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78728" g_stop="78375" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="381"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E226155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78728" e_stop="78375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</genome_strand>
        <mrna_strand>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226059" ref_strand="+" ref_description="SGN-E226059 [cLEL-31-K16](-)">
      <seq>aagaagatcaaccttaattaattttgtttaattaaggttttgagggaaaaaatgaaattaaatttcttgggatttggtttatgcttatgtaatcttactaggaatcgtacgtagctagttttttttgttttttttttgggggggtctatgtagtattattgtaactatatggaaccacttaattagatttttatttttattaattgttgtactttggaacctttattcatctgaaaattttcagctaaaaaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="78920" stop="78074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78620" g_stop="78375" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="256" polyA_stop="273"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E226059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78620" e_stop="78375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</genome_strand>
        <mrna_strand>AAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280203" ref_strand="+" ref_description="SGN-E280203 [cLEL-7-F23](-)">
      <seq>caagatctatattttgaaaacctgaaattctcatctctttttcctcattaccaccacctaatgccatgatttttttttttttgttaatttaaaaaaaaaaaaaaagaaaccctaaccctatgtctaatgttatgtgggtgggtgtgaaattgaagtaatgaaaggaggatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="79888" stop="80660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80188" g_stop="80360" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E280203" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80188" e_stop="80360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCTATATTTTGAAAACCTGAAATTCTCATCTCTTTTTCCTCATTACCACCACCTAATGCCATGATTTTTTTTTTTTTGTTAATTTAAAAAAAAAAAAAAAGAAACCCTAACCCTATGTCTAATGTTATGTGGGGGGGTGTGAAATTGAAGAAATGAAAGGAGGATGGG</genome_strand>
        <mrna_strand>CAAGATCTATATTTTGAAAACCTGAAATTCTCATCTCTTTTTCCTCATTACCACCACCTAATGCCATGATTTTTTTTTTTTTGTTAATTTAAAAAAAAAAAAAAAGAAACCCTAACCCTATGTCTAATGTTATGTGGGTGGGTGTGAAATTGAAGTAATGAAAGGAGGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310522" ref_strand="+" ref_description="SGN-E310522 [cLEZ-19-G13]">
      <seq>ttggctaatatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaatcaatgattcacacgatattaactcaattttttaaggggagagttcatcaaggtagcttgctacttgggctctcgtgtgtcgcctatgcgttgcactactgcatgggcctggcacaccccaccaaatctacttcaaatcttttggttgatatattgtgtaatgtaatctaattcaaatctttcggttgatatattgtgtaatgtgttcttattatgtttatacatacttatatttatttatttaattttatataattttaaatgtcgtgtatgggcataagctaagttagatttacagcgaaatataattttggttaaaattgaacactgtttttagatcttgtttgacaatttgaaagttaacaatgagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="91872" stop="92901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92172" g_stop="92601" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E310522" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92172" e_stop="92601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATT</genome_strand>
        <mrna_strand>TTGGCTAATATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545666" ref_strand="+" ref_description="SGN-E545666 [TUS-68-K4](-)">
      <seq>atttatttatttaattttatataattttaaatgtcgtgtatgggcataagctaagttagatttacagcgaaatataattttggttaaaattgaacactgtttttagatcttgtttgacaatttgaaagttaacaatgagtattgttgtggctttgctaatattgtttttcagtagtaatctcctttgatgaattgattgagttgcttcacttctccagtttgttgatccaccactgctttgacaatatccgccacagaaatcatgcctactaccttcccatcgatcactggaacatgtcgtatgtggtgctctgtgatcataaaacgttccatcacatttccatagtgcattaagcatcagtaacttcgcgagttagaactaatacttaccactcatgagctgcattgcttgaagaatgtttgtgtccgatgtgacggttatcagcttgctctgttgcaatggtagtactaatatttgagcacaaaacagaagacagatgaaaaaaagataaagccaggaagaccgatatctatagagtacctgctcggtcataatatctccgactcttgtgtatttagatgatctatcctgtacaattacctttcgcaaataatctgtacgtctcttgtacaatgtgcatagatgaataagttcaacattgtgtgtattactaaagatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="92159" stop="93447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92459" g_stop="93148" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E545666" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92459" e_stop="93148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATTGTTGTGGCTTTGCTAATATTGTTTTTCAGTAGTAATCTCCTTTGATGAATTGATTGAGTTGCTTCACTTCTCCAGTTTGTTGATCCACCACTGCTTTGACAATATCCGCCACAGAAATCATGCCTACTACCTTCCCATCGATCACTGGAACATGTCGTATGTGGTGCTCTGTGATCATAAAACGTTCCATCACATTTCCATAGTGCATTAAGCATCAGTAACTTCGCGAGTTAGAACTAATACTTACCACTCATGAGCTGCATTGCTTGAAGAATGTTTGTGTCCGATGTGACGGTTATCAGCTTGCTCTGTTGCAATGGTAGTACTAATATTTGAGCACAAAACAGAAGACAGATGAAAAAAAGATAAAGCCAGGAAGACCGATATCTATAGAGTACCTGCTCGGTCATAATATCTCCGACTCTTGTGTATTTAGATGATCTATCCTGTACAATTACCTTTCGCAAATAATCTGTACGTCTCTTGTACAATGTGCATAGATGAATAAGTTCAACATTGTGTGTATTACTAAAGATCAATTAGAGAC</genome_strand>
        <mrna_strand>ATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATTGTTGTGGCTTTGCTAATATTGTTTTTCAGTAGTAATCTCCTTTGATGAATTGATTGAGTTGCTTCACTTCTCCAGTTTGTTGATCCACCACTGCTTTGACAATATCCGCCACAGAAATCATGCCTACTACCTTCCCATCGATCACTGGAACATGTCGTATGTGGTGCTCTGTGATCATAAAACGTTCCATCACATTTCCATAGTGCATTAAGCATCAGTAACTTCGCGAGTTAGAACTAATACTTACCACTCATGAGCTGCATTGCTTGAAGAATGTTTGTGTCCGATGTGACGGTTATCAGCTTGCTCTGTTGCAATGGTAGTACTAATATTTGAGCACAAAACAGAAGACAGATGAAAAAAAGATAAAGCCAGGAAGACCGATATCTATAGAGTACCTGCTCGGTCATAATATCTCCGACTCTTGTGTATTTAGATGATCTATCCTGTACAATTACCTTTCGCAAATAATCTGTACGTCTCTTGTACAATGTGCATAGATGAATAAGTTCAACATTGTGTGTATTACTAAAGATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723211" ref_strand="+" ref_description="SGN-E723211 [FC19DB01]">
      <seq>aatcggccgaattgatataacaagttgactgtaattaattaactgtgtgttaagtttaattaagaagttacttagcaataaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagagagagatagatgcctattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaattaatcaagaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtaccagaagattcagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaaaactaaacccggtccagccggaatcaacgcttgaaccatcgtttggctttagaccggttgctaataagtactagtatatatagtacttttttttggttaattttattttttttatgacaaactacttttagtttaatttgcgaaagtatttgtatttgagttgatatttagagtttgtgttaagaggtgtcgatgcttgtaatgttgggacatatatgcatgtcgttgtaatatattttttgtgctttcttcgataaaanaaaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103287" stop="105341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103574" g_stop="103720" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="270" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="371" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105041" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="744" r_length="373" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="746" polyA_stop="782"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E723211" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103574" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCACCAAATTTTCATATAACAAGTTGAGTGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAG----TATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAA</genome_strand>
        <mrna_strand>AATCGGCCGAAT--TGATATAACAAGTTGACTGTAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTACTTAGCAATAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAGAGAGATAGATGCCTATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAATTAATCAAGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACCAGAAGATTCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAAAACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCATCGTTTGGCTTTAGACCGG-TTGCTAATAAGTACTAGTATATATAGTACTTTTTTTTGGTTAATTTT-A-TTTTTTTTATGACAAACTACTTTTAGTTTAATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGTGTTAAGAGGTGTCGATGCTTGTAATGTTGGGACATATATGCATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718315" ref_strand="+" ref_description="SGN-E718315 [FC04BC05]">
      <seq>gattggcggcaaatcggccgaattccatggggatccgatgatatcaagttgagtgaaattaattaactgtgtgttaagtttaattaagaagttaattagcaataaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagagagagatagatgcctattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaattaatcaagaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtaccagaagattcagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaaaactaaacccggtccagccggaatcaacgcttgaaccatcgtttggctttagaccggttgctaataagtactagtatatatagtacttttttttggttaattttattttttttatgacaaactacttttagtttaatttgcgaaagtatttgtatttgagttgatatttaaagtttgtgttaagaggtgtcgatgcttgtaatgttgggacatatatgcatgtcgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103287" stop="105310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103597" g_stop="103720" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="169" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="294" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="395" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105010" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="737" r_length="342" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E718315" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103597" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGAGTGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAG----TATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTG</genome_strand>
        <mrna_strand>AAGTTGAGTGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAATAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAGAGAGATAGATGCCTATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAATTAATCAAGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACCAGAAGATTCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAAAACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCATCGTTTGGCTTTAGACCGG-TTGCTAATAAGTACTAGTATATATAGTACTTTTTTTTGGTTAATTTT-A-TTTTTTTTATGACAAACTACTTTTAGTTTAATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAAAGTTTGTGTTAAGAGGTGTCGATGCTTGTAATGTTGGGACATATATGCATGTCGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377068" ref_strand="+" ref_description="SGN-E377068 [TUS-21-C23](-)">
      <seq>tgaaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgtcgttgtaatatattttttgtgctttcttcgataaaagttaaagtatattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103305" stop="105358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103605" g_stop="103720" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="241" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="342" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105064" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="737" r_length="395" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E377068" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103605" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAATATTTTGA</genome_strand>
        <mrna_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376902" ref_strand="+" ref_description="SGN-E376902 [TUS-19-L21]">
      <seq>tgaaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103305" stop="105296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103605" g_stop="103720" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="241" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="342" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104996" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="669" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E376902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103605" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATA</genome_strand>
        <mrna_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258692" ref_strand="+" ref_description="SGN-E258692 [cLEG-50-L9]">
      <seq>tgaaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtacttttttttaagttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103305" stop="105251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103605" g_stop="103720" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="241" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="342" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104951" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="625" r_length="283" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E258692" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103605" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTT-TAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTT</genome_strand>
        <mrna_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTTAAGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276330" ref_strand="+" ref_description="SGN-E276330 [cLEN-21-F12]">
      <seq>cgggctccaggattcggcacgagattaattaactgtgtgttaagtttaattattaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103306" stop="105223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103605" g_stop="103720" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="135" r_length="116" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="260" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="361" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104923" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="615" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E276330" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103605" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGC</genome_strand>
        <mrna_strand>CGAGATTAATTAACTGTGTGTTAAGTTTAATTATTAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260035" ref_strand="+" ref_description="SGN-E260035 [cLEG-52-C6]">
      <seq>tgaaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccgggatcaacgcttgaaccgtcgtttggctttagaccggnttgcntataagtactagtatagtacttttttttaggntaattttaatttttttttatgacaaattactttttattttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103305" stop="105221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103605" g_stop="103720" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="241" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="342" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104921" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="595" r_length="253" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E260035" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103605" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTAC-TTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTT</genome_strand>
        <mrna_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGGATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGNTTGCNTATAAGTACTAGTATAGTACTTTTTTTTAGGNTAATTTTAATTTTTTTTTATGACAAATTACTTTTTATTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261152" ref_strand="+" ref_description="SGN-E261152 [cLEG-65-H16]">
      <seq>tgaaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103305" stop="105156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103605" g_stop="103720" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="241" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="342" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104856" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="529" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E261152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103605" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACT</genome_strand>
        <mrna_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231158" ref_strand="+" ref_description="SGN-E231158 [cLED-5-O19]">
      <seq>tgaaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103305" stop="105133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103605" g_stop="103720" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="241" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="342" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104833" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="506" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E231158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103605" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTT</genome_strand>
        <mrna_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240963" ref_strand="+" ref_description="SGN-E240963 [cLED-24-B17]">
      <seq>tgaaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcangaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103305" stop="105059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103605" g_stop="103720" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="241" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="342" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104759" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E240963" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103605" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGT</genome_strand>
        <mrna_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCANGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240037" ref_strand="+" ref_description="SGN-E240037 [cLED-32-G10]">
      <seq>tgaaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103305" stop="105059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103605" g_stop="103720" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="241" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="342" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104759" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E240037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103605" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGT</genome_strand>
        <mrna_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377338" ref_strand="+" ref_description="SGN-E377338 [TUS-21-C22]">
      <seq>gaaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattntatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatccatacatgtcgttgaaatatattttttggtgctttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103306" stop="105333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103606" g_stop="103720" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="240" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="341" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105033" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="706" r_length="365" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E377338" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103606" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTT-GTGCTTTCTT</genome_strand>
        <mrna_strand>GAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTNTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATCCATACATGTCGTTGAAATATATTTTTTGGTGCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236577" ref_strand="+" ref_description="SGN-E236577 [cLED-13-O10]">
      <seq>gaaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaattnttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103306" stop="105288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103606" g_stop="103720" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="240" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="341" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104988" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="660" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E236577" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103606" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTT</genome_strand>
        <mrna_strand>GAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTNTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276375" ref_strand="+" ref_description="SGN-E276375 [cLEN-17-M17]">
      <seq>gaaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103306" stop="104457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103606" g_stop="103720" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="240" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="341" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E276375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103606" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG</genome_strand>
        <mrna_strand>GAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236044" ref_strand="+" ref_description="SGN-E236044 [cLED-16-H9]">
      <seq>gaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103308" stop="105086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103607" g_stop="103720" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="239" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="340" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104786" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="457" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E236044" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103607" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACAC</genome_strand>
        <mrna_strand>GAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276716" ref_strand="+" ref_description="SGN-E276716 [cLEN-14-L11]">
      <seq>aattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103308" stop="105251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103608" g_stop="103720" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="238" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="339" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104951" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="621" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E276716" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103608" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTT</genome_strand>
        <mrna_strand>AATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275402" ref_strand="+" ref_description="SGN-E275402 [cLEN-10-F11]">
      <seq>aattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgaggtgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103308" stop="105249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103608" g_stop="103720" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="238" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="339" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104949" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="619" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E275402" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103608" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATAT</genome_strand>
        <mrna_strand>AATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGGTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274822" ref_strand="+" ref_description="SGN-E274822 [cLEN-13-L11]">
      <seq>aattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcctattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagcccaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaaggttggatcaactaatcaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103308" stop="104448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103608" g_stop="103720" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="238" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104148" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="332" r_length="94" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E274822" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103608" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAA</genome_strand>
        <mrna_strand>AATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCCTATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCCAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGGTTGGATCAACTAATCAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236448" ref_strand="+" ref_description="SGN-E236448 [cLED-13-L3]">
      <seq>attaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103309" stop="105303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103609" g_stop="103720" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="237" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="338" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105003" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="672" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E236448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103609" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACAT</genome_strand>
        <mrna_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304748" ref_strand="+" ref_description="SGN-E304748 [cLEX-11-H8]">
      <seq>gccgattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtacttttttttaggttaattttaatttttttttatgacaaattacttttaattttatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103313" stop="105222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103609" g_stop="103720" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="237" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="338" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104922" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="592" r_length="254" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E304748" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103609" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTAC-TTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTG</genome_strand>
        <mrna_strand>GCCGATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276139" ref_strand="+" ref_description="SGN-E276139 [cLEN-12-N12]">
      <seq>attaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103309" stop="105218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103609" g_stop="103720" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="237" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="338" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104918" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="587" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E276139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103609" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTA</genome_strand>
        <mrna_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235885" ref_strand="+" ref_description="SGN-E235885 [cLED-16-M7]">
      <seq>attaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaaccgtcgttggctttagaccgttttgctaataagtactagtatagtactttttttaggttaattttaattttttttatgacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103309" stop="105204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103609" g_stop="103720" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="237" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="338" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104904" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="572" r_length="234" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E235885" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103609" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTG-AACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAAT</genome_strand>
        <mrna_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAAACCGTCG-TTGGCTTTAGACCGTTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAA-TTTTTTTTATGACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201690" ref_strand="+" ref_description="SGN-E201690 [cLEC-11-L4]">
      <seq>attaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103309" stop="105059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103609" g_stop="103720" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="237" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="338" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104759" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="428" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E201690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103609" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGT</genome_strand>
        <mrna_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241356" ref_strand="+" ref_description="SGN-E241356 [cLED-28-B3]">
      <seq>attaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103309" stop="105057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103609" g_stop="103720" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="237" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="338" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104757" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="426" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E241356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103609" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCAC</genome_strand>
        <mrna_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273566" ref_strand="+" ref_description="SGN-E273566 [cLEN-6-D10]">
      <seq>attaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaagaggcaactaaaacagcggaagaaagcctttctaatttggaaaatgaggaaagtttggatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103309" stop="104435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103609" g_stop="103720" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="237" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104135" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="318" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E273566" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103609" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAA</genome_strand>
        <mrna_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAAGAGGCAACTAAAACAGCGGAAGAAAGCCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244872" ref_strand="+" ref_description="SGN-E244872 [cLEF-2-J21]">
      <seq>attaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataattcattaacaaagaaagagatagatgcatattggacatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103309" stop="104233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103609" g_stop="103720" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103933" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="220" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E244872" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103609" e_stop="103720"/>
          <exon e_start="103826" e_stop="103933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCC</genome_strand>
        <mrna_strand>ATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAATTCATTAACAAAGAAAGAGATAGATGCATATTGGACATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368098" ref_strand="+" ref_description="SGN-E368098 [TUS-22-K16]">
      <seq>ttaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttntttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103310" stop="105257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103610" g_stop="103720" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="236" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="337" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104957" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="625" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E368098" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103610" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTT</genome_strand>
        <mrna_strand>TTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTNTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247886" ref_strand="+" ref_description="SGN-E247886 [cLEF-47-M16]">
      <seq>ttaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103310" stop="105222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103610" g_stop="103720" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="236" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="337" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104922" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="590" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E247886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103610" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTG</genome_strand>
        <mrna_strand>TTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237586" ref_strand="+" ref_description="SGN-E237586 [cLED-19-N10]">
      <seq>ttaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103310" stop="105060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103610" g_stop="103720" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="236" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="337" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104760" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="428" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E237586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103610" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTA</genome_strand>
        <mrna_strand>TTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244595" ref_strand="+" ref_description="SGN-E244595 [cLED-38-B2]">
      <seq>ttaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103310" stop="104422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103610" g_stop="103720" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="236" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104122" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="304" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E244595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103610" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGA</genome_strand>
        <mrna_strand>TTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305542" ref_strand="+" ref_description="SGN-E305542 [cLEX-14-G5]">
      <seq>taattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgtcgttgtaatatattttttgtgctttcttcgattaaagttaaagtatattaatattttgatgtgataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103311" stop="105373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103611" g_stop="103720" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="235" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="336" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105078" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="745" r_length="409" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E305542" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103611" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAATATTTTGATGTGATATATTTTT</genome_strand>
        <mrna_strand>TAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATTAAAGTTAAAGTATATTAATATTTTGATGTGATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213680" ref_strand="+" ref_description="SGN-E213680 [cLEC-76-F21]">
      <seq>aattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaagttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagttttgcgtaaaagatgtcgatacttgtaatgttgggacatacatacatgtccgtgtaatatattttttgtgctttcttccataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103312" stop="105341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103612" g_stop="103720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="234" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="335" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105049" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="715" r_length="380" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E213680" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103612" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAG-TTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGT</genome_strand>
        <mrna_strand>AATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAAGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTTGCG-TAAAAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCCGTGTAATATATTTTTTGTGCTTTCTTCCATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206828" ref_strand="+" ref_description="SGN-E206828 [cLEC-33-M3]">
      <seq>attaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgtcggtgtaatatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103313" stop="105322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103613" g_stop="103720" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="233" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="334" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105022" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="687" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E206828" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103613" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTT</genome_strand>
        <mrna_strand>ATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGGTGTAATATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241774" ref_strand="+" ref_description="SGN-E241774 [cLEE-10-G9]">
      <seq>attaactgtttgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgtcgttgtaatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103313" stop="105319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103613" g_stop="103720" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="233" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="334" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105019" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="684" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E241774" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103613" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATT</genome_strand>
        <mrna_strand>ATTAACTGTTTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206091" ref_strand="+" ref_description="SGN-E206091 [cLEC-29-E17]">
      <seq>attaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattntaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103313" stop="105306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103613" g_stop="103720" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="233" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="334" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105006" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="671" r_length="337" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E206091" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103613" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTC</genome_strand>
        <mrna_strand>ATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTNTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277068" ref_strand="+" ref_description="SGN-E277068 [cLEN-22-N17]">
      <seq>attaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaacaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103313" stop="105251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103613" g_stop="103720" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="233" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="334" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104951" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="616" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E277068" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103613" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTT</genome_strand>
        <mrna_strand>ATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAACAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213571" ref_strand="+" ref_description="SGN-E213571 [cLEC-71-H2]">
      <seq>attaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttattttaatttttttttatgacaaattacttttaatttatttgcgaaagtatttgtatttgagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103313" stop="105247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103613" g_stop="103720" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="233" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="334" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104947" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="610" r_length="276" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E213571" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103613" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGAT</genome_strand>
        <mrna_strand>ATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTT-ATTTTAATTTTTTTTTATGACAAATTACTTTTAA-TTTATTTGCGAAAGTATTTGTATTTGAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244816" ref_strand="+" ref_description="SGN-E244816 [cLEF-2-I19]">
      <seq>attaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103313" stop="105042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103613" g_stop="103720" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="233" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="334" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104742" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="407" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E244816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103613" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATAC</genome_strand>
        <mrna_strand>ATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269790" ref_strand="+" ref_description="SGN-E269790 [cLEM-17-E15]">
      <seq>ttaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103314" stop="105184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103614" g_stop="103720" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="232" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="333" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104884" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="548" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E269790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103614" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTT</genome_strand>
        <mrna_strand>TTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268775" ref_strand="+" ref_description="SGN-E268775 [cLEM-16-H2]">
      <seq>ttaactgtgtgttaagtttaattaagaagttaattatcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103314" stop="105059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103614" g_stop="103720" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="232" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="333" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104759" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="423" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E268775" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103614" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGT</genome_strand>
        <mrna_strand>TTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTATCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274346" ref_strand="+" ref_description="SGN-E274346 [cLEN-15-D8]">
      <seq>aactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttaagaccggtttgctaataagtactagtatagtaccttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103316" stop="105173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103616" g_stop="103720" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="230" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="331" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104874" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="537" r_length="206" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E274346" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103616" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTT-AGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTA</genome_strand>
        <mrna_strand>AACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAAGACCGGTTTGCTAATAAGTACTAGTATAGTACCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249475" ref_strand="+" ref_description="SGN-E249475 [cLEF-56-E18]">
      <seq>tgttaagtttaattaagaagttaatgtagcaacagaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103323" stop="105199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103623" g_stop="103720" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="224" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="325" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104899" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="555" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E249475" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103623" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGTTTAATTAAGAAGTTAAT-TAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGA</genome_strand>
        <mrna_strand>TGTTAAGTTTAATTAAGAAGTTAATGTAGCAACAGAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205874" ref_strand="+" ref_description="SGN-E205874 [cLEC-20-N15]">
      <seq>taagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccactagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttanagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgtcgttgtaatatattttttgggctttcttcgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103326" stop="105341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103626" g_stop="103720" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="220" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="321" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105048" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="700" r_length="379" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E205874" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103626" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAG</genome_strand>
        <mrna_strand>TAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCACTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTANAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGGGCTTTCTTCGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207813" ref_strand="+" ref_description="SGN-E207813 [cLEC-32-P15]">
      <seq>taagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103326" stop="105166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103626" g_stop="103720" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="220" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="321" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104866" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="518" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E207813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103626" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTAC</genome_strand>
        <mrna_strand>TAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721695" ref_strand="+" ref_description="SGN-E721695 [FC14DF09]">
      <seq>agggcgattggcggcccatcggccgaattggaaattaattaactcctttaagggtttaattaagaagttaattagcaataaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagagagagatagatgcctattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaattaatcaagaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtaccagaagattcagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaaaactaaacccggtccagccggaatcaacgcttgaaccatcgtttggctttagaccggttgctaataagtactagtatatatagtacttttttttggttaattttattttttttatgacaaactacttttagtttaatttgcgaaagtatttgtatttgagttgatatttagagtttgtgttaagaggtgtcgatgcttgtaatgttgggacatatatgcatgtcgttgtaatatattttttgtgctttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103329" stop="105333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103630" g_stop="103720" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="145" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="270" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="371" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105033" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="736" r_length="365" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E721695" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103630" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAG----TATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTT</genome_strand>
        <mrna_strand>TTTAATTAAGAAGTTAATTAGCAATAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAGAGAGATAGATGCCTATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAATTAATCAAGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACCAGAAGATTCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAAAACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCATCGTTTGGCTTTAGACCGG-TTGCTAATAAGTACTAGTATATATAGTACTTTTTTTTGGTTAATTTT-A-TTTTTTTTATGACAAACTACTTTTAGTTTAATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGTGTTAAGAGGTGTCGATGCTTGTAATGTTGGGACATATATGCATGTCGTTGTAATATATTTTTTGTGCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337767" ref_strand="+" ref_description="SGN-E337767 [cTOE-17-H1]">
      <seq>tttaattaagaagttaattatttacaaaaagagataattatgggttctcttatggcgggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaagaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccgggccagccggaatcaacgcttgaaccgtcgtttggctatagaccggtttgctaataagtactaggataggactttttttaggttaattttaatttttttttatgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103330" stop="105202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103630" g_stop="103720" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="216" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="317" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104902" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="550" r_length="233" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E337767" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103630" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAA</genome_strand>
        <mrna_strand>TTTAATTAAGAAGTTAATTATTTACAAAAAGAGATAATTATGGGTTCTCTTATGGCGGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAAGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGGCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTATAGACCGGTTTGCTAATAAGTACTAGGATAGGACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302034" ref_strand="+" ref_description="SGN-E302034 [cLEX-3-O20]">
      <seq>tttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaagaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103330" stop="105091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103630" g_stop="103720" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="216" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="317" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104791" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="439" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E302034" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103630" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAAC</genome_strand>
        <mrna_strand>TTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAAGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334811" ref_strand="+" ref_description="SGN-E334811 [cTOE-3-C1]">
      <seq>tttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103330" stop="105056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103630" g_stop="103720" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="216" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="317" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104756" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="404" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E334811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103630" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCA</genome_strand>
        <mrna_strand>TTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335292" ref_strand="+" ref_description="SGN-E335292 [cTOE-1-H13]">
      <seq>tttaattaaaaagttaattatcaacaaagggagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaagaaaaatggatggtggataagtagcaattgggcacatttaaatgagccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103330" stop="105008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103630" g_stop="103720" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="216" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="317" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104708" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="356" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E335292" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103630" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACC</genome_strand>
        <mrna_strand>TTTAATTAAAAAGTTAATTATCAACAAAGGGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAAGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212745" ref_strand="+" ref_description="SGN-E212745 [cLEC-73-D2]">
      <seq>ttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaattttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgtcgntgtaatatattttttgtgctttcttcgataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103331" stop="105341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103631" g_stop="103720" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="215" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="316" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105043" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="691" r_length="375" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E212745" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103631" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAA-TTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGT</genome_strand>
        <mrna_strand>TTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGNTGTAATATATTTTTTGTGCTTTCTTCGATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250862" ref_strand="+" ref_description="SGN-E250862 [cLEG-13-J15]">
      <seq>taagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtgattatcaaagaaagagatagatgcattttggggatccaaaaaactaattgaagaagagcatcaaaaatatatctgtacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103336" stop="105100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103636" g_stop="103720" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="210" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="311" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104800" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="442" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E250862" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103636" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAG</genome_strand>
        <mrna_strand>TAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTGATTATCAAAGAAAGAGATAGATGCATTTTGGGGATCCAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTGTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377337" ref_strand="+" ref_description="SGN-E377337 [TUS-21-C22](-)">
      <seq>aaaaaaaataattatgggttctcttatggcagggttggacttttcctgtttctgatcctcagcctatgaaattacgaacaaataaagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgtcgttgtaatatattttttgtgctttcttcgataaaagttaaagtatattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103356" stop="105358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103656" g_stop="103720" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="192" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="293" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105064" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="688" r_length="395" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E377337" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103656" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGAC-TCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAAT-AAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAATATTTTGA</genome_strand>
        <mrna_strand>AAAAAAAATAATTATGGGTTCTCTTATGGCAGGGTTGGACTTTTCCTGTTTCTGATCCTCAGCCTA.........................................................................................................TGAAATTACGAACAAATAAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335289" ref_strand="+" ref_description="SGN-E335289 [cTOE-1-F17]">
      <seq>gataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagattgatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcatgaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103362" stop="105010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103662" g_stop="103720" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="184" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="285" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104710" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="326" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E335289" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103662" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAG</genome_strand>
        <mrna_strand>GATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATTGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCATGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201443" ref_strand="+" ref_description="SGN-E201443 [cLEC-4-E13]">
      <seq>caggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103385" stop="105115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103685" g_stop="103720" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="161" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="262" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="104815" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="408" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E201443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103685" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTT</genome_strand>
        <mrna_strand>CAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200299" ref_strand="+" ref_description="SGN-E200299 [cLEC-12-L4]">
      <seq>tgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103390" stop="104450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103690" g_stop="103720" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="156" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104150" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="252" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E200299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103690" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAAT</genome_strand>
        <mrna_strand>TGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303764" ref_strand="+" ref_description="SGN-E303764 [cLEX-4-E2]">
      <seq>ctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtacttttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103400" stop="105303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103700" g_stop="103720" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="147" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="248" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105003" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="583" r_length="335" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E303764" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103700" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCA-AAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTAC-TTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACAT</genome_strand>
        <mrna_strand>CTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248045" ref_strand="+" ref_description="SGN-E248045 [cLEF-47-O24]">
      <seq>aaagaaagagatagatgcatattggagatcaaaaaaactaagtgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103554" stop="105224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103854" g_stop="103950" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="198" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104670" g_stop="104924" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="453" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E248045" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103854" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="104924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCG</genome_strand>
        <mrna_strand>AAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAAGTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213832" ref_strand="+" ref_description="SGN-E213832 [cLEC-76-B19]">
      <seq>atattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtacttttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgtcgttgtaatatattttttgtgctttcttcgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103572" stop="105341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103872" g_stop="103950" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="180" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104670" g_stop="105044" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="556" r_length="376" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E213832" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103872" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTAC-TTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTT</genome_strand>
        <mrna_strand>ATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376901" ref_strand="+" ref_description="SGN-E376901 [TUS-19-L21](-)">
      <seq>gatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgtcgttgtaatatattttttgtgctttcttcgataaaagttaaagtatattaatattttgatgtgatatatttttttctgcaaattttataaaatttaatttgtagaaggtaaaaaaaaaaaaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103580" stop="105417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103880" g_stop="103950" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="172" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104670" g_stop="105116" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="619" r_length="447" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="646"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E376901" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103880" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAATATTTTGATGTGATATATTTTTTTCTGCAAATTTTATAAAATTTAATTTGTAGAATGTAA</genome_strand>
        <mrna_strand>GATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAATATTTTGATGTGATATATTTTTTTCTGCAAATTTTATAAAATTTAATTTGTAGAAGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201068" ref_strand="+" ref_description="SGN-E201068 [cLEC-10-E13]">
      <seq>aaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103585" stop="105305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103885" g_stop="103950" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="167" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104670" g_stop="105005" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="503" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E201068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103885" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGT</genome_strand>
        <mrna_strand>AAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241775" ref_strand="+" ref_description="SGN-E241775 [cLEE-10-G9](-)">
      <seq>aagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgtcgttgtaatataaaatttgtgctttcttcgataaaagttaaagtatattaatataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103823" stop="105359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104123" g_stop="104155" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104670" g_stop="105057" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="421" r_length="388" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="422" polyA_stop="441"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E241775" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104123" e_stop="104155"/>
          <exon e_start="104670" e_stop="105057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAAT</genome_strand>
        <mrna_strand>AAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATAAAATTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240420" ref_strand="+" ref_description="SGN-E240420 [cLED-25-B14]">
      <seq>ttgttctctccatgtaaatcaagattttttttaatttcattgttaatctttatattattgtaggatcgaatttattttgtggcataactcaacgaagaaggctcttgaatgttagtttgccaaaagggatgtcggataagagtaacaaaaattgtgcattgattatacattattatttttatgtattttcttatgattaaggtcctaaggaactaagaaagatagatgtgttgtgtgttctctccatgtaactcaagattatttttttaatttcattggtaatatttataaatattattattattataggatcacattcatcttttagcataactagatgaagaagacttttaaatgttgattagtctgtcgaaaaggatgttggacaaaagttcaaaaaaactgtgcatcgatctatatttcaatttttcatttattttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="111481" stop="110440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111181" g_stop="110740" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E240420" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111181" e_stop="110740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTCTCCATGTAAATTAAGATTTTTTTT-ATTTCATTGTTAATCTTTCTATTATTGTAGGATCGAAATTATTTTGTGGCATAACTCAACGAAGAAGGCTCTTGGATGTTAGTTTGCCAAAAGGGATGTCGGATAAGAGTAACAAAAATTGTGCATTGATTATACATTATTATTTTTATGTATTTTCTTATGATTAAGGTCCTAAGGAACTAAGAAAGATAGATGTGTTGTGTGTTCTCTCCATGTAACTCAAGATTATTTTTTTTATTTTATTGTTAATATTTATAAATATTATTATTATTATAGGATCACATTCATCTTTTAGCATAACTCGATGAAGAAGACTTTTAAATGTTGATTAGTCTGTCAAAAAGGATGTAGGACAAAAGTTCAAAAAAACTGTGCATCGATCTATATTTTTATTTTTCATTTATTTTCTT</genome_strand>
        <mrna_strand>TTGTTCTCTCCATGTAAATCAAGATTTTTTTTAATTTCATTGTTAATCTTTATATTATTGTAGGATCGAATTTATTTTGTGGCATAACTCAACGAAGAAGGCTCTTGAATGTTAGTTTGCCAAAAGGGATGTCGGATAAGAGTAACAAAAATTGTGCATTGATTATACATTATTATTTTTATGTATTTTCTTATGATTAAGGTCCTAAGGAACTAAGAAAGATAGATGTGTTGTGTGTTCTCTCCATGTAACTCAAGATTATTTTTTTAATTTCATTGGTAATATTTATAAATATTATTATTATTATAGGATCACATTCATCTTTTAGCATAACTAGATGAAGAAGACTTTTAAATGTTGATTAGTCTGTCGAAAAGGATGTTGGACAAAAGTTCAAAAAAACTGTGCATCGATCTATATTTCAATTTTTCATTTATTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745210" ref_strand="+" ref_description="SGN-E745210 [GI|47105836]">
      <seq>ggtacacaaaacaacacaactaaattcttgagaaagttctttaattttcaaatcaaaatctcttttaagttttatttttatcaaatggctgagaaaagcaaagttttgattattggaggaacagggtatattggtaaatttgtagttgaagctagtgcaaaatctggacacccaacttttgctttagttagagagaccacagtttctgatcctgataagggcaaaattgttgaaaatttcaagaatttgggtgtcactattattaatggtgatttgtatgatcatgagagtttgctgaaggctataaaacaagtggatgtggtgatatcaactgttggtgcaatgcaattggctgatcaagttaagattattgatgctattaaagaagctggcaatattaagaggttcttcccttcggagtttggtatggatgtcgataagatcaatgctgtggagccagcaaagtctacatttgctgtgaaagttcaaatccgaagagctattgaggctgcagaaattccctatactaatgtctcatgtaactattttgctggttatttcttaccaactttggtccagccaggagtcactgctcctcctcgagacaaagtcatcattcccggagatggaaatgttaaggctgtattcaatgaagaacatgatattggcacctacaccattaaggctattgatgacccgagaacgttgaacaagaccctttacatcaggcctctcaagaacaccttatcgttcaacgagcttgtggctatatgggagaaactgattggtaaaactctcgagaaaatctacgttccagaggagcaaattctcaaagacatccagacatctccaataccaatcaatatcatactagcaatcaaccactcaacattcgtgaagggtgatcaaaccaattttgagatagagccatcgtttggggtagaggcctcggaactttatccagatgttaagtacactacagtggaggagtaccttggccactttgtctaaaccacacctttgaggtctccgatcgttcaaataaactgttagatgatgagtgttatcagacattttatatggaagtatgagtacttgttcactatgtcatcggagacacgttgaatggtatgtttttaagtctgtttttagtgtccacactgtgtagtactataatgaagctacagaaaatggattgttgcattgttgctctaccatcttgtacaagttttaaggtgtgatgtaatatgcaaaagcttgttgtcaataaggatcaatcaaagaggactctatttcagttttcttatcgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="111799" stop="114446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112098" g_stop="112364" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112365" i_stop="112455" i_length="91">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112456" g_stop="112590" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="402" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112591" i_stop="113058" i_length="468">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.581" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113059" g_stop="113296" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="640" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113297" i_stop="113393" i_length="97">
            <donor d_prob="0.651" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113394" g_stop="113597" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="844" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113598" i_stop="113680" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113681" g_stop="114151" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="845" r_stop="1315" r_length="471" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1316" polyA_stop="1326"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E745210" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1315</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112098" e_stop="112364"/>
          <exon e_start="112456" e_stop="112590"/>
          <exon e_start="113059" e_stop="113296"/>
          <exon e_start="113394" e_stop="113597"/>
          <exon e_start="113681" e_stop="114151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACACAAAACAACACAACTAAATTCTTGAGAAAGTTCTTTAATTTTCAAATCAAAATCTCTTTTAAGTTTTATTTTTATCAAATGGCTGAGAAAAGCAAAGTTTTGATTATTGGAGGAACAGGGTATATTGGTAAATTTGTAGTTGAAGCTAGTGCAAAATCTGGACACCCAACTTTTGCTTTAGTTAGAGAGACCACAGTTTCTGATCCTGATAAGGGCAAAATTGTTGAAAATTTCAAGAATTTGGGTGTCACTATTATTAATGTATGTGTATATTATATGGTGTATTTGTTAATAAATTTTGTATATGCAAGTATATTTTAGTTTCTTTGTTGTTTTTTTTTTAAAAAAACAGGGTGATTTGTATGATCATGAGAGTTTGCTGAAGGCTATAAAACAAGTGGATGTGGTGATATCAACTGTTGGTGCAATGCAATTGGCTGATCAAGTTAAGATTATTGATGCTATTAAAGAAGCTGGCAATATTAAGGTTAGTTGCTTCTTGTTTTTTTTGGGTAACGAGGTTGAACTGGTTAAACTTGGGACAGAGGGGATGATGGTGATCTTGAATATAGTAATTGTTGATAAAGTTCTTGAATTTATAGATCATATTTTAATTAGAGAATTTGGAGTATCAAAGGGATCTTAAATCTATGTTGGTCGGATTCTTCAATAATGTTGATGGTTGCCTGTTGGATCGTCCAAAAGTAGTGTAGTGTTGGAGAATCCAACATAGGTGTAACAACATATTTGGAGAGTTTGAGCAACATAGCGTTGATTAAAGGCATAAAATGAGTTAGATTACTTATTGTTTAATATGGCCAAGTGTATGACAGAAGTATGCATCAACTTTGTGTAAATGTTTCAATTTTTACAAGAACATTTCACTGGAGAATCTGAAAATGATTAAGATAATGTGTTCACAGAGCTAAATCATCTTATGCTAAAACAATTTCAGAGGTTCTTCCCTTCGGAGTTTGGTATGGATGTCGATAAGATCAATGCTGTGGAGCCAGCAAAGTCTACATTTGCTGTGAAAGTTCAAATCCGAAGAGCTATTGAGGCTGCAGAAATTCCCTATACTAATGTCTCATGTAACTATTTTGCTGGTTATTTCTTACCAACTTTGGTCCAGCCAGGAGTCACTGCTCCTCCTCGAGACAAAGTCATCATTCCCGGAGATGGAAATGTTAAGGGTACGTTGAAAAGAAATCCTTAGGAAGCGTGCCAACAGAACAAGTTACATGACAAAATGTTTCATTTTTGTTTACTTTTTGTTCTGTTTGTCTGCAGCTGTATTCAATGAAGAACATGATATTGGCACCTACACCATTAAGGCTATTGATGACCCGAGAACGTTGAACAAGACCCTTTACATCAGGCCTCTCAAGAACACCTTATCGTTCAACGAGCTTGTGGCTATATGGGAGAAACTGATTGGTAAAACTCTCGAGAAAATCTACGTTCCAGAGGAGCAAATTCTCAAAGACATCCAGAGTCAGTAATCTTTATATCATTCATCTGTTTCTTTCAATTTAAACATACGTAATCCTGACAATCTATATTGCATACTGTTGCAGCATCTCCAATACCAATCAATATCATACTAGCAATCAACCACTCAACATTCGTGAAGGGTGATCAAACCAATTTTGAGATAGAGCCATCGTTTGGGGTAGAGGCCTCGGAACTTTATCCAGATGTTAAGTACACTACAGTGGAGGAGTACCTTGGCCACTTTGTCTAAACCACACCTTTGAGGTCTCCGATCGTTCAAATAAACTGTTAGATGATGAGTGTTATCAGACATTTTATCTGGAAGTATGAGTACTTGTTCACTATGTCATCGGAGACACGTTGAATGGTATGTTTTTAAGTCTGTTTTTAGTGTCCACACTGTGTAGTACTATAATGAAGCTACAGAAAATGGATTGTTGCATTGTTGCTCTACCATCTTGTACAAGTTTTAAGGTGTGATGTAATATGCAAAAGCTTGTTGTCAATAAGGATCAATCAAAGAGGACTCTATTTCAGTTTTCTTATGAATTCAG</genome_strand>
        <mrna_strand>GGTACACAAAACAACACAACTAAATTCTTGAGAAAGTTCTTTAATTTTCAAATCAAAATCTCTTTTAAGTTTTATTTTTATCAAATGGCTGAGAAAAGCAAAGTTTTGATTATTGGAGGAACAGGGTATATTGGTAAATTTGTAGTTGAAGCTAGTGCAAAATCTGGACACCCAACTTTTGCTTTAGTTAGAGAGACCACAGTTTCTGATCCTGATAAGGGCAAAATTGTTGAAAATTTCAAGAATTTGGGTGTCACTATTATTAAT...........................................................................................GGTGATTTGTATGATCATGAGAGTTTGCTGAAGGCTATAAAACAAGTGGATGTGGTGATATCAACTGTTGGTGCAATGCAATTGGCTGATCAAGTTAAGATTATTGATGCTATTAAAGAAGCTGGCAATATTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTCTTCCCTTCGGAGTTTGGTATGGATGTCGATAAGATCAATGCTGTGGAGCCAGCAAAGTCTACATTTGCTGTGAAAGTTCAAATCCGAAGAGCTATTGAGGCTGCAGAAATTCCCTATACTAATGTCTCATGTAACTATTTTGCTGGTTATTTCTTACCAACTTTGGTCCAGCCAGGAGTCACTGCTCCTCCTCGAGACAAAGTCATCATTCCCGGAGATGGAAATGTTAAGG.................................................................................................CTGTATTCAATGAAGAACATGATATTGGCACCTACACCATTAAGGCTATTGATGACCCGAGAACGTTGAACAAGACCCTTTACATCAGGCCTCTCAAGAACACCTTATCGTTCAACGAGCTTGTGGCTATATGGGAGAAACTGATTGGTAAAACTCTCGAGAAAATCTACGTTCCAGAGGAGCAAATTCTCAAAGACATCCAGA...................................................................................CATCTCCAATACCAATCAATATCATACTAGCAATCAACCACTCAACATTCGTGAAGGGTGATCAAACCAATTTTGAGATAGAGCCATCGTTTGGGGTAGAGGCCTCGGAACTTTATCCAGATGTTAAGTACACTACAGTGGAGGAGTACCTTGGCCACTTTGTCTAAACCACACCTTTGAGGTCTCCGATCGTTCAAATAAACTGTTAGATGATGAGTGTTATCAGACATTTTATATGGAAGTATGAGTACTTGTTCACTATGTCATCGGAGACACGTTGAATGGTATGTTTTTAAGTCTGTTTTTAGTGTCCACACTGTGTAGTACTATAATGAAGCTACAGAAAATGGATTGTTGCATTGTTGCTCTACCATCTTGTACAAGTTTTAAGGTGTGATGTAATATGCAAAAGCTTGTTGTCAATAAGGATCAATCAAAGAGGACTCTATTTCAGTTTTCTTATCGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313339" ref_strand="+" ref_description="SGN-E313339 [cTOA-13-M16]">
      <seq>aaagttctttaattttcaaatcaaaatctgttttaagttgtatttttatcaaatggctgagaaaagcaaagttttgattattggaggaacagggtatattggtaaatttgtagttgaagctagtgcaaaatctggacacccaacttttgctttagttagagagaccacagtttctgatcctgataagggcaaaattgttgaaaatttcaagaatttgggtgtcactattattaatggtgatttgtatgatcatgagagtttgctgaaggctataaaacaagtggatgtggtgatatcaactgttggtgcaatgcaattggctgatcaagttaagattattgatgctattaaagaagctggcaatattaagaggttcttcccttcggagtttggtatggatgtcgataagatcaatgctgtggagccagcaaagtctacatttgctgtgaaagttcaaatccgaagagctattgaggctgcagaaattccctatactaatgtctcatgtaactatcttgctggttatttcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="111830" stop="113521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112130" g_stop="112364" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112365" i_stop="112455" i_length="91">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112456" g_stop="112590" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="370" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112591" i_stop="113058" i_length="468">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.581" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113059" g_stop="113221" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="533" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E313339" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112130" e_stop="112364"/>
          <exon e_start="112456" e_stop="112590"/>
          <exon e_start="113059" e_stop="113221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCTTTAATTTTCAAATCAAAATCTCTTTTAAGTTTTATTTTTATCAAATGGCTGAGAAAAGCAAAGTTTTGATTATTGGAGGAACAGGGTATATTGGTAAATTTGTAGTTGAAGCTAGTGCAAAATCTGGACACCCAACTTTTGCTTTAGTTAGAGAGACCACAGTTTCTGATCCTGATAAGGGCAAAATTGTTGAAAATTTCAAGAATTTGGGTGTCACTATTATTAATGTATGTGTATATTATATGGTGTATTTGTTAATAAATTTTGTATATGCAAGTATATTTTAGTTTCTTTGTTGTTTTTTTTTTAAAAAAACAGGGTGATTTGTATGATCATGAGAGTTTGCTGAAGGCTATAAAACAAGTGGATGTGGTGATATCAACTGTTGGTGCAATGCAATTGGCTGATCAAGTTAAGATTATTGATGCTATTAAAGAAGCTGGCAATATTAAGGTTAGTTGCTTCTTGTTTTTTTTGGGTAACGAGGTTGAACTGGTTAAACTTGGGACAGAGGGGATGATGGTGATCTTGAATATAGTAATTGTTGATAAAGTTCTTGAATTTATAGATCATATTTTAATTAGAGAATTTGGAGTATCAAAGGGATCTTAAATCTATGTTGGTCGGATTCTTCAATAATGTTGATGGTTGCCTGTTGGATCGTCCAAAAGTAGTGTAGTGTTGGAGAATCCAACATAGGTGTAACAACATATTTGGAGAGTTTGAGCAACATAGCGTTGATTAAAGGCATAAAATGAGTTAGATTACTTATTGTTTAATATGGCCAAGTGTATGACAGAAGTATGCATCAACTTTGTGTAAATGTTTCAATTTTTACAAGAACATTTCACTGGAGAATCTGAAAATGATTAAGATAATGTGTTCACAGAGCTAAATCATCTTATGCTAAAACAATTTCAGAGGTTCTTCCCTTCGGAGTTTGGTATGGATGTCGATAAGATCAATGCTGTGGAGCCAGCAAAGTCTACATTTGCTGTGAAAGTTCAAATCCGAAGAGCTATTGAGGCTGCAGAAATTCCCTATACTAATGTCTCATGTAACTATTTTGCTGGTTATTTCTTAC</genome_strand>
        <mrna_strand>AAAGTTCTTTAATTTTCAAATCAAAATCTGTTTTAAGTTGTATTTTTATCAAATGGCTGAGAAAAGCAAAGTTTTGATTATTGGAGGAACAGGGTATATTGGTAAATTTGTAGTTGAAGCTAGTGCAAAATCTGGACACCCAACTTTTGCTTTAGTTAGAGAGACCACAGTTTCTGATCCTGATAAGGGCAAAATTGTTGAAAATTTCAAGAATTTGGGTGTCACTATTATTAAT...........................................................................................GGTGATTTGTATGATCATGAGAGTTTGCTGAAGGCTATAAAACAAGTGGATGTGGTGATATCAACTGTTGGTGCAATGCAATTGGCTGATCAAGTTAAGATTATTGATGCTATTAAAGAAGCTGGCAATATTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTCTTCCCTTCGGAGTTTGGTATGGATGTCGATAAGATCAATGCTGTGGAGCCAGCAAAGTCTACATTTGCTGTGAAAGTTCAAATCCGAAGAGCTATTGAGGCTGCAGAAATTCCCTATACTAATGTCTCATGTAACTATCTTGCTGGTTATTTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745293" ref_strand="+" ref_description="SGN-E745293 [GI|47105785]">
      <seq>aggcatgtggtattcactattctgccctaccaattactctgtggaaagccttcatttctcactcaatcgtcccttttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaactccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116480" stop="122894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116780" g_stop="117052" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="417" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="543" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121104" g_stop="121255" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="695" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121256" i_stop="122091" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122092" g_stop="122594" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="1198" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1199" polyA_stop="1217"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E745293" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1198</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116780" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="121104" e_stop="121255"/>
          <exon e_start="122092" e_stop="122594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAA</genome_strand>
        <mrna_strand>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAACTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246687" ref_strand="+" ref_description="SGN-E246687 [cLEF-45-I2]">
      <seq>tcaatcgtcccttttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116542" stop="121295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116842" g_stop="117052" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="355" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="120995" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="442" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E246687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116842" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="120995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAA</genome_strand>
        <mrna_strand>TCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728924" ref_strand="+" ref_description="SGN-E728924 [LA19BF06]">
      <seq>cttttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaagaagaagaaggaggaggtcaaaaatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgtcttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggacaaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgtgaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccacaattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116552" stop="122440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116852" g_stop="117052" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="344" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="470" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121104" g_stop="121255" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="622" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121256" i_stop="122091" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122092" g_stop="122140" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="671" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E728924" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116852" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="121104" e_stop="121255"/>
          <exon e_start="122092" e_stop="122140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAG</genome_strand>
        <mrna_strand>CTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCG-AAGAAGAAGAAGGAGGAGGTCAAAAATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGTCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGACAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACAATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267789" ref_strand="+" ref_description="SGN-E267789 [cLEI-12-J18]">
      <seq>tttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116554" stop="121427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116854" g_stop="117052" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="343" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="469" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121104" g_stop="121127" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="493" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E267789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116854" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="121104" e_stop="121127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCT</genome_strand>
        <mrna_strand>TTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271448" ref_strand="+" ref_description="SGN-E271448 [cLEM-5-N11]">
      <seq>acaaacaccttgactgcacagctctactgatcagaaagagggcgaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatgggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttgacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatatggaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116562" stop="121324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116862" g_stop="117052" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="335" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121024" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="451" r_length="116" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E271448" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116862" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAAT</genome_strand>
        <mrna_strand>ACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCGAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATGGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTGACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATATGGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311777" ref_strand="+" ref_description="SGN-E311777 [cLEZ-9-M20]">
      <seq>ttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116571" stop="121434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116871" g_stop="117052" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="326" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="452" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121104" g_stop="121134" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="483" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E311777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116871" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="121104" e_stop="121134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCAT</genome_strand>
        <mrna_strand>TTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314211" ref_strand="+" ref_description="SGN-E314211 [cTOA-21-K3]">
      <seq>tgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116576" stop="121512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116876" g_stop="117052" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="321" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="447" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121104" g_stop="121212" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="556" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E314211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116876" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="121104" e_stop="121212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGC</genome_strand>
        <mrna_strand>TGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314311" ref_strand="+" ref_description="SGN-E314311 [cTOA-21-K2]">
      <seq>tgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtgggcaaatcaaatataagtcaaaaggtgctgcccaccatcataaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116576" stop="121318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116876" g_stop="117052" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="321" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121019" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="432" r_length="111" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E314311" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116876" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGA</genome_strand>
        <mrna_strand>TGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGGCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731938" ref_strand="+" ref_description="SGN-E731938 [LA28CE04]">
      <seq>ctctactgatcagaaagagggctaaaccgaagaagaagaaggaggaggtcaaaaatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgtcttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggacaaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgtgaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccacaattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116583" stop="122611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116883" g_stop="117052" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="313" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="439" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121104" g_stop="121255" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="591" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121256" i_stop="122091" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122092" g_stop="122311" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="811" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E731938" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116883" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="121104" e_stop="121255"/>
          <exon e_start="122092" e_stop="122311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACAC</genome_strand>
        <mrna_strand>CTCTACTGATCAGAAAGAGGGCTAAACCG-AAGAAGAAGAAGGAGGAGGTCAAAAATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGTCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGACAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACAATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704357" ref_strand="+" ref_description="SGN-E704357 [FA24AC07]">
      <seq>cagaaagagggctaaaccgaagaagaagaaggaggaggtcaaaaatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgtcttcaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggacaaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgtgaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccacaattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116593" stop="122657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116893" g_stop="117052" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="303" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="429" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121104" g_stop="121255" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="581" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121256" i_stop="122091" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122092" g_stop="122357" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="847" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E704357" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116893" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="121104" e_stop="121255"/>
          <exon e_start="122092" e_stop="122357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGC</genome_strand>
        <mrna_strand>CAGAAAGAGGGCTAAACCG-AAGAAGAAGAAGGAGGAGGTCAAAAATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGTCTTCAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGACAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACAATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246351" ref_strand="+" ref_description="SGN-E246351 [cLEF-52-A12]">
      <seq>gagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcataaggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116594" stop="121487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116893" g_stop="117052" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="304" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="430" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69">
            <donor d_prob="0.887" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121104" g_stop="121187" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="514" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E246351" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116893" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="121104" e_stop="121187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATG</genome_strand>
        <mrna_strand>GAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAAGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344734" ref_strand="+" ref_description="SGN-E344734 [cTOF-21-O10]">
      <seq>agaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgcttcgtgtccatgcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116594" stop="122503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116894" g_stop="117052" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="303" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="429" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121104" g_stop="121255" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="581" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121256" i_stop="122091" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122092" g_stop="122203" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="694" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E344734" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116894" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="121104" e_stop="121255"/>
          <exon e_start="122092" e_stop="122203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGC-TCGTGTCCATGCAGCTG</genome_strand>
        <mrna_strand>AGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTTCGTGTCCATGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203932" ref_strand="+" ref_description="SGN-E203932 [cLEC-22-A23]">
      <seq>gggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116650" stop="122476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116950" g_stop="117052" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="247" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="373" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="122091" i_length="1057">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122092" g_stop="122176" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="458" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E203932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116950" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="122092" e_stop="122176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACT</genome_strand>
        <mrna_strand>GGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347370" ref_strand="+" ref_description="SGN-E347370 [cTOF-33-D10]">
      <seq>actccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116663" stop="122579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116963" g_stop="117052" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="234" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="360" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121104" g_stop="121255" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="512" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121256" i_stop="122091" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122092" g_stop="122279" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="700" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E347370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116963" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="121104" e_stop="121255"/>
          <exon e_start="122092" e_stop="122279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATA</genome_strand>
        <mrna_strand>ACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729708" ref_strand="+" ref_description="SGN-E729708 [LA21DD12]">
      <seq>caatcaaggtcttgatcgcgnnggaaatcgncttcaaggcagccctcacatagaggaacacctgtccaggcatcggactcttatgaacatatttgataaagctccagtggtggacaaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgtgaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccacaattatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcacctctctcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116696" stop="122707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116991" g_stop="117052" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.823"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="0.88"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="206" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="332" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69">
            <donor d_prob="0.887" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121104" g_stop="121255" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="484" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121256" i_stop="122091" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122092" g_stop="122407" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="800" r_length="316" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E729708" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116991" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="121104" e_stop="121255"/>
          <exon e_start="122092" e_stop="122407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTT</genome_strand>
        <mrna_strand>CAATCAAGGTCTTGATCGCGNNGGAAATCGNCTTCAAGGCAGCCCTCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACATATTTGATAAAGCTCCAGTGGTGGACAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACAATTATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCACCTCTCTCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370674" ref_strand="+" ref_description="SGN-E370674 [TUS-27-O16](-)">
      <seq>tcattggtatgggggccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcaggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctaactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="120849" stop="122987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121149" g_stop="121255" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121256" i_stop="122091" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122092" g_stop="122684" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="700" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E370674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121149" e_stop="121255"/>
          <exon e_start="122092" e_stop="122684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAAC</genome_strand>
        <mrna_strand>TCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349354" ref_strand="+" ref_description="SGN-E349354 [cTOS-1-G20]">
      <seq>ttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="121849" stop="122995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122149" g_stop="122704" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E349354" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122149" e_stop="122704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAA</genome_strand>
        <mrna_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350573" ref_strand="+" ref_description="SGN-E350573 [cTOS-5-J15]">
      <seq>ttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="121849" stop="122995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122149" g_stop="122704" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E350573" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122149" e_stop="122704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAA</genome_strand>
        <mrna_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354403" ref_strand="+" ref_description="SGN-E354403 [cTOS-17-I14]">
      <seq>ttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="121849" stop="122995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122149" g_stop="122704" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E354403" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122149" e_stop="122704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAA</genome_strand>
        <mrna_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352036" ref_strand="+" ref_description="SGN-E352036 [cTOS-13-B11]">
      <seq>ttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="121849" stop="122995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122149" g_stop="122703" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E352036" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122149" e_stop="122703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGA</genome_strand>
        <mrna_strand>TTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305866" ref_strand="+" ref_description="SGN-E305866 [cLEX-14-P10]">
      <seq>agcaaccaactactgttaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="121863" stop="122967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122163" g_stop="122667" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E305866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122163" e_stop="122667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATT</genome_strand>
        <mrna_strand>AGCAACCAACTACTGTTACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222070" ref_strand="+" ref_description="SGN-E222070 [cLEL-36-G10](-)">
      <seq>agatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="121940" stop="122987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122240" g_stop="122684" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="459"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E222070" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122240" e_stop="122684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAAC</genome_strand>
        <mrna_strand>AGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691550" ref_strand="+" ref_description="SGN-E691550 [LH_Ea06G12]">
      <seq>catttaaggaggaatatgattctatgattggtgttgtccgccctttacatcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgtccaatgagatcagtgcccatgcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaatagtcatggatattgactgttatccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttgtttcacagaaattcttcagcttggaaaaggaagttacgcccagaagtgcttgtaacttgagaaatcgttttcaatagattaatttggtatattgttattggaataacataaaacattgacagcacattcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="121968" stop="122987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122264" g_stop="122692" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E691550" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122264" e_stop="122692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCT</genome_strand>
        <mrna_strand>CATTTAAGGAGGAATATGATTCTATGATTGGTGTTGTCCGCCCTTTACATCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGTCCAATGAGATCAGTGCCCATGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAATAGTCATGGATATTGACTGTTATCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTGTTTCACAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCAGAAGTGCTTGTAACT-TGAGAAATCGTTTTCAATAGATTAATTTGGTATATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695390" ref_strand="+" ref_description="SGN-E695390 [LH_Ea06G12](-)">
      <seq>gtgatgaggaatatgattctatgattggtgttgtccgtgaaacaaaaaaaaagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgtccaatgagatcagtgcccatgcaactctctctttttttgctttccagagatttattttaccccgtgagcatctgtatggagaatagtcatggatattgactgttatccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttagggcttttgccccttgtttctcagtaattcttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="121967" stop="122868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122267" g_stop="122568" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E695390" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122267" e_stop="122568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAG</genome_strand>
        <mrna_strand>GTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACAAAAAAAAAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGTCCAATGAGATCAGTGCCCATGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACCCCGTGAGCATCTGTATGGAGAATAGTCATGGATATTGACTGTTATCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAGGGCTTTTGCCCCTTGTTTCTCAGTAATTCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334730" ref_strand="+" ref_description="SGN-E334730 [cTOE-3-G13]">
      <seq>ccacatgcactgtgcttacttagtcatggatctcaataatgcatggaatctcaaacaagaaggcattgctaaacataaatgcttcaactgatgaagaaatatgtttggaatgtgctgtcaatgttttatgttattccaataacaatttaccaaataaatctattgaaaatgatttctcagagttacaagcacttgtgggcgtaacttccttttccaagctgaagaatttctgggaaataaggggcaaaagtcttaactacaaagcagtgacgtaccgatgctatccaataagtttgatattatttggaagggtaacagccaatatccatgactgttctccatacagatgctcacggtgtaaaataaatctctggaaagcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="123087" stop="122102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122787" g_stop="122402" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-E334730" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122787" e_stop="122402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACATGCACTGTGCTTACTTAGTCATGGATCTCAATAATGCATGGAATCTCAAACAAGAAGGGCATTGCTAAACATAAATGCTTCAACTGATGAAGAAATATGTTTGGAATGTGCTGTCAATGTTTTATGTTATTCCAATAACAATTTACCAAATAAATCTATTGAAAATGATTTCTCAGAGTTACAAGCACTTGTGGGCGTAACTTCCTTTTCCAAGCTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAA</genome_strand>
        <mrna_strand>CCACATGCACTGTGCTTACTTAGTCATGGATCTCAATAATGCATGGAATCTCAAACAAGAA-GGCATTGCTAAACATAAATGCTTCAACTGATGAAGAAATATGTTTGGAATGTGCTGTCAATGTTTTATGTTATTCCAATAACAATTTACCAAATAAATCTATTGAAAATGATTTCTCAGAGTTACAAGCACTTGTGGGCGTAACTTCCTTTTCCAAGCTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267750" ref_strand="-" ref_description="SGN-E267750 [cLEI-12-L1]">
      <seq>agtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcatcagttgaagcatttatgtttagcaatgcccttcttgtttgagattccatgcattattgagatccatgactaagtaagcacagtgcatgtggggaaatcaatgacctaaagccaaggcatgttagctatagttatattaattataatattataaaggtagagatgattggctgattggggtatgaagagccaaaagatgagtaatttccccgtaaattcagccttgtcttattgtgtttttataatgacactgtatatgaatgattggcatctgttgaattgtttggttttgaatgtagtcatctttggtcaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="122154" stop="123311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122454" g_stop="123006" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="576"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E267750" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267750" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="122454" e_stop="123006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</genome_strand>
        <mrna_strand>AGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324696" ref_strand="+" ref_description="SGN-E324696 [cTOC-8-C16]">
      <seq>ttaatggtgaaaatcaaagtgaaagtgtgaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttgaagtatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccatattgaagactatagctggaggtagcgttgcaaatacaattagagggttggctgctggttttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctcactgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccatgtttgtctggctctgtgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="124643" stop="126980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124943" g_stop="125088" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125089" i_stop="126304" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126305" g_stop="126568" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="410" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126569" i_stop="126650" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126651" g_stop="126717" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="477" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E324696" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124943" e_stop="125088"/>
          <exon e_start="126305" e_stop="126568"/>
          <exon e_start="126651" e_stop="126717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAG</genome_strand>
        <mrna_strand>TTAATGGTGAAAATCAAAGTGAAAGTGTGAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAC..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284556" ref_strand="+" ref_description="SGN-E284556 [cLES-3-P5]">
      <seq>aaaatcaaagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttgaagtatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccatattgaagactatagctggaggtagcgttgcaaatacaattagagggttggctgctggttttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="124652" stop="126866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124952" g_stop="125088" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125089" i_stop="126304" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126305" g_stop="126566" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="399" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E284556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124952" e_stop="125088"/>
          <exon e_start="126305" e_stop="126566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTC</genome_strand>
        <mrna_strand>AAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341193" ref_strand="+" ref_description="SGN-E341193 [cTOE-22-C15]">
      <seq>tcaaagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttgaagtatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccatattgaagactatagctggaggtagcgttgcaaatacaattagagggttggctgctggttttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="124656" stop="126980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124956" g_stop="125088" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125089" i_stop="126304" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126305" g_stop="126568" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="397" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126569" i_stop="126650" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126651" g_stop="126691" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="438" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-E341193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124956" e_stop="125088"/>
          <exon e_start="126305" e_stop="126568"/>
          <exon e_start="126651" e_stop="126691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCG</genome_strand>
        <mrna_strand>TCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>138</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6014" PGL_stop="1185"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6014" e_stop="5679"/>
            <exon e_start="4597" e_stop="4521"/>
            <exon e_start="4433" e_stop="4350"/>
            <exon e_start="4248" e_stop="4135"/>
            <exon e_start="3816" e_stop="3730"/>
            <exon e_start="3514" e_stop="3375"/>
            <exon e_start="3281" e_stop="3194"/>
            <exon e_start="2992" e_stop="2916"/>
            <exon e_start="1670" e_stop="1552"/>
            <exon e_start="1253" e_stop="1185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.844" acc_prob="0.743" e_score="0.961"/>
          <exon-intron don_prob="0.959" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.157" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.446" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="6014" e_stop="5679" e_length="336"/>
          </exon>
          <intron i_serial="1" don_prob="0.844" acc_prob="0.743">
            <gDNA_intron_boundary i_start="5678" i_stop="4598" i_length="1081"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4597" e_stop="4521" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.942">
            <gDNA_intron_boundary i_start="4520" i_stop="4434" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4433" e_stop="4350" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4349" i_stop="4249" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4248" e_stop="4135" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.977">
            <gDNA_intron_boundary i_start="4134" i_stop="3817" i_length="318"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3816" e_stop="3730" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3729" i_stop="3515" i_length="215"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3514" e_stop="3375" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.157" acc_prob="0.994">
            <gDNA_intron_boundary i_start="3374" i_stop="3282" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3281" e_stop="3194" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.446" acc_prob="0.932">
            <gDNA_intron_boundary i_start="3193" i_stop="2993" i_length="201"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2992" e_stop="2916" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.975">
            <gDNA_intron_boundary i_start="2915" i_stop="1671" i_length="1245"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="1670" e_stop="1552" e_length="119"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1551" i_stop="1254" i_length="298"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="1253" e_stop="1185" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6014" stop="5679"/>
              <exon start="4597" stop="4521"/>
              <exon start="4433" stop="4350"/>
              <exon start="4248" stop="4243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5944" stop="5679"/>
              <exon start="4597" stop="4521"/>
              <exon start="4433" stop="4350"/>
              <exon start="4248" stop="4135"/>
              <exon start="3816" stop="3730"/>
              <exon start="3514" stop="3392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5943" stop="5679"/>
              <exon start="4597" stop="4521"/>
              <exon start="4433" stop="4350"/>
              <exon start="4248" stop="4135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5897" stop="5679"/>
              <exon start="4597" stop="4521"/>
              <exon start="4433" stop="4350"/>
              <exon start="4248" stop="4135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4206" stop="4135"/>
              <exon start="3816" stop="3730"/>
              <exon start="3514" stop="3375"/>
              <exon start="3281" stop="3194"/>
              <exon start="2992" stop="2916"/>
              <exon start="1670" stop="1552"/>
              <exon start="1253" stop="1185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3513" stop="3375"/>
              <exon start="3281" stop="3194"/>
              <exon start="2992" stop="2916"/>
              <exon start="1670" stop="1625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATAATAAAATCAGTATAAATAATTTTGTAAGTTAGGTAGCTTGAATGATTTTGGGTTCTTGATAAAAAAACAAATCTAAAAAGTTTAAAGTTCCAAAAAAAAAAAATCAAATCTTTTTCCAAGTTTTCAAATTTTCTTTGAACTTGGGGAAAAGAAAATGGCAGATGTGCCTTGTTGTGGAACAGAATTTTTTGTGTTTATTTTGGTTATTATAGGATTGGTGTTGTTTGCTGGTTTGATGGCTGGTCTTACACTTGGTCTTATGTCTCTTGGACTTGTCGACCTTGAAGTTCTCAGCAAATCTGGTCGTCCACAAGATCGTAGTCATGCCT : CTAAAATACTTCCAGTCGTAAAAAACCAACACCTTTTGCTTTGCACACTCTTGATCGGCAACTCTTTAGCAATGGAG : TCTCTTCCAATTTTCTTGGACAAGCTTGTACCTTCATGGGCAGCTGTACTGGTATCTGTGACACTGATTCTCATGTTTGGAGAG : ATAATTCCTCAAGCAATCTGTACTCGCTATGGATTGACTGTTGGAGCTACTGTGGCACCCCTTGTTCAGCTTCTTCTCTGGTTATTCTTCCCCATTGCTTATCCAATTAGTAAG : GTCTTGGATTGGATGTTAGGTAAGGGGCACGCTGCCCTTCTGCGAAGAGCTGAGCTCAAAACTTTTGTGGATTTCCATGGCAATGAG : GCTGGAAAAGGAGGGGATTTGACACATGATGAAACAACAATAATTGCTGGAGCACTGGAGTTGACAGAAAAAACTGCAAAAGATGCGATGACTCCAATATCAAAGGCTTTTTCTCTTGATCTGGATGGAACACTTAACTT : GGAAACACTAAATGCTATAATGACAATGGGGCATAGCAGAGTTCCTGTTTACTACAGAAAGTCGACAAATATTATAGGACTAATTTTG : GTTAAAAATCTTTTGGCGGTTCACTCAGAAGAAAATTCAGTTCCCCTGAGGAAAATGTTGATAAGAAAAATTCCGAG : GGTTTCTGAAAACATGCCTCTGTATGACATTTTGAATGAGTTTCAGAAGGGCCATAGCCACATCGCTGTTGTATATAAAGATCTGAACGAGACGAAAGATATGCCAGTGAATGATAAAG : ATGCTGATAGCACAACACCAAAATCTAACTCGCATGACATTAAGACTGCATTACATAAGGCTGATGATG</gDNA_template>
            <first_frame> K  N  N  K  I  S  I  N  N  F  V  S  *  V  A  *  M  I  L  G  S  *  *  K  N  K  S  K  K  F  K  V  P  K  K  K  N  Q  I  F  F  Q  V  F  K  F  S  L  N  L  G  K  R  K  W  Q  M  C  L  V  V  E  Q  N  F  L  C  L  F  W  L  L  *  D  W  C  C  L  L  V  *  W  L  V  L  H  L  V  L  C  L  L  D  L  S  T  L  K  F  S  A  N  L  V  V  H  K  I  V  V  M  P  :  L  K  Y  F  Q  S  *  K  T  N  T  F  C  F  A  H  S  *  S  A  T  L  *  Q  W  S :   L  F  Q  F  S  W  T  S  L  Y  L  H  G  Q  L  Y  W  Y  L  *  H  *  F  S  C  L  E  R :   *  F  L  K  Q  S  V  L  A  M  D  *  L  L  E  L  L  W  H  P  L  F  S  F  F  S  G  Y  S  S  P  L  L  I  Q  L  V  R :   S  W  I  G  C  *  V  R  G  T  L  P  F  C  E  E  L  S  S  K  L  L  W  I  S  M  A  M  R :   L  E  K  E  G  I  *  H  M  M  K  Q  Q  *  L  L  E  H  W  S  *  Q  K  K  L  Q  K  M  R  *  L  Q  Y  Q  R  L  F  L  L  I  W  M  E  H  L  T   : W  K  H  *  M  L  *  *  Q  W  G  I  A  E  F  L  F  T  T  E  S  R  Q  I  L  *  D  *  F  W :   L  K  I  F  W  R  F  T  Q  K  K  I  Q  F  P  *  G  K  C  *  *  E  K  F  R   : G  F  L  K  T  C  L  C  M  T  F  *  M  S  F  R  R  A  I  A  T  S  L  L  Y  I  K  I  *  T  R  R  K  I  C  Q  *  M  I  K  :  M  L  I  A  Q  H  Q  N  L  T  R  M  T  L  R  L  H  Y  I  R  L  M  M </first_frame>
            <second_frame>  K  I  I  K  S  V  *  I  I  L  *  V  R  *  L  E  *  F  W  V  L  D  K  K  T  N  L  K  S  L  K  F  Q  K  K  K  I  K  S  F  S  K  F  S  N  F  L  *  T  W  G  K  E  N  G  R  C  A  L  L  W  N  R  I  F  C  V  Y  F  G  Y  Y  R  I  G  V  V  C  W  F  D  G  W  S  Y  T  W  S  Y  V  S  W  T  C  R  P  *  S  S  Q  Q  I  W  S  S  T  R  S  *  S  C  L :   *  N  T  S  S  R  K  K  P  T  P  F  A  L  H  T  L  D  R  Q  L  F  S  N  G   : V  S  S  N  F  L  G  Q  A  C  T  F  M  G  S  C  T  G  I  C  D  T  D  S  H  V  W  R   : D  N  S  S  S  N  L  Y  S  L  W  I  D  C  W  S  Y  C  G  T  P  C  S  A  S  S  L  V  I  L  P  H  C  L  S  N  *  *   : G  L  G  L  D  V  R  *  G  A  R  C  P  S  A  K  S  *  A  Q  N  F  C  G  F  P  W  Q  *   : G  W  K  R  R  G  F  D  T  *  *  N  N  N  N  C  W  S  T  G  V  D  R  K  N  C  K  R  C  D  D  S  N  I  K  G  F  F  S  *  S  G  W  N  T  *  L  :  G  N  T  K  C  Y  N  D  N  G  A  *  Q  S  S  C  L  L  Q  K  V  D  K  Y  Y  R  T  N  F   : G  *  K  S  F  G  G  S  L  R  R  K  F  S  S  P  E  E  N  V  D  K  K  N  S  E  :  G  F  *  K  H  A  S  V  *  H  F  E  *  V  S  E  G  P  *  P  H  R  C  C  I  *  R  S  E  R  D  E  R  Y  A  S  E  *  *  R :   C  *  *  H  N  T  K  I  *  L  A  *  H  *  D  C  I  T  *  G  *  *   </second_frame>
            <third_frame>   K  *  *  N  Q  Y  K  *  F  C  K  L  G  S  L  N  D  F  G  F  L  I  K  K  Q  I  *  K  V  *  S  S  K  K  K  K  S  N  L  F  P  S  F  Q  I  F  F  E  L  G  E  K  K  M  A  D  V  P  C  C  G  T  E  F  F  V  F  I  L  V  I  I  G  L  V  L  F  A  G  L  M  A  G  L  T  L  G  L  M  S  L  G  L  V  D  L  E  V  L  S  K  S  G  R  P  Q  D  R  S  H  A   : S  K  I  L  P  V  V  K  N  Q  H  L  L  L  C  T  L  L  I  G  N  S  L  A  M  E  :  S  L  P  I  F  L  D  K  L  V  P  S  W  A  A  V  L  V  S  V  T  L  I  L  M  F  G  E  :  I  I  P  Q  A  I  C  T  R  Y  G  L  T  V  G  A  T  V  A  P  L  V  Q  L  L  L  W  L  F  F  P  I  A  Y  P  I  S  K  :  V  L  D  W  M  L  G  K  G  H  A  A  L  L  R  R  A  E  L  K  T  F  V  D  F  H  G  N  E  :  A  G  K  G  G  D  L  T  H  D  E  T  T  I  I  A  G  A  L  E  L  T  E  K  T  A  K  D  A  M  T  P  I  S  K  A  F  S  L  D  L  D  G  T  L  N  L :   E  T  L  N  A  I  M  T  M  G  H  S  R  V  P  V  Y  Y  R  K  S  T  N  I  I  G  L  I  L  :  V  K  N  L  L  A  V  H  S  E  E  N  S  V  P  L  R  K  M  L  I  R  K  I  P  R :   V  S  E  N  M  P  L  Y  D  I  L  N  E  F  Q  K  G  H  S  H  I  A  V  V  Y  K  D  L  N  E  T  K  D  M  P  V  N  D  K   : D  A  D  S  T  T  P  K  S  N  S  H  D  I  K  T  A  L  H  K  A  D  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5922" stop="5679"/>
                    <exon start="4597" stop="4521"/>
                    <exon start="4433" stop="4350"/>
                    <exon start="4248" stop="4135"/>
                    <exon start="3816" stop="3730"/>
                    <exon start="3514" stop="3375"/>
                    <exon start="3281" stop="3194"/>
                    <exon start="2992" stop="2916"/>
                    <exon start="1670" stop="1552"/>
                    <exon start="1253" stop="1186"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSKKKKSNLFPSFQIFFELGEKKMADVPCCGTEFFVFILVIIGLVLFAGLMAGLTLGLMSLGLVDLEVLSKSGRPQDRSHASKILPVVKNQHLLLCTLLIGNSLAMESLPIFLDKLVPSWAAVLVSVTLILMFGEIIPQAICTRYGLTVGATVAPLVQLLLWLFFPIAYPISKVLDWMLGKGHAALLRRAELKTFVDFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDGTLNLETLNAIMTMGHSRVPVYYRKSTNIIGLILVKNLLAVHSEENSVPLRKMLIRKIPRVSENMPLYDILNEFQKGHSHIAVVYKDLNETKDMPVNDKDADSTTPKSNSHDIKTALHKADD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11250" PGL_stop="8650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11250" e_stop="10980"/>
            <exon e_start="10833" e_stop="10211"/>
            <exon e_start="9991" e_stop="9899"/>
            <exon e_start="9779" e_stop="9619"/>
            <exon e_start="8943" e_stop="8650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.170" e_score="0.996"/>
          <exon-intron don_prob="0.931" acc_prob="0.636" e_score="0.998"/>
          <exon-intron don_prob="0.671" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.786" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="11250" e_stop="10980" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.170">
            <gDNA_intron_boundary i_start="10979" i_stop="10834" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="10833" e_stop="10211" e_length="623"/>
          </exon>
          <intron i_serial="2" don_prob="0.931" acc_prob="0.636">
            <gDNA_intron_boundary i_start="10210" i_stop="9992" i_length="219"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9991" e_stop="9899" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.671" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9898" i_stop="9780" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9779" e_stop="9619" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.786" acc_prob="0.911">
            <gDNA_intron_boundary i_start="9618" i_stop="8944" i_length="675"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="8943" e_stop="8650" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11250" stop="10980"/>
              <exon start="10833" stop="10370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11250" stop="10980"/>
              <exon start="10833" stop="10668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10669" stop="10449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10383" stop="10211"/>
              <exon start="9991" stop="9899"/>
              <exon start="9779" stop="9619"/>
              <exon start="8943" stop="8650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAAGCAAATACAACCTACAACATGGGGTTCCATCTGGGTGAGTTTGAAGTGACCTGGGCAAGTTGCGCAACTCGTTGAACAAATTTAGTGGGTCATGCAACAACCCGAAATGTGCATCTGGGTCACCAATTTGAGAAAGTTTAACATCAGAAAATCCTAGTGATGGCAATAACTCATCAGGATAGTCGCTATAGAAATGGAAATTTGAGCTGGACATTGTGGTTGATTGCTTGTTCATGAAGTCCGCTAAGAGTACTGTATGAGCAGAG : GTCCGCTGCCACTCTGTTCAATGATTTTGCCATCATTAGTTGGTGCTTTTGTTCATCTGTTGTTTCTGCTGCTGCCTCTACAATAGTGGTTTTCATCTGCAAGACCTCTGGAAAATCAACCTCAAATATGTTGCTGTCTTTCAAGCAACTCAAGCGATATGCCCTTGTATCCATACCTGCAGATAAAGAACAGACATCATTTGTTTACTCTGTAACATTTTTTGCTAAATGGAATCAACTAGCTTCCGAGGGGTGAGCAATAAAAATGCTAGGTGAAATATGAGGAGTCTCTTGTGGTGGACAATCTATGTCCATTCAGTGTTCAATCTCCATGTTGAGCCCATAACTCAGAGGAATTAAATTACATTCCGCTTATCATCTTTTATCCAAACATAGTCATAGTTGCTCCTAAATGGAACGACTGTGTTTTCACTGAAAGACTATATGTCACTTCACAACATCAGCATGTTGCAGTTGATGGCTAGTATTTTGGGGATTCAAATCTGGAATATTGTTGCATCCTGGTAATGTTTAGTTTGGTATATGTATCTAGGGAGATGAAAACCTTTGCAGAATACAAAAACTAAGCCTCAGTCCCACACAAGTTGGGGTCGCATAAACGG : TGTCACAGGGTATATACAGCACAAGAGATCATTTGGGAACATCACCTACCTGCTCCAAGAATGACAACTTGTGCTCCTCCGCCATCAAAAGAA : GTACGTCTCCCCTGCAAGTAACTCAGCTAGTGGATCATGGATCACATGTTTCCATAGCGCCCTTCCAGCTGCAGTTTGACATGCTGATTGTCTCAAAGAATCCCAATCATGTTCGACAGCTGAATGAACTTCTCTGATGGTTTCAGTGTACAAAGAATCAG : GTATGGATAGTAAACCAACTTGCAAACGGGTAAAGGAGTAACTCGCCCCCATTTCACTCCGTCATCTCTATACTCGTCTTATCGAATCATCAGTTTTGGTACCAATTATCATTGTGATATTTTGTTCATGCACCTAACACCATCATCAAAGAGGAGGTACATCTCAACAACTGGCACATCCACATCCACTACCTTAATTATGGCTCAATTATATATCTATCTATACATATATTATATGTGTGTGTATATATTAAACACATATTTATATTATTAACCATAGGCCTAGGAAGTCAG</gDNA_template>
            <first_frame> L  K  Q  I  Q  P  T  T  W  G  S  I  W  V  S  L  K  *  P  G  Q  V  A  Q  L  V  E  Q  I  *  W  V  M  Q  Q  P  E  M  C  I  W  V  T  N  L  R  K  F  N  I  R  K  S  *  *  W  Q  *  L  I  R  I  V  A  I  E  M  E  I  *  A  G  H  C  G  *  L  L  V  H  E  V  R  *  E  Y  C  M  S  R   : G  P  L  P  L  C  S  M  I  L  P  S  L  V  G  A  F  V  H  L  L  F  L  L  L  P  L  Q  *  W  F  S  S  A  R  P  L  E  N  Q  P  Q  I  C  C  C  L  S  S  N  S  S  D  M  P  L  Y  P  Y  L  Q  I  K  N  R  H  H  L  F  T  L  *  H  F  L  L  N  G  I  N  *  L  P  R  G  E  Q  *  K  C  *  V  K  Y  E  E  S  L  V  V  D  N  L  C  P  F  S  V  Q  S  P  C  *  A  H  N  S  E  E  L  N  Y  I  P  L  I  I  F  Y  P  N  I  V  I  V  A  P  K  W  N  D  C  V  F  T  E  R  L  Y  V  T  S  Q  H  Q  H  V  A  V  D  G  *  Y  F  G  D  S  N  L  E  Y  C  C  I  L  V  M  F  S  L  V  Y  V  S  R  E  M  K  T  F  A  E  Y  K  N  *  A  S  V  P  H  K  L  G  S  H  K  R  :  C  H  R  V  Y  T  A  Q  E  I  I  W  E  H  H  L  P  A  P  R  M  T  T  C  A  P  P  P  S  K  E  :  V  R  L  P  C  K  *  L  S  *  W  I  M  D  H  M  F  P  *  R  P  S  S  C  S  L  T  C  *  L  S  Q  R  I  P  I  M  F  D  S  *  M  N  F  S  D  G  F  S  V  Q  R  I  R :   Y  G  *  *  T  N  L  Q  T  G  K  G  V  T  R  P  H  F  T  P  S  S  L  Y  S  S  Y  R  I  I  S  F  G  T  N  Y  H  C  D  I  L  F  M  H  L  T  P  S  S  K  R  R  Y  I  S  T  T  G  T  S  T  S  T  T  L  I  M  A  Q  L  Y  I  Y  L  Y  I  Y  Y  M  C  V  Y  I  L  N  T  Y  L  Y  Y  *  P  *  A  *  E  V   </first_frame>
            <second_frame>  *  S  K  Y  N  L  Q  H  G  V  P  S  G  *  V  *  S  D  L  G  K  L  R  N  S  L  N  K  F  S  G  S  C  N  N  P  K  C  A  S  G  S  P  I  *  E  S  L  T  S  E  N  P  S  D  G  N  N  S  S  G  *  S  L  *  K  W  K  F  E  L  D  I  V  V  D  C  L  F  M  K  S  A  K  S  T  V  *  A  E  :  V  R  C  H  S  V  Q  *  F  C  H  H  *  L  V  L  L  F  I  C  C  F  C  C  C  L  Y  N  S  G  F  H  L  Q  D  L  W  K  I  N  L  K  Y  V  A  V  F  Q  A  T  Q  A  I  C  P  C  I  H  T  C  R  *  R  T  D  I  I  C  L  L  C  N  I  F  C  *  M  E  S  T  S  F  R  G  V  S  N  K  N  A  R  *  N  M  R  S  L  L  W  W  T  I  Y  V  H  S  V  F  N  L  H  V  E  P  I  T  Q  R  N  *  I  T  F  R  L  S  S  F  I  Q  T  *  S  *  L  L  L  N  G  T  T  V  F  S  L  K  D  Y  M  S  L  H  N  I  S  M  L  Q  L  M  A  S  I  L  G  I  Q  I  W  N  I  V  A  S  W  *  C  L  V  W  Y  M  Y  L  G  R  *  K  P  L  Q  N  T  K  T  K  P  Q  S  H  T  S  W  G  R  I  N  G :   V  T  G  Y  I  Q  H  K  R  S  F  G  N  I  T  Y  L  L  Q  E  *  Q  L  V  L  L  R  H  Q  K  K :   Y  V  S  P  A  S  N  S  A  S  G  S  W  I  T  C  F  H  S  A  L  P  A  A  V  *  H  A  D  C  L  K  E  S  Q  S  C  S  T  A  E  *  T  S  L  M  V  S  V  Y  K  E  S   : G  M  D  S  K  P  T  C  K  R  V  K  E  *  L  A  P  I  S  L  R  H  L  Y  T  R  L  I  E  S  S  V  L  V  P  I  I  I  V  I  F  C  S  C  T  *  H  H  H  Q  R  G  G  T  S  Q  Q  L  A  H  P  H  P  L  P  *  L  W  L  N  Y  I  S  I  Y  T  Y  I  I  C  V  C  I  Y  *  T  H  I  Y  I  I  N  H  R  P  R  K  S  </second_frame>
            <third_frame>   E  A  N  T  T  Y  N  M  G  F  H  L  G  E  F  E  V  T  W  A  S  C  A  T  R  *  T  N  L  V  G  H  A  T  T  R  N  V  H  L  G  H  Q  F  E  K  V  *  H  Q  K  I  L  V  M  A  I  T  H  Q  D  S  R  Y  R  N  G  N  L  S  W  T  L  W  L  I  A  C  S  *  S  P  L  R  V  L  Y  E  Q  R :   S  A  A  T  L  F  N  D  F  A  I  I  S  W  C  F  C  S  S  V  V  S  A  A  A  S  T  I  V  V  F  I  C  K  T  S  G  K  S  T  S  N  M  L  L  S  F  K  Q  L  K  R  Y  A  L  V  S  I  P  A  D  K  E  Q  T  S  F  V  Y  S  V  T  F  F  A  K  W  N  Q  L  A  S  E  G  *  A  I  K  M  L  G  E  I  *  G  V  S  C  G  G  Q  S  M  S  I  Q  C  S  I  S  M  L  S  P  *  L  R  G  I  K  L  H  S  A  Y  H  L  L  S  K  H  S  H  S  C  S  *  M  E  R  L  C  F  H  *  K  T  I  C  H  F  T  T  S  A  C  C  S  *  W  L  V  F  W  G  F  K  S  G  I  L  L  H  P  G  N  V  *  F  G  I  C  I  *  G  D  E  N  L  C  R  I  Q  K  L  S  L  S  P  T  Q  V  G  V  A  *  T   : V  S  Q  G  I  Y  S  T  R  D  H  L  G  T  S  P  T  C  S  K  N  D  N  L  C  S  S  A  I  K  R   : S  T  S  P  L  Q  V  T  Q  L  V  D  H  G  S  H  V  S  I  A  P  F  Q  L  Q  F  D  M  L  I  V  S  K  N  P  N  H  V  R  Q  L  N  E  L  L  *  W  F  Q  C  T  K  N  Q  :  V  W  I  V  N  Q  L  A  N  G  *  R  S  N  S  P  P  F  H  S  V  I  S  I  L  V  L  S  N  H  Q  F  W  Y  Q  L  S  L  *  Y  F  V  H  A  P  N  T  I  I  K  E  E  V  H  L  N  N  W  H  I  H  I  H  Y  L  N  Y  G  S  I  I  Y  L  S  I  H  I  L  Y  V  C  V  Y  I  K  H  I  F  I  L  L  T  I  G  L  G  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11008" stop="10980"/>
                    <exon start="10833" stop="10578"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPLRVLYEQRSAATLFNDFAIISWCFCSSVVSAAASTIVVFICKTSGKSTSNMLLSFKQLKRYALVSIPADKEQTSFVYSVTFFAKWNQLASEG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8930" stop="8670"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNLQTGKGVTRPHFTPSSLYSSYRIISFGTNYHCDILFMHLTPSSKRRYISTTGTSTSTTLIMAQLYIYLYIYYMCVYILNTYLYY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10214" stop="10211"/>
                    <exon start="9991" stop="9899"/>
                    <exon start="9779" stop="9643"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVSQGIYSTRDHLGTSPTCSKNDNLCSSAIKRSTSPLQVTQLVDHGSHVSIAPFQLQFDMLIVSKNPNHVRQLNELL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="9576" PGL_stop="11346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9576" e_stop="9942"/>
            <exon e_start="10658" e_stop="11346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9576" e_stop="9942" e_length="367"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9943" i_stop="10657" i_length="715"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="10658" e_stop="11346" e_length="689"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9576" stop="9942"/>
              <exon start="10658" stop="11022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10764" stop="11346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733419" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTCTAATCAAGAAAATGGTAGCTTGCCTGATTTTATACTACCTGATTCTTTGTACACTGAAACCATCAGAGAAGTTCATTCAGCTGTCGAACATGATTGGGATTCTTTGAGACAATCAGCATGTCAAACTGCAGCTGGAAGGGCGCTATGGAAACATGTGATCCATGATCCACTAGCTGAGTTACTTGCAGGGGAGACGTACCTGAAAAAATTGTATGAGAAGATTAAGAAAGATATCCTCAACAATGCTAAAGAGATTTCTGGAGTTATCATTGCAGTAAGGACACTATGGTTTGATAAGGGAATTGAAGCAGCTCTTACTTCTTTTGATGGCGGAGGAGCACAAGTTGTCATTCTTGGAGCAG : GTATGGATACAAGGGCATATCGCTTGAGTTGCTTGAAAGACAGCAACATATTTGAGGTTGATTTTCCAGAGGTCTTGCAGATGAAAACCACTATTGTAGAGGCAGCAGCAGAAACAACAGATGAACAAAAGCACCAACTAATGATGGCAAAATCATTGAACAGAGTGGCAGCGGACCTGAGAGAAAAGAACTGGCTTGAAAAGCTTCAAGAATCAGGCTTAACTCTAAATACGAATACAGTGTGGGTATTAGAGGGAATTCTCTACTATCTTTCTCACTCAAATGCAATGGAAGTACTAAAGATTATAGCAAATAACTGTACCTCTGCTCATACAGTACTCTTAGCGGACTTCATGAACAAGCAATCAACCACAATGTCCAGCTCAAATTTCCATTTCTATAGCGACTATCCTGATGAGTTATTGCCATCACTAGGATTTTCTGATGTTAAACTTTCTCAAATTGGTGACCCAGATGCACATTTCGGGTTGTTGCATGACCCACTAAATTTGTTCAACGAGTTGCGCAACTTGCCCAGGTCACTTCAAACTCACCCAGATGGAACCCCATGTTGTAGGTTGTATTTGCTTCAGGCTTCTGGAGAACCACCAAACAAGACTATTTTGTGAATATTATAAGAATGGTTCACCAATAAAGTCTAACTTGCTGTTAGAGCTTAGAAGCACCTA</gDNA_template>
            <first_frame> M  S  N  Q  E  N  G  S  L  P  D  F  I  L  P  D  S  L  Y  T  E  T  I  R  E  V  H  S  A  V  E  H  D  W  D  S  L  R  Q  S  A  C  Q  T  A  A  G  R  A  L  W  K  H  V  I  H  D  P  L  A  E  L  L  A  G  E  T  Y  L  K  K  L  Y  E  K  I  K  K  D  I  L  N  N  A  K  E  I  S  G  V  I  I  A  V  R  T  L  W  F  D  K  G  I  E  A  A  L  T  S  F  D  G  G  G  A  Q  V  V  I  L  G  A   : G  M  D  T  R  A  Y  R  L  S  C  L  K  D  S  N  I  F  E  V  D  F  P  E  V  L  Q  M  K  T  T  I  V  E  A  A  A  E  T  T  D  E  Q  K  H  Q  L  M  M  A  K  S  L  N  R  V  A  A  D  L  R  E  K  N  W  L  E  K  L  Q  E  S  G  L  T  L  N  T  N  T  V  W  V  L  E  G  I  L  Y  Y  L  S  H  S  N  A  M  E  V  L  K  I  I  A  N  N  C  T  S  A  H  T  V  L  L  A  D  F  M  N  K  Q  S  T  T  M  S  S  S  N  F  H  F  Y  S  D  Y  P  D  E  L  L  P  S  L  G  F  S  D  V  K  L  S  Q  I  G  D  P  D  A  H  F  G  L  L  H  D  P  L  N  L  F  N  E  L  R  N  L  P  R  S  L  Q  T  H  P  D  G  T  P  C  C  R  L  Y  L  L  Q  A  S  G  E  P  P  N  K  T  I  L  *  I  L  *  E  W  F  T  N  K  V  *  L  A  V  R  A  *  K  H  L </first_frame>
            <second_frame>  C  L  I  K  K  M  V  A  C  L  I  L  Y  Y  L  I  L  C  T  L  K  P  S  E  K  F  I  Q  L  S  N  M  I  G  I  L  *  D  N  Q  H  V  K  L  Q  L  E  G  R  Y  G  N  M  *  S  M  I  H  *  L  S  Y  L  Q  G  R  R  T  *  K  N  C  M  R  R  L  R  K  I  S  S  T  M  L  K  R  F  L  E  L  S  L  Q  *  G  H  Y  G  L  I  R  E  L  K  Q  L  L  L  L  L  M  A  E  E  H  K  L  S  F  L  E  Q  :  V  W  I  Q  G  H  I  A  *  V  A  *  K  T  A  T  Y  L  R  L  I  F  Q  R  S  C  R  *  K  P  L  L  *  R  Q  Q  Q  K  Q  Q  M  N  K  S  T  N  *  *  W  Q  N  H  *  T  E  W  Q  R  T  *  E  K  R  T  G  L  K  S  F  K  N  Q  A  *  L  *  I  R  I  Q  C  G  Y  *  R  E  F  S  T  I  F  L  T  Q  M  Q  W  K  Y  *  R  L  *  Q  I  T  V  P  L  L  I  Q  Y  S  *  R  T  S  *  T  S  N  Q  P  Q  C  P  A  Q  I  S  I  S  I  A  T  I  L  M  S  Y  C  H  H  *  D  F  L  M  L  N  F  L  K  L  V  T  Q  M  H  I  S  G  C  C  M  T  H  *  I  C  S  T  S  C  A  T  C  P  G  H  F  K  L  T  Q  M  E  P  H  V  V  G  C  I  C  F  R  L  L  E  N  H  Q  T  R  L  F  C  E  Y  Y  K  N  G  S  P  I  K  S  N  L  L  L  E  L  R  S  T   </second_frame>
            <third_frame>   V  *  S  R  K  W  *  L  A  *  F  Y  T  T  *  F  F  V  H  *  N  H  Q  R  S  S  F  S  C  R  T  *  L  G  F  F  E  T  I  S  M  S  N  C  S  W  K  G  A  M  E  T  C  D  P  *  S  T  S  *  V  T  C  R  G  D  V  P  E  K  I  V  *  E  D  *  E  R  Y  P  Q  Q  C  *  R  D  F  W  S  Y  H  C  S  K  D  T  M  V  *  *  G  N  *  S  S  S  Y  F  F  *  W  R  R  S  T  S  C  H  S  W  S  R :   Y  G  Y  K  G  I  S  L  E  L  L  E  R  Q  Q  H  I  *  G  *  F  S  R  G  L  A  D  E  N  H  Y  C  R  G  S  S  R  N  N  R  *  T  K  A  P  T  N  D  G  K  I  I  E  Q  S  G  S  G  P  E  R  K  E  L  A  *  K  A  S  R  I  R  L  N  S  K  Y  E  Y  S  V  G  I  R  G  N  S  L  L  S  F  S  L  K  C  N  G  S  T  K  D  Y  S  K  *  L  Y  L  C  S  Y  S  T  L  S  G  L  H  E  Q  A  I  N  H  N  V  Q  L  K  F  P  F  L  *  R  L  S  *  *  V  I  A  I  T  R  I  F  *  C  *  T  F  S  N  W  *  P  R  C  T  F  R  V  V  A  *  P  T  K  F  V  Q  R  V  A  Q  L  A  Q  V  T  S  N  S  P  R  W  N  P  M  L  *  V  V  F  A  S  G  F  W  R  T  T  K  Q  D  Y  F  V  N  I  I  R  M  V  H  Q  *  S  L  T  C  C  *  S  L  E  A  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9576" stop="9942"/>
                    <exon start="10658" stop="11286"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSNQENGSLPDFILPDSLYTETIREVHSAVEHDWDSLRQSACQTAAGRALWKHVIHDPLAELLAGETYLKKLYEKIKKDILNNAKEISGVIIAVRTLWFDKGIEAALTSFDGGGAQVVILGAGMDTRAYRLSCLKDSNIFEVDFPEVLQMKTTIVEAAAETTDEQKHQLMMAKSLNRVAADLREKNWLEKLQESGLTLNTNTVWVLEGILYYLSHSNAMEVLKIIANNCTSAHTVLLADFMNKQSTTMSSSNFHFYSDYPDELLPSLGFSDVKLSQIGDPDAHFGLLHDPLNLFNELRNLPRSLQTHPDGTPCCRLYLLQASGEPPNKTIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14617" PGL_stop="12453"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14617" e_stop="14396"/>
            <exon e_start="14312" e_stop="14205"/>
            <exon e_start="14110" e_stop="13980"/>
            <exon e_start="13363" e_stop="13263"/>
            <exon e_start="12807" e_stop="12748"/>
            <exon e_start="12556" e_stop="12453"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.925" e_score="0.995"/>
          <exon-intron don_prob="0.914" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="14617" e_stop="14396" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.925">
            <gDNA_intron_boundary i_start="14395" i_stop="14313" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14312" e_stop="14205" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.914" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14204" i_stop="14111" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14110" e_stop="13980" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.979">
            <gDNA_intron_boundary i_start="13979" i_stop="13364" i_length="616"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13363" e_stop="13263" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13262" i_stop="12808" i_length="455"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12807" e_stop="12748" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="12747" i_stop="12557" i_length="191"/>
          </intron>
          <exon e_serial="6" e_score="0.952">
            <gDNA_exon_boundary e_start="12556" e_stop="12453" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14617" stop="14396"/>
              <exon start="14312" stop="14205"/>
              <exon start="14110" stop="13980"/>
              <exon start="13363" stop="13263"/>
              <exon start="12807" stop="12748"/>
              <exon start="12556" stop="12506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14614" stop="14396"/>
              <exon start="14312" stop="14205"/>
              <exon start="14110" stop="13980"/>
              <exon start="13363" stop="13263"/>
              <exon start="12807" stop="12748"/>
              <exon start="12556" stop="12453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14614" stop="14396"/>
              <exon start="14312" stop="14205"/>
              <exon start="14110" stop="13980"/>
              <exon start="13363" stop="13263"/>
              <exon start="12807" stop="12748"/>
              <exon start="12556" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14614" stop="14396"/>
              <exon start="14312" stop="14205"/>
              <exon start="14110" stop="13980"/>
              <exon start="13363" stop="13263"/>
              <exon start="12807" stop="12748"/>
              <exon start="12556" stop="12515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14614" stop="14396"/>
              <exon start="14312" stop="14205"/>
              <exon start="14110" stop="13980"/>
              <exon start="13363" stop="13263"/>
              <exon start="12807" stop="12752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14607" stop="14396"/>
              <exon start="14312" stop="14205"/>
              <exon start="14110" stop="13980"/>
              <exon start="13363" stop="13263"/>
              <exon start="12807" stop="12748"/>
              <exon start="12556" stop="12511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14581" stop="14396"/>
              <exon start="14312" stop="14205"/>
              <exon start="14110" stop="13980"/>
              <exon start="13363" stop="13263"/>
              <exon start="12807" stop="12776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTTTCCTTCGGCATAT : CAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTA : CTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAG : GTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAG : GTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTAATAG : ACAAAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCTGGACAACTTTGAGCAAGGTGTCAAGGAATGCCTTGAAGTTTGATTATCCTTATTCAAGTCAA</gDNA_template>
            <first_frame> T  N  T  V  A  F  Q  P  P  *  P  R  *  V  S  P  L  S  L  P  P  P  C  L  R  R  P  *  N  L  R  H  R  *  N  N  R  R  L  R  R  R  S  K  Q  S  F  S  A  V  E  T  P  S  F  G  S  H  S  L  L  L  *  L  I  L  P  P  L  F  P  S  A  Y  :  Q  D  Q  K  N  G  *  E  I  R  R  R  R  L  R  S  T  F  W  L  Q  S  R  L  L  E  T  S  S  D  M  L  I  S  Y  L  :  L  E  L  N  Q  S  L  V  K  R  N  L  K  K  F  R  A  Y  *  G  L  L  Q  G  I  V  C  L  K  R  G  I  P  S  F  S  F  N  Q  N  Q  E  L  R :   F  A  H  S  S  W  L  *  K  M  L  L  L  C  F  L  T  R  T  R  *  S  *  Q  L  K  P  N  L  S  I  S  *   : G  L  L  L  L  S  V  T  W  Q  M  N  L  M  C  K  L  L  L  I   : D  K  R  L  Q  M  L  S  W  I  H  *  P  V  W  T  T  L  S  K  V  S  R  N  A  L  K  F  D  Y  P  Y  S  S  Q </first_frame>
            <second_frame>  P  I  P  L  R  F  N  H  H  D  P  A  E  Y  H  P  Y  P  F  L  H  R  A  S  D  A  P  E  T  S  A  I  G  E  T  T  A  A  Y  A  A  D  R  S  K  V  F  Q  P  *  K  R  R  R  L  A  L  T  H  C  S  S  N  S  S  C  L  R  F  F  L  R  H  I :   R  T  K  R  M  A  E  R  S  E  E  E  D  C  E  V  P  F  G  S  N  R  G  F  *  K  H  P  P  I  C  *  S  L  T  Y :   *  N  *  T  R  V  W  *  K  G  T  *  R  S  S  E  L  I  E  V  C  C  K  G  L  C  A  S  R  E  E  F  L  R  S  V  S  I  K  I  R  S  *   : G  L  H  I  P  A  G  C  E  K  C  F  F  F  A  S  *  Q  G  P  G  K  V  S  S  *  S  Q  T  Y  R  S  H  K  :  V  F  C  F  S  Q  *  H  G  K  *  I  *  C  A  S  C  F  *  *  :  T  K  G  C  K  C  S  H  G  Y  T  D  L  S  G  Q  L  *  A  R  C  Q  G  M  P  *  S  L  I  I  L  I  Q  V   </second_frame>
            <third_frame>   Q  Y  R  C  V  S  T  T  M  T  P  L  S  I  T  L  I  P  S  S  T  V  P  P  T  P  L  K  P  P  P  S  V  K  Q  P  P  P  T  P  P  I  E  A  K  F  F  S  R  R  N  A  V  V  W  L  S  L  I  A  P  L  T  H  P  A  S  A  F  S  F  G  I   : S  G  P  K  E  W  L  R  D  Q  K  K  K  T  A  K  Y  L  L  A  P  I  E  A  S  R  N  I  L  R  Y  A  N  L  L  L   : T  R  T  E  P  E  F  G  E  K  E  L  E  E  V  Q  S  L  L  R  S  A  A  R  D  C  V  P  Q  E  R  N  S  F  V  Q  F  Q  S  K  S  G  V  E  :  V  C  T  F  Q  L  V  V  K  N  A  S  S  L  L  P  D  K  D  P  V  K  L  A  A  E  A  K  L  I  D  L  I  R :   S  F  A  S  L  S  D  M  A  N  E  F  D  V  Q  V  A  S  N  R :   Q  K  V  A  N  A  L  M  D  T  L  T  C  L  D  N  F  E  Q  G  V  K  E  C  L  E  V  *  L  S  L  F  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14615" stop="14396"/>
                    <exon start="14312" stop="14205"/>
                    <exon start="14110" stop="13980"/>
                    <exon start="13363" stop="13263"/>
                    <exon start="12807" stop="12748"/>
                    <exon start="12556" stop="12472"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYRCVSTTMTPLSITLIPSSTVPPTPLKPPPSVKQPPPTPPIEAKFFSRRNAVVWLSLIAPLTHPASAFSFGISGPKEWLRDQKKKTAKYLLAPIEASRNILRYANLLLTRTEPEFGEKELEEVQSLLRSAARDCVPQERNSFVQFQSKSGVEVCTFQLVVKNASSLLPDKDPVKLAAEAKLIDLIRSFASLSDMANEFDVQVASNRQKVANALMDTLTCLDNFEQGVKECLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="35581" PGL_stop="37255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35581" e_stop="35647"/>
            <exon e_start="36189" e_stop="36246"/>
            <exon e_start="36445" e_stop="36504"/>
            <exon e_start="36797" e_stop="36859"/>
            <exon e_start="36930" e_stop="37255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.746" acc_prob="0.772" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35581" e_stop="35647" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.985">
            <gDNA_intron_boundary i_start="35648" i_stop="36188" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36189" e_stop="36246" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="36247" i_stop="36444" i_length="198"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36445" e_stop="36504" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.746" acc_prob="0.772">
            <gDNA_intron_boundary i_start="36505" i_stop="36796" i_length="292"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36797" e_stop="36859" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36860" i_stop="36929" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36930" e_stop="37255" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35581" stop="35647"/>
              <exon start="36189" stop="36246"/>
              <exon start="36445" stop="36504"/>
              <exon start="36797" stop="36859"/>
              <exon start="36930" stop="37255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAA : GTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAG : TCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAG : TTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAG : GTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</gDNA_template>
            <first_frame> F  S  Y  *  E  F  S  V  I  T  L  K  M  K  Y  T  I  L  S  G  L  S   : S  L  K  K  L  M  M  P  A  R  R  C  F  R  S  F  T  S  C  S :   P  K  V  R  R  S  G  S  V  I  S  R  H  N  E  N  V  T  K  S :   S  T  R  S  G  D  N  *  *  R  L  V  I  R  I  L  V  L  H  I  R :   W  K  D  L  L  A  F  I  P  V  K  S  Q  T  *  A  C  I  P  R  I  S  T  I  G  L  V  R  I  L  C  L  M  N  L  V  S  S  L  F  E  G  I  L  *  S  R  G  Q  R  Q  C  I  L  K  K  S  F  A  H  S  N  L  H  S  E  L  P  T  W  K  I  F  M  F  C  G  I  I  T  *  I  V  S  Y  L  F  V  L  S  H  I  C  T  Y  L  I  V  N  L  N  Y  I  K  Q  L  E  W  </first_frame>
            <second_frame>  S  V  I  E  N  S  A  *  S  H  *  R  *  N  T  P  S  *  V  V  S  Q  :  V  *  R  N  *  *  C  Q  Q  G  D  V  F  G  A  S  Q  A  A   : V  Q  R  *  G  G  Q  A  Q  S  S  A  G  T  T  R  M  S  P  K   : V  P  Q  G  L  G  T  T  N  E  D  W  L  S  E  F  S  F  C  T  S   : G  G  K  I  C  L  P  L  Y  Q  S  S  H  K  L  E  P  V  F  P  G  *  V  L  *  A  *  *  G  F  Y  A  S  *  I  W  Y  P  L  Y  L  R  G  S  C  N  P  G  A  K  G  S  A  F  *  R  R  A  L  L  I  L  I  Y  I  P  S  Y  Q  H  G  K  S  L  C  F  V  V  *  *  L  K  L  Y  H  I  C  L  C  C  L  I  Y  A  L  I  *  L  *  I  *  I  I  *  N  N  *  N  G </second_frame>
            <third_frame>   Q  L  L  R  I  Q  R  D  H  I  E  D  E  I  H  H  L  K  W  S  L  K :   S  E  E  T  D  D  A  S  K  E  M  F  S  E  L  H  K  L  Q  :  S  K  G  E  E  V  R  L  S  H  Q  Q  A  Q  R  E  C  H  Q  K  :  F  H  K  V  W  G  Q  L  M  K  T  G  Y  Q  N  S  R  F  A  H  Q  :  V  E  R  F  A  C  L  Y  T  S  Q  V  T  N  L  S  L  Y  S  P  D  K  Y  Y  R  P  S  E  D  F  M  P  H  E  F  G  I  L  S  I  *  G  D  L  V  I  Q  G  P  K  A  V  H  F  E  E  E  L  C  S  F  *  F  T  F  R  V  T  N  M  E  N  L  Y  V  L  W  Y  N  N  L  N  C  I  I  F  V  C  A  V  S  Y  M  H  L  S  D  C  E  F  E  L  Y  K  T  T  R  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35583" stop="35647"/>
                    <exon start="36189" stop="36246"/>
                    <exon start="36445" stop="36504"/>
                    <exon start="36797" stop="36859"/>
                    <exon start="36930" stop="37052"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLRIQRDHIEDEIHHLKWSLKSEETDDASKEMFSELHKLQSKGEEVRLSHQQAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVTNLSLYSPDKYYRPSEDFMPHEFGILSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="47408" PGL_stop="42822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47408" e_stop="47271"/>
            <exon e_start="47161" e_stop="47090"/>
            <exon e_start="46345" e_stop="46271"/>
            <exon e_start="45071" e_stop="44991"/>
            <exon e_start="44324" e_stop="44255"/>
            <exon e_start="44179" e_stop="44088"/>
            <exon e_start="43385" e_stop="43344"/>
            <exon e_start="43252" e_stop="43172"/>
            <exon e_start="42993" e_stop="42822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.573" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.625" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.987" e_score="0.989"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="47408" e_stop="47271" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.573">
            <gDNA_intron_boundary i_start="47270" i_stop="47162" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47161" e_stop="47090" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47089" i_stop="46346" i_length="744"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46345" e_stop="46271" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.738">
            <gDNA_intron_boundary i_start="46270" i_stop="45072" i_length="1199"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45071" e_stop="44991" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.625">
            <gDNA_intron_boundary i_start="44990" i_stop="44325" i_length="666"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44324" e_stop="44255" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="44254" i_stop="44180" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="44179" e_stop="44088" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.987">
            <gDNA_intron_boundary i_start="44087" i_stop="43386" i_length="702"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43385" e_stop="43344" e_length="42"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43343" i_stop="43253" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43252" e_stop="43172" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.929" acc_prob="0.947">
            <gDNA_intron_boundary i_start="43171" i_stop="42994" i_length="178"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="42993" e_stop="42822" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47408" stop="47271"/>
              <exon start="47161" stop="47090"/>
              <exon start="46345" stop="46271"/>
              <exon start="45071" stop="44991"/>
              <exon start="44324" stop="44255"/>
              <exon start="44179" stop="44088"/>
              <exon start="43385" stop="43344"/>
              <exon start="43252" stop="43172"/>
              <exon start="42993" stop="42822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47346" stop="47271"/>
              <exon start="47161" stop="47090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTAAAAAACGGGTCGGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAG : CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG : TCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAG : GCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAA : GTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAG : ATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGCAGAAGAGGAGAGTGGGACAAAGTCGAG : ATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTG : ATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTG : GTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTCCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTCGCACTGGATGT</gDNA_template>
            <first_frame> S  *  K  T  G  R  G  N  *  P  I  S  N  S  N  I  S  L  C  K  I  L  S  N  R  T  A  A  L  I  R  S  L  S  G  E  K  M  E  A  N  A  P  Q  F  K  :  L  I  L  G  S  S  S  T  A  R  K  K  I  L  G  D  M  G  Y  E  F  T  T  M  :  S  A  D  I  D  E  K  A  I  R  K  E  K  P  E  D  L  V  M  A  L  A  E  A  K  :  A  E  A  I  I  P  R  V  S  I  G  E  S  E  G  D  A  E  P  T  L  L  I  T  C  D  Q  :  V  V  V  Y  E  G  V  I  R  E  K  P  S  S  E  A  E  A  R  Q  F  M  K   : D  Y  A  N  G  H  A  A  T  V  S  S  V  L  V  T  N  L  T  T  G  S  R  R  G  E  W  D  K  V  E  :  I  Y  F  H  D  I  P  D  Q  V  I  D  K  L  :  I  E  E  G  I  V  L  Y  A  A  G  G  L  I  I  E  H  P  L  V  L  P  Y  I  K  E  V  :  V  G  S  T  D  S  V  M  G  L  P  K  A  L  T  E  R  L  I  K  E  V  L  *  Y  D  Y  D  P  A  P  T  *  M  S  S  R  S  I  I  L  I  Y  A  I  G  A  E  I  I  I  D  C  S  H  W  M  </first_frame>
            <second_frame>  R  K  K  R  V  G  A  I  D  P  F  Q  I  V  T  F  P  C  V  K  F  S  P  I  G  L  R  R  *  S  V  H  S  P  A  K  K  W  K  P  M  L  L  S  L  S :   *  F  W  V  H  P  L  L  L  G  K  R  F  *  A  T  W  D  T  S  S  Q  P  C :   L  Q  I  L  M  R  K  L  S  G  K  K  S  L  K  I  *  L  W  L  L  L  R  Q  R :   Q  K  P  S  Y  Q  G  F  Q  L  E  N  P  K  G  M  P  S  Q  H  F  *  L  R  V  I  K :   W  W  S  M  K  V  *  S  G  K  N  H  P  V  K  Q  K  H  V  S  S  *  K  :  I  T  P  M  D  M  Q  Q  P  *  V  L  F  L  S  R  T  *  Q  Q  E  A  E  E  E  S  G  T  K  S  R :   F  I  S  T  T  Y  Q  I  K  S  *  I  N  * :   L  R  K  G  *  F  F  M  Q  L  V  A  *  *  L  N  I  L  S  F  C  L  I  L  R  K  W :   L  A  R  L  I  A  *  W  V  S  Q  K  L  S  P  K  D  L  *  R  R  F  F  S  M  T  M  I  L  L  L  P  E  *  V  R  D  L  *  F  *  Y  T  L  L  E  L  K  L  S  L  I  V  R  T  G  C </second_frame>
            <third_frame>   V  K  N  G  S  G  Q  L  T  H  F  K  *  *  H  F  L  V  *  N  S  L  Q  S  D  C  G  V  N  P  F  T  L  R  R  K  N  G  S  Q  C  S  S  V  *   : A  N  F  G  F  I  L  Y  C  S  E  K  D  F  R  R  H  G  I  R  V  H  N  H   : V  C  R  Y  *  *  E  S  Y  P  E  R  K  A  *  R  F  S  Y  G  S  C  *  G  K   : G  R  S  H  H  T  K  G  F  N  W  R  I  R  R  G  C  R  A  N  T  S  N  Y  V  *  S   : S  G  G  L  *  R  C  D  Q  G  K  T  I  Q  *  S  R  S  T  S  V  H  E  R :   L  R  Q  W  T  C  S  N  R  E  F  C  S  C  H  E  P  D  N  R  K  Q  K  R  R  V  G  Q  S  R   : D  L  F  P  R  H  T  R  S  S  H  R  *  T   : D  *  G  R  D  S  S  L  C  S  W  W  L  D  N  *  T  S  S  R  F  A  L  Y  *  G  S   : G  W  L  D  *  *  R  D  G  S  P  K  S  S  H  R  K  T  Y  K  G  G  S  L  V  *  L  *  S  C  S  Y  L  N  E  F  A  I  Y  N  F  D  I  R  Y  W  S  *  N  Y  H  *  L  F  A  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47381" stop="47271"/>
                    <exon start="47161" stop="47090"/>
                    <exon start="46345" stop="46271"/>
                    <exon start="45071" stop="44991"/>
                    <exon start="44324" stop="44255"/>
                    <exon start="44179" stop="44088"/>
                    <exon start="43385" stop="43344"/>
                    <exon start="43252" stop="43172"/>
                    <exon start="42993" stop="42922"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PISNSNISLCKILSNRTAALIRSLSGEKMEANAPQFKLILGSSSTARKKILGDMGYEFTTMSADIDEKAIRKEKPEDLVMALAEAKAEAIIPRVSIGESEGDAEPTLLITCDQVVVYEGVIREKPSSEAEARQFMKDYANGHAATVSSVLVTNLTTGSRRGEWDKVEIYFHDIPDQVIDKLIEEGIVLYAAGGLIIEHPLVLPYIKEVVGSTDSVMGLPKALTERLIKEVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="47681" PGL_stop="48330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47681" e_stop="48330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="47681" e_stop="48330" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47681" stop="48330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACCCCAACCTCCATACCCATACACCATTGGTTATATTCTTCCCCCATCATTTTAATGATTTCAAAATTCTTAGTATCAATGGTTATCTTCTTCCCCCACCATTCTAATGATTTCAAAATTCTTAGCATTTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTATCTAAAAAACGAGATGAAGTAAAAAATTATAATTAATAAAAAAGCTGATGAAAAAAAAAATTTGTCGAGTTAAAGATAACTGTACAGGGAAGGGGGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAGGTTTTTCTCTCTCTTTTTTTCTTTTTTTTTTTACTTTAAAATAATTTTTATTTTTTTACTTAATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCGATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTG</gDNA_template>
            <first_frame> P  T  P  T  S  I  P  I  H  H  W  L  Y  S  S  P  I  I  L  M  I  S  K  F  L  V  S  M  V  I  F  F  P  H  H  S  N  D  F  K  I  L  S  I  F  V  S  F  I  N  F  S  K  R  F  F  S  P  S  F  S  I  *  K  T  R  *  S  K  K  L  *  L  I  K  K  L  M  K  K  K  I  C  R  V  K  D  N  C  T  G  K  G  G  S  P  L  M  E  L  E  E  M  Y  V  L  F  Q  L  K  A  G  K  W  V  F  R  F  F  S  L  F  F  S  F  F  F  Y  F  K  I  I  F  I  F  L  L  N  N  I  M  F  K  *  F  F  G  L  K  N  N  T  C  H  Y  L  I  G  Q  I  D  M  S  A  R  V  Y  F  T  H  S  L  F  F  V  Y  S  R  K  N  V  Q  M  V  Q  I  Q  N  G  *  S  V  R  *  V  V  R  L  V  E  V  S  K  *  I  I  G  T  S  L  S  G  R  I  *  L   </first_frame>
            <second_frame>  P  P  Q  P  P  Y  P  Y  T  I  G  Y  I  L  P  P  S  F  *  *  F  Q  N  S  *  Y  Q  W  L  S  S  S  P  T  I  L  M  I  S  K  F  L  A  F  L  F  H  L  *  I  F  R  R  D  S  F  P  H  L  S  L  S  K  K  R  D  E  V  K  N  Y  N  *  *  K  S  *  *  K  K  K  F  V  E  L  K  I  T  V  Q  G  R  G  G  R  H  *  W  S  *  R  K  C  M  F  C  S  S  *  R  Q  G  S  G  C  L  G  F  S  L  S  F  F  L  F  F  F  T  L  K  *  F  L  F  F  Y  L  I  I  *  C  L  N  N  F  L  D  *  K  I  T  H  V  I  I  *  L  V  K  L  T  C  Q  R  E  C  I  S  H  I  L  Y  F  L  F  I  L  E  K  M  F  K  W  F  K  F  R  M  V  E  V  F  D  R  *  Y  V  *  L  R  C  L  N  E  *  S  G  Q  V  *  V  A  A  Y  D  F  </second_frame>
            <third_frame>   H  P  N  L  H  T  H  T  P  L  V  I  F  F  P  H  H  F  N  D  F  K  I  L  S  I  N  G  Y  L  L  P  P  P  F  *  *  F  Q  N  S  *  H  F  C  F  I  Y  K  F  F  E  E  I  L  F  P  I  F  L  Y  L  K  N  E  M  K  *  K  I  I  I  N  K  K  A  D  E  K  K  N  L  S  S  *  R  *  L  Y  R  E  G  G  V  A  I  N  G  V  R  G  N  V  C  F  V  P  V  E  G  R  E  V  G  V  *  V  F  L  S  L  F  F  F  F  F  L  L  *  N  N  F  Y  F  F  T  *  *  Y  N  V  *  I  I  F  W  I  K  K  *  H  M  S  L  F  D  W  S  N  *  H  V  S  A  S  V  F  H  T  F  S  I  F  C  L  F  S  K  K  C  S  N  G  S  N  S  E  W  L  K  C  S  I  G  S  T  S  S  *  G  V  *  M  N  N  R  D  K  F  E  W  P  H  M  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47897" stop="48112"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKKLMKKKICRVKDNCTGKGGSPLMELEEMYVLFQLKAGKWVFRFFSLFFSFFFYFKIIFIFLLNNIMFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="53559" PGL_stop="55590"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53769" e_stop="53771"/>
            <exon e_start="53988" e_stop="55590"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.833" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53769" e_stop="53771" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.833">
            <gDNA_intron_boundary i_start="53772" i_stop="53987" i_length="216"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="53988" e_stop="55590" e_length="1603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53769" stop="53771"/>
              <exon start="53988" stop="54559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54299" stop="54788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54443" stop="54868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54603" stop="55331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54981" stop="55473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55059" stop="55458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55272" stop="55590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGG : TTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATGGCATGTTCATCATTTTCTATTTGCTTA</gDNA_template>
            <first_frame> R  :  F  T  S  *  L  G  R  G  R  F  I  *  L  I  T  L  V  I  K  L  L  S  I  S  R  L  P  M  N  G  S  C  S  I  H  G  S  Q  V  I  L  M  S  R  R  L  S  F  R  G  R  F  W  S  V  L  A  S  G  T  K  L  M  F  L  R  L  C  I  S  F  L  R  S  L  L  C  R  L  R  G  K  K  L  S  K  L  C  L  V  P  W  I  N  C  L  L  I  P  L  *  N  L  R  K  *  V  C  L  L  *  I  V  V  C  S  I  R  L  H  R  F  Q  L  *  L  *  T  S  I  S  *  E  V  I  *  G  V  L  I  W  E  V  W  V  V  V  L  V  *  L  P  L  I  L  L  R  T  C  C  K  C  T  E  I  P  M  L  L  L  L  V  L  R  I  L  R  R  T  G  I  L  G  I  R  S  P  C  *  Y  Q  I  V  C  L  E  S  E  V  L  L  F  C  C  L  T  S  P  W  I  E  E  G  R  N  I  S  L  F  M  L  L  G  H  I  V  G  L  M  I  R  H  F  V  V  F  T  K  N  R  M  M  L  G  K  L  G  F  L  C  Q  K  I  S  W  Q  S  L  V  E  R  L  R  R  I  S  L  H  W  V  L  L  F  Y  P  S  V  S  S  F  C  S  L  V  L  *  *  L  R  K  Y  S  I  S  I  S  S  L  T  F  Q  I  S  S  W  P  L  I  I  S  A  Y  T  L  V  E  G  L  L  L  T  S  W  K  R  I  Y  S  *  H  R  F  T  L  R  H  L  E  *  P  C  T  A  L  E  I  L  H  P  A  L  S  G  M  N  W  R  I  *  R  P  K  E  E  *  R  K  V  T  K  F  G  R  L  H  L  E  V  A  L  N  V  I  V  L  F  G  R  H  Y  E  M  *  S  L  L  P  M  V  P  G  R  I  V  S  T  G  I  L  *  K  *  C  H  N  T  V  E  I  M  I  R  Q  V  K  G  Y  L  *  L  L  P  C  T  S  W  H  L  F  S  *  S  R  V  M  L  Y  F  C  S  R  V  K  Y  H  F  V  L  F  L  V  *  S  L  M  L  I  C  V  V  P  F  Q  S  I  T  C  M  T  S  Y  M  *  Q  F  L  F  Y  C  S  Y  F  P  D  K  H  L  F  M  T  E  L  M  S  S  G  F  K  L  L  T  R  T  V  I  S  H  C  *  *  N  D  S  I  N  G  M  F  I  I  F  Y  L  L  </first_frame>
            <second_frame>  G :   L  H  H  D  S  A  E  A  G  L  F  D  *  L  L  L  L  *  S  S  *  A  S  Q  G  S  L  *  T  V  H  A  A  F  T  A  H  R  *  F  *  *  V  V  A  *  V  S  E  E  D  S  G  A  F  W  P  R  G  R  N  L  C  S  *  G  Y  A  S  A  S  S  A  A  F  Y  A  G  C  E  G  R  S  *  A  S  Y  V  W  C  L  G  *  I  V  C  *  Y  L  C  E  T  *  E  N  R  C  A  C  C  E  L  *  F  V  Q  S  D  S  I  A  F  S  Y  D  C  E  Q  V  *  V  E  R  *  Y  K  E  F  *  S  G  R  Y  G  L  *  C  W  C  N  C  R  *  S  C  *  G  H  V  A  S  A  Q  K  Y  L  C  C  C  C  *  Y  *  E  Y  Y  A  E  L  V  F  W  E  *  E  V  H  V  D  T  K  L  F  V  *  S  R  R  F  C  C  S  A  V  *  Q  V  R  G  *  K  K  G  E  I  *  A  C  S  C  C  *  D  T  S  W  G  *  *  *  G  I  S  L  C  L  P  R  T  G  *  C  W  E  N  W  G  F  F  V  K  R  S  H  G  N  R  W  W  S  A  *  D  E  Y  H  Y  I  G  S  S  C  S  T  H  Q  *  A  A  S  V  L  W  F  S  D  N  *  E  N  I  Q  *  A  Y  Q  A  L  H  S  R  F  Q  V  G  L  *  S  F  L  H  T  R  W  W  K  G  C  Y  *  R  A  G  K  E  F  T  A  D  T  G  S  R  *  G  I  S  N  D  P  A  P  L  W  K  Y  F  I  Q  L  Y  L  V  *  I  G  V  Y  R  G  Q  R  K  N  E  E  R  *  Q  S  L  A  D  C  I  W  K  W  L  *  M  *  *  C  C  L  A  G  T  T  K  C  K  A  F  S  R  W  S  L  G  G  L  Y  R  Q  V  S  C  K  S  S  V  I  T  L  W  R  S  *  L  G  K  L  R  A  I  C  S  C  F  R  V  R  H  G  T  S  S  L  E  A  E  *  C  S  T  S  V  H  E  S  S  I  I  L  S  F  S  *  F  R  A  L  C  *  F  V  L  Y  H  F  N  L  L  L  V  *  L  H  I  C  S  N  S  Y  F  I  V  V  I  F  L  I  N  I  Y  S  *  L  S  L  *  V  V  D  S  S  C  *  H  A  L  L  F  L  T  V  S  E  M  I  P  L  M  A  C  S  S  F  S  I  C  L </second_frame>
            <third_frame>    : V  Y  I  M  T  R  P  R  P  V  Y  L  I  D  Y  S  C  Y  K  A  P  E  H  L  K  A  P  Y  E  R  F  M  Q  H  S  R  L  T  G  D  F  D  E  S  S  L  E  F  Q  R  K  I  L  E  R  S  G  L  G  D  E  T  Y  V  P  E  A  M  H  Q  L  P  P  Q  P  S  M  Q  A  A  R  E  E  A  E  Q  V  M  F  G  A  L  D  K  L  F  A  N  T  S  V  K  P  K  K  I  G  V  L  V  V  N  C  S  L  F  N  P  T  P  S  L  S  A  M  I  V  N  K  Y  K  L  R  G  N  I  R  S  F  N  L  G  G  M  G  C  S  A  G  V  I  A  V  D  L  A  K  D  M  L  Q  V  H  R  N  T  Y  A  V  V  V  S  T  E  N  I  T  Q  N  W  Y  F  G  N  K  K  S  M  L  I  P  N  C  L  F  R  V  G  G  S  A  V  L  L  S  N  K  S  V  D  R  R  R  A  K  Y  K  L  V  H  V  V  R  T  H  R  G  A  D  D  K  A  F  R  C  V  Y  Q  E  Q  D  D  A  G  K  T  G  V  S  L  S  K  D  L  M  A  I  A  G  G  A  L  K  T  N  I  T  T  L  G  P  L  V  L  P  I  S  E  Q  L  L  F  F  G  S  L  I  I  K  K  I  F  N  K  H  I  K  P  Y  I  P  D  F  K  L  A  F  D  H  F  C  I  H  A  G  G  R  A  V  I  D  E  L  E  K  N  L  Q  L  T  Q  V  H  V  E  A  S  R  M  T  L  H  R  F  G  N  T  S  S  S  S  I  W  Y  E  L  A  Y  I  E  A  K  G  R  M  K  K  G  N  K  V  W  Q  I  A  F  G  S  G  F  K  C  N  S  A  V  W  Q  A  L  R  N  V  K  P  S  P  D  G  P  W  E  D  C  I  D  R  Y  P  V  K  V  V  S  *  H  C  G  D  H  D  *  A  S  *  G  L  S  V  A  A  S  V  Y  V  M  A  P  L  L  L  K  P  S  D  A  L  L  L  F  T  S  Q  V  S  F  C  P  F  L  S  L  E  P  Y  A  N  L  C  C  T  I  S  I  Y  Y  L  Y  D  F  I  Y  V  A  I  P  I  L  L  *  L  F  S  *  *  T  S  I  H  D  *  A  Y  E  *  W  I  Q  V  A  N  T  H  C  Y  F  S  L  L  V  K  *  F  H  *  W  H  V  H  H  F  L  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53771" stop="55231"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYIMTRPRPVYLIDYSCYKAPEHLKAPYERFMQHSRLTGDFDESSLEFQRKILERSGLGDETYVPEAMHQLPPQPSMQAAREEAEQVMFGALDKLFANTSVKPKKIGVLVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSVDRRRAKYKLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFGSLIIKKIFNKHIKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLTQVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMKKGNKVWQIAFGSGFKCNSAVWQALRNVKPSPDGPWEDCIDRYPVKVVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55262" stop="55456"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLSVAASVYVMAPLLLKPSDALLLFTSQVSFCPFLSLEPYANLCCTISIYYLYDFIYVAIPILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53559" e_stop="54296"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="53559" e_stop="54296" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53559" stop="54116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53562" stop="54296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53569" stop="54111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53612" stop="54089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGTCAGCTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTA</gDNA_template>
            <first_frame> K  K  S  A  S  V  V  V  *  *  R  E  E  E  E  E  *  E  R  F  *  S  L  S  N  S  L  I  S  P  I  Y  S  L  S  F  S  P  P  P  *  T  E  P  P  A  R  K  S  T  P  R  T  A  V  V  V  S  Q  S  E  F  R  S  S  R  V  G  G  C  R  I  S  F  R  V  *  T  *  S  T  L  N  *  V  T  I  T  *  S  L  I  C  *  L  Y  V  *  F  L  *  W  L  *  F  *  L  K  L  H  K  *  I  L  M  I  F  V  N  Y  G  Y  I  C  S  I  I  *  S  L  L  L  F  V  P  P  F  W  F  L  D  P  Q  F  T  S  *  L  G  R  G  R  F  I  *  L  I  T  L  V  I  K  L  L  S  I  S  R  L  P  M  N  G  S  C  S  I  H  G  S  Q  V  I  L  M  S  R  R  L  S  F  R  G  R  F  W  S  V  L  A  S  G  T  K  L  M  F  L  R  L  C  I  S  F  L  R  S  L  L  C  R  L  R  G  K  K  L  S  K  L  C  L  V  P  W  I  N  C  L  L  I  P  L  *  N  L </first_frame>
            <second_frame>  K  S  Q  L  Q  W  *  Y  S  R  E  K  K  K  K  S  E  R  G  F  R  A  F  Q  T  L  *  F  P  Q  F  I  L  S  L  F  H  R  R  H  E  R  S  H  R  H  A  S  Q  H  R  E  R  R  W  W  *  A  S  R  S  S  D  P  A  E  *  E  V  A  G  F  P  S  E  C  K  L  K  V  R  *  T  R  L  P  L  L  D  L  S  F  V  D  S  M  F  D  S  C  N  G  C  D  F  N  *  S  F  T  N  E  S  *  *  Y  S  S  I  M  A  T  F  A  V  *  S  S  L  C  Y  Y  L  F  R  R  F  G  F  W  I  H  S  L  H  H  D  S  A  E  A  G  L  F  D  *  L  L  L  L  *  S  S  *  A  S  Q  G  S  L  *  T  V  H  A  A  F  T  A  H  R  *  F  *  *  V  V  A  *  V  S  E  E  D  S  G  A  F  W  P  R  G  R  N  L  C  S  *  G  Y  A  S  A  S  S  A  A  F  Y  A  G  C  E  G  R  S  *  A  S  Y  V  W  C  L  G  *  I  V  C  *  Y  L  C  E  T   </second_frame>
            <third_frame>   K  V  S  F  S  G  S  I  V  E  R  R  R  R  R  V  R  E  V  L  E  P  F  K  L  F  D  F  P  N  L  F  S  L  F  F  T  A  A  M  N  G  A  T  G  T  Q  V  N  T  A  N  G  G  G  G  E  P  V  G  V  Q  I  Q  Q  S  R  R  L  P  D  F  L  Q  S  V  N  L  K  Y  V  K  L  G  Y  H  Y  L  I  S  H  L  L  T  L  C  L  I  P  V  M  A  V  I  L  I  E  A  S  Q  M  N  P  D  D  I  R  Q  L  W  L  H  L  Q  Y  N  L  V  S  V  I  I  C  S  A  V  L  V  F  G  S  T  V  Y  I  M  T  R  P  R  P  V  Y  L  I  D  Y  S  C  Y  K  A  P  E  H  L  K  A  P  Y  E  R  F  M  Q  H  S  R  L  T  G  D  F  D  E  S  S  L  E  F  Q  R  K  I  L  E  R  S  G  L  G  D  E  T  Y  V  P  E  A  M  H  Q  L  P  P  Q  P  S  M  Q  A  A  R  E  E  A  E  Q  V  M  F  G  A  L  D  K  L  F  A  N  T  S  V  K  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53561" stop="54295"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVSFSGSIVERRRRRVREVLEPFKLFDFPNLFSLFFTAAMNGATGTQVNTANGGGGEPVGVQIQQSRRLPDFLQSVNLKYVKLGYHYLISHLLTLCLIPVMAVILIEASQMNPDDIRQLWLHLQYNLVSVIICSAVLVFGSTVYIMTRPRPVYLIDYSCYKAPEHLKAPYERFMQHSRLTGDFDESSLEFQRKILERSGLGDETYVPEAMHQLPPQPSMQAAREEAEQVMFGALDKLFANTSVKP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="63419" PGL_stop="57610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63419" e_stop="63128"/>
            <exon e_start="62140" e_stop="62078"/>
            <exon e_start="61998" e_stop="61909"/>
            <exon e_start="61807" e_stop="61748"/>
            <exon e_start="61644" e_stop="61579"/>
            <exon e_start="61478" e_stop="61413"/>
            <exon e_start="61320" e_stop="61245"/>
            <exon e_start="60571" e_stop="60507"/>
            <exon e_start="60417" e_stop="60326"/>
            <exon e_start="60217" e_stop="60134"/>
            <exon e_start="60047" e_stop="59963"/>
            <exon e_start="59370" e_stop="59324"/>
            <exon e_start="59173" e_stop="59111"/>
            <exon e_start="59029" e_stop="58970"/>
            <exon e_start="58874" e_stop="58809"/>
            <exon e_start="58714" e_stop="58655"/>
            <exon e_start="58359" e_stop="58245"/>
            <exon e_start="57965" e_stop="57610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.997"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.773" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.739" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.784" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.996" e_score="0.978"/>
          <exon-intron don_prob="0.025" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.512" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.759" acc_prob="0.506" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.511" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="63419" e_stop="63128" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="63127" i_stop="62141" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62140" e_stop="62078" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62077" i_stop="61999" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61998" e_stop="61909" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="61908" i_stop="61808" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61807" e_stop="61748" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.825">
            <gDNA_intron_boundary i_start="61747" i_stop="61645" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61644" e_stop="61579" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.751" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61578" i_stop="61479" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61478" e_stop="61413" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.773" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61412" i_stop="61321" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="61320" e_stop="61245" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.739" acc_prob="0.961">
            <gDNA_intron_boundary i_start="61244" i_stop="60572" i_length="673"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="60571" e_stop="60507" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.977" acc_prob="0.784">
            <gDNA_intron_boundary i_start="60506" i_stop="60418" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="0.978">
            <gDNA_exon_boundary e_start="60417" e_stop="60326" e_length="92"/>
          </exon>
          <intron i_serial="9" don_prob="0.862" acc_prob="0.996">
            <gDNA_intron_boundary i_start="60325" i_stop="60218" i_length="108"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="60217" e_stop="60134" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.025" acc_prob="0.990">
            <gDNA_intron_boundary i_start="60133" i_stop="60048" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="60047" e_stop="59963" e_length="85"/>
          </exon>
          <intron i_serial="11" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="59962" i_stop="59371" i_length="592"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="59370" e_stop="59324" e_length="47"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59323" i_stop="59174" i_length="150"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="59173" e_stop="59111" e_length="63"/>
          </exon>
          <intron i_serial="13" don_prob="0.722" acc_prob="0.988">
            <gDNA_intron_boundary i_start="59110" i_stop="59030" i_length="81"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="59029" e_stop="58970" e_length="60"/>
          </exon>
          <intron i_serial="14" don_prob="0.512" acc_prob="0.974">
            <gDNA_intron_boundary i_start="58969" i_stop="58875" i_length="95"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="58874" e_stop="58809" e_length="66"/>
          </exon>
          <intron i_serial="15" don_prob="0.759" acc_prob="0.506">
            <gDNA_intron_boundary i_start="58808" i_stop="58715" i_length="94"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="58714" e_stop="58655" e_length="60"/>
          </exon>
          <intron i_serial="16" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58654" i_stop="58360" i_length="295"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="58359" e_stop="58245" e_length="115"/>
          </exon>
          <intron i_serial="17" don_prob="0.992" acc_prob="0.511">
            <gDNA_intron_boundary i_start="58244" i_stop="57966" i_length="279"/>
          </intron>
          <exon e_serial="18" e_score="0.997">
            <gDNA_exon_boundary e_start="57965" e_stop="57610" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63419" stop="63128"/>
              <exon start="62140" stop="62078"/>
              <exon start="61998" stop="61909"/>
              <exon start="61807" stop="61748"/>
              <exon start="61644" stop="61579"/>
              <exon start="61478" stop="61413"/>
              <exon start="61320" stop="61245"/>
              <exon start="60571" stop="60507"/>
              <exon start="60417" stop="60326"/>
              <exon start="60217" stop="60134"/>
              <exon start="60047" stop="59963"/>
              <exon start="59370" stop="59324"/>
              <exon start="59173" stop="59111"/>
              <exon start="59029" stop="58970"/>
              <exon start="58874" stop="58809"/>
              <exon start="58714" stop="58655"/>
              <exon start="58359" stop="58245"/>
              <exon start="57965" stop="57612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58304" stop="58245"/>
              <exon start="57965" stop="57610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACT : TGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAG : TTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGG : TCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAA : GATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTG : GTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAG : CTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTG : GAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTG : GCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGCTGATATTACCAATGAAGTAAATGAAATTAAG : AGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATG : GTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCG : GTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAG : GTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATT : GTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAG : GGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTG : TTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAG : ATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG : GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAAAT</gDNA_template>
            <first_frame> C  *  F  Q  Y  F  Q  Q  L  H  F  S  *  S  V  V  Q  I  S  R  T  I  E  K  R  G  *  L  K  I  *  R  K  K  N  E  F  Q  R  R  E  Q  *  R  G  S  E  K  A  I  F  T  Y  W  E  L  V  S  Y  G  V  K  T  V  *  Y  D  G  F  F  S  S  Y  S  *  *  F  Y  F  C  S  C  L  C  S  H  S  C  F  G  P  N  P  V  W  F  H   : L  W  L  H  F  T  N  A  N  C  N  Y  Q  R  S  E  A  H  C  F  *   : V  L  F  V  R  F  F  I  Q  C  G  C  Y  G  W  C  N  I  *  W  S  N  F  *  V  H  W  A  K  R   : V  F  N  D  S  C  Y  T  K  Y  H  W  L  A  C  H  L  I  C  Q   : R  S  F  F  S  I  H  G  K  I  V  G  G  L  W  C  G  N  N  L  L  C   : G  S  C  I  Y  C  *  D  C  T  S  E  Y  E  R  G  S  R  V  C  *  P   : A  L  C  Y  N  W  D  H  V  V  L  F  T  G  T  F  C  *  L  E  A  A  C  C  S  W :   S  I  T  L  P  S  T  D  T  W  T  I  F  H  P  R  I  S  S  V  V   : G  Q  N  G  F  N  R  R  F  *  N  F  V  A  S  S  S  R  L  *  A  D  I  T  N  E  V  N  E  I  K  :  R  S  V  A  S  S  T  N  R  R  T  A  M  R  F  A  D  L  K  H  R  R  Y  W  F  P  L  M  :  V  G  I  G  L  L  I  L  Q  Q  L  G  G  I  N  G  V  I  F  Y  S  S  N  I  F  L  S  A   : G  I  S  S  S  N  A  A  T  F  G  V  G  A  I  Q  :  V  V  A  T  A  V  S  T  W  L  V  D  R  T  G  R  R  I  L  L  I  :  V  S  S  A  G  M  A  V  S  L  L  I  V  S  V  A  F  Y  L  K  :  G  Y  V  S  E  D  S  T  L  Y  G  V  L  G  I  V  S  V  V  G  V  V  :  F  M  I  I  S  F  S  L  G  M  G  P  I  P  W  L  I  M  S  E  :  I  L  P  I  K  I  K  G  L  A  G  S  T  A  T  L  A  N  W  L  F  S  W  V  I  T  V  T  A  P  L  L  M  A  W  S  S  G   : G  T  F  T  I  Y  M  V  M  C  A  F  T  V  A  F  V  A  I  W  V  P  E  T  K  G  R  T  L  E  E  I  Q  F  S  F  R  *  K  L  T  P  S  Q  T  G  L  C  D  P  L  F  F  L  S  Q  N  S  I  S  L  V  Q  K  F  Q  F  F  T  Y  I  G  K  N  E  L  H  M  L  L  Q  S  V  Y  I  S  S  *  S  C  H  L  L  *  F  T  V  *  F  Y  Y  F  C  I  F  *  V  *  L  Y  H  S  I  *  N  K  V  R  N </first_frame>
            <second_frame>  A  N  S  S  I  F  N  N  F  I  F  L  D  L  *  F  K  F  Q  E  L  *  R  K  G  V  D  S  K  F  E  E  K  K  M  S  F  R  E  E  N  N  E  G  D  L  K  K  P  F  L  H  T  G  S  W  Y  R  M  G  S  R  Q  S  S  M  M  G  S  S  Q  A  I  R  D  S  S  I  S  V  L  A  C  V  L  I  V  A  L  G  P  I  Q  F  G  F  T  :  C  G  Y  T  S  P  T  Q  I  A  I  T  K  D  L  K  L  T  V  S  E  :  F  S  L  F  G  S  L  S  N  V  G  A  M  V  G  A  I  S  S  G  Q  I  S  E  Y  I  G  R  K  G  :  S  L  M  I  A  A  I  P  N  I  I  G  W  L  A  I  S  F  A  K  :  D  P  S  F  L  Y  M  G  R  L  L  E  G  F  G  V  G  I  I  S  Y  V  :  V  P  V  Y  I  A  E  I  A  P  Q  N  M  R  G  G  L  G  S  V  N  Q  :  L  S  V  T  I  G  I  M  L  S  Y  L  L  G  L  F  V  N  W  R  L  L  A  V  L   : G  A  L  P  C  L  A  L  I  P  G  L  F  F  I  P  E  S  P  R  W  L  :  A  K  M  G  L  T  E  D  F  E  T  S  L  Q  V  L  R  G  F  E  L  I  L  P  M  K  *  M  K  L  R :   G  L  *  H  H  Q  Q  T  E  E  Q  Q  C  V  L  R  I  S  N  I  E  D  I  G  F  L  S  W :   *  E  L  D  Y  L  S  C  N  S  *  E  E  S  T  V  L  Y  S  I  P  A  T  F  S  Y  L  P  :  V  F  R  Q  V  M  L  Q  L  L  V  S  V  L  Y  R :   L  L  Q  L  Q  F  L  H  G  W  W  T  E  L  D  V  E  F  Y  *  L :   F  P  R  L  E  W  L  L  V  F  L  L  S  P  L  P  S  I  *  R :   V  M  Y  L  R  I  L  P  S  M  V  S  W  E  *  C  P  *  L  G  W  C :   S  *  L  F  H  S  R  S  E  W  D  Q  F  H  G  L  *  C  L  R :   F  F  Q  S  R  S  K  V  S  L  E  V  R  Q  H  *  P  T  G  Y  S  R  G  *  *  Q  *  L  H  R  C  L  W  L  G  A  V  E  :  E  P  S  L  F  T  W  L  C  V  L  S  P  W  R  S  W  Q  F  G  Y  R  R  R  K  G  E  L  *  R  K  F  S  F  L  S  D  E  N  L  P  P  P  K  Q  A  F  V  I  L  C  S  F  C  H  K  T  Q  F  P  L  C  K  S  F  N  F  S  H  I  *  G  R  M  S  C  T  C  C  F  R  V  C  T  F  H  L  D  L  A  I  C  C  N  L  L  Y  D  F  I  I  F  V  Y  S  K  C  D  Y  T  I  Q  F  K  I  K  C  E   </second_frame>
            <third_frame>   L  I  P  V  F  S  T  T  S  F  F  L  I  C  S  S  N  F  K  N  Y  R  E  K  G  L  T  Q  N  L  K  K  K  K  *  V  S  E  K  R  T  M  K  G  I  *  K  S  H  F  Y  I  L  G  V  G  I  V  W  G  Q  D  S  L  V  *  W  V  L  L  K  L  F  V  I  V  L  F  L  F  L  L  V  F  S  *  L  L  W  A  Q  S  S  L  V  S  L :   V  A  T  L  H  Q  R  K  L  Q  L  P  K  I  *  S  S  L  F  L  S :   S  L  C  S  V  L  Y  P  M  W  V  L  W  L  V  Q  Y  L  V  V  K  F  L  S  T  L  G  E  K  G :   L  *  *  *  L  L  Y  Q  I  S  L  V  G  L  P  S  H  L  P  K :   I  L  L  F  Y  T  W  E  D  C  W  R  A  L  V  W  E  *  S  L  M  W :   F  L  Y  I  L  L  R  L  H  L  R  I  *  E  G  V  *  G  L  L  T  S :   S  L  L  Q  L  G  S  C  C  P  I  Y  W  D  F  L  L  I  G  G  C  L  L  F  L  :  E  H  Y  L  A  *  H  *  Y  L  D  Y  F  S  S  P  N  L  L  G  G  W :   P  K  W  V  *  Q  K  I  L  K  L  R  C  K  F  F  E  A  L  S  *  Y  Y  Q  *  S  K  *  N  *   : E  V  C  S  I  I  N  K  P  K  N  S  N  A  F  C  G  S  Q  T  *  K  I  L  V  S  S  H   : G  R  N  W  T  T  Y  P  A  T  V  R  R  N  Q  R  C  Y  I  L  F  Q  Q  H  F  P  I  C  R :   Y  F  V  K  *  C  C  N  F  W  C  R  C  Y  T   : G  C  C  N  C  S  F  Y  M  A  G  G  Q  N  W  T  *  N  F  I  N   : C  F  L  G  W  N  G  C  *  S  S  Y  C  L  R  C  L  L  S  K   : G  L  C  I  *  G  F  Y  P  L  W  C  L  G  N  S  V  R  S  W  G  G   : V  H  D  Y  F  I  L  A  R  N  G  T  N  S  M  A  Y  N  V  *   : D  S  S  N  Q  D  Q  R  S  R  W  K  Y  G  N  I  S  Q  L  V  I  L  V  G  N  N  S  D  C  T  V  A  Y  G  L  E  Q  W  R :   N  L  H  Y  L  H  G  Y  V  C  F  H  R  G  V  R  G  N  L  G  T  G  D  E  R  E  N  S  R  G  N  S  V  F  F  Q  M  K  T  Y  P  L  P  N  R  P  L  *  S  F  V  L  F  V  T  K  L  N  F  P  C  A  K  V  S  I  F  H  I  Y  R  E  E  *  V  A  H  A  A  S  E  C  V  H  F  I  L  I  L  P  F  A  V  I  Y  C  M  I  L  L  F  L  Y  I  L  S  V  I  I  P  F  N  L  K  *  S  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63352" stop="63128"/>
                    <exon start="62140" stop="62078"/>
                    <exon start="61998" stop="61909"/>
                    <exon start="61807" stop="61748"/>
                    <exon start="61644" stop="61579"/>
                    <exon start="61478" stop="61413"/>
                    <exon start="61320" stop="61245"/>
                    <exon start="60571" stop="60507"/>
                    <exon start="60417" stop="60337"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKGVDSKFEEKKMSFREENNEGDLKKPFLHTGSWYRMGSRQSSMMGSSQAIRDSSISVLACVLIVALGPIQFGFTCGYTSPTQIAITKDLKLTVSEFSLFGSLSNVGAMVGAISSGQISEYIGRKGSLMIAAIPNIIGWLAISFAKDPSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQNMRGGLGSVNQLSVTIGIMLSYLLGLFVNWRLLAVLGALPCLALIPGLFFIPESPRWLAKMGLTEDFETSLQVLRGFELILPMK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60358" stop="60326"/>
                    <exon start="60217" stop="60134"/>
                    <exon start="60047" stop="59963"/>
                    <exon start="59370" stop="59324"/>
                    <exon start="59173" stop="59111"/>
                    <exon start="59029" stop="58970"/>
                    <exon start="58874" stop="58809"/>
                    <exon start="58714" stop="58655"/>
                    <exon start="58359" stop="58245"/>
                    <exon start="57965" stop="57853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADITNEVNEIKRSVASSTNRRTAMRFADLKHRRYWFPLMVGIGLLILQQLGGINGVIFYSSNIFLSAGISSSNAATFGVGAIQVVATAVSTWLVDRTGRRILLIVSSAGMAVSLLIVSVAFYLKGYVSEDSTLYGVLGIVSVVGVVFMIISFSLGMGPIPWLIMSEILPIKIKGLAGSTATLANWLFSWVITVTAPLLMAWSSGGTFTIYMVMCAFTVAFVAIWVPETKGRTLEEIQFSFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="71393" PGL_stop="73122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71393" e_stop="71494"/>
            <exon e_start="72829" e_stop="73122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71393" e_stop="71494" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="71495" i_stop="72828" i_length="1334"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72829" e_stop="73122" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71393" stop="71494"/>
              <exon start="72829" stop="73122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGG : GAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</gDNA_template>
            <first_frame> F  *  C  *  F  T  A  A  D  I  V  N  A  A  A  A  T  T  T  T  S  A  V  L  G  S  Y  *  W  D  S  *  C  W  :  E  L  S  D  L  R  V  *  G  C  E  Q  P  S  *  I  I  *  G  A  K  D  A  N  Q  A  *  V  *  I  W  W  N  L  R  A  C  *  L  E  K  S  G  S  N  E  D  T  L  S  Y  A  F  H  I  L  N  M  Y  C  T  R  L  F  H  L  R  L  Y  *  N  F  V  Y  T  H  S  *  N  K  G  *  K  M  K  H  K  S  I  E  V  K  I  F  L  I  W  F </first_frame>
            <second_frame>  S  N  V  S  L  Q  Q  Q  I  L  S  M  Q  Q  Q  Q  Q  Q  Q  H  Q  Q  F  L  D  P  I  N  G  I  L  N  V  G :   S  *  V  I  *  G  S  K  D  A  N  N  Q  A  K  *  F  K  G  L  R  M  Q  T  K  L  K  Y  E  S  G  G  I  *  E  L  A  N  W  K  R  A  G  P  M  K  T  H  *  V  M  P  F  I  F  S  T  C  T  A  H  V  Y  S  I  Y  V  Y  I  K  I  L  C  I  H  I  L  E  I  K  V  E  K  *  N  I  K  V  L  K  *  K  S  F  L  F  G   </second_frame>
            <third_frame>   L  M  L  V  Y  S  S  R  Y  C  Q  C  S  S  S  N  N  N  N  I  S  S  S  W  I  L  L  M  G  F  L  M  L   : G  A  K  *  F  K  G  L  R  M  R  T  T  K  L  N  N  L  R  G  *  G  C  K  P  S  L  S  M  N  L  V  E  F  K  S  L  L  I  G  K  E  R  V  Q  *  R  H  T  K  L  C  L  S  Y  S  Q  H  V  L  H  T  F  I  P  S  T  F  I  L  K  F  C  V  Y  T  F  L  K  *  R  L  K  N  E  T  *  K  Y  *  S  E  N  L  S  Y  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0124K05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="75470" PGL_stop="76077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75470" e_stop="76077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="75470" e_stop="76077" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75470" stop="76077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75471" stop="75998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75471" stop="75955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAAAAACAAGGCGGGAAAATGCTATGTTCGAACAGGGGATAGA</gDNA_template>
            <first_frame> F  Q  G  Q  R  V  C  *  H  P  R  V  H  L  S  I  V  L  G  F  G  L  N  *  Y  Q  S  S  R  Q  L  A  L  L  F  L  H  L  L  C  L  S  C  *  N  V  V  I  L  R  Q  R  L  Q  E  L  L  A  I  L  L  V  C  *  A  *  *  I  *  S  S  L  T  S  Q  F  T  M  I  L  S  K  N  L  L  K  F  L  G  L  L  G  *  I  L  W  Q  F  L  L  H  M  A  *  L  R  M  A  H  L  F  Q  H  H  G  E  V  V  S  L  T  N  F  R  R  I  K  S  S  C  Q  V  L  G  L  M  K  T  K  *  T  L  K  F  L  L  *  M  K  I  Q  M  R  L  L  K  M  E  L  K  V  K  Y  G  F  H  L  L  A  M  L  L  D  I  *  H  I  P  L  *  L  N  K  C  S  T  P  R  L  K  T  R  R  E  N  A  M  F  E  Q  G  I   </first_frame>
            <second_frame>  F  R  G  N  V  C  V  D  I  P  E  Y  I  C  Q  S  S  *  D  L  A  *  I  D  I  R  V  Q  G  N  L  H  S  C  S  F  I  C  F  A  S  R  V  E  T  W  S  Y  *  G  N  G  Y  R  N  C  *  Q  S  Y  *  Y  V  E  L  D  E  F  D  H  R  *  R  A  N  L  Q  *  F  Y  R  R  I  C  *  S  F  *  A  F  W  A  K  S  F  G  N  F  S  F  I  W  L  S  *  E  W  H  I  C  F  N  I  M  E  K  *  *  V  *  Q  I  F  D  V  *  K  A  L  A  K  C  *  A  *  *  R  P  S  R  H  *  N  S  C  C  E  *  R  Y  K  *  D  C  *  R  W  N  *  R  *  N  M  D  F  I  S  *  Q  C  Y  W  I  F  S  T  S  L  S  N  S  T  S  V  Q  R  H  A  *  K  Q  G  G  K  M  L  C  S  N  R  G  *  </second_frame>
            <third_frame>   S  G  A  T  C  V  L  T  S  P  S  T  F  V  N  R  P  R  I  W  L  E  L  I  S  E  F  K  A  T  C  T  P  V  P  S  F  A  L  P  L  V  L  K  R  G  H  T  E  A  T  V  T  G  T  V  S  N  P  I  S  M  L  S  L  M  N  L  I  I  V  N  E  P  I  Y  N  D  S  I  E  E  F  V  E  V  F  R  P  F  G  L  N  P  L  A  I  S  P  S  Y  G  L  A  E  N  G  T  F  V  S  T  S  W  R  S  S  K  F  N  K  F  S  T  Y  K  K  L  L  P  S  A  R  L  D  E  D  Q  V  D  I  E  I  L  V  V  N  E  D  T  N  E  I  V  E  D  G  I  E  G  E  I  W  I  S  S  P  S  N  A  I  G  Y  L  A  H  P  S  L  T  Q  Q  V  F  N  A  T  L  K  N  K  A  G  K  C  Y  V  R  T  G  D  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75472" stop="76077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGATCVLTSPSTFVNRPRIWLELISEFKATCTPVPSFALPLVLKRGHTEATVTGTVSNPISMLSLMNLIIVNEPIYNDSIEEFVEVFRPFGLNPLAISPSYGLAENGTFVSTSWRSSKFNKFSTYKKLLPSARLDEDQVDIEILVVNEDTNEIVEDGIEGEIWISSPSNAIGYLAHPSLTQQVFNATLKNKAGKCYVRTGDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="78728" PGL_stop="78375"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78728" e_stop="78375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78728" e_stop="78375" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78728" stop="78375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78620" stop="78375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226059" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</gDNA_template>
            <first_frame> M  L  K  Y  K  D  F  A  H  K  L  E  S  R  D  R  F  L  R  F  G  C  I  I  I  R  T  L  L  L  L  K  K  I  *  Y  K  K  I  N  L  N  *  F  C  L  I  K  V  L  R  E  K  M  K  L  N  F  L  G  F  G  L  C  L  C  N  L  T  R  N  R  T  *  L  V  F  F  V  F  F  L  G  G  S  M  *  Y  Y  C  N  Y  M  E  P  L  N  *  I  F  I  F  I  N  C  C  T  L  E  P  L  F  I  *  K  F  S  A </first_frame>
            <second_frame>  C  *  S  T  K  I  L  L  T  S  W  S  Q  E  T  G  F  *  G  L  D  A  *  *  *  E  P  F  F  C  *  K  K  Y  N  T  R  R  S  T  L  I  N  F  V  *  L  R  F  *  G  K  K  *  N  *  I  S  W  D  L  V  Y  A  Y  V  I  L  L  G  I  V  R  S  *  F  F  L  F  F  F  W  G  G  L  C  S  I  I  V  T  I  W  N  H  L  I  R  F  L  F  L  L  I  V  V  L  W  N  L  Y  S  S  E  N  F  Q   </second_frame>
            <third_frame>   A  E  V  Q  R  F  C  S  Q  V  G  V  K  R  Q  V  F  K  V  W  M  H  N  N  K  N  P  S  S  A  K  K  N  I  I  Q  E  D  Q  P  *  L  I  L  F  N  *  G  F  E  G  K  N  E  I  K  F  L  G  I  W  F  M  L  M  *  S  Y  *  E  S  Y  V  A  S  F  F  C  F  F  F  G  G  V  Y  V  V  L  L  *  L  Y  G  T  T  *  L  D  F  Y  F  Y  *  L  L  Y  F  G  T  F  I  H  L  K  I  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0124K05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="80188" PGL_stop="80360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80188" e_stop="80360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="80188" e_stop="80360" e_length="173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80188" stop="80360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGATCTATATTTTGAAAACCTGAAATTCTCATCTCTTTTTCCTCATTACCACCACCTAATGCCATGATTTTTTTTTTTTTGTTAATTTAAAAAAAAAAAAAAAGAAACCCTAACCCTATGTCTAATGTTATGTGGGGGGGTGTGAAATTGAAGAAATGAAAGGAGGATGGG</gDNA_template>
            <first_frame> Q  D  L  Y  F  E  N  L  K  F  S  S  L  F  P  H  Y  H  H  L  M  P  *  F  F  F  F  C  *  F  K  K  K  K  K  E  T  L  T  L  C  L  M  L  C  G  G  V  *  N  *  R  N  E  R  R  M   </first_frame>
            <second_frame>  K  I  Y  I  L  K  T  *  N  S  H  L  F  F  L  I  T  T  T  *  C  H  D  F  F  F  F  V  N  L  K  K  K  K  K  K  P  *  P  Y  V  *  C  Y  V  G  G  C  E  I  E  E  M  K  G  G  W  </second_frame>
            <third_frame>   R  S  I  F  *  K  P  E  I  L  I  S  F  S  S  L  P  P  P  N  A  M  I  F  F  F  L  L  I  *  K  K  K  K  R  N  P  N  P  M  S  N  V  M  W  G  G  V  K  L  K  K  *  K  E  D  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0124K05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="92172" PGL_stop="93148"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92172" e_stop="93148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="92172" e_stop="93148" e_length="977"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92172" stop="92601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92459" stop="93148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545666" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATTGTTGTGGCTTTGCTAATATTGTTTTTCAGTAGTAATCTCCTTTGATGAATTGATTGAGTTGCTTCACTTCTCCAGTTTGTTGATCCACCACTGCTTTGACAATATCCGCCACAGAAATCATGCCTACTACCTTCCCATCGATCACTGGAACATGTCGTATGTGGTGCTCTGTGATCATAAAACGTTCCATCACATTTCCATAGTGCATTAAGCATCAGTAACTTCGCGAGTTAGAACTAATACTTACCACTCATGAGCTGCATTGCTTGAAGAATGTTTGTGTCCGATGTGACGGTTATCAGCTTGCTCTGTTGCAATGGTAGTACTAATATTTGAGCACAAAACAGAAGACAGATGAAAAAAAGATAAAGCCAGGAAGACCGATATCTATAGAGTACCTGCTCGGTCATAATATCTCCGACTCTTGTGTATTTAGATGATCTATCCTGTACAATTACCTTTCGCAAATAATCTGTACGTCTCTTGTACAATGTGCATAGATGAATAAGTTCAACATTGTGTGTATTACTAAAGATCAATTAGAGAC</gDNA_template>
            <first_frame> L  A  K  I  K  C  S  I  C  S  Y  Q  F  N  I  *  Y  V  N  Q  *  F  T  R  Y  *  L  N  F  L  R  G  E  F  I  K  V  A  C  Y  L  G  S  R  V  S  P  M  R  C  T  T  A  W  A  W  H  T  P  P  N  L  L  Q  I  F  W  L  I  Y  C  V  M  *  S  N  S  N  L  S  V  D  I  L  C  N  V  F  L  L  C  L  Y  I  L  I  F  I  Y  L  I  L  Y  N  F  K  C  R  V  W  A  *  A  K  L  D  L  Q  R  N  I  I  L  V  K  I  E  H  C  F  *  I  L  F  D  N  L  K  V  N  N  E  Y  C  C  G  F  A  N  I  V  F  Q  *  *  S  P  L  M  N  *  L  S  C  F  T  S  P  V  C  *  S  T  T  A  L  T  I  S  A  T  E  I  M  P  T  T  F  P  S  I  T  G  T  C  R  M  W  C  S  V  I  I  K  R  S  I  T  F  P  *  C  I  K  H  Q  *  L  R  E  L  E  L  I  L  T  T  H  E  L  H  C  L  K  N  V  C  V  R  C  D  G  Y  Q  L  A  L  L  Q  W  *  Y  *  Y  L  S  T  K  Q  K  T  D  E  K  K  I  K  P  G  R  P  I  S  I  E  Y  L  L  G  H  N  I  S  D  S  C  V  F  R  *  S  I  L  Y  N  Y  L  S  Q  I  I  C  T  S  L  V  Q  C  A  *  M  N  K  F  N  I  V  C  I  T  K  D  Q  L  E   </first_frame>
            <second_frame>  W  L  R  S  S  V  V  S  V  L  I  S  L  I  S  D  M  *  I  N  D  S  H  D  I  N  S  I  F  *  G  E  S  S  S  R  *  L  A  T  W  A  L  V  C  R  L  C  V  A  L  L  H  G  P  G  T  P  H  Q  I  Y  F  K  S  F  G  *  Y  I  V  *  C  N  L  I  Q  I  F  R  L  I  Y  C  V  M  C  S  Y  Y  V  Y  T  Y  L  Y  L  F  I  *  F  Y  I  I  L  N  V  V  Y  G  H  K  L  S  *  I  Y  S  E  I  *  F  W  L  K  L  N  T  V  F  R  S  C  L  T  I  *  K  L  T  M  S  I  V  V  A  L  L  I  L  F  F  S  S  N  L  L  *  *  I  D  *  V  A  S  L  L  Q  F  V  D  P  P  L  L  *  Q  Y  P  P  Q  K  S  C  L  L  P  S  H  R  S  L  E  H  V  V  C  G  A  L  *  S  *  N  V  P  S  H  F  H  S  A  L  S  I  S  N  F  A  S  *  N  *  Y  L  P  L  M  S  C  I  A  *  R  M  F  V  S  D  V  T  V  I  S  L  L  C  C  N  G  S  T  N  I  *  A  Q  N  R  R  Q  M  K  K  R  *  S  Q  E  D  R  Y  L  *  S  T  C  S  V  I  I  S  P  T  L  V  Y  L  D  D  L  S  C  T  I  T  F  R  K  *  S  V  R  L  L  Y  N  V  H  R  *  I  S  S  T  L  C  V  L  L  K  I  N  *  R  </second_frame>
            <third_frame>   G  *  D  Q  V  *  Y  L  F  L  S  V  *  Y  L  I  C  E  S  M  I  H  T  I  L  T  Q  F  F  K  G  R  V  H  Q  G  S  L  L  L  G  L  S  C  V  A  Y  A  L  H  Y  C  M  G  L  A  H  P  T  K  S  T  S  N  L  L  V  D  I  L  C  N  V  I  *  F  K  S  F  G  *  Y  I  V  *  C  V  L  I  M  F  I  H  T  Y  I  Y  L  F  N  F  I  *  F  *  M  S  C  M  G  I  S  *  V  R  F  T  A  K  Y  N  F  G  *  N  *  T  L  F  L  D  L  V  *  Q  F  E  S  *  Q  *  V  L  L  W  L  C  *  Y  C  F  S  V  V  I  S  F  D  E  L  I  E  L  L  H  F  S  S  L  L  I  H  H  C  F  D  N  I  R  H  R  N  H  A  Y  Y  L  P  I  D  H  W  N  M  S  Y  V  V  L  C  D  H  K  T  F  H  H  I  S  I  V  H  *  A  S  V  T  S  R  V  R  T  N  T  Y  H  S  *  A  A  L  L  E  E  C  L  C  P  M  *  R  L  S  A  C  S  V  A  M  V  V  L  I  F  E  H  K  T  E  D  R  *  K  K  D  K  A  R  K  T  D  I  Y  R  V  P  A  R  S  *  Y  L  R  L  L  C  I  *  M  I  Y  P  V  Q  L  P  F  A  N  N  L  Y  V  S  C  T  M  C  I  D  E  *  V  Q  H  C  V  Y  Y  *  R  S  I  R  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92618" stop="92812"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCFSVVISFDELIELLHFSSLLIHHCFDNIRHRNHAYYLPIDHWNMSYVVLCDHKTFHHISIVH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="103574" PGL_stop="105116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103574" e_stop="103720"/>
            <exon e_start="103826" e_stop="103950"/>
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              <exon start="104055" stop="104155"/>
              <exon start="104670" stop="104924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103872" stop="103950"/>
              <exon start="104055" stop="104155"/>
              <exon start="104670" stop="105044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103880" stop="103950"/>
              <exon start="104055" stop="104155"/>
              <exon start="104670" stop="105116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103885" stop="103950"/>
              <exon start="104055" stop="104155"/>
              <exon start="104670" stop="105005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104123" stop="104155"/>
              <exon start="104670" stop="105057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241775" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCACCAAATTTTCATATAACAAGTTGAGTGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA : TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG : GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG : GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAATATTTTGATGTGATATATTTTTTTCTGCAAATTTTATAAAATTTAATTTGTAGAATGTAA</gDNA_template>
            <first_frame> F  P  P  N  F  H  I  T  S  *  V  K  L  I  N  C  V  L  S  L  I  K  K  L  I  S  N  K  K  R  *  L  W  V  L  L  W  Q  V  G  T  L  L  F  L  I  L  K  L  :  *  N  Y  E  Q  I  S  H  *  Q  R  K  R  *  M  H  I  G  D  Q  K  N  *  L  K  K  S  I  K  N  I  S  L  R  Y  P  L  E  A  K  N  R :   R  I  L  Y  L  R  R  Q  L  K  Q  R  K  K  V  F  L  I  W  K  M  R  K  V  W  I  N  *  S  G  K  M  D   : G  G  *  V  A  I  G  H  I  *  M  S  H  Q  *  K  Y  E  K  V  Q  L  T  N  T  C  H  N  F  T  *  P  T  W  L  L  G  P  T  L  N  P  V  Q  P  E  S  T  L  E  P  S  F  G  F  R  P  V  C  *  *  V  L  V  *  Y  F  F  *  V  N  F  N  F  F  L  *  Q  I  T  F  N  F  I  C  E  S  I  C  I  *  V  D  I  *  S  L  R  *  E  M  S  I  L  V  M  L  G  H  T  Y  M  S  L  *  Y  I  F  C  A  F  F  D  K  S  *  S  I  L  I  F  *  C  D  I  F  F  S  A  N  F  I  K  F  N  L  *  N  V  </first_frame>
            <second_frame>  F  H  Q  I  F  I  *  Q  V  E  *  N  *  L  T  V  C  *  V  *  L  R  S  *  L  A  T  K  R  D  N  Y  G  F  S  Y  G  R  L  G  L  S  C  F  *  S  S  S  Y :   E  I  T  N  K  *  V  I  N  K  E  R  D  R  C  I  L  E  I  K  K  T  N  *  R  R  A  S  K  I  Y  L  Y  V  I  P  S  K  P  K  T   : G  E  Y  C  I  *  G  G  N  *  N  S  G  R  K  S  F  *  F  G  K  *  G  K  F  G  S  T  N  Q  E  K  W  M  :  V  D  K  *  Q  L  G  T  F  K  *  A  T  S  R  S  T  R  R  S  S  L  Q  I  R  V  T  I  S  R  S  Q  H  G  Y  W  V  Q  H  *  T  R  S  S  R  N  Q  R  L  N  R  R  L  A  L  D  R  F  A  N  K  Y  *  Y  S  T  F  F  R  L  I  L  I  F  F  Y  D  K  L  L  L  I  L  F  A  K  V  F  V  F  E  L  I  F  R  V  C  V  K  R  C  R  Y  L  *  C  W  D  I  H  T  C  R  C  N  I  F  F  V  L  S  S  I  K  V  K  V  Y  *  Y  F  D  V  I  Y  F  F  L  Q  I  L  *  N  L  I  C  R  M  * </second_frame>
            <third_frame>   S  T  K  F  S  Y  N  K  L  S  E  I  N  *  L  C  V  K  F  N  *  E  V  N  *  Q  Q  K  E  I  I  M  G  S  L  M  A  G  W  D  S  P  V  S  D  P  Q  A   : M  K  L  R  T  N  K  S  L  T  K  K  E  I  D  A  Y  W  R  S  K  K  L  I  E  E  E  H  Q  K  Y  I  S  T  L  S  P  R  S  Q  K  Q  :  A  N  I  V  F  E  E  A  T  K  T  A  E  E  S  L  S  N  L  E  N  E  E  S  L  D  Q  L  I  R  K  N  G  W :   W  I  S  S  N  W  A  H  L  N  E  P  P  V  E  V  R  E  G  P  A  Y  K  Y  V  S  Q  F  H  V  A  N  M  A  T  G  S  N  T  K  P  G  P  A  G  I  N  A  *  T  V  V  W  L  *  T  G  L  L  I  S  T  S  I  V  L  F  L  G  *  F  *  F  F  F  M  T  N  Y  F  *  F  Y  L  R  K  Y  L  Y  L  S  *  Y  L  E  F  A  L  R  D  V  D  T  C  N  V  G  T  Y  I  H  V  V  V  I  Y  F  L  C  F  L  R  *  K  L  K  Y  I  N  I  L  M  *  Y  I  F  F  C  K  F  Y  K  I  *  F  V  E  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103651" stop="103720"/>
                    <exon start="103826" stop="103950"/>
                    <exon start="104055" stop="104155"/>
                    <exon start="104670" stop="104817"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQKEIIMGSLMAGWDSPVSDPQAMKLRTNKSLTKKEIDAYWRSKKLIEEEHQKYISTLSPRSQKQANIVFEEATKTAEESLSNLENEESLDQLIRKNGWWISSNWAHLNEPPVEVREGPAYKYVSQFHVANMATGSNTKPGPAGINA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="111181" PGL_stop="110740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111181" e_stop="110740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="111181" e_stop="110740" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111181" stop="110740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCTCTCCATGTAAATTAAGATTTTTTTTATTTCATTGTTAATCTTTCTATTATTGTAGGATCGAAATTATTTTGTGGCATAACTCAACGAAGAAGGCTCTTGGATGTTAGTTTGCCAAAAGGGATGTCGGATAAGAGTAACAAAAATTGTGCATTGATTATACATTATTATTTTTATGTATTTTCTTATGATTAAGGTCCTAAGGAACTAAGAAAGATAGATGTGTTGTGTGTTCTCTCCATGTAACTCAAGATTATTTTTTTTATTTTATTGTTAATATTTATAAATATTATTATTATTATAGGATCACATTCATCTTTTAGCATAACTCGATGAAGAAGACTTTTAAATGTTGATTAGTCTGTCAAAAAGGATGTAGGACAAAAGTTCAAAAAAACTGTGCATCGATCTATATTTTTATTTTTCATTTATTTTCTT</gDNA_template>
            <first_frame> L  F  S  P  C  K  L  R  F  F  L  F  H  C  *  S  F  Y  Y  C  R  I  E  I  I  L  W  H  N  S  T  K  K  A  L  G  C  *  F  A  K  R  D  V  G  *  E  *  Q  K  L  C  I  D  Y  T  L  L  F  L  C  I  F  L  *  L  R  S  *  G  T  K  K  D  R  C  V  V  C  S  L  H  V  T  Q  D  Y  F  F  Y  F  I  V  N  I  Y  K  Y  Y  Y  Y  Y  R  I  T  F  I  F  *  H  N  S  M  K  K  T  F  K  C  *  L  V  C  Q  K  G  C  R  T  K  V  Q  K  N  C  A  S  I  Y  I  F  I  F  H  L  F  S  </first_frame>
            <second_frame>  C  S  L  H  V  N  *  D  F  F  Y  F  I  V  N  L  S  I  I  V  G  S  K  L  F  C  G  I  T  Q  R  R  R  L  L  D  V  S  L  P  K  G  M  S  D  K  S  N  K  N  C  A  L  I  I  H  Y  Y  F  Y  V  F  S  Y  D  *  G  P  K  E  L  R  K  I  D  V  L  C  V  L  S  M  *  L  K  I  I  F  F  I  L  L  L  I  F  I  N  I  I  I  I  I  G  S  H  S  S  F  S  I  T  R  *  R  R  L  L  N  V  D  *  S  V  K  K  D  V  G  Q  K  F  K  K  T  V  H  R  S  I  F  L  F  F  I  Y  F  L </second_frame>
            <third_frame>   V  L  S  M  *  I  K  I  F  F  I  S  L  L  I  F  L  L  L  *  D  R  N  Y  F  V  A  *  L  N  E  E  G  S  W  M  L  V  C  Q  K  G  C  R  I  R  V  T  K  I  V  H  *  L  Y  I  I  I  F  M  Y  F  L  M  I  K  V  L  R  N  *  E  R  *  M  C  C  V  F  S  P  C  N  S  R  L  F  F  L  F  Y  C  *  Y  L  *  I  L  L  L  L  *  D  H  I  H  L  L  A  *  L  D  E  E  D  F  *  M  L  I  S  L  S  K  R  M  *  D  K  S  S  K  K  L  C  I  D  L  Y  F  Y  F  S  F  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0124K05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="112098" PGL_stop="114151"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112098" e_stop="112364"/>
            <exon e_start="112456" e_stop="112590"/>
            <exon e_start="113059" e_stop="113296"/>
            <exon e_start="113394" e_stop="113597"/>
            <exon e_start="113681" e_stop="114151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.992" acc_prob="0.581" e_score="1.000"/>
          <exon-intron don_prob="0.651" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="112098" e_stop="112364" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112365" i_stop="112455" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112456" e_stop="112590" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.581">
            <gDNA_intron_boundary i_start="112591" i_stop="113058" i_length="468"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113059" e_stop="113296" e_length="238"/>
          </exon>
          <intron i_serial="3" don_prob="0.651" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113297" i_stop="113393" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113394" e_stop="113597" e_length="204"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="113598" i_stop="113680" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="113681" e_stop="114151" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112098" stop="112364"/>
              <exon start="112456" stop="112590"/>
              <exon start="113059" stop="113296"/>
              <exon start="113394" stop="113597"/>
              <exon start="113681" stop="114151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112130" stop="112364"/>
              <exon start="112456" stop="112590"/>
              <exon start="113059" stop="113221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTACACAAAACAACACAACTAAATTCTTGAGAAAGTTCTTTAATTTTCAAATCAAAATCTCTTTTAAGTTTTATTTTTATCAAATGGCTGAGAAAAGCAAAGTTTTGATTATTGGAGGAACAGGGTATATTGGTAAATTTGTAGTTGAAGCTAGTGCAAAATCTGGACACCCAACTTTTGCTTTAGTTAGAGAGACCACAGTTTCTGATCCTGATAAGGGCAAAATTGTTGAAAATTTCAAGAATTTGGGTGTCACTATTATTAAT : GGTGATTTGTATGATCATGAGAGTTTGCTGAAGGCTATAAAACAAGTGGATGTGGTGATATCAACTGTTGGTGCAATGCAATTGGCTGATCAAGTTAAGATTATTGATGCTATTAAAGAAGCTGGCAATATTAAG : AGGTTCTTCCCTTCGGAGTTTGGTATGGATGTCGATAAGATCAATGCTGTGGAGCCAGCAAAGTCTACATTTGCTGTGAAAGTTCAAATCCGAAGAGCTATTGAGGCTGCAGAAATTCCCTATACTAATGTCTCATGTAACTATTTTGCTGGTTATTTCTTACCAACTTTGGTCCAGCCAGGAGTCACTGCTCCTCCTCGAGACAAAGTCATCATTCCCGGAGATGGAAATGTTAAGG : CTGTATTCAATGAAGAACATGATATTGGCACCTACACCATTAAGGCTATTGATGACCCGAGAACGTTGAACAAGACCCTTTACATCAGGCCTCTCAAGAACACCTTATCGTTCAACGAGCTTGTGGCTATATGGGAGAAACTGATTGGTAAAACTCTCGAGAAAATCTACGTTCCAGAGGAGCAAATTCTCAAAGACATCCAGA : CATCTCCAATACCAATCAATATCATACTAGCAATCAACCACTCAACATTCGTGAAGGGTGATCAAACCAATTTTGAGATAGAGCCATCGTTTGGGGTAGAGGCCTCGGAACTTTATCCAGATGTTAAGTACACTACAGTGGAGGAGTACCTTGGCCACTTTGTCTAAACCACACCTTTGAGGTCTCCGATCGTTCAAATAAACTGTTAGATGATGAGTGTTATCAGACATTTTATCTGGAAGTATGAGTACTTGTTCACTATGTCATCGGAGACACGTTGAATGGTATGTTTTTAAGTCTGTTTTTAGTGTCCACACTGTGTAGTACTATAATGAAGCTACAGAAAATGGATTGTTGCATTGTTGCTCTACCATCTTGTACAAGTTTTAAGGTGTGATGTAATATGCAAAAGCTTGTTGTCAATAAGGATCAATCAAAGAGGACTCTATTTCAGTTTTCTTATGAATTCAG</gDNA_template>
            <first_frame> C  T  Q  N  N  T  T  K  F  L  R  K  F  F  N  F  Q  I  K  I  S  F  K  F  Y  F  Y  Q  M  A  E  K  S  K  V  L  I  I  G  G  T  G  Y  I  G  K  F  V  V  E  A  S  A  K  S  G  H  P  T  F  A  L  V  R  E  T  T  V  S  D  P  D  K  G  K  I  V  E  N  F  K  N  L  G  V  T  I  I  N  :  G  D  L  Y  D  H  E  S  L  L  K  A  I  K  Q  V  D  V  V  I  S  T  V  G  A  M  Q  L  A  D  Q  V  K  I  I  D  A  I  K  E  A  G  N  I  K  :  R  F  F  P  S  E  F  G  M  D  V  D  K  I  N  A  V  E  P  A  K  S  T  F  A  V  K  V  Q  I  R  R  A  I  E  A  A  E  I  P  Y  T  N  V  S  C  N  Y  F  A  G  Y  F  L  P  T  L  V  Q  P  G  V  T  A  P  P  R  D  K  V  I  I  P  G  D  G  N  V  K   : A  V  F  N  E  E  H  D  I  G  T  Y  T  I  K  A  I  D  D  P  R  T  L  N  K  T  L  Y  I  R  P  L  K  N  T  L  S  F  N  E  L  V  A  I  W  E  K  L  I  G  K  T  L  E  K  I  Y  V  P  E  E  Q  I  L  K  D  I  Q   : T  S  P  I  P  I  N  I  I  L  A  I  N  H  S  T  F  V  K  G  D  Q  T  N  F  E  I  E  P  S  F  G  V  E  A  S  E  L  Y  P  D  V  K  Y  T  T  V  E  E  Y  L  G  H  F  V  *  T  T  P  L  R  S  P  I  V  Q  I  N  C  *  M  M  S  V  I  R  H  F  I  W  K  Y  E  Y  L  F  T  M  S  S  E  T  R  *  M  V  C  F  *  V  C  F  *  C  P  H  C  V  V  L  *  *  S  Y  R  K  W  I  V  A  L  L  L  Y  H  L  V  Q  V  L  R  C  D  V  I  C  K  S  L  L  S  I  R  I  N  Q  R  G  L  Y  F  S  F  L  M  N  S  </first_frame>
            <second_frame>  V  H  K  T  T  Q  L  N  S  *  E  S  S  L  I  F  K  S  K  S  L  L  S  F  I  F  I  K  W  L  R  K  A  K  F  *  L  L  E  E  Q  G  I  L  V  N  L  *  L  K  L  V  Q  N  L  D  T  Q  L  L  L  *  L  E  R  P  Q  F  L  I  L  I  R  A  K  L  L  K  I  S  R  I  W  V  S  L  L  L  M :   V  I  C  M  I  M  R  V  C  *  R  L  *  N  K  W  M  W  *  Y  Q  L  L  V  Q  C  N  W  L  I  K  L  R  L  L  M  L  L  K  K  L  A  I  L  R :   G  S  S  L  R  S  L  V  W  M  S  I  R  S  M  L  W  S  Q  Q  S  L  H  L  L  *  K  F  K  S  E  E  L  L  R  L  Q  K  F  P  I  L  M  S  H  V  T  I  L  L  V  I  S  Y  Q  L  W  S  S  Q  E  S  L  L  L  L  E  T  K  S  S  F  P  E  M  E  M  L  R  :  L  Y  S  M  K  N  M  I  L  A  P  T  P  L  R  L  L  M  T  R  E  R  *  T  R  P  F  T  S  G  L  S  R  T  P  Y  R  S  T  S  L  W  L  Y  G  R  N  *  L  V  K  L  S  R  K  S  T  F  Q  R  S  K  F  S  K  T  S  R  :  H  L  Q  Y  Q  S  I  S  Y  *  Q  S  T  T  Q  H  S  *  R  V  I  K  P  I  L  R  *  S  H  R  L  G  *  R  P  R  N  F  I  Q  M  L  S  T  L  Q  W  R  S  T  L  A  T  L  S  K  P  H  L  *  G  L  R  S  F  K  *  T  V  R  *  *  V  L  S  D  I  L  S  G  S  M  S  T  C  S  L  C  H  R  R  H  V  E  W  Y  V  F  K  S  V  F  S  V  H  T  V  *  Y  Y  N  E  A  T  E  N  G  L  L  H  C  C  S  T  I  L  Y  K  F  *  G  V  M  *  Y  A  K  A  C  C  Q  *  G  S  I  K  E  D  S  I  S  V  F  L  *  I  Q </second_frame>
            <third_frame>   Y  T  K  Q  H  N  *  I  L  E  K  V  L  *  F  S  N  Q  N  L  F  *  V  L  F  L  S  N  G  *  E  K  Q  S  F  D  Y  W  R  N  R  V  Y  W  *  I  C  S  *  S  *  C  K  I  W  T  P  N  F  C  F  S  *  R  D  H  S  F  *  S  *  *  G  Q  N  C  *  K  F  Q  E  F  G  C  H  Y  Y  *   : W  *  F  V  *  S  *  E  F  A  E  G  Y  K  T  S  G  C  G  D  I  N  C  W  C  N  A  I  G  *  S  S  *  D  Y  *  C  Y  *  R  S  W  Q  Y  *   : E  V  L  P  F  G  V  W  Y  G  C  R  *  D  Q  C  C  G  A  S  K  V  Y  I  C  C  E  S  S  N  P  K  S  Y  *  G  C  R  N  S  L  Y  *  C  L  M  *  L  F  C  W  L  F  L  T  N  F  G  P  A  R  S  H  C  S  S  S  R  Q  S  H  H  S  R  R  W  K  C  *  G :   C  I  Q  *  R  T  *  Y  W  H  L  H  H  *  G  Y  *  *  P  E  N  V  E  Q  D  P  L  H  Q  A  S  Q  E  H  L  I  V  Q  R  A  C  G  Y  M  G  E  T  D  W  *  N  S  R  E  N  L  R  S  R  G  A  N  S  Q  R  H  P  D :   I  S  N  T  N  Q  Y  H  T  S  N  Q  P  L  N  I  R  E  G  *  S  N  Q  F  *  D  R  A  I  V  W  G  R  G  L  G  T  L  S  R  C  *  V  H  Y  S  G  G  V  P  W  P  L  C  L  N  H  T  F  E  V  S  D  R  S  N  K  L  L  D  D  E  C  Y  Q  T  F  Y  L  E  V  *  V  L  V  H  Y  V  I  G  D  T  L  N  G  M  F  L  S  L  F  L  V  S  T  L  C  S  T  I  M  K  L  Q  K  M  D  C  C  I  V  A  L  P  S  C  T  S  F  K  V  *  C  N  M  Q  K  L  V  V  N  K  D  Q  S  K  R  T  L  F  Q  F  S  Y  E  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112098" stop="112364"/>
                    <exon start="112456" stop="112590"/>
                    <exon start="113059" stop="113296"/>
                    <exon start="113394" stop="113597"/>
                    <exon start="113681" stop="113847"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTQNNTTKFLRKFFNFQIKISFKFYFYQMAEKSKVLIIGGTGYIGKFVVEASAKSGHPTFALVRETTVSDPDKGKIVENFKNLGVTIINGDLYDHESLLKAIKQVDVVISTVGAMQLADQVKIIDAIKEAGNIKRFFPSEFGMDVDKINAVEPAKSTFAVKVQIRRAIEAAEIPYTNVSCNYFAGYFLPTLVQPGVTAPPRDKVIIPGDGNVKAVFNEEHDIGTYTIKAIDDPRTLNKTLYIRPLKNTLSFNELVAIWEKLIGKTLEKIYVPEEQILKDIQTSPIPINIILAINHSTFVKGDQTNFEIEPSFGVEASELYPDVKYTTVEEYLGHFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="116780" PGL_stop="123006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116780" e_stop="117052"/>
            <exon e_start="119248" e_stop="119391"/>
            <exon e_start="120909" e_stop="121034"/>
            <exon e_start="121104" e_stop="121255"/>
            <exon e_start="122092" e_stop="123006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116780" e_stop="117052" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.949">
            <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119248" e_stop="119391" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120909" e_stop="121034" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.935">
            <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121104" e_stop="121255" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="121256" i_stop="122091" i_length="836"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122092" e_stop="123006" e_length="915"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116780" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="121104" stop="121255"/>
              <exon start="122092" stop="122594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116842" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="120995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116852" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="121104" stop="121255"/>
              <exon start="122092" stop="122140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116854" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="121104" stop="121127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116862" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116871" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="121104" stop="121134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116876" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="121104" stop="121212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116876" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116883" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="121104" stop="121255"/>
              <exon start="122092" stop="122311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116893" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="121104" stop="121255"/>
              <exon start="122092" stop="122357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116893" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="121104" stop="121187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116894" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="121104" stop="121255"/>
              <exon start="122092" stop="122203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116963" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="121104" stop="121255"/>
              <exon start="122092" stop="122279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116991" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="121104" stop="121255"/>
              <exon start="122092" stop="122407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121149" stop="121255"/>
              <exon start="122092" stop="122684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122149" stop="122704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122149" stop="122704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122149" stop="122704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122149" stop="122703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122163" stop="122667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122240" stop="122684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122264" stop="122692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122267" stop="122568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122454" stop="123006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267750" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC : TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG : GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG : GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG : GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</gDNA_template>
            <first_frame> R  H  V  V  F  T  I  L  P  Y  Q  L  L  C  G  K  P  S  F  L  T  Q  S  S  L  L  L  H  K  H  L  D  C  T  A  L  L  I  R  K  R  A  K  P  K  E  E  E  G  G  G  Q  T  W  E  P  S  G  K  Q  F  T  P  W  D  P  S  F  E  R  P  A  K  L  L  I  A  S  E  I  A  Y  K  A  A  P  T  *  R  N  T  :  C  P  G  I  G  L  L  *  T  Y  S  I  K  L  R  W  W  I  R  M  Y  L  *  L  Q  V  P  Q  S  L  E  M  S  M  W  D  A  I  H  L  F  G  M  D  V  Y  *  E  :  V  M  L  T  A  S  V  S  D  L  V  P  I  Y  R  T  T  P  L  F  M  W  P  N  Q  I  *  V  K  R  C  C  P  P  S  *  G  T  M  L  L  L  :  V  I  V  L  L  Y  M  A  A  P  L  R  M  R  P  S  L  V  W  G  P  H  C  L  M  V  F  M  *  R  N  M  P  W  L  L  Q  E  P  L  *  N  R  T  Q  G  F  P  P  E  R :   Y  G  Q  A  I  P  L  S  F  *  G  S  *  L  M  K  R  *  P  S  L  L  S  Q  Q  P  T  T  V  T  L  L  V  S  M  Q  L  R  I  P  S  P  L  T  K  L  N  L  K  R  C  F  V  R  S  M  P  N  V  M  R  N  M  I  L  *  L  V  L  S  V  K  H  L  P  S  L  Y  F  L  I  I  S  S  P  K  K  L  L  R  A  S  P  N  E  I  S  A  Q  A  T  L  S  F  F  A  F  Q  R  F  I  L  H  R  E  H  L  Y  G  E  Q  S  W  I  L  A  V  T  L  P  N  N  I  K  L  I  G  *  H  R  Y  V  T  A  L  *  L  R  L  L  P  L  I  S  Q  K  F  F  S  L  E  K  E  V  T  P  T  S  A  C  N  S  E  K  S  F  S  I  D  L  F  G  K  L  L  L  E  *  H  K  T  L  T  A  H  S  K  H  I  S  S  S  V  E  A  F  M  F  S  N  A  L  L  V  *  D  S  M  H  Y  *  D  P  *  L  S  K  H  S  A  C  G  E  I  N  D  L  K  P  R  H  V  S  Y  S  Y  I  N  Y  N  I  I  K  V  E  M  I  G  *  L  G  Y  E  E  P  K  D  E  *  F  P  R  K  F  S  L  V  L  L  C  F  Y  N  D  T  V  Y  E  *  L  A  S  V  E  L  F  G  F  E  C  S  H  L  W   </first_frame>
            <second_frame>  G  M  W  Y  S  L  F  C  P  T  N  Y  S  V  E  S  L  H  F  S  L  N  R  P  F  C  Y  T  N  T  L  T  A  Q  L  Y  *  S  E  R  G  L  N  R  K  K  K  K  E  E  V  K  H  G  N  P  R  E  S  N  L  L  P  G  I  H  R  S  S  D  R  Q  S  S  *  S  R  R  K  S  P  T  R  Q  L  P  H  R  G  T  P :   V  Q  A  S  D  S  Y  E  R  I  R  *  S  S  G  G  G  *  G  C  I  C  S  S  R  C  L  S  H  W  R  C  P  C  G  T  Q  F  I  Y  L  V  W  M  C  T  K  R :   *  C  *  Q  H  Q  C  R  I  W  Y  Q  Y  T  G  Q  L  P  C  S  C  G  Q  I  K  Y  K  S  K  G  A  A  H  H  H  R  E  Q  C  Y  C  W :   S  *  C  C  C  T  W  L  H  H  *  G  *  G  L  H  W  Y  G  G  H  T  A  *  W  C  S  C  R  E  T  C  H  G  C  C  R  S  P  C  E  T  E  H  K  D  S  L  R  R   : G  M  G  R  Q  S  R  *  V  S  E  E  A  N  *  *  R  D  S  L  H  C  S  V  S  N  Q  L  L  *  P  C  S  C  P  C  S  *  E  F  Q  V  L  *  R  N  *  I  *  K  D  A  S  *  E  V  C  Q  T  *  *  G  I  *  F  Y  D  W  C  C  P  *  N  T  S  R  A  C  T  S  *  *  Y  P  P  R  K  S  C  *  E  H  R  P  M  R  S  V  P  K  Q  L  S  L  F  L  L  S  R  D  L  F  Y  T  V  S  I  C  M  E  N  S  H  G  Y  W  L  L  P  F  Q  I  I  S  N  L  L  D  S  I  G  T  S  L  L  C  S  *  D  F  C  P  L  F  P  R  N  S  S  A  W  K  R  K  L  R  P  Q  V  L  V  T  L  R  N  H  F  Q  *  I  Y  L  V  N  C  Y  W  N  N  I  K  H  *  Q  H  I  P  N  I  F  L  H  Q  L  K  H  L  C  L  A  M  P  F  L  F  E  I  P  C  I  I  E  I  H  D  *  V  S  T  V  H  V  G  K  S  M  T  *  S  Q  G  M  L  A  I  V  I  L  I  I  I  L  *  R  *  R  *  L  A  D  W  G  M  K  S  Q  K  M  S  N  F  P  V  N  S  A  L  S  Y  C  V  F  I  M  T  L  Y  M  N  D  W  H  L  L  N  C  L  V  L  N  V  V  I  F  G  </second_frame>
            <third_frame>   A  C  G  I  H  Y  S  A  L  P  I  T  L  W  K  A  F  I  S  H  S  I  V  P  F  A  T  Q  T  P  *  L  H  S  S  T  D  Q  K  E  G  *  T  E  R  R  R  R  R  R  S  N  M  G  T  L  G  K  A  I  Y  S  L  G  S  I  V  R  A  T  G  K  A  L  D  R  V  G  N  R  L  Q  G  S  S  H  I  E  E  H   : L  S  R  H  R  T  L  M  N  V  F  D  K  A  P  V  V  D  K  D  V  F  V  A  P  G  A  S  V  I  G  D  V  H  V  G  R  N  S  S  I  W  Y  G  C  V  L  R   : G  D  V  N  S  I  S  V  G  S  G  T  N  I  Q  D  N  S  L  V  H  V  A  K  S  N  I  S  Q  K  V  L  P  T  I  I  G  N  N  V  T  V   : G  H  S  A  V  V  H  G  C  T  I  E  D  E  A  F  I  G  M  G  A  T  L  L  D  G  V  H  V  E  K  H  A  M  V  A  A  G  A  L  V  K  Q  N  T  R  I  P  S  G  E  :  V  W  A  G  N  P  A  K  F  L  R  K  L  T  D  E  E  I  A  F  I  A  Q  S  A  T  N  Y  C  N  L  A  R  V  H  A  A  E  N  S  K  S  F  D  E  I  E  F  E  K  M  L  R  K  K  Y  A  K  R  D  E  E  Y  D  S  M  I  G  V  V  R  E  T  P  P  E  L  V  L  P  D  N  I  L  P  E  K  A  A  K  S  I  A  Q  *  D  Q  C  P  S  N  S  L  F  F  C  F  P  E  I  Y  F  T  P  *  A  S  V  W  R  T  V  M  D  I  G  C  Y  P  S  K  *  Y  Q  T  Y  W  I  A  S  V  R  H  C  F  V  V  K  T  F  A  P  Y  F  P  E  I  L  Q  L  G  K  G  S  Y  A  H  K  C  L  *  L  *  E  I  I  F  N  R  F  I  W  *  I  V  I  G  I  T  *  N  I  D  S  T  F  Q  T  Y  F  F  I  S  *  S  I  Y  V  *  Q  C  P  S  C  L  R  F  H  A  L  L  R  S  M  T  K  *  A  Q  C  M  W  G  N  Q  *  P  K  A  K  A  C  *  L  *  L  Y  *  L  *  Y  Y  K  G  R  D  D  W  L  I  G  V  *  R  A  K  R  *  V  I  S  P  *  I  Q  P  C  L  I  V  F  L  *  *  H  C  I  *  M  I  G  I  C  *  I  V  W  F  *  M  *  S  S  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116908" stop="117052"/>
                    <exon start="119248" stop="119391"/>
                    <exon start="120909" stop="121034"/>
                    <exon start="121104" stop="121255"/>
                    <exon start="122092" stop="122376"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERRRRRRSNMGTLGKAIYSLGSIVRATGKALDRVGNRLQGSSHIEEHLSRHRTLMNVFDKAPVVDKDVFVAPGASVIGDVHVGRNSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNISQKVLPTIIGNNVTVGHSAVVHGCTIEDEAFIGMGATLLDGVHVEKHAMVAAGALVKQNTRIPSGEVWAGNPAKFLRKLTDEEIAFIAQSATNYCNLARVHAAENSKSFDEIEFEKMLRKKYAKRDEEYDSMIGVVRETPPELVLPDNILPEKAAKSIAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="116842" e_stop="117052"/>
            <exon e_start="119248" e_stop="119391"/>
            <exon e_start="120909" e_stop="121034"/>
            <exon e_start="122092" e_stop="123006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116842" e_stop="117052" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.949">
            <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119248" e_stop="119391" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120909" e_stop="121034" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.986">
            <gDNA_intron_boundary i_start="121035" i_stop="122091" i_length="1057"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122092" e_stop="123006" e_length="915"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116842" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="120995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116862" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116876" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116950" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="122092" stop="122176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122149" stop="122704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122149" stop="122704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122149" stop="122704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122149" stop="122703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122163" stop="122667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122240" stop="122684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122264" stop="122692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122267" stop="122568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122454" stop="123006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267750" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC : TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG : GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG : GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</gDNA_template>
            <first_frame> S  I  V  P  F  A  T  Q  T  P  *  L  H  S  S  T  D  Q  K  E  G  *  T  E  R  R  R  R  R  R  S  N  M  G  T  L  G  K  A  I  Y  S  L  G  S  I  V  R  A  T  G  K  A  L  D  R  V  G  N  R  L  Q  G  S  S  H  I  E  E  H   : L  S  R  H  R  T  L  M  N  V  F  D  K  A  P  V  V  D  K  D  V  F  V  A  P  G  A  S  V  I  G  D  V  H  V  G  R  N  S  S  I  W  Y  G  C  V  L  R   : G  D  V  N  S  I  S  V  G  S  G  T  N  I  Q  D  N  S  L  V  H  V  A  K  S  N  I  S  Q  K  V  L  P  T  I  I  G  N  N  V  T  V   : G  M  G  R  Q  S  R  *  V  S  E  E  A  N  *  *  R  D  S  L  H  C  S  V  S  N  Q  L  L  *  P  C  S  C  P  C  S  *  E  F  Q  V  L  *  R  N  *  I  *  K  D  A  S  *  E  V  C  Q  T  *  *  G  I  *  F  Y  D  W  C  C  P  *  N  T  S  R  A  C  T  S  *  *  Y  P  P  R  K  S  C  *  E  H  R  P  M  R  S  V  P  K  Q  L  S  L  F  L  L  S  R  D  L  F  Y  T  V  S  I  C  M  E  N  S  H  G  Y  W  L  L  P  F  Q  I  I  S  N  L  L  D  S  I  G  T  S  L  L  C  S  *  D  F  C  P  L  F  P  R  N  S  S  A  W  K  R  K  L  R  P  Q  V  L  V  T  L  R  N  H  F  Q  *  I  Y  L  V  N  C  Y  W  N  N  I  K  H  *  Q  H  I  P  N  I  F  L  H  Q  L  K  H  L  C  L  A  M  P  F  L  F  E  I  P  C  I  I  E  I  H  D  *  V  S  T  V  H  V  G  K  S  M  T  *  S  Q  G  M  L  A  I  V  I  L  I  I  I  L  *  R  *  R  *  L  A  D  W  G  M  K  S  Q  K  M  S  N  F  P  V  N  S  A  L  S  Y  C  V  F  I  M  T  L  Y  M  N  D  W  H  L  L  N  C  L  V  L  N  V  V  I  F  G  </first_frame>
            <second_frame>  Q  S  S  L  L  L  H  K  H  L  D  C  T  A  L  L  I  R  K  R  A  K  P  K  E  E  E  G  G  G  Q  T  W  E  P  S  G  K  Q  F  T  P  W  D  P  S  F  E  R  P  A  K  L  L  I  A  S  E  I  A  Y  K  A  A  P  T  *  R  N  T  :  C  P  G  I  G  L  L  *  T  Y  S  I  K  L  R  W  W  I  R  M  Y  L  *  L  Q  V  P  Q  S  L  E  M  S  M  W  D  A  I  H  L  F  G  M  D  V  Y  *  E  :  V  M  L  T  A  S  V  S  D  L  V  P  I  Y  R  T  T  P  L  F  M  W  P  N  Q  I  *  V  K  R  C  C  P  P  S  *  G  T  M  L  L  L  :  V  W  A  G  N  P  A  K  F  L  R  K  L  T  D  E  E  I  A  F  I  A  Q  S  A  T  N  Y  C  N  L  A  R  V  H  A  A  E  N  S  K  S  F  D  E  I  E  F  E  K  M  L  R  K  K  Y  A  K  R  D  E  E  Y  D  S  M  I  G  V  V  R  E  T  P  P  E  L  V  L  P  D  N  I  L  P  E  K  A  A  K  S  I  A  Q  *  D  Q  C  P  S  N  S  L  F  F  C  F  P  E  I  Y  F  T  P  *  A  S  V  W  R  T  V  M  D  I  G  C  Y  P  S  K  *  Y  Q  T  Y  W  I  A  S  V  R  H  C  F  V  V  K  T  F  A  P  Y  F  P  E  I  L  Q  L  G  K  G  S  Y  A  H  K  C  L  *  L  *  E  I  I  F  N  R  F  I  W  *  I  V  I  G  I  T  *  N  I  D  S  T  F  Q  T  Y  F  F  I  S  *  S  I  Y  V  *  Q  C  P  S  C  L  R  F  H  A  L  L  R  S  M  T  K  *  A  Q  C  M  W  G  N  Q  *  P  K  A  K  A  C  *  L  *  L  Y  *  L  *  Y  Y  K  G  R  D  D  W  L  I  G  V  *  R  A  K  R  *  V  I  S  P  *  I  Q  P  C  L  I  V  F  L  *  *  H  C  I  *  M  I  G  I  C  *  I  V  W  F  *  M  *  S  S  L  V </second_frame>
            <third_frame>   N  R  P  F  C  Y  T  N  T  L  T  A  Q  L  Y  *  S  E  R  G  L  N  R  K  K  K  K  E  E  V  K  H  G  N  P  R  E  S  N  L  L  P  G  I  H  R  S  S  D  R  Q  S  S  *  S  R  R  K  S  P  T  R  Q  L  P  H  R  G  T  P :   V  Q  A  S  D  S  Y  E  R  I  R  *  S  S  G  G  G  *  G  C  I  C  S  S  R  C  L  S  H  W  R  C  P  C  G  T  Q  F  I  Y  L  V  W  M  C  T  K  R :   *  C  *  Q  H  Q  C  R  I  W  Y  Q  Y  T  G  Q  L  P  C  S  C  G  Q  I  K  Y  K  S  K  G  A  A  H  H  H  R  E  Q  C  Y  C  W :   Y  G  Q  A  I  P  L  S  F  *  G  S  *  L  M  K  R  *  P  S  L  L  S  Q  Q  P  T  T  V  T  L  L  V  S  M  Q  L  R  I  P  S  P  L  T  K  L  N  L  K  R  C  F  V  R  S  M  P  N  V  M  R  N  M  I  L  *  L  V  L  S  V  K  H  L  P  S  L  Y  F  L  I  I  S  S  P  K  K  L  L  R  A  S  P  N  E  I  S  A  Q  A  T  L  S  F  F  A  F  Q  R  F  I  L  H  R  E  H  L  Y  G  E  Q  S  W  I  L  A  V  T  L  P  N  N  I  K  L  I  G  *  H  R  Y  V  T  A  L  *  L  R  L  L  P  L  I  S  Q  K  F  F  S  L  E  K  E  V  T  P  T  S  A  C  N  S  E  K  S  F  S  I  D  L  F  G  K  L  L  L  E  *  H  K  T  L  T  A  H  S  K  H  I  S  S  S  V  E  A  F  M  F  S  N  A  L  L  V  *  D  S  M  H  Y  *  D  P  *  L  S  K  H  S  A  C  G  E  I  N  D  L  K  P  R  H  V  S  Y  S  Y  I  N  Y  N  I  I  K  V  E  M  I  G  *  L  G  Y  E  E  P  K  D  E  *  F  P  R  K  F  S  L  V  L  L  C  F  Y  N  D  T  V  Y  E  *  L  A  S  V  E  L  F  G  F  E  C  S  H  L  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116908" stop="117052"/>
                    <exon start="119248" stop="119391"/>
                    <exon start="120909" stop="121034"/>
                    <exon start="122092" stop="122114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERRRRRRSNMGTLGKAIYSLGSIVRATGKALDRVGNRLQGSSHIEEHLSRHRTLMNVFDKAPVVDKDVFVAPGASVIGDVHVGRNSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNISQKVLPTIIGNNVTVGMGRQSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122291" stop="122506"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLSVKHLPSLYFLIISSPKKLLRASPNEISAQATLSFFAFQRFILHREHLYGEQSWILAVTLPNNIKLIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="122787" PGL_stop="122402"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122787" e_stop="122402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="122787" e_stop="122402" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122787" stop="122402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCACATGCACTGTGCTTACTTAGTCATGGATCTCAATAATGCATGGAATCTCAAACAAGAAGGGCATTGCTAAACATAAATGCTTCAACTGATGAAGAAATATGTTTGGAATGTGCTGTCAATGTTTTATGTTATTCCAATAACAATTTACCAAATAAATCTATTGAAAATGATTTCTCAGAGTTACAAGCACTTGTGGGCGTAACTTCCTTTTCCAAGCTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAA</gDNA_template>
            <first_frame> P  H  A  L  C  L  L  S  H  G  S  Q  *  C  M  E  S  Q  T  R  R  A  L  L  N  I  N  A  S  T  D  E  E  I  C  L  E  C  A  V  N  V  L  C  Y  S  N  N  N  L  P  N  K  S  I  E  N  D  F  S  E  L  Q  A  L  V  G  V  T  S  F  S  K  L  K  N  F  W  E  I  R  G  K  S  L  N  Y  K  A  V  T  Y  R  C  Y  P  I  S  L  I  L  F  G  R  V  T  A  N  I  H  D  C  S  P  Y  R  C  S  R  C  K  I  N  L  W  K  A  K   </first_frame>
            <second_frame>  H  M  H  C  A  Y  L  V  M  D  L  N  N  A  W  N  L  K  Q  E  G  H  C  *  T  *  M  L  Q  L  M  K  K  Y  V  W  N  V  L  S  M  F  Y  V  I  P  I  T  I  Y  Q  I  N  L  L  K  M  I  S  Q  S  Y  K  H  L  W  A  *  L  P  F  P  S  *  R  I  S  G  K  *  G  A  K  V  L  T  T  K  Q  *  R  T  D  A  I  Q  *  V  *  Y  Y  L  E  G  *  Q  P  I  S  M  T  V  L  H  T  D  A  H  G  V  K  *  I  S  G  K  Q  K  </second_frame>
            <third_frame>   T  C  T  V  L  T  *  S  W  I  S  I  M  H  G  I  S  N  K  K  G  I  A  K  H  K  C  F  N  *  *  R  N  M  F  G  M  C  C  Q  C  F  M  L  F  Q  *  Q  F  T  K  *  I  Y  *  K  *  F  L  R  V  T  S  T  C  G  R  N  F  L  F  Q  A  E  E  F  L  G  N  K  G  Q  K  S  *  L  Q  S  S  D  V  P  M  L  S  N  K  F  D  I  I  W  K  G  N  S  Q  Y  P  *  L  F  S  I  Q  M  L  T  V  *  N  K  S  L  E  S  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122748" stop="122404"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CMESQTRRALLNINASTDEEICLECAVNVLCYSNNNLPNKSIENDFSELQALVGVTSFSKLKNFWEIRGKSLNYKAVTYRCYPISLILFGRVTANIHDCSPYRCSRCKINLWKAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="124943" PGL_stop="126717"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124943" e_stop="125088"/>
            <exon e_start="126305" e_stop="126568"/>
            <exon e_start="126651" e_stop="126717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="124943" e_stop="125088" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="125089" i_stop="126304" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126305" e_stop="126568" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.957">
            <gDNA_intron_boundary i_start="126569" i_stop="126650" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126651" e_stop="126717" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124943" stop="125088"/>
              <exon start="126305" stop="126568"/>
              <exon start="126651" stop="126717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124952" stop="125088"/>
              <exon start="126305" stop="126566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124956" stop="125088"/>
              <exon start="126305" stop="126568"/>
              <exon start="126651" stop="126691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341193" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA : GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG : TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAG</gDNA_template>
            <first_frame> L  M  V  K  I  K  V  K  V  *  I  *  V  H  Q  L  Y  L  D  Y  N  H  L  P  *  *  I  I  *  L  R  W  I  G  L  F  S  P  K  F  P  V  N  V  V  A  L  S  Q :   L  Q  L  K  S  *  S  I  Y  S  T  S  L  T  P  I  S  F  L  L  L  T  M  N  P  Y  *  R  L  *  L  E  V  A  L  Q  I  Q  L  E  G  W  L  L  V  L  G  L  V  V  G  S  L  G  L  V  A  K  M  K  K  V  N  Y  L  *  A  T  W  A  F  T  K  W  I  S  Q  D  *  D  *  R  M  E  L  Q  L  S :   V  F  V  W  L  T  K  L  A  I  V  P  C  V  H  V  C  L  A  L  *  K </first_frame>
            <second_frame>  *  W  *  K  S  K  *  K  C  K  Y  R  C  T  S  C  T  W  T  T  T  I  C  P  S  R  S  Y  S  *  G  G  L  V  S  S  L  P  N  S  R  *  T  W  W  L  F  P   : S  C  S  *  R  V  E  V  Y  T  Q  R  A  *  R  P  Y  P  S  F  Y  *  Q  *  I  H  I  E  D  Y  S  W  R  *  R  C  K  Y  N  *  R  V  G  C  W  F  W  D  *  *  W  D  H  W  G  L  W  R  R  *  R  R  *  I  I  Y  E  Q  H  G  L  L  Q  S  G  S  L  K  I  E  I  E  E  W  N  Y  S  S   : V  C  L  S  G  *  R  S  W  Q  S  Y  H  A  S  M  F  V  W  L  C  E   </second_frame>
            <third_frame>   N  G  E  N  Q  S  E  S  V  N  I  G  A  P  V  V  L  G  L  Q  P  F  A  L  V  D  H  I  A  K  V  D  W  S  L  L  S  Q  I  P  G  E  R  G  G  S  F  P  :  V  A  V  E  E  L  K  Y  I  L  N  E  L  N  A  H  I  L  P  S  T  D  N  E  S  I  L  K  T  I  A  G  G  S  V  A  N  T  I  R  G  L  A  A  G  F  G  I  S  S  G  I  I  G  A  C  G  E  D  E  E  G  K  L  F  M  S  N  M  G  F  Y  K  V  D  L  S  R  L  R  L  K  N  G  T  T  A  Q  :  C  V  C  L  V  D  E  V  G  N  R  T  M  R  P  C  L  S  G  S  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124945" stop="125088"/>
                    <exon start="126305" stop="126568"/>
                    <exon start="126651" stop="126716"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGENQSESVNIGAPVVLGLQPFALVDHIAKVDWSLLSQIPGERGGSFPVAVEELKYILNELNAHILPSTDNESILKTIAGGSVANTIRGLAAGFGISSGIIGACGEDEEGKLFMSNMGFYKVDLSRLRLKNGTTAQCVCLVDEVGNRTMRPCLSGSVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 172 chains have been computed
$ 
$ memory statistics:
$ 295824 bytes spliced alignments in total
$ 138 spliced alignments have been stored
$ 2143 bytes was the average size of a spliced alignment
$ 31056 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1552 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 193 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:46:22
-->
