<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:51:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468297" ref_strand="+" ref_description="SGN-E468297 [cSTB-3-A6]">
      <seq>acgagggtgaattccactcaactccaatggtgctggctttcattgtgtttggactgatgctactcttaactgatgtagtctcgtcgcactttatcgttgagactcttccgggattcaatggacaacttccatttaaacttgaaacaggaatctgagagggacccacaaaatgatcctctcattatttggctcactggaggtcctggtggctctggtctatctgcctttctatatgaaattggccctttaacatttgattatgcaaactctagtggaaatttccctaaattggagttgaacttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="24598" stop="1720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24296" g_stop="24166" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="148" r_length="131" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24165" i_stop="2878" i_length="21288">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.746" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2877" g_stop="2785" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="241" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2784" i_stop="2085" i_length="700">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.474" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2084" g_stop="2020" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="306" r_length="65" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E468297" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24296" e_stop="24166"/>
          <exon e_start="2877" e_stop="2785"/>
          <exon e_start="2084" e_stop="2020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCCAATGGTGCGAGCTTTTATTATATTTGTACTGATGCTACTCTTAACTTATATAGTCTCATCACGCTTCATCATTGAGACTCTTTCGAAATTCGATGGACAATTTCCATTTAAACTTGATACATGGTAAGTATATACATATTTTATCTTTTCATATATAATTAAACTAGTAAACTTAGCCGCGCTATGCGCGGTATTACAAAGTTTTTATTTTTCTTTAATTTTTAAATCAATAGATTAGTTAATAAATTTTATTATTTAGCTTTATAATTTCAACTCAATTCATGAATTAATTTTATCAAAAAATAAAAACTTGTACGGTCAAATACCTATACTTTTTTTGGTTGAATAGTACCTATTCTTTTATGTTAGTTATAATATATAATTAAGAATTTATGACTTCATTATTGTAACGACCTGTTTAGTCGTTTTGAACAGCAGATTTTATTTCTAGAAAAACAGGTTGAGGCGACGGACCCCCACGACGGACCGTCATGGGCACGACGGACCTTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTTGTAACGAAATGGAAGGACGGACCGTCACATGTGTGACGGACCGTCACATGTGTGACGGACCATCACAGAGTCTTCAGGGGAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGAAGTTTTGGACTATTCCTACTTTAATTAATAAGTTAGAGGGTTAAGGTTAATAAGTCCAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGGGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTGGAATAAGAAAATTTGAAAGCACAAGAGAGGGAGAAAACGAACGAACAAGGAGAGAAGAAGAACAAAGCTTTGGGAATTTGCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGTTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAGTTGATAGAAGAAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGAGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGAAACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACATAGTTGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCATCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATCTCTATTTTGAGTTGGCCAATGATATCTACTCAGTACCCGTGTTTGGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGTCGTCATCTTCGACTCAACAGTAATTCTAGCCAGTCTTCATTACTCCGGATATAAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAACTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTTATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGACCCGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACACCAGCACCGGCGAAACAGGGTGCGTCTGAGCCAACCACTGGGGCAGTGACTCCTCCACCGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACGAGCACTTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGATTTTAGAGGTACAACATGCAGCCACTATGTCTCCTCGTATGGATGCCTCATTGGACATGGGCACGTTTTCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGATACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAAGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGATTTCACAATGGCATCGACATCAAAGAGGATTTGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTATAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATACTTGACTCTATAGAGTGTTATGGATGTGGGGAGACTGGGCATATTAGGAGGAATTGTCCCAAATAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCATTATTCTGGAAGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAATGGACAAACAAACGAAAGGGCCCATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCTTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATACGCCTATTCGTGTTTCTATTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTCTAGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCTTATAGAATGGCTCCCACGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTCGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGTATAGACTACCGGCAGTTGAACAAAGTAACTATTAAGAACAAGTACCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTATCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTATTTTTAGAACCAGGTATGGACATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTACTGCATTCATGAGTTTGATGAACGAGATTTTTAAGCCATATTAGGATATCTTTGTGATTGTATTCATTGATGATATACTGATATACTCTAAAAGTAAGGAGGAACATGAGGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGTCTAGATGCACTGTCCTTCTTGGGGCATGTGGTTTCTAAGGATGGGGTGATTGTGGATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCTACTAATGTGTCAAAAATAAGGAGTTTTGTTGGTTTAGCTAGCTATTACCGCCGATTTGTCAAGGGATTCTCTTCCATTGCTTTCCAATTGACGAACTTGACTAAGCAGAATGTTCCATTTGTATGGTCGGACGAGTGTGAAGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACTGCACCAATTCTCACCTTGCCAGTGGAAGGTAAGAATTTCATTGTCTATTGTGATGCATCCTATTCGGGTTTGGGTGCAGTGCTAATGCAAGAGAAGAATGTGATTGCTTATGCTTCAAGACAATTAAAAGTACATGAACGTAACTATCCAACTCATGACTTGGAATTGGCCGCGGTAGTGTTTGCATTAAAGCAATGGAGACACTATTTATATGGGGTTCAGTGTGAGGTCTATACGGATCATCGTAGCCTACAGTATGTCTTTACTCAGAAAGATTTGAACTTGAGACAGAGGAGATGGATGGAACTACTGAAGGACTACGACATCACTATTCTGTATCATCCGGGGAAGGCGAATGTTGTAGCGGATGCTTTAAGTAGAAAGGCGGGAAACATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGACGCCCATTGGCTAGAGAAGTTCAGATTCTGGCTAACGACCTTATGAGATTAGAAGTAAATGAGAAGGGAGGATTTTCAGCTTGTGTGGAGGCAAGATCTTCCTTCCTTGACAAGATTAAGGGAAAGCACTTTAATGATGAAAAATTAATCCGGATCCGAGATAAAGTGTTGCAAGGAGAGCCTAAAGAAGCGACAATCGATGAGGAAGGTGTTTTGAGGATTAAGGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCGATACATCCGGGTGCAACCAAGATGTACTGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGATATTGTGGATTTTATTGCCAAATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAAAGGCCCGGAGGAACACTTTAGAGAATGCCCATTCCTGAATGGAAGTGGGAAAGGATTGCAATGGATTTCGTGGTTGGTCTTCCAAAGACATTGGGAAAGTTTGATTCTATTTGGGTAATTGTTGATAGGTTAACTAAGTCTGCTCATTTCATTCCGGTCAAGGTGACTTACAATGCAGAGAAGTTAGCCAAACTTTACATCTCGGAAGTGGTGCGATTGCATGGGGTTCCACTCTCCATTATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTTAAAAAACATTGCATGCGGAATTGGGTACTAGGTTGGACCTTAGTATTGCGTTCCATCCTCAGACCGATGGTCAGTCTGAGCGAACGATTCAAGTGTTGGAAGATATGCTTCGTGCATGTGTGATAGAATTTGGTGGTCAGTGGGATAGCTTTTTACCCTTAGCAGAGTTCTCCTACAACAATAGCTATCACTCAAGCATTGATATGGCCCCATTTGAGGCACTATACGGGAGAAGATGTAGGTCTCCCATTGAGTGGTTTGATGCATTTGAAGTTAGACCTTGGGGTACTGACCTTCTGAGGGAATCGTTAGATAAAGTGAAATCTATTCAAGAAAATCTTCTAGCGGCGCAAAGTAGACAGAAGGAGTATGCAAATAGGAAGGTTCTAGACTTGGAGTTTATGGAGGGTGAACAAGTCTTGTTGAAGGTTTCGCCAATGAAAGGGGTGATGTGGTTTGGTAAGCGAGGTAAACTTAGCCCAAAGTATATTGATCCATTTGAAGTACTTAAGCGAGTAGGGGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTATCCGGAGTGCATCCGGTATTTCATATGTCGATGTTGAAAAGACACCATGGGGATGGAAACTACATTATCTGTTGGGATTCAGTTTTGTTTGACGAGAACTTGTCTTATGAGGAGGAACCTGTTGCCATTCTAGATAGAGAAATTCGCAAGTTGAGATCAAGGGAGATCGCATTCATCAAAGTTCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATATGAGAAAGATACCTATATCTGTTTACAGATTCAGGTACTCCTTTTTGCCCTTGTTTTCCTTCTTGTGATCGTTCGGGAACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAACAGCAGATTTTATTTCTGGAAAAACAAGCTGAGGCGACGGACCCCCACGACGGACCGTCATGGGCACGACAGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAAAGAAATGGAAGAACGGACCGTCACAGAGTCTTCAGGGGAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCAGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAGTTAGAGGGTTAAGGTTAATAAGTCCAATTACTTGGAGGTTAAAAGAGGTAACCTTAAGTTAATTAGGGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTGGAATAAGAAAATTTGAAAGCACAAGAGAGGGAGAAAACGAACGAACAAGGAGAGAAGAAGAACAAAGCTTTGGGAATTCGCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATAGGAGTGTCACGTTCCGACACATAGTAGTAGGGGATCAGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGTGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTTAAAGATGGTAATATACTCAATGTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATTGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATCTCTATTTTGAGTTGGCCAATGATATCTACTCAGTACCCGTGTTTGGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAATTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAATAATAGTTATTGAATTGGTTTTTATTAATGAGTTCAAGTCTTCCGCATTACTTTATGTTGAAATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGTCAGTCGCGACCCGATTTGGGTCGTGACAATTATCCATTTGAATGTGTCCTCAAAATTAAATATGGTTAACTTTGATGTTTTGTTAAAAATTTAAAGTGAGATTTTTAGTCTTTTAAATTTTTTTAAAAATATCAAAAGATTTAAAATAGTAACAAATTCAAAAACAGACTTAGAAATATGAAAAATTATTCGTAATAGATAAGCTACCTATAATTTGAAAACTTAAAAAAGTACTTCAATATTTATATATTAAAATATAAAGTTCTCTATATATATAGATTCTTTGGAAGGACATGGGTGATACATGATTTTAGTTCGATAAAATAATTTTTAGTGATATAGAATTAACATAAAAATAATATATTATTGTTAAAATGCATAATAAAATAAGTAATAAATGAACAATTATAGATGAATGATAAAAGGTTTTATGTTAAGATTAAAAAAAAACTTATATATCTACTAAAAACTTATAAGTGGACTCTTGAATTTTTTCTAAATAAAGTAAACATAAAAAAACTTTTCACAAATAATATGAATATTTATGATTATTAACGATACATGATATTTTCTTATAATTAAAGTGTTGGAGAAAAAGTTAAGTAAATTTTTAGAATCATTATAATGGAGGATGAATGGTTAGTAATAAGTATATTTAAAATGATTATCTGTATTAATTTTTTCCTTGAGAAATTTTGTAACGACTGTTTAGTCGTTTCGAGCAGTAAAGTTTAGTTCTGAAAATAACTGATTGTGTCGACGGACCACACGATGGACCGTCGTGGTCACGACGGATCGTCGAGGGTCTCCGTCCCAAAACACTTAAACTCTAAAATTTGGGTACGGGGAAACAACTCTCTGAACTTCGTGACGGAAGAGCAGCACGGACCGTCGTAGGCACGACGGACCTTCACAGACTCTTTAATGAATTCGACTCTCTGAACTTTGTGATGGAAATAGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACGAGCTGCGTAACCTTGACTAGGTCGGATTTCTGCTAAAGTTTTAAAGGGGTGTTTTGGACTATTTATGTCAAACTGTATGAAATTAGTGGGTAAGTTTAATAACTTATTTACTTGAGGATTAAAGGAGATAACCTTAAAATAAATAGTGGGTTACTTTTATCATCTTTTATACTTAATTATATGGTAATTAGGGTAAAACAAAGGGAATTTGAAAGAAGAGATAACGAGCGAGAGAGAAAGAAGAACGAAGAGAAAGCAAAAAGCATTGGAGAAGTAGATTGCTTGATCACGAATCTTCGATGGAGGTAGGTTATGGTTTATGCTATTTCATAGTAAACTCTAAATAGCGATTGATATGTGTTGGGTGGTATTGTAAAGTCTTCTATATGCTTCATTGTGTTGTTGCATGTTGTGATTATGTATATGGTGGTGGATTATAATGATGATACTGTGGAATCTTAAAAACCTTAAATATACTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACTAAAATAATGAGATTAAGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGTACCGACACCATGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGATGTCACGAACCGACACGTAGAATTAGGGGATCGGAGTGTCACGTACCGACACCAAGAATTAGGGAATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCAGAGTGTCACGTACCTACACCAGGAATTAGGGGATCGGGTGTCACGAATCGACACGTAGTAGTAGGGGATCAGAGTGTCACGTTCTGACACCAGGATAATAAAGAGAATGAATCTTGAATTATGTTAATATACTCAAATTTAAAGAACCTATTCCCCAAATGAGTATGGTGTGGAGGCTTGAGTCCTCATAGATGTGCCTGGGGTTGTGGCCAATGGTTATGGTACGTGTTGTTGTCACCAGTTGAGTATGGTAGTCGATTTTATGTTATTATGTGATATATATTGCTTTCTATTTTGAGTTGGCTGATGATACCTACTCAGTACTTGTGCCTTGTACTGACCCCTACGTGTAATTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAACGTGTCATCGACTTCAACTCGTCCTCAACTCTAGCCAGTCTTCATCACGTCAGATTTCAGGGTGAGCTATTGTTCCTAGCTCGGACTGGATTCTCTCTCATTCATGTCTTGATGTCCTTGAAGTTCGGACATGGACCATCTGTTTACTTATTTTAGCTTCCTAGATACTCTTAGATTTAGTAATTTGAGGATAGAATGCTCTTGTGGTGATGACTTTCAGATTTTGGGAATAATAAGTATTGAGTTTTAGAAGTTATTTAATCGATGTTTATTAATGAGTTTTAAGTCTTCCGCATTATATTCTGTATCTTATGGTTGAAATGTTGGGGTTTAGATTGGTTGGTTCGCTCACATAGTAGGATAAGTATGGGTGCCACTCGCGGCTCGTTTTGGGTCGTGACAAACTTGGTATCATAGCCTTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTGAGGAACGGTAGGGGGACACCTTTACTTTTCTTTGAGAGTCTACAGGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATATAGGTGATACAAATTGATATCTGACCATCTTCACTCTATTTCGTAGATGGTTAGAACTAGAACAACAACTGCGCCAACACCAACATCGGCAAGACAGGATGCGTCTAAGCCAACCACTGGGGTTGTAGCTCAAAGAGGAGTAGTGGCAAGAGGCCGTGGTAGAGGTCGCGGGAGGACGTCCTCTAGAGGAAGAGTACAAGCACCTGGCCCTTCTAGTACTAGGGCGGTGACTACTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAGCAAGTGCAGAATGAGGAATTACCACCCCAACCTACCCAGAGATGATTAACCAGGTTCTTGCTTATCTTAGCGGGTAATCCGATCAAGGCCAAACGCCTCCAGTGTTTTCTGCACTAGCACCGTAGGTTCCGGGAGTACAACATGCAGCTGCTATGGCTCCCCGCATGGATGCCTCATTAGAAATAAGAACGTTTCCTCGATTGACTACAGGGCCTATAATGACGAGTAATCAACACGAACTTTTCATGAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATAATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGGCATAGTGGAACAGGTGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACATGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATACCCCGGACCTTGAGGGATAGGAGGAGGGATGAATTCCTGAGCCTAGAGCAAGGCAGGATGTCTGTTACTGATTATGAGGATAAGTTTCGTGCATTATCCAGGCATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTAGCAACTGCAGCAAAATCCTTTCAGGAGGTGGTAGATTTTGTGATAGAAGTGGAGGGAGTAAAGCTAGACGACTTCACCACAGCATCGACACCTAAGAAGTTTTGTAAGGGAGGTGAGTTTGGTGGGTCTTACTCCAGAGGGCAGAGTTCAGGAGGTTACCCAGCCCGACCTATTCAGTCTTCACTGCAGGCTGTAGCTGGGGGTCCACCGCAGACCGGTCAACACTTCTCTGAGTTTGGGGGTTATCCCCAGACTCCGTCGTTCTCACAGAGACCTATGCTTGAACCCAGAGAGTTTTATGGATGTGGGGAGACTGGACATATTAGGAGGTATTGTCCAAAACAGAGTTACAGACTCCCAATAGTCAGGGGTAGAGGTGGTCATGGAAGAGGCCGCTATTCTGGAGGATGGGGTGGCCAAGGTAATGGAGGTAACCAAATCAACTGGGGTGGCGGGCAAACTAGAACTACTGCAGCGCAACATAGTAGGGGCAACGGGCAGACAGGTGATAGGGCCCATTGTTATGCTTTCCCTGGGAGGTCTGAAGCGGAGACATCTGATGCTGTTATCACAGGTAATCTTTTGGTTTGTGATTGCATGACTTCTGTATTATTTGATCCTGGCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTTTTGATTTACATTGTGATTTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGGCTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCCTAGAAATGGTTGACTTCGATGTATTTCTGGGTATGACTTGGCTTTCTCTAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAACGTTGTCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGTGATTACACTTCCACTCCAATTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCTCCCCATTTCATATCCCCTTATAGAATGACTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTTAAGAGTTGTTAGGCAAAGGCTTCATTAGACCAAGTGCTTCCCCTTGGGGTGCTCTTGTTTTGTTTGTGAAGAAGAAGGATGGAAGTTTTCGGATGTGCATAGACTACAGACAACTGAATAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATGATTTGTTCGATCAGTTACAAGGTGCTTGTACTTTCTCAAAAATCAATTTGAGATCTGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAAACTGCTTTCCGGACCAGGTATGGACATTATTTCTTAGTAATGTCTTTTGGGCTTATGAATGCCCCTGCTGCTTTCATGAGCTTGATGAACGGGATTTTTAATCCATATCTGGATCTCTTTGTCATTGTATTCATTGATGATATACTGGTATACTCCAAGAGCAGGAAAGAACATGAGGAGCACTTGAGAATTTTATTGGAAACGTTGAGGGAGAAAAAGCTTTATGCCAAATTCTCCAAGTGTGAGTTTTGGCTAGATTCAGTGTCCTTCTTGGGGCACGTAGTTTCTAAGAATGGAGTAATGGTGGATCCTTCTAAGATCGAAGCAGTGAAGAGTTGGGTGAGACCTACTAATGTTACAGAGGTAAGGAGCTTTGTTGGTTTAGCTAGCTACTACCGTCGATTTGTCAAGGGATTTTCTTCTATTGCTTCCCAATTGACAAACTTGACTAAGCAGAGTGTTCCATTTGTATGGTCGGACGAGTGTGAAGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACTGCACCAATTCTTACCCTGCCAGTGGAGGGTAAGAATTTCATTGTTTACTGTGATGCATCCTATTCTGGTTTGGGTGCAGTGCTAATGCAAGAGAAGAATGTAATTGCTTATGCTTCGAGGCAATTAAAGGTGCATGAACGTAATTATCCGACCCACGATTTGGAGTTGGCTGCAGTAGTGTTTGCATTAAAGCAATGGAGACATTATCTATATGGGGTTAAGTGTGAAGTCTATACGGATCATCGTAGTTTACAGTATGTCTTTACTCAGAAAGATTTGAATTTGAGACAGAGGAGGTGGATGGAACTACTAAAGGACTATGATATCACTATCTTGTATCATCCGGGAAAGGCTATGTTGTGGCGGATGCTTTAAATAGAAAGGCATGAAGCATGGGAAGTCTAGCTCACTTGCAGGTTTCTAAACGCTCATTGGCTAGAGAGGTTCAGACTCTAGCTAATGACTATATGAGGCTGGAAGTACTAGAGAAGGGAGGATTTTTGGCCTGTGTGGAGGCAAGATCTTCCTTTCTTGACAAGATTAAGGGAAAGCAGTTTACTGATGAGAAACTGATCCGGATTCGAGATAAGGTATCGCGTGGAGAGGCTAAAGAAGCAAAAATTGATGAGAAAGGTGTTTTGAGAATTAAGGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATTCACACTATTCTTACAGAGGCTCATAGTTCAAGGTATTCTATACATCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACATTTTTGGTGGAGTAGGATGAAGCGTGACATTGTTGATTTTGTTGCTAAATGCCCGGATTGTCAGCAGGTAAAGTATGAACACCAGAGGCCTGGAGGGACACTTCAGAGAATGCCATTCCTGAATGGAAGTGGGAGAGAATTGCAGTGGACTTCGTGGTTGGTCTAAGTATGACTCTATTTGGGTGATTGTTGACAGATTAACTAAGTCTGCTCACTTCATTCCGGTTAAGGTGACTTACAATGCAGAGAAGTTAGCCAAACTTTATATCTTAGAAATTGTTCGATTGCACGGAGTTCCACTTTCCATCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAAACATTGCATGCTGAATTAGGTACTAGGTTGGATCTTAGTATTGCATTTCACCCTCAGACCGATGGTCAGTCTGAGCGAACGATTTAGGTTTTGGAGGATATGCTTCGTGCATGTGTGATAGAGTTTGGTGGTCATTGAGATAACTTCTTACCCTTAGCAGAGTTCTCATACAACAATAGCTATCACTCAAGTATTGATATGGCCCCATTTGAGGCACTGTATGGGAGAAGATGTAGGTCTCCCATTGGGTGGTTTGATGCATTTGAGGTTAGACCTTGGGGTACTGATCTTTTGAGGGAATCGTTAGATAAAGTGAAATGCATTCAAGAAAAGCTTTTAGCGGCTCAAAGTAGACAGAGGGAATATGCAGATTGAAAGGTTAGAGACTTGGATTTTAGGGAGGGTGAACAAGTCTTGTTAAAGGTTTCACCCATGAAAAGGGTGATGCGGTTAGGTAAGCGAGGTAAGCTTAGTCCGAGGTGCATTGGTCAATTTGAAGTTCTGAAGCACGTGGGGGAGGTAGCTTACGAATTAGCCTTGCCCCCAGGACTCTCAGGAGTGCACCCGGTATTTCATGTGTCTATGCTGAAAAGATACCATGGGGATGGAAACTACATCATTCGTTGGGATTCAGTTCTTTTTTATGAGAATTTGTCTTATGAGGAGGAGCCTGTTGCCATTTTAGATAGAGAAGTCCGCAAGTTGAGATCGAGGGAGATTGCATCGATCAAGGTTCAATGGAAGAATCAGCCAGTTGAAGAGTCCACTTGGGAGAAGGAGGCTGATATGCAAGAAAGATATCCACACCTTTTCACAGATTCAGGTACTCTTTCTCGCCCTTGTTTTTCTTCTTGTGATCGTTCGAGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTCGAGTAGTAAAGTTTAGTTTTGAAAATAATTGACTGTGTCGATGGACCACACGACGGACCGTCGTGGTCACAACGGATCGTCGAGGGTCTCCGTCCCAAAACACTTAAACTCTGAAATTTGGGTACGGGGAAAAAACTCTCTGAACTTCGCGACGGAAGAGTAGCACGGACCGTCGTAGGCACGACGGACCGTCACAGACTCTTTAATGAATTCGACTCTCTGAACTTTGTGACGGAAACAGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACGAGCTGCGTAACCTTGACTGGGTCGGATTTCTGCTAAAGTTTTAAAGGGGTGTTTTGGACTATTTATGTCAAACTGTATGAAATTAGTGGGTAAGTTTAATAACTTATTTACTTGAGGGTTAAAGGAGATAACCTTAAAATAAATAGTGGGTTACTTTTATCATCTTTTATACTTAATTATATGGTAATTAGGGTAAAACAAAGGGAATTTGAAAGAAGAGAGAACGAGCAAGAGAGAAAGAAGAACGAAGAAAAAGCAAAAAGCATTGGAGAAGTAGATTGCTTGATTACGAATCTTCGGTGGAGGTAGGTTATAGTTTATGCTATTTCATAGTAAACTCTAAATAGCGATTGATATGTGTTCGGTGGTATTGTAAAGTCTTCTATATGCTTCATTGTGTTGTTGCATGTTGTGATTATGTATATGGTGGTGGATTATAATGATGATACTGTGGAATCTTAAAAACCTTAAATCCACTTTGTTAATGATGATGCATTGGTATAAAAGAAGGCTTGATGAACTAAAAGAATGAAATTAGGGGATCGAGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGTACCGACACCAGGAATTAGGGGATCGGGTGTCACGAATCGACACGTAGAATTAGGGGATCGGAGTGTCACGTACCGACACCAGGAATTAGGGGATCGAGTGTCACGAATCGACACGTAGAATTAGGGGATCGGAGTGTCACGTACCGACATCAGGAATTAGGGGATCGGGTTTAACGAACCGACACGTAGTAGTAAGGGATCGGAGTGTCACGTTCCGACACCAGGATAATAACGAGAATGAATCTTGAATTATGTTAATATACTCAAATTTAAAGAACCTATTCCCCAAATGAGTATGGTGTGGAGGCTTGAGTCCTCATAGATGTGCCTGGGGTTGTGGTCAATGGTTATGGTACTTGTTGTTGTTACCAGTTGAGTATGGTAGTCGATTTTATGTTATTATCTGATATATATTTTTTTCTATTTTGAGTTGGCTGATGATACCTACTCAGTACTTGTGCATTGTACTGACCCCTACGTGTAATTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAACGTGCCATCGACTTCAACTCGTCCTCAACTCTAGCCAGTCTTCATCACGTCAGATTTCAGGGTGAGCTATTGTTCCTAGCTCGGACTGGATTCTCTCTCATTCATGTCTTGATGTCCTTGAAGTTCGGACATGGACCATCTGTTTACTTATTTTAACTTCCTAGATACTCTTAGATTTAGTAATTTGAGGATAGAATGCTCTTGTGGTGATGACTTTCAGATTTTGGGAATAATAAGTATTGAGTTTTAGAAGTTATTTAATCGATGTTTATTAATGAGTTTTAAGTCTTCCGCATTATATTCTGTTTCTTATGGTTGAAATGTTGGGGTTTAGATTTGTTGGTTCGCTCACATAGTAGGATAAGTGTGGGAGCCACTCGCGGCTCGTTTTGGGTCGTGACAAACTTTCTTCTATAATTAAGTTTTTTTTTAAAAAAAATTATTTCAACTCTATTTTTTAGTCTCCCTTTTTTTTTAGTCTTTGCTTATTTAATTCTGTTAAGAAAACACAAACAATTAGCATCGTAATTGAAAGACTGAAGTTTGCTCGTCTTTAGTATTTTTGCTAATTTATATATATTTTTTAAAATAGTAACAATTAGCATCAAATCTTAACATAATCAAGTTAGCTTGTCTTAAGCTTTTTATTAATTTAAGCAAAATGTTTAAATGACTTCTCTTAATTAATTTTTATTATACTTTTCAGTATTCATATTTTATTTAAAATTTAAAAATAACTTCATAATAATTTTGATTATTTTCCACCGCTAAGCGTATCTACAAATATATTTTAATGTTTTCAAGAATTGTTTTCGTCTTACTTTTAGTAATGATCTTACTCTTATAATTTCATGCAAAAAAAACAAATCAATTATTCTCTTTTATATATCTTATTTTGTATCATTATTATTAGAAGTAAAAACAATTATATAAAGAAGTCTTTGTCGATAGATTTTGCATTACAAGATTAAAGTAAAGGACAATTAAGCGAAACATAAATATATTTGGTTAGAAATATTTTTTTGATGTGCTTTTAAGATATCACAAATTTAAATATTAAGTAATTTGGGGTTACGAAGATATAAAGTTGGAAGTTATAGGTATTACTAATAAGTGTTAATTAAGTAAGTATAGAGGTTTTGAAAGATGAAGAGGTGTGAGTTTATAATAAAAATTTAATTAAAAATAAATATATAAAAATAAGAGAAAAAAGGTTAAAAAAAATGTGACATATTTTTTTAATAAACAAAATATGTTTAAGTAAAATCCTCCATCATTTTTATGATTTATTTTATTATATGACATATTTTCTTTTTACCTCATTTTAGAAATTTCAAATTATTAAAAGTCTCCAAATATGCTTCTAATAATATACATTATTTTTAGTAATTACTATTATTTTGAACAATATATACTTTTTTCTCTTATTTTATAATATAGGAGAGATATCTATTAAGAGAAAAATTAATTAAAAACAAATTAAAAAGGGACATAGAATTAAAAAGTTAATCAAAAGGAATTAGAAATTTTTTTGAAATTATCAAAAAAAAAGTAATCGTACGAATGTTTTAAAATAAAATTAAAAAATATTTAATTTTTTGTTGATTAAATTCTCAAAATTGTGAAATATTTGGCCTATAAATAATTTCTATATATAAATAATATAAAAAATAATGCAACGTTAAAATTATTATTTTTACCATATCATTGTTATGTATTGTGAGATACGAAATTATAAGAGGAATCGATGTATTTGATTCTTAGTTATATAATATTTAGTATTTTATTTACTTTATATTGAGATGTGATATATTACTTTTTTTATTACTTATATTTATTATATATTTGTATAACATTTTTATAGCTAGTGAGGAGGAAGATATCGTTAGACGAAATTAGAAATAAGATATATTGACGTTTTTTAAATTAACTAATTAATTTGATAAGGAACCAATCAACTCTTATTGCATCAAAGGTTTAACCGGAGAACTATAAACATCCTTACAATAATACCAACAAACATACCTAAAATAATTAACTAATCAAGCAAAAATATTTAAAATATTTAGTTATATGATTTGAAGGGGAAAGAAGGATCACGTTCTCAACATAACATAATTATAATCCTTACAATAATAACAACAAAAAGACATAAAGTTATAGTTAACTAATCAAGCAAAAATATTTAAATATTTAAGTTATATATGATTTGAAGAGGAAAGAAGGATTATGTTCTCAACATAACATAATTCGATTCTTCAAATTTACAAAGTGAATAAAGACAATCAGTGTCGGTAGAAACTACAAGAATAAGAAAAAAAATATCAAAAAACTACAAACAGAAGCAAAAAAAAAAAATATTTTTTTTTATAAAAGAATCATGATTTGTAACATCAGCAATCCAACCTAATAATATCAAATCTATATATAATTACAATAGAACAAAAGTGATAATGATAATTAGACATGTCAAATCATTTTACCTCACAAAATCAAAATATGCAAAATATATAACATTTTTCATTATACATCCCTCTCCTGCAAAAATTAGATCAAAGAAGACAAAAAAAATAACAAATCAAAGGAATAAAAAATGAAGAATAAGGAAAATAAAAATAAAATGATCATCATGCAATGTCTCAAAGTGGATTTTTATAGGTGTAATATTCAGGAGTTATAATTTTTATATTAAATATTTTGAAGTTTATGAATATGAAAGGTTAGGAGTTATATTATTAAATTAAAAATTAGATGTTATATATATTATTAAAAGGTCAGGAGGTGTAATGCTCATTAAGTTACTTATTAATAGCAATATATATATACACATAATATTATTGTGTAAAAAGAAATAATCTAAAAAGCCCAATTTTCTTGAAAAAATATATATATATTTTTCTCAACATTCATGCCACATAGGCGGATTGAAAATCCTCATTTATATATATATATATTGATAGTTACTAATTTGTTTTTTTTTCATGATTAGTTATATTTATTGGTGTTAGAGAAGAGGAAAAATTGCAGCTATTTTATATTTTCGTAGAATCTGAGAGGGACCCACAAAATGATCCTCTCATAATTTGGCTCACTGGAGGTCCTGGTTGCTCTGGTCTATCTACCTTTCTAAATGAATTTGGTATCTCAATTTTAGTGGTGTTAAAACTTTAAATAATTCAATTATTTTTATATATGTGTACAAATCATGTTTTCACGTATAGAAATAATTTATCATTTAGCAAACATCTCTTATCCATAAATCAATAGTGTATTCAACTTTTAGTATGCAATACCAATGGCATAGCCACATGGTACTCAGGCTATCCAATTAGACATCTTTCGTTGGAAAAATATCATATATATTAAGTAAAATAATTCAAAAAATGATTAAATAACATATTTTAGACATCCTTAATACAATAAGCTATTGTACTCTAGTGGTTTGACCTCTTTAGAATGAGGTAGTGCATTTGTGTTTGAATCTTACTAGTTCTACTTTTTGAAAAGAGTTTTTATTACTATTTTTGAAGAATCTTTATGAAATTTCTGACTCCACCACTGTGCAATATCACGGAGATACGATTAATAATCACTTAGGATGTGTTATGTAAGATGAAAATGATTCCTAAGAACAAGAATAGTTTTTTTAAAAAAAATAATTTTCTTGTGTCCGATACATAAGAAAAAAGTTATAATCCCAGAAAGATTTATATATGATCCCAAGTAAAATCTACATGTAATTTACAGTTTTTTAGTAACGTGTGTATATAAGGGAGATCGAGTTGAAGCTCATTCTCCATTAATCTTTTAACCAAGCTTTGGAATAATGCTTGTTTCAGGCCCTTTTACCTTTGATTATGCAAATTCTAGTGGAAATTTCCCTAAATTGGAGTTGAACTTACAT</genome_strand>
        <mrna_strand>TCAACTCCAATGGTGCTGGCTTTCATTGTGTTTGGACTGATGCTACTCTTAACTGATGTAGTCTCGTCGCACTTTATCGTTGAGACTCTTCCGGGATTCAATGGACAACTTCCATTTAAACTTGAAACAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGAGAGGGACCCACAAAATGATCCTCTCATTATTTGGCTCACTGGAGGTCCTGGTGGCTCTGGTCTATCTGCCTTTCTATATGAAATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTTAACATTTGATTATGCAAACTCTAGTGGAAATTTCCCTAAATTGGAGTTGAACTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="8340" stop="9525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8640" g_stop="9225" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8640" e_stop="9225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTTCTCATCAATTTTTGCTTCTTTAGCCTCTCCACGCGATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAACTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAGCCTCATATAGTCATTAGCTAGAGTCTGAACCTCTCTAGCCAATGAGCGTTTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTTCATGCCTTTCTATTTAAAGCATCCGCCACAACA-TAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTTAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="8340" stop="9525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8640" g_stop="9225" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8640" e_stop="9225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTTCTCATCAATTTTTGCTTCTTTAGCCTCTCCACGCGATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAACTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAGCCTCATATAGTCATTAGCTAGAGTCTGAACCTCTCTAGCCAATGAGCGTTTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTTCATGCCTTTCTATTTAAAGCATCCGCCACAACA-TAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTTAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="8340" stop="9492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8640" g_stop="9192" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8640" e_stop="9192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTTCTCATCAATTTTTGCTTCTTTAGCCTCTCCACGCGATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAACTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAGCCTCATATAGTCATTAGCTAGAGTCTGAACCTCTCTAGCCAATGAGCGTTTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTTCATGCCTTTCTATTTAAAGCATCCGCCACAACA-TAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTTAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTGCAGCCAACTCCAAATCGTGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="11041" stop="9782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10741" g_stop="10082" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10741" e_stop="10082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTTTTGATTTACATTGTGATTTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGGCTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCCTAGAAATGGTTGACTTCGATGTATTTCTGGGTATGACTTGGCTTTCTCTAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAACGTTGTCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGTGATTACACTTCCACTCCAATTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCTCCCCATTT-CATATCCCCTTATAGAATGACTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTTAAGAGTTGTTAGGCAAAGGCTTCATTAGACCAAGTGCTTCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="10141" stop="11071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10441" g_stop="10771" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10441" e_stop="10771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGACAACGTTACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTAGAGAAAGCCAAGTCATACCCAGAAATACATCGAAGTCAACCATTTCTAGGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGCCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAAATCACAATGTAAATCAAAACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGAGCCAGGATCAAATAATACAGAAGTCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="12302" stop="11052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12002" g_stop="11351" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12002" e_stop="11351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAACCAGGTTCTTGCTTATCTTAGCGGGTAATCCGATCAAGGCCAAACGCCTCCAGTGTTTTCTGCACTAGCACCGTAGGTTCCGGGAGTACAACATGCAGCTGCTATGGCTCCCCGCATGGATGCCTCATTAGAAATAAGAACGTTTCCTCGATTGACTACAGGGCCTATAATGACGAGTAATCAACACGAACTTTTCATGAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATAATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGGCATAGTGGAAC----AGGTGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACATGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATACCCCGGACCTTGAGGGATAGGAGGAGGGATGAATTCCTGAGCCTAGAGCAAGGCAGGATGTCTGTTACTGATTATGAGGATAAGTTTCGTGCATTATCCAGGCATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTAGCA</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="16185" stop="15000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15779" g_stop="15300" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15779" e_stop="15300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTTCCGACACATAGTAGTAGGGGATCAGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGTGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTTAAAGATGGTAATATACTCAATGTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATTGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATCTCTATTTTGAGTTGGCCAATGATATCTACTCAGTACCCGTGTTTGGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAATTCTAGCCAGTCTTCATTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="16186" stop="15245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15780" g_stop="15543" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15780" e_stop="15543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTTCCGACACATAGTAGTAGGGGATCAGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGTGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTTAAAGATGGTAATATACTCAATGTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATTGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="-" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>ttatgttcattagattgagtatataacatctttcaagattcattgtctttatttctcttgtgtcggtacgtgacattccgctccntcatattcattaatcttcttgtgtcggtacgtgatactctgatcccctaaatctacgtgtcggaacgtgacactccgatcccctaaatctacgtgtcggttcgtgacacctgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaaatctacgtgtcggttcgtgacacccgatcccctaatctatgtgttggttcgtgacacctgatcccttaatctacgtgtcggtttgtgacacccgatcccctaattctacgtgtcagttcgtgacacccgatcccctaatctcattctatcaattcatcaagccttctcccttaccaaggcatcatcaatctcattactttagttcatcaagccttctcccttaccaaggcatcatcattaaaaagagattaggtttttacaagatttgggattcaataacttcatcatgcttatataataacaattatatagttacattcatgcaagcatacaattaagcacatagcagggtttacaatattatcaatacatatcattctctattaagagtttactacgaatatcgtaagagaaacaataacctacctccaccgaagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="15325" stop="23559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15625" g_stop="15935" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15936" i_stop="22851" i_length="6916">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22852" g_stop="23259" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="717" r_length="407" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E349726" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15625" e_stop="15935"/>
          <exon e_start="22852" e_stop="23259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTTCATTACATTGAGTATATTACCATCTTTAAAGATTCATTATCTTTATTTCTCTTGTGTCGGCACGTGACACTCCACTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTACTACTATGTGTCGGAACGTGACACTCCTATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTTGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCCTTCTATCAATTCATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCTCATTATTTTAGTTCATCACGCCTTCTTTTATACCAAGGCCTCATTATTAACAAAGAGATTAGGGTTTTGCAAGATTTGGGATTCAATAACTTCATCATGCTTATATAATCACAATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTACCTCCACCGAAGACTAGTGATCAAGCAAGCGAATTCCCAAAGCTTTGTTCTTCTTCTCTCCTTGTTCGTTCGTTTTCTCCCTCTCTTGTGCTTTCAAATTTTCTTATTCCAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATAACCCCCTAATTAACTTAAGGTTACCTCTTTTAACCTCCAAGTAATTGGACTTATTAACCTTAACCCTCTAACTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCTGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTGGATTTCCCCTGAAGACTCTGTGACGGTCCGTTCTTCCATTTCTTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCTGTCGTGCCCATGACGGTCCGTCGTGGGGGTCCGTCGCCTCAGCTTGTTTTTCCAGAAATAAAATCTGCTGTTCAAAACGACTAAACAGGTCGTTACAATAGATACCAATTTACCCATCGTTCGTTCCCGAACGATCACAAGAAGGAAAACAAGGGCAAAAAGGAGTACCTGAATCTGTAAACAGATATAGGTATCTTTCTCATATATCTGCCTCCTTCTCCCAAGTGGCTTCTTCAACGGGTCGATTCTTCCATTGAACTTTGATGAATGCGATCTCCCTTGATCTCAACTTGCGAATTTCTCTATCTAGAATGGCAACAGGTTCCTCCTCATAAGACAAGTTCTCGTCAAACAAAACTGAATCCCAACAGATAATGTAGTTTCCATCCCCATGGTGTCTTTTCAACATCGACATATGAAATACCGGATGCACTCCGGATAGCCCTGGAGGCAAGGCTAACTCATAAGCCACCTCCCCTACTCGCTTAAGTACTTCAAATGGATCAATATACTTTGGGCTAAGTTTACCTCGCTTACCAAACCACATCACCCCTTTCATTGGCGAAACCTTCAACAAGACTTGTTCACCCTCCATAAACTCCAAGTCTAGAACCTTCCTATTTGCATACTCCTTCTGTCTACTTTGCGCCGCTAGAAGATTTTCTTGAATAGATTTCACTTTATCTAACGATTCCCTCAGAAGGTCAGTACCCCAAGGTCTAACTTCAAATGCATCAAACCACTCAATGGGAGACCTACATCTTCTCCCGTATAGTGCCTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGGGTAAAAAGCTATCCCACTGACCACCAAATTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCGCTCAGACTGACCATCGGTCTGAGGATGGAACGCAATACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTTTAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATAATGGAGAGTGGAACCCCATGCAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATTACCCAAATAGAATCAAACTTTCCCAATGTCTTTGGAAGACCAACCACGAAATCCATTGCAATCCTTTCCCACTTCCATTCAGGAATGGGCATTCTCTAAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAATCCACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACAGTACATCTTGGTTGCACCCGGATGTATCGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATCCTCAAAACACCTTCCTCATCGATTGTCGCTTCTTTAGGCTCTCCTTGCAACACTTTATCTCGGATCCGGATTAATTTTTCATCATTAAAGTGCTTTCCCTTAATCTTGTCAAGGAAGGAAGATCTTGCCTCCACACAAGCTGAAAATCCTCCCTTCTCATTTACTTCTAATCTCATAAGGTCGTTAGCCAGAATCTGAACTTCTCTAGCCAATGGGCGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGTTTCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTCGCCTTCCCCGGATGATACAGAATAGTGATGTCGTAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAGTTCAAATCTTTCTGAGTAAAGACATACTGTAGGCTACGATGATCCGTATAGACCTCACACTGAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCGGCCAATTCCAAGTCATGAGTTGGATAGTTACGTTCATGTACTTTTAATTGTCTTGAAGCATAAGCAATCACATTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGGATGCATCACAATAGACAATGAAATTCTTACCTTCCACTGGCAAGGTGAGAATTGGTGCAGTAGTCAACAAAGTCTTGAGCTTCTGAAAGCTTTCTTCACACTCGTCCGACCATACAAATGGAACATTCTGCTTAGTCAAGTTCGTCAATTGGAAAGCAATGGAAGAGAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACAATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACAGTGCATCTAGACAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATGAATACAATCACAAAGATATCCTAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGTCCATACCTGGTTCTAAAAATAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGATAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGGTACTTGTTCTTAATAGTTACTTTGTTCAACTGCCGGTAGTCTATACACATCCGAAAACTCCCATCCTTCTTCTTTACGAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAAGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACTAGACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAATAGAAACACGAATAGGCGTATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCTTCCAGAATAATGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGCCCAGTCTCCCCACATCCATAACACTCTATAGAGTCAAGTATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTATAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCAAATCCTCTTTGATGTCGATGCCATTGTGAAATCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACTTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTATCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGAAAACGTGCCCATGTCCAATGAGGCATCCATACGAGGAGACATAGTGGCTGCATGTTGTACCTCTAAAATCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAAGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCGGTGGAGGAGTCACTGCCCCAGTGGTTGGCTCAGACGCACCCTGTTTCGCCGGTGCTGGTGTTGGCGCGGTTGTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAAGATGGTCAGATACCAATTTGTATCACCTAGATACCAATTGGACCCAAGTAATAGCACGAAAGAAAGAAAGAAGAATGGAATTTTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCATCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCGGGTCGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATATCAACATAAAGTAATGCGGAAGACTTAAACTCATAAATAAAATCAATAACTATTATTATCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACTTCAAGTTACTAAATCTAAGAGTTTCTAAGAAGCTAAAAATACATAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTTATATCCGGAGTAATGAAGACTGGCTAGAATTACTGTTGAGTCGAAGATGACGACACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACCAAACACGGGTACTGAGTAGATATCATTGGCCAACTCAAAATAGAGATCAATATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGATGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTACCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGCACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTACAACTATGTGTCGGAACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTTTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCATGACACTCGATCCCCTAAATCTACGTGTCAGTTCGTGACACCCGATCCCCTAAATCTACGTGTCAGTTCGTGACACCCGATCCCCTAATCTTCTTCTATCAACTCATCAAGCCTTCTTTCTTACCAAGACATCATCAATCTCATTATTTTAGTTCATCACGCCTTCTTTTATACCAAGGCCTCATCATTAACAAAGAGATTAGGGTTTTGCAAGATTTGGGATTCAATAACTTCATCATGCTTATATAATCAC-ATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAACAGGGTTTACAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTACCTCCACCGAAGACTA</genome_strand>
        <mrna_strand>TTATGTTCATTAGATTGAGTATA-TAACATCTTTCAAGATTCATTGTCTTTATTTCTCTTGTGTCGGTACGTGACATTCCGCTCCNTCATATTCATTAATCTTCTTGTGTCGGTACGTGATACTCTGATCCCCTAAATCTACGTGTCGGAACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCTGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATGTGTTGGTTCGTGACACCTGAT-CCCTTAATCTACGTGTCGGTTTGTGACACCCGATCCCCTAATTCTACGTGTCAGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAATTCATCAAGCCTTCTCCCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATTAA-AAAGAGATTAGGTTTTTACAAGATTTGGGATTCAATAACTTCATCATGCTTATATAATAACAATTATATAGTTACATTCATGCAAGCATACAATTAAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCTCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACAATAACCTACCTCCACCGAAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="16540" stop="15538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16240" g_stop="15837" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16240" e_stop="15837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="18665" stop="19977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18965" g_stop="19677" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18965" e_stop="19677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACAATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACAGTGCATCTAGACAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATGAATACAATCACAAAGATATCCTAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGTCCATACCTGGTTCTAAAAATAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGATAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGGTACTTGTTCTTAATAGTTACTTTGTTCAACTGCCGGTAGTCTATACACATCCGAAAACTCCCATCCTTCTTCTTTACGAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="18665" stop="19860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18965" g_stop="19560" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18965" e_stop="19560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACAATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACAGTGCATCTAGACAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATGAATACAATCACAAAGATATCCTAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGTCCATACCTGGTTCTAAAAATAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGATAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGGTACTTGTTCTTAATAGTTACTTTGTTCAACTGCCGGTAGTCTATACACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="18665" stop="19790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18965" g_stop="19490" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18965" e_stop="19490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACAATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACAGTGCATCTAGACAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATGAATACAATCACAAAGATATCCTAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGTCCATACCTGGTTCTAAAAATAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGATAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="18736" stop="20013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19036" g_stop="19714" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19036" e_stop="19714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACAATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACAGTGCATCTAGACAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATGAATACAATCACAAAGATATCCTAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGTCCATACCTGGTTCTAAAAATAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGATAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGGTACTTGTTCTTAATAGTTACTTTGTTCAACTGCCGGTAGTCTATACACATCCGAAAACTCCCATCCTTCTTCTTTACGAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAA-GGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="18736" stop="19694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19036" g_stop="19394" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19036" e_stop="19394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACAATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACAGTGCATCTAGACAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATGAATACAATCACAAAGATATCCTAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGTCCATACCTGGTTCTAAAAATAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="19185" stop="20442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19485" g_stop="20142" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19485" e_stop="20142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGGTACTTGTTCTTAATAGTTACTTTGTTCAACTGCCGGTAGTCTATACACATCCGAAAACTCCCATCCTTCTTCTTTACGAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAA-GGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACTAGACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="21280" stop="9722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20980" g_stop="20808" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20807" i_stop="20064" i_length="744">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20063" g_stop="19537" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20980" e_stop="20808"/>
          <exon e_start="20063" e_stop="19537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAAGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGATTTCACAATGGCATCGACATCAAAGAGGATTTGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTATAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATACTTGACTCTATAGAGTGTTATGGATGTGGGGAGACTGGGCATATTAGGAGGAATTGTCCCAAATAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCATTATTCTGGAAGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGGGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAATGGACAAACAAACGAAAGGGCCCATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCTTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATACGCCTATTCGTGTTTCTATTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTCTAGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATA-CCCCTTATAGAATGGCTCCCACGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTCGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGTATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTT-GT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="19254" stop="20614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19554" g_stop="20314" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19554" e_stop="20314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACGAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAA-GGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACTAGACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAATAGAAACACGAATAGGCGTATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATCAACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="19254" stop="20513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19554" g_stop="20213" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19554" e_stop="20213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACGAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAA-GGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACTAGACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAATAGAAACACGAATAGGCGTATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="19947" stop="21336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20247" g_stop="21036" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20247" e_stop="21036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCTTCCAGAATAATGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGCCCAGTCTCCCCACATCCATAACACTCTATAGAGTCAAGTATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTATAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCAAATCCTCTTTGATGTCGATGCCATTGTGAAATCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACTTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="19950" stop="21082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20249" g_stop="20782" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20249" e_stop="20782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCTTCCAGAATAATGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGCCCAGTCTCCCCACATCCATAACACTCTATAGAGTCAAGTATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTATAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCAAATCCTCTTTGATGTCGATGCCATTGTGAAATCATCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATCAA-CAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="20024" stop="21320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20323" g_stop="21020" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20323" e_stop="21020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCTTCCAGAATAATGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGCCCAGTCTCCCCACATCCATAACACTCTATAGAGTCAAGTATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTATAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCAAATCCTCTTTGATGTCGATGCCATTGTGAAATCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACTTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="20585" stop="21903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20884" g_stop="21603" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20884" e_stop="21603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTATCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGAAAACGTGCCCATGTCCAATGAGGCATCCATACGAGGAGACATAGTGGCTGCATGTTGTACCTCTAAAATCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCT-TACTACTTCTTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="20587" stop="21852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20887" g_stop="21550" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20887" e_stop="21550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTATCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGAAAACGTGCCCATGTCCAATGAGGCATCCATACGAGGAGACATAGTGGCTGCATGTTGTACCTCTAAAATCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="21907" stop="20754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21607" g_stop="21054" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21607" e_stop="21054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGATTTTAGAGGTACAACATGCAGCCACTATGTCTCCTCGTATGGATGCCTCATTGGACATGGGCACGTTTTCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGATACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="20942" stop="21947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21242" g_stop="21648" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21242" e_stop="21648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGAAAACGTGCCCATGTCCAATGAGGCATCCATACGAGGAGACATAGTGGCTGCATGTTGTACCTCTAAAATCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAAGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCG</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351546" ref_strand="+" ref_description="SGN-E351546 [cTOS-12-I18]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttggtatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="42189" stop="21417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41889" g_stop="41559" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41558" i_stop="22111" i_length="19448">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22110" g_stop="21716" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="729" r_length="397" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E351546" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41889" e_stop="41559"/>
          <exon e_start="22110" e_stop="21716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAATCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCGGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGATAAGTGTGGGTGCCAGTCGCGCCCGGATTTGGGTCGTGACAGTAATGTTCATGTGCAACATTTGGTTGCTAATTTAATAATCAACTTGTTAATAAAACAAAAATTTAGTTGACTAGGTGATAATACTATCATTAACTTTTCTAATTTAACTATAATCAAGTTGGTTGCTTATAAAAGAAAATATGGATTAAATAAATACAAGAAGGGATATCAATACAAACTATAAATTGTAGGTCTTAATTTCATCATAGTTGCACAATACACATTTGCTATGGATAAAAAAACTATACTTCTTTTTGTTACAATTTTGATAATATGTTTTGCAATTAGCACTGCTTCTTCTTCTTCTTCATATGATTATATCATGTCAAGAAAAATGTTGCCTCAACTTATGTGTGGTTGTTGCGTACAATGTGGGTGCGTAGATTGTGACATTTGTTGTTGAGGGAAAACGTTAACCATTGTTGATCTGTAACATGTTGTCTTTTTTTTTTTTTTAATAAACAACTAGCTAATACGTACATTTACTTGATGTAACTATCCTAATTATTGATATATGTCGTTATATATACTATTTTGTATTGAACGATGTTATATTGAAATTTCTGTCGTTTATTTATATCGTCTGTCTGTTTATTTGGTTATTTTTTTTTTTTAAATAACATGAGTTAACCACCCATCTATAGTAATTTGTTTTGTTTTAAACTCTTCTACTTATTTGCTTTAAGCTCTCAATTATGTTAAGTCATCCCAAGATGACTCCTAATGAAATGATAAATGGAGTACATTTTATCTATCTTGTAATGTTCTTGAGATATAAAAGTTAAAAGAAAAGAATATTAATGGTAAAGATTTACCATATAAGGAAAAAGTAAATTGTATTTCTTAAATCAAAATTACTTTTTTTCGCGAAATATTTAATTATACATAAAATTTAAGAAAGAAAAATAAAGAAAAAAATCATCAATTAATTAAGACTATGAAGAATATATACTATAATCAAATGCTCCCTCCGTCACAAAATGTTTTTTTTCTTATTCAGAATACAAAAATTAAACTAATTTAAATGTTTAATGTGAACTAAATATAATATTTTTATTATTTAAAAAATAATTTACATAATTAAAAAATTATATAAAAAATATTATAAATCACACATAACTAATAAATTCAAAATTCAAGAGATTATATAATAAAATAATAATAATTCTTTGGCTGTCCCAATTATAACTAATAGTATAATCTTTTGGACATCAATGCCCTTGATGATATCATTCCTGATATCAGCAATATATACAAATTCAAAGCTAGCATGTGAATTCATTTATTACTTACATATATTATTCAAACAAAGAGGCTTTGGATCAAAGTCTTACCACAATGACCAAGTTGATTATAGCTCTAGCCCTCCATTTATCCATAAGCATCATTTGAATATCTAAATCTCCCCCCCCCCCCCCCCCCCAATAAATTTATGTGGTTATATTTAATTGATTGATATAAAAGATAAGTTTCTGTTGGTTTTAATTGAAATATGTGATTTTAAATTATTATGATCATAAATTTATGATATTTAAGAATAAAATAGGTGTTTAATGTTGACTTGTATTCGGCTTTAGAAATGAGTCATCATTTTTTTCGAAACTGAGTAAATAATTAAGGAAAATAATCACATAAATGAAATAAAAAAGGAAGTCTAGGTGCAATGACAAATTAAAATTGTTATCGTGTGACTAGTAGTTCTTCACTAGTTCAAATTGCAGAAACAACCTCTCACGAAAAACACAGTAAAACTCCCATATCTGACGATGAAAGTTATTGTCGTGCAATTAGAAAATTGCGAATTCAAAGTGCAGAAATACCCTTCTCAAAAATAAAAAGTAGAACTGCATCAAAAGATATGATCTGATCATTTTAAAAATTCTATCATACTATAAATTTAATACATTGAACTATCCTAGCTTTTTATTTTCACATGATTTCCTCTATATAAAGGAGGACCAATGAGTTAATATTTCACTTCATAACTATAAAATATTCAAATATAGCACATAGTCTCTACTCTCTTCTAGTGCCAATGGCAAGAACCACAATAGCAATTTTTGCCCTTTTCATTGTTTTATCATCACTTTGCTTCAACCCAATTAATAGCTCAAGGGATATTTCTTTTGATAATCCATTAACACAGAGAAACCTCTTATCCCAAAAGACAAGTGATATTCATCCTGATGTTGCTGCCAATTGTAGAATTTGTATGGAACAATGTGGATCTTGTACTTGTTGCATTGCAAAATTGAAGCATTAATTAATATTACTTATGTTGTAAAACTATATTGTTGTTTGTATTGTTTCTAGTACGACTTTTTTTATTATTGTATTTGAATTTAATATGTTTTATGTGAGCGGAGAGTCTATCAGAAATAACTTCTCTATCTTCACAAGATAGAAGTAAGATTAAATACACAAAATCTCTCAGACTTCAATTATTTGTAAGATTACAATAAACATGTTTGTAATATTTCGTGTTAACTGTTGCCAAATATTCATGGCTTCATATATTTTCCTTTTACTTCTACTTATCTATGTTATGTCTCTCTCATAATTTCATTTTTTAGATCGGATCGATGTTATGAAATTCATTTTTGATAAGAAAGTCATTTTCTAGTGTTTGACACTGAAAAATCATGTCTTTCCTTGCTTAACAGGAGGATTTTTTTTTATAAGTATCTCCTATTAATGTATTTTCTATTACTTTCTCAAAATAACACTTCAACATTATTATTAATTATTATTACTGAAACATTTAATCATAATATATATTCTTCGATGTGCTGCTATTATGATCATTATTATTATTAAGGGAAACTTTCACATATGGTCACTTAAAAATAATTAATTACTTTCTATAGCTTTAGTTTGATAATTACATTTGTAGCTACAAGTTATTTGGAGGAGAGAGGCGAGCGAGATTGGGAGAGAGAGGAGAAAGGCGAGAGAGAGGGGAAAAAGAGTGGGAGAAAGGTGAATTGTATATGTATATTGGTTTGATTATTGTATATTTTACATATGTAATTGTATATATGGCAAGAGAGATTGGGAGAGGGAGGATAGAGGCGAGCGATACTGGGAGAGACAAGAGAGCGGCGAGCGAGATCGAGAGATGCGAGCAAGAGAGGGCATAGAGTGGGAGAGATGTGAATTATATTTGTATATAATTGTATATAACTGTATATTATACATATACATTTGTATAAATGGAAAACGAGATTGGGAGAGAGAGGAGAGAGGCGAGCGAGATCGAGAGAGGGAGAGAGAGGCGAGCGAGAGAGGACAGAGAGGTGAATTATATATGTATATAGGCTAAAACATTGTGTGTGTGTGTATATATATATATTTATTTATTTATTTGTATATCCTGACGAATTATACATATACAAACATGACTAAATATACAAACTCGAAGTCAAATCAATGTATGATGTTAGTCACGAGTGATAATTATAACAAATTATAGGTATGATGAGTAATTAAATAGTTTAAGTTTGCTTATCCGCATAATTTTCCCTTTTTATCATCATCATTGTTATTTATTTATTTATTTTTCACCTTGAATAATTGCCTCATGATTTATCAAGTCAAGTAAAATTAAAAAGGGGTAATTGAATATTTCTTATTTATTTTTCTAATGCCACCTAAAAGATTCTCTTGAAAATTCCACAACTTTATTTTCCTTCTCAAATTTTTTTTACTAAAGTAAGTATTTATATTGCTTCATTGCCGACTTCAAAATAATCACAAGAATCTTGAAAAAAAAAAGACCAAAAAATTATCAACGATGCCTATAAATAAACAACTTGCATGAAGGAAATTAATATCAATAACTTTTAGAATTTATATCAACCATGACAAAAATACTTCAATTTATCACAATATTCTTAATGACCCTTTTCTTACTTTGTAACTCTTCGTCTAATTATGATAATTCAATCGTTACTGGTGATGATGGTGAATTAACATCGTCTAAAATTATCGAAAATTATGATGATAATATTACTAATGAATTGCGAAGACGAAGAATGGAGCGTTGCCCTTGCTATCCTTGTTGTGCTTTTCCATGTCCATGTTCTTCTTAAAAGAGGAATTTTTCATGATCTTTGTTGTTGTGTTATTGATAATCCTTTGTTTTTAGAATAAGATTTTGGAGTTTTATGAATAAGAAAGTAAATTGATCATGTCATTGATTTGGTGGATTTATGTGAAAAACATATATGGTGTAATTAATTAAACATTCTTGAAAATAATAAATCATTTATTTTTTCAATGCATAGTATGTGTTAGGGGTGTACATGGTCGGATTGGTTTTAGTTTTTCAAATATCAAATCAAACTATTTGTATCGGATTTTTAAAATTATAAACCAAACCAATAAAACTCGGATTTTTCAACCTCAAATTTTATGGATTTTTTCGTGTTTTCAGGTTTTCTGGTTTTTTCGGATTTTTTCCTTTGAAGTATTCATACAAACATAAAATTTACTTGTACTTAAAATATTTCTTCAGTCTTCCAAAATACAACTATCGAAGGTGTTGCTTAAGAATATAACACAAACAATGATATGGTTAATGACACTAAAATATCCAATATATATATATATATATATATATATATATATATATATATAATGATAATAAAATCGCGTAAAACAAATATTGCCAATTAACAAGTCATAATGAAATGATCATAATTTAAAAGTATTATTTTATGCTAAAATAATTTTAATAAATATTAGTTACATGACTAAATATTAAAGAAAATTAAAATTAGATTATATATTTTAATTGTCGAAACCAATGTAAAAACAAAGAACAAACATTCAATATTATTGTCATTCTTAGGGTTAAATTGATTTCCTTTTTGCATTACTATTAATTTGATTTTGATTGAAGTTTTATTATAATTATCAACATTTGTGGACTATAATCTTTACGGATCCATTCAAAATTTTAAGTTTCAAACTTGAAATAATATATTAAAAGATTAAAACTATGAAAAATATAAGAAATATTTAAAATCGATATCAAATGAAATATTTTTATGTATAAAATAAAATTTTAAATTATATATATAATGTTGGATTGGTTTGGTCTCGGGTTGATTTTTTTAGTTAAAACCAAACCAATCCAAATATACTCGAGTTCTTTTTTAAACACCAAATGAAGTCAAACCAATCACTAGTTGGATTTTTTTTCTCGATTTACGATTTGATTCGATTTTTGATTTGATTCGACTTTTGATTCGATTTTGTACACCCCTAGTATGTGTTTTATATTTGAGATTGCATGTTCATTTCCTTCCTTCTCTATTGTGTTTTATATTTGAGATTGCATCTTCATTTTCTATCTTCTCAGCAGAATTTAATTTTTATACACTGATAATTATAAAAAGAATGGTGGGTCAAAAATACTCTTGAACCATTCGAATAACTCAAATATATCCTTGAACTATATTTCGGCTCAAAAATACCCTTCCCCTCAAACTATAGGGTCAAAAATACCCTTCCCTTAGAACTTATGTATTTTGTGAAATCGTTCTAAGGAAATGGAGAAATGAGGAAAAGGGGTTCTATGTTTCAAGTAAAATGGTTTCTAAATTCTACGAAAAATGGAGAAATTACGGATAAGTTTATTAGTCTATGTGGCATGAGTGGAATTCTATTGGCTCATGTGGCATGCCATGTGACATCCACATGTCATCTAAGTCACGTTTGATCGATTCGGTTAATAAGAAGGGTATTTTTGACCCAATAGTTTGCCGATAAGGATATATTTAAGCCGAAATATACTTCAAAGGTATATATGAGCTATTTCAGATAATTTAAGGATATTTTTGACCCTTTTCAATTATTAAAAAATATTCTATATATTTGATTATTTATGTCATCAAAAAAATTATTACATATCGATATCCATAATAAGTGAAGCAAGTTACATTGGAAAAATAAGACAATTAATTGATTTACAACAACAATTCAAAGTAAAGTGGTAGCTTCAACTTCTTTTAAATTGACGGTGCATGTTATTGTTACGACCCGATTTCAAAAACTAAAGGGTTTCGAAGCCAATTTCGCAACTTTGGCCAATTTTGCAAAATTTTAATTTTAGGAAGTTGCCACTTAATCTTTTAGGAAAAATTAAGAAAACCAAATAGATAAAAAAGGGAAGTTTAAAAGAAAACATAAAATCAGAGTTTTGGGTAAGGGTTCAAATAATTCTCTAAGGAAGGGCTTAGGCACCTTAGAGAATCCTCTAACACGCGGTTGACCAACGGATTTAAAAATTTGGCTAATTTTATATATAAAAAAAAAATTTAATTAAAAAAAATCTTGGTTGATACTCATATAAAAGTATTTTGATACTTCTAAAAATTTTAAGATTTATCTCAAATTCTTGTCCATAGTCATATTTTGAACCACACAAATGCTTCAACACATAAATGTGAATTGAAAGACCTTGTTTAAAACAACTATAAGAGGATATTAACGATCCTCAAGTCATTCATACAAAGCTCTAAATTAAAATAAAAAGCCACTAATTTAGTTTAAGGAACTTGACAAATTTTTTTTCCTATTCAAAAACTTGAACTATATAGTTAGTTTAAATTCATAAACATGGATCCAAAGCTTTTCGATAACTATAAAAGAACATAAAGGGTTCTCAAGTTATTCTCATAGGCCTAAATTGTCCAACTTAAAAAAAAGCTTCGAAAACATAAAGTAAACAAGTAACGAAATGGAATAGCCATTCGAAAACCTCCAAAGGATTCATCTAAGTTTTAAAAAAAGTTAACAACAAAACAAAGGGTTAGCATTCACAATGACCAAAATAATAACGAGAAGACAAACATAAATAATAAATTATAAAACTGAAATTTCGGGGGCTGAAATGTCGATTTGTTACTTCATCGATTTTGGTTTTTAACCCCCATTTCATGCTTCTTGCTTAGCTGCTGCCGGGATTACTATATAAATTGGACTTGAATCAACAATTTGTGTCCCTTTGGGGACCTGTAGTTGCTGCTTCAGGTTTGGCCTTTTAAGGCTACTGCTGCTGTTGCATTTTTTGGGTGTTTAAACCCAATTTATTGAGCTATTTGGAGCTGTTGTTGCTGCTGATTTTTGGGTGTTTAACCCAATAACATGACTCCCTTTCACGACTCCGAAGAAGGTTGACTCAAGAAGTGGAATAATGCAAGAGAAGTGGAGTCCATTGAACTCGAAGTGCTCATGCAGAGTAGAGAAAAGGAAGAAAAGATAAGAATTAGAATCAATCATAAATAATATTAATCTAAGCCAGTGAACATTCAAAACTAGATAACATATCTCAAATAAACAGTTTAAGACACAAAATGGAAAGGAACTTTAAATGAGCTCACATTAAAAATCAAAATGAGACCAACATCTATTTGAGAAGCAAAGAAACCTTGAGATAATTTGAATTACACGGGGCATTTAAAAAGAAAACAAATCGACTAGACCTAAAAGAGAATAATATCTAACATAAGAACAAACAAGAGGCTTCTTATCCATTTCCGATATAATTAAGAAAACTAAACTATAAAGAGCAAATCACCTGTATTTAAGAAACTATTAAGACGAGAAATAAAATACTAGAACCAAAGTTTTGAATCCAATTACCCAACTTACATATTTAAAGCTTTCAAACCAGTGAGTTGTTATTCATTACACATAACAAAACTAAGCATCTACAACAGGAATTAACGCAGAACAGAAACTATACAAAGCAAGTATAGATGGCATAGAACATGCTACTTAACAAAATAAAGAGGTTTATGATACTAACCCATATAAAACAACAAAGAAATCATACTATCAAATATTAAAACGACATGCATATCCTGAAGCATTTAATTCAAAATCTAACAGAAAGGAAAGCAACCAGCAACGTCTGGGGAAAAAACATGGTTATGTAATATTGCTAAGGTATGCACAACTATGGATCAAAGAAGCTAAGGTAGGAAATAAAGACATTTTTCATATCAATAGCAATCAAAACGTTTTGAAGACAATAAGAAAGCAACCCAACAACTAATTTTCACCTTAATATAACAAAACAGCAGTTGCACAACCTAGTATTTATAAAACAGATACGAGAAATCAGGCTTTGGCAAAAGGCGAGGTGATAATCTTTATGCAGAACACAACAACTTAAGGCAAAAAAAAAACCAACTATATCGCACAAATTTCCAACCGAATAGAGATAATAGTAAGTGGAAACACATGTATGGATTTATGAACTTGATGAAATAAAGAATCACATTGACATGGAAAATAACTTTCAGCAGAGCAAAACATTTGAACTCCTTCAAAATTTACTTAACTTTAAGAAGACTTCCACTGTCATTCACACCACTAATCATATTGAATCTAAACAAATAACAACTCTAGAATGCAACACTGACAAAGGGCAAGAAGATTACCTGGTTCTGCGCAGCGACGAGTCTTCCAAGACGACTCCACCTCTTCAACTCGAAAGCCACAAAACGCTTTAAAATTTTGAACTATGGGACCAAGAATTCCCAAAATTTTATGGGTACTCTTTGGTCTCCGAAAATCCTCTCCTAAAACAGTGAATGAAGAGGGTTTATATAGGGCCACTTCTGGGTTGGAATTGAGGGGGAAAACGATGTGGGAATGCCTCACAATTCAGAACTCTTAATGGATAAGGTCGAGGGAGCTGGAATTCGTACGAATTCTCAACGGATTCAGAACCAAGGCCATCCGATTATGAGTAAGGACGAGCGAGCGACAGGATTGAGACACCTGCTCTGTTCGGGTACGCCTGTACGAGACGATAAGGAGAGCACGCGGTGTTTGCTGATTTCGCGTCTGATGCGAGCTGGAGTTGCGTGATTTTTTGGTTTTTGTCGCGTTGCTTGTGAGTCGTTTTGCTGAACAAGGAGAAGGGGTTGGATTGTACTGGATATTTGTTGGGTTATTGAATTGTGGGCTGATGGGCTTCTGGTAATTGAAACAAATGGATTGGGAATATTGGGTTAGTCTAATTGTATTGGAATGAATTTGTTGATAGTATTGCATGAGAATTAGAGAGTTTGGGCCGGTTCGGATTTGGGCTGCTGGAAAAGGTCAAATAAAATGTGATAAATGTTCCCAAACTTAAAGTTGTCTACAATTTGACTAGGTTTCGGCCACATATATTTAAATTAATTAATTAGAAATTAAAATGTAGCCAAGCTGATCATAGGATAAGCTTGTCTAGTGATTAAATAAGACGAATTGATATAATTAACTTACGAGCTTCTTAATTTTAACAAAATAAAATAATTAGTTTGAACGTAAACTTATGATTCAAAAATTATAACCATAATTTAACTAAACTAATTTAACAAAATACCTACTAAAACAATGAAAATCTTCACGAGCTGATTTTCGGATAGTTATAAGATATACTAAGCATACATATCATTTAAAAATCGTATAGGGTGACTAAACCATTTAAAATAACTTGAGAAAATATTTGAATTTTACAAAGTCAATTATTTTGAATCTTTTGGAATTTAAGAAGCTCGAAAGTTAACTCCTATCGTGGAGGGGTCAAAATTGGGTGTCAACAGTTATAAATGAGGGAAAGATATAAATATATCGTCGAATGCGCCTCTTGATAACAATATTTCATTAAAACATCATTTTTTAATTTAAAAATCAATCTTATATTTTATATTATATATTTTCTATAACAATAATTTTCTTTAACAAATACAAAATATCGAAATAAAAGACCCTGTTATTGAGAAATTTGATTGTATTAAAAAGAAATTATTTAATTAATAAATAAAGAAGAAAATTAACAAAAAGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCATATTTTTTCCTCTTTTTATTTTCCATTTAATATTTTTTATATAAGAAAAACTTGTGTAAAATATTCTTAGATTATGGTTTATAATATGTCTACTTTATTAAGTTTATATAGATTGTAATAACAGTTATTTTCTTATATAAAGATATGATGCTACTAATAATAACTTGCGATTAACTAATAAAAATTTGTTGAAAATGGGTAATTAGTCTATCGGTGTATAAGTATTATTCATGCATGAAGGATTCGGGGAAGGACGTTAGGACAAAACTTTTAGAGGTGTAATGTAGATAATATATCAGAATACGAATATTAGTAATTGTAAGATTCAAACACATAACCTATAAATCACACAAAGATAATTTTATCATTACTTCGAGACTCCCGTATATTGTATTAGTTTGGACAGAACAAAACTCTTTCTGATGGTTATGTTTTAGTTAAAGCTTTAGAGTTTAAATAATTGTTAAAAAAATGATAAAATATACGCTGAATGATAATAATATTTTTAAAGCTATCAAGTGAAATTTACATAGATTAATAGTTAATTATGACCTCTATTCTCCATATATACAGATTATAATTTGCTATCCGATTAAAATTACTAATAAAATTAAATTATTTGTTCTTATTCTGCAGTCTGAAAGATTCTTTAAAAATATTATAAGACAAAATCACTTTGTAAATTTAAATTTATTTTTATTGTTATACTATACTTCTAATTTCAAAGACATGTCTCTTGTAAATGACAAAATTTTGACCTTTATACCATAAGGGGTCGTTTGGTTACAAGGATTATTAACGGTTATTTCAATATTAGAATTTGGGATTAAATTTGTTCACCATTTAGTTATGAGCCAATATATATTAGCTTAAACTAGATTAAAATTCATATAAAATCGAAGGATTATCTACCGTATTTTTTTTTCCAATAGGAAGGGAAAAACACTAGAGTTTTTCTTTTATCTGTTTAAATTTTGATGGATAAAATTATGTGATACTTGTTCTGGTAACTTGGTAAGAGGTAGCATACATATATATATATATCCACGAAATTAGTTATGAGTAAACTGATTCAGACGTCATGATTATATATGTATATAAAAGTGAGATTATTTATGTTGAGATATCGTAATTTTGAACCAAACGACCCCTAAATTATACTCCATGAAATATACTACTATATAAACACTTGAACATAGGATAAGATGATTCATCTATATAGCTATTTAAACTCTTGAACCATGGCAAACAAAAATTTAGTGTCCATTTTTGCAATTTTCTTGATTTTCCCCCTACTTTTCTTCATTGGAAACTCTTCTTCTTCTTCTAATAATAATGATGATAATTATATAAGTGATAAATTTGAAACTATAGACAATTACTTCACTCCAATATCAAAGGGCTTTTTTGCTGAGCTTCAACGTAGAAAAATGGAAGTTTGCTCATGTACACCTTGTTGTTACATATGCCCATGTCCTACTTCTTAAAAGTGGCTATTTAATAAACTCGGAGTTCTGCTTATATATGTTGATAGTATAAATAATTTTCATGTTACCAAGTCACTTGTATTTGTTTTAGCAAGTTATTGTAACATAATTTGTACTGTTTTCAAGATTATAAATCCGACCACTTTATTCATATACGGTGGTTTAGTGTGGAGATGTCTTTCGAGTGAACTGATTGCGTGAAAAATTATTTACACTATCGATGGATATTAGTTAAACTCGAAAATACCTTAATGCAATATCATGTACCCCTTGTTTTTGCTTTATTTTCGGATCAAATTATGTAATAACTTTACCTAGTACGAATAAAAGTTTCCTTTTGGCCAAAAGAAGAGGTCACTCTTATATATATTGGATTGACGTAACGTGCATTATTTTCAAGATTATATATTATGTATTTAATTTTTTACGTATGATGATTGTGTAAATATATCTTTTGGGAACGTGATAGCATTTACTTATCTTCACTATCGGTAGATGCTAATTAAATGTTAAAAAGTTTCCTTTGTCACCTTTTTCTTGGTTCACTTAAAAAAATATGAAAGAAAAAGAAAGAGGTCGTTGGGCGCCATAATATGTATTGTTTTCAAGATTATAGATCAATTTTCTATGAAAAGAGATTAATTACGTGATCTGATAATGTGAAAATTAATTTACCTTTAATTTTTTGTGTAAAACAATAAATTCGATGGTTTACAGATGAATTAATATTCTATAAACTATCAAGTTCCTAATGTTTGAATTGTATGATTAATTAATTAAGAGAGTATAAAGTTTAAACCCATTTCTGTAAGATCTTTTTGTCCCTTTAAAATAGATACTTCTAATTTACTACAAAAGAAAATATCAAATTTATCACCAGAGCTACTAAAATGGGGTTGGCCCAGTTCGACACAATCCGTTATTGAGGTAGAGTTATGATATGATTTTTCAAGCTCATTTAAAATTAGTGCTTATAAGTGTGACTCATATAAGCCTTTGACTCTTGAGGCTTGATCGTAACTGCGCTCGGATCGGCCTATGGGCGAAAATATTTATTTAAGGGTAACTTATAGAAATCTCACTAGTGTATGAGCAAATTAAGGATAATTTACAGAAATCTCACTAGTGTATGAGCAAATTACATAGATGCACACTATGTTGTATTAATAATACAAATCTTATCAAATTTTGATGCATTCAGATACATGGACTCAAAAATAGGTGTAATTTGTTCGAGATACACTCTATCCAAGTGAAATCGTATGTATCTAGAATACACATACAAATTATGCGCCCTTGCCTGCCCCCCCCCCCCCTCCCCCACACACACAAACATTTCGCTCGCTACTCTCTTATCTCACTCGCGTATGATATGCATCACACCAGATACATGAATCTCATGTATCTAGTATCCTAAATACATGCTAAGCACACTAGATCATTTGCTAGTGTTATTGAAACAATACAATTGTTTCCTATATTTAATTTGTAATATGTACACAAGTTTAAGTTTGAAAAGAAAAAAATGATAAAAAGACGGGCTAGCCCGCCATAAATTGCACGAGCCTTATAGGGTTGGATTGAATCGATTGAGCATTTTCAAGTTCTGCCAAATGGAGGACCGACTCGACCTAGCCCATCAAATTCCTTGACCGCGAGGCTTGGACTGGAGTGGCTGACCCTTTTTGACAACTTCATTTGTCACATTCTATTTTTTTTAACCTTCGATCATATTTCATTGAAAAAATATATAACTCGAAATTTGAGCTCCAAACACTTGCTTGATCGATATAATTAGGCTAGTTAATCATATAGTCAAATATAAACATACATTTAATATATAAATGGGGATGAGATGCTTATACGATAAATTAAATATCGATGATAGGCGATAGAGAAGGTTATAAAGGCGTAAATCTTGAAAACACTTTAGCATAAATCAAAGCGTCTCGTTCTAAGTGGAACCGAATCATAGACAATTACATGATTTTTTTCTACACAGTTTAGTCAAAACAATACAATTGGTCTCTAATTTGATATTTCAAATATATATATATATATATATACACACACACTTTTGTCGACACATTTGATAAAAGATAAGGTCTGCGTACAATATACTCTAACAAACTATTGAAATGATCAAATATTTAATATTAAAATTGGAGAATCAAATTTTGGAAGAAAGTTTGCATGAAAACGATAAACTAACAAATGTATCAAATATATTCGAAACAATAACAAGGAAAAGATATACACTATGTATAATATTTAATTTACATAAGTGATAGATGATAATTTTTTATGAATTAAATAAAACATGGAAGTTATTACCAAGATTGGTTCCTTATATATATAACACCTTTATTAAGGCATGTTATTTATCAATATTTGGTCATCTCTCAAATATACATCAAAGTCATCATGACCAAAATAATCCTACTTTATGCAGTTGCATTTCTCACGATATTTCCACTCTTTTGGAACCATGGAAATGCAACAACTCCTCGCAAACTAGGGACACGTCAAAACGCAGTTACAAGCTTGTCAAATACATATAAAATAACTTATCGTGGATCAGGAGGCCAATATTTTCCAGTTTCAAACCTATTGATTCACGAAAATGCAAAAACTCCTCGTATATTAGGATCACAACAAAACACAGTTACAAGCTTGCCATATACAGAAGAAACAACTTCTGATGAACCAGGACATCAATATTTTGCTATTTCAAGCTCGCCAAATGATCATGCAAATGTAGCAACTCCTCACATACTAGGGGCACGCCATAATGCAGTTACAGGGGAAGCAACTTCTAGTGGATCAGAACACCAGGATTCTCACATTCCAAGCTCATTAGCTCATACAAATATAATAATTCCTCGAGGCCCACTTATGAATCCAAATGAAGCAACTTTTCCCAAGCTTGGGAAACGCGATAATCCAATTATAATCACAAGCTTATCAAATACAAATGAAGCAGTTGATTCTGGTGAATCAAAAATTCGTTCTTACCCCATTTCAAGCTCACCTTCTCAAACGATTATTGCTCATATTTTCCATCGTTTTTCCCCATCACAAATGTGGCAACAGGTAAAATTAAAGGCAACTCCTCGCAAATTATGGGCAAGTCGCCATAATGGAATTACAAGCTTATCAAATACAAATAAAGCAATTACTTCGCGTGGATCAGCAATCCAATACCATCCTATTTCAAGATCGTCAGCTCACACACATGCAATAACTCCTCGCACACTAAGAGCACGTTATAACGCAGTTACAAGCGCTTCAACTACAAATGAAGAAACTATTCAAAAGTATGGTGAACGTCAAAATTCAATTATAATTACAAGCTTACCAAATACAAAAAAAGCAACTAATTTTGGTGAATCAGAGCTCAATTTTCCCCCAATTTCAAGCTTGCCAACTCAAATAAATAGAGTATTTCCTCGCGATCCAGATGAGATAGGACAAGTATCATCAATTATCCATTGATCATACAAATGAAACATCTAAGCTCGAATAAGACTAGGTAATTATGGTTGATTATCTTGTATGTGTACAATTATGCTAAGGTGCTATGATAAATGCACTTATACATGTTCTGTTAATAATATAATGCATATTGTGCTTTATTTATCTTTAGTTACAATACATATATTGGACCTCAAACTTGACTTTAAATTTTAACTTTGACCTCCAACTTTCATAATGCACAAATAGACACTTTCACTATCCAATTTTTAAATAAATAAACACATGAGTCCTACATGGCAAAATACATGTAGGACAAAAAATGACATGTAGGACATGTGTGTTTATTTGTTCAAGTTTATACAAGTTTAAAAGTGTGTTTGGTATGAAGGAAAATATTTTCTAGAAAATGTTTTTCAATTTTCTCATGTTTGGTTGGGACAAAATTCTTGAAAAATGTTTTCCAAATCAACTCATTTTCCTCAAAATTAAGGAAAATGAATTCCCTTCAAAAATTAAGGAAAATATTTTCCAAAACTCTTCTACAACTTCAAATTACATTTTTTTTGGCAAAAAAATTAATTTTAAAAATATTTTTAATTTCAAAATATATATTTTTCACCGGATCATTAACGTATCCCGTGCATTAGATTAATTTATCAGCGCTTATTTTATTGTAGCCGTTTTGAGGAATTTTTTTTATTATAAAATTTTAAAGAATATATTGTAATTTTATCTTAAAAATATGTGACTTATGTAATTTGCCCATTATTAAATAGGAAGTCCTATTTGTATAAAAATGACGCAAAGTATACAAAGATAATTCTTAATAGCTACTCAAATTGTAACTACATTATGCAATTAACCAAACTTTAACTAAGAAGCTTCATTATGTTTCTAACTCTCAGCTATTTATGAAAATTTCACATTATTAAAATAACTTTCCTTACTAGCCATACGTGGGCCAAAACTAAAATGTTAGGCTCCAAAATAATGTCGGCATAATACATAAATTTATCTTTTAATTTTGTCTTATTTTATATTTATACTCTTCAATTTTGGATATGCACAAGTAGACATTTAACTTGTACAAACTTGACATGTTAGGCCTCGAAATAATTGTTCACTTCTTTGTCTGCGGTCTATATACAAGTGTGCCACGTCTAAGAACTTTCAGAACACTTCTTCACCTCATTATTTTGTGTATTCCACTCAACTCTTATTTACTCTTCCTATTTCTAATCATCGGGAAGATTCATCCTAGATTATTCCAGCAAATAGAAATGAATGGATATCAGATTAAAACGGAATAAGTTGATCGATTTATTAATTGATATTGGGATAAATCGAACAAAATTATTGAGAAGAATTTTAGTTTCGTCCCATCCCATTATACCGAGATGGAATCGAAACAGATCGAAATGAAATAAACGGGATGACACATATAGTTTTATCAAAAAAATTTTGAATTACGAAAATATGAATATTTTTTTTATTTTTTTAAGTTTAAATTAATAGTTCTTAAATTTATAACGTAATTTTTTAGTTAAGTTATTTTAAAGATATTTTTAATAAAAATTTTACTTATTAAGTTTGCAAGTTAAGTCTAATTAAGTTTTCAAGATTTAAATCTTTGAAGTTTATAAGTTATTACTTATTATTTATTAATATGTTATAATTTAAAAGTAATATTTATAACTTGTAATTAAAATAAAATAAATTTGTAATTTTAAAAATAAAAATAAAAATAAGGATAAAACAATTAAACAAATTAAAAAATATCAATTTAATTTATTTAAATTTGTATTATAAATTACAATTTCAATTTATAACTACTAGTAGAGTGCATAGTTTACGCAACCACATACTAGGAAGGGTTCTGTTTCAACTAATTCTCGAATGTAATACTATGTTTACTAATAGGGGTAGTTGGGTTACTTGTGTAGTATTTATTATTTAATATAAAATAGAAATTATAATTTATAAATATATAATATAAATTAATTAATAAATATATAATATAAATTAATTAATAAATATTAATTAATTGGAACAAGACCGAAACCGAAATAAACCGGTACCAAACCTCGGTTTTGTATCGTTCTGTGTCCCGGTTCGAAATGTCCATTTCCGTCTCATAGACAACCGAACCGGGACAAACCGCAACGAACTGAAACGGTACCGGACCGGTACCAATACATCCCGTTTCGTTACCCAGCCTTACTCAACTCCAATGGTGCGAGCTTTTATTATATTTGTACTGATGCTACTCTTAACTTATATAGTCTCATCACGCTTCATCATTGAGACTCTTTCGAAATTCGATGGACAATTTCCATTTAAACTTGATACATGGTAAGTATATACATATTTTATCTTTTCATATATAATTAAACTAGTAAACTTAGCCGCGCTATGCGCGGTATTACAAAGTTTTTATTTTTCTTTAATTTTTAAATCAATAGATTAGTTAATAAATTTTATTATTTAGCTTTATAATTTCAACTCAATTCATGAATTAATTTTATCAAAAAATAAAAACTTGTACGGTCAAATACCTATACTTTTTTTGGTTGAATAGTACCTATTCTTTTATGTTAGTTATAATATATAATTAAGAATTTATGACTTCATTATTGTAACGACCTGTTTAGTCGTTTTGAACAGCAGATTTTATTTCTAGAAAAACAGGTTGAGGCGACGGACCCCCACGACGGACCGTCATGGGCACGACGGACCTTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTTGTAACGAAATGGAAGGACGGACCGTCACATGTGTGACGGACCGTCACATGTGTGACGGACCATCACAGAGTCTTCAGGGGAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGAAGTTTTGGACTATTCCTACTTTAATTAATAAGTTAGAGGGTTAAGGTTAATAAGTCCAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGGGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTGGAATAAGAAAATTTGAAAGCACAAGAGAGGGAGAAAACGAACGAACAAGGAGAGAAGAAGAACAAAGCTTTGGGAATTTGCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGTTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAGTTGATAGAAGAAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGAGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGAAACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACATAGTTGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCATCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATCTCTATTTTGAGTTGGCCAATGATATCTACTCAGTACCCGTGTTTGGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGTCGTCATCTTCGACTCAACAGTAATTCTAGCCAGTCTTCATTACTCCGGATATAAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAACTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTTATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGACCC-GATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTC-TTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACC</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTT-CTTCTTGGTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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AGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGTCAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTCTTGC-CAGATGGGTAGAACTAGAGCAACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356696" ref_strand="+" ref_description="SGN-E356696 [cTOS-21-K7]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacatangagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttgagtccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="42189" stop="21491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41889" g_stop="41559" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41558" i_stop="22111" i_length="19448">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22110" g_stop="21791" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="655" r_length="323" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E356696" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41889" e_stop="41559"/>
          <exon e_start="22110" e_stop="21791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAATCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCGGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGATAAGTGTGGGTGCCAGTCGCGCCCGGATTTGGGTCGTGACAGTAATGTTCATGTGCAACATTTGGTTGCTAATTTAATAATCAACTTGTTAATAAAACAAAAATTTAGTTGACTAGGTGATAATACTATCATTAACTTTTCTAATTTAACTATAATCAAGTTGGTTGCTTATAAAAGAAAATATGGATTAAATAAATACAAGAAGGGATATCAATACAAACTATAAATTGTAGGTCTTAATTTCATCATAGTTGCACAATACACATTTGCTATGGATAAAAAAACTATACTTCTTTTTGTTACAATTTTGATAATATGTTTTGCAATTAGCACTGCTTCTTCTTCTTCTTCATATGATTATATCATGTCAAGAAAAATGTTGCCTCAACTTATGTGTGGTTGTTGCGTACAATGTGGGTGCGTAGATTGTGACATTTGTTGTTGAGGGAAAACGTTAACCATTGTTGATCTGTAACATGTTGTCTTTTTTTTTTTTTTAATAAACAACTAGCTAATACGTACATTTACTTGATGTAACTATCCTAATTATTGATATATGTCGTTATATATACTATTTTGTATTGAACGATGTTATATTGAAATTTCTGTCGTTTATTTATATCGTCTGTCTGTTTATTTGGTTATTTTTTTTTTTTAAATAACATGAGTTAACCACCCATCTATAGTAATTTGTTTTGTTTTAAACTCTTCTACTTATTTGCTTTAAGCTCTCAATTATGTTAAGTCATCCCAAGATGACTCCTAATGAAATGATAAATGGAGTACATTTTATCTATCTTGTAATGTTCTTGAGATATAAAAGTTAAAAGAAAAGAATATTAATGGTAAAGATTTACCATATAAGGAAAAAGTAAATTGTATTTCTTAAATCAAAATTACTTTTTTTCGCGAAATATTTAATTATACATAAAATTTAAGAAAGAAAAATAAAGAAAAAAATCATCAATTAATTAAGACTATGAAGAATATATACTATAATCAAATGCTCCCTCCGTCACAAAATGTTTTTTTTCTTATTCAGAATACAAAAATTAAACTAATTTAAATGTTTAATGTGAACTAAATATAATATTTTTATTATTTAAAAAATAATTTACATAATTAAAAAATTATATAAAAAATATTATAAATCACACATAACTAATAAATTCAAAATTCAAGAGATTATATAATAAAATAATAATAATTCTTTGGCTGTCCCAATTATAACTAATAGTATAATCTTTTGGACATCAATGCCCTTGATGATATCATTCCTGATATCAGCAATATATACAAATTCAAAGCTAGCATGTGAATTCATTTATTACTTACATATATTATTCAAACAAAGAGGCTTTGGATCAAAGTCTTACCACAATGACCAAGTTGATTATAGCTCTAGCCCTCCATTTATCCATAAGCATCATTTGAATATCTAAATCTCCCCCCCCCCCCCCCCCCCAATAAATTTATGTGGTTATATTTAATTGATTGATATAAAAGATAAGTTTCTGTTGGTTTTAATTGAAATATGTGATTTTAAATTATTATGATCATAAATTTATGATATTTAAGAATAAAATAGGTGTTTAATGTTGACTTGTATTCGGCTTTAGAAATGAGTCATCATTTTTTTCGAAACTGAGTAAATAATTAAGGAAAATAATCACATAAATGAAATAAAAAAGGAAGTCTAGGTGCAATGACAAATTAAAATTGTTATCGTGTGACTAGTAGTTCTTCACTAGTTCAAATTGCAGAAACAACCTCTCACGAAAAACACAGTAAAACTCCCATATCTGACGATGAAAGTTATTGTCGTGCAATTAGAAAATTGCGAATTCAAAGTGCAGAAATACCCTTCTCAAAAATAAAAAGTAGAACTGCATCAAAAGATATGATCTGATCATTTTAAAAATTCTATCATACTATAAATTTAATACATTGAACTATCCTAGCTTTTTATTTTCACATGATTTCCTCTATATAAAGGAGGACCAATGAGTTAATATTTCACTTCATAACTATAAAATATTCAAATATAGCACATAGTCTCTACTCTCTTCTAGTGCCAATGGCAAGAACCACAATAGCAATTTTTGCCCTTTTCATTGTTTTATCATCACTTTGCTTCAACCCAATTAATAGCTCAAGGGATATTTCTTTTGATAATCCATTAACACAGAGAAACCTCTTATCCCAAAAGACAAGTGATATTCATCCTGATGTTGCTGCCAATTGTAGAATTTGTATGGAACAATGTGGATCTTGTACTTGTTGCATTGCAAAATTGAAGCATTAATTAATATTACTTATGTTGTAAAACTATATTGTTGTTTGTATTGTTTCTAGTACGACTTTTTTTATTATTGTATTTGAATTTAATATGTTTTATGTGAGCGGAGAGTCTATCAGAAATAACTTCTCTATCTTCACAAGATAGAAGTAAGATTAAATACACAAAATCTCTCAGACTTCAATTATTTGTAAGATTACAATAAACATGTTTGTAATATTTCGTGTTAACTGTTGCCAAATATTCATGGCTTCATATATTTTCCTTTTACTTCTACTTATCTATGTTATGTCTCTCTCATAATTTCATTTTTTAGATCGGATCGATGTTATGAAATTCATTTTTGATAAGAAAGTCATTTTCTAGTGTTTGACACTGAAAAATCATGTCTTTCCTTGCTTAACAGGAGGATTTTTTTTTATAAGTATCTCCTATTAATGTATTTTCTATTACTTTCTCAAAATAACACTTCAACATTATTATTAATTATTATTACTGAAACATTTAATCATAATATATATTCTTCGATGTGCTGCTATTATGATCATTATTATTATTAAGGGAAACTTTCACATATGGTCACTTAAAAATAATTAATTACTTTCTATAGCTTTAGTTTGATAATTACATTTGTAGCTACAAGTTATTTGGAGGAGAGAGGCGAGCGAGATTGGGAGAGAGAGGAGAAAGGCGAGAGAGAGGGGAAAAAGAGTGGGAGAAAGGTGAATTGTATATGTATATTGGTTTGATTATTGTATATTTTACATATGTAATTGTATATATGGCAAGAGAGATTGGGAGAGGGAGGATAGAGGCGAGCGATACTGGGAGAGACAAGAGAGCGGCGAGCGAGATCGAGAGATGCGAGCAAGAGAGGGCATAGAGTGGGAGAGATGTGAATTATATTTGTATATAATTGTATATAACTGTATATTATACATATACATTTGTATAAATGGAAAACGAGATTGGGAGAGAGAGGAGAGAGGCGAGCGAGATCGAGAGAGGGAGAGAGAGGCGAGCGAGAGAGGACAGAGAGGTGAATTATATATGTATATAGGCTAAAACATTGTGTGTGTGTGTATATATATATATTTATTTATTTATTTGTATATCCTGACGAATTATACATATACAAACATGACTAAATATACAAACTCGAAGTCAAATCAATGTATGATGTTAGTCACGAGTGATAATTATAACAAATTATAGGTATGATGAGTAATTAAATAGTTTAAGTTTGCTTATCCGCATAATTTTCCCTTTTTATCATCATCATTGTTATTTATTTATTTATTTTTCACCTTGAATAATTGCCTCATGATTTATCAAGTCAAGTAAAATTAAAAAGGGGTAATTGAATATTTCTTATTTATTTTTCTAATGCCACCTAAAAGATTCTCTTGAAAATTCCACAACTTTATTTTCCTTCTCAAATTTTTTTTACTAAAGTAAGTATTTATATTGCTTCATTGCCGACTTCAAAATAATCACAAGAATCTTGAAAAAAAAAAGACCAAAAAATTATCAACGATGCCTATAAATAAACAACTTGCATGAAGGAAATTAATATCAATAACTTTTAGAATTTATATCAACCATGACAAAAATACTTCAATTTATCACAATATTCTTAATGACCCTTTTCTTACTTTGTAACTCTTCGTCTAATTATGATAATTCAATCGTTACTGGTGATGATGGTGAATTAACATCGTCTAAAATTATCGAAAATTATGATGATAATATTACTAATGAATTGCGAAGACGAAGAATGGAGCGTTGCCCTTGCTATCCTTGTTGTGCTTTTCCATGTCCATGTTCTTCTTAAAAGAGGAATTTTTCATGATCTTTGTTGTTGTGTTATTGATAATCCTTTGTTTTTAGAATAAGATTTTGGAGTTTTATGAATAAGAAAGTAAATTGATCATGTCATTGATTTGGTGGATTTATGTGAAAAACATATATGGTGTAATTAATTAAACATTCTTGAAAATAATAAATCATTTATTTTTTCAATGCATAGTATGTGTTAGGGGTGTACATGGTCGGATTGGTTTTAGTTTTTCAAATATCAAATCAAACTATTTGTATCGGATTTTTAAAATTATAAACCAAACCAATAAAACTCGGATTTTTCAACCTCAAATTTTATGGATTTTTTCGTGTTTTCAGGTTTTCTGGTTTTTTCGGATTTTTTCCTTTGAAGTATTCATACAAACATAAAATTTACTTGTACTTAAAATATTTCTTCAGTCTTCCAAAATACAACTATCGAAGGTGTTGCTTAAGAATATAACACAAACAATGATATGGTTAATGACACTAAAATATCCAATATATATATATATATATATATATATATATATATATATATAATGATAATAAAATCGCGTAAAACAAATATTGCCAATTAACAAGTCATAATGAAATGATCATAATTTAAAAGTATTATTTTATGCTAAAATAATTTTAATAAATATTAGTTACATGACTAAATATTAAAGAAAATTAAAATTAGATTATATATTTTAATTGTCGAAACCAATGTAAAAACAAAGAACAAACATTCAATATTATTGTCATTCTTAGGGTTAAATTGATTTCCTTTTTGCATTACTATTAATTTGATTTTGATTGAAGTTTTATTATAATTATCAACATTTGTGGACTATAATCTTTACGGATCCATTCAAAATTTTAAGTTTCAAACTTGAAATAATATATTAAAAGATTAAAACTATGAAAAATATAAGAAATATTTAAAATCGATATCAAATGAAATATTTTTATGTATAAAATAAAATTTTAAATTATATATATAATGTTGGATTGGTTTGGTCTCGGGTTGATTTTTTTAGTTAAAACCAAACCAATCCAAATATACTCGAGTTCTTTTTTAAACACCAAATGAAGTCAAACCAATCACTAGTTGGATTTTTTTTCTCGATTTACGATTTGATTCGATTTTTGATTTGATTCGACTTTTGATTCGATTTTGTACACCCCTAGTATGTGTTTTATATTTGAGATTGCATGTTCATTTCCTTCCTTCTCTATTGTGTTTTATATTTGAGATTGCATCTTCATTTTCTATCTTCTCAGCAGAATTTAATTTTTATACACTGATAATTATAAAAAGAATGGTGGGTCAAAAATACTCTTGAACCATTCGAATAACTCAAATATATCCTTGAACTATATTTCGGCTCAAAAATACCCTTCCCCTCAAACTATAGGGTCAAAAATACCCTTCCCTTAGAACTTATGTATTTTGTGAAATCGTTCTAAGGAAATGGAGAAATGAGGAAAAGGGGTTCTATGTTTCAAGTAAAATGGTTTCTAAATTCTACGAAAAATGGAGAAATTACGGATAAGTTTATTAGTCTATGTGGCATGAGTGGAATTCTATTGGCTCATGTGGCATGCCATGTGACATCCACATGTCATCTAAGTCACGTTTGATCGATTCGGTTAATAAGAAGGGTATTTTTGACCCAATAGTTTGCCGATAAGGATATATTTAAGCCGAAATATACTTCAAAGGTATATATGAGCTATTTCAGATAATTTAAGGATATTTTTGACCCTTTTCAATTATTAAAAAATATTCTATATATTTGATTATTTATGTCATCAAAAAAATTATTACATATCGATATCCATAATAAGTGAAGCAAGTTACATTGGAAAAATAAGACAATTAATTGATTTACAACAACAATTCAAAGTAAAGTGGTAGCTTCAACTTCTTTTAAATTGACGGTGCATGTTATTGTTACGACCCGATTTCAAAAACTAAAGGGTTTCGAAGCCAATTTCGCAACTTTGGCCAATTTTGCAAAATTTTAATTTTAGGAAGTTGCCACTTAATCTTTTAGGAAAAATTAAGAAAACCAAATAGATAAAAAAGGGAAGTTTAAAAGAAAACATAAAATCAGAGTTTTGGGTAAGGGTTCAAATAATTCTCTAAGGAAGGGCTTAGGCACCTTAGAGAATCCTCTAACACGCGGTTGACCAACGGATTTAAAAATTTGGCTAATTTTATATATAAAAAAAAAATTTAATTAAAAAAAATCTTGGTTGATACTCATATAAAAGTATTTTGATACTTCTAAAAATTTTAAGATTTATCTCAAATTCTTGTCCATAGTCATATTTTGAACCACACAAATGCTTCAACACATAAATGTGAATTGAAAGACCTTGTTTAAAACAACTATAAGAGGATATTAACGATCCTCAAGTCATTCATACAAAGCTCTAAATTAAAATAAAAAGCCACTAATTTAGTTTAAGGAACTTGACAAATTTTTTTTCCTATTCAAAAACTTGAACTATATAGTTAGTTTAAATTCATAAACATGGATCCAAAGCTTTTCGATAACTATAAAAGAACATAAAGGGTTCTCAAGTTATTCTCATAGGCCTAAATTGTCCAACTTAAAAAAAAGCTTCGAAAACATAAAGTAAACAAGTAACGAAATGGAATAGCCATTCGAAAACCTCCAAAGGATTCATCTAAGTTTTAAAAAAAGTTAACAACAAAACAAAGGGTTAGCATTCACAATGACCAAAATAATAACGAGAAGACAAACATAAATAATAAATTATAAAACTGAAATTTCGGGGGCTGAAATGTCGATTTGTTACTTCATCGATTTTGGTTTTTAACCCCCATTTCATGCTTCTTGCTTAGCTGCTGCCGGGATTACTATATAAATTGGACTTGAATCAACAATTTGTGTCCCTTTGGGGACCTGTAGTTGCTGCTTCAGGTTTGGCCTTTTAAGGCTACTGCTGCTGTTGCATTTTTTGGGTGTTTAAACCCAATTTATTGAGCTATTTGGAGCTGTTGTTGCTGCTGATTTTTGGGTGTTTAACCCAATAACATGACTCCCTTTCACGACTCCGAAGAAGGTTGACTCAAGAAGTGGAATAATGCAAGAGAAGTGGAGTCCATTGAACTCGAAGTGCTCATGCAGAGTAGAGAAAAGGAAGAAAAGATAAGAATTAGAATCAATCATAAATAATATTAATCTAAGCCAGTGAACATTCAAAACTAGATAACATATCTCAAATAAACAGTTTAAGACACAAAATGGAAAGGAACTTTAAATGAGCTCACATTAAAAATCAAAATGAGACCAACATCTATTTGAGAAGCAAAGAAACCTTGAGATAATTTGAATTACACGGGGCATTTAAAAAGAAAACAAATCGACTAGACCTAAAAGAGAATAATATCTAACATAAGAACAAACAAGAGGCTTCTTATCCATTTCCGATATAATTAAGAAAACTAAACTATAAAGAGCAAATCACCTGTATTTAAGAAACTATTAAGACGAGAAATAAAATACTAGAACCAAAGTTTTGAATCCAATTACCCAACTTACATATTTAAAGCTTTCAAACCAGTGAGTTGTTATTCATTACACATAACAAAACTAAGCATCTACAACAGGAATTAACGCAGAACAGAAACTATACAAAGCAAGTATAGATGGCATAGAACATGCTACTTAACAAAATAAAGAGGTTTATGATACTAACCCATATAAAACAACAAAGAAATCATACTATCAAATATTAAAACGACATGCATATCCTGAAGCATTTAATTCAAAATCTAACAGAAAGGAAAGCAACCAGCAACGTCTGGGGAAAAAACATGGTTATGTAATATTGCTAAGGTATGCACAACTATGGATCAAAGAAGCTAAGGTAGGAAATAAAGACATTTTTCATATCAATAGCAATCAAAACGTTTTGAAGACAATAAGAAAGCAACCCAACAACTAATTTTCACCTTAATATAACAAAACAGCAGTTGCACAACCTAGTATTTATAAAACAGATACGAGAAATCAGGCTTTGGCAAAAGGCGAGGTGATAATCTTTATGCAGAACACAACAACTTAAGGCAAAAAAAAAACCAACTATATCGCACAAATTTCCAACCGAATAGAGATAATAGTAAGTGGAAACACATGTATGGATTTATGAACTTGATGAAATAAAGAATCACATTGACATGGAAAATAACTTTCAGCAGAGCAAAACATTTGAACTCCTTCAAAATTTACTTAACTTTAAGAAGACTTCCACTGTCATTCACACCACTAATCATATTGAATCTAAACAAATAACAACTCTAGAATGCAACACTGACAAAGGGCAAGAAGATTACCTGGTTCTGCGCAGCGACGAGTCTTCCAAGACGACTCCACCTCTTCAACTCGAAAGCCACAAAACGCTTTAAAATTTTGAACTATGGGACCAAGAATTCCCAAAATTTTATGGGTACTCTTTGGTCTCCGAAAATCCTCTCCTAAAACAGTGAATGAAGAGGGTTTATATAGGGCCACTTCTGGGTTGGAATTGAGGGGGAAAACGATGTGGGAATGCCTCACAATTCAGAACTCTTAATGGATAAGGTCGAGGGAGCTGGAATTCGTACGAATTCTCAACGGATTCAGAACCAAGGCCATCCGATTATGAGTAAGGACGAGCGAGCGACAGGATTGAGACACCTGCTCTGTTCGGGTACGCCTGTACGAGACGATAAGGAGAGCACGCGGTGTTTGCTGATTTCGCGTCTGATGCGAGCTGGAGTTGCGTGATTTTTTGGTTTTTGTCGCGTTGCTTGTGAGTCGTTTTGCTGAACAAGGAGAAGGGGTTGGATTGTACTGGATATTTGTTGGGTTATTGAATTGTGGGCTGATGGGCTTCTGGTAATTGAAACAAATGGATTGGGAATATTGGGTTAGTCTAATTGTATTGGAATGAATTTGTTGATAGTATTGCATGAGAATTAGAGAGTTTGGGCCGGTTCGGATTTGGGCTGCTGGAAAAGGTCAAATAAAATGTGATAAATGTTCCCAAACTTAAAGTTGTCTACAATTTGACTAGGTTTCGGCCACATATATTTAAATTAATTAATTAGAAATTAAAATGTAGCCAAGCTGATCATAGGATAAGCTTGTCTAGTGATTAAATAAGACGAATTGATATAATTAACTTACGAGCTTCTTAATTTTAACAAAATAAAATAATTAGTTTGAACGTAAACTTATGATTCAAAAATTATAACCATAATTTAACTAAACTAATTTAACAAAATACCTACTAAAACAATGAAAATCTTCACGAGCTGATTTTCGGATAGTTATAAGATATACTAAGCATACATATCATTTAAAAATCGTATAGGGTGACTAAACCATTTAAAATAACTTGAGAAAATATTTGAATTTTACAAAGTCAATTATTTTGAATCTTTTGGAATTTAAGAAGCTCGAAAGTTAACTCCTATCGTGGAGGGGTCAAAATTGGGTGTCAACAGTTATAAATGAGGGAAAGATATAAATATATCGTCGAATGCGCCTCTTGATAACAATATTTCATTAAAACATCATTTTTTAATTTAAAAATCAATCTTATATTTTATATTATATATTTTCTATAACAATAATTTTCTTTAACAAATACAAAATATCGAAATAAAAGACCCTGTTATTGAGAAATTTGATTGTATTAAAAAGAAATTATTTAATTAATAAATAAAGAAGAAAATTAACAAAAAGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCATATTTTTTCCTCTTTTTATTTTCCATTTAATATTTTTTATATAAGAAAAACTTGTGTAAAATATTCTTAGATTATGGTTTATAATATGTCTACTTTATTAAGTTTATATAGATTGTAATAACAGTTATTTTCTTATATAAAGATATGATGCTACTAATAATAACTTGCGATTAACTAATAAAAATTTGTTGAAAATGGGTAATTAGTCTATCGGTGTATAAGTATTATTCATGCATGAAGGATTCGGGGAAGGACGTTAGGACAAAACTTTTAGAGGTGTAATGTAGATAATATATCAGAATACGAATATTAGTAATTGTAAGATTCAAACACATAACCTATAAATCACACAAAGATAATTTTATCATTACTTCGAGACTCCCGTATATTGTATTAGTTTGGACAGAACAAAACTCTTTCTGATGGTTATGTTTTAGTTAAAGCTTTAGAGTTTAAATAATTGTTAAAAAAATGATAAAATATACGCTGAATGATAATAATATTTTTAAAGCTATCAAGTGAAATTTACATAGATTAATAGTTAATTATGACCTCTATTCTCCATATATACAGATTATAATTTGCTATCCGATTAAAATTACTAATAAAATTAAATTATTTGTTCTTATTCTGCAGTCTGAAAGATTCTTTAAAAATATTATAAGACAAAATCACTTTGTAAATTTAAATTTATTTTTATTGTTATACTATACTTCTAATTTCAAAGACATGTCTCTTGTAAATGACAAAATTTTGACCTTTATACCATAAGGGGTCGTTTGGTTACAAGGATTATTAACGGTTATTTCAATATTAGAATTTGGGATTAAATTTGTTCACCATTTAGTTATGAGCCAATATATATTAGCTTAAACTAGATTAAAATTCATATAAAATCGAAGGATTATCTACCGTATTTTTTTTTCCAATAGGAAGGGAAAAACACTAGAGTTTTTCTTTTATCTGTTTAAATTTTGATGGATAAAATTATGTGATACTTGTTCTGGTAACTTGGTAAGAGGTAGCATACATATATATATATATCCACGAAATTAGTTATGAGTAAACTGATTCAGACGTCATGATTATATATGTATATAAAAGTGAGATTATTTATGTTGAGATATCGTAATTTTGAACCAAACGACCCCTAAATTATACTCCATGAAATATACTACTATATAAACACTTGAACATAGGATAAGATGATTCATCTATATAGCTATTTAAACTCTTGAACCATGGCAAACAAAAATTTAGTGTCCATTTTTGCAATTTTCTTGATTTTCCCCCTACTTTTCTTCATTGGAAACTCTTCTTCTTCTTCTAATAATAATGATGATAATTATATAAGTGATAAATTTGAAACTATAGACAATTACTTCACTCCAATATCAAAGGGCTTTTTTGCTGAGCTTCAACGTAGAAAAATGGAAGTTTGCTCATGTACACCTTGTTGTTACATATGCCCATGTCCTACTTCTTAAAAGTGGCTATTTAATAAACTCGGAGTTCTGCTTATATATGTTGATAGTATAAATAATTTTCATGTTACCAAGTCACTTGTATTTGTTTTAGCAAGTTATTGTAACATAATTTGTACTGTTTTCAAGATTATAAATCCGACCACTTTATTCATATACGGTGGTTTAGTGTGGAGATGTCTTTCGAGTGAACTGATTGCGTGAAAAATTATTTACACTATCGATGGATATTAGTTAAACTCGAAAATACCTTAATGCAATATCATGTACCCCTTGTTTTTGCTTTATTTTCGGATCAAATTATGTAATAACTTTACCTAGTACGAATAAAAGTTTCCTTTTGGCCAAAAGAAGAGGTCACTCTTATATATATTGGATTGACGTAACGTGCATTATTTTCAAGATTATATATTATGTATTTAATTTTTTACGTATGATGATTGTGTAAATATATCTTTTGGGAACGTGATAGCATTTACTTATCTTCACTATCGGTAGATGCTAATTAAATGTTAAAAAGTTTCCTTTGTCACCTTTTTCTTGGTTCACTTAAAAAAATATGAAAGAAAAAGAAAGAGGTCGTTGGGCGCCATAATATGTATTGTTTTCAAGATTATAGATCAATTTTCTATGAAAAGAGATTAATTACGTGATCTGATAATGTGAAAATTAATTTACCTTTAATTTTTTGTGTAAAACAATAAATTCGATGGTTTACAGATGAATTAATATTCTATAAACTATCAAGTTCCTAATGTTTGAATTGTATGATTAATTAATTAAGAGAGTATAAAGTTTAAACCCATTTCTGTAAGATCTTTTTGTCCCTTTAAAATAGATACTTCTAATTTACTACAAAAGAAAATATCAAATTTATCACCAGAGCTACTAAAATGGGGTTGGCCCAGTTCGACACAATCCGTTATTGAGGTAGAGTTATGATATGATTTTTCAAGCTCATTTAAAATTAGTGCTTATAAGTGTGACTCATATAAGCCTTTGACTCTTGAGGCTTGATCGTAACTGCGCTCGGATCGGCCTATGGGCGAAAATATTTATTTAAGGGTAACTTATAGAAATCTCACTAGTGTATGAGCAAATTAAGGATAATTTACAGAAATCTCACTAGTGTATGAGCAAATTACATAGATGCACACTATGTTGTATTAATAATACAAATCTTATCAAATTTTGATGCATTCAGATACATGGACTCAAAAATAGGTGTAATTTGTTCGAGATACACTCTATCCAAGTGAAATCGTATGTATCTAGAATACACATACAAATTATGCGCCCTTGCCTGCCCCCCCCCCCCCTCCCCCACACACACAAACATTTCGCTCGCTACTCTCTTATCTCACTCGCGTATGATATGCATCACACCAGATACATGAATCTCATGTATCTAGTATCCTAAATACATGCTAAGCACACTAGATCATTTGCTAGTGTTATTGAAACAATACAATTGTTTCCTATATTTAATTTGTAATATGTACACAAGTTTAAGTTTGAAAAGAAAAAAATGATAAAAAGACGGGCTAGCCCGCCATAAATTGCACGAGCCTTATAGGGTTGGATTGAATCGATTGAGCATTTTCAAGTTCTGCCAAATGGAGGACCGACTCGACCTAGCCCATCAAATTCCTTGACCGCGAGGCTTGGACTGGAGTGGCTGACCCTTTTTGACAACTTCATTTGTCACATTCTATTTTTTTTAACCTTCGATCATATTTCATTGAAAAAATATATAACTCGAAATTTGAGCTCCAAACACTTGCTTGATCGATATAATTAGGCTAGTTAATCATATAGTCAAATATAAACATACATTTAATATATAAATGGGGATGAGATGCTTATACGATAAATTAAATATCGATGATAGGCGATAGAGAAGGTTATAAAGGCGTAAATCTTGAAAACACTTTAGCATAAATCAAAGCGTCTCGTTCTAAGTGGAACCGAATCATAGACAATTACATGATTTTTTTCTACACAGTTTAGTCAAAACAATACAATTGGTCTCTAATTTGATATTTCAAATATATATATATATATATATACACACACACTTTTGTCGACACATTTGATAAAAGATAAGGTCTGCGTACAATATACTCTAACAAACTATTGAAATGATCAAATATTTAATATTAAAATTGGAGAATCAAATTTTGGAAGAAAGTTTGCATGAAAACGATAAACTAACAAATGTATCAAATATATTCGAAACAATAACAAGGAAAAGATATACACTATGTATAATATTTAATTTACATAAGTGATAGATGATAATTTTTTATGAATTAAATAAAACATGGAAGTTATTACCAAGATTGGTTCCTTATATATATAACACCTTTATTAAGGCATGTTATTTATCAATATTTGGTCATCTCTCAAATATACATCAAAGTCATCATGACCAAAATAATCCTACTTTATGCAGTTGCATTTCTCACGATATTTCCACTCTTTTGGAACCATGGAAATGCAACAACTCCTCGCAAACTAGGGACACGTCAAAACGCAGTTACAAGCTTGTCAAATACATATAAAATAACTTATCGTGGATCAGGAGGCCAATATTTTCCAGTTTCAAACCTATTGATTCACGAAAATGCAAAAACTCCTCGTATATTAGGATCACAACAAAACACAGTTACAAGCTTGCCATATACAGAAGAAACAACTTCTGATGAACCAGGACATCAATATTTTGCTATTTCAAGCTCGCCAAATGATCATGCAAATGTAGCAACTCCTCACATACTAGGGGCACGCCATAATGCAGTTACAGGGGAAGCAACTTCTAGTGGATCAGAACACCAGGATTCTCACATTCCAAGCTCATTAGCTCATACAAATATAATAATTCCTCGAGGCCCACTTATGAATCCAAATGAAGCAACTTTTCCCAAGCTTGGGAAACGCGATAATCCAATTATAATCACAAGCTTATCAAATACAAATGAAGCAGTTGATTCTGGTGAATCAAAAATTCGTTCTTACCCCATTTCAAGCTCACCTTCTCAAACGATTATTGCTCATATTTTCCATCGTTTTTCCCCATCACAAATGTGGCAACAGGTAAAATTAAAGGCAACTCCTCGCAAATTATGGGCAAGTCGCCATAATGGAATTACAAGCTTATCAAATACAAATAAAGCAATTACTTCGCGTGGATCAGCAATCCAATACCATCCTATTTCAAGATCGTCAGCTCACACACATGCAATAACTCCTCGCACACTAAGAGCACGTTATAACGCAGTTACAAGCGCTTCAACTACAAATGAAGAAACTATTCAAAAGTATGGTGAACGTCAAAATTCAATTATAATTACAAGCTTACCAAATACAAAAAAAGCAACTAATTTTGGTGAATCAGAGCTCAATTTTCCCCCAATTTCAAGCTTGCCAACTCAAATAAATAGAGTATTTCCTCGCGATCCAGATGAGATAGGACAAGTATCATCAATTATCCATTGATCATACAAATGAAACATCTAAGCTCGAATAAGACTAGGTAATTATGGTTGATTATCTTGTATGTGTACAATTATGCTAAGGTGCTATGATAAATGCACTTATACATGTTCTGTTAATAATATAATGCATATTGTGCTTTATTTATCTTTAGTTACAATACATATATTGGACCTCAAACTTGACTTTAAATTTTAACTTTGACCTCCAACTTTCATAATGCACAAATAGACACTTTCACTATCCAATTTTTAAATAAATAAACACATGAGTCCTACATGGCAAAATACATGTAGGACAAAAAATGACATGTAGGACATGTGTGTTTATTTGTTCAAGTTTATACAAGTTTAAAAGTGTGTTTGGTATGAAGGAAAATATTTTCTAGAAAATGTTTTTCAATTTTCTCATGTTTGGTTGGGACAAAATTCTTGAAAAATGTTTTCCAAATCAACTCATTTTCCTCAAAATTAAGGAAAATGAATTCCCTTCAAAAATTAAGGAAAATATTTTCCAAAACTCTTCTACAACTTCAAATTACATTTTTTTTGGCAAAAAAATTAATTTTAAAAATATTTTTAATTTCAAAATATATATTTTTCACCGGATCATTAACGTATCCCGTGCATTAGATTAATTTATCAGCGCTTATTTTATTGTAGCCGTTTTGAGGAATTTTTTTTATTATAAAATTTTAAAGAATATATTGTAATTTTATCTTAAAAATATGTGACTTATGTAATTTGCCCATTATTAAATAGGAAGTCCTATTTGTATAAAAATGACGCAAAGTATACAAAGATAATTCTTAATAGCTACTCAAATTGTAACTACATTATGCAATTAACCAAACTTTAACTAAGAAGCTTCATTATGTTTCTAACTCTCAGCTATTTATGAAAATTTCACATTATTAAAATAACTTTCCTTACTAGCCATACGTGGGCCAAAACTAAAATGTTAGGCTCCAAAATAATGTCGGCATAATACATAAATTTATCTTTTAATTTTGTCTTATTTTATATTTATACTCTTCAATTTTGGATATGCACAAGTAGACATTTAACTTGTACAAACTTGACATGTTAGGCCTCGAAATAATTGTTCACTTCTTTGTCTGCGGTCTATATACAAGTGTGCCACGTCTAAGAACTTTCAGAACACTTCTTCACCTCATTATTTTGTGTATTCCACTCAACTCTTATTTACTCTTCCTATTTCTAATCATCGGGAAGATTCATCCTAGATTATTCCAGCAAATAGAAATGAATGGATATCAGATTAAAACGGAATAAGTTGATCGATTTATTAATTGATATTGGGATAAATCGAACAAAATTATTGAGAAGAATTTTAGTTTCGTCCCATCCCATTATACCGAGATGGAATCGAAACAGATCGAAATGAAATAAACGGGATGACACATATAGTTTTATCAAAAAAATTTTGAATTACGAAAATATGAATATTTTTTTTATTTTTTTAAGTTTAAATTAATAGTTCTTAAATTTATAACGTAATTTTTTAGTTAAGTTATTTTAAAGATATTTTTAATAAAAATTTTACTTATTAAGTTTGCAAGTTAAGTCTAATTAAGTTTTCAAGATTTAAATCTTTGAAGTTTATAAGTTATTACTTATTATTTATTAATATGTTATAATTTAAAAGTAATATTTATAACTTGTAATTAAAATAAAATAAATTTGTAATTTTAAAAATAAAAATAAAAATAAGGATAAAACAATTAAACAAATTAAAAAATATCAATTTAATTTATTTAAATTTGTATTATAAATTACAATTTCAATTTATAACTACTAGTAGAGTGCATAGTTTACGCAACCACATACTAGGAAGGGTTCTGTTTCAACTAATTCTCGAATGTAATACTATGTTTACTAATAGGGGTAGTTGGGTTACTTGTGTAGTATTTATTATTTAATATAAAATAGAAATTATAATTTATAAATATATAATATAAATTAATTAATAAATATATAATATAAATTAATTAATAAATATTAATTAATTGGAACAAGACCGAAACCGAAATAAACCGGTACCAAACCTCGGTTTTGTATCGTTCTGTGTCCCGGTTCGAAATGTCCATTTCCGTCTCATAGACAACCGAACCGGGACAAACCGCAACGAACTGAAACGGTACCGGACCGGTACCAATACATCCCGTTTCGTTACCCAGCCTTACTCAACTCCAATGGTGCGAGCTTTTATTATATTTGTACTGATGCTACTCTTAACTTATATAGTCTCATCACGCTTCATCATTGAGACTCTTTCGAAATTCGATGGACAATTTCCATTTAAACTTGATACATGGTAAGTATATACATATTTTATCTTTTCATATATAATTAAACTAGTAAACTTAGCCGCGCTATGCGCGGTATTACAAAGTTTTTATTTTTCTTTAATTTTTAAATCAATAGATTAGTTAATAAATTTTATTATTTAGCTTTATAATTTCAACTCAATTCATGAATTAATTTTATCAAAAAATAAAAACTTGTACGGTCAAATACCTATACTTTTTTTGGTTGAATAGTACCTATTCTTTTATGTTAGTTATAATATATAATTAAGAATTTATGACTTCATTATTGTAACGACCTGTTTAGTCGTTTTGAACAGCAGATTTTATTTCTAGAAAAACAGGTTGAGGCGACGGACCCCCACGACGGACCGTCATGGGCACGACGGACCTTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTTGTAACGAAATGGAAGGACGGACCGTCACATGTGTGACGGACCGTCACATGTGTGACGGACCATCACAGAGTCTTCAGGGGAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGAAGTTTTGGACTATTCCTACTTTAATTAATAAGTTAGAGGGTTAAGGTTAATAAGTCCAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGGGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTGGAATAAGAAAATTTGAAAGCACAAGAGAGGGAGAAAACGAACGAACAAGGAGAGAAGAAGAACAAAGCTTTGGGAATTTGCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGTTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAGTTGATAGAAGAAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGAGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGAAACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACATAGTTGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCATCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATCTCTATTTTGAGTTGGCCAATGATATCTACTCAGTACCCGTGTTTGGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGTCGTCATCTTCGACTCAACAGTAATTCTAGCCAGTCTTCATTACTCCGGATATAAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAACTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTTATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGACCC-GATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTC-TTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTT-CTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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AGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356206" ref_strand="+" ref_description="SGN-E356206 [cTOS-20-F19]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattagggtcgttggtctcatcacacaagaacaagtctagtagagtcttaagggacggtanggggacgcttttacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="42189" stop="21565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41889" g_stop="41559" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41558" i_stop="22111" i_length="19448">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22110" g_stop="21865" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="580" r_length="248" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E356206" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41889" e_stop="41559"/>
          <exon e_start="22110" e_stop="21865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAATCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCGGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTTATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGATAAGTGTGGGTGCCAGTCGCGCCCGGATTTGGGTCGTGACAGTAATGTTCATGTGCAACATTTGGTTGCTAATTTAATAATCAACTTGTTAATAAAACAAAAATTTAGTTGACTAGGTGATAATACTATCATTAACTTTTCTAATTTAACTATAATCAAGTTGGTTGCTTATAAAAGAAAATATGGATTAAATAAATACAAGAAGGGATATCAATACAAACTATAAATTGTAGGTCTTAATTTCATCATAGTTGCACAATACACATTTGCTATGGATAAAAAAACTATACTTCTTTTTGTTACAATTTTGATAATATGTTTTGCAATTAGCACTGCTTCTTCTTCTTCTTCATATGATTATATCATGTCAAGAAAAATGTTGCCTCAACTTATGTGTGGTTGTTGCGTACAATGTGGGTGCGTAGATTGTGACATTTGTTGTTGAGGGAAAACGTTAACCATTGTTGATCTGTAACATGTTGTCTTTTTTTTTTTTTTAATAAACAACTAGCTAATACGTACATTTACTTGATGTAACTATCCTAATTATTGATATATGTCGTTATATATACTATTTTGTATTGAACGATGTTATATTGAAATTTCTGTCGTTTATTTATATCGTCTGTCTGTTTATTTGGTTATTTTTTTTTTTTAAATAACATGAGTTAACCACCCATCTATAGTAATTTGTTTTGTTTTAAACTCTTCTACTTATTTGCTTTAAGCTCTCAATTATGTTAAGTCATCCCAAGATGACTCCTAATGAAATGATAAATGGAGTACATTTTATCTATCTTGTAATGTTCTTGAGATATAAAAGTTAAAAGAAAAGAATATTAATGGTAAAGATTTACCATATAAGGAAAAAGTAAATTGTATTTCTTAAATCAAAATTACTTTTTTTCGCGAAATATTTAATTATACATAAAATTTAAGAAAGAAAAATAAAGAAAAAAATCATCAATTAATTAAGACTATGAAGAATATATACTATAATCAAATGCTCCCTCCGTCACAAAATGTTTTTTTTCTTATTCAGAATACAAAAATTAAACTAATTTAAATGTTTAATGTGAACTAAATATAATATTTTTATTATTTAAAAAATAATTTACATAATTAAAAAATTATATAAAAAATATTATAAATCACACATAACTAATAAATTCAAAATTCAAGAGATTATATAATAAAATAATAATAATTCTTTGGCTGTCCCAATTATAACTAATAGTATAATCTTTTGGACATCAATGCCCTTGATGATATCATTCCTGATATCAGCAATATATACAAATTCAAAGCTAGCATGTGAATTCATTTATTACTTACATATATTATTCAAACAAAGAGGCTTTGGATCAAAGTCTTACCACAATGACCAAGTTGATTATAGCTCTAGCCCTCCATTTATCCATAAGCATCATTTGAATATCTAAATCTCCCCCCCCCCCCCCCCCCCAATAAATTTATGTGGTTATATTTAATTGATTGATATAAAAGATAAGTTTCTGTTGGTTTTAATTGAAATATGTGATTTTAAATTATTATGATCATAAATTTATGATATTTAAGAATAAAATAGGTGTTTAATGTTGACTTGTATTCGGCTTTAGAAATGAGTCATCATTTTTTTCGAAACTGAGTAAATAATTAAGGAAAATAATCACATAAATGAAATAAAAAAGGAAGTCTAGGTGCAATGACAAATTAAAATTGTTATCGTGTGACTAGTAGTTCTTCACTAGTTCAAATTGCAGAAACAACCTCTCACGAAAAACACAGTAAAACTCCCATATCTGACGATGAAAGTTATTGTCGTGCAATTAGAAAATTGCGAATTCAAAGTGCAGAAATACCCTTCTCAAAAATAAAAAGTAGAACTGCATCAAAAGATATGATCTGATCATTTTAAAAATTCTATCATACTATAAATTTAATACATTGAACTATCCTAGCTTTTTATTTTCACATGATTTCCTCTATATAAAGGAGGACCAATGAGTTAATATTTCACTTCATAACTATAAAATATTCAAATATAGCACATAGTCTCTACTCTCTTCTAGTGCCAATGGCAAGAACCACAATAGCAATTTTTGCCCTTTTCATTGTTTTATCATCACTTTGCTTCAACCCAATTAATAGCTCAAGGGATATTTCTTTTGATAATCCATTAACACAGAGAAACCTCTTATCCCAAAAGACAAGTGATATTCATCCTGATGTTGCTGCCAATTGTAGAATTTGTATGGAACAATGTGGATCTTGTACTTGTTGCATTGCAAAATTGAAGCATTAATTAATATTACTTATGTTGTAAAACTATATTGTTGTTTGTATTGTTTCTAGTACGACTTTTTTTATTATTGTATTTGAATTTAATATGTTTTATGTGAGCGGAGAGTCTATCAGAAATAACTTCTCTATCTTCACAAGATAGAAGTAAGATTAAATACACAAAATCTCTCAGACTTCAATTATTTGTAAGATTACAATAAACATGTTTGTAATATTTCGTGTTAACTGTTGCCAAATATTCATGGCTTCATATATTTTCCTTTTACTTCTACTTATCTATGTTATGTCTCTCTCATAATTTCATTTTTTAGATCGGATCGATGTTATGAAATTCATTTTTGATAAGAAAGTCATTTTCTAGTGTTTGACACTGAAAAATCATGTCTTTCCTTGCTTAACAGGAGGATTTTTTTTTATAAGTATCTCCTATTAATGTATTTTCTATTACTTTCTCAAAATAACACTTCAACATTATTATTAATTATTATTACTGAAACATTTAATCATAATATATATTCTTCGATGTGCTGCTATTATGATCATTATTATTATTAAGGGAAACTTTCACATATGGTCACTTAAAAATAATTAATTACTTTCTATAGCTTTAGTTTGATAATTACATTTGTAGCTACAAGTTATTTGGAGGAGAGAGGCGAGCGAGATTGGGAGAGAGAGGAGAAAGGCGAGAGAGAGGGGAAAAAGAGTGGGAGAAAGGTGAATTGTATATGTATATTGGTTTGATTATTGTATATTTTACATATGTAATTGTATATATGGCAAGAGAGATTGGGAGAGGGAGGATAGAGGCGAGCGATACTGGGAGAGACAAGAGAGCGGCGAGCGAGATCGAGAGATGCGAGCAAGAGAGGGCATAGAGTGGGAGAGATGTGAATTATATTTGTATATAATTGTATATAACTGTATATTATACATATACATTTGTATAAATGGAAAACGAGATTGGGAGAGAGAGGAGAGAGGCGAGCGAGATCGAGAGAGGGAGAGAGAGGCGAGCGAGAGAGGACAGAGAGGTGAATTATATATGTATATAGGCTAAAACATTGTGTGTGTGTGTATATATATATATTTATTTATTTATTTGTATATCCTGACGAATTATACATATACAAACATGACTAAATATACAAACTCGAAGTCAAATCAATGTATGATGTTAGTCACGAGTGATAATTATAACAAATTATAGGTATGATGAGTAATTAAATAGTTTAAGTTTGCTTATCCGCATAATTTTCCCTTTTTATCATCATCATTGTTATTTATTTATTTATTTTTCACCTTGAATAATTGCCTCATGATTTATCAAGTCAAGTAAAATTAAAAAGGGGTAATTGAATATTTCTTATTTATTTTTCTAATGCCACCTAAAAGATTCTCTTGAAAATTCCACAACTTTATTTTCCTTCTCAAATTTTTTTTACTAAAGTAAGTATTTATATTGCTTCATTGCCGACTTCAAAATAATCACAAGAATCTTGAAAAAAAAAAGACCAAAAAATTATCAACGATGCCTATAAATAAACAACTTGCATGAAGGAAATTAATATCAATAACTTTTAGAATTTATATCAACCATGACAAAAATACTTCAATTTATCACAATATTCTTAATGACCCTTTTCTTACTTTGTAACTCTTCGTCTAATTATGATAATTCAATCGTTACTGGTGATGATGGTGAATTAACATCGTCTAAAATTATCGAAAATTATGATGATAATATTACTAATGAATTGCGAAGACGAAGAATGGAGCGTTGCCCTTGCTATCCTTGTTGTGCTTTTCCATGTCCATGTTCTTCTTAAAAGAGGAATTTTTCATGATCTTTGTTGTTGTGTTATTGATAATCCTTTGTTTTTAGAATAAGATTTTGGAGTTTTATGAATAAGAAAGTAAATTGATCATGTCATTGATTTGGTGGATTTATGTGAAAAACATATATGGTGTAATTAATTAAACATTCTTGAAAATAATAAATCATTTATTTTTTCAATGCATAGTATGTGTTAGGGGTGTACATGGTCGGATTGGTTTTAGTTTTTCAAATATCAAATCAAACTATTTGTATCGGATTTTTAAAATTATAAACCAAACCAATAAAACTCGGATTTTTCAACCTCAAATTTTATGGATTTTTTCGTGTTTTCAGGTTTTCTGGTTTTTTCGGATTTTTTCCTTTGAAGTATTCATACAAACATAAAATTTACTTGTACTTAAAATATTTCTTCAGTCTTCCAAAATACAACTATCGAAGGTGTTGCTTAAGAATATAACACAAACAATGATATGGTTAATGACACTAAAATATCCAATATATATATATATATATATATATATATATATATATATATAATGATAATAAAATCGCGTAAAACAAATATTGCCAATTAACAAGTCATAATGAAATGATCATAATTTAAAAGTATTATTTTATGCTAAAATAATTTTAATAAATATTAGTTACATGACTAAATATTAAAGAAAATTAAAATTAGATTATATATTTTAATTGTCGAAACCAATGTAAAAACAAAGAACAAACATTCAATATTATTGTCATTCTTAGGGTTAAATTGATTTCCTTTTTGCATTACTATTAATTTGATTTTGATTGAAGTTTTATTATAATTATCAACATTTGTGGACTATAATCTTTACGGATCCATTCAAAATTTTAAGTTTCAAACTTGAAATAATATATTAAAAGATTAAAACTATGAAAAATATAAGAAATATTTAAAATCGATATCAAATGAAATATTTTTATGTATAAAATAAAATTTTAAATTATATATATAATGTTGGATTGGTTTGGTCTCGGGTTGATTTTTTTAGTTAAAACCAAACCAATCCAAATATACTCGAGTTCTTTTTTAAACACCAAATGAAGTCAAACCAATCACTAGTTGGATTTTTTTTCTCGATTTACGATTTGATTCGATTTTTGATTTGATTCGACTTTTGATTCGATTTTGTACACCCCTAGTATGTGTTTTATATTTGAGATTGCATGTTCATTTCCTTCCTTCTCTATTGTGTTTTATATTTGAGATTGCATCTTCATTTTCTATCTTCTCAGCAGAATTTAATTTTTATACACTGATAATTATAAAAAGAATGGTGGGTCAAAAATACTCTTGAACCATTCGAATAACTCAAATATATCCTTGAACTATATTTCGGCTCAAAAATACCCTTCCCCTCAAACTATAGGGTCAAAAATACCCTTCCCTTAGAACTTATGTATTTTGTGAAATCGTTCTAAGGAAATGGAGAAATGAGGAAAAGGGGTTCTATGTTTCAAGTAAAATGGTTTCTAAATTCTACGAAAAATGGAGAAATTACGGATAAGTTTATTAGTCTATGTGGCATGAGTGGAATTCTATTGGCTCATGTGGCATGCCATGTGACATCCACATGTCATCTAAGTCACGTTTGATCGATTCGGTTAATAAGAAGGGTATTTTTGACCCAATAGTTTGCCGATAAGGATATATTTAAGCCGAAATATACTTCAAAGGTATATATGAGCTATTTCAGATAATTTAAGGATATTTTTGACCCTTTTCAATTATTAAAAAATATTCTATATATTTGATTATTTATGTCATCAAAAAAATTATTACATATCGATATCCATAATAAGTGAAGCAAGTTACATTGGAAAAATAAGACAATTAATTGATTTACAACAACAATTCAAAGTAAAGTGGTAGCTTCAACTTCTTTTAAATTGACGGTGCATGTTATTGTTACGACCCGATTTCAAAAACTAAAGGGTTTCGAAGCCAATTTCGCAACTTTGGCCAATTTTGCAAAATTTTAATTTTAGGAAGTTGCCACTTAATCTTTTAGGAAAAATTAAGAAAACCAAATAGATAAAAAAGGGAAGTTTAAAAGAAAACATAAAATCAGAGTTTTGGGTAAGGGTTCAAATAATTCTCTAAGGAAGGGCTTAGGCACCTTAGAGAATCCTCTAACACGCGGTTGACCAACGGATTTAAAAATTTGGCTAATTTTATATATAAAAAAAAAATTTAATTAAAAAAAATCTTGGTTGATACTCATATAAAAGTATTTTGATACTTCTAAAAATTTTAAGATTTATCTCAAATTCTTGTCCATAGTCATATTTTGAACCACACAAATGCTTCAACACATAAATGTGAATTGAAAGACCTTGTTTAAAACAACTATAAGAGGATATTAACGATCCTCAAGTCATTCATACAAAGCTCTAAATTAAAATAAAAAGCCACTAATTTAGTTTAAGGAACTTGACAAATTTTTTTTCCTATTCAAAAACTTGAACTATATAGTTAGTTTAAATTCATAAACATGGATCCAAAGCTTTTCGATAACTATAAAAGAACATAAAGGGTTCTCAAGTTATTCTCATAGGCCTAAATTGTCCAACTTAAAAAAAAGCTTCGAAAACATAAAGTAAACAAGTAACGAAATGGAATAGCCATTCGAAAACCTCCAAAGGATTCATCTAAGTTTTAAAAAAAGTTAACAACAAAACAAAGGGTTAGCATTCACAATGACCAAAATAATAACGAGAAGACAAACATAAATAATAAATTATAAAACTGAAATTTCGGGGGCTGAAATGTCGATTTGTTACTTCATCGATTTTGGTTTTTAACCCCCATTTCATGCTTCTTGCTTAGCTGCTGCCGGGATTACTATATAAATTGGACTTGAATCAACAATTTGTGTCCCTTTGGGGACCTGTAGTTGCTGCTTCAGGTTTGGCCTTTTAAGGCTACTGCTGCTGTTGCATTTTTTGGGTGTTTAAACCCAATTTATTGAGCTATTTGGAGCTGTTGTTGCTGCTGATTTTTGGGTGTTTAACCCAATAACATGACTCCCTTTCACGACTCCGAAGAAGGTTGACTCAAGAAGTGGAATAATGCAAGAGAAGTGGAGTCCATTGAACTCGAAGTGCTCATGCAGAGTAGAGAAAAGGAAGAAAAGATAAGAATTAGAATCAATCATAAATAATATTAATCTAAGCCAGTGAACATTCAAAACTAGATAACATATCTCAAATAAACAGTTTAAGACACAAAATGGAAAGGAACTTTAAATGAGCTCACATTAAAAATCAAAATGAGACCAACATCTATTTGAGAAGCAAAGAAACCTTGAGATAATTTGAATTACACGGGGCATTTAAAAAGAAAACAAATCGACTAGACCTAAAAGAGAATAATATCTAACATAAGAACAAACAAGAGGCTTCTTATCCATTTCCGATATAATTAAGAAAACTAAACTATAAAGAGCAAATCACCTGTATTTAAGAAACTATTAAGACGAGAAATAAAATACTAGAACCAAAGTTTTGAATCCAATTACCCAACTTACATATTTAAAGCTTTCAAACCAGTGAGTTGTTATTCATTACACATAACAAAACTAAGCATCTACAACAGGAATTAACGCAGAACAGAAACTATACAAAGCAAGTATAGATGGCATAGAACATGCTACTTAACAAAATAAAGAGGTTTATGATACTAACCCATATAAAACAACAAAGAAATCATACTATCAAATATTAAAACGACATGCATATCCTGAAGCATTTAATTCAAAATCTAACAGAAAGGAAAGCAACCAGCAACGTCTGGGGAAAAAACATGGTTATGTAATATTGCTAAGGTATGCACAACTATGGATCAAAGAAGCTAAGGTAGGAAATAAAGACATTTTTCATATCAATAGCAATCAAAACGTTTTGAAGACAATAAGAAAGCAACCCAACAACTAATTTTCACCTTAATATAACAAAACAGCAGTTGCACAACCTAGTATTTATAAAACAGATACGAGAAATCAGGCTTTGGCAAAAGGCGAGGTGATAATCTTTATGCAGAACACAACAACTTAAGGCAAAAAAAAAACCAACTATATCGCACAAATTTCCAACCGAATAGAGATAATAGTAAGTGGAAACACATGTATGGATTTATGAACTTGATGAAATAAAGAATCACATTGACATGGAAAATAACTTTCAGCAGAGCAAAACATTTGAACTCCTTCAAAATTTACTTAACTTTAAGAAGACTTCCACTGTCATTCACACCACTAATCATATTGAATCTAAACAAATAACAACTCTAGAATGCAACACTGACAAAGGGCAAGAAGATTACCTGGTTCTGCGCAGCGACGAGTCTTCCAAGACGACTCCACCTCTTCAACTCGAAAGCCACAAAACGCTTTAAAATTTTGAACTATGGGACCAAGAATTCCCAAAATTTTATGGGTACTCTTTGGTCTCCGAAAATCCTCTCCTAAAACAGTGAATGAAGAGGGTTTATATAGGGCCACTTCTGGGTTGGAATTGAGGGGGAAAACGATGTGGGAATGCCTCACAATTCAGAACTCTTAATGGATAAGGTCGAGGGAGCTGGAATTCGTACGAATTCTCAACGGATTCAGAACCAAGGCCATCCGATTATGAGTAAGGACGAGCGAGCGACAGGATTGAGACACCTGCTCTGTTCGGGTACGCCTGTACGAGACGATAAGGAGAGCACGCGGTGTTTGCTGATTTCGCGTCTGATGCGAGCTGGAGTTGCGTGATTTTTTGGTTTTTGTCGCGTTGCTTGTGAGTCGTTTTGCTGAACAAGGAGAAGGGGTTGGATTGTACTGGATATTTGTTGGGTTATTGAATTGTGGGCTGATGGGCTTCTGGTAATTGAAACAAATGGATTGGGAATATTGGGTTAGTCTAATTGTATTGGAATGAATTTGTTGATAGTATTGCATGAGAATTAGAGAGTTTGGGCCGGTTCGGATTTGGGCTGCTGGAAAAGGTCAAATAAAATGTGATAAATGTTCCCAAACTTAAAGTTGTCTACAATTTGACTAGGTTTCGGCCACATATATTTAAATTAATTAATTAGAAATTAAAATGTAGCCAAGCTGATCATAGGATAAGCTTGTCTAGTGATTAAATAAGACGAATTGATATAATTAACTTACGAGCTTCTTAATTTTAACAAAATAAAATAATTAGTTTGAACGTAAACTTATGATTCAAAAATTATAACCATAATTTAACTAAACTAATTTAACAAAATACCTACTAAAACAATGAAAATCTTCACGAGCTGATTTTCGGATAGTTATAAGATATACTAAGCATACATATCATTTAAAAATCGTATAGGGTGACTAAACCATTTAAAATAACTTGAGAAAATATTTGAATTTTACAAAGTCAATTATTTTGAATCTTTTGGAATTTAAGAAGCTCGAAAGTTAACTCCTATCGTGGAGGGGTCAAAATTGGGTGTCAACAGTTATAAATGAGGGAAAGATATAAATATATCGTCGAATGCGCCTCTTGATAACAATATTTCATTAAAACATCATTTTTTAATTTAAAAATCAATCTTATATTTTATATTATATATTTTCTATAACAATAATTTTCTTTAACAAATACAAAATATCGAAATAAAAGACCCTGTTATTGAGAAATTTGATTGTATTAAAAAGAAATTATTTAATTAATAAATAAAGAAGAAAATTAACAAAAAGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCATATTTTTTCCTCTTTTTATTTTCCATTTAATATTTTTTATATAAGAAAAACTTGTGTAAAATATTCTTAGATTATGGTTTATAATATGTCTACTTTATTAAGTTTATATAGATTGTAATAACAGTTATTTTCTTATATAAAGATATGATGCTACTAATAATAACTTGCGATTAACTAATAAAAATTTGTTGAAAATGGGTAATTAGTCTATCGGTGTATAAGTATTATTCATGCATGAAGGATTCGGGGAAGGACGTTAGGACAAAACTTTTAGAGGTGTAATGTAGATAATATATCAGAATACGAATATTAGTAATTGTAAGATTCAAACACATAACCTATAAATCACACAAAGATAATTTTATCATTACTTCGAGACTCCCGTATATTGTATTAGTTTGGACAGAACAAAACTCTTTCTGATGGTTATGTTTTAGTTAAAGCTTTAGAGTTTAAATAATTGTTAAAAAAATGATAAAATATACGCTGAATGATAATAATATTTTTAAAGCTATCAAGTGAAATTTACATAGATTAATAGTTAATTATGACCTCTATTCTCCATATATACAGATTATAATTTGCTATCCGATTAAAATTACTAATAAAATTAAATTATTTGTTCTTATTCTGCAGTCTGAAAGATTCTTTAAAAATATTATAAGACAAAATCACTTTGTAAATTTAAATTTATTTTTATTGTTATACTATACTTCTAATTTCAAAGACATGTCTCTTGTAAATGACAAAATTTTGACCTTTATACCATAAGGGGTCGTTTGGTTACAAGGATTATTAACGGTTATTTCAATATTAGAATTTGGGATTAAATTTGTTCACCATTTAGTTATGAGCCAATATATATTAGCTTAAACTAGATTAAAATTCATATAAAATCGAAGGATTATCTACCGTATTTTTTTTTCCAATAGGAAGGGAAAAACACTAGAGTTTTTCTTTTATCTGTTTAAATTTTGATGGATAAAATTATGTGATACTTGTTCTGGTAACTTGGTAAGAGGTAGCATACATATATATATATATCCACGAAATTAGTTATGAGTAAACTGATTCAGACGTCATGATTATATATGTATATAAAAGTGAGATTATTTATGTTGAGATATCGTAATTTTGAACCAAACGACCCCTAAATTATACTCCATGAAATATACTACTATATAAACACTTGAACATAGGATAAGATGATTCATCTATATAGCTATTTAAACTCTTGAACCATGGCAAACAAAAATTTAGTGTCCATTTTTGCAATTTTCTTGATTTTCCCCCTACTTTTCTTCATTGGAAACTCTTCTTCTTCTTCTAATAATAATGATGATAATTATATAAGTGATAAATTTGAAACTATAGACAATTACTTCACTCCAATATCAAAGGGCTTTTTTGCTGAGCTTCAACGTAGAAAAATGGAAGTTTGCTCATGTACACCTTGTTGTTACATATGCCCATGTCCTACTTCTTAAAAGTGGCTATTTAATAAACTCGGAGTTCTGCTTATATATGTTGATAGTATAAATAATTTTCATGTTACCAAGTCACTTGTATTTGTTTTAGCAAGTTATTGTAACATAATTTGTACTGTTTTCAAGATTATAAATCCGACCACTTTATTCATATACGGTGGTTTAGTGTGGAGATGTCTTTCGAGTGAACTGATTGCGTGAAAAATTATTTACACTATCGATGGATATTAGTTAAACTCGAAAATACCTTAATGCAATATCATGTACCCCTTGTTTTTGCTTTATTTTCGGATCAAATTATGTAATAACTTTACCTAGTACGAATAAAAGTTTCCTTTTGGCCAAAAGAAGAGGTCACTCTTATATATATTGGATTGACGTAACGTGCATTATTTTCAAGATTATATATTATGTATTTAATTTTTTACGTATGATGATTGTGTAAATATATCTTTTGGGAACGTGATAGCATTTACTTATCTTCACTATCGGTAGATGCTAATTAAATGTTAAAAAGTTTCCTTTGTCACCTTTTTCTTGGTTCACTTAAAAAAATATGAAAGAAAAAGAAAGAGGTCGTTGGGCGCCATAATATGTATTGTTTTCAAGATTATAGATCAATTTTCTATGAAAAGAGATTAATTACGTGATCTGATAATGTGAAAATTAATTTACCTTTAATTTTTTGTGTAAAACAATAAATTCGATGGTTTACAGATGAATTAATATTCTATAAACTATCAAGTTCCTAATGTTTGAATTGTATGATTAATTAATTAAGAGAGTATAAAGTTTAAACCCATTTCTGTAAGATCTTTTTGTCCCTTTAAAATAGATACTTCTAATTTACTACAAAAGAAAATATCAAATTTATCACCAGAGCTACTAAAATGGGGTTGGCCCAGTTCGACACAATCCGTTATTGAGGTAGAGTTATGATATGATTTTTCAAGCTCATTTAAAATTAGTGCTTATAAGTGTGACTCATATAAGCCTTTGACTCTTGAGGCTTGATCGTAACTGCGCTCGGATCGGCCTATGGGCGAAAATATTTATTTAAGGGTAACTTATAGAAATCTCACTAGTGTATGAGCAAATTAAGGATAATTTACAGAAATCTCACTAGTGTATGAGCAAATTACATAGATGCACACTATGTTGTATTAATAATACAAATCTTATCAAATTTTGATGCATTCAGATACATGGACTCAAAAATAGGTGTAATTTGTTCGAGATACACTCTATCCAAGTGAAATCGTATGTATCTAGAATACACATACAAATTATGCGCCCTTGCCTGCCCCCCCCCCCCCTCCCCCACACACACAAACATTTCGCTCGCTACTCTCTTATCTCACTCGCGTATGATATGCATCACACCAGATACATGAATCTCATGTATCTAGTATCCTAAATACATGCTAAGCACACTAGATCATTTGCTAGTGTTATTGAAACAATACAATTGTTTCCTATATTTAATTTGTAATATGTACACAAGTTTAAGTTTGAAAAGAAAAAAATGATAAAAAGACGGGCTAGCCCGCCATAAATTGCACGAGCCTTATAGGGTTGGATTGAATCGATTGAGCATTTTCAAGTTCTGCCAAATGGAGGACCGACTCGACCTAGCCCATCAAATTCCTTGACCGCGAGGCTTGGACTGGAGTGGCTGACCCTTTTTGACAACTTCATTTGTCACATTCTATTTTTTTTAACCTTCGATCATATTTCATTGAAAAAATATATAACTCGAAATTTGAGCTCCAAACACTTGCTTGATCGATATAATTAGGCTAGTTAATCATATAGTCAAATATAAACATACATTTAATATATAAATGGGGATGAGATGCTTATACGATAAATTAAATATCGATGATAGGCGATAGAGAAGGTTATAAAGGCGTAAATCTTGAAAACACTTTAGCATAAATCAAAGCGTCTCGTTCTAAGTGGAACCGAATCATAGACAATTACATGATTTTTTTCTACACAGTTTAGTCAAAACAATACAATTGGTCTCTAATTTGATATTTCAAATATATATATATATATATATACACACACACTTTTGTCGACACATTTGATAAAAGATAAGGTCTGCGTACAATATACTCTAACAAACTATTGAAATGATCAAATATTTAATATTAAAATTGGAGAATCAAATTTTGGAAGAAAGTTTGCATGAAAACGATAAACTAACAAATGTATCAAATATATTCGAAACAATAACAAGGAAAAGATATACACTATGTATAATATTTAATTTACATAAGTGATAGATGATAATTTTTTATGAATTAAATAAAACATGGAAGTTATTACCAAGATTGGTTCCTTATATATATAACACCTTTATTAAGGCATGTTATTTATCAATATTTGGTCATCTCTCAAATATACATCAAAGTCATCATGACCAAAATAATCCTACTTTATGCAGTTGCATTTCTCACGATATTTCCACTCTTTTGGAACCATGGAAATGCAACAACTCCTCGCAAACTAGGGACACGTCAAAACGCAGTTACAAGCTTGTCAAATACATATAAAATAACTTATCGTGGATCAGGAGGCCAATATTTTCCAGTTTCAAACCTATTGATTCACGAAAATGCAAAAACTCCTCGTATATTAGGATCACAACAAAACACAGTTACAAGCTTGCCATATACAGAAGAAACAACTTCTGATGAACCAGGACATCAATATTTTGCTATTTCAAGCTCGCCAAATGATCATGCAAATGTAGCAACTCCTCACATACTAGGGGCACGCCATAATGCAGTTACAGGGGAAGCAACTTCTAGTGGATCAGAACACCAGGATTCTCACATTCCAAGCTCATTAGCTCATACAAATATAATAATTCCTCGAGGCCCACTTATGAATCCAAATGAAGCAACTTTTCCCAAGCTTGGGAAACGCGATAATCCAATTATAATCACAAGCTTATCAAATACAAATGAAGCAGTTGATTCTGGTGAATCAAAAATTCGTTCTTACCCCATTTCAAGCTCACCTTCTCAAACGATTATTGCTCATATTTTCCATCGTTTTTCCCCATCACAAATGTGGCAACAGGTAAAATTAAAGGCAACTCCTCGCAAATTATGGGCAAGTCGCCATAATGGAATTACAAGCTTATCAAATACAAATAAAGCAATTACTTCGCGTGGATCAGCAATCCAATACCATCCTATTTCAAGATCGTCAGCTCACACACATGCAATAACTCCTCGCACACTAAGAGCACGTTATAACGCAGTTACAAGCGCTTCAACTACAAATGAAGAAACTATTCAAAAGTATGGTGAACGTCAAAATTCAATTATAATTACAAGCTTACCAAATACAAAAAAAGCAACTAATTTTGGTGAATCAGAGCTCAATTTTCCCCCAATTTCAAGCTTGCCAACTCAAATAAATAGAGTATTTCCTCGCGATCCAGATGAGATAGGACAAGTATCATCAATTATCCATTGATCATACAAATGAAACATCTAAGCTCGAATAAGACTAGGTAATTATGGTTGATTATCTTGTATGTGTACAATTATGCTAAGGTGCTATGATAAATGCACTTATACATGTTCTGTTAATAATATAATGCATATTGTGCTTTATTTATCTTTAGTTACAATACATATATTGGACCTCAAACTTGACTTTAAATTTTAACTTTGACCTCCAACTTTCATAATGCACAAATAGACACTTTCACTATCCAATTTTTAAATAAATAAACACATGAGTCCTACATGGCAAAATACATGTAGGACAAAAAATGACATGTAGGACATGTGTGTTTATTTGTTCAAGTTTATACAAGTTTAAAAGTGTGTTTGGTATGAAGGAAAATATTTTCTAGAAAATGTTTTTCAATTTTCTCATGTTTGGTTGGGACAAAATTCTTGAAAAATGTTTTCCAAATCAACTCATTTTCCTCAAAATTAAGGAAAATGAATTCCCTTCAAAAATTAAGGAAAATATTTTCCAAAACTCTTCTACAACTTCAAATTACATTTTTTTTGGCAAAAAAATTAATTTTAAAAATATTTTTAATTTCAAAATATATATTTTTCACCGGATCATTAACGTATCCCGTGCATTAGATTAATTTATCAGCGCTTATTTTATTGTAGCCGTTTTGAGGAATTTTTTTTATTATAAAATTTTAAAGAATATATTGTAATTTTATCTTAAAAATATGTGACTTATGTAATTTGCCCATTATTAAATAGGAAGTCCTATTTGTATAAAAATGACGCAAAGTATACAAAGATAATTCTTAATAGCTACTCAAATTGTAACTACATTATGCAATTAACCAAACTTTAACTAAGAAGCTTCATTATGTTTCTAACTCTCAGCTATTTATGAAAATTTCACATTATTAAAATAACTTTCCTTACTAGCCATACGTGGGCCAAAACTAAAATGTTAGGCTCCAAAATAATGTCGGCATAATACATAAATTTATCTTTTAATTTTGTCTTATTTTATATTTATACTCTTCAATTTTGGATATGCACAAGTAGACATTTAACTTGTACAAACTTGACATGTTAGGCCTCGAAATAATTGTTCACTTCTTTGTCTGCGGTCTATATACAAGTGTGCCACGTCTAAGAACTTTCAGAACACTTCTTCACCTCATTATTTTGTGTATTCCACTCAACTCTTATTTACTCTTCCTATTTCTAATCATCGGGAAGATTCATCCTAGATTATTCCAGCAAATAGAAATGAATGGATATCAGATTAAAACGGAATAAGTTGATCGATTTATTAATTGATATTGGGATAAATCGAACAAAATTATTGAGAAGAATTTTAGTTTCGTCCCATCCCATTATACCGAGATGGAATCGAAACAGATCGAAATGAAATAAACGGGATGACACATATAGTTTTATCAAAAAAATTTTGAATTACGAAAATATGAATATTTTTTTTATTTTTTTAAGTTTAAATTAATAGTTCTTAAATTTATAACGTAATTTTTTAGTTAAGTTATTTTAAAGATATTTTTAATAAAAATTTTACTTATTAAGTTTGCAAGTTAAGTCTAATTAAGTTTTCAAGATTTAAATCTTTGAAGTTTATAAGTTATTACTTATTATTTATTAATATGTTATAATTTAAAAGTAATATTTATAACTTGTAATTAAAATAAAATAAATTTGTAATTTTAAAAATAAAAATAAAAATAAGGATAAAACAATTAAACAAATTAAAAAATATCAATTTAATTTATTTAAATTTGTATTATAAATTACAATTTCAATTTATAACTACTAGTAGAGTGCATAGTTTACGCAACCACATACTAGGAAGGGTTCTGTTTCAACTAATTCTCGAATGTAATACTATGTTTACTAATAGGGGTAGTTGGGTTACTTGTGTAGTATTTATTATTTAATATAAAATAGAAATTATAATTTATAAATATATAATATAAATTAATTAATAAATATATAATATAAATTAATTAATAAATATTAATTAATTGGAACAAGACCGAAACCGAAATAAACCGGTACCAAACCTCGGTTTTGTATCGTTCTGTGTCCCGGTTCGAAATGTCCATTTCCGTCTCATAGACAACCGAACCGGGACAAACCGCAACGAACTGAAACGGTACCGGACCGGTACCAATACATCCCGTTTCGTTACCCAGCCTTACTCAACTCCAATGGTGCGAGCTTTTATTATATTTGTACTGATGCTACTCTTAACTTATATAGTCTCATCACGCTTCATCATTGAGACTCTTTCGAAATTCGATGGACAATTTCCATTTAAACTTGATACATGGTAAGTATATACATATTTTATCTTTTCATATATAATTAAACTAGTAAACTTAGCCGCGCTATGCGCGGTATTACAAAGTTTTTATTTTTCTTTAATTTTTAAATCAATAGATTAGTTAATAAATTTTATTATTTAGCTTTATAATTTCAACTCAATTCATGAATTAATTTTATCAAAAAATAAAAACTTGTACGGTCAAATACCTATACTTTTTTTGGTTGAATAGTACCTATTCTTTTATGTTAGTTATAATATATAATTAAGAATTTATGACTTCATTATTGTAACGACCTGTTTAGTCGTTTTGAACAGCAGATTTTATTTCTAGAAAAACAGGTTGAGGCGACGGACCCCCACGACGGACCGTCATGGGCACGACGGACCTTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTTGTAACGAAATGGAAGGACGGACCGTCACATGTGTGACGGACCGTCACATGTGTGACGGACCATCACAGAGTCTTCAGGGGAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGAAGTTTTGGACTATTCCTACTTTAATTAATAAGTTAGAGGGTTAAGGTTAATAAGTCCAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGGGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTGGAATAAGAAAATTTGAAAGCACAAGAGAGGGAGAAAACGAACGAACAAGGAGAGAAGAAGAACAAAGCTTTGGGAATTTGCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGTTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAGTTGATAGAAGAAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGAGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGAAACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACATAGTTGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCATCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATCTCTATTTTGAGTTGGCCAATGATATCTACTCAGTACCCGTGTTTGGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGTCGTCATCTTCGACTCAACAGTAATTCTAGCCAGTCTTCATTACTCCGGATATAAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAACTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTTATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGACCC-GATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTC</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTT-CTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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AGTAGAGTCTTAAGGGACGGTANGGGGACGCTTTTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="22102" stop="23216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22402" g_stop="22714" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22402" e_stop="22714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATTGGCCAACTCAAAATAGAGATCAATATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGATGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTACCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGCACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTACAACT</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATAT--CAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="23023" stop="22195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22730" g_stop="22493" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22730" e_stop="22493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTTCCGACACATAGTTGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCATCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339555" ref_strand="+" ref_description="SGN-E339555 [cTOE-16-I20]">
      <seq>ccgaacagagcaggtgtctcaatcctgtcgctcgctcgtccttactcataatcggatggccttggttctgaatccgttgagaattcgtacgaattccagctccctcgaccttatccattaagagttctgaattgtgaggcattcccacatcgttttccccctcaattccaacccagaagtggccctatataaaccctcttcattcactgttttaggagaggattttcggagaccaaagagtacccataaaattttgggaattcttggtcccatagttcaaaattttaaagcgttttgtggctttcgagttgaagaggtggagtcgtcttggaagactcgtcgctgcgcagaaccaggtaatcttcttgccctttgtcagtgttgcattctagagttgttatttgtttagattcaatatgattagtggtgtgaatgacagtggaagtcttcttaaagttaagtaaattttgaaggagttcaaatgttttgctctgctgaaagttattttccatgtcaatgtgattctttatttcatcaagttcataaatccatacatgtgtttccacttactattatctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="32292" stop="33472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32592" g_stop="33172" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E339555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32592" e_stop="33172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAACAGAGCAGGTGTCTCAATCCTGTCGCTCGCTCGTCCTTACTCATAATCGGATGGCCTTGGTTCTGAATCCGTTGAGAATTCGTACGAATTCCAGCTCCCTCGACCTTATCCATTAAGAGTTCTGAATTGTGAGGCATTCCCACATCGTTTTCCCCCTCAATTCCAACCCAGAAGTGGCCCTATATAAACCCTCTTCATTCACTGTTTTAGGAGAGGATTTTCGGAGACCAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTA</genome_strand>
        <mrna_strand>CCGAACAGAGCAGGTGTCTCAATCCTGTCGCTCGCTCGTCCTTACTCATAATCGGATGGCCTTGGTTCTGAATCCGTTGAGAATTCGTACGAATTCCAGCTCCCTCGACCTTATCCATTAAGAGTTCTGAATTGTGAGGCATTCCCACATCGTTTTCCCCCTCAATTCCAACCCAGAAGTGGCCCTATATAAACCCTCTTCATTCACTGTTTTAGGAGAGGATTTTCGGAGACCAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314647" ref_strand="+" ref_description="SGN-E314647 [cTOA-20-B6]">
      <seq>ggagaccaaagagtacccataaaattttgggaattcttggtcccatagttcaaaattttaaagcgttttgtggctttcgagttgaagaggtggagtcgtcttggaagactcgtcgctgcgcagaaccaggtaatcttcttgccctttgtcagtgttgcattctagagttgttatttgtttagattcaatatgattagtggtgtgaatgacagtggaagtcttcttaaagttaagtaaattttgaaggagttcaaatgttttgctctgctgaaagttattttccatgtcaatgtgattctttatttcatcaagttcataaatccatacatgtgtttccacttactattatctctattcggttggaaatttgtgcgatatagttggttttttttttgccttaagttgttgtgttctgcataaagattatcacctcgccttttgccaaagcctgatttctcgtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="32519" stop="33582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32819" g_stop="33282" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E314647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32819" e_stop="33282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACCAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCT</genome_strand>
        <mrna_strand>GGAGACCAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316973" ref_strand="+" ref_description="SGN-E316973 [cTOA-27-J10]">
      <seq>caaagagtacccataaaattttgggaattcttggtcccatagttcaaaattttaaagcgttttgtggctttcgagttgaagaggtggagtcgtcttggaagactcgtcgctgcgcagaaccaggtaatcttcttgccctttgtcagtgttgcattctagagttgttatttgtttagattcaatatgattagtggtgtgaatgacagtggaagtcttcttaaagttaagtaaattttgaaggagttcaaatgttttgctctgctgaaagttattttccatgtcaatgtgattctttatttcatcaagttcataaatccatacatgtgtttccacttactattatctctattcggttggaaatttgtgcgatatagttggttttttttttgccttaagttgttgtgttctgcataaagattatcacctcgccttttgcaaagcctgatttctcgtatctgtttataaatactaggttgtgcaactgctgttttgttatattaaggtgaaaattagttgttgggttgctttcttattgtcttcaaaacgttttgattgctattgatatgaaaaatgtctttatttcctaccttagcttcttttgatcatagttgtgcataccttagcaatattacataaccatgttttttccccagacgttgctggttgctttcctttctgttagattttgaattaaatgcttcaggatatgcatgtcgttttaatatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="32525" stop="33854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32825" g_stop="33554" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E316973" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32825" e_stop="33554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTGTTTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTC-TTTGATCCATAGTTGTGCATACCTTAGCAATATTACATAACCATGTTTTTTCCCCAGACGTTGCTGGTTGCTTTCCTTTCTGTTAGATTTTGAATTAAATGCTTCAGGATATGCATGTCGTTTTAATATTTG</genome_strand>
        <mrna_strand>CAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTG-CAAAGCCTGATTTCTCGTATCTG-TTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTCTTTTGAT-CATAGTTGTGCATACCTTAGCAATATTACATAACCATGTTTTTTCCCCAGACGTTGCTGGTTGCTTTCCTTTCTGTTAGATTTTGAATTAAATGCTTCAGGATATGCATGTCGTTTTAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317065" ref_strand="+" ref_description="SGN-E317065 [cTOA-27-K12]">
      <seq>caaagagtacccataaaattttgggaattcttggtcccatagttcaaaattttaaagcgttttgtggctttcgagttgaagaggtggagtcgtcttggaagactcgtcgctgcgcagaaccaggtaatcttcttgccctttgtcagtgttgcattctagagttgttatttgtttagattcaatatgattagtggtgtgaatgacagtggaagtcttcttaaagttaagtaaattttgaaggagttcaaatgttttgctctgctgaaagttattttccatgtcaatgtgattctttatttcatcaagttcataaatccatacatgtgtttccacttactattatctctattcggttggaaatttgtgcgatatagttggttttttttttgccttaagttgttgtgttctgcataaagattatcacctcgccttttgccaaagcctgatttctcgtatctgtttataaatactaggttgtgcaactgctgttttgttatattaaggtgaaaattagttgttgggttgctttcttattgtcttcaaaacgttttgattgctattgatatgaaaaatgtctttatttcctaccttagcttctttgatccatagttgtgcataccttagcaatattacataaccatgttttttccccagacgttgctggttgctttcctttctgttagattttgaattaaatgcttcaggatatgcatgtcgttttaatatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="32525" stop="33854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32825" g_stop="33554" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E317065" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32825" e_stop="33554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTGTTTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTCTTTGATCCATAGTTGTGCATACCTTAGCAATATTACATAACCATGTTTTTTCCCCAGACGTTGCTGGTTGCTTTCCTTTCTGTTAGATTTTGAATTAAATGCTTCAGGATATGCATGTCGTTTTAATATTTG</genome_strand>
        <mrna_strand>CAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTG-TTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTCTTTGATCCATAGTTGTGCATACCTTAGCAATATTACATAACCATGTTTTTTCCCCAGACGTTGCTGGTTGCTTTCCTTTCTGTTAGATTTTGAATTAAATGCTTCAGGATATGCATGTCGTTTTAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320506" ref_strand="+" ref_description="SGN-E320506 [cTOB-22-G5]">
      <seq>caaagagtacccataaaattttgggaattcttggtcccatagttcaaaattttaaagcgttttgtggctttcgagttgaagaggtggagtcgtcttggaagactcgtcgctgcgcagaaccaggtaatcttcttgccctttgtcagtgttgcattctagagttgttatttgtttagattcaatatgattagtggtgtgaatgacagtggaagtcttcttaaagttaagtaaattttgaaggagttcaaatgttttgctctgctgaaagttattttccatgtcaatgtgattctttatttcatcaagttcataaatccatacatgtgtttccacttactattatctctattcggttggaaatttgtgcgatatagttggttttttttttgccttaagttgttgtgttctgcataaagattatcacctcgccttttgccaaagcctgatttctcgtatctgttttataaatactaggttgtgcaactgctgttttgttatattaaggtgaaaattagttgttgggttgctttcttattgtcttcaaaacgttttgattgctattgatatgaaaaatgtctttatttcctaccttagcttctttgantcatagttgtgcataccttagcaatattacataaccatgttttttccccagacgttgctggttgctttcctttctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="32525" stop="33806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32825" g_stop="33506" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E320506" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32825" e_stop="33506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTGTTTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTCTTTGATCCATAGTTGTGCATACCTTAGCAATATTACATAACCATGTTTTTTCCCCAGACGTTGCTGGTTGCTTTCCTTTCTGTT</genome_strand>
        <mrna_strand>CAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTGTTTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTCTTTGANTCATAGTTGTGCATACCTTAGCAATATTACATAACCATGTTTTTTCCCCAGACGTTGCTGGTTGCTTTCCTTTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317097" ref_strand="+" ref_description="SGN-E317097 [cTOA-27-J11]">
      <seq>caaagagtacccataaaattttgggaattcttggtcccatagttcaaaattttaaagcgttttgtggctttcgagttgaagaggtggagtcgtcttggaagactcgtcgctgcgcagaaccaggtaatcttcttgccctttgtcagtgttgcattctagagttgttatttgtttagattcaatatgattagtggtgtgaatgacagtggaagtcttcttaaagttaagtaaattttgaaggagttcaaatgttttgctctgctgaaagttattttccatgtcaatgtgattctttatttcatcaagttcataaatccatacatgtgtttccacttactattatctctattcggttggaaatttgtgcgatatagttggttttttttttgccttaagttgttgtgttctgcataaagattatcacctcgccttttgccaaagcctgatttctcgtatctgtttataaatactaggttgtgcaactgctgttttgttatattaaggtgaaaattagttgttgggttgctttcttattgtcttcaaaacgttttgattgctattgatatgaaaaatgtctttatttcctaccttagcttctttgatccatagttgtgcataccttagcaatattacataaccatgttttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="32525" stop="33776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32825" g_stop="33476" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E317097" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32825" e_stop="33476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTGTTTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTCTTTGATCCATAGTTGTGCATACCTTAGCAATATTACATAACCATGTTTTTTCCC</genome_strand>
        <mrna_strand>CAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTG-TTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTCTTTGATCCATAGTTGTGCATACCTTAGCAATATTACATAACCATGTTTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314313" ref_strand="+" ref_description="SGN-E314313 [cTOA-21-K22]">
      <seq>agagtacccataaaattttgggaattcttggtcccatagttcaaaattttaaagcgttttgtggctttcgagttgaagaggtggagtcgtcttggaagactcgtcgctgcgcagaaccaggtaatcttcttgccctttgtcagtgttgcattctagagttgttatttgtttagattcaatatgattagtggtgtgaatgacagtggaagtcttcttaaagttaagtaaattttgaaggagttcaaatgttttgctctgctgaaagttattttccatgtcaatgtgattctttatttcatcaagttcataaatccatacatgtgtttccacttactattatctctattcggttggaaatttgtgcgatatagttggttttttttttgccttaagttgttgtgttctgcataaagattatcacctcgccttttgccaaagcctgatttctcgtatctgttttataaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="32528" stop="33596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32828" g_stop="33296" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E314313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32828" e_stop="33296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTGTTTTATAAATACT</genome_strand>
        <mrna_strand>AGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTGTTTTATAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310368" ref_strand="+" ref_description="SGN-E310368 [cTOA-1-M18]">
      <seq>taaaattttgggaattcttggtcccatagttcaaaattttaaagcgttttgtggctttcgagttgaagaggtggagtcgtcttggaagactcgtcgctgcgcagaaccaggtaatcttcttgccctttgtcagtgttgcattctagagttgttatttgtttagattcaatatgattagtggtgtgaatgacagtggaagtcttcttaaagttaagtaaattttgaaggagttcaaatgttttgctctgctgaaagttattttccatgtcaatgtgattctttatttcatcaagttcataaatccatacatgtgtttccacttactattatctctattcggatggaaatttgtgcgatatagctggtttttttttttgccttaagttgttgtgttctgcataaagattatcacctcgccttttgccaaagcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="32538" stop="33570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32838" g_stop="33270" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E310368" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32838" e_stop="33270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGG-TTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGA</genome_strand>
        <mrna_strand>TAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGATGGAAATTTGTGCGATATAGCTGGTTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315469" ref_strand="+" ref_description="SGN-E315469 [cTOA-22-N15]">
      <seq>aaaattttgggaattcttggtcccatagttcaaaattttaaagcgttttgtggctttcgagttgaagaggtggagtcgtcttggaagactcgtcgctgcgcagaaccaggtaatcttcttgccctttgtcagtgttgcattctagagttgttatttgtttagattcaatatgattagtggtgtgaatgacagtggaagtcttcttaaagttaagtaaattttgaaggagttcaaatgttttgctctgctgaaagttattttccatgtcaatgtgattctttatttcatcaagttcataaatccatacatgtgtttccacttactattatctctattcggttggaaatttgtgcgatatagttggtttttttttgccttaagttgttgtgttctgcataaagattatcacctcgccttttgccaaagcctgatttctcgtatctgttttataaatactaggttgtgcaactgctgttttgttatattaaggtgaaaattagttgttgggttgctttcttattgtcttcaaaacgttttgattgctattgatatgaaaaatgtctttatttcctaccttagcttctttgatccatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="32539" stop="33736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32839" g_stop="33436" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E315469" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32839" e_stop="33436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTGTTTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTCTTTGATCCATAGTT</genome_strand>
        <mrna_strand>AAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGG-TTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTGTTTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTCTTTGATCCATAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315596" ref_strand="+" ref_description="SGN-E315596 [cTOA-22-O6]">
      <seq>aaaattttgggaattcttggtcccatagttcaaaattttaaagcgttttgtggctttcgagttgaagaggtggagtcgtcttggaagactcgtcgctgcgcagaaccaggtaatcttcttgccctttgtcagtgttgcattctagagttgttatttgtttagattcaatatgattagtggtgtgaatgacagtggaagtcttcttaaagttaagtaaattttgaaggagttcaaatgttttgctctgctgaaagttattttccatgtcaatgtgattctttatttcatcaagttcataaatccatacatgtgtttccacttactattatctctattcgggtggaaatttgtgcgatataggtggtttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="32539" stop="33510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32839" g_stop="33210" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E315596" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32839" e_stop="33210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTT</genome_strand>
        <mrna_strand>AAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGGTGGAAATTTGTGCGATATAGGTGGTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262409" ref_strand="+" ref_description="SGN-E262409 [cLEG-56-E18]">
      <seq>attttgggaattcttggtcccatagttcaaaattttaaagcgttttgtggctttcgagttgaagaggtggagtcgtcttggaagactcgtcgctgcgcagaaccaggtaatcttcttgccctttgtcagtgttgcattctagagttgttatttgtttagattcaatatgattagtggtgtgaatgacagtggaagtcttcttaaagttaagtaaattttgaaggagttcaaatgttttgctctgctgaaagttattttccatgtcaatgtgattctttatttcatcaagttcataaatccatacatgtgtttccacttactattatctctattcggttggaaatttgtgcgatatagttggttttttttttgccttaagttgttgtgttctgcataaagattatcacctcgccttttgccaaagcctgatttctcgtatctgttttataaatactaggttgtgcaactgctgttttgttatattaaggtgaaaattagttgttgggttgctttcttattgtcttcaaaacgttttgattgctattgatatgaaaaatgtctttatttcctaccttagcttctttgatccatagttgtgcataccttagcaatattacataaccatgttttttccccagacgttgctggttgctttcctttctgttaaattttgaattaaatgcttcaggatatgcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="32542" stop="33840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32842" g_stop="33540" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E262409" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32842" e_stop="33540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTGTTTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTCTTTGATCCATAGTTGTGCATACCTTAGCAATATTACATAACCATGTTTTTTCCCCAGACGTTGCTGGTTGCTTTCCTTTCTGTTAGATTTTGAATTAAATGCTTCAGGATATGCATGT</genome_strand>
        <mrna_strand>ATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTGTTTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTCTTTGATCCATAGTTGTGCATACCTTAGCAATATTACATAACCATGTTTTTTCCCCAGACGTTGCTGGTTGCTTTCCTTTCTGTTAAATTTTGAATTAAATGCTTCAGGATATGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333718" ref_strand="+" ref_description="SGN-E333718 [cTOD-22-M23]">
      <seq>ttttttttttcgaaaacctccaaaggattcatctaagttttaaaaaaagttaacaacaaaacaaagaaatcatactatcaaatattaaaacgacatgcatatcctgaagcatttaattcaaaatctaacagaaaggaaagcaaccagcaacgtctggggaaaaaacatggttatgtaatattgctaaggtatgcacaactatggatcaaagaagctaaggtaggaaataaagacatttttcatatcaatagcaatcaaaacgttttgaagacaataagaaagcaacccaacaactaattttcaccttaatataacaaaacagcagttgcacaacctagtatttataaaacagatacgagaaatcaggctttggcaaaaggcgaggtgataatctttatgcagaacacaacaacttaaggcaaaaaaaaaaccaactatatcgcacaaatttccaaccgaatagagataatagtaagtggaaacacatgtatggatttatgaacttgatgaaataaagaatcacattgacatggaaaataactttcagcagagcaaaacatttgaactccttcaaaatttacttaactttaagaagacttccactgtcattcacaccactaatcatattgaatctaaacaaataacaactctagaaatgcacactgacaaagggcaagaagattacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="34943" stop="32645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34651" g_stop="34586" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34585" i_stop="33567" i_length="1019">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33566" g_stop="32945" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="688" r_length="622" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E333718" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34651" e_stop="34586"/>
          <exon e_start="33566" e_stop="32945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGCCATTCGAAAACCTCCAAAGGATTCATCTAAGTTTTAAAAAAAGTTAACAACAAAACAAAGGGTTAGCATTCACAATGACCAAAATAATAACGAGAAGACAAACATAAATAATAAATTATAAAACTGAAATTTCGGGGGCTGAAATGTCGATTTGTTACTTCATCGATTTTGGTTTTTAACCCCCATTTCATGCTTCTTGCTTAGCTGCTGCCGGGATTACTATATAAATTGGACTTGAATCAACAATTTGTGTCCCTTTGGGGACCTGTAGTTGCTGCTTCAGGTTTGGCCTTTTAAGGCTACTGCTGCTGTTGCATTTTTTGGGTGTTTAAACCCAATTTATTGAGCTATTTGGAGCTGTTGTTGCTGCTGATTTTTGGGTGTTTAACCCAATAACATGACTCCCTTTCACGACTCCGAAGAAGGTTGACTCAAGAAGTGGAATAATGCAAGAGAAGTGGAGTCCATTGAACTCGAAGTGCTCATGCAGAGTAGAGAAAAGGAAGAAAAGATAAGAATTAGAATCAATCATAAATAATATTAATCTAAGCCAGTGAACATTCAAAACTAGATAACATATCTCAAATAAACAGTTTAAGACACAAAATGGAAAGGAACTTTAAATGAGCTCACATTAAAAATCAAAATGAGACCAACATCTATTTGAGAAGCAAAGAAACCTTGAGATAATTTGAATTACACGGGGCATTTAAAAAGAAAACAAATCGACTAGACCTAAAAGAGAATAATATCTAACATAAGAACAAACAAGAGGCTTCTTATCCATTTCCGATATAATTAAGAAAACTAAACTATAAAGAGCAAATCACCTGTATTTAAGAAACTATTAAGACGAGAAATAAAATACTAGAACCAAAGTTTTGAATCCAATTACCCAACTTACATATTTAAAGCTTTCAAACCAGTGAGTTGTTATTCATTACACATAACAAAACTAAGCATCTACAACAGGAATTAACGCAGAACAGAAACTATACAAAGCAAGTATAGATGGCATAGAACATGCTACTTAACAAAATAAAGAGGTTTATGATACTAACCCATATAAAACAACAAAGAAATCATACTATCAAATATTAAAACGACATGCATATCCTGAAGCATTTAATTCAAAATCTAACAGAAAGGAAAGCAACCAGCAACGTCTGGGGAAAAAACATGGTTATGTAATATTGCTAAGGTATGCACAACTATGGATCAAAGAAGCTAAGGTAGGAAATAAAGACATTTTTCATATCAATAGCAATCAAAACGTTTTGAAGACAATAAGAAAGCAACCCAACAACTAATTTTCACCTTAATATAACAAAACAGCAGTTGCACAACCTAGTATTTATAAAACAGATACGAGAAATCAGGCTTTGGCAAAAGGCGAGGTGATAATCTTTATGCAGAACACAACAACTTAAGGCAAAAAAAAAACCAACTATATCGCACAAATTTCCAACCGAATAGAGATAATAGTAAGTGGAAACACATGTATGGATTTATGAACTTGATGAAATAAAGAATCACATTGACATGGAAAATAACTTTCAGCAGAGCAAAACATTTGAACTCCTTCAAAATTTACTTAACTTTAAGAAGACTTCCACTGTCATTCACACCACTAATCATATTGAATCTAAACAAATAACAACTCTAGAATGCAACACTGACAAAGGGCAAGAAGATTACCTG</genome_strand>
        <mrna_strand>TTTTTTTTTTCGAAAACCTCCAAAGGATTCATCTAAGTTTTAAAAAAAGTTAACAACAAAACAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCATACTATCAAATATTAAAACGACATGCATATCCTGAAGCATTTAATTCAAAATCTAACAGAAAGGAAAGCAACCAGCAACGTCTGGGGAAAAAACATGGTTATGTAATATTGCTAAGGTATGCACAACTATGGATCAAAGAAGCTAAGGTAGGAAATAAAGACATTTTTCATATCAATAGCAATCAAAACGTTTTGAAGACAATAAGAAAGCAACCCAACAACTAATTTTCACCTTAATATAACAAAACAGCAGTTGCACAACCTAGTATTTATAAAACAGATACGAGAAATCAGGCTTTGGCAAAAGGCGAGGTGATAATCTTTATGCAGAACACAACAACTTAAGGCAAAAAAAAAACCAACTATATCGCACAAATTTCCAACCGAATAGAGATAATAGTAAGTGGAAACACATGTATGGATTTATGAACTTGATGAAATAAAGAATCACATTGACATGGAAAATAACTTTCAGCAGAGCAAAACATTTGAACTCCTTCAAAATTTACTTAACTTTAAGAAGACTTCCACTGTCATTCACACCACTAATCATATTGAATCTAAACAAATAACAACTCTAGAAATGCACACTGACAAAGGGCAAGAAGATTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333574" ref_strand="+" ref_description="SGN-E333574 [cTOD-22-G8]">
      <seq>ttttttttttcgaaaacctccaaaggattcatctaagttttaaaaaaagttaacaacaaaacaaagaaatcatactatcaaatattaaaacgacatgcatatcctgaagcatttaattcaaaatctaacagaaaggaaagcaaccagcaacgtctggggaaaaaacatggttatgtaatattgctaaggtatgcacaactatggatcaaagaagctaaggtaggaaataaagacatttttcatatcaatagcaatcaaaacgttttgaagacaataagaaagcaacccaacaactaattttcaccttaatataacaaaacagcagttgcacaacctagtatttataaaacagatacgagaaatcaggctttggcaaaaggcgaggtgataatctttatgcagaacacaacaacttaaggcaaaaaaaaaaccaactatatcgcacaaatttccaaccgaatagagataatagtaagtggaaacacatgtatggatttatgaacttgatgaaataaagaatcacattgacatggaaaataactttcagcagagcaaaacatttgaactccttcaaaatttacttaactttaagaagacttccactgtcattcacaccactaatcatattgaatctaaacaaataacaactctagaatggcacactgacaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="34943" stop="32660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34651" g_stop="34586" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34585" i_stop="33567" i_length="1019">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33566" g_stop="32960" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="673" r_length="607" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E333574" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34651" e_stop="34586"/>
          <exon e_start="33566" e_stop="32960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGCCATTCGAAAACCTCCAAAGGATTCATCTAAGTTTTAAAAAAAGTTAACAACAAAACAAAGGGTTAGCATTCACAATGACCAAAATAATAACGAGAAGACAAACATAAATAATAAATTATAAAACTGAAATTTCGGGGGCTGAAATGTCGATTTGTTACTTCATCGATTTTGGTTTTTAACCCCCATTTCATGCTTCTTGCTTAGCTGCTGCCGGGATTACTATATAAATTGGACTTGAATCAACAATTTGTGTCCCTTTGGGGACCTGTAGTTGCTGCTTCAGGTTTGGCCTTTTAAGGCTACTGCTGCTGTTGCATTTTTTGGGTGTTTAAACCCAATTTATTGAGCTATTTGGAGCTGTTGTTGCTGCTGATTTTTGGGTGTTTAACCCAATAACATGACTCCCTTTCACGACTCCGAAGAAGGTTGACTCAAGAAGTGGAATAATGCAAGAGAAGTGGAGTCCATTGAACTCGAAGTGCTCATGCAGAGTAGAGAAAAGGAAGAAAAGATAAGAATTAGAATCAATCATAAATAATATTAATCTAAGCCAGTGAACATTCAAAACTAGATAACATATCTCAAATAAACAGTTTAAGACACAAAATGGAAAGGAACTTTAAATGAGCTCACATTAAAAATCAAAATGAGACCAACATCTATTTGAGAAGCAAAGAAACCTTGAGATAATTTGAATTACACGGGGCATTTAAAAAGAAAACAAATCGACTAGACCTAAAAGAGAATAATATCTAACATAAGAACAAACAAGAGGCTTCTTATCCATTTCCGATATAATTAAGAAAACTAAACTATAAAGAGCAAATCACCTGTATTTAAGAAACTATTAAGACGAGAAATAAAATACTAGAACCAAAGTTTTGAATCCAATTACCCAACTTACATATTTAAAGCTTTCAAACCAGTGAGTTGTTATTCATTACACATAACAAAACTAAGCATCTACAACAGGAATTAACGCAGAACAGAAACTATACAAAGCAAGTATAGATGGCATAGAACATGCTACTTAACAAAATAAAGAGGTTTATGATACTAACCCATATAAAACAACAAAGAAATCATACTATCAAATATTAAAACGACATGCATATCCTGAAGCATTTAATTCAAAATCTAACAGAAAGGAAAGCAACCAGCAACGTCTGGGGAAAAAACATGGTTATGTAATATTGCTAAGGTATGCACAACTATGGATCAAAGAAGCTAAGGTAGGAAATAAAGACATTTTTCATATCAATAGCAATCAAAACGTTTTGAAGACAATAAGAAAGCAACCCAACAACTAATTTTCACCTTAATATAACAAAACAGCAGTTGCACAACCTAGTATTTATAAAACAGATACGAGAAATCAGGCTTTGGCAAAAGGCGAGGTGATAATCTTTATGCAGAACACAACAACTTAAGGCAAAAAAAAAACCAACTATATCGCACAAATTTCCAACCGAATAGAGATAATAGTAAGTGGAAACACATGTATGGATTTATGAACTTGATGAAATAAAGAATCACATTGACATGGAAAATAACTTTCAGCAGAGCAAAACATTTGAACTCCTTCAAAATTTACTTAACTTTAAGAAGACTTCCACTGTCATTCACACCACTAATCATATTGAATCTAAACAAATAACAACTCTAGAATGCAACACTGACAAAGGG</genome_strand>
        <mrna_strand>TTTTTTTTTTCGAAAACCTCCAAAGGATTCATCTAAGTTTTAAAAAAAGTTAACAACAAAACAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCATACTATCAAATATTAAAACGACATGCATATCCTGAAGCATTTAATTCAAAATCTAACAGAAAGGAAAGCAACCAGCAACGTCTGGGGAAAAAACATGGTTATGTAATATTGCTAAGGTATGCACAACTATGGATCAAAGAAGCTAAGGTAGGAAATAAAGACATTTTTCATATCAATAGCAATCAAAACGTTTTGAAGACAATAAGAAAGCAACCCAACAACTAATTTTCACCTTAATATAACAAAACAGCAGTTGCACAACCTAGTATTTATAAAACAGATACGAGAAATCAGGCTTTGGCAAAAGGCGAGGTGATAATCTTTATGCAGAACACAACAACTTAAGGCAAAAAAAAAACCAACTATATCGCACAAATTTCCAACCGAATAGAGATAATAGTAAGTGGAAACACATGTATGGATTTATGAACTTGATGAAATAAAGAATCACATTGACATGGAAAATAACTTTCAGCAGAGCAAAACATTTGAACTCCTTCAAAATTTACTTAACTTTAAGAAGACTTCCACTGTCATTCACACCACTAATCATATTGAATCTAAACAAATAACAACTCTAGAATGGCACACTGACAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244881" ref_strand="+" ref_description="SGN-E244881 [cLEF-2-P1]">
      <seq>ttagcaatattacataaccatgttttttccccagacgttgctggttgctttcctttctgttagattttgaattaaatgcttcaggatatgcatgtcgttttaatatttgatagtatgatttctttgttgttttatatgggttagtatcataaacctctttattttgttaagtagcatgttctatgccatctatacttgctttgtatagtttctgttctgcgttaattcctgttgtagatgcttagttttgttatgtgtaatgaataacaactcactggtttgaaagctttaaatatgtaagttgggtaattggattcaaaactttggttctagtattttatttctcgtcttaatagtttcttaaatacaggtgatttgctctttatagtttaggtttcttaattatatcggaaatggataagaagcctcttgtttgttcttatgttagatattattctcttttaggtctagtcgatttgttttctttttaaatgccccgtgtaattcaaattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="33146" stop="34260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33446" g_stop="33960" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E244881" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33446" e_stop="33960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCAATATTACATAACCATGTTTTTTCCCCAGACGTTGCTGGTTGCTTTCCTTTCTGTTAGATTTTGAATTAAATGCTTCAGGATATGCATGTCGTTTTAATATTTGATAGTATGATTTCTTTGTTGTTTTATATGGGTTAGTATCATAAACCTCTTTATTTTGTTAAGTAGCATGTTCTATGCCATCTATACTTGCTTTGTATAGTTTCTGTTCTGCGTTAATTCCTGTTGTAGATGCTTAGTTTTGTTATGTGTAATGAATAACAACTCACTGGTTTGAAAGCTTTAAATATGTAAGTTGGGTAATTGGATTCAAAACTTTGGTTCTAGTATTTTATTTCTCGTCTTAATAGTTTCTTAAATACAGGTGATTTGCTCTTTATAGTTTAGTTTTCTTAATTATATCGGAAATGGATAAGAAGCCTCTTGTTTGTTCTTATGTTAGATATTATTCTCTTTTAGGTCTAGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATC</genome_strand>
        <mrna_strand>TTAGCAATATTACATAACCATGTTTTTTCCCCAGACGTTGCTGGTTGCTTTCCTTTCTGTTAGATTTTGAATTAAATGCTTCAGGATATGCATGTCGTTTTAATATTTGATAGTATGATTTCTTTGTTGTTTTATATGGGTTAGTATCATAAACCTCTTTATTTTGTTAAGTAGCATGTTCTATGCCATCTATACTTGCTTTGTATAGTTTCTGTTCTGCGTTAATTCCTGTTGTAGATGCTTAGTTTTGTTATGTGTAATGAATAACAACTCACTGGTTTGAAAGCTTTAAATATGTAAGTTGGGTAATTGGATTCAAAACTTTGGTTCTAGTATTTTATTTCTCGTCTTAATAGTTTCTTAAATACAGGTGATTTGCTCTTTATAGTTTAGGTTTCTTAATTATATCGGAAATGGATAAGAAGCCTCTTGTTTGTTCTTATGTTAGATATTATTCTCTTTTAGGTCTAGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269456" ref_strand="+" ref_description="SGN-E269456 [cLEM-2-K18]">
      <seq>aggtaaacctctttattttgttaagtagcatgttctatgccatctatacttgctttgtatagtttctgttctgcgttaattcctgttgtagatgcttagttttgttatgtgtaatgaataacaactcactggtttgaaagctttaaatatgtaagttgggtaattggattcaaaactttggttctagtattttatttctcgtcttaatagtttcttaaatacaggtgatttgctctttatagtttagttttcttaattatatcggaaatggataagaagcctcttgtttgttcttatgttagatattattctcttttaggtctagtcgatttgttttctttttaaatgccccgtgtaattcaaattatctcaaggtttctttgcttctcaaatagatgttggtctcattttgatttttaatgtgagctcatttaaagttcctttccattttgtgtcttaaactgtttatttgagatatgttatctagttttgaatgttcactggcttagattaatattatttatgattgattctaattcttatcttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="33295" stop="34441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33592" g_stop="34141" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E269456" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33592" e_stop="34141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAAACCTCTTTATTTTGTTAAGTAGCATGTTCTATGCCATCTATACTTGCTTTGTATAGTTTCTGTTCTGCGTTAATTCCTGTTGTAGATGCTTAGTTTTGTTATGTGTAATGAATAACAACTCACTGGTTTGAAAGCTTTAAATATGTAAGTTGGGTAATTGGATTCAAAACTTTGGTTCTAGTATTTTATTTCTCGTCTTAATAGTTTCTTAAATACAGGTGATTTGCTCTTTATAGTTTAGTTTTCTTAATTATATCGGAAATGGATAAGAAGCCTCTTGTTTGTTCTTATGTTAGATATTATTCTCTTTTAGGTCTAGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATCTCAAGGTTTCTTTGCTTCTCAAATAGATGTTGGTCTCATTTTGATTTTTAATGTGAGCTCATTTAAAGTTCCTTTCCATTTTGTGTCTTAAACTGTTTATTTGAGATATGTTATCTAGTTTTGAATGTTCACTGGCTTAGATTAATATTATTTATGATTGATTCTAATTCTTATCTTTTCT</genome_strand>
        <mrna_strand>AGGTAAACCTCTTTATTTTGTTAAGTAGCATGTTCTATGCCATCTATACTTGCTTTGTATAGTTTCTGTTCTGCGTTAATTCCTGTTGTAGATGCTTAGTTTTGTTATGTGTAATGAATAACAACTCACTGGTTTGAAAGCTTTAAATATGTAAGTTGGGTAATTGGATTCAAAACTTTGGTTCTAGTATTTTATTTCTCGTCTTAATAGTTTCTTAAATACAGGTGATTTGCTCTTTATAGTTTAGTTTTCTTAATTATATCGGAAATGGATAAGAAGCCTCTTGTTTGTTCTTATGTTAGATATTATTCTCTTTTAGGTCTAGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATCTCAAGGTTTCTTTGCTTCTCAAATAGATGTTGGTCTCATTTTGATTTTTAATGTGAGCTCATTTAAAGTTCCTTTCCATTTTGTGTCTTAAACTGTTTATTTGAGATATGTTATCTAGTTTTGAATGTTCACTGGCTTAGATTAATATTATTTATGATTGATTCTAATTCTTATCTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268791" ref_strand="+" ref_description="SGN-E268791 [cLEM-4-D11]">
      <seq>ttgggtaattggattcaaaactttggttctagtattttatttctcgtcttaatagtttcttaaatacaggtgatttgctctttatagtttagttttcttaattatatcggaaatggataagaagcctcttgtttgttcttatgttagatattattctcttttaggtctagtcgatttgttttctttttaaatgccccgtgtaattcaaattatctcaaggtttctttgcttctcaaatagatgttggtctcattttgatttttaatgtgagctcatttaaagttcctttccattttgtgtcttaaactgtttatttgagatatgttatctagttttgaatgttcactggcttagattaatattatttatgattgattctaattcttatcttttcttccttttctctactctgcatgagcacttcgagttcaatggactccacttctcttgcattattccacttcttgagtcaaccttcttcggagtcgtgaaagggagtcatgttattgggttaaacacccaaaaatcagcagcaacaacagctccaaatagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="33447" stop="34601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33747" g_stop="34301" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E268791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33747" e_stop="34301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTAATTGGATTCAAAACTTTGGTTCTAGTATTTTATTTCTCGTCTTAATAGTTTCTTAAATACAGGTGATTTGCTCTTTATAGTTTAGTTTTCTTAATTATATCGGAAATGGATAAGAAGCCTCTTGTTTGTTCTTATGTTAGATATTATTCTCTTTTAGGTCTAGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATCTCAAGGTTTCTTTGCTTCTCAAATAGATGTTGGTCTCATTTTGATTTTTAATGTGAGCTCATTTAAAGTTCCTTTCCATTTTGTGTCTTAAACTGTTTATTTGAGATATGTTATCTAGTTTTGAATGTTCACTGGCTTAGATTAATATTATTTATGATTGATTCTAATTCTTATCTTTTCTTCCTTTTCTCTACTCTGCATGAGCACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTC</genome_strand>
        <mrna_strand>TTGGGTAATTGGATTCAAAACTTTGGTTCTAGTATTTTATTTCTCGTCTTAATAGTTTCTTAAATACAGGTGATTTGCTCTTTATAGTTTAGTTTTCTTAATTATATCGGAAATGGATAAGAAGCCTCTTGTTTGTTCTTATGTTAGATATTATTCTCTTTTAGGTCTAGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATCTCAAGGTTTCTTTGCTTCTCAAATAGATGTTGGTCTCATTTTGATTTTTAATGTGAGCTCATTTAAAGTTCCTTTCCATTTTGTGTCTTAAACTGTTTATTTGAGATATGTTATCTAGTTTTGAATGTTCACTGGCTTAGATTAATATTATTTATGATTGATTCTAATTCTTATCTTTTCTTCCTTTTCTCTACTCTGCATGAGCACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370302" ref_strand="+" ref_description="SGN-E370302 [TUS-28-G13]">
      <seq>ggattcaaaactttggttctagtattttatttctcgtcttaatagtttcttaaatacaggtgatttgctctttatagtttagttttcttaattatatcggaaatggataagaagcctcttgtttgttcttatgttagatattattctcttttaggtctagtcgatttgttttctttttaaatgccccgtgtaattcaaattatctcaaggtttctttgcttctcaaatagatgttggtctcattttgatttttaatgtgagctcatttaaagttcctttccattttgtgtcttaaactgtttatttgagatatgttatctagttttgaatgttcactggcttagattaatattatttatgattgattctaattcttatcttttcttccttttctctactctgcatgagcacttcgagttcaatggactccacttctcttgcattattccacttcttgagtcaaccttcttcggagtcgtgaaagggagtcatgttattgggttaaacacccaaaaatcagcagcaacaacagctccaaatagctcaataaattgggtttaaacacccaaaaaaatgcaacagcagcagtagccttaaaaggccaaacctgaagcagcaactacaggtccccaaagggacacaaattgttgattcaagtccaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="33457" stop="34721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33757" g_stop="34421" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E370302" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33757" e_stop="34421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCAAAACTTTGGTTCTAGTATTTTATTTCTCGTCTTAATAGTTTCTTAAATACAGGTGATTTGCTCTTTATAGTTTAGTTTTCTTAATTATATCGGAAATGGATAAGAAGCCTCTTGTTTGTTCTTATGTTAGATATTATTCTCTTTTAGGTCTAGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATCTCAAGGTTTCTTTGCTTCTCAAATAGATGTTGGTCTCATTTTGATTTTTAATGTGAGCTCATTTAAAGTTCCTTTCCATTTTGTGTCTTAAACTGTTTATTTGAGATATGTTATCTAGTTTTGAATGTTCACTGGCTTAGATTAATATTATTTATGATTGATTCTAATTCTTATCTTTTCTTCCTTTTCTCTACTCTGCATGAGCACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCC-AAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTA</genome_strand>
        <mrna_strand>GGATTCAAAACTTTGGTTCTAGTATTTTATTTCTCGTCTTAATAGTTTCTTAAATACAGGTGATTTGCTCTTTATAGTTTAGTTTTCTTAATTATATCGGAAATGGATAAGAAGCCTCTTGTTTGTTCTTATGTTAGATATTATTCTCTTTTAGGTCTAGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATCTCAAGGTTTCTTTGCTTCTCAAATAGATGTTGGTCTCATTTTGATTTTTAATGTGAGCTCATTTAAAGTTCCTTTCCATTTTGTGTCTTAAACTGTTTATTTGAGATATGTTATCTAGTTTTGAATGTTCACTGGCTTAGATTAATATTATTTATGATTGATTCTAATTCTTATCTTTTCTTCCTTTTCTCTACTCTGCATGAGCACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCCAAAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270763" ref_strand="+" ref_description="SGN-E270763 [cLEM-6-L2]">
      <seq>ggattcaaaactttggttctagtattttatttctcgtcttaatagtttcttaaatacaggtgatttgctctttatagtttagttttcttaattatatcggaaatggataagaagcctcttgtttgttcttatgttagatattattctcttttaggtctagtcgatttgttttctttttaaatgccccgtgtaattcaaattatctcaaggtttctttgcttctcaaatagatgttggtctcattttgatttttaatgtgagctcatttaaagttcctttccattttgtgtcttaaactgtttatttgagatatgttatctagttttgaatgttcactggcttagattaatattatttatgattgattctaattcttatcttttcttccttttctctactctgcatgagcacttcgagttcaatggactccacttctcttgcattattccacttcttgagtcaaccttcttcggagtcgtgaaagggagtcatgttattgggttaaacacccaaaaatcagcagcaacaacagctccaaatagctcaataaattgggtttaaacacccaaaaaaatgcaacagcagcagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="33457" stop="34646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33757" g_stop="34346" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E270763" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33757" e_stop="34346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCAAAACTTTGGTTCTAGTATTTTATTTCTCGTCTTAATAGTTTCTTAAATACAGGTGATTTGCTCTTTATAGTTTAGTTTTCTTAATTATATCGGAAATGGATAAGAAGCCTCTTGTTTGTTCTTATGTTAGATATTATTCTCTTTTAGGTCTAGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATCTCAAGGTTTCTTTGCTTCTCAAATAGATGTTGGTCTCATTTTGATTTTTAATGTGAGCTCATTTAAAGTTCCTTTCCATTTTGTGTCTTAAACTGTTTATTTGAGATATGTTATCTAGTTTTGAATGTTCACTGGCTTAGATTAATATTATTTATGATTGATTCTAATTCTTATCTTTTCTTCCTTTTCTCTACTCTGCATGAGCACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCC-AAAAAATGCAACAGCAGCAGTAG</genome_strand>
        <mrna_strand>GGATTCAAAACTTTGGTTCTAGTATTTTATTTCTCGTCTTAATAGTTTCTTAAATACAGGTGATTTGCTCTTTATAGTTTAGTTTTCTTAATTATATCGGAAATGGATAAGAAGCCTCTTGTTTGTTCTTATGTTAGATATTATTCTCTTTTAGGTCTAGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATCTCAAGGTTTCTTTGCTTCTCAAATAGATGTTGGTCTCATTTTGATTTTTAATGTGAGCTCATTTAAAGTTCCTTTCCATTTTGTGTCTTAAACTGTTTATTTGAGATATGTTATCTAGTTTTGAATGTTCACTGGCTTAGATTAATATTATTTATGATTGATTCTAATTCTTATCTTTTCTTCCTTTTCTCTACTCTGCATGAGCACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCCAAAAAAATGCAACAGCAGCAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278436" ref_strand="+" ref_description="SGN-E278436 [cLEL-2-C3](-)">
      <seq>gtgctcatgcagagtagagaaaagtaacataatataagaattagaatcaatcataaataatattaatctaagccagtgaacattcaaaactagataacatatctcaaataaacagtttaagacacaaaatggaaaggaactttaaatgagctcacattaaaaatcaaaatgagaccaacatctatttgagaagcaaagaaaccttgagataatttgaattacacggggcatttaaaaagaaaacaaatcgactagacctgaaagagaataatatctaacataaccccaaacaagaggcttcttatccattaactctttatagtttagtttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="34467" stop="33543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34167" g_stop="33861" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E278436" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34167" e_stop="33861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTCATGCAGAGTAGAGAAAAGGAAGAAAAGATAAGAATTAGAATCAATCATAAATAATATTAATCTAAGCCAGTGAACATTCAAAACTAGATAACATATCTCAAATAAACAGTTTAAGACACAAAATGGAAAGGAACTTTAAATGAGCTCACATTAAAAATCAAAATGAGACCAACATCTATTTGAGAAGCAAAGAAACCTTGAGATAATTTGAATTACACGGGGCATTTAAAAAGAAAACAAATCGACTAGACCTAAAAGAGAATAATATCTAACATAAGAACAAACAAGAGGCTTCTTATCC</genome_strand>
        <mrna_strand>GTGCTCATGCAGAGTAGAGAAAAGTAACATAATATAAGAATTAGAATCAATCATAAATAATATTAATCTAAGCCAGTGAACATTCAAAACTAGATAACATATCTCAAATAAACAGTTTAAGACACAAAATGGAAAGGAACTTTAAATGAGCTCACATTAAAAATCAAAATGAGACCAACATCTATTTGAGAAGCAAAGAAACCTTGAGATAATTTGAATTACACGGGGCATTTAAAAAGAAAACAAATCGACTAGACCTGAAAGAGAATAATATCTAACATAACCCCAAACAAGAGGCTTCTTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370301" ref_strand="+" ref_description="SGN-E370301 [TUS-28-G13](-)">
      <seq>agtcgatttgttttctttttaaatgccccgtgtaattcaaattatttcaaagttttcttggttttcaaataaatgttggtttcattttgattttaaatgtgagctcatttaaagttcctttccattttgtgtcttaaactgtttatttgagatatgttatctagttttgaatgttcactggcttagattaatattatttatgattgattctaattcttatcttttcttccttttctctactctgcatgagcacttcgagttcaatggactccacttctcttgcattattccacttcttgagtcaaccttcttcggagtcgtgaaagggagtcatgttattgggttaaacacccaaaaatcagcagcaacaacagctccaaatagctcaataaattgggtttaaacacccaaaaaaatgcaacagcagcagtagccttaaaaggccaaacctgaagcagcaactacaggtccccaaagggacacaaattgttgattcaagtccaatttatatagtaatcccggcagcagctaagcaagaagcatgaaatgggggttaaaaaccaaaatcgatgaagtaacaaatcgacatttcagcccccgaaatttcagttttataatttattatttatgtttgtcttctcgttattattttggtcattgtgaatgctaaccctttgttttgttgttaactttttttaaaacttagatgaatcctttggaggttttcgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="33615" stop="34943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33915" g_stop="34650" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E370301" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33915" e_stop="34650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATCTCAAGGTTTCTTTGCTTCTCAAATAGATGTTGGTCTCATTTTGATTTTTAATGTGAGCTCATTTAAAGTTCCTTTCCATTTTGTGTCTTAAACTGTTTATTTGAGATATGTTATCTAGTTTTGAATGTTCACTGGCTTAGATTAATATTATTTATGATTGATTCTAATTCTTATCTTTTCTTCCTTTTCTCTACTCTGCATGAGCACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCC-AAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTATATAGTAATCCCGGCAGCAGCTAAGCAAGAAGCATGAAATGGGGGTTAAAAACCAAAATCGATGAAGTAACAAATCGACATTTCAGCCCCCGAAATTTCAGTTTTATAATTTATTATTTATGTTTGTCTTCTCGTTATTATTTTGGTCATTGTGAATGCTAACCCTTTGTTTTGTTGTTAACTTTTTTTAAAACTTAGATGAATCCTTTGGAGGTTTTCGAATGGCTAT</genome_strand>
        <mrna_strand>AGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATTTCAAAGTTTTCTTGGTTTTCAAATAAATGTTGGTTTCATTTTGATTTTAAATGTGAGCTCATTTAAAGTTCCTTTCCATTTTGTGTCTTAAACTGTTTATTTGAGATATGTTATCTAGTTTTGAATGTTCACTGGCTTAGATTAATATTATTTATGATTGATTCTAATTCTTATCTTTTCTTCCTTTTCTCTACTCTGCATGAGCACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCCAAAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTATATAGTAATCCCGGCAGCAGCTAAGCAAGAAGCATGAAATGGGGGTTAAAAACCAAAATCGATGAAGTAACAAATCGACATTTCAGCCCCCGAAATTTCAGTTTTATAATTTATTATTTATGTTTGTCTTCTCGTTATTATTTTGGTCATTGTGAATGCTAACCCTTTGTTTTGTTGTTAACTTTTTTTAAAACTTAGATGAATCCTTTGGAGGTTTTCGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288739" ref_strand="+" ref_description="SGN-E288739 [cLES-8-L14]">
      <seq>tgcatgagcacttcgagttcaatggactccacttctcttgcattattccacttcttgagtcaaccttcttcggagtcgtgaaagggagtcatgttattgggttaaacacccaaaaatcagcagcaacaacagctccaaatagctcaataaattgggtttaaacacccaaaaaatgcaacagcagcagtagccttaaaaggccaaacctgaagcagcaactacaggtccccaaagggacacaaattgttgattcaagtccaatttatatagtaatcccggcagcagctaagcaagaagcatgaaatgggggttaaaaaccaaaatcgatgaagtaacaaatcgacatttcagcccccgaaatttcagttntataatttattatttatgtttgtcttctcgttattattttggtcattgtgaatgctaaccctttgttttgttggtaactttttttaaaacttagatgaatcctttggaggttttcgaatggctattccatttctttacttgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="33857" stop="34970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34157" g_stop="34670" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E288739" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34157" e_stop="34670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGAGCACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCCAAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTATATAGTAATCCCGGCAGCAGCTAAGCAAGAAGCATGAAATGGGGGTTAAAAACCAAAATCGATGAAGTAACAAATCGACATTTCAGCCCCCGAAATTTCAGTTTTATAATTTATTATTTATGTTTGTCTTCTCGTTATTATTTTGGTCATTGTGAATGCTAACCCTTTGTTTTGTTGTTAACTTTTTTTAAAACTTAGATGAATCCTTTGGAGGTTTTCGAATGGCTATTCCATTTCGTTACTTGTTTA</genome_strand>
        <mrna_strand>TGCATGAGCACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCCAAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTATATAGTAATCCCGGCAGCAGCTAAGCAAGAAGCATGAAATGGGGGTTAAAAACCAAAATCGATGAAGTAACAAATCGACATTTCAGCCCCCGAAATTTCAGTTNTATAATTTATTATTTATGTTTGTCTTCTCGTTATTATTTTGGTCATTGTGAATGCTAACCCTTTGTTTTGTTGGTAACTTTTTTTAAAACTTAGATGAATCCTTTGGAGGTTTTCGAATGGCTATTCCATTTCTTTACTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293771" ref_strand="+" ref_description="SGN-E293771 [cLET-21-N10]">
      <seq>cacttcgagttcaatggactccacttctcttgcattattccacttcttgagtcaaccttcttcggagtcgtgaaagggagtcatgttattgggttaaacacccaaaaatcagcagcaacaacagctccaaatagctcaataaattgggtttaaacacccaaaaaatgcaacagcagcagtagccttaaaaggccaaacctgaagcagcaactacaggtccccaaagggacacaaattgttgattcaagtccaatttatatagtaatcccggcagcagctaagcaagaagcatgaaatgggggttaaaaaccaaaatcgatgaagtaacaaatcgacatttcagcccccgaaatttcagttttataatttattatttatgtttgtcttctcgttattattttggtcattgtgaatgctaaccctttgttttgttgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="33865" stop="34902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34165" g_stop="34602" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E293771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34165" e_stop="34602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCCAAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTATATAGTAATCCCGGCAGCAGCTAAGCAAGAAGCATGAAATGGGGGTTAAAAACCAAAATCGATGAAGTAACAAATCGACATTTCAGCCCCCGAAATTTCAGTTTTATAATTTATTATTTATGTTTGTCTTCTCGTTATTATTTTGGTCATTGTGAATGCTAACCCTTTGTTTTGTTGTTAA</genome_strand>
        <mrna_strand>CACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCCAAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTATATAGTAATCCCGGCAGCAGCTAAGCAAGAAGCATGAAATGGGGGTTAAAAACCAAAATCGATGAAGTAACAAATCGACATTTCAGCCCCCGAAATTTCAGTTTTATAATTTATTATTTATGTTTGTCTTCTCGTTATTATTTTGGTCATTGTGAATGCTAACCCTTTGTTTTGTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226364" ref_strand="+" ref_description="SGN-E226364 [cLEL-26-O6](-)">
      <seq>tggactccacttctcctgcattattccacttcttgagtcaaccttcttcggagtcgtgaaagggagtcatgttattgggttaagcacccaaaaatcagcagcaacaacagctccaaatagctcaataaattgggtttaaacacccaaaaaatgcaacagcagcagtagccttaaaaggccaaacctgaagcagcaactacaggtccccaaagggacacaaattgttgattcaagtccaatttatatagtaatcccggcagcagctaagcaagaagcatgaaatgggggttaaaaaccaaaatcgatgaagtaacaaatcgacatttcagcccccgaaatttcagttttataatttattatttatgtttgtcttctcgttattattttggtcattgtgaatgctaaccctttgttttgttgttaactttttttaaaacttagatgaatcctttggaggaattagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="33879" stop="34943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34179" g_stop="34634" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="480"/>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E226364" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34179" e_stop="34634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCCAAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTATATAGTAATCCCGGCAGCAGCTAAGCAAGAAGCATGAAATGGGGGTTAAAAACCAAAATCGATGAAGTAACAAATCGACATTTCAGCCCCCGAAATTTCAGTTTTATAATTTATTATTTATGTTTGTCTTCTCGTTATTATTTTGGTCATTGTGAATGCTAACCCTTTGTTTTGTTGTTAACTTTTTTTAAAACTTAGATGAATCCTTTGGAG</genome_strand>
        <mrna_strand>TGGACTCCACTTCTCCTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAGCACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCCAAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTATATAGTAATCCCGGCAGCAGCTAAGCAAGAAGCATGAAATGGGGGTTAAAAACCAAAATCGATGAAGTAACAAATCGACATTTCAGCCCCCGAAATTTCAGTTTTATAATTTATTATTTATGTTTGTCTTCTCGTTATTATTTTGGTCATTGTGAATGCTAACCCTTTGTTTTGTTGTTAACTTTTTTTAAAACTTAGATGAATCCTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226770" ref_strand="+" ref_description="SGN-E226770 [cLEL-26-O8](-)">
      <seq>actccacttctcttgcattattccacttcttgagtcaaccttcttcggagtcgtgaaagggagtcatgttattgggttaaacacccaaaaatcagcagcaacaacagctccaaatagctcaataaattgggtttaaacacccaaaaaatgcaacagcagcagtagccttaaaaggccaaacctgaagcagcaactacaggtccccaaagggacacaaattgttgattcaagtccaatttatatagtaatcccggcagcagctaagcaagaagcatgaaatgggggttaaaaaccaaaatcgatgaagtaacaaatcgacatttcagcccccgaaatttcagttttataatttattatttatgtttgtcttctcgttattattttggtcattgtgaatgctaaccctttgttttgttgttaactttttttaaaacttagatgaatcctttggaggttttcgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="33882" stop="34943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34182" g_stop="34642" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="477"/>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E226770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34182" e_stop="34642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCCAAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTATATAGTAATCCCGGCAGCAGCTAAGCAAGAAGCATGAAATGGGGGTTAAAAACCAAAATCGATGAAGTAACAAATCGACATTTCAGCCCCCGAAATTTCAGTTTTATAATTTATTATTTATGTTTGTCTTCTCGTTATTATTTTGGTCATTGTGAATGCTAACCCTTTGTTTTGTTGTTAACTTTTTTTAAAACTTAGATGAATCCTTTGGAGGTTTTCGA</genome_strand>
        <mrna_strand>ACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCCAAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTATATAGTAATCCCGGCAGCAGCTAAGCAAGAAGCATGAAATGGGGGTTAAAAACCAAAATCGATGAAGTAACAAATCGACATTTCAGCCCCCGAAATTTCAGTTTTATAATTTATTATTTATGTTTGTCTTCTCGTTATTATTTTGGTCATTGTGAATGCTAACCCTTTGTTTTGTTGTTAACTTTTTTTAAAACTTAGATGAATCCTTTGGAGGTTTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308494" ref_strand="+" ref_description="SGN-E308494 [cLEY-21-O8]">
      <seq>caagaaccacaatagcaatttttgcccttttcattgttttatcatcactttgcttcaacccaattaatagctcaagggatatttcttttgataatccattaacacagagaaacctcttatcccaaaagacaagtgatattcatcctgatgttgctgccaattgtagaatttgtatggaacaatgtggatcttgtacttgttgcattgcaaaattgaagcattaattaatattacttatgttgtaaaactatattgttgtttgtattgtttctagtacgactttttttattattgtatttgaatttaatatgttttatgtgagcggagagtctatcagaaataacttctctatcttcacaagatagaagtaagattaaatacacaaaanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="39661" stop="38675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39361" g_stop="38976" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="406"/>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E308494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39361" e_stop="38976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACCACAATAGCAATTTTTGCCCTTTTCATTGTTTTATCATCACTTTGCTTCAACCCAATTAATAGCTCAAGGGATATTTCTTTTGATAATCCATTAACACAGAGAAACCTCTTATCCCAAAAGACAAGTGATATTCATCCTGATGTTGCTGCCAATTGTAGAATTTGTATGGAACAATGTGGATCTTGTACTTGTTGCATTGCAAAATTGAAGCATTAATTAATATTACTTATGTTGTAAAACTATATTGTTGTTTGTATTGTTTCTAGTACGACTTTTTTTATTATTGTATTTGAATTTAATATGTTTTATGTGAGCGGAGAGTCTATCAGAAATAACTTCTCTATCTTCACAAGATAGAAGTAAGATTAAATACACAAA</genome_strand>
        <mrna_strand>CAAGAACCACAATAGCAATTTTTGCCCTTTTCATTGTTTTATCATCACTTTGCTTCAACCCAATTAATAGCTCAAGGGATATTTCTTTTGATAATCCATTAACACAGAGAAACCTCTTATCCCAAAAGACAAGTGATATTCATCCTGATGTTGCTGCCAATTGTAGAATTTGTATGGAACAATGTGGATCTTGTACTTGTTGCATTGCAAAATTGAAGCATTAATTAATATTACTTATGTTGTAAAACTATATTGTTGTTTGTATTGTTTCTAGTACGACTTTTTTTATTATTGTATTTGAATTTAATATGTTTTATGTGAGCGGAGAGTCTATCAGAAATAACTTCTCTATCTTCACAAGATAGAAGTAAGATTAAATACACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308528" ref_strand="+" ref_description="SGN-E308528 [cLEY-21-P7]">
      <seq>caagaaccacaatagcaatttttgcccttttcattgttttatcatcactttgcttcaacccaattaatagctcaagggatatttcttttgataatccattaacacagagaaacctcttatcccaaaagacaagtgatattcatcctgatgttgctgccaattgtagaatttgtatggaacaatgtggatcttgtacttgttgcattgcaaaattgaagcattaattaatattacttatgttgtaaaactatattgttgtttgtattgtttctagtacgactttttttattattgtatttgaatttaatatgttttatgtgagcggagagtctatcagaaataacttctctatcttcacaagatagaagtaagattaaatacaccnccgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="39661" stop="38679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39361" g_stop="38995" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="406"/>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E308528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39361" e_stop="38995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACCACAATAGCAATTTTTGCCCTTTTCATTGTTTTATCATCACTTTGCTTCAACCCAATTAATAGCTCAAGGGATATTTCTTTTGATAATCCATTAACACAGAGAAACCTCTTATCCCAAAAGACAAGTGATATTCATCCTGATGTTGCTGCCAATTGTAGAATTTGTATGGAACAATGTGGATCTTGTACTTGTTGCATTGCAAAATTGAAGCATTAATTAATATTACTTATGTTGTAAAACTATATTGTTGTTTGTATTGTTTCTAGTACGACTTTTTTTATTATTGTATTTGAATTTAATATGTTTTATGTGAGCGGAGAGTCTATCAGAAATAACTTCTCTATCTTCACAAGATAGAA</genome_strand>
        <mrna_strand>CAAGAACCACAATAGCAATTTTTGCCCTTTTCATTGTTTTATCATCACTTTGCTTCAACCCAATTAATAGCTCAAGGGATATTTCTTTTGATAATCCATTAACACAGAGAAACCTCTTATCCCAAAAGACAAGTGATATTCATCCTGATGTTGCTGCCAATTGTAGAATTTGTATGGAACAATGTGGATCTTGTACTTGTTGCATTGCAAAATTGAAGCATTAATTAATATTACTTATGTTGTAAAACTATATTGTTGTTTGTATTGTTTCTAGTACGACTTTTTTTATTATTGTATTTGAATTTAATATGTTTTATGTGAGCGGAGAGTCTATCAGAAATAACTTCTCTATCTTCACAAGATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="-" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>cacaaataacaagaagataaacataaaagtaggggtcagtacaaaccacgggtactgagtagatatcatcggccaactcaaaatagggaacagtatgtattaagcaatatcataaaatcaactaatatccttaacatgcagcatttatagttaccataacccttggttacaacaccaagcacatcaatgaggactcacacctcctcatcatactcatttgggaatttagttcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="15099" stop="46147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41813" g_stop="41916" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41917" i_stop="45714" i_length="3798">
            <donor d_prob="0.923" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45715" g_stop="45847" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="236" r_length="133" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E209683" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41813" e_stop="41916"/>
          <exon e_start="45715" e_stop="45847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATAACAAGAAGGAAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAGAACAGTATATATCAAGTAATATCATAAATCAACTATAAAACTCAACATGTAGCAACAACAAGTACTATAATCATCAGTAAGTACCATCAAGTTCATCCATGAGGGCTCAAGCCTCAACACCATACTCATTTGGGAATTAAGTTTTATTAAATTGAATATATTATCATCTTCCAAGATTCATTATCTTTCTTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTACTACTATGTGTCGGTACGTGACACTCCGATCCCCTAATTCTATGTGTCGGAACGTGACACTCCGATCCCCTACATGTGTCGGTACGTGACACTCCGATCCACTAATACTATGTGTCGGTACGTGACACTCTGATCCCCTAATTCTATGTGTCGGAACGTGACACTCCGATCCTCTACATGTGTCGGTACGTGACACTCCGATCCCCTACATGTGTCGGAACGTGACACTCCGATCCCCTACATGTGTCGGTACGTGACACTCCGATCCCCTAATTCTATGTGTCGAAACGTGACACTCCGATCCACTAATACTATGTGTCGGTACGTGACACTCCGATCCACTAATACTATGTGTCGGAACGTGACACTCCGATCCACTAATACTATGTGTCGGAACGTGACACTCCGATCCACTAATATATTCTGTAAATCATCAAGCCTTCTCTATACCAAGGCATCATCAATCCCATTACTTTAATTCATCAAGCTTTCTTCTATACCAAGGCATCATCATTAATAATGTATATTAAAGTTTCTTTTCAAGATTTGGGATTCAATATTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCATGCAAACATACCATTAAGCATATAGTAGGGCTTACAATACTACCAATACATATCATTCACTATTGAGAGTTTACTTATGAAAGCATGAAAACCATAACCTACCTTCACCGAAGAATTGGAATCAACAAGCAATTTCCCAAGCTTTGATATTCCCTCTGCCTCTTGATCGATCAATTTCTCTCTCTCCTTGTTCTCTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAGTTAACATATAATTAAGTGTAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTATTAATATAAACCCACAAAATCTATAATTAAGGAAGGAATAGTCCAAAAACGTCCCTTAAAACGTGTAAGGAAATCCGATTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGAGTCAGAGAGTCAATTTCCACTGAACAATCTATGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTCACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCAACGGTCCGTCGTGCCCATGACGGATCGTCGTTTGGTCCGTCGCCTCAGCCTATTTTTCCAGAATTGAAGTTTGTTGCTCAAAACGACTAAACAGGTCGTTACAATTACTTGAATACTTATATTTTAAACGTTTAATTTATAGATAGCCCGATAAAATTGTATATTCAGTGAAATTATATTTTGATTTGTAAAATTTATTGTGAAATATAATCATTATGCAAGTAGAAAAGTAATTAACAACTGGCAGTTGAGTTGTATTTCAATAAACATTTGGTGATAGTTCATATATGAATCAACAAACTTGATGATTTAGATATAAAATTCAAAAAAAAAATATTATTATATTTCACTGTATATTTTATTATTTTTCGCAATTATTTAAAATCTAAAGCTTTAACTAATAACTAAAACATAACAATTAGAAAATGTTTTGTTACATCACAAGGGAATTTCGGACCAATGATAAAATTATCTTTTGTGTGATTTATAGATTACGTGTTTGGGTCCTACAATCACTAAATATTTATATAAGGATTGATTATCTACATCACACCCCTTAAAAGTAGAGTAAATTTTACGTTTAGCAAACATAAAAATCATATTTGTGTGTTATAGCTATAGTTTGTATGATTGTGCTCCATAGCAAACTAATTTATGTTTACTATGGAACATCATATTTGTATAAATCCATGGGGGCATCAGATTTGTATAAATAATTTGCAGCCTCATATTTGTATAAATCACTGACAACCTCTCGTTTGCATAAATCGTTGGCAGTTGCTCCATTCAATTTTATGTATTAGTAGATCTGCATAAAATTTGAATTTGTATACAACTGAATCGGAATAAAACATTTGAATATCACGTCTCTCTTTCTCTTTATACAACACAAATTATAAATTGTAATTTTTATAATTTATGTTTGTATAAAGCGAGAAAGAGAGAAAGACAAAAGAAAACTGGCAGGGGAAGATCTGTATTTGTATAATTATAATTGTATAAGACGAAAATATATATATTTGTATTTGTATATACACTTTTCTCTCGCTTTATACAAACACAAATGTGTTTTATACATTTGTGTTTGTATAAAGTGAGAGAGGCGATGGAGAGACTAGAGAGCGAGAGAGGGAGAGTGTCGAGCGAAAAAGCTGGGGAGAGAGGTGAATGACAACTGTTTGCTATGGTTTACAATTAAATCAAATTATGGTTATAGCATTTAACTTAAATTAATAGTTCACTATTTTATACAATAAAAGTATTGTCCTAATATCCTTCCGCGAATCCTACATGAATGAAGGATACTTTATACATCGATAGGTCGATTACCCTTTTTTAAAACATTTTTTTAATTAGTTTATCGAGTCCTACAATCACTAATGTTATTATAACCTTTTTTTAAATGTTATTATAACCTATCTAAACTTAATAACGCAAAAATGTTATAAACCATGTCTGAAAATATTTTTGAGAGAATTTTTTTTTTATATAAAATAAAAAGAGAAAAAAATATGCACCAGCCAAGAATCGAGCCTGGGTCTAATTAGAAAAGTTAATGATAGTTTTATCACTTAGTCAACTAAATTGTTGTTTAATTAGCAAGTTGATGATTTAATTAGCAACCAACATGTTGCACATGAACCACACACCATCTCACTTGAATATTTATATTTTAAATGTTTAATTTATAGATAGTTCCTAAAGTTGTGCATTCATTAAAATATTTTGATTTGTAAAATTTATTGTGAAATATTATAGGAAAAATAATTAATAACTCATAGTTGAGTTGTGTTTTAATAAATATTTGATGATAGTACATAGAGTCACAAATCTGATAGTTTAAATATAAAATTTAAAAAATCATGCTATGTTAGATATGTTTTTAACATTTAACTCTAAAGTAACCGAAAAAGGCAGAGGAGTGGGGGAATAATGAACTTTTACATATTGAAGAGTGCCCAAGTACAAAAGCTGAACATAAAAGAGTTTAATTTTTATACACTAAATAATATAAATAATAATATCAATTCAAAACATATACAACTTTAGAAGTTATTAAACCTATTCTAGTTCCACCATTGCATAAGATAGTACATGATTGGATTGGTTCGGATTTTTAAATATCAAAATCAAATCATTCGTGTAAAAAATTTAAATGTATAAATCAAATCAAACTAATAAAATTTAGTTTTTTTGTCACGACCCAAAACGGGTCGCGAGTGGCACCCACACTTATCCTACTATGTGAGCGAACCAACCAATCTAAACCCCAACATTTTCAAACATAGTAAACAGAATAAAATGCGGAAGACTTAAAACTCAATAATAACTTCTAAAACTCAAAATAGAAAACAGTATATATCAGATAATATCATAAAATCAACTACAATACTCAACATGCGGCATTTACAATTACCATAACCCTTGGTCACAACACCAAGCTCATCAAAGAGGACTCACGCCTCCCCATCATACTCATTTGGGAATTAGGTTCATTA</genome_strand>
        <mrna_strand>CACAAATAACAAGAA-GATAAACATAAAAGTAGGGGTCAGTACAAACCACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGGGAACAGTATGTATTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATCATAAAATCAACTAATATCCTTAACATGCAGCATTTATAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTCATTTGGGAATTTAGTTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="78681" stop="77363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78382" g_stop="77663" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78382" e_stop="77663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGGAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAACGTCCGGGGGATATACTTCTCCATAAACAAGTTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAATATGCGACCGCCACCACATTTTGGTGTTCCCTTGAAACTGATAAGTCACAAATTCCACACAAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAAAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGCACTTCTGAAACTGGAGATGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATTAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACAATCGCTCATTCTGCACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="78679" stop="77416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78379" g_stop="77716" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78379" e_stop="77716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGGAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAACGTCCGGGGGATATACTTCTCCATAAACAAGTTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAATATGCGACCGCCACCACATTTTGGTGTTCCCTTGAAACTGATAAGTCACAAATTCCACACAAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAAAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGCACTTCTGAAACTGGAGATGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATTAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACA-ATCGCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="77986" stop="116574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78286" g_stop="78458" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78459" i_stop="79202" i_length="744">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79203" g_stop="79730" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78286" e_stop="78458"/>
          <exon e_start="79203" e_stop="79730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTTGTGGTAGAGGTGGAAGGAGTGAAGCCATATGAATTCACCATGGCATCGACATCAAAGGGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACGCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCTAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTATCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAAAATATGGTGGCCGAGGTAATGGTGGCCACCAGAACGGCCGAGGTGATGGGCAACCTGTAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGGGTGAGAGGGCCCATTGCTACGCTTTCCCTTGGAGATCTGAAGTAGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACAATTTCTTATGTATCTTCCTCATTTGGTAATGGTCTAAATTTACATTGTGAATTACTTCATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCCTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTATGGGTATGACTTGGCTTTTTTCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCGGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTCTGTATTGACCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTGTTGAACAAAAGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="79403" stop="78245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79103" g_stop="78545" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79103" e_stop="78545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATGAAGTAATTCACAATGTAAATTTAGACCATTACCAAATGAGGAAGATACATAAGAAATTGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCTACTTCAGATCTCCAAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTACAGGTTGCCCATCACCTCGGCCGTTCTGGTGGCCACCATTACCTCGGCCACCATATTTTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGATAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTAGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGCGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="80013" stop="78652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79713" g_stop="78952" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79713" e_stop="78952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCTTTTGTTCAACAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGAAAAAAGCCAAGTCATACCCATAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAGGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATGAAGTAATTCACAATGTAAATTTAGACCATTACCAAATGAGGAAGATACATAAGAAATTGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="80013" stop="78754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79713" g_stop="79053" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79713" e_stop="79053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCTTTTGTTCAACAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGAAAAAAGCCAAGTCATACCCATAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAGGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATGAAGTAATTCACAATGTAAATTTAGACCATTAC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="80082" stop="78824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79782" g_stop="79124" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79782" e_stop="79124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGGTACTTGTTCTTTATGGTTACCTTGTTCAACTGCTGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCTTTTGTTCAACAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGAAAAAAGCCAAGTCATACCCATAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAGGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="80602" stop="79290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80302" g_stop="79590" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80302" e_stop="79590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGCCTCAATCTTAGAAGGATCTACCATCACCTCATCCTTCGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTCCTTACTTTTAAAGTATATCAGTATATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCTGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGGCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCCCAGGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGGTACTTGTTCTTTATGGTTACCTTGTTCAACTGCTGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCTTTTGTTCAACAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="80602" stop="79407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80302" g_stop="79707" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80302" e_stop="79707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGCCTCAATCTTAGAAGGATCTACCATCACCTCATCCTTCGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTCCTTACTTTTAAAGTATATCAGTATATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCTGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGGCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCCCAGGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGGTACTTGTTCTTTATGGTTACCTTGTTCAACTGCTGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355794" ref_strand="+" ref_description="SGN-E355794 [cLHT-12-K19]">
      <seq>aatggccggtgcctcccttcttcatctgtcaaagactcaatttttttcaacattttaatatcttcttcttcttcatagtttctctctctacacctctgtctccataaaaatatataaatttgtctgaatttttcttcttttttttgttcttgattttcgtatatatatactgtctctctgtatatctgcaaaaaaaaagaatatcaaaaaaataattagtacagtacaatcattttccaggcaaaggaagaaaaggggaggtccaaaatatacaatcttggaaccccattacttcaattattcacttcctttttggtgtaccactttttcatattttgccagctttgcataacccctttttcttctgtgttttgaatacccttttggtttttcttctctgaggagggagagtttttgctgcatagatctctctgtagaggaggaatagttggttttgtcagaatattgagatagctgtggttagaaacttcagcattccagtttcctttgttgaaagaagtggtaacaaggaggactttgcacaatgtctggctctgtgaaaactttggatcctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="95695" stop="98790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95995" g_stop="96440" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96441" i_stop="98361" i_length="1921">
            <donor d_prob="0.721" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98362" g_stop="98490" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="577" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E355794" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95995" e_stop="96440"/>
          <exon e_start="98362" e_stop="98490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCCGGTGCCTCCCTTCTTCATCTGTCAAAGACTCAATTTTTTTCAACATTTCAATA---TCTTCTTCTTCATAGTTTCTCTCTCTACACCTCTGTCTCCATAAAAATATATAAATTTGTCTGAA-TTTTCTTCTTTTTTTTGTTCTTGATTTTCGTATATATATACTGTCTCTCTGTATATCTGCAAAAAAAAAAAGAATATCAAAAAAATAATTAGTACGGTACAATCATTTTCCAGGCAAAGGGAGAAAAGGGGAGGTCCAAAATATACAATCTTGGAACCCCATTACTTCAATTATTCACTTCCTTTTTGGTGTACCACTTTTTCATATTTCGCCAGCTTTGCATAACCCCTTTTTCTTCTGTGTTTTGAATACCCTTTTGGTTTATCTTCTCTGTGGAGGGAGAGTTTTTGCTGCATAGATCTCTCTGTAGAGGAGGAATAGGTGTGTTTTCTTAATCATTTTGAGGGTTTTTGATCATTTGGGGTTTTTCGATTGTCCTTGCTCAGATCTTGTTTTTGTGAATTGAATTGATGTGATGTGTTTATTTTGGTCTAATTATTTTGTTGTTGTTGTTGTTGTTGTTTTTGAATAATCTGATGAGTGAAGATCTGTGCTTTAGTTTAGTTTTGAGGTATTGAGGAATTTGATTAATTGATATGCTGGATTTTGTTTGATCTGTTCATTCTATTGGTTGATTAAAGATGAACTCTTTTGTTTAAATTTGTCAAATGTTGTTTTGGAGAATGGTCATTTGACTTTTGTTTTTGGTTAAAATTTGTGAATTTTGGATGAGTATGTTTGATTATTAGGTGATCTTGCAAAAGATCATTACTTTCTGGTGTATGTTATGTATGAATTTTGATGAACTGATTATTGAGTTTTTGAATGGAGCGGAATGGATATTGAGGATTCATGTAGCTGATCCCAGCTTAGCTTGGGATCGAGGTCTACTAGTAGTTACTTAGATTGGGCTATAGGAAAGTTAAGTTAAGAAGCATGCAATGTTGCTGATGTAACAATGCTTCTCTGCGTCCTTGATAGTTCGTCTCATTCTGAGCATAGCTGGTTCAATGAGCATAGAGGAAGATATGTTAATTGAGGATGTTTGTTGTATATCTTTTACCGGTTTCTTAATTGTTTGGAATTTGCAGTGAATTAATGTTGGTGATGGATTTACTGTTAGTCTGTTTTTTAAAACAGAGAGTTCTATAGGAAGTTGCCAAAAGCAGAAGACGGAGGAACTTTTAAAGTGTGCAAGAGAGCCAAAGGAAAACTAAGAAGGCTATGAGTAAAGCTAGAGGGGAAGCTCAAGATGGCTGGTACCAAAAGTTAGGGACACGAGAAGGGGAGAAAGACATGTTTAAACTAGCATGATTGATTAATAAAAAGGATAAGAATTTAAACATGGGGAAGTGTATTGAAGATGATTCTCACCAAGTGTTGATAGTAGATAGGTCAATGAGAGATAGAGAGTTGATCACTTGTTCAACTCGAACCAAAAGAATAACATTTTGGACCTCCACACGTCCGTACACGATAGAAACTGTAGTTACACTCGTAGAATTAGGCCGACAGGAGTAAATGATGCCATGAGAAATATGAGGACTAGAAAAGCGTGTTGGCATAATATTATTCCCTCATGGGTATGGAAGTGTTTCGGAGAGGTTGGAGTATAATAACTAACTGAGCTATTGAATGCAATACTAAGAAGTGGTAGAATTTCCAACGAGTGGAGAAAGGTGGTAGAATTCCCAATGAGTGGAGAAAGAGTATTGATTTCAAGGGGATGAAGTTGATTTAAAATCACATAGAAGGAAGTTGTCTCAAAAGAATTGCAATTTCTTGAAATAAATGCAGACTTAGGTAAAGATAGGTTATAATGGAAGATATAGATGTCTACTGGTTGAGAAAAGGTTTTGGTCTTGTTAGTATGTTGATTTTGAGCTTATTGCTTTTGTAGGATATTTGACCTTATCATAGATTTCACTATATATAATTTATTCTCTGTTTTTCTTTTGGTATGGTATGACATGATCTGAACTTAAATGGGAAAAAACTTGGTCGGTGAGGACTCATAAAGCTGATTCTAACTTGTATGGGACTGACACGTAGTAGTAGTGGTAGTAGTGCTTGTAGTATGATTTCTAGCTTCTTAATAAGTTGTGGAACAAACATTGGGAAGTTGAAGAAACTGTATCATGGCTTCAAATATGAAGAACTTTCTGTTTTAGGATTGATTTGTTCTTATGAAGATTTCATTCTGATGTGTTACTGTAAACATCAATTTATTTCCTAAGTTGTTGCATTTTCAATTTGGTCTATATTCCACTAATACTTATTACTCTCATTTTCCATTTTACAGTTGGTTTTGTCAGAATATTGAGATAGCTGTGGTTAGAAACTTCAGCATTCCAGTTTCCTTTGTTGAAAGAAGTGGTAACAAGGAGGACTTTGCACAATGTCTGGCTCTGTGAAAACTTTGGATCCTGCA</genome_strand>
        <mrna_strand>AATGGCCGGTGCCTCCCTTCTTCATCTGTCAAAGACTCAATTTTTTTCAACATTTTAATATCTTCTTCTTCTTCATAGTTTCTCTCTCTACACCTCTGTCTCCATAAAAATATATAAATTTGTCTGAATTTTTCTTCTTTTTTTTGTTCTTGATTTTCGTATATATATACTGTCTCTCTGTATATCTGC--AAAAAAAAAGAATATCAAAAAAATAATTAGTACAGTACAATCATTTTCCAGGCAAAGGAAGAAAAGGGGAGGTCCAAAATATACAATCTTGGAACCCCATTACTTCAATTATTCACTTCCTTTTTGGTGTACCACTTTTTCATATTTTGCCAGCTTTGCATAACCCCTTTTTCTTCTGTGTTTTGAATACCCTTTTGGTTTTTCTTCTCTGAGGAGGGAGAGTTTTTGCTGCATAGATCTCTCTGTAGAGGAGGAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTTTGTCAGAATATTGAGATAGCTGTGGTTAGAAACTTCAGCATTCCAGTTTCCTTTGTTGAAAGAAGTGGTAACAAGGAGGACTTTGCACAATGTCTGGCTCTGTGAAAACTTTGGATCCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479039" ref_strand="+" ref_description="SGN-E479039 [cSTD-8-G8]">
      <seq>gtttctctctctacacttgtcttcataaaaatatataaatttatctgaatttcttcctctttttgttcttgattttcgtatatatagtgtctctctgtatatctgcaaaaaaaaagagaatatcaaaaattcaaaaaaataattacagcacaatcattttccaggcaaagggagaaaaggggaggtccaaaatatacaatcttggaaccccattactccaattattcacttcctttttggtgtacccctttttcatatttggccagctttgcataacccctttttcttctgtgttttgaatacccttttggtttttcttctctgtggagggagagttttgctgcatagatctctctgtagaggaggaatagttggttttgtgagaatattgagatagctgaggttaggagcttcagcattccagttccctttgttgaaagaagtggtaacaaggaggactttgcacaatgtctagctctgtgaaaactttggatccggcatttcagggtgcaggtcaaagagtagggactgaaatttggagaattgaggatttccaaccagttcctttgccaaaatctgattatggtaaattttactccggagattcatacatcatcttgcagacaacttcaggaaagggtggtgcttatttgtatgatatacatttctggcttggaaaggatactagtcaggatgaagctggaactgcagctatcaaaacagtggaaactgatgtggtcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="95769" stop="99355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96069" g_stop="96440" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96441" i_stop="98361" i_length="1921">
            <donor d_prob="0.721" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98362" g_stop="98513" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="523" r_length="152" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98514" i_stop="98696" i_length="183">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.167" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98697" g_stop="98796" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="623" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98797" i_stop="98874" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.034" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98875" g_stop="98943" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="692" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98944" i_stop="99020" i_length="77">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99021" g_stop="99071" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="743" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E479039" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96069" e_stop="96440"/>
          <exon e_start="98362" e_stop="98513"/>
          <exon e_start="98697" e_stop="98796"/>
          <exon e_start="98875" e_stop="98943"/>
          <exon e_start="99021" e_stop="99071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTCTCTACACCTCTGTCTCCATAAAAATATATAAATTTGTCTGAATTTTCTTCTTTTTTTTGTTCTTGATTTTCGTATATATATACTGTCTCTCTGTATATCTGCAAAAAAAAAAAGAATATC--AAA---AAAATAATTAGTACGGTACAATCATTTTCCAGGCAAAGGGAGAAAAGGGGAGGTCCAAAATATACAATCTTGGAACCCCATTACTTCAATTATTCACTTCCTTTTTGGTGTACCACTTTTTCATATTTCGCCAGCTTTGCATAACCCCTTTTTCTTCTGTGTTTTGAATACCCTTTTGGTTTATCTTCTCTGTGGAGGGAGAGTTTTTGCTGCATAGATCTCTCTGTAGAGGAGGAATAGGTGTGTTTTCTTAATCATTTTGAGGGTTTTTGATCATTTGGGGTTTTTCGATTGTCCTTGCTCAGATCTTGTTTTTGTGAATTGAATTGATGTGATGTGTTTATTTTGGTCTAATTATTTTGTTGTTGTTGTTGTTGTTGTTTTTGAATAATCTGATGAGTGAAGATCTGTGCTTTAGTTTAGTTTTGAGGTATTGAGGAATTTGATTAATTGATATGCTGGATTTTGTTTGATCTGTTCATTCTATTGGTTGATTAAAGATGAACTCTTTTGTTTAAATTTGTCAAATGTTGTTTTGGAGAATGGTCATTTGACTTTTGTTTTTGGTTAAAATTTGTGAATTTTGGATGAGTATGTTTGATTATTAGGTGATCTTGCAAAAGATCATTACTTTCTGGTGTATGTTATGTATGAATTTTGATGAACTGATTATTGAGTTTTTGAATGGAGCGGAATGGATATTGAGGATTCATGTAGCTGATCCCAGCTTAGCTTGGGATCGAGGTCTACTAGTAGTTACTTAGATTGGGCTATAGGAAAGTTAAGTTAAGAAGCATGCAATGTTGCTGATGTAACAATGCTTCTCTGCGTCCTTGATAGTTCGTCTCATTCTGAGCATAGCTGGTTCAATGAGCATAGAGGAAGATATGTTAATTGAGGATGTTTGTTGTATATCTTTTACCGGTTTCTTAATTGTTTGGAATTTGCAGTGAATTAATGTTGGTGATGGATTTACTGTTAGTCTGTTTTTTAAAACAGAGAGTTCTATAGGAAGTTGCCAAAAGCAGAAGACGGAGGAACTTTTAAAGTGTGCAAGAGAGCCAAAGGAAAACTAAGAAGGCTATGAGTAAAGCTAGAGGGGAAGCTCAAGATGGCTGGTACCAAAAGTTAGGGACACGAGAAGGGGAGAAAGACATGTTTAAACTAGCATGATTGATTAATAAAAAGGATAAGAATTTAAACATGGGGAAGTGTATTGAAGATGATTCTCACCAAGTGTTGATAGTAGATAGGTCAATGAGAGATAGAGAGTTGATCACTTGTTCAACTCGAACCAAAAGAATAACATTTTGGACCTCCACACGTCCGTACACGATAGAAACTGTAGTTACACTCGTAGAATTAGGCCGACAGGAGTAAATGATGCCATGAGAAATATGAGGACTAGAAAAGCGTGTTGGCATAATATTATTCCCTCATGGGTATGGAAGTGTTTCGGAGAGGTTGGAGTATAATAACTAACTGAGCTATTGAATGCAATACTAAGAAGTGGTAGAATTTCCAACGAGTGGAGAAAGGTGGTAGAATTCCCAATGAGTGGAGAAAGAGTATTGATTTCAAGGGGATGAAGTTGATTTAAAATCACATAGAAGGAAGTTGTCTCAAAAGAATTGCAATTTCTTGAAATAAATGCAGACTTAGGTAAAGATAGGTTATAATGGAAGATATAGATGTCTACTGGTTGAGAAAAGGTTTTGGTCTTGTTAGTATGTTGATTTTGAGCTTATTGCTTTTGTAGGATATTTGACCTTATCATAGATTTCACTATATATAATTTATTCTCTGTTTTTCTTTTGGTATGGTATGACATGATCTGAACTTAAATGGGAAAAAACTTGGTCGGTGAGGACTCATAAAGCTGATTCTAACTTGTATGGGACTGACACGTAGTAGTAGTGGTAGTAGTGCTTGTAGTATGATTTCTAGCTTCTTAATAAGTTGTGGAACAAACATTGGGAAGTTGAAGAAACTGTATCATGGCTTCAAATATGAAGAACTTTCTGTTTTAGGATTGATTTGTTCTTATGAAGATTTCATTCTGATGTGTTACTGTAAACATCAATTTATTTCCTAAGTTGTTGCATTTTCAATTTGGTCTATATTCCACTAATACTTATTACTCTCATTTTCCATTTTACAGTTGGTTTTGTCAGAATATTGAGATAGCTGTGGTTAGAAACTTCAGCATTCCAGTTTCCTTTGTTGAAAGAAGTGGTAACAAGGAGGACTTTGCACAATGTCTGGCTCTGTGAAAACTTTGGATCCTGCATTTCAGGGTGCAGGTCAAAGAGTGTATCCTTAACCGAGTTTGGTTCGTTGGTATTTCTTGAATTCATACTATTTACAGGAAGTCGTAAGGTGTTTAGTTGTGGTCTGACTGTTTAGTAGTCCTTGTAATTTTATCTTAATTATTTATTATTTAAACTTGGTCTGCTCAGAAATTTTGAAGTTCAGTTTCAACTTAACTTTATCTAGAGGGACTGAAATTTGGAGAATTGAGGATTTCCAACCAGTTCCTTTGCCAAAATCTGATTATGGTAAATTTTACTCCGGAGATTCATACATCATCTTGCAGGTACATATATTGATATACAACTTTTTGGTTTATTTTACACCGTGTTATCTTTACGGAATGTTTGCATTTATATGTCAGACAACTTCAGGAAAGGGTGGTGCTTATTTGTATGATATACATTTCTGGCTTGGAAAGAATACTAGTCAGGTATGAACTCAGTTTCATTCTTCCTTATAGATTAGCTTATGTTATTTTTCTGTTTTTTAAAGTGGATGATTTGTTAGGATGAAGCTGGAACTGCAGCTATCAAAACAGTGGAGCTTGATGTGGTCCTT</genome_strand>
        <mrna_strand>GTTTCTCTCTCTACA-CT-TGTCTTCATAAAAATATATAAATTTATCTGAA-TTTCTTCCTCTTTTTGTTCTTGATTTTCGTATATATAG--TGTCTCTCTGTATATCTGCAAAAAAAAAGAGAATATCAAAAATTCAAAAAAATAATTACAGCACAATCATTTTCCAGGCAAAGGGAGAAAAGGGGAGGTCCAAAATATACAATCTTGGAACCCCATTACTCCAATTATTCACTTCCTTTTTGGTGTACCCCTTTTTCATATTTGGCCAGCTTTGCATAACCCCTTTTTCTTCTGTGTTTTGAATACCCTTTTGGTTTTTCTTCTCTGTGGAGGGAGAG-TTTTGCTGCATAGATCTCTCTGTAGAGGAGGAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTTTGTGAGAATATTGAGATAGCTGAGGTTAGGAGCTTCAGCATTCCAGTTCCCTTTGTTGAAAGAAGTGGTAACAAGGAGGACTTTGCACAATGTCTAGCTCTGTGAAAACTTTGGATCCGGCATTTCAGGGTGCAGGTCAAAGAGT.......................................................................................................................................................................................AGGGACTGAAATTTGGAGAATTGAGGATTTCCAACCAGTTCCTTTGCCAAAATCTGATTATGGTAAATTTTACTCCGGAGATTCATACATCATCTTGCAG..............................................................................ACAACTTCAGGAAAGGGTGGTGCTTATTTGTATGATATACATTTCTGGCTTGGAAAGGATACTAGTCAG.............................................................................GATGAAGCTGGAACTGCAGCTATCAAAACAGTGGAAACTGATGTGGTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558977" ref_strand="+" ref_description="SGN-E558977 [18402]">
      <seq>accagttcctttgccaaaatctgattatggtaaattttactccggagattcatacatcatcttgcagacaacttcaggaaagggtggtgcttatttgtatgatatacatttctggcttggaaaggatactagtcaggatgaagctggaactgcagctatcaaaacagtggaacttgatgtggtccttggagggcgagcagtacagtatcgagaagtccaaggtcacgaaactgacaaatttttgtcatactttaaaccatgtattatacctctggagggtggtgttgcatctgggttcaagaaaccagaggaggaagaatctgaaacaaggctgtatatttgcaagggtaaacgagtagtacggatgaagcaggttccattctcccggtcctctctaaatcatgatgatgtgttcattctggacactaaagacaagatatatcaattcaatggtgcaaactccaatatccaagaaagggccaaatcattggaagttattcagttcctgaaggaaaaatatcatgaggggacatgtgatgttgcaattgttgatgatggaaatttgcaagctgagtctgattctggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="98430" stop="100749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98730" g_stop="98796" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98797" i_stop="98874" i_length="78">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.034" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98875" g_stop="98943" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="136" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98944" i_stop="99020" i_length="77">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99021" g_stop="99257" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="373" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99258" i_stop="99361" i_length="104">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99362" g_stop="99539" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="551" r_length="178" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99540" i_stop="100411" i_length="872">
            <donor d_prob="0.152" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100412" g_stop="100449" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="589" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E558977" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98730" e_stop="98796"/>
          <exon e_start="98875" e_stop="98943"/>
          <exon e_start="99021" e_stop="99257"/>
          <exon e_start="99362" e_stop="99539"/>
          <exon e_start="100412" e_stop="100449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGTTCCTTTGCCAAAATCTGATTATGGTAAATTTTACTCCGGAGATTCATACATCATCTTGCAGGTACATATATTGATATACAACTTTTTGGTTTATTTTACACCGTGTTATCTTTACGGAATGTTTGCATTTATATGTCAGACAACTTCAGGAAAGGGTGGTGCTTATTTGTATGATATACATTTCTGGCTTGGAAAGAATACTAGTCAGGTATGAACTCAGTTTCATTCTTCCTTATAGATTAGCTTATGTTATTTTTCTGTTTTTTAAAGTGGATGATTTGTTAGGATGAAGCTGGAACTGCAGCTATCAAAACAGTGGAGCTTGATGTGGTCCTTGGAGGGCGAGCAGTACAGTATCGAGAAGTCCAAGGTCACGAAACTGACAAATTTTTGTCATACTTCAAACCATGTATTATACCTCTGGAGGGTGGTGTTGCATCTGGGTTCAAGAAACCAGAGGAGGAAGAATTTGAAACAAAGCTGTATATTTGCAAGGGTAAACGAGTAGTAAGGATGAAGCAGGTATGTCTTAACAACTTGTGTGTGAGATCATCAGGACTTGCGTAGTTTATTTGGATTGTGGTTGAATTGATTATAACCGAGTTGAAAATATTGTCACTTGTCAGGTTCCATTCTCCCGGTCCTCTCTAAATCATGATGATGTGTTCATTCTGGACACTAAAGACAAGATATATCAATTCAATGGTGCAAACTCCAATATCCAAGAAAGGGCCAAAGCATTGGAAGTTATTCAGTTTTTGAAGGAAAAATATCATGAGGGGACGTGTGATGTTGCAATTGTTGGTACGTTGCCATGGAAAATTATAAGAGAAGTGGATCAAGTTGAATATATTTCTGCACTTTCTTTATCTTAATTTAACTTGCGTTGTTTGAATCTGATTGGTAAAAAGGTTATTCTGGTATATCTTGCAACTAATACTTAAGCATTTGGTAGCATTTCAATTTTCAAGTGTACTTTCATATGAAAAGTAACTGCCTAATATCATTCTTAACTTCTGTTAATTTGACCATCAAAATCAAAGTAGGAAGCTGATATCGGGATGGATGGAGCAAGTACTATTTTTATACAATATTTGAAACTTTTCACAAATGTATTCCGAGATACTATGCTTATAAAAATAATGTGTTCCTAGATATTATGTTTAAAACCTTTGGTGGAAAGTTTTCAAATAGTGTTCTCTATGGAATGCTTCTATGCTTTTAAGCATATTATGTGTGCCACAATTGATTTGATTCATGAGAACAATGAATAAAATATTTCAAAATGTGCAAAAGATGTGATTAATAAATTTGGGTGAATTTTGTTTTACATGAATGCTTCTTGTGTGAAAGAACAATTTTTTATATCTTTGCTAATAGATATTGTGGGAGAGAATCATTCGATTCAACTAAAAGGCGGAACTAAACTGCTTACACCCATGAAAAAGATCTGATCAACCAAGATAGGGAACAAACGTTAAAACTTAGAAAGCTATAGGGGGAATAATCTATCATTATGATGTCAACACCATGCAGATTGGGTTGGATAGAGTCAATATGTTCGTTTATCCATCATGTGTGGCGCCTAACATATCACTCTTTTGTTACTCCCTAAATTTTTACGAAATAACTCTGGGCTTGACTACTCCTTCTTACTTCTCTTATGTATATCTCAGATGATGGAAATTTGCAAGCTGAGTCTGATTCTGGATCA</genome_strand>
        <mrna_strand>ACCAGTTCCTTTGCCAAAATCTGATTATGGTAAATTTTACTCCGGAGATTCATACATCATCTTGCAG..............................................................................ACAACTTCAGGAAAGGGTGGTGCTTATTTGTATGATATACATTTCTGGCTTGGAAAGGATACTAGTCAG.............................................................................GATGAAGCTGGAACTGCAGCTATCAAAACAGTGGAACTTGATGTGGTCCTTGGAGGGCGAGCAGTACAGTATCGAGAAGTCCAAGGTCACGAAACTGACAAATTTTTGTCATACTTTAAACCATGTATTATACCTCTGGAGGGTGGTGTTGCATCTGGGTTCAAGAAACCAGAGGAGGAAGAATCTGAAACAAGGCTGTATATTTGCAAGGGTAAACGAGTAGTACGGATGAAGCAG........................................................................................................GTTCCATTCTCCCGGTCCTCTCTAAATCATGATGATGTGTTCATTCTGGACACTAAAGACAAGATATATCAATTCAATGGTGCAAACTCCAATATCCAAGAAAGGGCCAAATCATTGGAAGTTATTCAGTTCCTGAAGGAAAAATATCATGAGGGGACATGTGATGTTGCAATTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGGAAATTTGCAAGCTGAGTCTGATTCTGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305852" ref_strand="+" ref_description="SGN-E305852 [cLEX-14-J10]">
      <seq>gagtagtaaggatgaagcaggttccattctcccggtcctctctaaatcatgatgatgtgttcattctggacactaaagacaagatatatcaattcaatggtgcaaactccaatatccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggtcagaaccagagcaggatgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaagcgaagagaggcctatctatcggatgaagaatttatgtctgtacttggtatgaagaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaaaggaaaactgatctcttctagatcctgcatcggagaaaccaaatggcctgttgctatcttgttgttgcaattctcgacatccgttcccatgtttcttgccagagcaacctacttttataggtacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="98938" stop="110047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99238" g_stop="99257" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99258" i_stop="99361" i_length="104">
            <donor d_prob="0.946" d_score="0.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99362" g_stop="99461" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="120" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99462" i_stop="108876" i_length="9415">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108877" g_stop="109049" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="293" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109528" g_stop="109747" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="513" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E305852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99238" e_stop="99257"/>
          <exon e_start="99362" e_stop="99461"/>
          <exon e_start="108877" e_stop="109049"/>
          <exon e_start="109528" e_stop="109747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAGTAAGGATGAAGCAGGTATGTCTTAACAACTTGTGTGTGAGATCATCAGGACTTGCGTAGTTTATTTGGATTGTGGTTGAATTGATTATAACCGAGTTGAAAATATTGTCACTTGTCAGGTTCCATTCTCCCGGTCCTCTCTAAATCATGATGATGTGTTCATTCTGGACACTAAAGACAAGATATATCAATTCAATGGTGCAAACTCCAATATCCAAGAAAGGGCCAAAGCATTGGAAGTTATTCAGTTTTTGAAGGAAAAATATCATGAGGGGACGTGTGATGTTGCAATTGTTGGTACGTTGCCATGGAAAATTATAAGAGAAGTGGATCAAGTTGAATATATTTCTGCACTTTCTTTATCTTAATTTAACTTGCGTTGTTTGAATCTGATTGGTAAAAAGGTTATTCTGGTATATCTTGCAACTAATACTTAAGCATTTGGTAGCATTTCAATTTTCAAGTGTACTTTCATATGAAAAGTAACTGCCTAATATCATTCTTAACTTCTGTTAATTTGACCATCAAAATCAAAGTAGGAAGCTGATATCGGGATGGATGGAGCAAGTACTATTTTTATACAATATTTGAAACTTTTCACAAATGTATTCCGAGATACTATGCTTATAAAAATAATGTGTTCCTAGATATTATGTTTAAAACCTTTGGTGGAAAGTTTTCAAATAGTGTTCTCTATGGAATGCTTCTATGCTTTTAAGCATATTATGTGTGCCACAATTGATTTGATTCATGAGAACAATGAATAAAATATTTCAAAATGTGCAAAAGATGTGATTAATAAATTTGGGTGAATTTTGTTTTACATGAATGCTTCTTGTGTGAAAGAACAATTTTTTATATCTTTGCTAATAGATATTGTGGGAGAGAATCATTCGATTCAACTAAAAGGCGGAACTAAACTGCTTACACCCATGAAAAAGATCTGATCAACCAAGATAGGGAACAAACGTTAAAACTTAGAAAGCTATAGGGGGAATAATCTATCATTATGATGTCAACACCATGCAGATTGGGTTGGATAGAGTCAATATGTTCGTTTATCCATCATGTGTGGCGCCTAACATATCACTCTTTTGTTACTCCCTAAATTTTTACGAAATAACTCTGGGCTTGACTACTCCTTCTTACTTCTCTTATGTATATCTCAGATGATGGAAATTTGCAAGCTGAGTCTGATTCTGGATCATTCTGGGTTTTGTTTGGTGGATTTGCTCCAATTAGCAAAAAGGTTATTACTGAAGATGATATTGTTCCCGAGAAGACACCTCCTAAACTTAGCAGGTATTGTTGCCTCCTTTTATCTTATGTTTGTTATTAGGTTGGTGACTCAATTGTAACTTGTTAGTAATTCATATTGGCAACTTTGAGTCCCCTTTTTTGGGGGGATAGTCAAAGGACATTTTTTAGTTCTGCACGCTACATGTGTGGCTTAGTGATCAATGATGTGGGTTGAGACCCATGAGGTCTCAAGTTCAAATCCCAGTGGAAACAAAAATACTAGGTGATTTATTCCAATGTATCCAACCCTTAGTTGACAATGTTATGTGATACTCGTGGTGGTAGGAGGTAGCTGTACCCTATGAAGTTAATCAGTTGAGGCGTAGGAAAGCAGAACTTTGAGTTCCTTGAGTGATCCATAGTTTATCTAGGAGCAAACTATTTATGATTTATCTTGTTAGATTTAGCCAGTGTTGTGAATGGCGAGCGCCTCATCGCCAAAGGCGACATACAAAAGCGACCCATGGCGATCTAATGGCGACAAAAATGGCCCGCCTTTTTTATTTAATTTTTCTTTAAAGATTTGACTTAACGATATTAGTCAAAATTAGGTTTTTTTTTTCTATTTTCCAAATTTGCTGCTGCGCGACTCCTTTTTAGTATCTACTATTGGTTTTTGAATTGAATATTTGCTAATATGTGTTATTACTATTAAGATTTTGGATAAAATATGCAATTAAATATTTTTAATTTTTGGTATTCATTGGCGCCTTGATTCAAAAAGGCAAGCGCCTCGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTTTCGCCATCCAAAACACTGGATTTAGCATGTTCTGGATTGTTGTCTCTTACTGATATTATAAATGTTCTTATTTGAGGGAAATGGTTTTAGATTTTCAATGATGCTAAGAGGTAAAGATTAGTCATACTATAGAAGTAGTATACACCTAGCCTGGATCCTCGGGGCTGATTACAAACCGGACGAAGTGAAAGAACTATGAGATGAGATCATTTGCGTTCAAATTCAATTGGTTCTTGCATATTTGAAGTGATCGAAGCTAGCTGGTTACTGGTCGAGTTTGGGATAATAGTTATCAAAAGAAGAATCACTAGAACCACATTTCCTTGATCTTGGTATATGTTGTTAGACACAAAGAAGAAAAGAAAGAAGATAAAATTTGAGAGATGTGCCTTGTGTTCAGGCCCTGAAGACCGGGGATGACATTGGAGGAATTACTTTTCTGATTTGCATCCCTTATCAACTCATGGGCATGTGAAAACTGAATAACTTTCATTGATGAAGTTTGACAAGTTTATGGTTGATGTATTCTTGCACGGTGCTGGTTGCAATCATTGCTGGACATCTCCTAGAGAATATCCCTGTTGGAAGATTTGAAGAGGTTGTTTTGTTGGGATATTGTGTGGGGGGTGGGAGGGATGTAATGGTAGAATGTCCGAGAGGAGCTTGAATGTTTTGGACTTGGGATCAGTGAATACATAAATATTGGCCGGAAAAATAAGCAAGGAAATGAAGATGCATGATGGGATATTTGGAATTTTGTTTTGTCGGGTGCATGTCGTGTATTATCAGCTCATGTTCTATCTATGGTTTATGATGATGCATATCAAAATTATTTAACATCCTTGATTGACCTTGAACTGCTGAACATGACTTCTTCATGGTAGAAGATCTTTACACTGAATCGCTCTAATTAATTCTCTCGTGTTTTCCATTTCTATGTCTATTGCAATGCCCTTATGCTTGCTACTTTCTCATCACTGAATTTTTTATATCAACCTTATGCTGGTGTTGCTGCTGAAGCTGATTGCTTCCTCATTTTGCAGCATCACTGATGGTCAAGTCAGTCCTGTAGATGGTGAACTTTCAAAGTCTAGCTTGGAAAACAATAAATGCTATCTTTTGGATTGCGGTGCTGAGGTGTTTGTTTGGATTGGTCGTGTAACTCAACTGGAGGAGAGGAAAGCTGCCATTCAAACTGCAGAGGTAGAATTGTTTAGTCCACATGTTAGTTATTTGATACGACTTTTAGTTGCTAAATGGCTTGTGATATCCCCAGGAATATCTTGTCTCTGAAAATAGACCCAAGGCAACGCGTGTAACCCGGGTTATTCAAGGTTATGAAACCCATTCATTCAAGTCCAACTTTGACTCTTGGCCATCAGGATCTGCACCTGCCCCTGAAGAGGGAAGAGGAAAAGTAGCAGGTAAATTTTTTCTCTACTTGTGAAGTGTAATGTTGTTTGGTGCCAGTAGTTCTAAGTTCTCGCATCTTTACAGCTTTGCTGAAGCAGCAAGGTGCTGGCGTCAAAGGTGCCAGCAAAAGTGCTCCTGTAATTGAGGAAGTGCCTCCGTTGCTTGAAGAGGGTGGAAAATTAGAGGTCTGATCAGCACTGTTATTTCCATTTCTTCACCAATGTGTGTTGATATAACCAGCTTGTTTTACTAAAAATATGAGATTTATTAGGTATGGCGCATAAATGGTAATGCAAAGACACCTGTCCCAAAAGAAGATATTGGTAAATTCTACAGTGGAGATTGCTATGTGGTTCTCTACAACTACCATTCTCATGAAAGGAGAGACGATTACTATCTATGTTGGTGGATTGGAAAGGATAGTATTGAGGTAATGTGGATTGTCACTGCAATTCAAGGGTCCATGCATTTCTTCCCATAAATTTTATTTGATAATTAAGTTGATATGCCATGCATCTGAGAATTATAGTTATCATTTGTTTTAACTTGCTTGTGAGCTAGCCCTTCATGGACCTGGTGAAAAAAGGAAATGAAACCAAAAAATGTAATGCAAAGGAAACGAAACAAAAAAATATAATGGTACATCTAAGAACTTCAATTGTGTAAATGATTCTCATATGTTTGTACTTGTGAACTGTTCTTTAATTTGATTAGCGTGGAGATAGTTATAAAAGAAAGTCTTACCTAAAAAAGGATTTATTACACTAGAGTGAGGTAGATGTGATTTTAATAATAGATAAAGTGCTTTAAAGTGAGGTTTGTAGTAAGAATGCACTTCTAGGAATAAGTAATTTACTGGAATAATACTATTTGTTTTAGTTTGTAATGGTAGGAGATTCTGATCTTCTCCACCAGGGGAAGGGGTCAAAGTGAAATTGAAAGAACTAAAAAAACCAGCCATGGCTTTCATCTAGTACCCCCCTTTCTTAGTTTGTGTACCATCTTTCTGCTTTCTTGGAGATAGGTAGTGAGTCTAAAGGACTTATCCAGTTTCCATATGTGATAAAGTTGTGTCTTGATACAGGAGGACCAAATCACGGCTGCTCGATTGGCCAGTACAATGTGCAATTCACTCAAAGGAAGACCTGTGCTGGTATTACTTGTCACATATTGGTTGTCTCTCTCTAAAGTTGGCAAGGTTTTAATTCGACACTAAACATTGTCCAGGGTCGAGTGTTTCAAGGGAAAGAACCTCCACAGTTTGTTGCAATCTTCCAGCCCATGTTGGTCCTTAAGGTACGTCGTCATACAGCATAATACAGGCTGCTGTTGCTGCAGTACTTGATTTACATCATCAATAGCCCTGATGAATTTTGATTTTCCTCAGGGTGGTTTGAGCACTGGCTACAAAAACTATATTGCTGACAAAGGCTTGAATGATGAAACCTATACTGCTGATTCAGTTGCACTTATTCGGTTATCTGGAACTTCTGTGCATAATAACAAAGCGGTTCAAGTGGATGCTGTAAGCTTATGACCTTCAACTTTTTCTTCTTGTTTTGGTCTATAAGGTTGCAGATTATCTTAATTGTTTTAGTATTTGAAGCAGATAATATCCTTTCTTCCTACAGTACCTGTTCTCCTATAATTATCTTGTTGATGTTACTTCATATGATATGCCAACCTGTTTTTAGATAGATGAGTAGCTACTCCCCAGGTTGATAACTTGATATAATCTTTCTTCGAGTCTTCACATCTCTTTTTCACATCTGGTATTAGTCCTCAGTATCCACCCCGTTGTTCTTGAGCTTATTTTGCTTCAATACTAAATAATGCCTTCAAGGGCAAATTACGGATTTTCTGCAACTAGTGGTTCTCTTGATGTACAAGTGTTTTTTATAATCCGTAAAAGGAACCAGTAATGCCAGAATGATTCTTACATGGACATTTATGTTCTCAAACCAGAACAAAGAACTCTTTACGAACATCAGACTGAATATCAGTGTAGTACAGCTACAAAGCCTTAGTCCCAATCGTTGACGTCTACTATGTAAATCTTTTGTATTTTTTGCAGTTATGATATCATTGAATTATACTTGATTGTGTTGGTAATGATGAGAGCCCATTAATTCTAATTCAGACAACTTGTCTGGCTTTGTCGATGACTGTATTCTGTGATTAGTGAAAGTTGCAGTTCTCTTAGTATACAAATTACTGTGAACTTATAAAAATAAAATTTTCTACGGGGATTGCTTATTTTTATTTTTTTCTGTGTCGGAACTGTCAGGTGCCAAGTTCACTGAACTCTAATGAGTGTTTTCTTCTGCAATCTGGCTCTTCATTATTCAGTTGGCATGGTAACCAGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAGGTGAGATGTTTATTGAAACTGGAAAGACTTCTCACCTTTTTCCCATCATTCTCTTTATGACTAGGAAGGGTTCAATCTTTTAAGTACTCCGGGAGAAATTGCTTATGGTTTTGCTTTGAAATATTCAAAGACTTGAGGTGAATTTAAGTTTCTTTTCTCATAGGCAGATCCCCACTGAGTTAATGTGAGTTCCGCTAGATATAGAATAAATTACCATGAAATGAAGTGTATAGTTGTCTACAGTATATGTGAGTTTTGTATGGTGAAAGTTGCTTGAAGTTGTTATCTGGCAATCCTCATCATTTGAGTGCTAGCATGGAGGGTAATAATCTACTCCAGTTGGACAAAATGTCACGTTTTATCCTGCTTAAAATTTTGGTAATTTTTTTTTTGGCAAATGTCTCGAGCAGATTCCACTCAGTTCATAAGAGTTCACCTTGTGTGACTGGTTGTGCTTGTATGATGGTATCATTATGTCTGTGCTTGATGAAGGATGCATCTATTTTCATTAGTCATTAATAAATGTCTCCATATGCATGAAACATTTCTTTTACTTTGATGCTGTAGAACGATTTTAAATGCACTTTGTAAGAAAGCGAAACCATCTTAAAATGCACTAATTGAGAGATGATGCAGTGAAATTTCATAAACTTACCTTGATCAAATTACAGTCGTCAGGTTGTTATACAGTAACATCGTGACTGAATAACTATTTGAAATATGAAAAATGCAAGCATAGCCTGCATCTGTTAAGATGTATATCCACGGTGGTGAAATTTTAGCAAAATATACAGCATTATAGCTAGAAATGATTGCATGGACACCTCTTCATCTTCATTGGTTTTGACTAGTGTTTCAGCTTTTCTTTTTTACCTGGAATGAATAATGAAATAATCAAGAAAGTGGCTACCAACCTCAAATTTCATATGATTGTTCTTGCCGCTGACTTTTCGTTGCAATCACAAAAGGCTGAAGTTTCATTACTTAGTTTCGTGGATATTAAGCGTATACTTTTATGATTTCTAGCTTGTAGCAGATAGCATAGCTTTGATTTGTGTGTTGTACCGGTTGTGTAGTTTTAAGTATCCACATGCATATTGACATCCACTCTGAAATTGTGAAGAAGATATCCCCAATCGATATGCCTCATGTTTGTGTATGTCCTGCACTGGACTAATGTACTTAATTTTTTGTGCAACTTCAGCCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAGGTATGCCTATTATTCTATAATTCTTTTGATTTTTTATTAGCTTTCATCTGCTAACGATCTTTTTAATGATTTGCATGTTATCAACATTGATATCCAGGAAAATTTGAGGTAATGTTCTACAGTACAAGTGTAAAATTTCTCACTTTCTGCTCCATCCTTTTACTGTGTTTTTAAAATTTGTTCTCTACTCATTTGATAGGTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGTGTAAGTGACTAAACCTTTAGTCTGATTGTCATTATGAGTCCTCCTGGCATGAACTCGTAGACACTATGTTGATGCCATAGAAGAGTTCCATTAGTCATCCTTTATTTAAACATTTCTTTTATGATTTCGGAGAGGATGGGGAGATGAGGTGCAATTTTTACATGGAACTGATAAGTTGTACAGTATTGTATTTGCATGCTGAACTCAATTACCATTTCAGCTTTGATGACTAGACCCTGCAGTATTTGTATATGTGTTTTTGAACAACTGATAACGATAGACTGATGACATATTTGGATACCTGTTTCTGATCCTTAAACCAAAATCATGCAGTTATTATAAATCATCTTGTACAAGATACTGAATGATCTCTCTTAGAGAAGATCTCACACAATAGCTTTGAAGTAGGGACTAAACAAGCATATTGAAGCTTCTTCTTTCTCACTGTTGAAGGCAAAGTTACTTTCCATGAGGGTGAAACTTTTAAATAGTCATTTTAACTACAATATATTTGTGGTTGTAACTTATTGGTTCATCAATTATCTCACCTCTAATAGTTCTATAATCTGTATATTGCACTAACCTTCCTATTTAACCAGGCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAGGTAATTTCTTGACTTCATTTAAGCAATGATGGGTTTATGCCCAATTTTTTTCGTATTTGCAAATGTTTTCTCATTTCCATTTCTGTCATTGTAAGACTACTGAAATCTGTGAATCATGTAATTTATGATTCCTTTCAGAGACCAATGTATAGCATATGTGACTACTTTTTCCTGTCTAAGCTGGCCATTGTAGAATGAAGAAAATCTTTTTGGTTGTGCAAGTGTCATATCTCTGTGTGGGTTTTCTTTAGAATCATAATATAGAGCCCCCTCCCTCTCCCCTTTGGGGTGGTTAAATAGAAAAACTAAAAGAAAGTGATATTAGAAAATAAAGACCGTGGAATAGGAGAACGACAATTGCCAAAAAATGCAATGGATATTTGGGTACCAAAATGTTACAGATTATGAGTGTGTACATAAGTAAAATATTCTGTGTAGATATCATGGTTATTAAGCAGTAGTTGTTAACGGTTGATTCTGTCATTATCAATCAAATGTGGAATGCGATAAATCTCAGATGTTCAAAAAATCCCAATGTGCTAACAGCCTGCTCTATATTTCAGAATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATA</genome_strand>
        <mrna_strand>GAGTAGTAAGGATGAAGCAG........................................................................................................GTTCCATTCTCCCGGTCCTCTCTAAATCATGATGATGTGTTCATTCTGGACACTAAAGACAAGATATATCAATTCAATGGTGCAAACTCCAATATCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246416" ref_strand="+" ref_description="SGN-E246416 [cLEF-52-E8]">
      <seq>ccattctcccggtcctctctaaatcatgatgatgtgttcattctggacactaaagacaagatatatcaattcaatggtgcaaactccaatatccaagaaagggccaaagcattggaagttattcagtttttgaaggaaaaatatcatgaggggacgtgtgatgttgcaattgttgatgatggaaatttgcaagctgagtctgattctggatcattctgggttttgtttggtggatttgctccaattagcaaaaaggttattactgaagatgatattgttcccgagaagacacctcctaaacttagcagcatcactgatggtcaagtcagtcctgtagatggtgaactttcaaagtctagcttggaaaacaataaatgctatcttttggattgcggtgctgaggtgtttgtttggattggtcgtgtaactcaactggaggagaggaaagctgccattcaaactgcagaggaatatcttgtctctgaaaatagacccaaggcaacgcgtgtaacccgggttattcaaggttatgaaacccattcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="99065" stop="102961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99365" g_stop="99539" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99540" i_stop="100411" i_length="872">
            <donor d_prob="0.152" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100412" g_stop="100544" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="308" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100545" i_stop="102350" i_length="1806">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102351" g_stop="102510" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="468" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102511" i_stop="102583" i_length="73">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102584" g_stop="102661" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="546" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E246416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99365" e_stop="99539"/>
          <exon e_start="100412" e_stop="100544"/>
          <exon e_start="102351" e_stop="102510"/>
          <exon e_start="102584" e_stop="102661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCTCCCGGTCCTCTCTAAATCATGATGATGTGTTCATTCTGGACACTAAAGACAAGATATATCAATTCAATGGTGCAAACTCCAATATCCAAGAAAGGGCCAAAGCATTGGAAGTTATTCAGTTTTTGAAGGAAAAATATCATGAGGGGACGTGTGATGTTGCAATTGTTGGTACGTTGCCATGGAAAATTATAAGAGAAGTGGATCAAGTTGAATATATTTCTGCACTTTCTTTATCTTAATTTAACTTGCGTTGTTTGAATCTGATTGGTAAAAAGGTTATTCTGGTATATCTTGCAACTAATACTTAAGCATTTGGTAGCATTTCAATTTTCAAGTGTACTTTCATATGAAAAGTAACTGCCTAATATCATTCTTAACTTCTGTTAATTTGACCATCAAAATCAAAGTAGGAAGCTGATATCGGGATGGATGGAGCAAGTACTATTTTTATACAATATTTGAAACTTTTCACAAATGTATTCCGAGATACTATGCTTATAAAAATAATGTGTTCCTAGATATTATGTTTAAAACCTTTGGTGGAAAGTTTTCAAATAGTGTTCTCTATGGAATGCTTCTATGCTTTTAAGCATATTATGTGTGCCACAATTGATTTGATTCATGAGAACAATGAATAAAATATTTCAAAATGTGCAAAAGATGTGATTAATAAATTTGGGTGAATTTTGTTTTACATGAATGCTTCTTGTGTGAAAGAACAATTTTTTATATCTTTGCTAATAGATATTGTGGGAGAGAATCATTCGATTCAACTAAAAGGCGGAACTAAACTGCTTACACCCATGAAAAAGATCTGATCAACCAAGATAGGGAACAAACGTTAAAACTTAGAAAGCTATAGGGGGAATAATCTATCATTATGATGTCAACACCATGCAGATTGGGTTGGATAGAGTCAATATGTTCGTTTATCCATCATGTGTGGCGCCTAACATATCACTCTTTTGTTACTCCCTAAATTTTTACGAAATAACTCTGGGCTTGACTACTCCTTCTTACTTCTCTTATGTATATCTCAGATGATGGAAATTTGCAAGCTGAGTCTGATTCTGGATCATTCTGGGTTTTGTTTGGTGGATTTGCTCCAATTAGCAAAAAGGTTATTACTGAAGATGATATTGTTCCCGAGAAGACACCTCCTAAACTTAGCAGGTATTGTTGCCTCCTTTTATCTTATGTTTGTTATTAGGTTGGTGACTCAATTGTAACTTGTTAGTAATTCATATTGGCAACTTTGAGTCCCCTTTTTTGGGGGGATAGTCAAAGGACATTTTTTAGTTCTGCACGCTACATGTGTGGCTTAGTGATCAATGATGTGGGTTGAGACCCATGAGGTCTCAAGTTCAAATCCCAGTGGAAACAAAAATACTAGGTGATTTATTCCAATGTATCCAACCCTTAGTTGACAATGTTATGTGATACTCGTGGTGGTAGGAGGTAGCTGTACCCTATGAAGTTAATCAGTTGAGGCGTAGGAAAGCAGAACTTTGAGTTCCTTGAGTGATCCATAGTTTATCTAGGAGCAAACTATTTATGATTTATCTTGTTAGATTTAGCCAGTGTTGTGAATGGCGAGCGCCTCATCGCCAAAGGCGACATACAAAAGCGACCCATGGCGATCTAATGGCGACAAAAATGGCCCGCCTTTTTTATTTAATTTTTCTTTAAAGATTTGACTTAACGATATTAGTCAAAATTAGGTTTTTTTTTTCTATTTTCCAAATTTGCTGCTGCGCGACTCCTTTTTAGTATCTACTATTGGTTTTTGAATTGAATATTTGCTAATATGTGTTATTACTATTAAGATTTTGGATAAAATATGCAATTAAATATTTTTAATTTTTGGTATTCATTGGCGCCTTGATTCAAAAAGGCAAGCGCCTCGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTTTCGCCATCCAAAACACTGGATTTAGCATGTTCTGGATTGTTGTCTCTTACTGATATTATAAATGTTCTTATTTGAGGGAAATGGTTTTAGATTTTCAATGATGCTAAGAGGTAAAGATTAGTCATACTATAGAAGTAGTATACACCTAGCCTGGATCCTCGGGGCTGATTACAAACCGGACGAAGTGAAAGAACTATGAGATGAGATCATTTGCGTTCAAATTCAATTGGTTCTTGCATATTTGAAGTGATCGAAGCTAGCTGGTTACTGGTCGAGTTTGGGATAATAGTTATCAAAAGAAGAATCACTAGAACCACATTTCCTTGATCTTGGTATATGTTGTTAGACACAAAGAAGAAAAGAAAGAAGATAAAATTTGAGAGATGTGCCTTGTGTTCAGGCCCTGAAGACCGGGGATGACATTGGAGGAATTACTTTTCTGATTTGCATCCCTTATCAACTCATGGGCATGTGAAAACTGAATAACTTTCATTGATGAAGTTTGACAAGTTTATGGTTGATGTATTCTTGCACGGTGCTGGTTGCAATCATTGCTGGACATCTCCTAGAGAATATCCCTGTTGGAAGATTTGAAGAGGTTGTTTTGTTGGGATATTGTGTGGGGGGTGGGAGGGATGTAATGGTAGAATGTCCGAGAGGAGCTTGAATGTTTTGGACTTGGGATCAGTGAATACATAAATATTGGCCGGAAAAATAAGCAAGGAAATGAAGATGCATGATGGGATATTTGGAATTTTGTTTTGTCGGGTGCATGTCGTGTATTATCAGCTCATGTTCTATCTATGGTTTATGATGATGCATATCAAAATTATTTAACATCCTTGATTGACCTTGAACTGCTGAACATGACTTCTTCATGGTAGAAGATCTTTACACTGAATCGCTCTAATTAATTCTCTCGTGTTTTCCATTTCTATGTCTATTGCAATGCCCTTATGCTTGCTACTTTCTCATCACTGAATTTTTTATATCAACCTTATGCTGGTGTTGCTGCTGAAGCTGATTGCTTCCTCATTTTGCAGCATCACTGATGGTCAAGTCAGTCCTGTAGATGGTGAACTTTCAAAGTCTAGCTTGGAAAACAATAAATGCTATCTTTTGGATTGCGGTGCTGAGGTGTTTGTTTGGATTGGTCGTGTAACTCAACTGGAGGAGAGGAAAGCTGCCATTCAAACTGCAGAGGTAGAATTGTTTAGTCCACATGTTAGTTATTTGATACGACTTTTAGTTGCTAAATGGCTTGTGATATCCCCAGGAATATCTTGTCTCTGAAAATAGACCCAAGGCAACGCGTGTAACCCGGGTTATTCAAGGTTATGAAACCCATTCATTC</genome_strand>
        <mrna_strand>CCATTCTCCCGGTCCTCTCTAAATCATGATGATGTGTTCATTCTGGACACTAAAGACAAGATATATCAATTCAATGGTGCAAACTCCAATATCCAAGAAAGGGCCAAAGCATTGGAAGTTATTCAGTTTTTGAAGGAAAAATATCATGAGGGGACGTGTGATGTTGCAATTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGGAAATTTGCAAGCTGAGTCTGATTCTGGATCATTCTGGGTTTTGTTTGGTGGATTTGCTCCAATTAGCAAAAAGGTTATTACTGAAGATGATATTGTTCCCGAGAAGACACCTCCTAAACTTAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCACTGATGGTCAAGTCAGTCCTGTAGATGGTGAACTTTCAAAGTCTAGCTTGGAAAACAATAAATGCTATCTTTTGGATTGCGGTGCTGAGGTGTTTGTTTGGATTGGTCGTGTAACTCAACTGGAGGAGAGGAAAGCTGCCATTCAAACTGCAGAG.........................................................................GAATATCTTGTCTCTGAAAATAGACCCAAGGCAACGCGTGTAACCCGGGTTATTCAAGGTTATGAAACCCATTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315421" ref_strand="+" ref_description="SGN-E315421 [cTOA-22-G10]">
      <seq>tctctaaatcatgatgatgtgttcattctggacactaaagacaagatatatcaattcaatggtgcaaactccaatatccaagaaagggccaaagcattggaagttattcagtttttgaaggaaaaatatcatgaggggacgtgtgatgttgcaattgttgatgatggaaatttgcaagctgagtctgattctggatcattctgggttttgtttggtggatttgctccaattagcaaaaaggttattactgaagatgatattgttcccgagaagacacctcctaaacttagcagcatcactgatggtcaagtcagtcctgtagatggtgaactttcaaagtctagcttggaaaacaataaatgctatcttttggattgcggtgctgaggtgtttgtttggattggtcgtgtaactcaactggaggagaggaaagctgccattcaaactgcagaggaatatcttgtctctgaaaatagacccaaggcaacgcgtgtaacccgggttattcaaggttatgaaacccattcattcaagtccaactttgactcttggccatcaagatctgcacctgcccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="99080" stop="103008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99380" g_stop="99539" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99540" i_stop="100411" i_length="872">
            <donor d_prob="0.152" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100412" g_stop="100544" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="293" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100545" i_stop="102350" i_length="1806">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102351" g_stop="102510" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="453" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102511" i_stop="102583" i_length="73">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102584" g_stop="102708" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="578" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E315421" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99380" e_stop="99539"/>
          <exon e_start="100412" e_stop="100544"/>
          <exon e_start="102351" e_stop="102510"/>
          <exon e_start="102584" e_stop="102708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTAAATCATGATGATGTGTTCATTCTGGACACTAAAGACAAGATATATCAATTCAATGGTGCAAACTCCAATATCCAAGAAAGGGCCAAAGCATTGGAAGTTATTCAGTTTTTGAAGGAAAAATATCATGAGGGGACGTGTGATGTTGCAATTGTTGGTACGTTGCCATGGAAAATTATAAGAGAAGTGGATCAAGTTGAATATATTTCTGCACTTTCTTTATCTTAATTTAACTTGCGTTGTTTGAATCTGATTGGTAAAAAGGTTATTCTGGTATATCTTGCAACTAATACTTAAGCATTTGGTAGCATTTCAATTTTCAAGTGTACTTTCATATGAAAAGTAACTGCCTAATATCATTCTTAACTTCTGTTAATTTGACCATCAAAATCAAAGTAGGAAGCTGATATCGGGATGGATGGAGCAAGTACTATTTTTATACAATATTTGAAACTTTTCACAAATGTATTCCGAGATACTATGCTTATAAAAATAATGTGTTCCTAGATATTATGTTTAAAACCTTTGGTGGAAAGTTTTCAAATAGTGTTCTCTATGGAATGCTTCTATGCTTTTAAGCATATTATGTGTGCCACAATTGATTTGATTCATGAGAACAATGAATAAAATATTTCAAAATGTGCAAAAGATGTGATTAATAAATTTGGGTGAATTTTGTTTTACATGAATGCTTCTTGTGTGAAAGAACAATTTTTTATATCTTTGCTAATAGATATTGTGGGAGAGAATCATTCGATTCAACTAAAAGGCGGAACTAAACTGCTTACACCCATGAAAAAGATCTGATCAACCAAGATAGGGAACAAACGTTAAAACTTAGAAAGCTATAGGGGGAATAATCTATCATTATGATGTCAACACCATGCAGATTGGGTTGGATAGAGTCAATATGTTCGTTTATCCATCATGTGTGGCGCCTAACATATCACTCTTTTGTTACTCCCTAAATTTTTACGAAATAACTCTGGGCTTGACTACTCCTTCTTACTTCTCTTATGTATATCTCAGATGATGGAAATTTGCAAGCTGAGTCTGATTCTGGATCATTCTGGGTTTTGTTTGGTGGATTTGCTCCAATTAGCAAAAAGGTTATTACTGAAGATGATATTGTTCCCGAGAAGACACCTCCTAAACTTAGCAGGTATTGTTGCCTCCTTTTATCTTATGTTTGTTATTAGGTTGGTGACTCAATTGTAACTTGTTAGTAATTCATATTGGCAACTTTGAGTCCCCTTTTTTGGGGGGATAGTCAAAGGACATTTTTTAGTTCTGCACGCTACATGTGTGGCTTAGTGATCAATGATGTGGGTTGAGACCCATGAGGTCTCAAGTTCAAATCCCAGTGGAAACAAAAATACTAGGTGATTTATTCCAATGTATCCAACCCTTAGTTGACAATGTTATGTGATACTCGTGGTGGTAGGAGGTAGCTGTACCCTATGAAGTTAATCAGTTGAGGCGTAGGAAAGCAGAACTTTGAGTTCCTTGAGTGATCCATAGTTTATCTAGGAGCAAACTATTTATGATTTATCTTGTTAGATTTAGCCAGTGTTGTGAATGGCGAGCGCCTCATCGCCAAAGGCGACATACAAAAGCGACCCATGGCGATCTAATGGCGACAAAAATGGCCCGCCTTTTTTATTTAATTTTTCTTTAAAGATTTGACTTAACGATATTAGTCAAAATTAGGTTTTTTTTTTCTATTTTCCAAATTTGCTGCTGCGCGACTCCTTTTTAGTATCTACTATTGGTTTTTGAATTGAATATTTGCTAATATGTGTTATTACTATTAAGATTTTGGATAAAATATGCAATTAAATATTTTTAATTTTTGGTATTCATTGGCGCCTTGATTCAAAAAGGCAAGCGCCTCGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTTTCGCCATCCAAAACACTGGATTTAGCATGTTCTGGATTGTTGTCTCTTACTGATATTATAAATGTTCTTATTTGAGGGAAATGGTTTTAGATTTTCAATGATGCTAAGAGGTAAAGATTAGTCATACTATAGAAGTAGTATACACCTAGCCTGGATCCTCGGGGCTGATTACAAACCGGACGAAGTGAAAGAACTATGAGATGAGATCATTTGCGTTCAAATTCAATTGGTTCTTGCATATTTGAAGTGATCGAAGCTAGCTGGTTACTGGTCGAGTTTGGGATAATAGTTATCAAAAGAAGAATCACTAGAACCACATTTCCTTGATCTTGGTATATGTTGTTAGACACAAAGAAGAAAAGAAAGAAGATAAAATTTGAGAGATGTGCCTTGTGTTCAGGCCCTGAAGACCGGGGATGACATTGGAGGAATTACTTTTCTGATTTGCATCCCTTATCAACTCATGGGCATGTGAAAACTGAATAACTTTCATTGATGAAGTTTGACAAGTTTATGGTTGATGTATTCTTGCACGGTGCTGGTTGCAATCATTGCTGGACATCTCCTAGAGAATATCCCTGTTGGAAGATTTGAAGAGGTTGTTTTGTTGGGATATTGTGTGGGGGGTGGGAGGGATGTAATGGTAGAATGTCCGAGAGGAGCTTGAATGTTTTGGACTTGGGATCAGTGAATACATAAATATTGGCCGGAAAAATAAGCAAGGAAATGAAGATGCATGATGGGATATTTGGAATTTTGTTTTGTCGGGTGCATGTCGTGTATTATCAGCTCATGTTCTATCTATGGTTTATGATGATGCATATCAAAATTATTTAACATCCTTGATTGACCTTGAACTGCTGAACATGACTTCTTCATGGTAGAAGATCTTTACACTGAATCGCTCTAATTAATTCTCTCGTGTTTTCCATTTCTATGTCTATTGCAATGCCCTTATGCTTGCTACTTTCTCATCACTGAATTTTTTATATCAACCTTATGCTGGTGTTGCTGCTGAAGCTGATTGCTTCCTCATTTTGCAGCATCACTGATGGTCAAGTCAGTCCTGTAGATGGTGAACTTTCAAAGTCTAGCTTGGAAAACAATAAATGCTATCTTTTGGATTGCGGTGCTGAGGTGTTTGTTTGGATTGGTCGTGTAACTCAACTGGAGGAGAGGAAAGCTGCCATTCAAACTGCAGAGGTAGAATTGTTTAGTCCACATGTTAGTTATTTGATACGACTTTTAGTTGCTAAATGGCTTGTGATATCCCCAGGAATATCTTGTCTCTGAAAATAGACCCAAGGCAACGCGTGTAACCCGGGTTATTCAAGGTTATGAAACCCATTCATTCAAGTCCAACTTTGACTCTTGGCCATCAGGATCTGCACCTGCCCCTGA</genome_strand>
        <mrna_strand>TCTCTAAATCATGATGATGTGTTCATTCTGGACACTAAAGACAAGATATATCAATTCAATGGTGCAAACTCCAATATCCAAGAAAGGGCCAAAGCATTGGAAGTTATTCAGTTTTTGAAGGAAAAATATCATGAGGGGACGTGTGATGTTGCAATTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGGAAATTTGCAAGCTGAGTCTGATTCTGGATCATTCTGGGTTTTGTTTGGTGGATTTGCTCCAATTAGCAAAAAGGTTATTACTGAAGATGATATTGTTCCCGAGAAGACACCTCCTAAACTTAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCACTGATGGTCAAGTCAGTCCTGTAGATGGTGAACTTTCAAAGTCTAGCTTGGAAAACAATAAATGCTATCTTTTGGATTGCGGTGCTGAGGTGTTTGTTTGGATTGGTCGTGTAACTCAACTGGAGGAGAGGAAAGCTGCCATTCAAACTGCAGAG.........................................................................GAATATCTTGTCTCTGAAAATAGACCCAAGGCAACGCGTGTAACCCGGGTTATTCAAGGTTATGAAACCCATTCATTCAAGTCCAACTTTGACTCTTGGCCATCAAGATCTGCACCTGCCCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294701" ref_strand="-" ref_description="SGN-E294701 [cLET-17-C13](-)">
      <seq>taacccgggttattcaaggttatgaaacccattcattcaagtccaactttgactcttggccatcaggatctgcacctgcccctgaagagggaagaggaaaagtagcagctttgctgaagcagcaaggtgctggcgtcaaaggtgccagcaaaagtgctcctgtaattgaggaagtgcctccgttgcttgaagagggtggaaaattagaggtatggcgcataaatggtaatgcaaagacacctgtcccaaaagaagatattggtaaattctacagtggagattgctatgtggttctctacaactaccattctcatgaaaggagagacgattactatctatgttggtggattggaaaggatagtattgaggaggaccaaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="102324" stop="104118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102624" g_stop="102731" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102732" i_stop="102804" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102805" g_stop="102905" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="209" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102906" i_stop="102991" i_length="86">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102992" g_stop="103150" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="368" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103151" i_stop="103804" i_length="654">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103805" g_stop="103818" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="382" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E294701" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294701" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102624" e_stop="102731"/>
          <exon e_start="102805" e_stop="102905"/>
          <exon e_start="102992" e_stop="103150"/>
          <exon e_start="103805" e_stop="103818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCGGGTTATTCAAGGTTATGAAACCCATTCATTCAAGTCCAACTTTGACTCTTGGCCATCAGGATCTGCACCTGCCCCTGAAGAGGGAAGAGGAAAAGTAGCAGGTAAATTTTTTCTCTACTTGTGAAGTGTAATGTTGTTTGGTGCCAGTAGTTCTAAGTTCTCGCATCTTTACAGCTTTGCTGAAGCAGCAAGGTGCTGGCGTCAAAGGTGCCAGCAAAAGTGCTCCTGTAATTGAGGAAGTGCCTCCGTTGCTTGAAGAGGGTGGAAAATTAGAGGTCTGATCAGCACTGTTATTTCCATTTCTTCACCAATGTGTGTTGATATAACCAGCTTGTTTTACTAAAAATATGAGATTTATTAGGTATGGCGCATAAATGGTAATGCAAAGACACCTGTCCCAAAAGAAGATATTGGTAAATTCTACAGTGGAGATTGCTATGTGGTTCTCTACAACTACCATTCTCATGAAAGGAGAGACGATTACTATCTATGTTGGTGGATTGGAAAGGATAGTATTGAGGTAATGTGGATTGTCACTGCAATTCAAGGGTCCATGCATTTCTTCCCATAAATTTTATTTGATAATTAAGTTGATATGCCATGCATCTGAGAATTATAGTTATCATTTGTTTTAACTTGCTTGTGAGCTAGCCCTTCATGGACCTGGTGAAAAAAGGAAATGAAACCAAAAAATGTAATGCAAAGGAAACGAAACAAAAAAATATAATGGTACATCTAAGAACTTCAATTGTGTAAATGATTCTCATATGTTTGTACTTGTGAACTGTTCTTTAATTTGATTAGCGTGGAGATAGTTATAAAAGAAAGTCTTACCTAAAAAAGGATTTATTACACTAGAGTGAGGTAGATGTGATTTTAATAATAGATAAAGTGCTTTAAAGTGAGGTTTGTAGTAAGAATGCACTTCTAGGAATAAGTAATTTACTGGAATAATACTATTTGTTTTAGTTTGTAATGGTAGGAGATTCTGATCTTCTCCACCAGGGGAAGGGGTCAAAGTGAAATTGAAAGAACTAAAAAAACCAGCCATGGCTTTCATCTAGTACCCCCCTTTCTTAGTTTGTGTACCATCTTTCTGCTTTCTTGGAGATAGGTAGTGAGTCTAAAGGACTTATCCAGTTTCCATATGTGATAAAGTTGTGTCTTGATACAGGAGGACCAAATCAC</genome_strand>
        <mrna_strand>TAACCCGGGTTATTCAAGGTTATGAAACCCATTCATTCAAGTCCAACTTTGACTCTTGGCCATCAGGATCTGCACCTGCCCCTGAAGAGGGAAGAGGAAAAGTAGCAG.........................................................................CTTTGCTGAAGCAGCAAGGTGCTGGCGTCAAAGGTGCCAGCAAAAGTGCTCCTGTAATTGAGGAAGTGCCTCCGTTGCTTGAAGAGGGTGGAAAATTAGAG......................................................................................GTATGGCGCATAAATGGTAATGCAAAGACACCTGTCCCAAAAGAAGATATTGGTAAATTCTACAGTGGAGATTGCTATGTGGTTCTCTACAACTACCATTCTCATGAAAGGAGAGACGATTACTATCTATGTTGGTGGATTGGAAAGGATAGTATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACCAAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294700" ref_strand="+" ref_description="SGN-E294700 [cLET-17-C13]">
      <seq>taacccgggttattcaaggttatgaaacccattcattcaagtccaactttgactcttggccatcaggatctgcacctgcccctgaagagggaagaggaaaagtagcagctttgctgaagcagcaaggtgctggcgtcaaaggtgccagcaaaagtgctcctgtaattgaggaagtgcctccgttgcttgaagagggtggaaaattagaggtatggcgcataaatggtaatgcaaagacacctgtcccaaaagaagatattggtaaattctacagtggagattgctatgtggttctctacaactaccattctcatgaaaggagagacgattactatctatgttggtggattggaaaggatagtattgaggaggaccaaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="102324" stop="104118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102624" g_stop="102731" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102732" i_stop="102804" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102805" g_stop="102905" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="209" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102906" i_stop="102991" i_length="86">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102992" g_stop="103150" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="368" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103151" i_stop="103804" i_length="654">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103805" g_stop="103818" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="382" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E294700" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102624" e_stop="102731"/>
          <exon e_start="102805" e_stop="102905"/>
          <exon e_start="102992" e_stop="103150"/>
          <exon e_start="103805" e_stop="103818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCGGGTTATTCAAGGTTATGAAACCCATTCATTCAAGTCCAACTTTGACTCTTGGCCATCAGGATCTGCACCTGCCCCTGAAGAGGGAAGAGGAAAAGTAGCAGGTAAATTTTTTCTCTACTTGTGAAGTGTAATGTTGTTTGGTGCCAGTAGTTCTAAGTTCTCGCATCTTTACAGCTTTGCTGAAGCAGCAAGGTGCTGGCGTCAAAGGTGCCAGCAAAAGTGCTCCTGTAATTGAGGAAGTGCCTCCGTTGCTTGAAGAGGGTGGAAAATTAGAGGTCTGATCAGCACTGTTATTTCCATTTCTTCACCAATGTGTGTTGATATAACCAGCTTGTTTTACTAAAAATATGAGATTTATTAGGTATGGCGCATAAATGGTAATGCAAAGACACCTGTCCCAAAAGAAGATATTGGTAAATTCTACAGTGGAGATTGCTATGTGGTTCTCTACAACTACCATTCTCATGAAAGGAGAGACGATTACTATCTATGTTGGTGGATTGGAAAGGATAGTATTGAGGTAATGTGGATTGTCACTGCAATTCAAGGGTCCATGCATTTCTTCCCATAAATTTTATTTGATAATTAAGTTGATATGCCATGCATCTGAGAATTATAGTTATCATTTGTTTTAACTTGCTTGTGAGCTAGCCCTTCATGGACCTGGTGAAAAAAGGAAATGAAACCAAAAAATGTAATGCAAAGGAAACGAAACAAAAAAATATAATGGTACATCTAAGAACTTCAATTGTGTAAATGATTCTCATATGTTTGTACTTGTGAACTGTTCTTTAATTTGATTAGCGTGGAGATAGTTATAAAAGAAAGTCTTACCTAAAAAAGGATTTATTACACTAGAGTGAGGTAGATGTGATTTTAATAATAGATAAAGTGCTTTAAAGTGAGGTTTGTAGTAAGAATGCACTTCTAGGAATAAGTAATTTACTGGAATAATACTATTTGTTTTAGTTTGTAATGGTAGGAGATTCTGATCTTCTCCACCAGGGGAAGGGGTCAAAGTGAAATTGAAAGAACTAAAAAAACCAGCCATGGCTTTCATCTAGTACCCCCCTTTCTTAGTTTGTGTACCATCTTTCTGCTTTCTTGGAGATAGGTAGTGAGTCTAAAGGACTTATCCAGTTTCCATATGTGATAAAGTTGTGTCTTGATACAGGAGGACCAAATCAC</genome_strand>
        <mrna_strand>TAACCCGGGTTATTCAAGGTTATGAAACCCATTCATTCAAGTCCAACTTTGACTCTTGGCCATCAGGATCTGCACCTGCCCCTGAAGAGGGAAGAGGAAAAGTAGCAG.........................................................................CTTTGCTGAAGCAGCAAGGTGCTGGCGTCAAAGGTGCCAGCAAAAGTGCTCCTGTAATTGAGGAAGTGCCTCCGTTGCTTGAAGAGGGTGGAAAATTAGAG......................................................................................GTATGGCGCATAAATGGTAATGCAAAGACACCTGTCCCAAAAGAAGATATTGGTAAATTCTACAGTGGAGATTGCTATGTGGTTCTCTACAACTACCATTCTCATGAAAGGAGAGACGATTACTATCTATGTTGGTGGATTGGAAAGGATAGTATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACCAAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271733" ref_strand="+" ref_description="SGN-E271733 [cLEM-23-J24]">
      <seq>cataaatggtaatgcaaagacacctgtcccaaaagaagatattggtaaattctacagtggagattgctatgtggttctctacaactaccattctcatgaaaggagagacgattactatctatgttggtggattggaaaggatagtattgaggaggaccaaatcacggctgctcgattggccagtacaatgtgcaattcactcaaaggaagacctgtgctgggtcgagtgtttcaagggaaagaacctccacagtttgttgcaatcttccagcccatgttggtccttaagggtggtttgagcactggctacaaaaactatattgctgacaaaggcttgaatgatgaaacctatactgctgattcagttgcacttattcggttatctggaacttctgtgcataataacaaagcggttcaagtggatgctgtgccaagttcactgaactctaatgagtgttttcttctgcaatctggctcttcattattcagttggcatggtaaccaaagttcttatgagcagcagcaattaacagcaaaggttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="102700" stop="105425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103000" g_stop="103150" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103151" i_stop="103804" i_length="654">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103805" g_stop="103873" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="220" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103874" i_stop="103947" i_length="74">
            <donor d_prob="0.746" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103948" g_stop="104016" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="289" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104017" i_stop="104107" i_length="91">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104108" g_stop="104245" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="427" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104246" i_stop="105007" i_length="762">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105008" g_stop="105125" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="545" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E271733" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103000" e_stop="103150"/>
          <exon e_start="103805" e_stop="103873"/>
          <exon e_start="103948" e_stop="104016"/>
          <exon e_start="104108" e_stop="104245"/>
          <exon e_start="105008" e_stop="105125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAATGGTAATGCAAAGACACCTGTCCCAAAAGAAGATATTGGTAAATTCTACAGTGGAGATTGCTATGTGGTTCTCTACAACTACCATTCTCATGAAAGGAGAGACGATTACTATCTATGTTGGTGGATTGGAAAGGATAGTATTGAGGTAATGTGGATTGTCACTGCAATTCAAGGGTCCATGCATTTCTTCCCATAAATTTTATTTGATAATTAAGTTGATATGCCATGCATCTGAGAATTATAGTTATCATTTGTTTTAACTTGCTTGTGAGCTAGCCCTTCATGGACCTGGTGAAAAAAGGAAATGAAACCAAAAAATGTAATGCAAAGGAAACGAAACAAAAAAATATAATGGTACATCTAAGAACTTCAATTGTGTAAATGATTCTCATATGTTTGTACTTGTGAACTGTTCTTTAATTTGATTAGCGTGGAGATAGTTATAAAAGAAAGTCTTACCTAAAAAAGGATTTATTACACTAGAGTGAGGTAGATGTGATTTTAATAATAGATAAAGTGCTTTAAAGTGAGGTTTGTAGTAAGAATGCACTTCTAGGAATAAGTAATTTACTGGAATAATACTATTTGTTTTAGTTTGTAATGGTAGGAGATTCTGATCTTCTCCACCAGGGGAAGGGGTCAAAGTGAAATTGAAAGAACTAAAAAAACCAGCCATGGCTTTCATCTAGTACCCCCCTTTCTTAGTTTGTGTACCATCTTTCTGCTTTCTTGGAGATAGGTAGTGAGTCTAAAGGACTTATCCAGTTTCCATATGTGATAAAGTTGTGTCTTGATACAGGAGGACCAAATCACGGCTGCTCGATTGGCCAGTACAATGTGCAATTCACTCAAAGGAAGACCTGTGCTGGTATTACTTGTCACATATTGGTTGTCTCTCTCTAAAGTTGGCAAGGTTTTAATTCGACACTAAACATTGTCCAGGGTCGAGTGTTTCAAGGGAAAGAACCTCCACAGTTTGTTGCAATCTTCCAGCCCATGTTGGTCCTTAAGGTACGTCGTCATACAGCATAATACAGGCTGCTGTTGCTGCAGTACTTGATTTACATCATCAATAGCCCTGATGAATTTTGATTTTCCTCAGGGTGGTTTGAGCACTGGCTACAAAAACTATATTGCTGACAAAGGCTTGAATGATGAAACCTATACTGCTGATTCAGTTGCACTTATTCGGTTATCTGGAACTTCTGTGCATAATAACAAAGCGGTTCAAGTGGATGCTGTAAGCTTATGACCTTCAACTTTTTCTTCTTGTTTTGGTCTATAAGGTTGCAGATTATCTTAATTGTTTTAGTATTTGAAGCAGATAATATCCTTTCTTCCTACAGTACCTGTTCTCCTATAATTATCTTGTTGATGTTACTTCATATGATATGCCAACCTGTTTTTAGATAGATGAGTAGCTACTCCCCAGGTTGATAACTTGATATAATCTTTCTTCGAGTCTTCACATCTCTTTTTCACATCTGGTATTAGTCCTCAGTATCCACCCCGTTGTTCTTGAGCTTATTTTGCTTCAATACTAAATAATGCCTTCAAGGGCAAATTACGGATTTTCTGCAACTAGTGGTTCTCTTGATGTACAAGTGTTTTTTATAATCCGTAAAAGGAACCAGTAATGCCAGAATGATTCTTACATGGACATTTATGTTCTCAAACCAGAACAAAGAACTCTTTACGAACATCAGACTGAATATCAGTGTAGTACAGCTACAAAGCCTTAGTCCCAATCGTTGACGTCTACTATGTAAATCTTTTGTATTTTTTGCAGTTATGATATCATTGAATTATACTTGATTGTGTTGGTAATGATGAGAGCCCATTAATTCTAATTCAGACAACTTGTCTGGCTTTGTCGATGACTGTATTCTGTGATTAGTGAAAGTTGCAGTTCTCTTAGTATACAAATTACTGTGAACTTATAAAAATAAAATTTTCTACGGGGATTGCTTATTTTTATTTTTTTCTGTGTCGGAACTGTCAGGTGCCAAGTTCACTGAACTCTAATGAGTGTTTTCTTCTGCAATCTGGCTCTTCATTATTCAGTTGGCATGGTAACCAGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAG</genome_strand>
        <mrna_strand>CATAAATGGTAATGCAAAGACACCTGTCCCAAAAGAAGATATTGGTAAATTCTACAGTGGAGATTGCTATGTGGTTCTCTACAACTACCATTCTCATGAAAGGAGAGACGATTACTATCTATGTTGGTGGATTGGAAAGGATAGTATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACCAAATCACGGCTGCTCGATTGGCCAGTACAATGTGCAATTCACTCAAAGGAAGACCTGTGCTG..........................................................................GGTCGAGTGTTTCAAGGGAAAGAACCTCCACAGTTTGTTGCAATCTTCCAGCCCATGTTGGTCCTTAAG...........................................................................................GGTGGTTTGAGCACTGGCTACAAAAACTATATTGCTGACAAAGGCTTGAATGATGAAACCTATACTGCTGATTCAGTTGCACTTATTCGGTTATCTGGAACTTCTGTGCATAATAACAAAGCGGTTCAAGTGGATGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCAAGTTCACTGAACTCTAATGAGTGTTTTCTTCTGCAATCTGGCTCTTCATTATTCAGTTGGCATGGTAACCAAAGTTCTTATGAGCAGCAGCAATTAACAGCAAAGGTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564778" ref_strand="+" ref_description="SGN-E564778 [3027]">
      <seq>gtattgaggaggaccaaatcacagctgctcgattggccagtacaattgtgcaattcgcttaaaggaagacctgtgctgggtccgggtgtttcaagggaaagaacctccacagtttgttgcaatcttccatgcccatgttggtccttaagggtggtttgagctctggctacaaaaactatattgctgacaaaggcttgaatgatgaaaccctatactgctgattcagttgcacttattcggttatctggaacttctgtgcataataccaaagcggttcacgtggatgctgtgccaagttcactgaacctctaatgagtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="103499" stop="105338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103797" g_stop="103873" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103874" i_stop="103947" i_length="74">
            <donor d_prob="0.746" d_score="0.92"/>
            <acceptor a_prob="0.769" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103948" g_stop="104016" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="149" r_length="71" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104017" i_stop="104107" i_length="91">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104108" g_stop="104245" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="288" r_length="139" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104246" i_stop="105007" i_length="762">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105008" g_stop="105038" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="320" r_length="32" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E564778" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103797" e_stop="103873"/>
          <exon e_start="103948" e_stop="104016"/>
          <exon e_start="104108" e_stop="104245"/>
          <exon e_start="105008" e_stop="105038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACAGGAGGACCAAATCACGGCTGCTCGATTGGCCAGTACAA-TGTGCAATTCACTCAAAGGAAGACCTGTGCTGGTATTACTTGTCACATATTGGTTGTCTCTCTCTAAAGTTGGCAAGGTTTTAATTCGACACTAAACATTGTCCAGGGT-CGAGTGTTTCAAGGGAAAGAACCTCCACAGTTTGTTGCAATCTTCCA-GCCCATGTTGGTCCTTAAGGTACGTCGTCATACAGCATAATACAGGCTGCTGTTGCTGCAGTACTTGATTTACATCATCAATAGCCCTGATGAATTTTGATTTTCCTCAGGGTGGTTTGAGCACTGGCTACAAAAACTATATTGCTGACAAAGGCTTGAATGATGAAA-CCTATACTGCTGATTCAGTTGCACTTATTCGGTTATCTGGAACTTCTGTGCATAATAACAAAGCGGTTCAAGTGGATGCTGTAAGCTTATGACCTTCAACTTTTTCTTCTTGTTTTGGTCTATAAGGTTGCAGATTATCTTAATTGTTTTAGTATTTGAAGCAGATAATATCCTTTCTTCCTACAGTACCTGTTCTCCTATAATTATCTTGTTGATGTTACTTCATATGATATGCCAACCTGTTTTTAGATAGATGAGTAGCTACTCCCCAGGTTGATAACTTGATATAATCTTTCTTCGAGTCTTCACATCTCTTTTTCACATCTGGTATTAGTCCTCAGTATCCACCCCGTTGTTCTTGAGCTTATTTTGCTTCAATACTAAATAATGCCTTCAAGGGCAAATTACGGATTTTCTGCAACTAGTGGTTCTCTTGATGTACAAGTGTTTTTTATAATCCGTAAAAGGAACCAGTAATGCCAGAATGATTCTTACATGGACATTTATGTTCTCAAACCAGAACAAAGAACTCTTTACGAACATCAGACTGAATATCAGTGTAGTACAGCTACAAAGCCTTAGTCCCAATCGTTGACGTCTACTATGTAAATCTTTTGTATTTTTTGCAGTTATGATATCATTGAATTATACTTGATTGTGTTGGTAATGATGAGAGCCCATTAATTCTAATTCAGACAACTTGTCTGGCTTTGTCGATGACTGTATTCTGTGATTAGTGAAAGTTGCAGTTCTCTTAGTATACAAATTACTGTGAACTTATAAAAATAAAATTTTCTACGGGGATTGCTTATTTTTATTTTTTTCTGTGTCGGAACTGTCAGGTGCCAAGTTCACTGAA-CTCTAATGAGTGTT</genome_strand>
        <mrna_strand>GTATTGAGGAGGACCAAATCACAGCTGCTCGATTGGCCAGTACAATTGTGCAATTCGCTTAAAGGAAGACCTGTGCTG..........................................................................GGTCCGGGTGTTTCAAGGGAAAGAACCTCCACAGTTTGTTGCAATCTTCCATGCCCATGTTGGTCCTTAAG...........................................................................................GGTGGTTTGAGCTCTGGCTACAAAAACTATATTGCTGACAAAGGCTTGAATGATGAAACCCTATACTGCTGATTCAGTTGCACTTATTCGGTTATCTGGAACTTCTGTGCATAATACCAAAGCGGTTCACGTGGATGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCAAGTTCACTGAACCTCTAATGAGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479118" ref_strand="+" ref_description="SGN-E479118 [cSTD-8-L17]">
      <seq>cttgaatgatgaaacctatactgctgattcagttgcacttattcggttttctggaacttctgtgcataataacaaagcggttcaagtggatgctgtgccaagttcactgaactctaatgagtgttttcttctgcaatctggctcttcattattcagttggcatggtaaccagagttcttatgagcagcagcaattagcagcaaaggttgcagaattcttgaagccaggagcaaatgtgaaacacactaaagaaggaacagagagctccgctttctggtttgcccttggaggaaaacaaagttataccagcaagaaagtggctccagaagtctccagggatccccacttgtttgcttattcatttaataaaggaaaatttgaggttgaagaaatctacaactttgctcaagatgatttattgaccgaggatgtcttactactcgacacacattctgaagtgtttgtttgggttggtcagtcagcaaactctaaagaaaagcagagtgcttttgaaattggacagaaatatgtggagatggctgcatctttggaaggattatcaccaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="103852" stop="107257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104152" g_stop="104245" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104246" i_stop="105007" i_length="762">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105008" g_stop="105136" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="223" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105137" i_stop="106340" i_length="1204">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106341" g_stop="106488" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="371" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106489" i_stop="106585" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.401" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106586" g_stop="106596" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="382" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106597" i_stop="106687" i_length="91">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106688" g_stop="106828" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="523" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106912" g_stop="106957" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="569" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E479118" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104152" e_stop="104245"/>
          <exon e_start="105008" e_stop="105136"/>
          <exon e_start="106341" e_stop="106488"/>
          <exon e_start="106586" e_stop="106596"/>
          <exon e_start="106688" e_stop="106828"/>
          <exon e_start="106912" e_stop="106957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAATGATGAAACCTATACTGCTGATTCAGTTGCACTTATTCGGTTATCTGGAACTTCTGTGCATAATAACAAAGCGGTTCAAGTGGATGCTGTAAGCTTATGACCTTCAACTTTTTCTTCTTGTTTTGGTCTATAAGGTTGCAGATTATCTTAATTGTTTTAGTATTTGAAGCAGATAATATCCTTTCTTCCTACAGTACCTGTTCTCCTATAATTATCTTGTTGATGTTACTTCATATGATATGCCAACCTGTTTTTAGATAGATGAGTAGCTACTCCCCAGGTTGATAACTTGATATAATCTTTCTTCGAGTCTTCACATCTCTTTTTCACATCTGGTATTAGTCCTCAGTATCCACCCCGTTGTTCTTGAGCTTATTTTGCTTCAATACTAAATAATGCCTTCAAGGGCAAATTACGGATTTTCTGCAACTAGTGGTTCTCTTGATGTACAAGTGTTTTTTATAATCCGTAAAAGGAACCAGTAATGCCAGAATGATTCTTACATGGACATTTATGTTCTCAAACCAGAACAAAGAACTCTTTACGAACATCAGACTGAATATCAGTGTAGTACAGCTACAAAGCCTTAGTCCCAATCGTTGACGTCTACTATGTAAATCTTTTGTATTTTTTGCAGTTATGATATCATTGAATTATACTTGATTGTGTTGGTAATGATGAGAGCCCATTAATTCTAATTCAGACAACTTGTCTGGCTTTGTCGATGACTGTATTCTGTGATTAGTGAAAGTTGCAGTTCTCTTAGTATACAAATTACTGTGAACTTATAAAAATAAAATTTTCTACGGGGATTGCTTATTTTTATTTTTTTCTGTGTCGGAACTGTCAGGTGCCAAGTTCACTGAACTCTAATGAGTGTTTTCTTCTGCAATCTGGCTCTTCATTATTCAGTTGGCATGGTAACCAGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAGGTGAGATGTTTATTGAAACTGGAAAGACTTCTCACCTTTTTCCCATCATTCTCTTTATGACTAGGAAGGGTTCAATCTTTTAAGTACTCCGGGAGAAATTGCTTATGGTTTTGCTTTGAAATATTCAAAGACTTGAGGTGAATTTAAGTTTCTTTTCTCATAGGCAGATCCCCACTGAGTTAATGTGAGTTCCGCTAGATATAGAATAAATTACCATGAAATGAAGTGTATAGTTGTCTACAGTATATGTGAGTTTTGTATGGTGAAAGTTGCTTGAAGTTGTTATCTGGCAATCCTCATCATTTGAGTGCTAGCATGGAGGGTAATAATCTACTCCAGTTGGACAAAATGTCACGTTTTATCCTGCTTAAAATTTTGGTAATTTTTTTTTTGGCAAATGTCTCGAGCAGATTCCACTCAGTTCATAAGAGTTCACCTTGTGTGACTGGTTGTGCTTGTATGATGGTATCATTATGTCTGTGCTTGATGAAGGATGCATCTATTTTCATTAGTCATTAATAAATGTCTCCATATGCATGAAACATTTCTTTTACTTTGATGCTGTAGAACGATTTTAAATGCACTTTGTAAGAAAGCGAAACCATCTTAAAATGCACTAATTGAGAGATGATGCAGTGAAATTTCATAAACTTACCTTGATCAAATTACAGTCGTCAGGTTGTTATACAGTAACATCGTGACTGAATAACTATTTGAAATATGAAAAATGCAAGCATAGCCTGCATCTGTTAAGATGTATATCCACGGTGGTGAAATTTTAGCAAAATATACAGCATTATAGCTAGAAATGATTGCATGGACACCTCTTCATCTTCATTGGTTTTGACTAGTGTTTCAGCTTTTCTTTTTTACCTGGAATGAATAATGAAATAATCAAGAAAGTGGCTACCAACCTCAAATTTCATATGATTGTTCTTGCCGCTGACTTTTCGTTGCAATCACAAAAGGCTGAAGTTTCATTACTTAGTTTCGTGGATATTAAGCGTATACTTTTATGATTTCTAGCTTGTAGCAGATAGCATAGCTTTGATTTGTGTGTTGTACCGGTTGTGTAGTTTTAAGTATCCACATGCATATTGACATCCACTCTGAAATTGTGAAGAAGATATCCCCAATCGATATGCCTCATGTTTGTGTATGTCCTGCACTGGACTAATGTACTTAATTTTTTGTGCAACTTCAGCCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAGGTATGCCTATTATTCTATAATTCTTTTGATTTTTTATTAGCTTTCATCTGCTAACGATCTTTTTAATGATTTGCATGTTATCAACATTGATATCCAGGAAAATTTGAGGTAATGTTCTACAGTACAAGTGTAAAATTTCTCACTTTCTGCTCCATCCTTTTACTGTGTTTTTAAAATTTGTTCTCTACTCATTTGATAGGTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATG</genome_strand>
        <mrna_strand>CTTGAATGATGAAACCTATACTGCTGATTCAGTTGCACTTATTCGGTTTTCTGGAACTTCTGTGCATAATAACAAAGCGGTTCAAGTGGATGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCAAGTTCACTGAACTCTAATGAGTGTTTTCTTCTGCAATCTGGCTCTTCATTATTCAGTTGGCATGGTAACCAGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAGCAAATGTGAAACACACTAAAGAAGGAACAGAGAGCTCCGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAG.................................................................................................GAAAATTTGAG...........................................................................................GTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATTCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAAACTCTAAAGAAAAGCAGAGTGCTTTTGAAATTGGACAG...................................................................................AAATATGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245006" ref_strand="+" ref_description="SGN-E245006 [cLEF-2-F24]">
      <seq>actctaatgagtgttttcttctgcaatctggctcttcattattcagttggcatggtaaccagagttcttatgagcagcagcaattagcagcaaaggttgcagaattcttgaagccaggagcaacagtgaaacacactaaagaaggaacagagagctctgctttctggtttgcccttggaggaaaacaaagttataccagcaagaaagtggctccagaagtctccagggatccccacttgtttgcttattcatttaataaaggaaaatttgaggttgaagaaatctacaactttgctcaagatgatttattgaccgaggatgtcttactactcgacacacatgctgaagtgtttgtttgggttggtcagtcagcagactccaaagaaaagcagagcgcttttgaaattggacagaaatacgtggagatggctgcatctttggaaggattatcaccaaatgttccactctataaaatcacagaaggaaatgaaccttgcttttttacaacatttttctcatgggatcctgcaaaagccagtgctcatggaaactcattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="104724" stop="107955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105024" g_stop="105136" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105137" i_stop="106340" i_length="1204">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106341" g_stop="106488" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="261" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106489" i_stop="106585" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.401" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106586" g_stop="106596" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="272" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106597" i_stop="106687" i_length="91">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106688" g_stop="106828" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="413" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106912" g_stop="107037" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="539" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107038" i_stop="107636" i_length="599">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107637" g_stop="107655" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="558" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E245006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105024" e_stop="105136"/>
          <exon e_start="106341" e_stop="106488"/>
          <exon e_start="106586" e_stop="106596"/>
          <exon e_start="106688" e_stop="106828"/>
          <exon e_start="106912" e_stop="107037"/>
          <exon e_start="107637" e_stop="107655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTAATGAGTGTTTTCTTCTGCAATCTGGCTCTTCATTATTCAGTTGGCATGGTAACCAGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAGGTGAGATGTTTATTGAAACTGGAAAGACTTCTCACCTTTTTCCCATCATTCTCTTTATGACTAGGAAGGGTTCAATCTTTTAAGTACTCCGGGAGAAATTGCTTATGGTTTTGCTTTGAAATATTCAAAGACTTGAGGTGAATTTAAGTTTCTTTTCTCATAGGCAGATCCCCACTGAGTTAATGTGAGTTCCGCTAGATATAGAATAAATTACCATGAAATGAAGTGTATAGTTGTCTACAGTATATGTGAGTTTTGTATGGTGAAAGTTGCTTGAAGTTGTTATCTGGCAATCCTCATCATTTGAGTGCTAGCATGGAGGGTAATAATCTACTCCAGTTGGACAAAATGTCACGTTTTATCCTGCTTAAAATTTTGGTAATTTTTTTTTTGGCAAATGTCTCGAGCAGATTCCACTCAGTTCATAAGAGTTCACCTTGTGTGACTGGTTGTGCTTGTATGATGGTATCATTATGTCTGTGCTTGATGAAGGATGCATCTATTTTCATTAGTCATTAATAAATGTCTCCATATGCATGAAACATTTCTTTTACTTTGATGCTGTAGAACGATTTTAAATGCACTTTGTAAGAAAGCGAAACCATCTTAAAATGCACTAATTGAGAGATGATGCAGTGAAATTTCATAAACTTACCTTGATCAAATTACAGTCGTCAGGTTGTTATACAGTAACATCGTGACTGAATAACTATTTGAAATATGAAAAATGCAAGCATAGCCTGCATCTGTTAAGATGTATATCCACGGTGGTGAAATTTTAGCAAAATATACAGCATTATAGCTAGAAATGATTGCATGGACACCTCTTCATCTTCATTGGTTTTGACTAGTGTTTCAGCTTTTCTTTTTTACCTGGAATGAATAATGAAATAATCAAGAAAGTGGCTACCAACCTCAAATTTCATATGATTGTTCTTGCCGCTGACTTTTCGTTGCAATCACAAAAGGCTGAAGTTTCATTACTTAGTTTCGTGGATATTAAGCGTATACTTTTATGATTTCTAGCTTGTAGCAGATAGCATAGCTTTGATTTGTGTGTTGTACCGGTTGTGTAGTTTTAAGTATCCACATGCATATTGACATCCACTCTGAAATTGTGAAGAAGATATCCCCAATCGATATGCCTCATGTTTGTGTATGTCCTGCACTGGACTAATGTACTTAATTTTTTGTGCAACTTCAGCCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAGGTATGCCTATTATTCTATAATTCTTTTGATTTTTTATTAGCTTTCATCTGCTAACGATCTTTTTAATGATTTGCATGTTATCAACATTGATATCCAGGAAAATTTGAGGTAATGTTCTACAGTACAAGTGTAAAATTTCTCACTTTCTGCTCCATCCTTTTACTGTGTTTTTAAAATTTGTTCTCTACTCATTTGATAGGTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGTGTAAGTGACTAAACCTTTAGTCTGATTGTCATTATGAGTCCTCCTGGCATGAACTCGTAGACACTATGTTGATGCCATAGAAGAGTTCCATTAGTCATCCTTTATTTAAACATTTCTTTTATGATTTCGGAGAGGATGGGGAGATGAGGTGCAATTTTTACATGGAACTGATAAGTTGTACAGTATTGTATTTGCATGCTGAACTCAATTACCATTTCAGCTTTGATGACTAGACCCTGCAGTATTTGTATATGTGTTTTTGAACAACTGATAACGATAGACTGATGACATATTTGGATACCTGTTTCTGATCCTTAAACCAAAATCATGCAGTTATTATAAATCATCTTGTACAAGATACTGAATGATCTCTCTTAGAGAAGATCTCACACAATAGCTTTGAAGTAGGGACTAAACAAGCATATTGAAGCTTCTTCTTTCTCACTGTTGAAGGCAAAGTTACTTTCCATGAGGGTGAAACTTTTAAATAGTCATTTTAACTACAATATATTTGTGGTTGTAACTTATTGGTTCATCAATTATCTCACCTCTAATAGTTCTATAATCTGTATATTGCACTAACCTTCCTATTTAACCAGGCTCATGGAAACTCATTCC</genome_strand>
        <mrna_strand>ACTCTAATGAGTGTTTTCTTCTGCAATCTGGCTCTTCATTATTCAGTTGGCATGGTAACCAGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAG.................................................................................................GAAAATTTGAG...........................................................................................GTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAG...................................................................................AAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGGAAACTCATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697296" ref_strand="+" ref_description="SGN-E697296 [FA02AE08]">
      <seq>cgttagtggtttcttctgcaatctggctcttcattattcagttggcatggtaaccagagttcttatgagcagcagcaattagcagcaaaggttgcagaattcttgaagccaggagcaacagtgaaacacactaaagaaggaacagagagctctgctttctggtttgcccttggaggaaaacaaagttataccagcaagaaagtggctccagaagtctccagggatccccacttgtttgcttattcatttaataaaggaaaatttgaggttgaagaaatctacaactttgctcaagatgatttattgaccgaggatgtcttactactcgacacacatgctgaagtgtttgtttgggttggtcagtcagcagactccaaagaaaagcagagcgcttttgaaattggacagaaatacgtggagatggctgcaaaagccagtgctcatggaaactcattccagaagaaggttatgctactctttggggttggtcatgcttcagagaatcagcaaaggtcaaatggggcaggtgggccaacccaaagggcttcagcgttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaacctcacctgtacgatcaagcagaacctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggcccaagattccgaaaaagtttcagaacctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="104731" stop="109202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105029" g_stop="105136" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105137" i_stop="106340" i_length="1204">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106341" g_stop="106488" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="256" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106489" i_stop="106585" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.401" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106586" g_stop="106596" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="267" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106597" i_stop="106687" i_length="91">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106688" g_stop="106828" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="408" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106912" g_stop="106929" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="426" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106930" i_stop="107025" i_length="96">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107026" g_stop="107037" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="438" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107038" i_stop="107636" i_length="599">
            <donor d_prob="0.923" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107637" g_stop="107699" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="501" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107700" i_stop="108262" i_length="563">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108263" g_stop="108557" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="796" r_length="295" r_score="0.993"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="108847" g_stop="108902" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="852" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E697296" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105029" e_stop="105136"/>
          <exon e_start="106341" e_stop="106488"/>
          <exon e_start="106586" e_stop="106596"/>
          <exon e_start="106688" e_stop="106828"/>
          <exon e_start="106912" e_stop="106929"/>
          <exon e_start="107026" e_stop="107037"/>
          <exon e_start="107637" e_stop="107699"/>
          <exon e_start="108263" e_stop="108557"/>
          <exon e_start="108847" e_stop="108902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGTGTTTTCTTCTGCAATCTGGCTCTTCATTATTCAGTTGGCATGGTAACCAGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAGGTGAGATGTTTATTGAAACTGGAAAGACTTCTCACCTTTTTCCCATCATTCTCTTTATGACTAGGAAGGGTTCAATCTTTTAAGTACTCCGGGAGAAATTGCTTATGGTTTTGCTTTGAAATATTCAAAGACTTGAGGTGAATTTAAGTTTCTTTTCTCATAGGCAGATCCCCACTGAGTTAATGTGAGTTCCGCTAGATATAGAATAAATTACCATGAAATGAAGTGTATAGTTGTCTACAGTATATGTGAGTTTTGTATGGTGAAAGTTGCTTGAAGTTGTTATCTGGCAATCCTCATCATTTGAGTGCTAGCATGGAGGGTAATAATCTACTCCAGTTGGACAAAATGTCACGTTTTATCCTGCTTAAAATTTTGGTAATTTTTTTTTTGGCAAATGTCTCGAGCAGATTCCACTCAGTTCATAAGAGTTCACCTTGTGTGACTGGTTGTGCTTGTATGATGGTATCATTATGTCTGTGCTTGATGAAGGATGCATCTATTTTCATTAGTCATTAATAAATGTCTCCATATGCATGAAACATTTCTTTTACTTTGATGCTGTAGAACGATTTTAAATGCACTTTGTAAGAAAGCGAAACCATCTTAAAATGCACTAATTGAGAGATGATGCAGTGAAATTTCATAAACTTACCTTGATCAAATTACAGTCGTCAGGTTGTTATACAGTAACATCGTGACTGAATAACTATTTGAAATATGAAAAATGCAAGCATAGCCTGCATCTGTTAAGATGTATATCCACGGTGGTGAAATTTTAGCAAAATATACAGCATTATAGCTAGAAATGATTGCATGGACACCTCTTCATCTTCATTGGTTTTGACTAGTGTTTCAGCTTTTCTTTTTTACCTGGAATGAATAATGAAATAATCAAGAAAGTGGCTACCAACCTCAAATTTCATATGATTGTTCTTGCCGCTGACTTTTCGTTGCAATCACAAAAGGCTGAAGTTTCATTACTTAGTTTCGTGGATATTAAGCGTATACTTTTATGATTTCTAGCTTGTAGCAGATAGCATAGCTTTGATTTGTGTGTTGTACCGGTTGTGTAGTTTTAAGTATCCACATGCATATTGACATCCACTCTGAAATTGTGAAGAAGATATCCCCAATCGATATGCCTCATGTTTGTGTATGTCCTGCACTGGACTAATGTACTTAATTTTTTGTGCAACTTCAGCCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAGGTATGCCTATTATTCTATAATTCTTTTGATTTTTTATTAGCTTTCATCTGCTAACGATCTTTTTAATGATTTGCATGTTATCAACATTGATATCCAGGAAAATTTGAGGTAATGTTCTACAGTACAAGTGTAAAATTTCTCACTTTCTGCTCCATCCTTTTACTGTGTTTTTAAAATTTGTTCTCTACTCATTTGATAGGTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGTGTAAGTGACTAAACCTTTAGTCTGATTGTCATTATGAGTCCTCCTGGCATGAACTCGTAGACACTATGTTGATGCCATAGAAGAGTTCCATTAGTCATCCTTTATTTAAACATTTCTTTTATGATTTCGGAGAGGATGGGGAGATGAGGTGCAATTTTTACATGGAACTGATAAGTTGTACAGTATTGTATTTGCATGCTGAACTCAATTACCATTTCAGCTTTGATGACTAGACCCTGCAGTATTTGTATATGTGTTTTTGAACAACTGATAACGATAGACTGATGACATATTTGGATACCTGTTTCTGATCCTTAAACCAAAATCATGCAGTTATTATAAATCATCTTGTACAAGATACTGAATGATCTCTCTTAGAGAAGATCTCACACAATAGCTTTGAAGTAGGGACTAAACAAGCATATTGAAGCTTCTTCTTTCTCACTGTTGAAGGCAAAGTTACTTTCCATGAGGGTGAAACTTTTAAATAGTCATTTTAACTACAATATATTTGTGGTTGTAACTTATTGGTTCATCAATTATCTCACCTCTAATAGTTCTATAATCTGTATATTGCACTAACCTTCCTATTTAACCAGGCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAGGTAATTTCTTGACTTCATTTAAGCAATGATGGGTTTATGCCCAATTTTTTTCGTATTTGCAAATGTTTTCTCATTTCCATTTCTGTCATTGTAAGACTACTGAAATCTGTGAATCATGTAATTTATGATTCCTTTCAGAGACCAATGTATAGCATATGTGACTACTTTTTCCTGTCTAAGCTGGCCATTGTAGAATGAAGAAAATCTTTTTGGTTGTGCAAGTGTCATATCTCTGTGTGGGTTTTCTTTAGAATCATAATATAGAGCCCCCTCCCTCTCCCCTTTGGGGTGGTTAAATAGAAAAACTAAAAGAAAGTGATATTAGAAAATAAAGACCGTGGAATAGGAGAACGACAATTGCCAAAAAATGCAATGGATATTTGGGTACCAAAATGTTACAGATTATGAGTGTGTACATAAGTAAAATATTCTGTGTAGATATCATGGTTATTAAGCAGTAGTTGTTAACGGTTGATTCTGTCATTATCAATCAAATGTGGAATGCGATAAATCTCAGATGTTCAAAAAATCCCAATGTGCTAACAGCCTGCTCTATATTTCAGAATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAG</genome_strand>
        <mrna_strand>CGTTAGTGGTTTCTTCTGCAATCTGGCTCTTCATTATTCAGTTGGCATGGTAACCAGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAG.................................................................................................GAAAATTTGAG...........................................................................................GTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAG...................................................................................AAATACGTGGAGATGGCT................................................................................................GCAAAAGCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAACCTCACCTGTACGATCAAGCAGAACCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGCCCAAGATTCCGAAAAAGTTTCAGAACCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276742" ref_strand="+" ref_description="SGN-E276742 [cLEN-14-H22]">
      <seq>agagttcttatgagcagcagcaattagcagcaaaggttgcagaattcttgaagccaggagcaacagtgaaacacactaaagaaggaacagagagctctgctttctggtttgcccttggaggaaaacaaagttataccagcaagaaagtggctccagaagtctccagggatccccacttgtttgcttattcatttaataaaggaaaatttgaggttgaagaaatctacaactttgctcaagatgatttattgaccgaggatgtcttactactcgacacacatgctgaagtgtttgtttgggttggtcagtcagcagactccaaagaaaagcagagcgcttttgaaattggacagaaatacgtggagatggctgcatctttggaaggattatcaccaaatgttccactctataaaatcacagaaggaaatgaaccttgcttttttacaacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="104784" stop="107311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105084" g_stop="105136" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105137" i_stop="106340" i_length="1204">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106341" g_stop="106488" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="201" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106489" i_stop="106585" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.401" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106586" g_stop="106596" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="212" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106597" i_stop="106687" i_length="91">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106688" g_stop="106828" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="353" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106912" g_stop="107011" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="453" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E276742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105084" e_stop="105136"/>
          <exon e_start="106341" e_stop="106488"/>
          <exon e_start="106586" e_stop="106596"/>
          <exon e_start="106688" e_stop="106828"/>
          <exon e_start="106912" e_stop="107011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAGGTGAGATGTTTATTGAAACTGGAAAGACTTCTCACCTTTTTCCCATCATTCTCTTTATGACTAGGAAGGGTTCAATCTTTTAAGTACTCCGGGAGAAATTGCTTATGGTTTTGCTTTGAAATATTCAAAGACTTGAGGTGAATTTAAGTTTCTTTTCTCATAGGCAGATCCCCACTGAGTTAATGTGAGTTCCGCTAGATATAGAATAAATTACCATGAAATGAAGTGTATAGTTGTCTACAGTATATGTGAGTTTTGTATGGTGAAAGTTGCTTGAAGTTGTTATCTGGCAATCCTCATCATTTGAGTGCTAGCATGGAGGGTAATAATCTACTCCAGTTGGACAAAATGTCACGTTTTATCCTGCTTAAAATTTTGGTAATTTTTTTTTTGGCAAATGTCTCGAGCAGATTCCACTCAGTTCATAAGAGTTCACCTTGTGTGACTGGTTGTGCTTGTATGATGGTATCATTATGTCTGTGCTTGATGAAGGATGCATCTATTTTCATTAGTCATTAATAAATGTCTCCATATGCATGAAACATTTCTTTTACTTTGATGCTGTAGAACGATTTTAAATGCACTTTGTAAGAAAGCGAAACCATCTTAAAATGCACTAATTGAGAGATGATGCAGTGAAATTTCATAAACTTACCTTGATCAAATTACAGTCGTCAGGTTGTTATACAGTAACATCGTGACTGAATAACTATTTGAAATATGAAAAATGCAAGCATAGCCTGCATCTGTTAAGATGTATATCCACGGTGGTGAAATTTTAGCAAAATATACAGCATTATAGCTAGAAATGATTGCATGGACACCTCTTCATCTTCATTGGTTTTGACTAGTGTTTCAGCTTTTCTTTTTTACCTGGAATGAATAATGAAATAATCAAGAAAGTGGCTACCAACCTCAAATTTCATATGATTGTTCTTGCCGCTGACTTTTCGTTGCAATCACAAAAGGCTGAAGTTTCATTACTTAGTTTCGTGGATATTAAGCGTATACTTTTATGATTTCTAGCTTGTAGCAGATAGCATAGCTTTGATTTGTGTGTTGTACCGGTTGTGTAGTTTTAAGTATCCACATGCATATTGACATCCACTCTGAAATTGTGAAGAAGATATCCCCAATCGATATGCCTCATGTTTGTGTATGTCCTGCACTGGACTAATGTACTTAATTTTTTGTGCAACTTCAGCCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAGGTATGCCTATTATTCTATAATTCTTTTGATTTTTTATTAGCTTTCATCTGCTAACGATCTTTTTAATGATTTGCATGTTATCAACATTGATATCCAGGAAAATTTGAGGTAATGTTCTACAGTACAAGTGTAAAATTTCTCACTTTCTGCTCCATCCTTTTACTGTGTTTTTAAAATTTGTTCTCTACTCATTTGATAGGTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTT</genome_strand>
        <mrna_strand>AGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAG.................................................................................................GAAAATTTGAG...........................................................................................GTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAG...................................................................................AAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418171" ref_strand="+" ref_description="SGN-E418171 [STM-27-C3]">
      <seq>caattagcagcaaaggttgcagaattcttgaagccaggagcaacagtgaaacacactaaagaaggaacagagagctccgctttctggtttgcccttggaggaaaacaaagttataccagcaagaaagtggctccagaagtctccagggatccccacttgtttgcttattcttttaataaaggaaaatttgaggttgaagaaatctacaactttgctcaagatgatttattgaccgaggatgtcttgctactcgacacacattctgaagtgtttgtttgggttggtcagtcagcagactctaaagaaaagcagagcgcttttgaaattggacagaaatatgtggagatggctgcatctttggaaggattatcaccaaatgttccactctataaaatcacagaaggaaatgaaccttgcttctttacaacatttttctcatgggatcctgcaaaagccagtgcccatggaaactcattccagaagaaggttatgctactctttggggttggtcatgcttcagagaatcagcaaaggtcaaatggggcaggtgggccaacccaaagggcttcagccttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcagggcttctcacaaagagcagctgcaatagctgcattatctaacgttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="104804" stop="108743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105104" g_stop="105136" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105137" i_stop="106340" i_length="1204">
            <donor d_prob="0.910" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106341" g_stop="106488" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="181" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106489" i_stop="106585" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.401" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106586" g_stop="106596" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="192" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106597" i_stop="106687" i_length="91">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106688" g_stop="106828" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="333" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106912" g_stop="107037" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="459" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107038" i_stop="107636" i_length="599">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107637" g_stop="107699" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="522" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107700" i_stop="108262" i_length="563">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108263" g_stop="108443" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="703" r_length="181" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E418171" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105104" e_stop="105136"/>
          <exon e_start="106341" e_stop="106488"/>
          <exon e_start="106586" e_stop="106596"/>
          <exon e_start="106688" e_stop="106828"/>
          <exon e_start="106912" e_stop="107037"/>
          <exon e_start="107637" e_stop="107699"/>
          <exon e_start="108263" e_stop="108443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTAGCAGCAAAGGTTGCAGAATTCTTGAAGGTGAGATGTTTATTGAAACTGGAAAGACTTCTCACCTTTTTCCCATCATTCTCTTTATGACTAGGAAGGGTTCAATCTTTTAAGTACTCCGGGAGAAATTGCTTATGGTTTTGCTTTGAAATATTCAAAGACTTGAGGTGAATTTAAGTTTCTTTTCTCATAGGCAGATCCCCACTGAGTTAATGTGAGTTCCGCTAGATATAGAATAAATTACCATGAAATGAAGTGTATAGTTGTCTACAGTATATGTGAGTTTTGTATGGTGAAAGTTGCTTGAAGTTGTTATCTGGCAATCCTCATCATTTGAGTGCTAGCATGGAGGGTAATAATCTACTCCAGTTGGACAAAATGTCACGTTTTATCCTGCTTAAAATTTTGGTAATTTTTTTTTTGGCAAATGTCTCGAGCAGATTCCACTCAGTTCATAAGAGTTCACCTTGTGTGACTGGTTGTGCTTGTATGATGGTATCATTATGTCTGTGCTTGATGAAGGATGCATCTATTTTCATTAGTCATTAATAAATGTCTCCATATGCATGAAACATTTCTTTTACTTTGATGCTGTAGAACGATTTTAAATGCACTTTGTAAGAAAGCGAAACCATCTTAAAATGCACTAATTGAGAGATGATGCAGTGAAATTTCATAAACTTACCTTGATCAAATTACAGTCGTCAGGTTGTTATACAGTAACATCGTGACTGAATAACTATTTGAAATATGAAAAATGCAAGCATAGCCTGCATCTGTTAAGATGTATATCCACGGTGGTGAAATTTTAGCAAAATATACAGCATTATAGCTAGAAATGATTGCATGGACACCTCTTCATCTTCATTGGTTTTGACTAGTGTTTCAGCTTTTCTTTTTTACCTGGAATGAATAATGAAATAATCAAGAAAGTGGCTACCAACCTCAAATTTCATATGATTGTTCTTGCCGCTGACTTTTCGTTGCAATCACAAAAGGCTGAAGTTTCATTACTTAGTTTCGTGGATATTAAGCGTATACTTTTATGATTTCTAGCTTGTAGCAGATAGCATAGCTTTGATTTGTGTGTTGTACCGGTTGTGTAGTTTTAAGTATCCACATGCATATTGACATCCACTCTGAAATTGTGAAGAAGATATCCCCAATCGATATGCCTCATGTTTGTGTATGTCCTGCACTGGACTAATGTACTTAATTTTTTGTGCAACTTCAGCCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAGGTATGCCTATTATTCTATAATTCTTTTGATTTTTTATTAGCTTTCATCTGCTAACGATCTTTTTAATGATTTGCATGTTATCAACATTGATATCCAGGAAAATTTGAGGTAATGTTCTACAGTACAAGTGTAAAATTTCTCACTTTCTGCTCCATCCTTTTACTGTGTTTTTAAAATTTGTTCTCTACTCATTTGATAGGTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGTGTAAGTGACTAAACCTTTAGTCTGATTGTCATTATGAGTCCTCCTGGCATGAACTCGTAGACACTATGTTGATGCCATAGAAGAGTTCCATTAGTCATCCTTTATTTAAACATTTCTTTTATGATTTCGGAGAGGATGGGGAGATGAGGTGCAATTTTTACATGGAACTGATAAGTTGTACAGTATTGTATTTGCATGCTGAACTCAATTACCATTTCAGCTTTGATGACTAGACCCTGCAGTATTTGTATATGTGTTTTTGAACAACTGATAACGATAGACTGATGACATATTTGGATACCTGTTTCTGATCCTTAAACCAAAATCATGCAGTTATTATAAATCATCTTGTACAAGATACTGAATGATCTCTCTTAGAGAAGATCTCACACAATAGCTTTGAAGTAGGGACTAAACAAGCATATTGAAGCTTCTTCTTTCTCACTGTTGAAGGCAAAGTTACTTTCCATGAGGGTGAAACTTTTAAATAGTCATTTTAACTACAATATATTTGTGGTTGTAACTTATTGGTTCATCAATTATCTCACCTCTAATAGTTCTATAATCTGTATATTGCACTAACCTTCCTATTTAACCAGGCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAGGTAATTTCTTGACTTCATTTAAGCAATGATGGGTTTATGCCCAATTTTTTTCGTATTTGCAAATGTTTTCTCATTTCCATTTCTGTCATTGTAAGACTACTGAAATCTGTGAATCATGTAATTTATGATTCCTTTCAGAGACCAATGTATAGCATATGTGACTACTTTTTCCTGTCTAAGCTGGCCATTGTAGAATGAAGAAAATCTTTTTGGTTGTGCAAGTGTCATATCTCTGTGTGGGTTTTCTTTAGAATCATAATATAGAGCCCCCTCCCTCTCCCCTTTGGGGTGGTTAAATAGAAAAACTAAAAGAAAGTGATATTAGAAAATAAAGACCGTGGAATAGGAGAACGACAATTGCCAAAAAATGCAATGGATATTTGGGTACCAAAATGTTACAGATTATGAGTGTGTACATAAGTAAAATATTCTGTGTAGATATCATGGTTATTAAGCAGTAGTTGTTAACGGTTGATTCTGTCATTATCAATCAAATGTGGAATGCGATAAATCTCAGATGTTCAAAAAATCCCAATGTGCTAACAGCCTGCTCTATATTTCAGAATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTA</genome_strand>
        <mrna_strand>CAATTAGCAGCAAAGGTTGCAGAATTCTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCCGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCTTTTAATAAAG.................................................................................................GAAAATTTGAG...........................................................................................GTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTGCTACTCGACACACATTCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCTAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAG...................................................................................AAATATGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTCTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCCTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGGCTTCTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441023" ref_strand="+" ref_description="SGN-E441023 [cSTA-28-N12]">
      <seq>cacacggggggagaggtgttgaagccaggagcggcagtgagacacactaaagaaggaacagacagctccgctttctggtttgcccttggaggaaaacaaagttataccagcaagaaagtggctggagaagtctccagggatccccacttggttgcttattcttttaataaaggaaaatttgaggttgaagaaatctacaactttgctcaagatgatttattgaccgaggatgtcttgctactcgacacacattctgaagtgtttgtttgggttggtcagtcagcagactctaaagaaaagcagagcgcttttgaaattggacagaaatatgtggagatggctgcatctttggaaggattatcaccaaatgttccactctataaaatcacagaaggaaatgaaccttgcttctttacaacatttttctcatgggatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="106039" stop="107326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106341" g_stop="106488" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="172" r_length="148" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106489" i_stop="106585" i_length="97">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.401" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106586" g_stop="106596" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="183" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106597" i_stop="106687" i_length="91">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106688" g_stop="106828" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="324" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106912" g_stop="107026" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="439" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E441023" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106341" e_stop="106488"/>
          <exon e_start="106586" e_stop="106596"/>
          <exon e_start="106688" e_stop="106828"/>
          <exon e_start="106912" e_stop="107026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAGGTATGCCTATTATTCTATAATTCTTTTGATTTTTTATTAGCTTTCATCTGCTAACGATCTTTTTAATGATTTGCATGTTATCAACATTGATATCCAGGAAAATTTGAGGTAATGTTCTACAGTACAAGTGTAAAATTTCTCACTTTCTGCTCCATCCTTTTACTGTGTTTTTAAAATTTGTTCTCTACTCATTTGATAGGTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTG</genome_strand>
        <mrna_strand>CCAGGAGCGGCAGTGAGACACACTAAAGAAGGAACAGACAGCTCCGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTGGAGAAGTCTCCAGGGATCCCCACTTGGTTGCTTATTCTTTTAATAAAG.................................................................................................GAAAATTTGAG...........................................................................................GTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTGCTACTCGACACACATTCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCTAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAG...................................................................................AAATATGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTCTTTACAACATTTTTCTCATGGGATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323447" ref_strand="+" ref_description="SGN-E323447 [cTOC-7-I20]">
      <seq>gaaggaacagagagctctgctttctggggggcccttggaggaaaacaaagttataccagcaagaaagtggctccagaagtctccagggatccccacttgtttgcttattcatttaataaaggaaaatttgaggttgaagaaatctacaactttgctcaagatgatttattgaccgaggatgtcttactactcgacacacatgctgaagtgtttgtttgggttggtcagtcagcagactccaaagaaaagcagagcgcttttgaaattggacagaaatacgtggagatggctgcatctttggaaggattatcaccaaatgttccactctataaaatcacagaaggaaatgaaccttgcttttttacaacatttttctcatgggatcctgcaaaagccagtgctcatggaaactcattccagaagaaggttatgctactctttggggttggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="106068" stop="107991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106368" g_stop="106488" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106489" i_stop="106585" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.401" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106586" g_stop="106596" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="132" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106597" i_stop="106687" i_length="91">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106688" g_stop="106828" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="273" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106912" g_stop="107037" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="399" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107038" i_stop="107636" i_length="599">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107637" g_stop="107691" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="454" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E323447" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106368" e_stop="106488"/>
          <exon e_start="106586" e_stop="106596"/>
          <exon e_start="106688" e_stop="106828"/>
          <exon e_start="106912" e_stop="107037"/>
          <exon e_start="107637" e_stop="107691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAGGTATGCCTATTATTCTATAATTCTTTTGATTTTTTATTAGCTTTCATCTGCTAACGATCTTTTTAATGATTTGCATGTTATCAACATTGATATCCAGGAAAATTTGAGGTAATGTTCTACAGTACAAGTGTAAAATTTCTCACTTTCTGCTCCATCCTTTTACTGTGTTTTTAAAATTTGTTCTCTACTCATTTGATAGGTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGTGTAAGTGACTAAACCTTTAGTCTGATTGTCATTATGAGTCCTCCTGGCATGAACTCGTAGACACTATGTTGATGCCATAGAAGAGTTCCATTAGTCATCCTTTATTTAAACATTTCTTTTATGATTTCGGAGAGGATGGGGAGATGAGGTGCAATTTTTACATGGAACTGATAAGTTGTACAGTATTGTATTTGCATGCTGAACTCAATTACCATTTCAGCTTTGATGACTAGACCCTGCAGTATTTGTATATGTGTTTTTGAACAACTGATAACGATAGACTGATGACATATTTGGATACCTGTTTCTGATCCTTAAACCAAAATCATGCAGTTATTATAAATCATCTTGTACAAGATACTGAATGATCTCTCTTAGAGAAGATCTCACACAATAGCTTTGAAGTAGGGACTAAACAAGCATATTGAAGCTTCTTCTTTCTCACTGTTGAAGGCAAAGTTACTTTCCATGAGGGTGAAACTTTTAAATAGTCATTTTAACTACAATATATTTGTGGTTGTAACTTATTGGTTCATCAATTATCTCACCTCTAATAGTTCTATAATCTGTATATTGCACTAACCTTCCTATTTAACCAGGCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATG</genome_strand>
        <mrna_strand>GAAGGAACAGAGAGCTCTGCTTTCTGGGGGGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAG.................................................................................................GAAAATTTGAG...........................................................................................GTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAG...................................................................................AAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202689" ref_strand="+" ref_description="SGN-E202689 [cLEC-19-F10]">
      <seq>ttggaggaaaacaaagttataccagcaagaaagtggctccagaagtctccagggatccccacttgtttgcttattcatttaataaaggaaaatttgaggttgaagaaatctacaactttgctcaagatgatttattgaccgaggatgtcttactactcgacacacatgctgaagtgtttgtttgggttggtcagtcagcagactccaaagaaaagcagagcgcttttgaaattggacagaaatacgtggagatggctgcatctttggaaggattatcaccaaatgttccactctataaaatcacagaaggaaatgaaccttgcttttttacaacatttttctcatgggatcctgcaaaagccagtgctcatggaaactcattccagaagaaggttatgctactctttggggttggtcatgcttcagagaatcagcaaaggtcaaatggggcaggtgggccaacccaaagggcttcagcgttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="106102" stop="108671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106402" g_stop="106488" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106489" i_stop="106585" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.401" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106586" g_stop="106596" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="98" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106597" i_stop="106687" i_length="91">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106688" g_stop="106828" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="239" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106912" g_stop="107037" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="365" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107038" i_stop="107636" i_length="599">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107637" g_stop="107699" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="428" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107700" i_stop="108262" i_length="563">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108263" g_stop="108371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="537" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E202689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106402" e_stop="106488"/>
          <exon e_start="106586" e_stop="106596"/>
          <exon e_start="106688" e_stop="106828"/>
          <exon e_start="106912" e_stop="107037"/>
          <exon e_start="107637" e_stop="107699"/>
          <exon e_start="108263" e_stop="108371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAGGTATGCCTATTATTCTATAATTCTTTTGATTTTTTATTAGCTTTCATCTGCTAACGATCTTTTTAATGATTTGCATGTTATCAACATTGATATCCAGGAAAATTTGAGGTAATGTTCTACAGTACAAGTGTAAAATTTCTCACTTTCTGCTCCATCCTTTTACTGTGTTTTTAAAATTTGTTCTCTACTCATTTGATAGGTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGTGTAAGTGACTAAACCTTTAGTCTGATTGTCATTATGAGTCCTCCTGGCATGAACTCGTAGACACTATGTTGATGCCATAGAAGAGTTCCATTAGTCATCCTTTATTTAAACATTTCTTTTATGATTTCGGAGAGGATGGGGAGATGAGGTGCAATTTTTACATGGAACTGATAAGTTGTACAGTATTGTATTTGCATGCTGAACTCAATTACCATTTCAGCTTTGATGACTAGACCCTGCAGTATTTGTATATGTGTTTTTGAACAACTGATAACGATAGACTGATGACATATTTGGATACCTGTTTCTGATCCTTAAACCAAAATCATGCAGTTATTATAAATCATCTTGTACAAGATACTGAATGATCTCTCTTAGAGAAGATCTCACACAATAGCTTTGAAGTAGGGACTAAACAAGCATATTGAAGCTTCTTCTTTCTCACTGTTGAAGGCAAAGTTACTTTCCATGAGGGTGAAACTTTTAAATAGTCATTTTAACTACAATATATTTGTGGTTGTAACTTATTGGTTCATCAATTATCTCACCTCTAATAGTTCTATAATCTGTATATTGCACTAACCTTCCTATTTAACCAGGCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAGGTAATTTCTTGACTTCATTTAAGCAATGATGGGTTTATGCCCAATTTTTTTCGTATTTGCAAATGTTTTCTCATTTCCATTTCTGTCATTGTAAGACTACTGAAATCTGTGAATCATGTAATTTATGATTCCTTTCAGAGACCAATGTATAGCATATGTGACTACTTTTTCCTGTCTAAGCTGGCCATTGTAGAATGAAGAAAATCTTTTTGGTTGTGCAAGTGTCATATCTCTGTGTGGGTTTTCTTTAGAATCATAATATAGAGCCCCCTCCCTCTCCCCTTTGGGGTGGTTAAATAGAAAAACTAAAAGAAAGTGATATTAGAAAATAAAGACCGTGGAATAGGAGAACGACAATTGCCAAAAAATGCAATGGATATTTGGGTACCAAAATGTTACAGATTATGAGTGTGTACATAAGTAAAATATTCTGTGTAGATATCATGGTTATTAAGCAGTAGTTGTTAACGGTTGATTCTGTCATTATCAATCAAATGTGGAATGCGATAAATCTCAGATGTTCAAAAAATCCCAATGTGCTAACAGCCTGCTCTATATTTCAGAATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCAC</genome_strand>
        <mrna_strand>TTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAG.................................................................................................GAAAATTTGAG...........................................................................................GTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAG...................................................................................AAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314203" ref_strand="+" ref_description="SGN-E314203 [cTOA-21-C3]">
      <seq>ttgtttgcttattcatttaataaaggaaaatttgaggttgaagaaatctacaactttgctcaagatgatttattgaccgaggatgtcttactactcgacacacatgctgaagtgtttgtttgggttggtcagtcagcagactccaaagaaaagcagagcgcttttgaaattggacagaaatacgtggagatggctgcatctttggaaggattatcaccaaatgttccactctataaaatcacagaaggaaatgaaccttgcttttttacaacatttttctcatgggatcctgcaaaagccagtgctcatggaaactcattccagaagaaggttatgctactctttggggttggtcatgcttcagagaatcagcaaaggtcaaatggggcaggtgggccaacccaaagggcttcagcgttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatncaacagaagctcacctgtacgatncagcagaagctctcctgttcgatcagtagactctggccctgctngaagtgatctttctactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="106164" stop="109167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106464" g_stop="106488" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106489" i_stop="106585" i_length="97">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.401" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106586" g_stop="106596" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="36" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106597" i_stop="106687" i_length="91">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106688" g_stop="106828" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="177" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106912" g_stop="107037" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="303" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107038" i_stop="107636" i_length="599">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107637" g_stop="107699" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="366" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107700" i_stop="108262" i_length="563">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108263" g_stop="108557" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="661" r_length="295" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.125" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108847" g_stop="108867" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="682" r_length="21" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E314203" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106464" e_stop="106488"/>
          <exon e_start="106586" e_stop="106596"/>
          <exon e_start="106688" e_stop="106828"/>
          <exon e_start="106912" e_stop="107037"/>
          <exon e_start="107637" e_stop="107699"/>
          <exon e_start="108263" e_stop="108557"/>
          <exon e_start="108847" e_stop="108867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTGCTTATTCATTTAATAAAGGTATGCCTATTATTCTATAATTCTTTTGATTTTTTATTAGCTTTCATCTGCTAACGATCTTTTTAATGATTTGCATGTTATCAACATTGATATCCAGGAAAATTTGAGGTAATGTTCTACAGTACAAGTGTAAAATTTCTCACTTTCTGCTCCATCCTTTTACTGTGTTTTTAAAATTTGTTCTCTACTCATTTGATAGGTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGTGTAAGTGACTAAACCTTTAGTCTGATTGTCATTATGAGTCCTCCTGGCATGAACTCGTAGACACTATGTTGATGCCATAGAAGAGTTCCATTAGTCATCCTTTATTTAAACATTTCTTTTATGATTTCGGAGAGGATGGGGAGATGAGGTGCAATTTTTACATGGAACTGATAAGTTGTACAGTATTGTATTTGCATGCTGAACTCAATTACCATTTCAGCTTTGATGACTAGACCCTGCAGTATTTGTATATGTGTTTTTGAACAACTGATAACGATAGACTGATGACATATTTGGATACCTGTTTCTGATCCTTAAACCAAAATCATGCAGTTATTATAAATCATCTTGTACAAGATACTGAATGATCTCTCTTAGAGAAGATCTCACACAATAGCTTTGAAGTAGGGACTAAACAAGCATATTGAAGCTTCTTCTTTCTCACTGTTGAAGGCAAAGTTACTTTCCATGAGGGTGAAACTTTTAAATAGTCATTTTAACTACAATATATTTGTGGTTGTAACTTATTGGTTCATCAATTATCTCACCTCTAATAGTTCTATAATCTGTATATTGCACTAACCTTCCTATTTAACCAGGCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAGGTAATTTCTTGACTTCATTTAAGCAATGATGGGTTTATGCCCAATTTTTTTCGTATTTGCAAATGTTTTCTCATTTCCATTTCTGTCATTGTAAGACTACTGAAATCTGTGAATCATGTAATTTATGATTCCTTTCAGAGACCAATGTATAGCATATGTGACTACTTTTTCCTGTCTAAGCTGGCCATTGTAGAATGAAGAAAATCTTTTTGGTTGTGCAAGTGTCATATCTCTGTGTGGGTTTTCTTTAGAATCATAATATAGAGCCCCCTCCCTCTCCCCTTTGGGGTGGTTAAATAGAAAAACTAAAAGAAAGTGATATTAGAAAATAAAGACCGTGGAATAGGAGAACGACAATTGCCAAAAAATGCAATGGATATTTGGGTACCAAAATGTTACAGATTATGAGTGTGTACATAAGTAAAATATTCTGTGTAGATATCATGGTTATTAAGCAGTAGTTGTTAACGGTTGATTCTGTCATTATCAATCAAATGTGGAATGCGATAAATCTCAGATGTTCAAAAAATCCCAATGTGCTAACAGCCTGCTCTATATTTCAGAATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTG</genome_strand>
        <mrna_strand>TTGTTTGCTTATTCATTTAATAAAG.................................................................................................GAAAATTTGAG...........................................................................................GTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAG...................................................................................AAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATNCAACAGAAGCTCACCTGTACGATNCAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTN.................................................................................................................................................................................................................................................................................................GAAGTGATCTTTCTACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710832" ref_strand="+" ref_description="SGN-E710832 [FA56DG09]">
      <seq>ctgaagtgtttgtttgggttggtcagtcagcagactccaaagaaaagcagagcgcttttgaaattggacagaaatacgtggagatggctgcatctttggaaggattatcaccaaatgttccactctataaaatcacagaaggaaatgaaccttgcttttttacaacatttttctcatgggatcctgcaaaagccagtgctcatggaaactcattccagaagaaggttatgctactctttggggttggtcatgcttcagagaatcagcaaaggtcaaatggggcaggtgggccaacccaaagggcttcagcgttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggcccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggtcacaaccagagcaggatgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaaccgaagagaggcctatctatcggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="106458" stop="109355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106758" g_stop="106828" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106912" g_stop="107037" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="197" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107038" i_stop="107636" i_length="599">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107637" g_stop="107699" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="260" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107700" i_stop="108262" i_length="563">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108263" g_stop="108557" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="556" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108847" g_stop="109049" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="759" r_length="203" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E710832" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106758" e_stop="106828"/>
          <exon e_start="106912" e_stop="107037"/>
          <exon e_start="107637" e_stop="107699"/>
          <exon e_start="108263" e_stop="108557"/>
          <exon e_start="108847" e_stop="109049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGTGTAAGTGACTAAACCTTTAGTCTGATTGTCATTATGAGTCCTCCTGGCATGAACTCGTAGACACTATGTTGATGCCATAGAAGAGTTCCATTAGTCATCCTTTATTTAAACATTTCTTTTATGATTTCGGAGAGGATGGGGAGATGAGGTGCAATTTTTACATGGAACTGATAAGTTGTACAGTATTGTATTTGCATGCTGAACTCAATTACCATTTCAGCTTTGATGACTAGACCCTGCAGTATTTGTATATGTGTTTTTGAACAACTGATAACGATAGACTGATGACATATTTGGATACCTGTTTCTGATCCTTAAACCAAAATCATGCAGTTATTATAAATCATCTTGTACAAGATACTGAATGATCTCTCTTAGAGAAGATCTCACACAATAGCTTTGAAGTAGGGACTAAACAAGCATATTGAAGCTTCTTCTTTCTCACTGTTGAAGGCAAAGTTACTTTCCATGAGGGTGAAACTTTTAAATAGTCATTTTAACTACAATATATTTGTGGTTGTAACTTATTGGTTCATCAATTATCTCACCTCTAATAGTTCTATAATCTGTATATTGCACTAACCTTCCTATTTAACCAGGCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAGGTAATTTCTTGACTTCATTTAAGCAATGATGGGTTTATGCCCAATTTTTTTCGTATTTGCAAATGTTTTCTCATTTCCATTTCTGTCATTGTAAGACTACTGAAATCTGTGAATCATGTAATTTATGATTCCTTTCAGAGACCAATGTATAGCATATGTGACTACTTTTTCCTGTCTAAGCTGGCCATTGTAGAATGAAGAAAATCTTTTTGGTTGTGCAAGTGTCATATCTCTGTGTGGGTTTTCTTTAGAATCATAATATAGAGCCCCCTCCCTCTCCCCTTTGGGGTGGTTAAATAGAAAAACTAAAAGAAAGTGATATTAGAAAATAAAGACCGTGGAATAGGAGAACGACAATTGCCAAAAAATGCAATGGATATTTGGGTACCAAAATGTTACAGATTATGAGTGTGTACATAAGTAAAATATTCTGTGTAGATATCATGGTTATTAAGCAGTAGTTGTTAACGGTTGATTCTGTCATTATCAATCAAATGTGGAATGCGATAAATCTCAGATGTTCAAAAAATCCCAATGTGCTAACAGCCTGCTCTATATTTCAGAATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGG-CCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG</genome_strand>
        <mrna_strand>CTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAG...................................................................................AAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCACAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAACCGAAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613383" ref_strand="+" ref_description="SGN-E613383 [63156]">
      <seq>agagcgcttttgaaattggacagaaatatgtggagatggctgcatctttggaaggattatcaccaaatgttccactctataaaatcacagaaggaaatgaaccttgcttctttacaacatttttctcatgggatcctgcaaaagccagtgcccatggaaactcattccagaagaaggttatgctactctttggggttggtcatgcatcagagaatcagcaaaggtcaaatggggcaggtgggccaacccaaagggcttcagccttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtccgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtgcaagattccgaaaaagtttcagaacctaaggagattgttgagcccgctgagactaatgggtcagaaccagagcaggacgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatcttgacaacccctgtcaccgggattgattttaagcggcgagaggcctatctatcggatgaagagttcatgtctgtacttggtatgaacaaaagaaagcattctacaagttgccctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="106506" stop="109900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106806" g_stop="106828" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106912" g_stop="107037" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="149" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107038" i_stop="107636" i_length="599">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107637" g_stop="107699" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="212" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107700" i_stop="108262" i_length="563">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108263" g_stop="108557" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="507" r_length="295" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108847" g_stop="109049" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="712" r_length="205" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.907" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109528" g_stop="109600" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="788" r_length="76" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E613383" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106806" e_stop="106828"/>
          <exon e_start="106912" e_stop="107037"/>
          <exon e_start="107637" e_stop="107699"/>
          <exon e_start="108263" e_stop="108557"/>
          <exon e_start="108847" e_stop="109049"/>
          <exon e_start="109528" e_stop="109600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCGCTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGTGTAAGTGACTAAACCTTTAGTCTGATTGTCATTATGAGTCCTCCTGGCATGAACTCGTAGACACTATGTTGATGCCATAGAAGAGTTCCATTAGTCATCCTTTATTTAAACATTTCTTTTATGATTTCGGAGAGGATGGGGAGATGAGGTGCAATTTTTACATGGAACTGATAAGTTGTACAGTATTGTATTTGCATGCTGAACTCAATTACCATTTCAGCTTTGATGACTAGACCCTGCAGTATTTGTATATGTGTTTTTGAACAACTGATAACGATAGACTGATGACATATTTGGATACCTGTTTCTGATCCTTAAACCAAAATCATGCAGTTATTATAAATCATCTTGTACAAGATACTGAATGATCTCTCTTAGAGAAGATCTCACACAATAGCTTTGAAGTAGGGACTAAACAAGCATATTGAAGCTTCTTCTTTCTCACTGTTGAAGGCAAAGTTACTTTCCATGAGGGTGAAACTTTTAAATAGTCATTTTAACTACAATATATTTGTGGTTGTAACTTATTGGTTCATCAATTATCTCACCTCTAATAGTTCTATAATCTGTATATTGCACTAACCTTCCTATTTAACCAGGCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAGGTAATTTCTTGACTTCATTTAAGCAATGATGGGTTTATGCCCAATTTTTTTCGTATTTGCAAATGTTTTCTCATTTCCATTTCTGTCATTGTAAGACTACTGAAATCTGTGAATCATGTAATTTATGATTCCTTTCAGAGACCAATGTATAGCATATGTGACTACTTTTTCCTGTCTAAGCTGGCCATTGTAGAATGAAGAAAATCTTTTTGGTTGTGCAAGTGTCATATCTCTGTGTGGGTTTTCTTTAGAATCATAATATAGAGCCCCCTCCCTCTCCCCTTTGGGGTGGTTAAATAGAAAAACTAAAAGAAAGTGATATTAGAAAATAAAGACCGTGGAATAGGAGAACGACAATTGCCAAAAAATGCAATGGATATTTGGGTACCAAAATGTTACAGATTATGAGTGTGTACATAAGTAAAATATTCTGTGTAGATATCATGGTTATTAAGCAGTAGTTGTTAACGGTTGATTCTGTCATTATCAATCAAATGTGGAATGCGATAAATCTCAGATGTTCAAAAAATCCCAATGTGCTAACAGCCTGCTCTATATTTCAGAATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATC-TGACAA-CCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAA-GAAAG-AAGCATTCTACAAGTTG-CCTAAAT</genome_strand>
        <mrna_strand>AGAGCGCTTTTGAAATTGGACAG...................................................................................AAATATGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTCTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCATCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCCTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTCCGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTGCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCCGCTGAGACTAATGGGTCAGAACCAGAGCAGGACGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTTGACAACCCCTGTCACCGGGATTGATTTTAAGCGGCGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAGTTCATGTCTGTACTTGGTATGAACAAAAGAAAGCATTCTACAAGTTGCCCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584395" ref_strand="+" ref_description="SGN-E584395 [10220]">
      <seq>ctttggaaattggacagaactatgtggagatggctgcatcttcggaaggatattcaccaaatgtcccagtctataaaatcacagaaggaaatgaaccttgcttctttacaacatttttctcatgggatcctgcaaaagccagtgcccatggaaactcattccagaagaaggttatgctactctttggggttggtcatgcttcagagaatcagcaaaggtcaaatggggcaggtgggccaacccaaagggcttcatccttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagccaagtcaggcttcttcacaaagagcagcttgcaatagctgcattatctaacgttcttacagcggagaaaaagcagtcgagtgagagtggttctccctgtcccaatcaaacagaagctcacctgtccgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="106608" stop="109163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106812" g_stop="106828" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106912" g_stop="107037" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="143" r_length="126" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107038" i_stop="107636" i_length="599">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107637" g_stop="107699" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107700" i_stop="108262" i_length="563">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108263" g_stop="108557" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="505" r_length="299" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108847" g_stop="108863" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="522" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E584395" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106812" e_stop="106828"/>
          <exon e_start="106912" e_stop="107037"/>
          <exon e_start="107637" e_stop="107699"/>
          <exon e_start="108263" e_stop="108557"/>
          <exon e_start="108847" e_stop="108863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGAAATTGGACAGGTAATTCACAAGGCTATCATAGGCATTTACAATTATGCAAGCATGTTTTTAATTAACATTTTAATCCACTAATATGATTACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGTGTAAGTGACTAAACCTTTAGTCTGATTGTCATTATGAGTCCTCCTGGCATGAACTCGTAGACACTATGTTGATGCCATAGAAGAGTTCCATTAGTCATCCTTTATTTAAACATTTCTTTTATGATTTCGGAGAGGATGGGGAGATGAGGTGCAATTTTTACATGGAACTGATAAGTTGTACAGTATTGTATTTGCATGCTGAACTCAATTACCATTTCAGCTTTGATGACTAGACCCTGCAGTATTTGTATATGTGTTTTTGAACAACTGATAACGATAGACTGATGACATATTTGGATACCTGTTTCTGATCCTTAAACCAAAATCATGCAGTTATTATAAATCATCTTGTACAAGATACTGAATGATCTCTCTTAGAGAAGATCTCACACAATAGCTTTGAAGTAGGGACTAAACAAGCATATTGAAGCTTCTTCTTTCTCACTGTTGAAGGCAAAGTTACTTTCCATGAGGGTGAAACTTTTAAATAGTCATTTTAACTACAATATATTTGTGGTTGTAACTTATTGGTTCATCAATTATCTCACCTCTAATAGTTCTATAATCTGTATATTGCACTAACCTTCCTATTTAACCAGGCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAGGTAATTTCTTGACTTCATTTAAGCAATGATGGGTTTATGCCCAATTTTTTTCGTATTTGCAAATGTTTTCTCATTTCCATTTCTGTCATTGTAAGACTACTGAAATCTGTGAATCATGTAATTTATGATTCCTTTCAGAGACCAATGTATAGCATATGTGACTACTTTTTCCTGTCTAAGCTGGCCATTGTAGAATGAAGAAAATCTTTTTGGTTGTGCAAGTGTCATATCTCTGTGTGGGTTTTCTTTAGAATCATAATATAGAGCCCCCTCCCTCTCCCCTTTGGGGTGGTTAAATAGAAAAACTAAAAGAAAGTGATATTAGAAAATAAAGACCGTGGAATAGGAGAACGACAATTGCCAAAAAATGCAATGGATATTTGGGTACCAAAATGTTACAGATTATGAGTGTGTACATAAGTAAAATATTCTGTGTAGATATCATGGTTATTAAGCAGTAGTTGTTAACGGTTGATTCTGTCATTATCAATCAAATGTGGAATGCGATAAATCTCAGATGTTCAAAAAATCCCAATGTGCTAACAGCCTGCTCTATATTTCAGAATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAG-CAAGTCAGGCTTCTTCACAAAGAGCAGC-TGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCT-CCTGT-CCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACT</genome_strand>
        <mrna_strand>CTTTGGAAATTGGACAG...................................................................................AACTATGTGGAGATGGCTGCATCTTCGGAAGGATATTCACCAAATGTCCCAGTCTATAAAATCACAGAAGGAAATGAACCTTGCTTCTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCATCCTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCCAAGTCAGGCTTCTTCACAAAGAGCAGCTTGCAATAGCTGCATTATCTAACGTTCTTACAGCGGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCCTGTCCCAATCAAACAGAAGCTCACCTGTCCGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270650" ref_strand="+" ref_description="SGN-E270650 [cLEM-6-M5]">
      <seq>aaataccgtggagatggctgcatctttggaaggattatcaccaaatgttccactctataaaatcacagaaggaaatgaaccttgcttttttacaacatttttctcatgggatcctgcaaaagccagtgctcatggaaactcattccagaagaaggttatgctactctttggggttggtcatgcttcagagaatcagcaaaggtcaaatggggcaggtgggccaacccaaagggcttcagcgttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="106612" stop="109234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106912" g_stop="107037" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107038" i_stop="107636" i_length="599">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107637" g_stop="107699" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="190" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107700" i_stop="108262" i_length="563">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108263" g_stop="108557" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="485" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108847" g_stop="108934" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="573" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E270650" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106912" e_stop="107037"/>
          <exon e_start="107637" e_stop="107699"/>
          <exon e_start="108263" e_stop="108557"/>
          <exon e_start="108847" e_stop="108934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATA-CGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGTGTAAGTGACTAAACCTTTAGTCTGATTGTCATTATGAGTCCTCCTGGCATGAACTCGTAGACACTATGTTGATGCCATAGAAGAGTTCCATTAGTCATCCTTTATTTAAACATTTCTTTTATGATTTCGGAGAGGATGGGGAGATGAGGTGCAATTTTTACATGGAACTGATAAGTTGTACAGTATTGTATTTGCATGCTGAACTCAATTACCATTTCAGCTTTGATGACTAGACCCTGCAGTATTTGTATATGTGTTTTTGAACAACTGATAACGATAGACTGATGACATATTTGGATACCTGTTTCTGATCCTTAAACCAAAATCATGCAGTTATTATAAATCATCTTGTACAAGATACTGAATGATCTCTCTTAGAGAAGATCTCACACAATAGCTTTGAAGTAGGGACTAAACAAGCATATTGAAGCTTCTTCTTTCTCACTGTTGAAGGCAAAGTTACTTTCCATGAGGGTGAAACTTTTAAATAGTCATTTTAACTACAATATATTTGTGGTTGTAACTTATTGGTTCATCAATTATCTCACCTCTAATAGTTCTATAATCTGTATATTGCACTAACCTTCCTATTTAACCAGGCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAGGTAATTTCTTGACTTCATTTAAGCAATGATGGGTTTATGCCCAATTTTTTTCGTATTTGCAAATGTTTTCTCATTTCCATTTCTGTCATTGTAAGACTACTGAAATCTGTGAATCATGTAATTTATGATTCCTTTCAGAGACCAATGTATAGCATATGTGACTACTTTTTCCTGTCTAAGCTGGCCATTGTAGAATGAAGAAAATCTTTTTGGTTGTGCAAGTGTCATATCTCTGTGTGGGTTTTCTTTAGAATCATAATATAGAGCCCCCTCCCTCTCCCCTTTGGGGTGGTTAAATAGAAAAACTAAAAGAAAGTGATATTAGAAAATAAAGACCGTGGAATAGGAGAACGACAATTGCCAAAAAATGCAATGGATATTTGGGTACCAAAATGTTACAGATTATGAGTGTGTACATAAGTAAAATATTCTGTGTAGATATCATGGTTATTAAGCAGTAGTTGTTAACGGTTGATTCTGTCATTATCAATCAAATGTGGAATGCGATAAATCTCAGATGTTCAAAAAATCCCAATGTGCTAACAGCCTGCTCTATATTTCAGAATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTC</genome_strand>
        <mrna_strand>AAATACCGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271868" ref_strand="+" ref_description="SGN-E271868 [cLEM-8-N19]">
      <seq>ctcatggaaactcattccagaagaaggttatgctactctttggggttggtcatgcttcagagaatcagcaaaggtcaaatggggcaggtgggccaacccaaagggcttcagcgttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggtcagaaccagagcaggatgagggtggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="107338" stop="109263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107638" g_stop="107699" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107700" i_stop="108262" i_length="563">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108263" g_stop="108557" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="357" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108847" g_stop="108963" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="474" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E271868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107638" e_stop="107699"/>
          <exon e_start="108263" e_stop="108557"/>
          <exon e_start="108847" e_stop="108963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAGGTAATTTCTTGACTTCATTTAAGCAATGATGGGTTTATGCCCAATTTTTTTCGTATTTGCAAATGTTTTCTCATTTCCATTTCTGTCATTGTAAGACTACTGAAATCTGTGAATCATGTAATTTATGATTCCTTTCAGAGACCAATGTATAGCATATGTGACTACTTTTTCCTGTCTAAGCTGGCCATTGTAGAATGAAGAAAATCTTTTTGGTTGTGCAAGTGTCATATCTCTGTGTGGGTTTTCTTTAGAATCATAATATAGAGCCCCCTCCCTCTCCCCTTTGGGGTGGTTAAATAGAAAAACTAAAAGAAAGTGATATTAGAAAATAAAGACCGTGGAATAGGAGAACGACAATTGCCAAAAAATGCAATGGATATTTGGGTACCAAAATGTTACAGATTATGAGTGTGTACATAAGTAAAATATTCTGTGTAGATATCATGGTTATTAAGCAGTAGTTGTTAACGGTTGATTCTGTCATTATCAATCAAATGTGGAATGCGATAAATCTCAGATGTTCAAAAAATCCCAATGTGCTAACAGCCTGCTCTATATTTCAGAATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATG</genome_strand>
        <mrna_strand>CTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268887" ref_strand="+" ref_description="SGN-E268887 [cLEM-4-H5]">
      <seq>tggaaactcattccagaagaaagttatgctactctttggggttggtcatgcttcagagaatcagcaaaggtcaaatggggcaggtgggccaacccaaagggcttcagcgttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcaagcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaagagattgttgagcctgctgaaactaatgggtcagaaccagagcaggatgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaagcgaagagaggcctatctatcggatgaagaatttatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="107342" stop="109857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107642" g_stop="107699" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107700" i_stop="108262" i_length="563">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108263" g_stop="108557" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="353" r_length="295" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108847" g_stop="109049" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="556" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109528" g_stop="109557" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="586" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E268887" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107642" e_stop="107699"/>
          <exon e_start="108263" e_stop="108557"/>
          <exon e_start="108847" e_stop="109049"/>
          <exon e_start="109528" e_stop="109557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAGGTAATTTCTTGACTTCATTTAAGCAATGATGGGTTTATGCCCAATTTTTTTCGTATTTGCAAATGTTTTCTCATTTCCATTTCTGTCATTGTAAGACTACTGAAATCTGTGAATCATGTAATTTATGATTCCTTTCAGAGACCAATGTATAGCATATGTGACTACTTTTTCCTGTCTAAGCTGGCCATTGTAGAATGAAGAAAATCTTTTTGGTTGTGCAAGTGTCATATCTCTGTGTGGGTTTTCTTTAGAATCATAATATAGAGCCCCCTCCCTCTCCCCTTTGGGGTGGTTAAATAGAAAAACTAAAAGAAAGTGATATTAGAAAATAAAGACCGTGGAATAGGAGAACGACAATTGCCAAAAAATGCAATGGATATTTGGGTACCAAAATGTTACAGATTATGAGTGTGTACATAAGTAAAATATTCTGTGTAGATATCATGGTTATTAAGCAGTAGTTGTTAACGGTTGATTCTGTCATTATCAATCAAATGTGGAATGCGATAAATCTCAGATGTTCAAAAAATCCCAATGTGCTAACAGCCTGCTCTATATTTCAGAATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCT</genome_strand>
        <mrna_strand>TGGAAACTCATTCCAGAAGAAAGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAAGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAAGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAATTTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305295" ref_strand="+" ref_description="SGN-E305295 [cLEX-15-D21]">
      <seq>gtgataagagaatcggcaaaggtcaaatggggcaggtgggccaacccaaagggcttcagcgttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggtcagaaccagagcaggatgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaagcgaagagaggcctatctatcggatgaagaatttatgtctgtacttggtatgaagaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaaaggaaaactgatctcttctagatcctgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="107961" stop="109951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108263" g_stop="108557" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="305" r_length="295" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108847" g_stop="109049" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="508" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109528" g_stop="109651" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="632" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E305295" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108263" e_stop="108557"/>
          <exon e_start="108847" e_stop="109049"/>
          <exon e_start="109528" e_stop="109651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATC</genome_strand>
        <mrna_strand>AATCGGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410019" ref_strand="+" ref_description="SGN-E410019 [PPI-15-F12]">
      <seq>aaatggagcaggtgggccaacccaaagggcttcagccttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtccgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcccgctgagactaatgggtcagaaccagagcaggacgagggtggaaatgaaagcggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaagcggcgagaggcctatctgtcggatgaagaattcatgtctgtacttggtatgaaaaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaaaggaaaaccgatctcttctagaccctgcatcggagaaaacaaatggcctctcggtatcttcttgttgcaattctcgacattcgttcccatgtttcttgccagggcaacctacttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="107977" stop="110038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108277" g_stop="108557" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108847" g_stop="109049" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="484" r_length="203" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109528" g_stop="109738" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="695" r_length="211" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E410019" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108277" e_stop="108557"/>
          <exon e_start="108847" e_stop="109049"/>
          <exon e_start="109528" e_stop="109738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTAT</genome_strand>
        <mrna_strand>AAATGGAGCAGGTGGGCCAACCCAAAGGGCTTCAGCCTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTCCGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCCGCTGAGACTAATGGGTCAGAACCAGAGCAGGACGAGGGTGGAAATGAAAGCGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGGCGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTGTCGGATGAAGAATTCATGTCTGTACTTGGTATGAAAAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACCGATCTCTTCTAGACCCTGCATCGGAGAAAACAAATGGCCTCTCGGTATCTTCTTGTTGCAATTCTCGACATTCGTTCCCATGTTTCTTGCCAGGGCAACCTACTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275797" ref_strand="+" ref_description="SGN-E275797 [cLEN-18-B9]">
      <seq>tgggccaacccaaagggcttcagcgttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="107989" stop="109233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108289" g_stop="108557" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108847" g_stop="108933" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="356" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E275797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108289" e_stop="108557"/>
          <exon e_start="108847" e_stop="108933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGT</genome_strand>
        <mrna_strand>TGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367728" ref_strand="+" ref_description="SGN-E367728 [cLPT-14-O1]">
      <seq>gccaacccaaagggcttcagcgttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcccgctgaaactaatgggtcagaaccagagcaggatgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaagcggagagaggcctatctatcggatgaagaatttatgtctgtacttggtatgaaaaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="107992" stop="109920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108292" g_stop="108557" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108847" g_stop="109049" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="469" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109528" g_stop="109620" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="562" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E367728" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108292" e_stop="108557"/>
          <exon e_start="108847" e_stop="109049"/>
          <exon e_start="109528" e_stop="109620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAA</genome_strand>
        <mrna_strand>GCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCCGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGGAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAAAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244917" ref_strand="+" ref_description="SGN-E244917 [cLEF-2-C3]">
      <seq>caacccaaagggcttcagcgttagctgctttaaactcggctttcagttccccatctcccccaaaatctggttctgcaccgaggcctgctggagcaagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggtcagaaccagagcaggatgagggtggaaatgaaagtggtcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="107994" stop="109276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108294" g_stop="108557" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108847" g_stop="108976" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="394" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E244917" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108294" e_stop="108557"/>
          <exon e_start="108847" e_stop="108976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGC</genome_strand>
        <mrna_strand>CAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255884" ref_strand="+" ref_description="SGN-E255884 [cLEG-35-L17]">
      <seq>caagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggtcagaaccagagcaggatgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaagcgaagagaggcctatctatcggatgaagaatttatgtctgtacttggtatgaagaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaaaggaaaactgatctcttctagatcctgcatcggagaaaccaaatggcctgttgctatcttgttgttgcaattctcgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="108087" stop="109999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108387" g_stop="108557" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108847" g_stop="109049" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="374" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109528" g_stop="109699" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="546" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E255884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108387" e_stop="108557"/>
          <exon e_start="108847" e_stop="109049"/>
          <exon e_start="109528" e_stop="109699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACA</genome_strand>
        <mrna_strand>CAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264219" ref_strand="+" ref_description="SGN-E264219 [cLEG-70-M19]">
      <seq>caagtcaggcttcttcacaaagagcagctgcaatagctgcattatctaacgttcttacagctgagaaaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggtcagaaccagagcaggatgagggtggaaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="108087" stop="109266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108387" g_stop="108557" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108847" g_stop="108966" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="291" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E264219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108387" e_stop="108557"/>
          <exon e_start="108847" e_stop="108966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAA</genome_strand>
        <mrna_strand>CAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599643" ref_strand="-" ref_description="SGN-E599643 [52635]">
      <seq>gcattatctaacgttcttacagctgagaaaagcagtcgagtgagactggttctcctgtccaatcanacagaagttcacctgtccgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtgcaagattccgaaaaagtttcagaacctaaggagattgttgagcccgctgagactaatgggtcagaaccagagcaggacgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaagcggcgagaggcctatctatcggatgaagaattcatgtctgtacttggtatgaaaaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaaaggaaaaccgatctcttctagaccctgcatcggagaaaccaaatggcctctcgctatcttgttgttgcaattctcgacattcgttcccatgtttcttgccagggcaacctacttttataggtacatattgcctggattgtgtatgtagcattttttcgtttgcttctctcaatgaccatagctcttggtagttttattttttcgattatgtgatgcctgcttgaagtttggttttttttcgattggaaatcagcagtcaggttgattctttgatttgatcagtgtatccgagtttgtgttcattgaagtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="108125" stop="110236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108425" g_stop="108557" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108847" g_stop="109049" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="335" r_length="203" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109528" g_stop="109936" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="740" r_length="405" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E599643" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599643" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108425" e_stop="108557"/>
          <exon e_start="108847" e_stop="109049"/>
          <exon e_start="109528" e_stop="109936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTGGT-TTTTTTCGATTGGAAATCAGCAGTCAGGTGGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCAT</genome_strand>
        <mrna_strand>GCATTATCTAACGTTCTTACAGCTGAG-AAAAGCAGTCGAGTGAGACTGGTTCTCCTGTCCAATCANACAGAAGTTCACCTGTCCGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTGCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCCGCTGAGACTAATGGGTCAGAACCAGAGCAGGACGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGGCGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAATTCATGTCTGTACTTGGTATGAAAAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACCGATCTCTTCTAGACCCTGCATCGGAGAAACCAAATGGCCTCTCGCTATCTTGTTGTTGCAATTCTCGACATTCGTTCCCATGTTTCTTGCCAGGGCAACCTACTTTTATAGGTACATATTGCCTGGATTGTGTATGTAGCA--TTTTTTCGTTTGCTTCTCTCAATGACCATAGCTCTTGGTAGTTTTATTTTTTCGATTATGTGATGCCTGCTTGAAGTTTGGTTTTTTTTCGATTGGAAATCAGCAGTCA---GGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376657" ref_strand="+" ref_description="SGN-E376657 [TUS-18-K8]">
      <seq>aaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggtcagaaccagagcaggatgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaagcgaagagaggcctatctatcggatgaagaatttatgtctgtacttggtatgaagaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaaaggaaaactgatctcttctagatcctgcatcggagaaaccaaatggcctgttgctatcttgttgttgcaattctcgacatccgttcccatgtttcttgccagagcaacctacttttataggtacatattgcctggatcgtgtatgtagcattttttttcatttgcttctctcaatgaccatagctcctggtagttttatttttacgattttgtgatgcctgcttgaagtttggtttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="108153" stop="110159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108453" g_stop="108557" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108847" g_stop="109049" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="308" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109528" g_stop="109859" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="640" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E376657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108453" e_stop="108557"/>
          <exon e_start="108847" e_stop="109049"/>
          <exon e_start="109528" e_stop="109859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTGGTTTTTT</genome_strand>
        <mrna_strand>AAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTGGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231741" ref_strand="+" ref_description="SGN-E231741 [cLED-4-D22]">
      <seq>aaaagcagtcgagtgagagtggttctgctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctttcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggtcagaaccagagcaggatgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaagcgaagagaggcctatctatcggatgaagaatttatgtctgtacttggtatgaagaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaaaggaaaactgatctgttctagatcctgcatcggagaaaccaaatggcctgttgctatcttgttgttgcaattctcgacatccgttcccatgtttcttgccatagcaacctacttttataggtacatattgcctggatcgtgtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="108153" stop="110066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108453" g_stop="108557" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108847" g_stop="109049" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="308" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109528" g_stop="109766" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="547" r_length="239" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E231741" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108453" e_stop="108557"/>
          <exon e_start="108847" e_stop="109049"/>
          <exon e_start="109528" e_stop="109766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGT</genome_strand>
        <mrna_strand>AAAAGCAGTCGAGTGAGAGTGGTTCTGCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTTTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTGTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCATAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241136" ref_strand="+" ref_description="SGN-E241136 [cLED-26-H23]">
      <seq>aaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggtcagaaccagagcaggatgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaagcgaagagaggcctatctatcggatgaagaatttatgtctgtacttggtatgaagaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaaaggaaaactgatctcttctagatcctgcatcggagaaaccaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="108153" stop="109965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108453" g_stop="108557" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108847" g_stop="109049" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="308" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109528" g_stop="109665" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="446" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E241136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108453" e_stop="108557"/>
          <exon e_start="108847" e_stop="109049"/>
          <exon e_start="109528" e_stop="109665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATG</genome_strand>
        <mrna_strand>AAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241704" ref_strand="+" ref_description="SGN-E241704 [cLED-36-H3]">
      <seq>aaaagcagtcgagtgagagtggttctcctgtccaatcaaacagaagctcacctgtacgatcaagcagaagctctcctgttcgatcagtagactctggccctgctgaaagtgatctttctactgctgaggtccaagattccgaaaaagtttcagaacctaaggagattgttgagcctgctgaaactaatgggtcagaaccagagcaggatgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaagcgaagagaggcctatctatcggatgaagaatttatgtctgtacttggtatgaagaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaaaggaaaactgatctcttctagatcctgcatcggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="108153" stop="109955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108453" g_stop="108557" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108847" g_stop="109049" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="308" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109528" g_stop="109655" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="436" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E241704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108453" e_stop="108557"/>
          <exon e_start="108847" e_stop="109049"/>
          <exon e_start="109528" e_stop="109655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGGTATTAAAATCTGTTTTGCTCTTCCTTTTGCTATTATACCGACTTCAAAATCTCTTTTTTCTCTTAATCTTGTGCTTTTAATTCATAATTTTAAGTGCTTGTGCATGCATTTACATAAATTATTGTGCTTATGCTATCAGTTGATGTTATTGAGGGAAGTATTGACTGCATGAAAAGTGAAAGTTGACTGTTTCTATGGAAAATCAAATCATTCTACTTAAAATTACCTTTAAGTTCAGCTCTTTAAGTGGTTTGACATACCTGAATGTTTACTTTTCCACCAAAGCAGAAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAG</genome_strand>
        <mrna_strand>AAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG.................................................................................................................................................................................................................................................................................................AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418172" ref_strand="-" ref_description="SGN-E418172 [STM-27-C3]">
      <seq>agaaccagagcaggacgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctgtcaccgggattgattttaagcggcgagaggcctatctatcggatgaagaattcatgtctgtacttggtatgaaaaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaaaggaaaaccgatctcttctagaccctgcatcggagaaaccaaatggcctctcgctatcttcttgttgcaattctcgacattcgttcccatgtttcttgccagggcaacctacttttataggtacatattgcctggattgtgtatgtagcattttttcgtttgcttctctcaatgaccatagctcttggtagttttattttttcgattatgtgatgcctgcttgaagtttgtttttttttcgattggaaatcagcagtcaggttgattctttgatttgatcagtgtaccgagtttgtgttctttgaagtcatgtattttgttaattaaagggtgtatacattatgttgtaacctatacaaaaaggaatataacatttggagtttgccaattgccatcaagagacctatttggctgtgatcttgttttcattttttaaaaaaaaatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="108635" stop="110356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108935" g_stop="109049" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109528" g_stop="110012" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="594" r_length="479" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="653"/>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E418172" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418172" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108935" e_stop="109049"/>
          <exon e_start="109528" e_stop="110012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTG-GTTTTTTTCGATTGGAAATCAGCAGTCAGGTGGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCATGTATTTTGTTAATTAAAAGGGTGTATACATTATGTTGTAACCTATACAAAAAGGAATATAACATTTGGGGTTTGCC</genome_strand>
        <mrna_strand>AGAACCAGAGCAGGACGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGGCGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAATTCATGTCTGTACTTGGTATGAAAAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACCGATCTCTTCTAGACCCTGCATCGGAGAAACCAAATGGCCTCTCGCTATCTTCTTGTTGCAATTCTCGACATTCGTTCCCATGTTTCTTGCCAGGGCAACCTACTTTTATAGGTACATATTGCCTGGATTGTGTATGTAGCA--TTTTTTCGTTTGCTTCTCTCAATGACCATAGCTCTTGGTAGTTTTATTTTTTCGATTATGTGATGCCTGCTTGAAGTTTGTTTTTTTTTCGATTGGAAATCAGCAGTCA---GGTTGATTCTTTGATTTGATCAGTGTA-CCGAGTTTGTGTTCTTTGAAGTCATGTATTTTGTTAATT-AAAGGGTGTATACATTATGTTGTAACCTATACAAAAAGGAATATAACATTTGGAGTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561626" ref_strand="+" ref_description="SGN-E561626 [17780]">
      <seq>gccagagcaggacgagggtggaaatgaaagtggtcaagctatatttagttatgaacagctgaaggctaaatctgacaaccctggtcaccgggattgattttaagcggcgagaggcctatctatcggatgaagaattcatgtctgtacttggtatgaaaaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaaaggaaaaccgatctcttctagaccctgcatcggagaaaccaaatggcctctcgctatcttgttgttgcaattctcgacattcgttcccatgtttcttgccaggggcaacctacttttataggtacatattgcctggattgtgtatgtagcattttttcgtttgcttctctcaatgaccatagctcttggtagttttattttttcgattatgtgatgcctgcttgaagtttggttttttttcgattggaaatcagcagtcaggttgattctttgatttgatcagtgtatccgagtttgtgttcattgaagtcatgtattttgttaattaaagggtgtatacattatgttgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="108639" stop="110276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108938" g_stop="109049" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.907" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109528" g_stop="109976" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="558" r_length="445" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E561626" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108938" e_stop="109049"/>
          <exon e_start="109528" e_stop="109976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCT-GTCACCGGGATTGATTTTAAGCGAAGAGAGGTTTGTAGCTCAACCATTCTTTGGCATTCCTCATATGATGTAATTACTCCTATACATATCATATAACAAATAGTTCTCACAAGTCCATAAAATCAGTCGAATCTGAAGCCAATATCTCTTTGCACTAATACAATAAATACTCGAATACTTTTTAAGGCATAATACATAATCAAACATTCGACTTGGTCTCAACTGACAATTAAACACTTCAACTTGTCCCCACTGTTTCTCGTGGACTCCTGACGTTAACGTGACACATAAATTTTGGAGGTGTCTAGATAAGCATTTTGTGAGTTGGTGTTCAACTGGCTCTGTGGAGACAAGTTGAGGTGTTTAGAGGTGCATACTTAAAATTGGAGTGTTTTCTCGTCAGCTGAGGTCAAGTTCAAGTTTGAGTGTATGTTTTATGTATAATGCCTACTTTTAAGTCCTACAACATCGCTGAGCTCCATCTTTCTTTTCTGATATTCTCTTCCAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCA-GAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTGG-TTTTTTTCGATTGGAAATCAGCAGTCAGGTGGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCATGTATTTTGTTAATTAAAAGGGTGTATACATTATGTTGTAA</genome_strand>
        <mrna_strand>GCCAGAGCAGGACGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGGTCACCGGGATTGATTTTAAGCGGCGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCTATCGGATGAAGAATTCATGTCTGTACTTGGTATGAAAAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACCGATCTCTTCTAGACCCTGCATCGGAGAAACCAAATGGCCTCTCGCTATCTTGTTGTTGCAATTCTCGACATTCGTTCCCATGTTTCTTGCCAGGGGCAACCTACTTTTATAGGTACATATTGCCTGGATTGTGTATGTAGCA--TTTTTTCGTTTGCTTCTCTCAATGACCATAGCTCTTGGTAGTTTTATTTTTTCGATTATGTGATGCCTGCTTGAAGTTTGGTTTTTTTTCGATTGGAAATCAGCAGTCA---GGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCATGTATTTTGTTAATT-AAAGGGTGTATACATTATGTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250970" ref_strand="+" ref_description="SGN-E250970 [cLEG-13-N21]">
      <seq>tttttgatggcattccccaaatgttatattcctttttgtataggttacaacataaggtatacacccttttaattaacaaaatacatgacttcaatgaacacaaactcggatacactgatcaaatcaaagaatcaaccacctgactgctgatttccaatcgaaaaaaaccaaacttcaagcaggcatcacaaaatcgtaaaaataaaactaccaggagctatggtcattgagagaagcaaatgaaaaaaaatgctacatacacgatccaggcaatatgtacctataaaagtaggttgctctggcaagaaacatgggaacggatgtcgagaattgcaacaacaagatagcaacaggccatttggtttctccgatgcaggatctagaagagatcagttttccttttgtgcatatcttgtttccatttaggcaacttgtagaatgcttctttcttcataccaagtacagacataaaattctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="110319" stop="109244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110020" g_stop="109540" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E250970" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110020" e_stop="109540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGATGGCAAACCCCAAATGTTATATTCCTTTTTGTATAGGTTACAACATAATGTATACACCCTTTTAATTAACAAAATACATGACTTCAATGAACACAAACTCGGATACACTGATCAAATCAAAGAATCAACCACCTGACTGCTGATTTCCAATCGAAAAAAACCAAACTTCAAGCAGGCATCACAAAATCGTAAAAATAAAACTACCAGGAGCTATGGTCATTGAGAGAAGCAAATGAAAAAAAATGCTACATACACGATCCAGGCAATATGTACCTATAAAAGTAGGTTGCTCTGGCAAGAAACATGGGAACGGATGTCGAGAATTGCAACAACAAGATAGCAACAGGCCATTTGGTTTCTCCGATGCAGGATCTAGAAGAGATCAGTTTTCCTTTTGTGCATATCTTGTTTCCATTTAGGCAACTTGTAGAATGCTTCTTTCTTCATACCAAGTACAGACAT-AAATTCTTCATC</genome_strand>
        <mrna_strand>TTTTTGATGGCATTCCCCAAATGTTATATTCCTTTTTGTATAGGTTACAACATAAGGTATACACCCTTTTAATTAACAAAATACATGACTTCAATGAACACAAACTCGGATACACTGATCAAATCAAAGAATCAACCACCTGACTGCTGATTTCCAATCGAAAAAAACCAAACTTCAAGCAGGCATCACAAAATCGTAAAAATAAAACTACCAGGAGCTATGGTCATTGAGAGAAGCAAATGAAAAAAAATGCTACATACACGATCCAGGCAATATGTACCTATAAAAGTAGGTTGCTCTGGCAAGAAACATGGGAACGGATGTCGAGAATTGCAACAACAAGATAGCAACAGGCCATTTGGTTTCTCCGATGCAGGATCTAGAAGAGATCAGTTTTCCTTTTGTGCATATCTTGTTTCCATTTAGGCAACTTGTAGAATGCTTCTTTCTTCATACCAAGTACAGACATAAAATTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428181" ref_strand="+" ref_description="SGN-E428181 [STM-49-H24]">
      <seq>tccattttgtataggttacaacataatgtatacaccctttaattattttaatacatgacttcaatgaacacaaactcggatacactgatcaaatcaaagaatcaacctgactgctgatttccaatcgaaaaaaaaaacaaacttcaagcaggcatcacataatcgaaaaaataaaactaccaagagctatggtcattgagagaagcaaacgaaaaaatgctacatacacaatccaggcaatatgtacctataaaagtaggttgccctggcaagaaacatgggaacgaatgtcgagaattgcaacaagaagataccgagaggccatttggtttctccgatgcagggtctagaagagatcggttttccttttgtgcatatcttgtttccatttaggcaacttgtagaatgcttcttttttcataccaagtacagacatgaattcttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="110291" stop="109240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109991" g_stop="109540" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E428181" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109991" e_stop="109540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTTGTATAGGTTACAACATAATGTATACACCCTTTTAATTAACAAAATACATGACTTCAATGAACACAAACTCGGATACACTGATCAAATCAAAGAATCAACCACCTGACTGCTGATTTCCAATCG--AAAAAAACCAAACTTCAAGCAGGCATCACAAAATCGTAAAAATAAAACTACCAGGAGCTATGGTCATTGAGAGAAGCAAATGAAAAAAAATGCTACATACACGATCCAGGCAATATGTACCTATAAAAGTAGGTTGCTCTGGCAAGAAACATGGGAACGGATGTCGAGAATTGCAACAACAAGATAGCAACAGGCCATTTGGTTTCTCCGATGCAGGATCTAGAAGAGATCAGTTTTCCTTTTGTGCATATCTTGTTTCCATTTAGGCAACTTGTAGAATGCTTCTTTCTTCATACCAAGTACAGACATAAATTCTTCATC</genome_strand>
        <mrna_strand>TCCATTTTGTATAGGTTACAACATAATGTATACACCC-TTTAATTATTTTAATACATGACTTCAATGAACACAAACTCGGATACACTGATCAAATCAAAGAATC-A--ACCTGACTGCTGATTTCCAATCGAAAAAAAAAACAAACTTCAAGCAGGCATCACATAATCGAAAAAATAAAACTACCAAGAGCTATGGTCATTGAGAGAAGCAAACG--AAAAAATGCTACATACACAATCCAGGCAATATGTACCTATAAAAGTAGGTTGCCCTGGCAAGAAACATGGGAACGAATGTCGAGAATTGCAACAAGAAGATACCGAGAGGCCATTTGGTTTCTCCGATGCAGGGTCTAGAAGAGATCGGTTTTCCTTTTGTGCATATCTTGTTTCCATTTAGGCAACTTGTAGAATGCTTCTTTTTTCATACCAAGTACAGACATGAATTCTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253189" ref_strand="+" ref_description="SGN-E253189 [cLEG-26-O18]">
      <seq>ggtatgaagaaagaagcattctacaagttgcctaaatggaaacaagatatgcacaaaaggaaaactgatctcttctagatcctgcatcggagaaaccaaatggcctgttgctatcttgttgttgcaattctcgacatccgttcccatgtttcttgccagagcaacctacttttataggtacatattgcctggatcgtgtatgtagcattttttttcatttgcttctctcaatgaccatagctcctggtagttttatttttacgattttgtgatgcctgcttgaagtttggtttttttcgattggaaatcagcagtcaggtggttgattctttgatttgatcagtgtatccgagtttgtgttcattgaagtcatgtattttgttaattaaaagggtgtatacattatgttgtaacctatacaaaaaggaatataacatttggggtttgccatcaagagacctttgtggctctgctcttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="109264" stop="110345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109564" g_stop="110045" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E253189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109564" e_stop="110045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTGGTTTTTTTCGATTGGAAATCAGCAGTCAGGTGGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCATGTATTTTGTTAATTAAAAGGGTGTATACATTATGTTGTAACCTATACAAAAAGGAATATAACATTTGGGGTTTGCCATCAAGAGACCTTTGTGGCTCTGCTCTTGTTTT</genome_strand>
        <mrna_strand>GGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTGGTTTTTTTCGATTGGAAATCAGCAGTCAGGTGGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCATGTATTTTGTTAATTAAAAGGGTGTATACATTATGTTGTAACCTATACAAAAAGGAATATAACATTTGGGGTTTGCCATCAAGAGACCTTTGTGGCTCTGCTCTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376656" ref_strand="+" ref_description="SGN-E376656 [TUS-18-K8](-)">
      <seq>tccgttccccatgtttcttgccagagcaacctacttttataggtacatattgcctggatcgtgtatgtagcattttttttcatttgcttctctcaatgaccatagctcctggtagttttatttttacgattttgtgatgcctgcttgaagtttggtttttttcaattggaaatcagcagtcaggtggttgattctttgatttgatcagtgtatccgagtttgtgttcattgaagtcatgtattttgttaattaaaagggtgtatacattatgttgtaacctatacaaaaaggaatataacatttggggtttgccatcaagagacctttgtggctctgctcttgttttcgttttttaaacggttgtatcccaggccagcttgcatgcagctcgactattccaccgagggcgatgctttggttcctgaattacttataagttcacatattggccatagatatttatatcatatgtatttgaggtttgtttggttgctaaatcaaaaggacattgtatcaagagttaatctcttggtggtttgcaattccattattggagagttttgttgaacaactttgttaatgtttaatgatttacatttataattaagtggtgttgcttgtaacaattttttaaaatttttaattcttttggaatcaaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="109400" stop="110660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109700" g_stop="110357" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="672"/>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E376656" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109700" e_stop="110357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTT-CCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTGGTTTTTTTCGATTGGAAATCAGCAGTCAGGTGGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCATGTATTTTGTTAATTAAAAGGGTGTATACATTATGTTGTAACCTATACAAAAAGGAATATAACATTTGGGGTTTGCCATCAAGAGACCTTTGTGGCTCTGCTCTTGTTTTCGTTTTTTAAACGGTTGTATCCCAGGCCAGCTTGCATGCAGCTCGACTATTCCACCGAGGGCGATGCTTTGGTTCCTGAATTACTTATAAGTTCACATATTGGCCATAGATATTTATATCATATGTATTTGAGGTTTGTTTGGTTGCTAAATCAAAAGGACATTGTATCAAGAGTTAATCTCTTGGTGGTTTGCAATTCCATTATTGGAGAGTTTTGTTGAACAACTTTGTTAATGTTTAATGATTTACATTTATAATTAAGTGGTGTTGCTTGTAACAATTTTTTAAAATTTTTAATTCTTTTGGGATCAA</genome_strand>
        <mrna_strand>TCCGTTCCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTGGTTTTTTTCAATTGGAAATCAGCAGTCAGGTGGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCATGTATTTTGTTAATTAAAAGGGTGTATACATTATGTTGTAACCTATACAAAAAGGAATATAACATTTGGGGTTTGCCATCAAGAGACCTTTGTGGCTCTGCTCTTGTTTTCGTTTTTTAAACGGTTGTATCCCAGGCCAGCTTGCATGCAGCTCGACTATTCCACCGAGGGCGATGCTTTGGTTCCTGAATTACTTATAAGTTCACATATTGGCCATAGATATTTATATCATATGTATTTGAGGTTTGTTTGGTTGCTAAATCAAAAGGACATTGTATCAAGAGTTAATCTCTTGGTGGTTTGCAATTCCATTATTGGAGAGTTTTGTTGAACAACTTTGTTAATGTTTAATGATTTACATTTATAATTAAGTGGTGTTGCTTGTAACAATTTTTTAAAATTTTTAATTCTTTTGGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="112430" stop="113697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112730" g_stop="112834" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112835" i_stop="112986" i_length="152">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112987" g_stop="113397" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="515" r_length="410" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112730" e_stop="112834"/>
          <exon e_start="112987" e_stop="113397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGCATATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGCTGATTTTATGATATTGCTTAATGCATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGA........................................................................................................................................................ATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="112953" stop="113788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113253" g_stop="113488" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113253" e_stop="113488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGCTGATTTTATGATATTGCTTAATGCATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351546" ref_strand="+" ref_description="SGN-E351546 [cTOS-12-I18]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttggtatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="113113" stop="114449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113413" g_stop="114149" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E351546" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113413" e_stop="114149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAACAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAACTGGTTTTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGAAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTT-GAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTCCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACT</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGGTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATAATAGTAGTTATTG-A--------TTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGT-CAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTCTTGC-CAGATGGGTAGAACTAGAGCAACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356696" ref_strand="+" ref_description="SGN-E356696 [cTOS-21-K7]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacatangagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttgagtccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="113113" stop="114374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113413" g_stop="114074" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E356696" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113413" e_stop="114074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAACAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAACTGGTTTTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGAAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATAATAGTAGTTATTG-A--------TTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATANGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356206" ref_strand="+" ref_description="SGN-E356206 [cTOS-20-F19]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattagggtcgttggtctcatcacacaagaacaagtctagtagagtcttaagggacggtanggggacgcttttacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="113113" stop="114299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113413" g_stop="113999" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E356206" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113413" e_stop="113999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAACAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAACTGGTTTTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTC</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATAATAGTAGTTATTG-A--------TTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGGTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGGACGGTANGGGGACGCTTTTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="113622" stop="114507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113922" g_stop="114207" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113922" e_stop="114207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGAAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTCCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="114946" stop="113914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114646" g_stop="114214" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114646" e_stop="114214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGTCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTAGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGTTTGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCATGGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="113981" stop="115134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114281" g_stop="114834" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114281" e_stop="114834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCTACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGACTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGCCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGAAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="116191" stop="115265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115891" g_stop="115561" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115891" e_stop="115561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAATTTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="117111" stop="115833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116811" g_stop="116133" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116811" e_stop="116133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTGGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAATCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAA-GGGGTATAGAAATGGGGCGTGTG</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="117182" stop="116057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116882" g_stop="116357" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116882" e_stop="116357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTCACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTGGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAATCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="117111" stop="116153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116811" g_stop="116453" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116811" e_stop="116453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTGGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="-" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="118663" stop="117886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118363" g_stop="118187" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118363" e_stop="118187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="112430" stop="120901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119934" g_stop="120038" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120039" i_stop="120190" i_length="152">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120191" g_stop="120601" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="515" r_length="410" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119934" e_stop="120038"/>
          <exon e_start="120191" e_stop="120601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGCATATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGCTGATTTTATGATATTGCTTAATGCATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGA........................................................................................................................................................ATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="120157" stop="120992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120457" g_stop="120692" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120457" e_stop="120692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGCTGATTTTATGATATTGCTTAATGCATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542858" ref_strand="+" ref_description="SGN-E542858 [TUS-64-G1](-)">
      <seq>gaacagatttcacagaacagacacgttccttgctgaaaattgctataaaggaagtcaattttgattttcaaacactgaaaattttccttctcngtattatttttctctaaaaaaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgctgttctgaagtttgctgaagttaaagaagtttgagaaaaaaaaagactaactcaagtcaaacaaatgctggaatagtaagtgctgcaacaacatcggctgcacataatcattcagatgctatcttagcggcggctgagaaacctgcagagttttctggagtcgactttgagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcattaatgagaatgttcctgtttatcagatgaaactccggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgaacaacaatgccaaaacctcaaagaactcttggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggtaaaatttttggactataagatgatagacaataagactgtcgtcacccaagttcaagaattgcaggtcataatccatgatctgtgctgaatgtataaatttatttaatgcctatgttagaaatattaagttttcccttaataaatttatttaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="126810" stop="128234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127109" g_stop="127304" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127305" i_stop="127732" i_length="428">
            <donor d_prob="0.807" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127733" g_stop="128234" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="673" r_length="486" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="748" polyA_stop="757"/>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E542858" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127109" e_stop="127304"/>
          <exon e_start="127733" e_stop="128234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATC</genome_strand>
        <mrna_strand>GAACAGATTTCACAGAACAGACACGTTCCTTGCTGAAAATTGCTAT-AAAGGAAGTCAA-TTTTGA-TTTTCAAACACTGAAAA--TTTTCCTTCTCNGTATT-ATTTTTCTCT-AAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTGAAGTTTGCTGAAGTTAAAGAAGTTT--G............................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAAAAAAGACTAACTCAAGTCAAACAAATGCTGGAATAGTAAGTGCTGCAACAACATCGGCTGCACATAATCATTCAGATGCTATCTTAGCGGCGGCTGAGAAACCTGCAGAGTTTTCTGGAGTCGACTTTGAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTT-TATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGA-----AC-------A-A-CAATGCCAAAACCTC-AAAGAACTCTTGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGG-TAAAATTTTTGGACTATAAGATGATAGACAATAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262710" ref_strand="+" ref_description="SGN-E262710 [cLEG-63-E14]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="126828" stop="128040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127127" g_stop="127739" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E262710" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127127" e_stop="127739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369760" ref_strand="+" ref_description="SGN-E369760 [TUS-25-O3]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="126828" stop="128010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127127" g_stop="127710" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E369760" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127127" e_stop="127710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255327" ref_strand="+" ref_description="SGN-E255327 [cLEG-30-E2]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgatttttgaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="126828" stop="127947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127127" g_stop="127647" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E255327" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127127" e_stop="127647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTGAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="126828" stop="127654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127127" g_stop="127354" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127127" e_stop="127354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="126837" stop="127839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127137" g_stop="127539" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127137" e_stop="127539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGA</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254845" ref_strand="+" ref_description="SGN-E254845 [cLEG-33-L11]">
      <seq>aggaagtcaaattttgattttttaaacactgaaaatttggctttcggtgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtaccagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagaataaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagaattgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="126858" stop="128043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127158" g_stop="127757" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E254845" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127158" e_stop="127757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTA-CAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTC</genome_strand>
        <mrna_strand>AGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTGGCTTTCGGTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACCAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGAATAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGAATTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273518" ref_strand="+" ref_description="SGN-E273518 [cLEN-6-E15]">
      <seq>ggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="126859" stop="128121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127159" g_stop="127821" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E273518" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127159" e_stop="127821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGC</genome_strand>
        <mrna_strand>GGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="126892" stop="127781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127192" g_stop="127526" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127192" e_stop="127526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCT</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTG-----G-TTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263584" ref_strand="+" ref_description="SGN-E263584 [cLEG-60-L13]">
      <seq>tgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="126959" stop="128234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127259" g_stop="127973" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E263584" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127259" e_stop="127973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACG</genome_strand>
        <mrna_strand>TGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261066" ref_strand="+" ref_description="SGN-E261066 [cLEG-65-C11]">
      <seq>tttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcataaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagatttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="126999" stop="128234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127299" g_stop="128012" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E261066" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127299" e_stop="128012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</genome_strand>
        <mrna_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCATAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGATTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276669" ref_strand="+" ref_description="SGN-E276669 [cLEN-14-A16]">
      <seq>ttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="127000" stop="128234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127300" g_stop="127942" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E276669" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127300" e_stop="127942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTG</genome_strand>
        <mrna_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253427" ref_strand="+" ref_description="SGN-E253427 [cLEG-24-L5]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctggttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="127116" stop="128234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127416" g_stop="128034" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E253427" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127416" e_stop="128034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTG-----G-TTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375521" ref_strand="+" ref_description="SGN-E375521 [TUS-34-B10]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="127116" stop="127910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127416" g_stop="127611" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E375521" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127416" e_stop="127611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAA-ATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262550" ref_strand="+" ref_description="SGN-E262550 [cLEG-63-C22]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctgggacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaactgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaattatattttgagtggtctgcaagatgatctgtancatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaacagaagatgccggaaatgagaaaatcattgtgggcaaatttctagacttttagatgatagacagtaagactgtcgtcacccaagtttcagaattgcaggttataatccatgatctccttgctgaaaggatgattgtgaatgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="127235" stop="128234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127535" g_stop="128234" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E262550" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127535" e_stop="128234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGATG-CAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATC</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAA-CTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGT-AAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTANCATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTAC-AAACAGAAGATGCCGGAAATGAGAAAATCATTGTGG-GCAAATTTCTAGACTTTTAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTTCAGAATTGCAGGTTATAATCCATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0143K21-jeIHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0143K21.1" temp_strand="+" temp_description="C04SLm0143K21.1  CU074337.8 htgs_phase:3 submitted_to_sgn_as:C04SLm0143K21 sequenced_by:sanger upload_account_name:uk">
        <position start="127235" stop="128234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127535" g_stop="127980" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0143K21.1" gen_strand="+" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0143K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127535" e_stop="127980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTG</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>142</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="41889" PGL_stop="2020"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41889" e_stop="41559"/>
            <exon e_start="22110" e_stop="21716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.973"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="41889" e_stop="41559" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41558" i_stop="22111" i_length="19448"/>
          </intron>
          <exon e_serial="2" e_score="0.909">
            <gDNA_exon_boundary e_start="22110" e_stop="21716" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41889" stop="41559"/>
              <exon start="22110" stop="21716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41889" stop="41559"/>
              <exon start="22110" stop="21791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41889" stop="41559"/>
              <exon start="22110" stop="21865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAATCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCGGGTTTTGGGAATAATAGATGTTGAAT : AATAATAGTTATTGATTTTATTTATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGACCCGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACC</gDNA_template>
            <first_frame> L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  P  S  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  K  P  I  F  V  T  P  D  L  Q  G  E  L  T  L  L  A  W  T  G  S  S  P  S  C  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  S  *  K  L  L  E  L  V  V  *  S  R  C  S  C  D  D  D  F  R  V  L  G  I  I  D  V  E   : *  *  *  L  L  I  L  F  M  S  L  S  L  P  H  Y  F  M  L  I  L  H  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  T  R  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  L  S  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T </first_frame>
            <second_frame>  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  F  L  L  V  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  R  F  *  L  G  L  D  L  L  L  H  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  R  N  S  *  N  *  *  F  K  V  D  V  L  V  M  M  T  S  G  F  W  E  *  *  M  L  N  :  N  N  S  Y  *  F  Y  L  *  V  *  V  F  R  I  T  L  C  *  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  P  D  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  M  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q   </second_frame>
            <third_frame>   G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  S  F  L  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  Q  A  N  L  R  H  T  G  S  S  G  *  A  N  A  S  S  L  D  W  I  F  S  F  M  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  L  E  T  L  R  I  S  S  L  K  *  M  F  L  *  *  *  L  P  G  F  G  N  N  R  C  *  I :   I  I  V  I  D  F  I  Y  E  F  K  S  S  A  L  L  Y  V  D  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  D  P  I  W  V  V  T  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  C  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0143K21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15780" e_stop="15300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="15780" e_stop="15300" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15780" stop="15543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15779" stop="15300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGTTCCGACACATAGTAGTAGGGGATCAGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGTGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTTAAAGATGGTAATATACTCAATGTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATTGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATCTCTATTTTGAGTTGGCCAATGATATCTACTCAGTACCCGTGTTTGGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAATTCTAGCCAGTCTTCATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  S  D  T  *  *  *  G  I  R  V  S  R  T  D  T  R  G  L  M  N  M  R  E  W  S  V  T  C  R  H  K  R  N  K  D  N  E  S  L  K  M  V  I  Y  S  M  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  C  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  I  D  L  Y  F  E  L  A  N  D  I  Y  S  V  P  V  F  G  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  </first_frame>
            <second_frame>  H  V  P  T  H  S  S  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  A  D  T  R  E  I  K  I  M  N  L  *  R  W  *  Y  T  Q  C  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  L  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  I  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T </second_frame>
            <third_frame>   T  F  R  H  I  V  V  G  D  Q  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  V  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  F  K  D  G  N  I  L  N  V  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  L  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  Y  *  S  L  F  *  V  G  Q  *  Y  L  L  S  T  R  V  W  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15558" stop="15322"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCTCCCYMLSIIVDFMILLGIYIDLYFELANDIYSVPVFGTDPYFYVFFLFICGVQQTCRHLRLNSNSSQSSLLRISG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15509" stop="15300"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYLVYILISILSWPMISTQYPCLVLTPTFMFSSCLFVECSKRAVIFDSTVILASLHYSGYQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34651" e_stop="34586"/>
            <exon e_start="33566" e_stop="32945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.894"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="34651" e_stop="34586" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34585" i_stop="33567" i_length="1019"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="33566" e_stop="32945" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34651" stop="34586"/>
              <exon start="33566" stop="32945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34651" stop="34586"/>
              <exon start="33566" stop="32960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333574" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAGCCATTCGAAAACCTCCAAAGGATTCATCTAAGTTTTAAAAAAAGTTAACAACAAAACAAAG : AAATCATACTATCAAATATTAAAACGACATGCATATCCTGAAGCATTTAATTCAAAATCTAACAGAAAGGAAAGCAACCAGCAACGTCTGGGGAAAAAACATGGTTATGTAATATTGCTAAGGTATGCACAACTATGGATCAAAGAAGCTAAGGTAGGAAATAAAGACATTTTTCATATCAATAGCAATCAAAACGTTTTGAAGACAATAAGAAAGCAACCCAACAACTAATTTTCACCTTAATATAACAAAACAGCAGTTGCACAACCTAGTATTTATAAAACAGATACGAGAAATCAGGCTTTGGCAAAAGGCGAGGTGATAATCTTTATGCAGAACACAACAACTTAAGGCAAAAAAAAAACCAACTATATCGCACAAATTTCCAACCGAATAGAGATAATAGTAAGTGGAAACACATGTATGGATTTATGAACTTGATGAAATAAAGAATCACATTGACATGGAAAATAACTTTCAGCAGAGCAAAACATTTGAACTCCTTCAAAATTTACTTAACTTTAAGAAGACTTCCACTGTCATTCACACCACTAATCATATTGAATCTAAACAAATAACAACTCTAGAATGCAACACTGACAAAGGGCAAGAAGATTACCTG</gDNA_template>
            <first_frame> N  S  H  S  K  T  S  K  G  F  I  *  V  L  K  K  V  N  N  K  T  K  :  K  S  Y  Y  Q  I  L  K  R  H  A  Y  P  E  A  F  N  S  K  S  N  R  K  E  S  N  Q  Q  R  L  G  K  K  H  G  Y  V  I  L  L  R  Y  A  Q  L  W  I  K  E  A  K  V  G  N  K  D  I  F  H  I  N  S  N  Q  N  V  L  K  T  I  R  K  Q  P  N  N  *  F  S  P  *  Y  N  K  T  A  V  A  Q  P  S  I  Y  K  T  D  T  R  N  Q  A  L  A  K  G  E  V  I  I  F  M  Q  N  T  T  T  *  G  K  K  K  T  N  Y  I  A  Q  I  S  N  R  I  E  I  I  V  S  G  N  T  C  M  D  L  *  T  *  *  N  K  E  S  H  *  H  G  K  *  L  S  A  E  Q  N  I  *  T  P  S  K  F  T  *  L  *  E  D  F  H  C  H  S  H  H  *  S  Y  *  I  *  T  N  N  N  S  R  M  Q  H  *  Q  R  A  R  R  L  P  </first_frame>
            <second_frame>  I  A  I  R  K  P  P  K  D  S  S  K  F  *  K  K  L  T  T  K  Q  R :   N  H  T  I  K  Y  *  N  D  M  H  I  L  K  H  L  I  Q  N  L  T  E  R  K  A  T  S  N  V  W  G  K  N  M  V  M  *  Y  C  *  G  M  H  N  Y  G  S  K  K  L  R  *  E  I  K  T  F  F  I  S  I  A  I  K  T  F  *  R  Q  *  E  S  N  P  T  T  N  F  H  L  N  I  T  K  Q  Q  L  H  N  L  V  F  I  K  Q  I  R  E  I  R  L  W  Q  K  A  R  *  *  S  L  C  R  T  Q  Q  L  K  A  K  K  K  P  T  I  S  H  K  F  P  T  E  *  R  *  *  *  V  E  T  H  V  W  I  Y  E  L  D  E  I  K  N  H  I  D  M  E  N  N  F  Q  Q  S  K  T  F  E  L  L  Q  N  L  L  N  F  K  K  T  S  T  V  I  H  T  T  N  H  I  E  S  K  Q  I  T  T  L  E  C  N  T  D  K  G  Q  E  D  Y  L </second_frame>
            <third_frame>   *  P  F  E  N  L  Q  R  I  H  L  S  F  K  K  S  *  Q  Q  N  K   : E  I  I  L  S  N  I  K  T  T  C  I  S  *  S  I  *  F  K  I  *  Q  K  G  K  Q  P  A  T  S  G  E  K  T  W  L  C  N  I  A  K  V  C  T  T  M  D  Q  R  S  *  G  R  K  *  R  H  F  S  Y  Q  *  Q  S  K  R  F  E  D  N  K  K  A  T  Q  Q  L  I  F  T  L  I  *  Q  N  S  S  C  T  T  *  Y  L  *  N  R  Y  E  K  S  G  F  G  K  R  R  G  D  N  L  Y  A  E  H  N  N  L  R  Q  K  K  N  Q  L  Y  R  T  N  F  Q  P  N  R  D  N  S  K  W  K  H  M  Y  G  F  M  N  L  M  K  *  R  I  T  L  T  W  K  I  T  F  S  R  A  K  H  L  N  S  F  K  I  Y  L  T  L  R  R  L  P  L  S  F  T  P  L  I  I  L  N  L  N  K  *  Q  L  *  N  A  T  L  T  K  G  K  K  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34615" stop="34586"/>
                    <exon start="33566" stop="33336"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLKKVNNKTKKSYYQILKRHAYPEAFNSKSNRKESNQQRLGKKHGYVILLRYAQLWIKEAKVGNKDIFHINSNQNVLKTIRKQPNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33157" stop="32945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VETHVWIYELDEIKNHIDMENNFQQSKTFELLQNLLNFKKTSTVIHTTNHIESKQITTLECNTDKGQEDYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="39361" e_stop="38976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39361" e_stop="38976" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39361" stop="38976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39361" stop="38995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGAACCACAATAGCAATTTTTGCCCTTTTCATTGTTTTATCATCACTTTGCTTCAACCCAATTAATAGCTCAAGGGATATTTCTTTTGATAATCCATTAACACAGAGAAACCTCTTATCCCAAAAGACAAGTGATATTCATCCTGATGTTGCTGCCAATTGTAGAATTTGTATGGAACAATGTGGATCTTGTACTTGTTGCATTGCAAAATTGAAGCATTAATTAATATTACTTATGTTGTAAAACTATATTGTTGTTTGTATTGTTTCTAGTACGACTTTTTTTATTATTGTATTTGAATTTAATATGTTTTATGTGAGCGGAGAGTCTATCAGAAATAACTTCTCTATCTTCACAAGATAGAAGTAAGATTAAATACACAAA</gDNA_template>
            <first_frame> Q  E  P  Q  *  Q  F  L  P  F  S  L  F  Y  H  H  F  A  S  T  Q  L  I  A  Q  G  I  F  L  L  I  I  H  *  H  R  E  T  S  Y  P  K  R  Q  V  I  F  I  L  M  L  L  P  I  V  E  F  V  W  N  N  V  D  L  V  L  V  A  L  Q  N  *  S  I  N  *  Y  Y  L  C  C  K  T  I  L  L  F  V  L  F  L  V  R  L  F  L  L  L  Y  L  N  L  I  C  F  M  *  A  E  S  L  S  E  I  T  S  L  S  S  Q  D  R  S  K  I  K  Y  T   </first_frame>
            <second_frame>  K  N  H  N  S  N  F  C  P  F  H  C  F  I  I  T  L  L  Q  P  N  *  *  L  K  G  Y  F  F  *  *  S  I  N  T  E  K  P  L  I  P  K  D  K  *  Y  S  S  *  C  C  C  Q  L  *  N  L  Y  G  T  M  W  I  L  Y  L  L  H  C  K  I  E  A  L  I  N  I  T  Y  V  V  K  L  Y  C  C  L  Y  C  F  *  Y  D  F  F  Y  Y  C  I  *  I  *  Y  V  L  C  E  R  R  V  Y  Q  K  *  L  L  Y  L  H  K  I  E  V  R  L  N  T  Q  </second_frame>
            <third_frame>   R  T  T  I  A  I  F  A  L  F  I  V  L  S  S  L  C  F  N  P  I  N  S  S  R  D  I  S  F  D  N  P  L  T  Q  R  N  L  L  S  Q  K  T  S  D  I  H  P  D  V  A  A  N  C  R  I  C  M  E  Q  C  G  S  C  T  C  C  I  A  K  L  K  H  *  L  I  L  L  M  L  *  N  Y  I  V  V  C  I  V  S  S  T  T  F  F  I  I  V  F  E  F  N  M  F  Y  V  S  G  E  S  I  R  N  N  F  S  I  F  T  R  *  K  *  D  *  I  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39359" stop="39138"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTTIAIFALFIVLSSLCFNPINSSRDISFDNPLTQRNLLSQKTSDIHPDVAANCRICMEQCGSCTCCIAKLKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="10741" e_stop="10082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="10741" e_stop="10082" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10741" stop="10082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATCCTGGCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTTTTGATTTACATTGTGATTTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGGCTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCCTAGAAATGGTTGACTTCGATGTATTTCTGGGTATGACTTGGCTTTCTCTAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAACGTTGTCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGTGATTACACTTCCACTCCAATTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTACTCTCCCCATTTCATATCCCCTTATAGAATGACTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAACTTTAAGAGTTGTTAGGCAAAGGCTTCATTAGACCAAGTGCTTCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  F  D  L  H  C  D  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  A  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  F  L  G  M  T  W  L  S  L  N  F  A  I  L  D  C  N  A  K  T  V  T  L  S  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  I  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  L  P  I  S  Y  P  L  I  E  *  L  P  L  S  *  G  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  L  P  L  G </first_frame>
            <second_frame>  L  I  L  A  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  I  V  I  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  W  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  Y  F  W  V  *  L  G  F  L  *  I  L  Q  S  *  I  V  M  L  K  L  *  R  C  P  S  L  G  Q  I  R  *  Y  G  R  V  I  T  L  P  L  Q  F  V  S  S  P  F  F  V  L  R  E  W  L  V  K  G  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  G  I  L  T  F  A  L  I  W  S  R  V  L  S  P  F  H  I  P  L  *  N  D  S  R  *  V  K  G  V  K  G  P  T  L  R  V  V  R  Q  R  L  H  *  T  K  C  F  P  L   </second_frame>
            <third_frame>   *  S  W  L  H  I  F  I  C  I  F  L  I  C  Y  W  F  *  F  T  L  *  F  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  G  F  C  G  E  Q  Y  S  C  R  L  G  Y  P  R  N  G  *  L  R  C  I  S  G  Y  D  L  A  F  S  K  F  C  N  L  R  L  *  C  *  N  C  N  V  V  Q  A  W  D  R  S  V  S  M  G  G  *  L  H  F  H  S  N  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  D  S  P  *  V  S  G  C  V  S  C  R  P  S  W  Y  A  T  G  *  G  Y  *  L  L  H  *  S  G  A  G  Y  S  P  H  F  I  S  P  Y  R  M  T  P  A  E  L  R  E  L  K  A  Q  L  *  E  L  L  G  K  G  F  I  R  P  S  A  S  P  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10741" stop="10166"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGFDLHCDLLDMPIRVSTPVGESVIVEKVYRSCLVAFVGSNTHVDLVILEMVDFDVFLGMTWLSLNFAILDCNAKTVTLSKPGTDPLVWEGDYTSTPIRIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPGTLPISYPLIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="12002" e_stop="11351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="12002" e_stop="11351" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12002" stop="11351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGATTAACCAGGTTCTTGCTTATCTTAGCGGGTAATCCGATCAAGGCCAAACGCCTCCAGTGTTTTCTGCACTAGCACCGTAGGTTCCGGGAGTACAACATGCAGCTGCTATGGCTCCCCGCATGGATGCCTCATTAGAAATAAGAACGTTTCCTCGATTGACTACAGGGCCTATAATGACGAGTAATCAACACGAACTTTTCATGAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATAATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGGCATAGTGGAACAGGTGTTGAGTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACATGCACCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATACCCCGGACCTTGAGGGATAGGAGGAGGGATGAATTCCTGAGCCTAGAGCAAGGCAGGATGTCTGTTACTGATTATGAGGATAAGTTTCGTGCATTATCCAGGCATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTAGCA</gDNA_template>
            <first_frame> R  *  L  T  R  F  L  L  I  L  A  G  N  P  I  K  A  K  R  L  Q  C  F  L  H  *  H  R  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  *  K  *  E  R  F  L  D  *  L  Q  G  L  *  *  R  V  I  N  T  N  F  S  *  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  I  I  F  W  L  I  V  M  S  C  Y  I  R  W  A  *  W  N  R  C  *  V  C  N  L  S  V  S  G  K  C  Q  N  V  V  A  I  V  C  *  V  S  T  S  T  C  T  T  Y  D  L  G  I  I  L  *  L  V  Y  G  E  V  Y  T  P  D  L  E  G  *  E  E  G  *  I  P  E  P  R  A  R  Q  D  V  C  Y  *  L  *  G  *  V  S  C  I  I  Q  A  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  G  I  E  V  R  F  A  D  S  S  L  T  G  S  </first_frame>
            <second_frame>  D  D  *  P  G  S  C  L  S  *  R  V  I  R  S  R  P  N  A  S  S  V  F  C  T  S  T  V  G  S  G  S  T  T  C  S  C  Y  G  S  P  H  G  C  L  I  R  N  K  N  V  S  S  I  D  Y  R  A  Y  N  D  E  *  S  T  R  T  F  H  E  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  A  T  *  D  G  H  S  G  T  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  H  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  T  D  Y  E  D  K  F  R  A  L  S  R  H  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  A </second_frame>
            <third_frame>   M  I  N  Q  V  L  A  Y  L  S  G  *  S  D  Q  G  Q  T  P  P  V  F  S  A  L  A  P  *  V  P  G  V  Q  H  A  A  A  M  A  P  R  M  D  A  S  L  E  I  R  T  F  P  R  L  T  T  G  P  I  M  T  S  N  Q  H  E  L  F  M  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  N  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  Q  V  L  S  L  *  P  I  S  F  R  E  M  P  K  C  G  G  D  R  M  L  S  V  N  Q  H  M  H  H  L  *  L  G  H  H  S  L  A  C  L  W  R  S  I  Y  P  G  P  *  G  I  G  G  G  M  N  S  *  A  *  S  K  A  G  C  L  L  L  I  M  R  I  S  F  V  H  Y  P  G  M  P  P  S  F  A  S  V  H  K  S  G  F  A  V  L  *  R  D  *  G  Q  I  C  R  F  Q  P  Y  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11701" stop="11351"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGHSGTGVEFVTYQFQGNAKMWWRSYVECQPAHAPPMTWASFSSLFMEKYIPRTLRDRRRDEFLSLEQGRMSVTDYEDKFRALSRHATQLCFSPQERIRRFVKGLRSDLQIPALQVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="16240" e_stop="15837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="16240" e_stop="15837" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16240" stop="15837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  T  L  I  S  L  L  I  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  Q  T  D  T  *  I  *  G  I  G  C  H  E  P  T   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  P  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  K  P  T  R  R  F  R  G  S  G  V  T  N  R  H  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  N  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0143K21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="20980" e_stop="20808"/>
            <exon e_start="20063" e_stop="19537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.954"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="20980" e_stop="20808" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20807" i_stop="20064" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="20063" e_stop="19537" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20980" stop="20808"/>
              <exon start="20063" stop="19537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAAGTAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCTGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCTTATAGAATGGCTCCCACGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTCGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGTATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  I  A  D  F  S  L  T  S  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  Y  R  M  A  P  T  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  L  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  S  *  R  R  R  M  G  V  F  G  C  V  *  T  T </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  N  C  G  F  Q  P  Y  K  *  R  L  R  Q  N  P  S  K  :  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  C  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  *  N  G  S  H  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  R  K  E  E  G  W  E  F  S  D  V  Y  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20979" stop="20808"/>
                    <exon start="20063" stop="19666"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWLSLQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPLIEWLPRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="21607" e_stop="21054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="21607" e_stop="21054" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21607" stop="21054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGATTTTAGAGGTACAACATGCAGCCACTATGTCTCCTCGTATGGATGCCTCATTGGACATGGGCACGTTTTCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGATACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  A  K  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  F  C  T  N  T  S  D  F  R  G  T  T  C  S  H  Y  V  S  S  Y  G  C  L  I  G  H  G  H  V  F  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  *  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  D  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  C  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  L  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  I  L  E  V  Q  H  A  A  T  M  S  P  R  M  D  A  S  L  D  M  G  T  F  S  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  I  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  C  K  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  V  G  C  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  *  R  Y  N  M  Q  P  L  C  L  L  V  W  M  P  H  W  T  W  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  L  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  R  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  M  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21606" stop="21055"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPSDTRAVTPPPTEEVVREGEEGETEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPILEVQHAATMSPRMDASLDMGTFSRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHEILHKMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="22730" e_stop="22493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="22730" e_stop="22493" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22730" stop="22493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="10" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGTTCCGACACATAGTTGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGGTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCATCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTT</gDNA_template>
            <first_frame> S  R  S  D  T  *  L  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  C  R  H  K  R  N  K  D  N  E  S  *  K  M  V  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  I  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  </first_frame>
            <second_frame>  H  V  P  T  H  S  C  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  A  D  T  R  E  I  K  I  M  N  L  E  R  W  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  A  V </second_frame>
            <third_frame>   T  F  R  H  I  V  V  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  G  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  H  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0143K21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="24296" e_stop="24166"/>
            <exon e_start="2877" e_stop="2785"/>
            <exon e_start="2084" e_stop="2020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.746" e_score="0.847"/>
          <exon-intron don_prob="0.970" acc_prob="0.474" e_score="0.946"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.847">
            <gDNA_exon_boundary e_start="24296" e_stop="24166" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.746">
            <gDNA_intron_boundary i_start="24165" i_stop="2878" i_length="21288"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="2877" e_stop="2785" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.474">
            <gDNA_intron_boundary i_start="2784" i_stop="2085" i_length="700"/>
          </intron>
          <exon e_serial="3" e_score="0.954">
            <gDNA_exon_boundary e_start="2084" e_stop="2020" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24296" stop="24166"/>
              <exon start="2877" stop="2785"/>
              <exon start="2084" stop="2020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468297" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="11" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTCCAATGGTGCGAGCTTTTATTATATTTGTACTGATGCTACTCTTAACTTATATAGTCTCATCACGCTTCATCATTGAGACTCTTTCGAAATTCGATGGACAATTTCCATTTAAACTTGATACATG : AATCTGAGAGGGACCCACAAAATGATCCTCTCATAATTTGGCTCACTGGAGGTCCTGGTTGCTCTGGTCTATCTACCTTTCTAAATGAATTTG : GCCCTTTTACCTTTGATTATGCAAATTCTAGTGGAAATTTCCCTAAATTGGAGTTGAACTTACAT</gDNA_template>
            <first_frame> S  T  P  M  V  R  A  F  I  I  F  V  L  M  L  L  L  T  Y  I  V  S  S  R  F  I  I  E  T  L  S  K  F  D  G  Q  F  P  F  K  L  D  T  * :   I  *  E  G  P  T  K  *  S  S  H  N  L  A  H  W  R  S  W  L  L  W  S  I  Y  L  S  K  *  I  W :   P  F  Y  L  *  L  C  K  F  *  W  K  F  P  *  I  G  V  E  L  T  </first_frame>
            <second_frame>  Q  L  Q  W  C  E  L  L  L  Y  L  Y  *  C  Y  S  *  L  I  *  S  H  H  A  S  S  L  R  L  F  R  N  S  M  D  N  F  H  L  N  L  I  H   : E  S  E  R  D  P  Q  N  D  P  L  I  I  W  L  T  G  G  P  G  C  S  G  L  S  T  F  L  N  E  F   : G  P  F  T  F  D  Y  A  N  S  S  G  N  F  P  K  L  E  L  N  L  H </second_frame>
            <third_frame>   N  S  N  G  A  S  F  Y  Y  I  C  T  D  A  T  L  N  L  Y  S  L  I  T  L  H  H  *  D  S  F  E  I  R  W  T  I  S  I  *  T  *  Y  M  :  N  L  R  G  T  H  K  M  I  L  S  *  F  G  S  L  E  V  L  V  A  L  V  Y  L  P  F  *  M  N  L  :  A  L  L  P  L  I  M  Q  I  L  V  E  I  S  L  N  W  S  *  T  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="11" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24235" stop="24166"/>
                    <exon start="2877" stop="2785"/>
                    <exon start="2084" stop="2020"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHHASSLRLFRNSMDNFHLNLIHESERDPQNDPLIIWLTGGPGCSGLSTFLNEFGPFTFDYANSSGNFPKLELNLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="12">
          <exon_coordinates>
            <exon e_start="34167" e_stop="33861"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="34167" e_stop="33861" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34167" stop="33861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="12" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCTCATGCAGAGTAGAGAAAAGGAAGAAAAGATAAGAATTAGAATCAATCATAAATAATATTAATCTAAGCCAGTGAACATTCAAAACTAGATAACATATCTCAAATAAACAGTTTAAGACACAAAATGGAAAGGAACTTTAAATGAGCTCACATTAAAAATCAAAATGAGACCAACATCTATTTGAGAAGCAAAGAAACCTTGAGATAATTTGAATTACACGGGGCATTTAAAAAGAAAACAAATCGACTAGACCTAAAAGAGAATAATATCTAACATAAGAACAAACAAGAGGCTTCTTATCC</gDNA_template>
            <first_frame> V  L  M  Q  S  R  E  K  E  E  K  I  R  I  R  I  N  H  K  *  Y  *  S  K  P  V  N  I  Q  N  *  I  T  Y  L  K  *  T  V  *  D  T  K  W  K  G  T  L  N  E  L  T  L  K  I  K  M  R  P  T  S  I  *  E  A  K  K  P  *  D  N  L  N  Y  T  G  H  L  K  R  K  Q  I  D  *  T  *  K  R  I  I  S  N  I  R  T  N  K  R  L  L  I  </first_frame>
            <second_frame>  C  S  C  R  V  E  K  R  K  K  R  *  E  L  E  S  I  I  N  N  I  N  L  S  Q  *  T  F  K  T  R  *  H  I  S  N  K  Q  F  K  T  Q  N  G  K  E  L  *  M  S  S  H  *  K  S  K  *  D  Q  H  L  F  E  K  Q  R  N  L  E  I  I  *  I  T  R  G  I  *  K  E  N  K  S  T  R  P  K  R  E  *  Y  L  T  *  E  Q  T  R  G  F  L  S </second_frame>
            <third_frame>   A  H  A  E  *  R  K  G  R  K  D  K  N  *  N  Q  S  *  I  I  L  I  *  A  S  E  H  S  K  L  D  N  I  S  Q  I  N  S  L  R  H  K  M  E  R  N  F  K  *  A  H  I  K  N  Q  N  E  T  N  I  Y  L  R  S  K  E  T  L  R  *  F  E  L  H  G  A  F  K  K  K  T  N  R  L  D  L  K  E  N  N  I  *  H  K  N  K  Q  E  A  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0143K21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8640" PGL_stop="9225"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8640" e_stop="9225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="8640" e_stop="9225" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8640" stop="9225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8640" stop="9225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8640" stop="9192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCTGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTTCTCATCAATTTTTGCTTCTTTAGCCTCTCCACGCGATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAACTGCTTTCCCTTAATCTTGTCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAGCCTCATATAGTCATTAGCTAGAGTCTGAACCTCTCTAGCCAATGAGCGTTTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTTCATGCCTTTCTATTTAAAGCATCCGCCACAACATAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTTAGTAGTTCCATCCACCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACTGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</gDNA_template>
            <first_frame> P  L  *  E  *  C  E  S  N  H  R  R  G  V  H  I  P  F  P  *  F  S  K  H  L  S  H  Q  F  L  L  L  *  P  L  H  A  I  P  Y  L  E  S  G  S  V  S  H  Q  *  T  A  F  P  *  S  C  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  L  V  L  P  A  S  Y  S  H  *  L  E  S  E  P  L  *  P  M  S  V  *  K  P  A  S  E  L  D  F  P  C  F  M  P  F  Y  L  K  H  P  P  Q  H  S  L  S  R  M  I  Q  D  S  D  I  I  V  L  *  *  F  H  P  P  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  R  I  D  F  T  L  N  P  I  *  I  M  S  P  L  L  *  C  K  H  Y  C  S  Q  L  Q  I  V  G  R  I  I  T  F  M  H  L  *  L  </first_frame>
            <second_frame>  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  N  T  F  L  I  N  F  C  F  F  S  L  S  T  R  Y  L  I  S  N  P  D  Q  F  L  I  S  K  L  L  S  L  N  L  V  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  *  Y  F  Q  P  H  I  V  I  S  *  S  L  N  L  S  S  Q  *  A  F  R  N  L  Q  V  S  *  T  S  H  A  S  C  L  S  I  *  S  I  R  H  N  I  A  F  P  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  R  S  C  T  F  N  C </second_frame>
            <third_frame>   S  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  F  S  S  I  F  A  S  L  A  S  P  R  D  T  L  S  R  I  R  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  S  T  S  S  L  I  *  S  L  A  R  V  *  T  S  L  A  N  E  R  L  E  T  C  K  *  A  R  L  P  M  L  H  A  F  L  F  K  A  S  A  T  T  *  P  F  P  D  D  T  R  *  *  Y  H  S  P  L  V  V  P  S  T  S  S  V  S  N  S  N  L  S  E  *  R  H  T  V  N  Y  D  D  P  Y  R  L  H  T  *  P  H  I  D  N  V  S  I  A  L  M  Q  T  L  L  Q  P  T  P  N  R  G  S  D  N  Y  V  H  A  P  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8641" stop="8862"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCKNSVNQIIDAGYTYPSLNSQNTFLINFCFFSLSTRYLISNPDQFLISKLLSLNLVKKGRSCLHTGQKSSLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8660" stop="8881"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSTRGTHTLPLILKTPFSSIFASLASPRDTLSRIRISFSSVNCFPLILSRKEDLASTQAKNPPFSSTSSLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10441" PGL_stop="10771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10441" e_stop="10771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="10441" e_stop="10771" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10441" stop="10771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGACAACGTTACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTAGAGAAAGCCAAGTCATACCCAGAAATACATCGAAGTCAACCATTTCTAGGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGCCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAAATCACAATGTAAATCAAAACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGAGCCAGGATCAAATAATACAGAAGTCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  T  T  L  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  K  A  K  S  Y  P  E  I  H  R  S  Q  P  F  L  G  *  P  S  L  H  E  Y  C  S  P  Q  K  P  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  N  H  N  V  N  Q  N  Q  *  Q  M  R  K  I  H  M  K  M  W  S  Q  D  Q  I  I  Q  K  S  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  R  Y  S  F  S  I  T  I  *  D  C  K  I  *  R  K  P  S  H  T  Q  K  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  I  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  A  R  I  K  *  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  D  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  R  E  S  Q  V  I  P  R  N  T  S  K  S  T  I  S  R  I  T  K  S  T  *  V  L  L  P  T  K  A  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  K  S  Q  C  K  S  K  P  V  A  N  E  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  V  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10572" stop="10769"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKATRQDLYTFSTITDSPTGVETRIGMSSKSQCKSKPVANEEDTYENVEPGSNNTEVMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="15625" PGL_stop="23259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18965" e_stop="21648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="18965" e_stop="21648" e_length="2684"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18965" stop="19677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18965" stop="19560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18965" stop="19490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19036" stop="19714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19036" stop="19394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19485" stop="20142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19554" stop="20314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19554" stop="20213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20247" stop="21036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20249" stop="20782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20323" stop="21020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20884" stop="21603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20887" stop="21550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21242" stop="21648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACAATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACAGTGCATCTAGACAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATGAATACAATCACAAAGATATCCTAATATGGCTTAAAAATCTCGTTCATCAAACTCATGAATGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGTCCATACCTGGTTCTAAAAATAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGATAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGGTACTTGTTCTTAATAGTTACTTTGTTCAACTGCCGGTAGTCTATACACATCCGAAAACTCCCATCCTTCTTCTTTACGAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAAGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACTAGACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAATAGAAACACGAATAGGCGTATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCCCTTTCGTTTGTTTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCCCGGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCTTCCAGAATAATGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTATTTGGGACAATTCCTCCTAATATGCCCAGTCTCCCCACATCCATAACACTCTATAGAGTCAAGTATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTATAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCAAATCCTCTTTGATGTCGATGCCATTGTGAAATCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACTTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTATCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGAAAACGTGCCCATGTCCAATGAGGCATCCATACGAGGAGACATAGTGGCTGCATGTTGTACCTCTAAAATCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAAGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCG</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  I  A  S  *  T  N  K  T  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  N  H  P  I  L  R  N  H  M  P  Q  E  G  Q  C  I  *  T  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  I  I  N  E  Y  N  H  K  D  I  L  I  W  L  K  N  L  V  H  Q  T  H  E  C  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  S  I  P  G  S  K  N  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  *  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  V  L  V  L  N  S  Y  F  V  Q  L  P  V  V  Y  T  H  P  K  T  P  I  L  L  L  Y  E  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  R  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  R  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  I  E  T  R  I  G  V  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  R  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  V  S  A  S  D  L  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  L  P  E  *  W  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  Y  L  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  I  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  Y  S  E  D  *  M  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  Q  I  L  F  D  V  D  A  I  V  K  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  I  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  E  N  V  P  M  S  N  E  A  S  I  R  G  D  I  V  A  A  C  C  T  S  K  I  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  S  A  R  P  L  P  L  E  D  V  L  P  R  P   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  F  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  S  A  S  R  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  I  S  S  M  N  T  I  T  K  I  S  *  Y  G  L  K  I  S  F  I  K  L  M  N  A  V  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  I  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  D  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  V  G  A  I  L  *  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  L  D  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  S  P  P  P  I  S  Q  G  K  H  N  N  G  P  F  R  L  F  V  H  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  P  G  R  F  G  D  H  H  Y  L  D  H  H  V  F  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  I  W  D  N  S  S  *  Y  A  Q  S  P  H  I  H  N  T  L  *  S  Q  V  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  I  V  K  T  E  W  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  K  S  S  L  M  S  M  P  L  *  N  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  P  L  L  V  R  L  K  S  A  I  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  H  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  S  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  K  T  C  P  C  P  M  R  H  P  Y  E  E  T  *  W  L  H  V  V  P  L  K  S  E  V  L  V  Q  K  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  F  A  L  V  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  N  S  *  L  N  Q  Q  N  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  Q  S  P  H  P  *  K  P  H  A  P  R  R  T  V  H  L  D  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  Q  S  Q  R  Y  P  N  M  A  *  K  S  R  S  S  N  S  *  M  Q  *  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  V  H  T  W  F  *  K  *  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  I  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  G  T  C  S  *  *  L  L  C  S  T  A  G  S  L  Y  T  S  E  N  S  H  P  S  S  L  R  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  W  E  P  F  Y  K  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  Q  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  *  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  N  R  N  T  N  R  R  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  K  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  L  R  S  P  R  E  S  I  T  M  G  P  F  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  P  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  M  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  F  G  T  I  P  P  N  M  P  S  L  P  T  S  I  T  L  Y  R  V  K  Y  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  N  P  L  *  C  R  C  H  C  E  I  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  F  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  I  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  Y  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  K  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  *  K  R  A  H  V  Q  *  G  I  H  T  R  R  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  S  F  P  F  L  T  L  S  Y  Y  F  F  S  R  W  R  S  H  C  P  S  I  R  W  A  K  C  S  S  S  S  S  R  G  R  P  P  T  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20705" stop="21094"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFQILFDVDAIVKSSGFTPSTSTTKSTTSWKDFAVAATCKAEIRNSDLNPFTKRRIRSCGLKQSWVAYLDSARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19130" stop="19450"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQYIINEYNHKDILIWLKNLVHQTHECSRGIRKTKRHHYKFVMSIPGSKNSLWHIRCPYFQLMITGSQVNLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19670" stop="19936"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20395" stop="20649"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITPAVLVTTITSTTTSSRIMASTMTTSTSSYWGSITLFGTIPPNMPSLPTSITLYRVKYRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21397" stop="21648"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTKISENLIDHLWGRLGWQFLILHLFSFPFLTLSYYFFSRWRSHCPSIRWAKCSSSSSRGRPPTTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22402" e_stop="22714"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="22402" e_stop="22714" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22402" stop="22714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATTGGCCAACTCAAAATAGAGATCAATATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTTCACACATGATGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTACCATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGCACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTACAACT</gDNA_template>
            <first_frame> T  E  *  I  S  L  A  N  S  K  *  R  S  I  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  S  H  M  M  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  T  I  F  Q  D  S  L  S  L  F  L  L  C  R  H  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  Y  N  </first_frame>
            <second_frame>  L  S  R  Y  H  W  P  T  Q  N  R  D  Q  Y  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  S  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  *  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  P  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  T  T </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  A  S  T  I  S  L  T  I  T  V  K  F  T  H  D  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  Y  H  L  S  R  F  I  I  F  I  S  L  V  S  A  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0143K21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15625" e_stop="15935"/>
            <exon e_start="22852" e_stop="23259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.942"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="15625" e_stop="15935" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15936" i_stop="22851" i_length="6916"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="22852" e_stop="23259" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15625" stop="15935"/>
              <exon start="22852" stop="23259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATGTTCATTACATTGAGTATATTACCATCTTTAAAGATTCATTATCTTTATTTCTCTTGTGTCGGCACGTGACACTCCACTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTACTACTATGTGTCGGAACGTGACACTCCTATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTTGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTA : ATCTACGTGTCGGTTCATGACACTCGATCCCCTAAATCTACGTGTCAGTTCGTGACACCCGATCCCCTAAATCTACGTGTCAGTTCGTGACACCCGATCCCCTAATCTTCTTCTATCAACTCATCAAGCCTTCTTTCTTACCAAGACATCATCAATCTCATTATTTTAGTTCATCACGCCTTCTTTTATACCAAGGCCTCATCATTAACAAAGAGATTAGGGTTTTGCAAGATTTGGGATTCAATAACTTCATCATGCTTATATAATCACATTATATAATTACATTCATGCAAGCATACAATTAAGCACATAACAGGGTTTACAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACGAATATCGTAAGAGAAACCATAACCTACCTCCACCGAAGACTA</gDNA_template>
            <first_frame> L  C  S  L  H  *  V  Y  Y  H  L  *  R  F  I  I  F  I  S  L  V  S  A  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  L  L  C  V  G  T  *  H  S  Y  P  L  N  L  R  V  G  S  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  K  S  T  C  R  F  V  T  P  D  P  L  N  L  R  V  G  S  *  H  P  I  P  * :   S  T  C  R  F  M  T  L  D  P  L  N  L  R  V  S  S  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  N  L  L  L  S  T  H  Q  A  F  F  L  T  K  T  S  S  I  S  L  F  *  F  I  T  P  S  F  I  P  R  P  H  H  *  Q  R  D  *  G  F  A  R  F  G  I  Q  *  L  H  H  A  Y  I  I  T  L  Y  N  Y  I  H  A  S  I  Q  L  S  T  *  Q  G  L  Q  Y  Y  Q  Y  I  S  F  A  I  K  S  L  L  R  I  S  *  E  K  P  *  P  T  S  T  E  D   </first_frame>
            <second_frame>  Y  V  H  Y  I  E  Y  I  T  I  F  K  D  S  L  S  L  F  L  L  C  R  H  V  T  L  H  S  L  I  F  I  N  P  L  V  S  V  R  D  T  L  I  P  Y  Y  Y  V  S  E  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  K  S  T  C  R  F  V  T  P  D  P  L  N  L  R  V  G  L  *  H  P  I  P  *  I  Y  V  S  V  R  D  T  R  S  P   : N  L  R  V  G  S  *  H  S  I  P  *  I  Y  V  S  V  R  D  T  R  S  P  K  S  T  C  Q  F  V  T  P  D  P  L  I  F  F  Y  Q  L  I  K  P  S  F  L  P  R  H  H  Q  S  H  Y  F  S  S  S  R  L  L  L  Y  Q  G  L  I  I  N  K  E  I  R  V  L  Q  D  L  G  F  N  N  F  I  M  L  I  *  S  H  Y  I  I  T  F  M  Q  A  Y  N  *  A  H  N  R  V  Y  N  I  I  N  T  Y  H  S  L  L  R  V  Y  Y  E  Y  R  K  R  N  H  N  L  P  P  P  K  T  </second_frame>
            <third_frame>   M  F  I  T  L  S  I  L  P  S  L  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  T  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  *  S  P  T  T  M  C  R  N  V  T  L  L  S  P  K  S  T  C  R  F  V  T  P  D  P  L  N  L  R  V  G  S  *  H  P  I  P  *  I  Y  V  S  V  C  D  T  R  S  P  K  S  T  C  R  F  V  T  P  D  P  L  :  I  Y  V  S  V  H  D  T  R  S  P  K  S  T  C  Q  F  V  T  P  D  P  L  N  L  R  V  S  S  *  H  P  I  P  *  S  S  S  I  N  S  S  S  L  L  S  Y  Q  D  I  I  N  L  I  I  L  V  H  H  A  F  F  Y  T  K  A  S  S  L  T  K  R  L  G  F  C  K  I  W  D  S  I  T  S  S  C  L  Y  N  H  I  I  *  L  H  S  C  K  H  T  I  K  H  I  T  G  F  T  I  L  S  I  H  I  I  R  Y  *  E  F  T  T  N  I  V  R  E  T  I  T  Y  L  H  R  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22887" stop="23117"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYVSVRDTRSPKSTCQFVTPDPLIFFYQLIKPSFLPRHHQSHYFSSSRLLLYQGLIINKEIRVLQDLGFNNFIMLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="32592" PGL_stop="34670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32592" e_stop="34670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="32592" e_stop="34670" e_length="2079"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32592" stop="33172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32819" stop="33282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32825" stop="33554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32825" stop="33554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32825" stop="33506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32825" stop="33476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32828" stop="33296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32838" stop="33270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32839" stop="33436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32839" stop="33210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32842" stop="33540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33446" stop="33960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33592" stop="34141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33747" stop="34301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33757" stop="34421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33757" stop="34346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33915" stop="34650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34157" stop="34670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34165" stop="34602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34179" stop="34634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34182" stop="34642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGAACAGAGCAGGTGTCTCAATCCTGTCGCTCGCTCGTCCTTACTCATAATCGGATGGCCTTGGTTCTGAATCCGTTGAGAATTCGTACGAATTCCAGCTCCCTCGACCTTATCCATTAAGAGTTCTGAATTGTGAGGCATTCCCACATCGTTTTCCCCCTCAATTCCAACCCAGAAGTGGCCCTATATAAACCCTCTTCATTCACTGTTTTAGGAGAGGATTTTCGGAGACCAAAGAGTACCCATAAAATTTTGGGAATTCTTGGTCCCATAGTTCAAAATTTTAAAGCGTTTTGTGGCTTTCGAGTTGAAGAGGTGGAGTCGTCTTGGAAGACTCGTCGCTGCGCAGAACCAGGTAATCTTCTTGCCCTTTGTCAGTGTTGCATTCTAGAGTTGTTATTTGTTTAGATTCAATATGATTAGTGGTGTGAATGACAGTGGAAGTCTTCTTAAAGTTAAGTAAATTTTGAAGGAGTTCAAATGTTTTGCTCTGCTGAAAGTTATTTTCCATGTCAATGTGATTCTTTATTTCATCAAGTTCATAAATCCATACATGTGTTTCCACTTACTATTATCTCTATTCGGTTGGAAATTTGTGCGATATAGTTGGTTTTTTTTTTGCCTTAAGTTGTTGTGTTCTGCATAAAGATTATCACCTCGCCTTTTGCCAAAGCCTGATTTCTCGTATCTGTTTTATAAATACTAGGTTGTGCAACTGCTGTTTTGTTATATTAAGGTGAAAATTAGTTGTTGGGTTGCTTTCTTATTGTCTTCAAAACGTTTTGATTGCTATTGATATGAAAAATGTCTTTATTTCCTACCTTAGCTTCTTTGATCCATAGTTGTGCATACCTTAGCAATATTACATAACCATGTTTTTTCCCCAGACGTTGCTGGTTGCTTTCCTTTCTGTTAGATTTTGAATTAAATGCTTCAGGATATGCATGTCGTTTTAATATTTGATAGTATGATTTCTTTGTTGTTTTATATGGGTTAGTATCATAAACCTCTTTATTTTGTTAAGTAGCATGTTCTATGCCATCTATACTTGCTTTGTATAGTTTCTGTTCTGCGTTAATTCCTGTTGTAGATGCTTAGTTTTGTTATGTGTAATGAATAACAACTCACTGGTTTGAAAGCTTTAAATATGTAAGTTGGGTAATTGGATTCAAAACTTTGGTTCTAGTATTTTATTTCTCGTCTTAATAGTTTCTTAAATACAGGTGATTTGCTCTTTATAGTTTAGTTTTCTTAATTATATCGGAAATGGATAAGAAGCCTCTTGTTTGTTCTTATGTTAGATATTATTCTCTTTTAGGTCTAGTCGATTTGTTTTCTTTTTAAATGCCCCGTGTAATTCAAATTATCTCAAGGTTTCTTTGCTTCTCAAATAGATGTTGGTCTCATTTTGATTTTTAATGTGAGCTCATTTAAAGTTCCTTTCCATTTTGTGTCTTAAACTGTTTATTTGAGATATGTTATCTAGTTTTGAATGTTCACTGGCTTAGATTAATATTATTTATGATTGATTCTAATTCTTATCTTTTCTTCCTTTTCTCTACTCTGCATGAGCACTTCGAGTTCAATGGACTCCACTTCTCTTGCATTATTCCACTTCTTGAGTCAACCTTCTTCGGAGTCGTGAAAGGGAGTCATGTTATTGGGTTAAACACCCAAAAATCAGCAGCAACAACAGCTCCAAATAGCTCAATAAATTGGGTTTAAACACCCAAAAAATGCAACAGCAGCAGTAGCCTTAAAAGGCCAAACCTGAAGCAGCAACTACAGGTCCCCAAAGGGACACAAATTGTTGATTCAAGTCCAATTTATATAGTAATCCCGGCAGCAGCTAAGCAAGAAGCATGAAATGGGGGTTAAAAACCAAAATCGATGAAGTAACAAATCGACATTTCAGCCCCCGAAATTTCAGTTTTATAATTTATTATTTATGTTTGTCTTCTCGTTATTATTTTGGTCATTGTGAATGCTAACCCTTTGTTTTGTTGTTAACTTTTTTTAAAACTTAGATGAATCCTTTGGAGGTTTTCGAATGGCTATTCCATTTCGTTACTTGTTTA</gDNA_template>
            <first_frame> P  N  R  A  G  V  S  I  L  S  L  A  R  P  Y  S  *  S  D  G  L  G  S  E  S  V  E  N  S  Y  E  F  Q  L  P  R  P  Y  P  L  R  V  L  N  C  E  A  F  P  H  R  F  P  P  Q  F  Q  P  R  S  G  P  I  *  T  L  F  I  H  C  F  R  R  G  F  S  E  T  K  E  Y  P  *  N  F  G  N  S  W  S  H  S  S  K  F  *  S  V  L  W  L  S  S  *  R  G  G  V  V  L  E  D  S  S  L  R  R  T  R  *  S  S  C  P  L  S  V  L  H  S  R  V  V  I  C  L  D  S  I  *  L  V  V  *  M  T  V  E  V  F  L  K  L  S  K  F  *  R  S  S  N  V  L  L  C  *  K  L  F  S  M  S  M  *  F  F  I  S  S  S  S  *  I  H  T  C  V  S  T  Y  Y  Y  L  Y  S  V  G  N  L  C  D  I  V  G  F  F  F  A  L  S  C  C  V  L  H  K  D  Y  H  L  A  F  C  Q  S  L  I  S  R  I  C  F  I  N  T  R  L  C  N  C  C  F  V  I  L  R  *  K  L  V  V  G  L  L  S  Y  C  L  Q  N  V  L  I  A  I  D  M  K  N  V  F  I  S  Y  L  S  F  F  D  P  *  L  C  I  P  *  Q  Y  Y  I  T  M  F  F  P  Q  T  L  L  V  A  F  L  S  V  R  F  *  I  K  C  F  R  I  C  M  S  F  *  Y  L  I  V  *  F  L  C  C  F  I  W  V  S  I  I  N  L  F  I  L  L  S  S  M  F  Y  A  I  Y  T  C  F  V  *  F  L  F  C  V  N  S  C  C  R  C  L  V  L  L  C  V  M  N  N  N  S  L  V  *  K  L  *  I  C  K  L  G  N  W  I  Q  N  F  G  S  S  I  L  F  L  V  L  I  V  S  *  I  Q  V  I  C  S  L  *  F  S  F  L  N  Y  I  G  N  G  *  E  A  S  C  L  F  L  C  *  I  L  F  S  F  R  S  S  R  F  V  F  F  L  N  A  P  C  N  S  N  Y  L  K  V  S  L  L  L  K  *  M  L  V  S  F  *  F  L  M  *  A  H  L  K  F  L  S  I  L  C  L  K  L  F  I  *  D  M  L  S  S  F  E  C  S  L  A  *  I  N  I  I  Y  D  *  F  *  F  L  S  F  L  P  F  L  Y  S  A  *  A  L  R  V  Q  W  T  P  L  L  L  H  Y  S  T  S  *  V  N  L  L  R  S  R  E  R  E  S  C  Y  W  V  K  H  P  K  I  S  S  N  N  S  S  K  *  L  N  K  L  G  L  N  T  Q  K  M  Q  Q  Q  Q  *  P  *  K  A  K  P  E  A  A  T  T  G  P  Q  R  D  T  N  C  *  F  K  S  N  L  Y  S  N  P  G  S  S  *  A  R  S  M  K  W  G  L  K  T  K  I  D  E  V  T  N  R  H  F  S  P  R  N  F  S  F  I  I  Y  Y  L  C  L  S  S  R  Y  Y  F  G  H  C  E  C  *  P  F  V  L  L  L  T  F  F  K  T  *  M  N  P  L  E  V  F  E  W  L  F  H  F  V  T  C  L </first_frame>
            <second_frame>  R  T  E  Q  V  S  Q  S  C  R  S  L  V  L  T  H  N  R  M  A  L  V  L  N  P  L  R  I  R  T  N  S  S  S  L  D  L  I  H  *  E  F  *  I  V  R  H  S  H  I  V  F  P  L  N  S  N  P  E  V  A  L  Y  K  P  S  S  F  T  V  L  G  E  D  F  R  R  P  K  S  T  H  K  I  L  G  I  L  G  P  I  V  Q  N  F  K  A  F  C  G  F  R  V  E  E  V  E  S  S  W  K  T  R  R  C  A  E  P  G  N  L  L  A  L  C  Q  C  C  I  L  E  L  L  F  V  *  I  Q  Y  D  *  W  C  E  *  Q  W  K  S  S  *  S  *  V  N  F  E  G  V  Q  M  F  C  S  A  E  S  Y  F  P  C  Q  C  D  S  L  F  H  Q  V  H  K  S  I  H  V  F  P  L  T  I  I  S  I  R  L  E  I  C  A  I  *  L  V  F  F  L  P  *  V  V  V  F  C  I  K  I  I  T  S  P  F  A  K  A  *  F  L  V  S  V  L  *  I  L  G  C  A  T  A  V  L  L  Y  *  G  E  N  *  L  L  G  C  F  L  I  V  F  K  T  F  *  L  L  L  I  *  K  M  S  L  F  P  T  L  A  S  L  I  H  S  C  A  Y  L  S  N  I  T  *  P  C  F  F  P  R  R  C  W  L  L  S  F  L  L  D  F  E  L  N  A  S  G  Y  A  C  R  F  N  I  *  *  Y  D  F  F  V  V  L  Y  G  L  V  S  *  T  S  L  F  C  *  V  A  C  S  M  P  S  I  L  A  L  Y  S  F  C  S  A  L  I  P  V  V  D  A  *  F  C  Y  V  *  *  I  T  T  H  W  F  E  S  F  K  Y  V  S  W  V  I  G  F  K  T  L  V  L  V  F  Y  F  S  S  *  *  F  L  K  Y  R  *  F  A  L  Y  S  L  V  F  L  I  I  S  E  M  D  K  K  P  L  V  C  S  Y  V  R  Y  Y  S  L  L  G  L  V  D  L  F  S  F  *  M  P  R  V  I  Q  I  I  S  R  F  L  C  F  S  N  R  C  W  S  H  F  D  F  *  C  E  L  I  *  S  S  F  P  F  C  V  L  N  C  L  F  E  I  C  Y  L  V  L  N  V  H  W  L  R  L  I  L  F  M  I  D  S  N  S  Y  L  F  F  L  F  S  T  L  H  E  H  F  E  F  N  G  L  H  F  S  C  I  I  P  L  L  E  S  T  F  F  G  V  V  K  G  S  H  V  I  G  L  N  T  Q  K  S  A  A  T  T  A  P  N  S  S  I  N  W  V  *  T  P  K  K  C  N  S  S  S  S  L  K  R  P  N  L  K  Q  Q  L  Q  V  P  K  G  T  Q  I  V  D  S  S  P  I  Y  I  V  I  P  A  A  A  K  Q  E  A  *  N  G  G  *  K  P  K  S  M  K  *  Q  I  D  I  S  A  P  E  I  S  V  L  *  F  I  I  Y  V  C  L  L  V  I  I  L  V  I  V  N  A  N  P  L  F  C  C  *  L  F  L  K  L  R  *  I  L  W  R  F  S  N  G  Y  S  I  S  L  L  V   </second_frame>
            <third_frame>   E  Q  S  R  C  L  N  P  V  A  R  S  S  L  L  I  I  G  W  P  W  F  *  I  R  *  E  F  V  R  I  P  A  P  S  T  L  S  I  K  S  S  E  L  *  G  I  P  T  S  F  S  P  S  I  P  T  Q  K  W  P  Y  I  N  P  L  H  S  L  F  *  E  R  I  F  G  D  Q  R  V  P  I  K  F  W  E  F  L  V  P  *  F  K  I  L  K  R  F  V  A  F  E  L  K  R  W  S  R  L  G  R  L  V  A  A  Q  N  Q  V  I  F  L  P  F  V  S  V  A  F  *  S  C  Y  L  F  R  F  N  M  I  S  G  V  N  D  S  G  S  L  L  K  V  K  *  I  L  K  E  F  K  C  F  A  L  L  K  V  I  F  H  V  N  V  I  L  Y  F  I  K  F  I  N  P  Y  M  C  F  H  L  L  L  S  L  F  G  W  K  F  V  R  Y  S  W  F  F  F  C  L  K  L  L  C  S  A  *  R  L  S  P  R  L  L  P  K  P  D  F  S  Y  L  F  Y  K  Y  *  V  V  Q  L  L  F  C  Y  I  K  V  K  I  S  C  W  V  A  F  L  L  S  S  K  R  F  D  C  Y  *  Y  E  K  C  L  Y  F  L  P  *  L  L  *  S  I  V  V  H  T  L  A  I  L  H  N  H  V  F  S  P  D  V  A  G  C  F  P  F  C  *  I  L  N  *  M  L  Q  D  M  H  V  V  L  I  F  D  S  M  I  S  L  L  F  Y  M  G  *  Y  H  K  P  L  Y  F  V  K  *  H  V  L  C  H  L  Y  L  L  C  I  V  S  V  L  R  *  F  L  L  *  M  L  S  F  V  M  C  N  E  *  Q  L  T  G  L  K  A  L  N  M  *  V  G  *  L  D  S  K  L  W  F  *  Y  F  I  S  R  L  N  S  F  L  N  T  G  D  L  L  F  I  V  *  F  S  *  L  Y  R  K  W  I  R  S  L  L  F  V  L  M  L  D  I  I  L  F  *  V  *  S  I  C  F  L  F  K  C  P  V  *  F  K  L  S  Q  G  F  F  A  S  Q  I  D  V  G  L  I  L  I  F  N  V  S  S  F  K  V  P  F  H  F  V  S  *  T  V  Y  L  R  Y  V  I  *  F  *  M  F  T  G  L  D  *  Y  Y  L  *  L  I  L  I  L  I  F  S  S  F  S  L  L  C  M  S  T  S  S  S  M  D  S  T  S  L  A  L  F  H  F  L  S  Q  P  S  S  E  S  *  K  G  V  M  L  L  G  *  T  P  K  N  Q  Q  Q  Q  Q  L  Q  I  A  Q  *  I  G  F  K  H  P  K  N  A  T  A  A  V  A  L  K  G  Q  T  *  S  S  N  Y  R  S  P  K  G  H  K  L  L  I  Q  V  Q  F  I  *  *  S  R  Q  Q  L  S  K  K  H  E  M  G  V  K  N  Q  N  R  *  S  N  K  S  T  F  Q  P  P  K  F  Q  F  Y  N  L  L  F  M  F  V  F  S  L  L  F  W  S  L  *  M  L  T  L  C  F  V  V  N  F  F  *  N  L  D  E  S  F  G  G  F  R  M  A  I  P  F  R  Y  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34027" stop="34317"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFPFCVLNCLFEICYLVLNVHWLRLILFMIDSNSYLFFLFSTLHEHFEFNGLHFSCIIPLLESTFFGVVKGSHVIGLNTQKSAATTAPNSSINWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32722" stop="33000"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVRHSHIVFPLNSNPEVALYKPSSFTVLGEDFRRPKSTHKILGILGPIVQNFKAFCGFRVEEVESSWKTRRCAEPGNLLALCQCCILELLFV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33138" stop="33332"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHTCVSTYYYLYSVGNLCDIVGFFFALSCCVLHKDYHLAFCQSLISRICFINTRLCNCCFVILR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="41813" PGL_stop="45847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41813" e_stop="41916"/>
            <exon e_start="45715" e_stop="45847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.000" e_score="0.942"/>
          <exon-only e_score="0.880"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="41813" e_stop="41916" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41917" i_stop="45714" i_length="3798"/>
          </intron>
          <exon e_serial="2" e_score="0.880">
            <gDNA_exon_boundary e_start="45715" e_stop="45847" e_length="133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41813" stop="41916"/>
              <exon start="45715" stop="45847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAATAACAAGAAGGAAAAACATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAGAACAGTATATATCAA : ATAATATCATAAAATCAACTACAATACTCAACATGCGGCATTTACAATTACCATAACCCTTGGTCACAACACCAAGCTCATCAAAGAGGACTCACGCCTCCCCATCATACTCATTTGGGAATTAGGTTCATTA</gDNA_template>
            <first_frame> H  K  *  Q  E  G  K  T  *  K  *  G  S  V  Q  N  T  G  T  E  *  I  S  S  A  N  S  K  *  R  T  V  Y  I  K :   *  Y  H  K  I  N  Y  N  T  Q  H  A  A  F  T  I  T  I  T  L  G  H  N  T  K  L  I  K  E  D  S  R  L  P  I  I  L  I  W  E  L  G  S  L </first_frame>
            <second_frame>  T  N  N  K  K  E  K  H  K  S  R  G  Q  Y  K  T  R  V  L  S  R  Y  H  R  P  T  Q  N  R  E  Q  Y  I  S   : N  N  I  I  K  S  T  T  I  L  N  M  R  H  L  Q  L  P  *  P  L  V  T  T  P  S  S  S  K  R  T  H  A  S  P  S  Y  S  F  G  N  *  V  H   </second_frame>
            <third_frame>   Q  I  T  R  R  K  N  I  K  V  G  V  S  T  K  H  G  Y  *  V  D  I  I  G  Q  L  K  I  E  N  S  I  Y  Q  :  I  I  S  *  N  Q  L  Q  Y  S  T  C  G  I  Y  N  Y  H  N  P  W  S  Q  H  Q  A  H  Q  R  G  L  T  P  P  H  H  T  H  L  G  I  R  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0143K21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="78382" PGL_stop="77663"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78382" e_stop="77663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="78382" e_stop="77663" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78382" stop="77663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78379" stop="77716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGGAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAACGTCCGGGGGATATACTTCTCCATAAACAAGTTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAATATGCGACCGCCACCACATTTTGGTGTTCCCTTGAAACTGATAAGTCACAAATTCCACACAAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAAAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGCACTTCTGAAACTGGAGATGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATTAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGACAATCGCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</gDNA_template>
            <first_frame> T  N  P  L  L  W  T  E  T  K  L  G  G  I  S  G  *  C  T  E  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  R  P  G  D  I  L  L  H  K  Q  V  R  E  *  G  P  S  H  R  W  C  L  R  W  L  T  L  N  M  R  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  F  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  C  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  H  F  *  N  W  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  E  I  G  E  N  L  I  D  H  L  W  G  R  L  G  *  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  N  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  V  F  P  *  N  *  *  V  T  N  S  T  Q  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  K  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  D  V  G  A  E  N  T  G  G  A  *  P  *  L  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  D  N  R  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </second_frame>
            <third_frame>   E  S  A  L  V  D  *  N  K  V  G  W  H  I  W  I  V  H  G  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  T  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  P  L  V  D  T  Q  Y  A  T  A  T  T  F  W  C  S  L  E  T  D  K  S  Q  I  P  H  K  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  K  N  H  K  H  P  P  I  Q  H  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  M  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  A  L  L  K  L  E  M  L  A  Q  K  T  L  E  V  P  D  L  D  *  T  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  V  G  V  T  I  A  H  S  A  L  V  H  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78381" stop="78172"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRSCGLKQSWVAYLDSARNLASYALTDILPCSRLKNSSLFLSLNVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="78286" PGL_stop="79730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78286" e_stop="78458"/>
            <exon e_start="79203" e_stop="79730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.954"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="78286" e_stop="78458" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78459" i_stop="79202" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="79203" e_stop="79730" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78286" stop="78458"/>
              <exon start="79203" stop="79730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTCCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCATTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTATGGGTATGACTTGGCTTTTTTCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCGGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTCTGTATTGACCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTGTTGAACAAAAGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  P  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  Y  G  Y  D  L  A  F  F  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  F  L  Y  *  P  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  T  T  S  R  V  V  E  Q  K  L  H  *  T  K  C  I  P  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  H  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  M  G  M  T  W  L  F  S  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  R  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  S  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  S  V  H  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  I  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  L  W  V  *  L  G  F  F  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  G  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  I  S  V  L  T  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  H  N  F  K  S  C  *  T  K  A  S  L  D  Q  V  H  P  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78287" stop="78458"/>
                    <exon start="79203" stop="79729"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRHFVKGLRSELRISALQVAATAKSFQEMDDFDVIMGMTWLFSQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFRDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKSFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="80302" PGL_stop="78545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80302" e_stop="78545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="80302" e_stop="78545" e_length="1758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80302" stop="79590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80302" stop="79707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79782" stop="79124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79713" stop="78952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79713" stop="79053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79103" stop="78545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGCCTCAATCTTAGAAGGATCTACCATCACCTCATCCTTCGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCCTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTCCTTACTTTTAAAGTATATCAGTATATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCTGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCATAATGGCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCCCAGGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGGTACTTGTTCTTTATGGTTACCTTGTTCAACTGCTGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCTTTTGTTCAACAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCCGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGAAAAAAGCCAAGTCATACCCATAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAGGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATGAAGTAATTCACAATGTAAATTTAGACCATTACCAAATGAGGAAGATACATAAGAAATTGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCTACTTCAGATCTCCAAGGGAAAGCGTAGCAATGGGCCCTCTCACCCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTACAGGTTGCCCATCACCTCGGCCGTTCTGGTGGCCACCATTACCTCGGCCACCATATTTTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGATAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTAGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGCGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  Y  H  H  L  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  P  F  L  P  Q  H  F  Q  Y  H  S  Q  M  F  F  M  F  L  L  T  F  K  V  Y  Q  Y  I  I  N  K  Y  D  H  K  *  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  I  M  A  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  V  L  V  L  Y  G  Y  L  V  Q  L  L  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  V  Q  Q  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  V  N  T  E  I  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  P  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  K  K  P  S  H  T  H  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  G  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  M  K  *  F  T  M  *  I  *  T  I  T  K  *  G  R  Y  I  R  N  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  Y  F  R  S  P  R  E  S  V  A  M  G  P  L  T  R  L  S  V  A  P  T  M  L  *  C  S  G  Y  R  L  P  I  T  S  A  V  L  V  A  T  I  T  S  A  T  I  F  S  R  I  T  A  S  T  M  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  I  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  R  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  C  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  A  S  I  L  E  G  S  T  I  T  S  S  F  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  L  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  K  Y  I  S  I  S  S  I  N  T  I  T  N  R  S  R  Y  G  L  K  I  L  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  W  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  P  R  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  W  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  L  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  E  K  S  Q  V  I  P  I  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  *  S  N  S  Q  C  K  F  R  P  L  P  N  E  E  D  T  *  E  I  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  T  S  D  L  Q  G  K  A  *  Q  W  A  L  S  P  V  C  P  L  P  L  P  C  C  D  V  V  A  T  G  C  P  S  P  R  P  F  W  W  P  P  L  P  R  P  P  Y  F  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  *  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  T  A  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  P  Q  S  *  K  D  L  P  S  P  H  P  S  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  V  L  H  V  P  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  R  S  Q  I  D  P  D  M  A  *  K  S  C  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  H  N  G  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  P  G  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  G  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  F  C  S  T  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  G  Q  Y  R  N  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  K  K  A  K  S  Y  P  *  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  R  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  E  V  I  H  N  V  N  L  D  H  Y  Q  M  R  K  I  H  K  K  L  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  L  L  Q  I  S  K  G  K  R  S  N  G  P  S  H  P  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  V  A  H  H  L  G  R  S  G  G  H  H  Y  L  G  H  H  I  F  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  *  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  R  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78871" stop="78617"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGYRLPITSAVLVATITSATIFSRITASTMTTSTSNIWRSVTLFWIISLNMSNLPTSIALSRFMHRSLREVLTGRRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79575" stop="79330"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79999" stop="79799"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQIWLKNPVHQAHESSRGIRKTKRHHYKFIMAIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79597" stop="79397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGASTRFKVNTEINIPIWWHTRKICREHIPKLTDHRNRLNRRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80106" stop="79909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFSLNISNTILKCSSCSSLLLKYISISSINTITNRSRYGLKILFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="95995" PGL_stop="110357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95995" e_stop="96440"/>
            <exon e_start="98362" e_stop="98513"/>
            <exon e_start="98697" e_stop="98796"/>
            <exon e_start="98875" e_stop="98943"/>
            <exon e_start="99021" e_stop="99257"/>
            <exon e_start="99362" e_stop="99539"/>
            <exon e_start="100412" e_stop="100544"/>
            <exon e_start="102351" e_stop="102510"/>
            <exon e_start="102584" e_stop="102731"/>
            <exon e_start="102805" e_stop="102905"/>
            <exon e_start="102992" e_stop="103150"/>
            <exon e_start="103805" e_stop="103873"/>
            <exon e_start="103948" e_stop="104016"/>
            <exon e_start="104108" e_stop="104245"/>
            <exon e_start="105008" e_stop="105136"/>
            <exon e_start="106341" e_stop="106488"/>
            <exon e_start="106586" e_stop="106596"/>
            <exon e_start="106688" e_stop="106828"/>
            <exon e_start="106912" e_stop="107037"/>
            <exon e_start="107637" e_stop="107699"/>
            <exon e_start="108263" e_stop="108557"/>
            <exon e_start="108847" e_stop="109049"/>
            <exon e_start="109528" e_stop="110357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.721" acc_prob="0.963" e_score="0.964"/>
          <exon-intron don_prob="0.990" acc_prob="0.167" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.034" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.946" acc_prob="0.873" e_score="0.979"/>
          <exon-intron don_prob="0.152" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.764" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.746" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.401" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.723" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.125" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="95995" e_stop="96440" e_length="446"/>
          </exon>
          <intron i_serial="1" don_prob="0.721" acc_prob="0.963">
            <gDNA_intron_boundary i_start="96441" i_stop="98361" i_length="1921"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98362" e_stop="98513" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.167">
            <gDNA_intron_boundary i_start="98514" i_stop="98696" i_length="183"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98697" e_stop="98796" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.034">
            <gDNA_intron_boundary i_start="98797" i_stop="98874" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="98875" e_stop="98943" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="98944" i_stop="99020" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="0.979">
            <gDNA_exon_boundary e_start="99021" e_stop="99257" e_length="237"/>
          </exon>
          <intron i_serial="5" don_prob="0.946" acc_prob="0.873">
            <gDNA_intron_boundary i_start="99258" i_stop="99361" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="99362" e_stop="99539" e_length="178"/>
          </exon>
          <intron i_serial="6" don_prob="0.152" acc_prob="0.959">
            <gDNA_intron_boundary i_start="99540" i_stop="100411" i_length="872"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="100412" e_stop="100544" e_length="133"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="100545" i_stop="102350" i_length="1806"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="102351" e_stop="102510" e_length="160"/>
          </exon>
          <intron i_serial="8" don_prob="0.984" acc_prob="0.987">
            <gDNA_intron_boundary i_start="102511" i_stop="102583" i_length="73"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="102584" e_stop="102731" e_length="148"/>
          </exon>
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          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGGCCGGTGCCTCCCTTCTTCATCTGTCAAAGACTCAATTTTTTTCAACATTTCAATATCTTCTTCTTCATAGTTTCTCTCTCTACACCTCTGTCTCCATAAAAATATATAAATTTGTCTGAATTTTCTTCTTTTTTTTGTTCTTGATTTTCGTATATATATACTGTCTCTCTGTATATCTGCAAAAAAAAAAAGAATATCAAAAAAATAATTAGTACGGTACAATCATTTTCCAGGCAAAGGGAGAAAAGGGGAGGTCCAAAATATACAATCTTGGAACCCCATTACTTCAATTATTCACTTCCTTTTTGGTGTACCACTTTTTCATATTTCGCCAGCTTTGCATAACCCCTTTTTCTTCTGTGTTTTGAATACCCTTTTGGTTTATCTTCTCTGTGGAGGGAGAGTTTTTGCTGCATAGATCTCTCTGTAGAGGAGGAATAG : TTGGTTTTGTCAGAATATTGAGATAGCTGTGGTTAGAAACTTCAGCATTCCAGTTTCCTTTGTTGAAAGAAGTGGTAACAAGGAGGACTTTGCACAATGTCTGGCTCTGTGAAAACTTTGGATCCTGCATTTCAGGGTGCAGGTCAAAGAGT : AGGGACTGAAATTTGGAGAATTGAGGATTTCCAACCAGTTCCTTTGCCAAAATCTGATTATGGTAAATTTTACTCCGGAGATTCATACATCATCTTGCAG : ACAACTTCAGGAAAGGGTGGTGCTTATTTGTATGATATACATTTCTGGCTTGGAAAGAATACTAGTCAG : GATGAAGCTGGAACTGCAGCTATCAAAACAGTGGAGCTTGATGTGGTCCTTGGAGGGCGAGCAGTACAGTATCGAGAAGTCCAAGGTCACGAAACTGACAAATTTTTGTCATACTTCAAACCATGTATTATACCTCTGGAGGGTGGTGTTGCATCTGGGTTCAAGAAACCAGAGGAGGAAGAATTTGAAACAAAGCTGTATATTTGCAAGGGTAAACGAGTAGTAAGGATGAAGCAG : GTTCCATTCTCCCGGTCCTCTCTAAATCATGATGATGTGTTCATTCTGGACACTAAAGACAAGATATATCAATTCAATGGTGCAAACTCCAATATCCAAGAAAGGGCCAAAGCATTGGAAGTTATTCAGTTTTTGAAGGAAAAATATCATGAGGGGACGTGTGATGTTGCAATTGTTG : ATGATGGAAATTTGCAAGCTGAGTCTGATTCTGGATCATTCTGGGTTTTGTTTGGTGGATTTGCTCCAATTAGCAAAAAGGTTATTACTGAAGATGATATTGTTCCCGAGAAGACACCTCCTAAACTTAGCAG : CATCACTGATGGTCAAGTCAGTCCTGTAGATGGTGAACTTTCAAAGTCTAGCTTGGAAAACAATAAATGCTATCTTTTGGATTGCGGTGCTGAGGTGTTTGTTTGGATTGGTCGTGTAACTCAACTGGAGGAGAGGAAAGCTGCCATTCAAACTGCAGAG : GAATATCTTGTCTCTGAAAATAGACCCAAGGCAACGCGTGTAACCCGGGTTATTCAAGGTTATGAAACCCATTCATTCAAGTCCAACTTTGACTCTTGGCCATCAGGATCTGCACCTGCCCCTGAAGAGGGAAGAGGAAAAGTAGCAG : CTTTGCTGAAGCAGCAAGGTGCTGGCGTCAAAGGTGCCAGCAAAAGTGCTCCTGTAATTGAGGAAGTGCCTCCGTTGCTTGAAGAGGGTGGAAAATTAGAG : GTATGGCGCATAAATGGTAATGCAAAGACACCTGTCCCAAAAGAAGATATTGGTAAATTCTACAGTGGAGATTGCTATGTGGTTCTCTACAACTACCATTCTCATGAAAGGAGAGACGATTACTATCTATGTTGGTGGATTGGAAAGGATAGTATTGAG : GAGGACCAAATCACGGCTGCTCGATTGGCCAGTACAATGTGCAATTCACTCAAAGGAAGACCTGTGCTG : GGTCGAGTGTTTCAAGGGAAAGAACCTCCACAGTTTGTTGCAATCTTCCAGCCCATGTTGGTCCTTAAG : GGTGGTTTGAGCACTGGCTACAAAAACTATATTGCTGACAAAGGCTTGAATGATGAAACCTATACTGCTGATTCAGTTGCACTTATTCGGTTATCTGGAACTTCTGTGCATAATAACAAAGCGGTTCAAGTGGATGCT : GTGCCAAGTTCACTGAACTCTAATGAGTGTTTTCTTCTGCAATCTGGCTCTTCATTATTCAGTTGGCATGGTAACCAGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAG : CCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAG : GAAAATTTGAG : GTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAG : AAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGT : GCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAG : AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG : AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG : GCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTGGTTTTTTTCGATTGGAAATCAGCAGTCAGGTGGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCATGTATTTTGTTAATTAAAAGGGTGTATACATTATGTTGTAACCTATACAAAAAGGAATATAACATTTGGGGTTTGCCATCAAGAGACCTTTGTGGCTCTGCTCTTGTTTTCGTTTTTTAAACGGTTGTATCCCAGGCCAGCTTGCATGCAGCTCGACTATTCCACCGAGGGCGATGCTTTGGTTCCTGAATTACTTATAAGTTCACATATTGGCCATAGATATTTATATCATATGTATTTGAGGTTTGTTTGGTTGCTAAATCAAAAGGACATTGTATCAAGAGTTAATCTCTTGGTGGTTTGCAATTCCATTATTGGAGAGTTTTGTTGAACAACTTTGTTAATGTTTAATGATTTACATTTATAATTAAGTGGTGTTGCTTGTAACAATTTTTTAAAATTTTTAATTCTTTTGGGATCAA</gDNA_template>
            <first_frame> N  G  R  C  L  P  S  S  S  V  K  D  S  I  F  F  N  I  S  I  S  S  S  S  *  F  L  S  L  H  L  C  L  H  K  N  I  *  I  C  L  N  F  L  L  F  F  V  L  D  F  R  I  Y  I  L  S  L  C  I  S  A  K  K  K  R  I  S  K  K  *  L  V  R  Y  N  H  F  P  G  K  G  R  K  G  E  V  Q  N  I  Q  S  W  N  P  I  T  S  I  I  H  F  L  F  G  V  P  L  F  H  I  S  P  A  L  H  N  P  F  F  F  C  V  L  N  T  L  L  V  Y  L  L  C  G  G  R  V  F  A  A  *  I  S  L  *  R  R  N  S :   W  F  C  Q  N  I  E  I  A  V  V  R  N  F  S  I  P  V  S  F  V  E  R  S  G  N  K  E  D  F  A  Q  C  L  A  L  *  K  L  W  I  L  H  F  R  V  Q  V  K  E   : *  G  L  K  F  G  E  L  R  I  S  N  Q  F  L  C  Q  N  L  I  M  V  N  F  T  P  E  I  H  T  S  S  C  R :   Q  L  Q  E  R  V  V  L  I  C  M  I  Y  I  S  G  L  E  R  I  L  V  R :   M  K  L  E  L  Q  L  S  K  Q  W  S  L  M  W  S  L  E  G  E  Q  Y  S  I  E  K  S  K  V  T  K  L  T  N  F  C  H  T  S  N  H  V  L  Y  L  W  R  V  V  L  H  L  G  S  R  N  Q  R  R  K  N  L  K  Q  S  C  I  F  A  R  V  N  E  *  *  G  *  S  R :   F  H  S  P  G  P  L  *  I  M  M  M  C  S  F  W  T  L  K  T  R  Y  I  N  S  M  V  Q  T  P  I  S  K  K  G  P  K  H  W  K  L  F  S  F  *  R  K  N  I  M  R  G  R  V  M  L  Q  L  L  :  M  M  E  I  C  K  L  S  L  I  L  D  H  S  G  F  C  L  V  D  L  L  Q  L  A  K  R  L  L  L  K  M  I  L  F  P  R  R  H  L  L  N  L  A   : A  S  L  M  V  K  S  V  L  *  M  V  N  F  Q  S  L  A  W  K  T  I  N  A  I  F  W  I  A  V  L  R  C  L  F  G  L  V  V  *  L  N  W  R  R  G  K  L  P  F  K  L  Q  R :   N  I  L  S  L  K  I  D  P  R  Q  R  V  *  P  G  L  F  K  V  M  K  P  I  H  S  S  P  T  L  T  L  G  H  Q  D  L  H  L  P  L  K  R  E  E  E  K  *  Q  :  L  C  *  S  S  K  V  L  A  S  K  V  P  A  K  V  L  L  *  L  R  K  C  L  R  C  L  K  R  V  E  N  *  R :   Y  G  A  *  M  V  M  Q  R  H  L  S  Q  K  K  I  L  V  N  S  T  V  E  I  A  M  W  F  S  T  T  T  I  L  M  K  G  E  T  I  T  I  Y  V  G  G  L  E  R  I  V  L  R :   R  T  K  S  R  L  L  D  W  P  V  Q  C  A  I  H  S  K  E  D  L  C  W :   V  E  C  F  K  G  K  N  L  H  S  L  L  Q  S  S  S  P  C  W  S  L  R :   V  V  *  A  L  A  T  K  T  I  L  L  T  K  A  *  M  M  K  P  I  L  L  I  Q  L  H  L  F  G  Y  L  E  L  L  C  I  I  T  K  R  F  K  W  M  L :   C  Q  V  H  *  T  L  M  S  V  F  F  C  N  L  A  L  H  Y  S  V  G  M  V  T  R  V  L  M  S  S  S  N  *  Q  Q  R  L  Q  N  S  *  S :   Q  E  Q  Q  *  N  T  L  K  K  E  Q  R  A  L  L  S  G  L  P  L  E  E  N  K  V  I  P  A  R  K  W  L  Q  K  S  P  G  I  P  T  C  L  L  I  H  L  I  K  :  E  N  L  R :   L  K  K  S  T  T  L  L  K  M  I  Y  *  P  R  M  S  Y  Y  S  T  H  M  L  K  C  L  F  G  L  V  S  Q  Q  T  P  K  K  S  R  A  L  L  K  L  D  R :   N  T  W  R  W  L  H  L  W  K  D  Y  H  Q  M  F  H  S  I  K  S  Q  K  E  M  N  L  A  F  L  Q  H  F  S  H  G  I  L  Q  K  P  V :   L  M  E  T  H  S  R  R  R  L  C  Y  S  L  G  L  V  M  L  Q  R :   I  S  K  G  Q  M  G  Q  V  G  Q  P  K  G  L  Q  R  *  L  L  *  T  R  L  S  V  P  H  L  P  Q  N  L  V  L  H  R  G  L  L  E  Q  V  R  L  L  H  K  E  Q  L  Q  *  L  H  Y  L  T  F  L  Q  L  R  K  S  S  R  V  R  V  V  L  L  S  N  Q  T  E  A  H  L  Y  D  Q  A  E  A  L  L  F  D  Q  *  T  L  A  L  L  :  K  V  I  F  L  L  L  R  S  K  I  P  K  K  F  Q  N  L  R  R  L  L  S  L  L  K  L  M  G  Q  N  Q  S  R  M  R  V  E  M  K  V  V  K  L  Y  L  V  M  N  S  *  R  L  N  L  T  T  L  S  P  G  L  I  L  S  E  E  R :   P  I  Y  R  M  K  N  L  C  L  Y  L  V  *  R  K  K  H  S  T  S  C  L  N  G  N  K  I  C  T  K  G  K  L  I  S  S  R  S  C  I  G  E  T  K  W  P  V  A  I  L  L  L  Q  F  S  T  S  V  P  M  F  L  A  R  A  T  Y  F  Y  R  Y  I  L  P  G  S  C  M  *  H  F  F  S  F  A  S  L  N  D  H  S  S  W  *  F  Y  F  Y  D  F  V  M  P  A  *  S  L  V  F  F  D  W  K  S  A  V  R  W  L  I  L  *  F  D  Q  C  I  R  V  C  V  H  *  S  H  V  F  C  *  L  K  G  C  I  H  Y  V  V  T  Y  T  K  R  N  I  T  F  G  V  C  H  Q  E  T  F  V  A  L  L  L  F  S  F  F  K  R  L  Y  P  R  P  A  C  M  Q  L  D  Y  S  T  E  G  D  A  L  V  P  E  L  L  I  S  S  H  I  G  H  R  Y  L  Y  H  M  Y  L  R  F  V  W  L  L  N  Q  K  D  I  V  S  R  V  N  L  L  V  V  C  N  S  I  I  G  E  F  C  *  T  T  L  L  M  F  N  D  L  H  L  *  L  S  G  V  A  C  N  N  F  L  K  F  L  I  L  L  G  S  </first_frame>
            <second_frame>  M  A  G  A  S  L  L  H  L  S  K  T  Q  F  F  S  T  F  Q  Y  L  L  L  H  S  F  S  L  Y  T  S  V  S  I  K  I  Y  K  F  V  *  I  F  F  F  F  L  F  L  I  F  V  Y  I  Y  C  L  S  V  Y  L  Q  K  K  K  E  Y  Q  K  N  N  *  Y  G  T  I  I  F  Q  A  K  G  E  K  G  R  S  K  I  Y  N  L  G  T  P  L  L  Q  L  F  T  S  F  L  V  Y  H  F  F  I  F  R  Q  L  C  I  T  P  F  S  S  V  F  *  I  P  F  W  F  I  F  S  V  E  G  E  F  L  L  H  R  S  L  C  R  G  G  I   : V  G  F  V  R  I  L  R  *  L  W  L  E  T  S  A  F  Q  F  P  L  L  K  E  V  V  T  R  R  T  L  H  N  V  W  L  C  E  N  F  G  S  C  I  S  G  C  R  S  K  S  :  R  D  *  N  L  E  N  *  G  F  P  T  S  S  F  A  K  I  *  L  W  *  I  L  L  R  R  F  I  H  H  L  A   : D  N  F  R  K  G  W  C  L  F  V  *  Y  T  F  L  A  W  K  E  Y  *  S   : G  *  S  W  N  C  S  Y  Q  N  S  G  A  *  C  G  P  W  R  A  S  S  T  V  S  R  S  P  R  S  R  N  *  Q  I  F  V  I  L  Q  T  M  Y  Y  T  S  G  G  W  C  C  I  W  V  Q  E  T  R  G  G  R  I  *  N  K  A  V  Y  L  Q  G  *  T  S  S  K  D  E  A   : G  S  I  L  P  V  L  S  K  S  *  *  C  V  H  S  G  H  *  R  Q  D  I  S  I  Q  W  C  K  L  Q  Y  P  R  K  G  Q  S  I  G  S  Y  S  V  F  E  G  K  I  S  *  G  D  V  *  C  C  N  C  * :   *  W  K  F  A  S  *  V  *  F  W  I  I  L  G  F  V  W  W  I  C  S  N  *  Q  K  G  Y  Y  *  R  *  Y  C  S  R  E  D  T  S  *  T  *  Q  :  H  H  *  W  S  S  Q  S  C  R  W  *  T  F  K  V  *  L  G  K  Q  *  M  L  S  F  G  L  R  C  *  G  V  C  L  D  W  S  C  N  S  T  G  G  E  E  S  C  H  S  N  C  R   : G  I  S  C  L  *  K  *  T  Q  G  N  A  C  N  P  G  Y  S  R  L  *  N  P  F  I  Q  V  Q  L  *  L  L  A  I  R  I  C  T  C  P  *  R  G  K  R  K  S  S  S :   F  A  E  A  A  R  C  W  R  Q  R  C  Q  Q  K  C  S  C  N  *  G  S  A  S  V  A  *  R  G  W  K  I  R   : G  M  A  H  K  W  *  C  K  D  T  C  P  K  R  R  Y  W  *  I  L  Q  W  R  L  L  C  G  S  L  Q  L  P  F  S  *  K  E  R  R  L  L  S  M  L  V  D  W  K  G  *  Y  *   : G  G  P  N  H  G  C  S  I  G  Q  Y  N  V  Q  F  T  Q  R  K  T  C  A   : G  S  S  V  S  R  E  R  T  S  T  V  C  C  N  L  P  A  H  V  G  P  *   : G  W  F  E  H  W  L  Q  K  L  Y  C  *  Q  R  L  E  *  *  N  L  Y  C  *  F  S  C  T  Y  S  V  I  W  N  F  C  A  *  *  Q  S  G  S  S  G  C   : C  A  K  F  T  E  L  *  *  V  F  S  S  A  I  W  L  F  I  I  Q  L  A  W  *  P  E  F  L  *  A  A  A  I  S  S  K  G  C  R  I  L  E   : A  R  S  N  S  E  T  H  *  R  R  N  R  E  L  C  F  L  V  C  P  W  R  K  T  K  L  Y  Q  Q  E  S  G  S  R  S  L  Q  G  S  P  L  V  C  L  F  I  *  *  R :   K  I  *   : G  *  R  N  L  Q  L  C  S  R  *  F  I  D  R  G  C  L  T  T  R  H  T  C  *  S  V  C  L  G  W  S  V  S  R  L  Q  R  K  A  E  R  F  *  N  W  T   : E  I  R  G  D  G  C  I  F  G  R  I  I  T  K  C  S  T  L  *  N  H  R  R  K  *  T  L  L  F  Y  N  I  F  L  M  G  S  C  K  S  Q   : C  S  W  K  L  I  P  E  E  G  Y  A  T  L  W  G  W  S  C  F  R   : E  S  A  K  V  K  W  G  R  W  A  N  P  K  G  F  S  V  S  C  F  K  L  G  F  Q  F  P  I  S  P  K  I  W  F  C  T  E  A  C  W  S  K  S  G  F  F  T  K  S  S  C  N  S  C  I  I  *  R  S  Y  S  *  E  K  A  V  E  *  E  W  F  S  C  P  I  K  Q  K  L  T  C  T  I  K  Q  K  L  S  C  S  I  S  R  L  W  P  C  * :   K  *  S  F  Y  C  *  G  P  R  F  R  K  S  F  R  T  *  G  D  C  *  A  C  *  N  *  W  V  R  T  R  A  G  *  G  W  K  *  K  W  S  S  Y  I  *  L  *  T  A  E  G  *  I  *  Q  P  C  H  R  D  *  F  *  A  K  R   : G  L  S  I  G  *  R  I  Y  V  C  T  W  Y  E  E  R  S  I  L  Q  V  A  *  M  E  T  R  Y  A  Q  K  E  N  *  S  L  L  D  P  A  S  E  K  P  N  G  L  L  L  S  C  C  C  N  S  R  H  P  F  P  C  F  L  P  E  Q  P  T  F  I  G  T  Y  C  L  D  R  V  C  S  I  F  F  H  L  L  L  S  M  T  I  A  P  G  S  F  I  F  T  I  L  *  C  L  L  E  V  W  F  F  S  I  G  N  Q  Q  S  G  G  *  F  F  D  L  I  S  V  S  E  F  V  F  I  E  V  M  Y  F  V  N  *  K  G  V  Y  I  M  L  *  P  I  Q  K  G  I  *  H  L  G  F  A  I  K  R  P  L  W  L  C  S  C  F  R  F  L  N  G  C  I  P  G  Q  L  A  C  S  S  T  I  P  P  R  A  M  L  W  F  L  N  Y  L  *  V  H  I  L  A  I  D  I  Y  I  I  C  I  *  G  L  F  G  C  *  I  K  R  T  L  Y  Q  E  L  I  S  W  W  F  A  I  P  L  L  E  S  F  V  E  Q  L  C  *  C  L  M  I  Y  I  Y  N  *  V  V  L  L  V  T  I  F  *  N  F  *  F  F  W  D  Q </second_frame>
            <third_frame>   W  P  V  P  P  F  F  I  C  Q  R  L  N  F  F  Q  H  F  N  I  F  F  F  I  V  S  L  S  T  P  L  S  P  *  K  Y  I  N  L  S  E  F  S  S  F  F  C  S  *  F  S  Y  I  Y  T  V  S  L  Y  I  C  K  K  K  K  N  I  K  K  I  I  S  T  V  Q  S  F  S  R  Q  R  E  K  R  G  G  P  K  Y  T  I  L  E  P  H  Y  F  N  Y  S  L  P  F  W  C  T  T  F  S  Y  F  A  S  F  A  *  P  L  F  L  L  C  F  E  Y  P  F  G  L  S  S  L  W  R  E  S  F  C  C  I  D  L  S  V  E  E  E  *  :  L  V  L  S  E  Y  *  D  S  C  G  *  K  L  Q  H  S  S  F  L  C  *  K  K  W  *  Q  G  G  L  C  T  M  S  G  S  V  K  T  L  D  P  A  F  Q  G  A  G  Q  R  V :   G  T  E  I  W  R  I  E  D  F  Q  P  V  P  L  P  K  S  D  Y  G  K  F  Y  S  G  D  S  Y  I  I  L  Q  :  T  T  S  G  K  G  G  A  Y  L  Y  D  I  H  F  W  L  G  K  N  T  S  Q  :  D  E  A  G  T  A  A  I  K  T  V  E  L  D  V  V  L  G  G  R  A  V  Q  Y  R  E  V  Q  G  H  E  T  D  K  F  L  S  Y  F  K  P  C  I  I  P  L  E  G  G  V  A  S  G  F  K  K  P  E  E  E  E  F  E  T  K  L  Y  I  C  K  G  K  R  V  V  R  M  K  Q  :  V  P  F  S  R  S  S  L  N  H  D  D  V  F  I  L  D  T  K  D  K  I  Y  Q  F  N  G  A  N  S  N  I  Q  E  R  A  K  A  L  E  V  I  Q  F  L  K  E  K  Y  H  E  G  T  C  D  V  A  I  V   : D  D  G  N  L  Q  A  E  S  D  S  G  S  F  W  V  L  F  G  G  F  A  P  I  S  K  K  V  I  T  E  D  D  I  V  P  E  K  T  P  P  K  L  S  S :   I  T  D  G  Q  V  S  P  V  D  G  E  L  S  K  S  S  L  E  N  N  K  C  Y  L  L  D  C  G  A  E  V  F  V  W  I  G  R  V  T  Q  L  E  E  R  K  A  A  I  Q  T  A  E  :  E  Y  L  V  S  E  N  R  P  K  A  T  R  V  T  R  V  I  Q  G  Y  E  T  H  S  F  K  S  N  F  D  S  W  P  S  G  S  A  P  A  P  E  E  G  R  G  K  V  A   : A  L  L  K  Q  Q  G  A  G  V  K  G  A  S  K  S  A  P  V  I  E  E  V  P  P  L  L  E  E  G  G  K  L  E  :  V  W  R  I  N  G  N  A  K  T  P  V  P  K  E  D  I  G  K  F  Y  S  G  D  C  Y  V  V  L  Y  N  Y  H  S  H  E  R  R  D  D  Y  Y  L  C  W  W  I  G  K  D  S  I  E  :  E  D  Q  I  T  A  A  R  L  A  S  T  M  C  N  S  L  K  G  R  P  V  L  :  G  R  V  F  Q  G  K  E  P  P  Q  F  V  A  I  F  Q  P  M  L  V  L  K  :  G  G  L  S  T  G  Y  K  N  Y  I  A  D  K  G  L  N  D  E  T  Y  T  A  D  S  V  A  L  I  R  L  S  G  T  S  V  H  N  N  K  A  V  Q  V  D  A  :  V  P  S  S  L  N  S  N  E  C  F  L  L  Q  S  G  S  S  L  F  S  W  H  G  N  Q  S  S  Y  E  Q  Q  Q  L  A  A  K  V  A  E  F  L  K  :  P  G  A  T  V  K  H  T  K  E  G  T  E  S  S  A  F  W  F  A  L  G  G  K  Q  S  Y  T  S  K  K  V  A  P  E  V  S  R  D  P  H  L  F  A  Y  S  F  N  K   : G  K  F  E  :  V  E  E  I  Y  N  F  A  Q  D  D  L  L  T  E  D  V  L  L  L  D  T  H  A  E  V  F  V  W  V  G  Q  S  A  D  S  K  E  K  Q  S  A  F  E  I  G  Q  :  K  Y  V  E  M  A  A  S  L  E  G  L  S  P  N  V  P  L  Y  K  I  T  E  G  N  E  P  C  F  F  T  T  F  F  S  W  D  P  A  K  A  S  :  A  H  G  N  S  F  Q  K  K  V  M  L  L  F  G  V  G  H  A  S  E  :  N  Q  Q  R  S  N  G  A  G  G  P  T  Q  R  A  S  A  L  A  A  L  N  S  A  F  S  S  P  S  P  P  K  S  G  S  A  P  R  P  A  G  A  S  Q  A  S  S  Q  R  A  A  A  I  A  A  L  S  N  V  L  T  A  E  K  K  Q  S  S  E  S  G  S  P  V  Q  S  N  R  S  S  P  V  R  S  S  R  S  S  P  V  R  S  V  D  S  G  P  A   : E  S  D  L  S  T  A  E  V  Q  D  S  E  K  V  S  E  P  K  E  I  V  E  P  A  E  T  N  G  S  E  P  E  Q  D  E  G  G  N  E  S  G  Q  A  I  F  S  Y  E  Q  L  K  A  K  S  D  N  P  V  T  G  I  D  F  K  R  R  E  :  A  Y  L  S  D  E  E  F  M  S  V  L  G  M  K  K  E  A  F  Y  K  L  P  K  W  K  Q  D  M  H  K  R  K  T  D  L  F  *  I  L  H  R  R  N  Q  M  A  C  C  Y  L  V  V  A  I  L  D  I  R  S  H  V  S  C  Q  S  N  L  L  L  *  V  H  I  A  W  I  V  Y  V  A  F  F  F  I  C  F  S  Q  *  P  *  L  L  V  V  L  F  L  R  F  C  D  A  C  L  K  F  G  F  F  R  L  E  I  S  S  Q  V  V  D  S  L  I  *  S  V  Y  P  S  L  C  S  L  K  S  C  I  L  L  I  K  R  V  Y  T  L  C  C  N  L  Y  K  K  E  Y  N  I  W  G  L  P  S  R  D  L  C  G  S  A  L  V  F  V  F  *  T  V  V  S  Q  A  S  L  H  A  A  R  L  F  H  R  G  R  C  F  G  S  *  I  T  Y  K  F  T  Y  W  P  *  I  F  I  S  Y  V  F  E  V  C  L  V  A  K  S  K  G  H  C  I  K  S  *  S  L  G  G  L  Q  F  H  Y  W  R  V  L  L  N  N  F  V  N  V  *  *  F  T  F  I  I  K  W  C  C  L  *  Q  F  F  K  I  F  N  S  F  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98440" stop="98513"/>
                    <exon start="98697" stop="98796"/>
                    <exon start="98875" stop="98943"/>
                    <exon start="99021" stop="99257"/>
                    <exon start="99362" stop="99539"/>
                    <exon start="100412" stop="100544"/>
                    <exon start="102351" stop="102510"/>
                    <exon start="102584" stop="102731"/>
                    <exon start="102805" stop="102905"/>
                    <exon start="102992" stop="103150"/>
                    <exon start="103805" stop="103873"/>
                    <exon start="103948" stop="104016"/>
                    <exon start="104108" stop="104245"/>
                    <exon start="105008" stop="105136"/>
                    <exon start="106341" stop="106488"/>
                    <exon start="106586" stop="106596"/>
                    <exon start="106688" stop="106828"/>
                    <exon start="106912" stop="107037"/>
                    <exon start="107637" stop="107699"/>
                    <exon start="108263" stop="108557"/>
                    <exon start="108847" stop="109049"/>
                    <exon start="109528" stop="109641"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2862</number_coding_nucleotides>
                  <number_encoded_amino_acids>954</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGGLCTMSGSVKTLDPAFQGAGQRVGTEIWRIEDFQPVPLPKSDYGKFYSGDSYIILQTTSGKGGAYLYDIHFWLGKNTSQDEAGTAAIKTVELDVVLGGRAVQYREVQGHETDKFLSYFKPCIIPLEGGVASGFKKPEEEEFETKLYICKGKRVVRMKQVPFSRSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHEGTCDVAIVDDGNLQAESDSGSFWVLFGGFAPISKKVITEDDIVPEKTPPKLSSITDGQVSPVDGELSKSSLENNKCYLLDCGAEVFVWIGRVTQLEERKAAIQTAEEYLVSENRPKATRVTRVIQGYETHSFKSNFDSWPSGSAPAPEEGRGKVAALLKQQGAGVKGASKSAPVIEEVPPLLEEGGKLEVWRINGNAKTPVPKEDIGKFYSGDCYVVLYNYHSHERRDDYYLCWWIGKDSIEEDQITAARLASTMCNSLKGRPVLGRVFQGKEPPQFVAIFQPMLVLKGGLSTGYKNYIADKGLNDETYTADSVALIRLSGTSVHNNKAVQVDAVPSSLNSNECFLLQSGSSLFSWHGNQSSYEQQQLAAKVAEFLKPGATVKHTKEGTESSAFWFALGGKQSYTSKKVAPEVSRDPHLFAYSFNKGKFEVEEIYNFAQDDLLTEDVLLLDTHAEVFVWVGQSADSKEKQSAFEIGQKYVEMAASLEGLSPNVPLYKITEGNEPCFFTTFFSWDPAKASAHGNSFQKKVMLLFGVGHASENQQRSNGAGGPTQRASALAALNSAFSSPSPPKSGSAPRPAGASQASSQRAAAIAALSNVLTAEKKQSSESGSPVQSNRSSPVRSSRSSPVRSVDSGPAESDLSTAEVQDSEKVSEPKEIVEPAETNGSEPEQDEGGNESGQAIFSYEQLKAKSDNPVTGIDFKRREAYLSDEEFMSVLGMKKEAFYKLPKWKQDMHKRKTDLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109949" stop="110266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKGCIHYVVTYTKRNITFGVCHQETFVALLLFSFFKRLYPRPACMQLDYSTEGDALVPELLISSHIGHRYLYHMYLRFVWLLNQKDIVSRVNLLVVCNSIIGEFC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96208" stop="96417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVRYNHFPGKGRKGEVQNIQSWNPITSIIHFLFGVPLFHISPALHNPFFFCVLNTLLVYLLCGGRVFAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109632" stop="109835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLDPASEKPNGLLLSCCCNSRHPFPCFLPEQPTFIGTYCLDRVCSIFFHLLLSMTIAPGSFIFTIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103797" e_stop="103873"/>
            <exon e_start="103948" e_stop="104016"/>
            <exon e_start="104108" e_stop="104245"/>
            <exon e_start="105008" e_stop="105136"/>
            <exon e_start="106341" e_stop="106488"/>
            <exon e_start="106586" e_stop="106596"/>
            <exon e_start="106688" e_stop="106828"/>
            <exon e_start="106912" e_stop="107037"/>
            <exon e_start="107637" e_stop="107699"/>
            <exon e_start="108263" e_stop="108557"/>
            <exon e_start="108847" e_stop="109049"/>
            <exon e_start="109528" e_stop="110357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.746" acc_prob="0.769" e_score="0.883"/>
          <exon-intron don_prob="0.980" acc_prob="0.993" e_score="0.928"/>
          <exon-intron don_prob="0.987" acc_prob="0.941" e_score="0.964"/>
          <exon-intron don_prob="0.910" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.401" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.723" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.125" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.883">
            <gDNA_exon_boundary e_start="103797" e_stop="103873" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.746" acc_prob="0.769">
            <gDNA_intron_boundary i_start="103874" i_stop="103947" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.928">
            <gDNA_exon_boundary e_start="103948" e_stop="104016" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.993">
            <gDNA_intron_boundary i_start="104017" i_stop="104107" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="104108" e_stop="104245" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.941">
            <gDNA_intron_boundary i_start="104246" i_stop="105007" i_length="762"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105008" e_stop="105136" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.910" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105137" i_stop="106340" i_length="1204"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106341" e_stop="106488" e_length="148"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.401">
            <gDNA_intron_boundary i_start="106489" i_stop="106585" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106586" e_stop="106596" e_length="11"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="106597" i_stop="106687" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="106688" e_stop="106828" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="106829" i_stop="106911" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="106912" e_stop="107037" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.923" acc_prob="0.989">
            <gDNA_intron_boundary i_start="107038" i_stop="107636" i_length="599"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="107637" e_stop="107699" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.723">
            <gDNA_intron_boundary i_start="107700" i_stop="108262" i_length="563"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="108263" e_stop="108557" e_length="295"/>
          </exon>
          <intron i_serial="10" don_prob="0.982" acc_prob="0.125">
            <gDNA_intron_boundary i_start="108558" i_stop="108846" i_length="289"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="108847" e_stop="109049" e_length="203"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.907">
            <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478"/>
          </intron>
          <exon e_serial="12" e_score="0.994">
            <gDNA_exon_boundary e_start="109528" e_stop="110357" e_length="830"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103797" stop="103873"/>
              <exon start="103948" stop="104016"/>
              <exon start="104108" stop="104245"/>
              <exon start="105008" stop="105038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104152" stop="104245"/>
              <exon start="105008" stop="105136"/>
              <exon start="106341" stop="106488"/>
              <exon start="106586" stop="106596"/>
              <exon start="106688" stop="106828"/>
              <exon start="106912" stop="106957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105024" stop="105136"/>
              <exon start="106341" stop="106488"/>
              <exon start="106586" stop="106596"/>
              <exon start="106688" stop="106828"/>
              <exon start="106912" stop="107037"/>
              <exon start="107637" stop="107655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105084" stop="105136"/>
              <exon start="106341" stop="106488"/>
              <exon start="106586" stop="106596"/>
              <exon start="106688" stop="106828"/>
              <exon start="106912" stop="107011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105104" stop="105136"/>
              <exon start="106341" stop="106488"/>
              <exon start="106586" stop="106596"/>
              <exon start="106688" stop="106828"/>
              <exon start="106912" stop="107037"/>
              <exon start="107637" stop="107699"/>
              <exon start="108263" stop="108443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106341" stop="106488"/>
              <exon start="106586" stop="106596"/>
              <exon start="106688" stop="106828"/>
              <exon start="106912" stop="107026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106368" stop="106488"/>
              <exon start="106586" stop="106596"/>
              <exon start="106688" stop="106828"/>
              <exon start="106912" stop="107037"/>
              <exon start="107637" stop="107691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106402" stop="106488"/>
              <exon start="106586" stop="106596"/>
              <exon start="106688" stop="106828"/>
              <exon start="106912" stop="107037"/>
              <exon start="107637" stop="107699"/>
              <exon start="108263" stop="108371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106464" stop="106488"/>
              <exon start="106586" stop="106596"/>
              <exon start="106688" stop="106828"/>
              <exon start="106912" stop="107037"/>
              <exon start="107637" stop="107699"/>
              <exon start="108263" stop="108557"/>
              <exon start="108847" stop="108867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106758" stop="106828"/>
              <exon start="106912" stop="107037"/>
              <exon start="107637" stop="107699"/>
              <exon start="108263" stop="108557"/>
              <exon start="108847" stop="109049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106806" stop="106828"/>
              <exon start="106912" stop="107037"/>
              <exon start="107637" stop="107699"/>
              <exon start="108263" stop="108557"/>
              <exon start="108847" stop="109049"/>
              <exon start="109528" stop="109600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106812" stop="106828"/>
              <exon start="106912" stop="107037"/>
              <exon start="107637" stop="107699"/>
              <exon start="108263" stop="108557"/>
              <exon start="108847" stop="108863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106912" stop="107037"/>
              <exon start="107637" stop="107699"/>
              <exon start="108263" stop="108557"/>
              <exon start="108847" stop="108934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107638" stop="107699"/>
              <exon start="108263" stop="108557"/>
              <exon start="108847" stop="108963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107642" stop="107699"/>
              <exon start="108263" stop="108557"/>
              <exon start="108847" stop="109049"/>
              <exon start="109528" stop="109557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108263" stop="108557"/>
              <exon start="108847" stop="109049"/>
              <exon start="109528" stop="109651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108277" stop="108557"/>
              <exon start="108847" stop="109049"/>
              <exon start="109528" stop="109738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108289" stop="108557"/>
              <exon start="108847" stop="108933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108292" stop="108557"/>
              <exon start="108847" stop="109049"/>
              <exon start="109528" stop="109620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108294" stop="108557"/>
              <exon start="108847" stop="108976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108387" stop="108557"/>
              <exon start="108847" stop="109049"/>
              <exon start="109528" stop="109699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108387" stop="108557"/>
              <exon start="108847" stop="108966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108425" stop="108557"/>
              <exon start="108847" stop="109049"/>
              <exon start="109528" stop="109936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599643" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108453" stop="108557"/>
              <exon start="108847" stop="109049"/>
              <exon start="109528" stop="109859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108453" stop="108557"/>
              <exon start="108847" stop="109049"/>
              <exon start="109528" stop="109766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108453" stop="108557"/>
              <exon start="108847" stop="109049"/>
              <exon start="109528" stop="109665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108453" stop="108557"/>
              <exon start="108847" stop="109049"/>
              <exon start="109528" stop="109655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108935" stop="109049"/>
              <exon start="109528" stop="110012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418172" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108938" stop="109049"/>
              <exon start="109528" stop="109976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109564" stop="110045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109700" stop="110357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATACAGGAGGACCAAATCACGGCTGCTCGATTGGCCAGTACAATGTGCAATTCACTCAAAGGAAGACCTGTGCTG : GGTCGAGTGTTTCAAGGGAAAGAACCTCCACAGTTTGTTGCAATCTTCCAGCCCATGTTGGTCCTTAAG : GGTGGTTTGAGCACTGGCTACAAAAACTATATTGCTGACAAAGGCTTGAATGATGAAACCTATACTGCTGATTCAGTTGCACTTATTCGGTTATCTGGAACTTCTGTGCATAATAACAAAGCGGTTCAAGTGGATGCT : GTGCCAAGTTCACTGAACTCTAATGAGTGTTTTCTTCTGCAATCTGGCTCTTCATTATTCAGTTGGCATGGTAACCAGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAG : CCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAG : GAAAATTTGAG : GTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAG : AAATACGTGGAGATGGCTGCATCTTTGGAAGGATTATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCTGCAAAAGCCAGT : GCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAG : AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG : AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG : GCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTGGTTTTTTTCGATTGGAAATCAGCAGTCAGGTGGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCATGTATTTTGTTAATTAAAAGGGTGTATACATTATGTTGTAACCTATACAAAAAGGAATATAACATTTGGGGTTTGCCATCAAGAGACCTTTGTGGCTCTGCTCTTGTTTTCGTTTTTTAAACGGTTGTATCCCAGGCCAGCTTGCATGCAGCTCGACTATTCCACCGAGGGCGATGCTTTGGTTCCTGAATTACTTATAAGTTCACATATTGGCCATAGATATTTATATCATATGTATTTGAGGTTTGTTTGGTTGCTAAATCAAAAGGACATTGTATCAAGAGTTAATCTCTTGGTGGTTTGCAATTCCATTATTGGAGAGTTTTGTTGAACAACTTTGTTAATGTTTAATGATTTACATTTATAATTAAGTGGTGTTGCTTGTAACAATTTTTTAAAATTTTTAATTCTTTTGGGATCAA</gDNA_template>
            <first_frame> *  Y  R  R  T  K  S  R  L  L  D  W  P  V  Q  C  A  I  H  S  K  E  D  L  C  W :   V  E  C  F  K  G  K  N  L  H  S  L  L  Q  S  S  S  P  C  W  S  L  R :   V  V  *  A  L  A  T  K  T  I  L  L  T  K  A  *  M  M  K  P  I  L  L  I  Q  L  H  L  F  G  Y  L  E  L  L  C  I  I  T  K  R  F  K  W  M  L :   C  Q  V  H  *  T  L  M  S  V  F  F  C  N  L  A  L  H  Y  S  V  G  M  V  T  R  V  L  M  S  S  S  N  *  Q  Q  R  L  Q  N  S  *  S :   Q  E  Q  Q  *  N  T  L  K  K  E  Q  R  A  L  L  S  G  L  P  L  E  E  N  K  V  I  P  A  R  K  W  L  Q  K  S  P  G  I  P  T  C  L  L  I  H  L  I  K  :  E  N  L  R :   L  K  K  S  T  T  L  L  K  M  I  Y  *  P  R  M  S  Y  Y  S  T  H  M  L  K  C  L  F  G  L  V  S  Q  Q  T  P  K  K  S  R  A  L  L  K  L  D  R :   N  T  W  R  W  L  H  L  W  K  D  Y  H  Q  M  F  H  S  I  K  S  Q  K  E  M  N  L  A  F  L  Q  H  F  S  H  G  I  L  Q  K  P  V :   L  M  E  T  H  S  R  R  R  L  C  Y  S  L  G  L  V  M  L  Q  R :   I  S  K  G  Q  M  G  Q  V  G  Q  P  K  G  L  Q  R  *  L  L  *  T  R  L  S  V  P  H  L  P  Q  N  L  V  L  H  R  G  L  L  E  Q  V  R  L  L  H  K  E  Q  L  Q  *  L  H  Y  L  T  F  L  Q  L  R  K  S  S  R  V  R  V  V  L  L  S  N  Q  T  E  A  H  L  Y  D  Q  A  E  A  L  L  F  D  Q  *  T  L  A  L  L  :  K  V  I  F  L  L  L  R  S  K  I  P  K  K  F  Q  N  L  R  R  L  L  S  L  L  K  L  M  G  Q  N  Q  S  R  M  R  V  E  M  K  V  V  K  L  Y  L  V  M  N  S  *  R  L  N  L  T  T  L  S  P  G  L  I  L  S  E  E  R :   P  I  Y  R  M  K  N  L  C  L  Y  L  V  *  R  K  K  H  S  T  S  C  L  N  G  N  K  I  C  T  K  G  K  L  I  S  S  R  S  C  I  G  E  T  K  W  P  V  A  I  L  L  L  Q  F  S  T  S  V  P  M  F  L  A  R  A  T  Y  F  Y  R  Y  I  L  P  G  S  C  M  *  H  F  F  S  F  A  S  L  N  D  H  S  S  W  *  F  Y  F  Y  D  F  V  M  P  A  *  S  L  V  F  F  D  W  K  S  A  V  R  W  L  I  L  *  F  D  Q  C  I  R  V  C  V  H  *  S  H  V  F  C  *  L  K  G  C  I  H  Y  V  V  T  Y  T  K  R  N  I  T  F  G  V  C  H  Q  E  T  F  V  A  L  L  L  F  S  F  F  K  R  L  Y  P  R  P  A  C  M  Q  L  D  Y  S  T  E  G  D  A  L  V  P  E  L  L  I  S  S  H  I  G  H  R  Y  L  Y  H  M  Y  L  R  F  V  W  L  L  N  Q  K  D  I  V  S  R  V  N  L  L  V  V  C  N  S  I  I  G  E  F  C  *  T  T  L  L  M  F  N  D  L  H  L  *  L  S  G  V  A  C  N  N  F  L  K  F  L  I  L  L  G  S  </first_frame>
            <second_frame>  D  T  G  G  P  N  H  G  C  S  I  G  Q  Y  N  V  Q  F  T  Q  R  K  T  C  A   : G  S  S  V  S  R  E  R  T  S  T  V  C  C  N  L  P  A  H  V  G  P  *   : G  W  F  E  H  W  L  Q  K  L  Y  C  *  Q  R  L  E  *  *  N  L  Y  C  *  F  S  C  T  Y  S  V  I  W  N  F  C  A  *  *  Q  S  G  S  S  G  C   : C  A  K  F  T  E  L  *  *  V  F  S  S  A  I  W  L  F  I  I  Q  L  A  W  *  P  E  F  L  *  A  A  A  I  S  S  K  G  C  R  I  L  E   : A  R  S  N  S  E  T  H  *  R  R  N  R  E  L  C  F  L  V  C  P  W  R  K  T  K  L  Y  Q  Q  E  S  G  S  R  S  L  Q  G  S  P  L  V  C  L  F  I  *  *  R :   K  I  *   : G  *  R  N  L  Q  L  C  S  R  *  F  I  D  R  G  C  L  T  T  R  H  T  C  *  S  V  C  L  G  W  S  V  S  R  L  Q  R  K  A  E  R  F  *  N  W  T   : E  I  R  G  D  G  C  I  F  G  R  I  I  T  K  C  S  T  L  *  N  H  R  R  K  *  T  L  L  F  Y  N  I  F  L  M  G  S  C  K  S  Q   : C  S  W  K  L  I  P  E  E  G  Y  A  T  L  W  G  W  S  C  F  R   : E  S  A  K  V  K  W  G  R  W  A  N  P  K  G  F  S  V  S  C  F  K  L  G  F  Q  F  P  I  S  P  K  I  W  F  C  T  E  A  C  W  S  K  S  G  F  F  T  K  S  S  C  N  S  C  I  I  *  R  S  Y  S  *  E  K  A  V  E  *  E  W  F  S  C  P  I  K  Q  K  L  T  C  T  I  K  Q  K  L  S  C  S  I  S  R  L  W  P  C  * :   K  *  S  F  Y  C  *  G  P  R  F  R  K  S  F  R  T  *  G  D  C  *  A  C  *  N  *  W  V  R  T  R  A  G  *  G  W  K  *  K  W  S  S  Y  I  *  L  *  T  A  E  G  *  I  *  Q  P  C  H  R  D  *  F  *  A  K  R   : G  L  S  I  G  *  R  I  Y  V  C  T  W  Y  E  E  R  S  I  L  Q  V  A  *  M  E  T  R  Y  A  Q  K  E  N  *  S  L  L  D  P  A  S  E  K  P  N  G  L  L  L  S  C  C  C  N  S  R  H  P  F  P  C  F  L  P  E  Q  P  T  F  I  G  T  Y  C  L  D  R  V  C  S  I  F  F  H  L  L  L  S  M  T  I  A  P  G  S  F  I  F  T  I  L  *  C  L  L  E  V  W  F  F  S  I  G  N  Q  Q  S  G  G  *  F  F  D  L  I  S  V  S  E  F  V  F  I  E  V  M  Y  F  V  N  *  K  G  V  Y  I  M  L  *  P  I  Q  K  G  I  *  H  L  G  F  A  I  K  R  P  L  W  L  C  S  C  F  R  F  L  N  G  C  I  P  G  Q  L  A  C  S  S  T  I  P  P  R  A  M  L  W  F  L  N  Y  L  *  V  H  I  L  A  I  D  I  Y  I  I  C  I  *  G  L  F  G  C  *  I  K  R  T  L  Y  Q  E  L  I  S  W  W  F  A  I  P  L  L  E  S  F  V  E  Q  L  C  *  C  L  M  I  Y  I  Y  N  *  V  V  L  L  V  T  I  F  *  N  F  *  F  F  W  D  Q </second_frame>
            <third_frame>   I  Q  E  D  Q  I  T  A  A  R  L  A  S  T  M  C  N  S  L  K  G  R  P  V  L  :  G  R  V  F  Q  G  K  E  P  P  Q  F  V  A  I  F  Q  P  M  L  V  L  K  :  G  G  L  S  T  G  Y  K  N  Y  I  A  D  K  G  L  N  D  E  T  Y  T  A  D  S  V  A  L  I  R  L  S  G  T  S  V  H  N  N  K  A  V  Q  V  D  A  :  V  P  S  S  L  N  S  N  E  C  F  L  L  Q  S  G  S  S  L  F  S  W  H  G  N  Q  S  S  Y  E  Q  Q  Q  L  A  A  K  V  A  E  F  L  K  :  P  G  A  T  V  K  H  T  K  E  G  T  E  S  S  A  F  W  F  A  L  G  G  K  Q  S  Y  T  S  K  K  V  A  P  E  V  S  R  D  P  H  L  F  A  Y  S  F  N  K   : G  K  F  E  :  V  E  E  I  Y  N  F  A  Q  D  D  L  L  T  E  D  V  L  L  L  D  T  H  A  E  V  F  V  W  V  G  Q  S  A  D  S  K  E  K  Q  S  A  F  E  I  G  Q  :  K  Y  V  E  M  A  A  S  L  E  G  L  S  P  N  V  P  L  Y  K  I  T  E  G  N  E  P  C  F  F  T  T  F  F  S  W  D  P  A  K  A  S  :  A  H  G  N  S  F  Q  K  K  V  M  L  L  F  G  V  G  H  A  S  E  :  N  Q  Q  R  S  N  G  A  G  G  P  T  Q  R  A  S  A  L  A  A  L  N  S  A  F  S  S  P  S  P  P  K  S  G  S  A  P  R  P  A  G  A  S  Q  A  S  S  Q  R  A  A  A  I  A  A  L  S  N  V  L  T  A  E  K  K  Q  S  S  E  S  G  S  P  V  Q  S  N  R  S  S  P  V  R  S  S  R  S  S  P  V  R  S  V  D  S  G  P  A   : E  S  D  L  S  T  A  E  V  Q  D  S  E  K  V  S  E  P  K  E  I  V  E  P  A  E  T  N  G  S  E  P  E  Q  D  E  G  G  N  E  S  G  Q  A  I  F  S  Y  E  Q  L  K  A  K  S  D  N  P  V  T  G  I  D  F  K  R  R  E  :  A  Y  L  S  D  E  E  F  M  S  V  L  G  M  K  K  E  A  F  Y  K  L  P  K  W  K  Q  D  M  H  K  R  K  T  D  L  F  *  I  L  H  R  R  N  Q  M  A  C  C  Y  L  V  V  A  I  L  D  I  R  S  H  V  S  C  Q  S  N  L  L  L  *  V  H  I  A  W  I  V  Y  V  A  F  F  F  I  C  F  S  Q  *  P  *  L  L  V  V  L  F  L  R  F  C  D  A  C  L  K  F  G  F  F  R  L  E  I  S  S  Q  V  V  D  S  L  I  *  S  V  Y  P  S  L  C  S  L  K  S  C  I  L  L  I  K  R  V  Y  T  L  C  C  N  L  Y  K  K  E  Y  N  I  W  G  L  P  S  R  D  L  C  G  S  A  L  V  F  V  F  *  T  V  V  S  Q  A  S  L  H  A  A  R  L  F  H  R  G  R  C  F  G  S  *  I  T  Y  K  F  T  Y  W  P  *  I  F  I  S  Y  V  F  E  V  C  L  V  A  K  S  K  G  H  C  I  K  S  *  S  L  G  G  L  Q  F  H  Y  W  R  V  L  L  N  N  F  V  N  V  *  *  F  T  F  I  I  K  W  C  C  L  *  Q  F  F  K  I  F  N  S  F  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103799" stop="103873"/>
                    <exon start="103948" stop="104016"/>
                    <exon start="104108" stop="104245"/>
                    <exon start="105008" stop="105136"/>
                    <exon start="106341" stop="106488"/>
                    <exon start="106586" stop="106596"/>
                    <exon start="106688" stop="106828"/>
                    <exon start="106912" stop="107037"/>
                    <exon start="107637" stop="107699"/>
                    <exon start="108263" stop="108557"/>
                    <exon start="108847" stop="109049"/>
                    <exon start="109528" stop="109641"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1509</number_coding_nucleotides>
                  <number_encoded_amino_acids>503</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQEDQITAARLASTMCNSLKGRPVLGRVFQGKEPPQFVAIFQPMLVLKGGLSTGYKNYIADKGLNDETYTADSVALIRLSGTSVHNNKAVQVDAVPSSLNSNECFLLQSGSSLFSWHGNQSSYEQQQLAAKVAEFLKPGATVKHTKEGTESSAFWFALGGKQSYTSKKVAPEVSRDPHLFAYSFNKGKFEVEEIYNFAQDDLLTEDVLLLDTHAEVFVWVGQSADSKEKQSAFEIGQKYVEMAASLEGLSPNVPLYKITEGNEPCFFTTFFSWDPAKASAHGNSFQKKVMLLFGVGHASENQQRSNGAGGPTQRASALAALNSAFSSPSPPKSGSAPRPAGASQASSQRAAAIAALSNVLTAEKKQSSESGSPVQSNRSSPVRSSRSSPVRSVDSGPAESDLSTAEVQDSEKVSEPKEIVEPAETNGSEPEQDEGGNESGQAIFSYEQLKAKSDNPVTGIDFKRREAYLSDEEFMSVLGMKKEAFYKLPKWKQDMHKRKTDLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109949" stop="110266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKGCIHYVVTYTKRNITFGVCHQETFVALLLFSFFKRLYPRPACMQLDYSTEGDALVPELLISSHIGHRYLYHMYLRFVWLLNQKDIVSRVNLLVVCNSIIGEFC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109632" stop="109835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLDPASEKPNGLLLSCCCNSRHPFPCFLPEQPTFIGTYCLDRVCSIFFHLLLSMTIAPGSFIFTIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="95995" e_stop="96440"/>
            <exon e_start="98362" e_stop="98513"/>
            <exon e_start="98697" e_stop="98796"/>
            <exon e_start="98875" e_stop="98943"/>
            <exon e_start="99021" e_stop="99257"/>
            <exon e_start="99362" e_stop="99539"/>
            <exon e_start="100412" e_stop="100544"/>
            <exon e_start="102351" e_stop="102510"/>
            <exon e_start="102584" e_stop="102731"/>
            <exon e_start="102805" e_stop="102905"/>
            <exon e_start="102992" e_stop="103150"/>
            <exon e_start="103805" e_stop="103873"/>
            <exon e_start="103948" e_stop="104016"/>
            <exon e_start="104108" e_stop="104245"/>
            <exon e_start="105008" e_stop="105136"/>
            <exon e_start="106341" e_stop="106488"/>
            <exon e_start="106586" e_stop="106596"/>
            <exon e_start="106688" e_stop="106828"/>
            <exon e_start="106912" e_stop="106929"/>
            <exon e_start="107026" e_stop="107037"/>
            <exon e_start="107637" e_stop="107699"/>
            <exon e_start="108263" e_stop="108557"/>
            <exon e_start="108847" e_stop="109049"/>
            <exon e_start="109528" e_stop="110357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.721" acc_prob="0.963" e_score="0.964"/>
          <exon-intron don_prob="0.990" acc_prob="0.167" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.034" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.946" acc_prob="0.873" e_score="0.979"/>
          <exon-intron don_prob="0.152" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.764" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.746" acc_prob="0.769" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.999" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.401" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.723" e_score="1.000"/>
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          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGGCCGGTGCCTCCCTTCTTCATCTGTCAAAGACTCAATTTTTTTCAACATTTCAATATCTTCTTCTTCATAGTTTCTCTCTCTACACCTCTGTCTCCATAAAAATATATAAATTTGTCTGAATTTTCTTCTTTTTTTTGTTCTTGATTTTCGTATATATATACTGTCTCTCTGTATATCTGCAAAAAAAAAAAGAATATCAAAAAAATAATTAGTACGGTACAATCATTTTCCAGGCAAAGGGAGAAAAGGGGAGGTCCAAAATATACAATCTTGGAACCCCATTACTTCAATTATTCACTTCCTTTTTGGTGTACCACTTTTTCATATTTCGCCAGCTTTGCATAACCCCTTTTTCTTCTGTGTTTTGAATACCCTTTTGGTTTATCTTCTCTGTGGAGGGAGAGTTTTTGCTGCATAGATCTCTCTGTAGAGGAGGAATAG : TTGGTTTTGTCAGAATATTGAGATAGCTGTGGTTAGAAACTTCAGCATTCCAGTTTCCTTTGTTGAAAGAAGTGGTAACAAGGAGGACTTTGCACAATGTCTGGCTCTGTGAAAACTTTGGATCCTGCATTTCAGGGTGCAGGTCAAAGAGT : AGGGACTGAAATTTGGAGAATTGAGGATTTCCAACCAGTTCCTTTGCCAAAATCTGATTATGGTAAATTTTACTCCGGAGATTCATACATCATCTTGCAG : ACAACTTCAGGAAAGGGTGGTGCTTATTTGTATGATATACATTTCTGGCTTGGAAAGAATACTAGTCAG : GATGAAGCTGGAACTGCAGCTATCAAAACAGTGGAGCTTGATGTGGTCCTTGGAGGGCGAGCAGTACAGTATCGAGAAGTCCAAGGTCACGAAACTGACAAATTTTTGTCATACTTCAAACCATGTATTATACCTCTGGAGGGTGGTGTTGCATCTGGGTTCAAGAAACCAGAGGAGGAAGAATTTGAAACAAAGCTGTATATTTGCAAGGGTAAACGAGTAGTAAGGATGAAGCAG : GTTCCATTCTCCCGGTCCTCTCTAAATCATGATGATGTGTTCATTCTGGACACTAAAGACAAGATATATCAATTCAATGGTGCAAACTCCAATATCCAAGAAAGGGCCAAAGCATTGGAAGTTATTCAGTTTTTGAAGGAAAAATATCATGAGGGGACGTGTGATGTTGCAATTGTTG : ATGATGGAAATTTGCAAGCTGAGTCTGATTCTGGATCATTCTGGGTTTTGTTTGGTGGATTTGCTCCAATTAGCAAAAAGGTTATTACTGAAGATGATATTGTTCCCGAGAAGACACCTCCTAAACTTAGCAG : CATCACTGATGGTCAAGTCAGTCCTGTAGATGGTGAACTTTCAAAGTCTAGCTTGGAAAACAATAAATGCTATCTTTTGGATTGCGGTGCTGAGGTGTTTGTTTGGATTGGTCGTGTAACTCAACTGGAGGAGAGGAAAGCTGCCATTCAAACTGCAGAG : GAATATCTTGTCTCTGAAAATAGACCCAAGGCAACGCGTGTAACCCGGGTTATTCAAGGTTATGAAACCCATTCATTCAAGTCCAACTTTGACTCTTGGCCATCAGGATCTGCACCTGCCCCTGAAGAGGGAAGAGGAAAAGTAGCAG : CTTTGCTGAAGCAGCAAGGTGCTGGCGTCAAAGGTGCCAGCAAAAGTGCTCCTGTAATTGAGGAAGTGCCTCCGTTGCTTGAAGAGGGTGGAAAATTAGAG : GTATGGCGCATAAATGGTAATGCAAAGACACCTGTCCCAAAAGAAGATATTGGTAAATTCTACAGTGGAGATTGCTATGTGGTTCTCTACAACTACCATTCTCATGAAAGGAGAGACGATTACTATCTATGTTGGTGGATTGGAAAGGATAGTATTGAG : GAGGACCAAATCACGGCTGCTCGATTGGCCAGTACAATGTGCAATTCACTCAAAGGAAGACCTGTGCTG : GGTCGAGTGTTTCAAGGGAAAGAACCTCCACAGTTTGTTGCAATCTTCCAGCCCATGTTGGTCCTTAAG : GGTGGTTTGAGCACTGGCTACAAAAACTATATTGCTGACAAAGGCTTGAATGATGAAACCTATACTGCTGATTCAGTTGCACTTATTCGGTTATCTGGAACTTCTGTGCATAATAACAAAGCGGTTCAAGTGGATGCT : GTGCCAAGTTCACTGAACTCTAATGAGTGTTTTCTTCTGCAATCTGGCTCTTCATTATTCAGTTGGCATGGTAACCAGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAG : CCAGGAGCAACAGTGAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAGTGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAG : GAAAATTTGAG : GTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCAGTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAG : AAATACGTGGAGATGGCT : GCAAAAGCCAGT : GCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAG : AATCAGCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCATCTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCATTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGTACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTG : AAAGTGATCTTTCTACTGCTGAGGTCCAAGATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG : GCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTGGTTTTTTTCGATTGGAAATCAGCAGTCAGGTGGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCATGTATTTTGTTAATTAAAAGGGTGTATACATTATGTTGTAACCTATACAAAAAGGAATATAACATTTGGGGTTTGCCATCAAGAGACCTTTGTGGCTCTGCTCTTGTTTTCGTTTTTTAAACGGTTGTATCCCAGGCCAGCTTGCATGCAGCTCGACTATTCCACCGAGGGCGATGCTTTGGTTCCTGAATTACTTATAAGTTCACATATTGGCCATAGATATTTATATCATATGTATTTGAGGTTTGTTTGGTTGCTAAATCAAAAGGACATTGTATCAAGAGTTAATCTCTTGGTGGTTTGCAATTCCATTATTGGAGAGTTTTGTTGAACAACTTTGTTAATGTTTAATGATTTACATTTATAATTAAGTGGTGTTGCTTGTAACAATTTTTTAAAATTTTTAATTCTTTTGGGATCAA</gDNA_template>
            <first_frame> N  G  R  C  L  P  S  S  S  V  K  D  S  I  F  F  N  I  S  I  S  S  S  S  *  F  L  S  L  H  L  C  L  H  K  N  I  *  I  C  L  N  F  L  L  F  F  V  L  D  F  R  I  Y  I  L  S  L  C  I  S  A  K  K  K  R  I  S  K  K  *  L  V  R  Y  N  H  F  P  G  K  G  R  K  G  E  V  Q  N  I  Q  S  W  N  P  I  T  S  I  I  H  F  L  F  G  V  P  L  F  H  I  S  P  A  L  H  N  P  F  F  F  C  V  L  N  T  L  L  V  Y  L  L  C  G  G  R  V  F  A  A  *  I  S  L  *  R  R  N  S :   W  F  C  Q  N  I  E  I  A  V  V  R  N  F  S  I  P  V  S  F  V  E  R  S  G  N  K  E  D  F  A  Q  C  L  A  L  *  K  L  W  I  L  H  F  R  V  Q  V  K  E   : *  G  L  K  F  G  E  L  R  I  S  N  Q  F  L  C  Q  N  L  I  M  V  N  F  T  P  E  I  H  T  S  S  C  R :   Q  L  Q  E  R  V  V  L  I  C  M  I  Y  I  S  G  L  E  R  I  L  V  R :   M  K  L  E  L  Q  L  S  K  Q  W  S  L  M  W  S  L  E  G  E  Q  Y  S  I  E  K  S  K  V  T  K  L  T  N  F  C  H  T  S  N  H  V  L  Y  L  W  R  V  V  L  H  L  G  S  R  N  Q  R  R  K  N  L  K  Q  S  C  I  F  A  R  V  N  E  *  *  G  *  S  R :   F  H  S  P  G  P  L  *  I  M  M  M  C  S  F  W  T  L  K  T  R  Y  I  N  S  M  V  Q  T  P  I  S  K  K  G  P  K  H  W  K  L  F  S  F  *  R  K  N  I  M  R  G  R  V  M  L  Q  L  L  :  M  M  E  I  C  K  L  S  L  I  L  D  H  S  G  F  C  L  V  D  L  L  Q  L  A  K  R  L  L  L  K  M  I  L  F  P  R  R  H  L  L  N  L  A   : A  S  L  M  V  K  S  V  L  *  M  V  N  F  Q  S  L  A  W  K  T  I  N  A  I  F  W  I  A  V  L  R  C  L  F  G  L  V  V  *  L  N  W  R  R  G  K  L  P  F  K  L  Q  R :   N  I  L  S  L  K  I  D  P  R  Q  R  V  *  P  G  L  F  K  V  M  K  P  I  H  S  S  P  T  L  T  L  G  H  Q  D  L  H  L  P  L  K  R  E  E  E  K  *  Q  :  L  C  *  S  S  K  V  L  A  S  K  V  P  A  K  V  L  L  *  L  R  K  C  L  R  C  L  K  R  V  E  N  *  R :   Y  G  A  *  M  V  M  Q  R  H  L  S  Q  K  K  I  L  V  N  S  T  V  E  I  A  M  W  F  S  T  T  T  I  L  M  K  G  E  T  I  T  I  Y  V  G  G  L  E  R  I  V  L  R :   R  T  K  S  R  L  L  D  W  P  V  Q  C  A  I  H  S  K  E  D  L  C  W :   V  E  C  F  K  G  K  N  L  H  S  L  L  Q  S  S  S  P  C  W  S  L  R :   V  V  *  A  L  A  T  K  T  I  L  L  T  K  A  *  M  M  K  P  I  L  L  I  Q  L  H  L  F  G  Y  L  E  L  L  C  I  I  T  K  R  F  K  W  M  L :   C  Q  V  H  *  T  L  M  S  V  F  F  C  N  L  A  L  H  Y  S  V  G  M  V  T  R  V  L  M  S  S  S  N  *  Q  Q  R  L  Q  N  S  *  S :   Q  E  Q  Q  *  N  T  L  K  K  E  Q  R  A  L  L  S  G  L  P  L  E  E  N  K  V  I  P  A  R  K  W  L  Q  K  S  P  G  I  P  T  C  L  L  I  H  L  I  K  :  E  N  L  R :   L  K  K  S  T  T  L  L  K  M  I  Y  *  P  R  M  S  Y  Y  S  T  H  M  L  K  C  L  F  G  L  V  S  Q  Q  T  P  K  K  S  R  A  L  L  K  L  D  R :   N  T  W  R  W  L :   Q  K  P  V :   L  M  E  T  H  S  R  R  R  L  C  Y  S  L  G  L  V  M  L  Q  R :   I  S  K  G  Q  M  G  Q  V  G  Q  P  K  G  L  Q  R  *  L  L  *  T  R  L  S  V  P  H  L  P  Q  N  L  V  L  H  R  G  L  L  E  Q  V  R  L  L  H  K  E  Q  L  Q  *  L  H  Y  L  T  F  L  Q  L  R  K  S  S  R  V  R  V  V  L  L  S  N  Q  T  E  A  H  L  Y  D  Q  A  E  A  L  L  F  D  Q  *  T  L  A  L  L  :  K  V  I  F  L  L  L  R  S  K  I  P  K  K  F  Q  N  L  R  R  L  L  S  L  L  K  L  M  G  Q  N  Q  S  R  M  R  V  E  M  K  V  V  K  L  Y  L  V  M  N  S  *  R  L  N  L  T  T  L  S  P  G  L  I  L  S  E  E  R :   P  I  Y  R  M  K  N  L  C  L  Y  L  V  *  R  K  K  H  S  T  S  C  L  N  G  N  K  I  C  T  K  G  K  L  I  S  S  R  S  C  I  G  E  T  K  W  P  V  A  I  L  L  L  Q  F  S  T  S  V  P  M  F  L  A  R  A  T  Y  F  Y  R  Y  I  L  P  G  S  C  M  *  H  F  F  S  F  A  S  L  N  D  H  S  S  W  *  F  Y  F  Y  D  F  V  M  P  A  *  S  L  V  F  F  D  W  K  S  A  V  R  W  L  I  L  *  F  D  Q  C  I  R  V  C  V  H  *  S  H  V  F  C  *  L  K  G  C  I  H  Y  V  V  T  Y  T  K  R  N  I  T  F  G  V  C  H  Q  E  T  F  V  A  L  L  L  F  S  F  F  K  R  L  Y  P  R  P  A  C  M  Q  L  D  Y  S  T  E  G  D  A  L  V  P  E  L  L  I  S  S  H  I  G  H  R  Y  L  Y  H  M  Y  L  R  F  V  W  L  L  N  Q  K  D  I  V  S  R  V  N  L  L  V  V  C  N  S  I  I  G  E  F  C  *  T  T  L  L  M  F  N  D  L  H  L  *  L  S  G  V  A  C  N  N  F  L  K  F  L  I  L  L  G  S  </first_frame>
            <second_frame>  M  A  G  A  S  L  L  H  L  S  K  T  Q  F  F  S  T  F  Q  Y  L  L  L  H  S  F  S  L  Y  T  S  V  S  I  K  I  Y  K  F  V  *  I  F  F  F  F  L  F  L  I  F  V  Y  I  Y  C  L  S  V  Y  L  Q  K  K  K  E  Y  Q  K  N  N  *  Y  G  T  I  I  F  Q  A  K  G  E  K  G  R  S  K  I  Y  N  L  G  T  P  L  L  Q  L  F  T  S  F  L  V  Y  H  F  F  I  F  R  Q  L  C  I  T  P  F  S  S  V  F  *  I  P  F  W  F  I  F  S  V  E  G  E  F  L  L  H  R  S  L  C  R  G  G  I   : V  G  F  V  R  I  L  R  *  L  W  L  E  T  S  A  F  Q  F  P  L  L  K  E  V  V  T  R  R  T  L  H  N  V  W  L  C  E  N  F  G  S  C  I  S  G  C  R  S  K  S  :  R  D  *  N  L  E  N  *  G  F  P  T  S  S  F  A  K  I  *  L  W  *  I  L  L  R  R  F  I  H  H  L  A   : D  N  F  R  K  G  W  C  L  F  V  *  Y  T  F  L  A  W  K  E  Y  *  S   : G  *  S  W  N  C  S  Y  Q  N  S  G  A  *  C  G  P  W  R  A  S  S  T  V  S  R  S  P  R  S  R  N  *  Q  I  F  V  I  L  Q  T  M  Y  Y  T  S  G  G  W  C  C  I  W  V  Q  E  T  R  G  G  R  I  *  N  K  A  V  Y  L  Q  G  *  T  S  S  K  D  E  A   : G  S  I  L  P  V  L  S  K  S  *  *  C  V  H  S  G  H  *  R  Q  D  I  S  I  Q  W  C  K  L  Q  Y  P  R  K  G  Q  S  I  G  S  Y  S  V  F  E  G  K  I  S  *  G  D  V  *  C  C  N  C  * :   *  W  K  F  A  S  *  V  *  F  W  I  I  L  G  F  V  W  W  I  C  S  N  *  Q  K  G  Y  Y  *  R  *  Y  C  S  R  E  D  T  S  *  T  *  Q  :  H  H  *  W  S  S  Q  S  C  R  W  *  T  F  K  V  *  L  G  K  Q  *  M  L  S  F  G  L  R  C  *  G  V  C  L  D  W  S  C  N  S  T  G  G  E  E  S  C  H  S  N  C  R   : G  I  S  C  L  *  K  *  T  Q  G  N  A  C  N  P  G  Y  S  R  L  *  N  P  F  I  Q  V  Q  L  *  L  L  A  I  R  I  C  T  C  P  *  R  G  K  R  K  S  S  S :   F  A  E  A  A  R  C  W  R  Q  R  C  Q  Q  K  C  S  C  N  *  G  S  A  S  V  A  *  R  G  W  K  I  R   : G  M  A  H  K  W  *  C  K  D  T  C  P  K  R  R  Y  W  *  I  L  Q  W  R  L  L  C  G  S  L  Q  L  P  F  S  *  K  E  R  R  L  L  S  M  L  V  D  W  K  G  *  Y  *   : G  G  P  N  H  G  C  S  I  G  Q  Y  N  V  Q  F  T  Q  R  K  T  C  A   : G  S  S  V  S  R  E  R  T  S  T  V  C  C  N  L  P  A  H  V  G  P  *   : G  W  F  E  H  W  L  Q  K  L  Y  C  *  Q  R  L  E  *  *  N  L  Y  C  *  F  S  C  T  Y  S  V  I  W  N  F  C  A  *  *  Q  S  G  S  S  G  C   : C  A  K  F  T  E  L  *  *  V  F  S  S  A  I  W  L  F  I  I  Q  L  A  W  *  P  E  F  L  *  A  A  A  I  S  S  K  G  C  R  I  L  E   : A  R  S  N  S  E  T  H  *  R  R  N  R  E  L  C  F  L  V  C  P  W  R  K  T  K  L  Y  Q  Q  E  S  G  S  R  S  L  Q  G  S  P  L  V  C  L  F  I  *  *  R :   K  I  *   : G  *  R  N  L  Q  L  C  S  R  *  F  I  D  R  G  C  L  T  T  R  H  T  C  *  S  V  C  L  G  W  S  V  S  R  L  Q  R  K  A  E  R  F  *  N  W  T   : E  I  R  G  D  G   : C  K  S  Q   : C  S  W  K  L  I  P  E  E  G  Y  A  T  L  W  G  W  S  C  F  R   : E  S  A  K  V  K  W  G  R  W  A  N  P  K  G  F  S  V  S  C  F  K  L  G  F  Q  F  P  I  S  P  K  I  W  F  C  T  E  A  C  W  S  K  S  G  F  F  T  K  S  S  C  N  S  C  I  I  *  R  S  Y  S  *  E  K  A  V  E  *  E  W  F  S  C  P  I  K  Q  K  L  T  C  T  I  K  Q  K  L  S  C  S  I  S  R  L  W  P  C  * :   K  *  S  F  Y  C  *  G  P  R  F  R  K  S  F  R  T  *  G  D  C  *  A  C  *  N  *  W  V  R  T  R  A  G  *  G  W  K  *  K  W  S  S  Y  I  *  L  *  T  A  E  G  *  I  *  Q  P  C  H  R  D  *  F  *  A  K  R   : G  L  S  I  G  *  R  I  Y  V  C  T  W  Y  E  E  R  S  I  L  Q  V  A  *  M  E  T  R  Y  A  Q  K  E  N  *  S  L  L  D  P  A  S  E  K  P  N  G  L  L  L  S  C  C  C  N  S  R  H  P  F  P  C  F  L  P  E  Q  P  T  F  I  G  T  Y  C  L  D  R  V  C  S  I  F  F  H  L  L  L  S  M  T  I  A  P  G  S  F  I  F  T  I  L  *  C  L  L  E  V  W  F  F  S  I  G  N  Q  Q  S  G  G  *  F  F  D  L  I  S  V  S  E  F  V  F  I  E  V  M  Y  F  V  N  *  K  G  V  Y  I  M  L  *  P  I  Q  K  G  I  *  H  L  G  F  A  I  K  R  P  L  W  L  C  S  C  F  R  F  L  N  G  C  I  P  G  Q  L  A  C  S  S  T  I  P  P  R  A  M  L  W  F  L  N  Y  L  *  V  H  I  L  A  I  D  I  Y  I  I  C  I  *  G  L  F  G  C  *  I  K  R  T  L  Y  Q  E  L  I  S  W  W  F  A  I  P  L  L  E  S  F  V  E  Q  L  C  *  C  L  M  I  Y  I  Y  N  *  V  V  L  L  V  T  I  F  *  N  F  *  F  F  W  D  Q </second_frame>
            <third_frame>   W  P  V  P  P  F  F  I  C  Q  R  L  N  F  F  Q  H  F  N  I  F  F  F  I  V  S  L  S  T  P  L  S  P  *  K  Y  I  N  L  S  E  F  S  S  F  F  C  S  *  F  S  Y  I  Y  T  V  S  L  Y  I  C  K  K  K  K  N  I  K  K  I  I  S  T  V  Q  S  F  S  R  Q  R  E  K  R  G  G  P  K  Y  T  I  L  E  P  H  Y  F  N  Y  S  L  P  F  W  C  T  T  F  S  Y  F  A  S  F  A  *  P  L  F  L  L  C  F  E  Y  P  F  G  L  S  S  L  W  R  E  S  F  C  C  I  D  L  S  V  E  E  E  *  :  L  V  L  S  E  Y  *  D  S  C  G  *  K  L  Q  H  S  S  F  L  C  *  K  K  W  *  Q  G  G  L  C  T  M  S  G  S  V  K  T  L  D  P  A  F  Q  G  A  G  Q  R  V :   G  T  E  I  W  R  I  E  D  F  Q  P  V  P  L  P  K  S  D  Y  G  K  F  Y  S  G  D  S  Y  I  I  L  Q  :  T  T  S  G  K  G  G  A  Y  L  Y  D  I  H  F  W  L  G  K  N  T  S  Q  :  D  E  A  G  T  A  A  I  K  T  V  E  L  D  V  V  L  G  G  R  A  V  Q  Y  R  E  V  Q  G  H  E  T  D  K  F  L  S  Y  F  K  P  C  I  I  P  L  E  G  G  V  A  S  G  F  K  K  P  E  E  E  E  F  E  T  K  L  Y  I  C  K  G  K  R  V  V  R  M  K  Q  :  V  P  F  S  R  S  S  L  N  H  D  D  V  F  I  L  D  T  K  D  K  I  Y  Q  F  N  G  A  N  S  N  I  Q  E  R  A  K  A  L  E  V  I  Q  F  L  K  E  K  Y  H  E  G  T  C  D  V  A  I  V   : D  D  G  N  L  Q  A  E  S  D  S  G  S  F  W  V  L  F  G  G  F  A  P  I  S  K  K  V  I  T  E  D  D  I  V  P  E  K  T  P  P  K  L  S  S :   I  T  D  G  Q  V  S  P  V  D  G  E  L  S  K  S  S  L  E  N  N  K  C  Y  L  L  D  C  G  A  E  V  F  V  W  I  G  R  V  T  Q  L  E  E  R  K  A  A  I  Q  T  A  E  :  E  Y  L  V  S  E  N  R  P  K  A  T  R  V  T  R  V  I  Q  G  Y  E  T  H  S  F  K  S  N  F  D  S  W  P  S  G  S  A  P  A  P  E  E  G  R  G  K  V  A   : A  L  L  K  Q  Q  G  A  G  V  K  G  A  S  K  S  A  P  V  I  E  E  V  P  P  L  L  E  E  G  G  K  L  E  :  V  W  R  I  N  G  N  A  K  T  P  V  P  K  E  D  I  G  K  F  Y  S  G  D  C  Y  V  V  L  Y  N  Y  H  S  H  E  R  R  D  D  Y  Y  L  C  W  W  I  G  K  D  S  I  E  :  E  D  Q  I  T  A  A  R  L  A  S  T  M  C  N  S  L  K  G  R  P  V  L  :  G  R  V  F  Q  G  K  E  P  P  Q  F  V  A  I  F  Q  P  M  L  V  L  K  :  G  G  L  S  T  G  Y  K  N  Y  I  A  D  K  G  L  N  D  E  T  Y  T  A  D  S  V  A  L  I  R  L  S  G  T  S  V  H  N  N  K  A  V  Q  V  D  A  :  V  P  S  S  L  N  S  N  E  C  F  L  L  Q  S  G  S  S  L  F  S  W  H  G  N  Q  S  S  Y  E  Q  Q  Q  L  A  A  K  V  A  E  F  L  K  :  P  G  A  T  V  K  H  T  K  E  G  T  E  S  S  A  F  W  F  A  L  G  G  K  Q  S  Y  T  S  K  K  V  A  P  E  V  S  R  D  P  H  L  F  A  Y  S  F  N  K   : G  K  F  E  :  V  E  E  I  Y  N  F  A  Q  D  D  L  L  T  E  D  V  L  L  L  D  T  H  A  E  V  F  V  W  V  G  Q  S  A  D  S  K  E  K  Q  S  A  F  E  I  G  Q  :  K  Y  V  E  M  A  :  A  K  A  S  :  A  H  G  N  S  F  Q  K  K  V  M  L  L  F  G  V  G  H  A  S  E  :  N  Q  Q  R  S  N  G  A  G  G  P  T  Q  R  A  S  A  L  A  A  L  N  S  A  F  S  S  P  S  P  P  K  S  G  S  A  P  R  P  A  G  A  S  Q  A  S  S  Q  R  A  A  A  I  A  A  L  S  N  V  L  T  A  E  K  K  Q  S  S  E  S  G  S  P  V  Q  S  N  R  S  S  P  V  R  S  S  R  S  S  P  V  R  S  V  D  S  G  P  A   : E  S  D  L  S  T  A  E  V  Q  D  S  E  K  V  S  E  P  K  E  I  V  E  P  A  E  T  N  G  S  E  P  E  Q  D  E  G  G  N  E  S  G  Q  A  I  F  S  Y  E  Q  L  K  A  K  S  D  N  P  V  T  G  I  D  F  K  R  R  E  :  A  Y  L  S  D  E  E  F  M  S  V  L  G  M  K  K  E  A  F  Y  K  L  P  K  W  K  Q  D  M  H  K  R  K  T  D  L  F  *  I  L  H  R  R  N  Q  M  A  C  C  Y  L  V  V  A  I  L  D  I  R  S  H  V  S  C  Q  S  N  L  L  L  *  V  H  I  A  W  I  V  Y  V  A  F  F  F  I  C  F  S  Q  *  P  *  L  L  V  V  L  F  L  R  F  C  D  A  C  L  K  F  G  F  F  R  L  E  I  S  S  Q  V  V  D  S  L  I  *  S  V  Y  P  S  L  C  S  L  K  S  C  I  L  L  I  K  R  V  Y  T  L  C  C  N  L  Y  K  K  E  Y  N  I  W  G  L  P  S  R  D  L  C  G  S  A  L  V  F  V  F  *  T  V  V  S  Q  A  S  L  H  A  A  R  L  F  H  R  G  R  C  F  G  S  *  I  T  Y  K  F  T  Y  W  P  *  I  F  I  S  Y  V  F  E  V  C  L  V  A  K  S  K  G  H  C  I  K  S  *  S  L  G  G  L  Q  F  H  Y  W  R  V  L  L  N  N  F  V  N  V  *  *  F  T  F  I  I  K  W  C  C  L  *  Q  F  F  K  I  F  N  S  F  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98440" stop="98513"/>
                    <exon start="98697" stop="98796"/>
                    <exon start="98875" stop="98943"/>
                    <exon start="99021" stop="99257"/>
                    <exon start="99362" stop="99539"/>
                    <exon start="100412" stop="100544"/>
                    <exon start="102351" stop="102510"/>
                    <exon start="102584" stop="102731"/>
                    <exon start="102805" stop="102905"/>
                    <exon start="102992" stop="103150"/>
                    <exon start="103805" stop="103873"/>
                    <exon start="103948" stop="104016"/>
                    <exon start="104108" stop="104245"/>
                    <exon start="105008" stop="105136"/>
                    <exon start="106341" stop="106488"/>
                    <exon start="106586" stop="106596"/>
                    <exon start="106688" stop="106828"/>
                    <exon start="106912" stop="106929"/>
                    <exon start="107026" stop="107037"/>
                    <exon start="107637" stop="107699"/>
                    <exon start="108263" stop="108557"/>
                    <exon start="108847" stop="109049"/>
                    <exon start="109528" stop="109641"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2766</number_coding_nucleotides>
                  <number_encoded_amino_acids>922</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGGLCTMSGSVKTLDPAFQGAGQRVGTEIWRIEDFQPVPLPKSDYGKFYSGDSYIILQTTSGKGGAYLYDIHFWLGKNTSQDEAGTAAIKTVELDVVLGGRAVQYREVQGHETDKFLSYFKPCIIPLEGGVASGFKKPEEEEFETKLYICKGKRVVRMKQVPFSRSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHEGTCDVAIVDDGNLQAESDSGSFWVLFGGFAPISKKVITEDDIVPEKTPPKLSSITDGQVSPVDGELSKSSLENNKCYLLDCGAEVFVWIGRVTQLEERKAAIQTAEEYLVSENRPKATRVTRVIQGYETHSFKSNFDSWPSGSAPAPEEGRGKVAALLKQQGAGVKGASKSAPVIEEVPPLLEEGGKLEVWRINGNAKTPVPKEDIGKFYSGDCYVVLYNYHSHERRDDYYLCWWIGKDSIEEDQITAARLASTMCNSLKGRPVLGRVFQGKEPPQFVAIFQPMLVLKGGLSTGYKNYIADKGLNDETYTADSVALIRLSGTSVHNNKAVQVDAVPSSLNSNECFLLQSGSSLFSWHGNQSSYEQQQLAAKVAEFLKPGATVKHTKEGTESSAFWFALGGKQSYTSKKVAPEVSRDPHLFAYSFNKGKFEVEEIYNFAQDDLLTEDVLLLDTHAEVFVWVGQSADSKEKQSAFEIGQKYVEMAAKASAHGNSFQKKVMLLFGVGHASENQQRSNGAGGPTQRASALAALNSAFSSPSPPKSGSAPRPAGASQASSQRAAAIAALSNVLTAEKKQSSESGSPVQSNRSSPVRSSRSSPVRSVDSGPAESDLSTAEVQDSEKVSEPKEIVEPAETNGSEPEQDEGGNESGQAIFSYEQLKAKSDNPVTGIDFKRREAYLSDEEFMSVLGMKKEAFYKLPKWKQDMHKRKTDLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109949" stop="110266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKGCIHYVVTYTKRNITFGVCHQETFVALLLFSFFKRLYPRPACMQLDYSTEGDALVPELLISSHIGHRYLYHMYLRFVWLLNQKDIVSRVNLLVVCNSIIGEFC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96208" stop="96417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVRYNHFPGKGRKGEVQNIQSWNPITSIIHFLFGVPLFHISPALHNPFFFCVLNTLLVYLLCGGRVFAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109632" stop="109835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLDPASEKPNGLLLSCCCNSRHPFPCFLPEQPTFIGTYCLDRVCSIFFHLLLSMTIAPGSFIFTIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="99238" e_stop="99257"/>
            <exon e_start="99362" e_stop="99461"/>
            <exon e_start="108877" e_stop="109049"/>
            <exon e_start="109528" e_stop="110357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99238" e_stop="99257" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.873">
            <gDNA_intron_boundary i_start="99258" i_stop="99361" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99362" e_stop="99461" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99462" i_stop="108876" i_length="9415"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108877" e_stop="109049" e_length="173"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.907">
            <gDNA_intron_boundary i_start="109050" i_stop="109527" i_length="478"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="109528" e_stop="110357" e_length="830"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99238" stop="99257"/>
              <exon start="99362" stop="99461"/>
              <exon start="108877" stop="109049"/>
              <exon start="109528" stop="109747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108935" stop="109049"/>
              <exon start="109528" stop="110012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418172" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108938" stop="109049"/>
              <exon start="109528" stop="109976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109564" stop="110045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109700" stop="110357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTAGTAAGGATGAAGCAG : GTTCCATTCTCCCGGTCCTCTCTAAATCATGATGATGTGTTCATTCTGGACACTAAAGACAAGATATATCAATTCAATGGTGCAAACTCCAATATCCAAG : ATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGTGGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTTTAAGCGAAGAGAG : GCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGCCTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAGATCCTGCATCGGAGAAACCAAATGGCCTGTTGCTATCTTGTTGTTGCAATTCTCGACATCCGTTCCCATGTTTCTTGCCAGAGCAACCTACTTTTATAGGTACATATTGCCTGGATCGTGTATGTAGCATTTTTTTTCATTTGCTTCTCTCAATGACCATAGCTCCTGGTAGTTTTATTTTTACGATTTTGTGATGCCTGCTTGAAGTTTGGTTTTTTTCGATTGGAAATCAGCAGTCAGGTGGTTGATTCTTTGATTTGATCAGTGTATCCGAGTTTGTGTTCATTGAAGTCATGTATTTTGTTAATTAAAAGGGTGTATACATTATGTTGTAACCTATACAAAAAGGAATATAACATTTGGGGTTTGCCATCAAGAGACCTTTGTGGCTCTGCTCTTGTTTTCGTTTTTTAAACGGTTGTATCCCAGGCCAGCTTGCATGCAGCTCGACTATTCCACCGAGGGCGATGCTTTGGTTCCTGAATTACTTATAAGTTCACATATTGGCCATAGATATTTATATCATATGTATTTGAGGTTTGTTTGGTTGCTAAATCAAAAGGACATTGTATCAAGAGTTAATCTCTTGGTGGTTTGCAATTCCATTATTGGAGAGTTTTGTTGAACAACTTTGTTAATGTTTAATGATTTACATTTATAATTAAGTGGTGTTGCTTGTAACAATTTTTTAAAATTTTTAATTCTTTTGGGATCAA</gDNA_template>
            <first_frame> E  *  *  G  *  S  R :   F  H  S  P  G  P  L  *  I  M  M  M  C  S  F  W  T  L  K  T  R  Y  I  N  S  M  V  Q  T  P  I  S  K  :  I  P  K  K  F  Q  N  L  R  R  L  L  S  L  L  K  L  M  G  Q  N  Q  S  R  M  R  V  E  M  K  V  V  K  L  Y  L  V  M  N  S  *  R  L  N  L  T  T  L  S  P  G  L  I  L  S  E  E  R :   P  I  Y  R  M  K  N  L  C  L  Y  L  V  *  R  K  K  H  S  T  S  C  L  N  G  N  K  I  C  T  K  G  K  L  I  S  S  R  S  C  I  G  E  T  K  W  P  V  A  I  L  L  L  Q  F  S  T  S  V  P  M  F  L  A  R  A  T  Y  F  Y  R  Y  I  L  P  G  S  C  M  *  H  F  F  S  F  A  S  L  N  D  H  S  S  W  *  F  Y  F  Y  D  F  V  M  P  A  *  S  L  V  F  F  D  W  K  S  A  V  R  W  L  I  L  *  F  D  Q  C  I  R  V  C  V  H  *  S  H  V  F  C  *  L  K  G  C  I  H  Y  V  V  T  Y  T  K  R  N  I  T  F  G  V  C  H  Q  E  T  F  V  A  L  L  L  F  S  F  F  K  R  L  Y  P  R  P  A  C  M  Q  L  D  Y  S  T  E  G  D  A  L  V  P  E  L  L  I  S  S  H  I  G  H  R  Y  L  Y  H  M  Y  L  R  F  V  W  L  L  N  Q  K  D  I  V  S  R  V  N  L  L  V  V  C  N  S  I  I  G  E  F  C  *  T  T  L  L  M  F  N  D  L  H  L  *  L  S  G  V  A  C  N  N  F  L  K  F  L  I  L  L  G  S  </first_frame>
            <second_frame>  S  S  K  D  E  A   : G  S  I  L  P  V  L  S  K  S  *  *  C  V  H  S  G  H  *  R  Q  D  I  S  I  Q  W  C  K  L  Q  Y  P  R :   F  R  K  S  F  R  T  *  G  D  C  *  A  C  *  N  *  W  V  R  T  R  A  G  *  G  W  K  *  K  W  S  S  Y  I  *  L  *  T  A  E  G  *  I  *  Q  P  C  H  R  D  *  F  *  A  K  R   : G  L  S  I  G  *  R  I  Y  V  C  T  W  Y  E  E  R  S  I  L  Q  V  A  *  M  E  T  R  Y  A  Q  K  E  N  *  S  L  L  D  P  A  S  E  K  P  N  G  L  L  L  S  C  C  C  N  S  R  H  P  F  P  C  F  L  P  E  Q  P  T  F  I  G  T  Y  C  L  D  R  V  C  S  I  F  F  H  L  L  L  S  M  T  I  A  P  G  S  F  I  F  T  I  L  *  C  L  L  E  V  W  F  F  S  I  G  N  Q  Q  S  G  G  *  F  F  D  L  I  S  V  S  E  F  V  F  I  E  V  M  Y  F  V  N  *  K  G  V  Y  I  M  L  *  P  I  Q  K  G  I  *  H  L  G  F  A  I  K  R  P  L  W  L  C  S  C  F  R  F  L  N  G  C  I  P  G  Q  L  A  C  S  S  T  I  P  P  R  A  M  L  W  F  L  N  Y  L  *  V  H  I  L  A  I  D  I  Y  I  I  C  I  *  G  L  F  G  C  *  I  K  R  T  L  Y  Q  E  L  I  S  W  W  F  A  I  P  L  L  E  S  F  V  E  Q  L  C  *  C  L  M  I  Y  I  Y  N  *  V  V  L  L  V  T  I  F  *  N  F  *  F  F  W  D  Q </second_frame>
            <third_frame>   V  V  R  M  K  Q  :  V  P  F  S  R  S  S  L  N  H  D  D  V  F  I  L  D  T  K  D  K  I  Y  Q  F  N  G  A  N  S  N  I  Q   : D  S  E  K  V  S  E  P  K  E  I  V  E  P  A  E  T  N  G  S  E  P  E  Q  D  E  G  G  N  E  S  G  Q  A  I  F  S  Y  E  Q  L  K  A  K  S  D  N  P  V  T  G  I  D  F  K  R  R  E  :  A  Y  L  S  D  E  E  F  M  S  V  L  G  M  K  K  E  A  F  Y  K  L  P  K  W  K  Q  D  M  H  K  R  K  T  D  L  F  *  I  L  H  R  R  N  Q  M  A  C  C  Y  L  V  V  A  I  L  D  I  R  S  H  V  S  C  Q  S  N  L  L  L  *  V  H  I  A  W  I  V  Y  V  A  F  F  F  I  C  F  S  Q  *  P  *  L  L  V  V  L  F  L  R  F  C  D  A  C  L  K  F  G  F  F  R  L  E  I  S  S  Q  V  V  D  S  L  I  *  S  V  Y  P  S  L  C  S  L  K  S  C  I  L  L  I  K  R  V  Y  T  L  C  C  N  L  Y  K  K  E  Y  N  I  W  G  L  P  S  R  D  L  C  G  S  A  L  V  F  V  F  *  T  V  V  S  Q  A  S  L  H  A  A  R  L  F  H  R  G  R  C  F  G  S  *  I  T  Y  K  F  T  Y  W  P  *  I  F  I  S  Y  V  F  E  V  C  L  V  A  K  S  K  G  H  C  I  K  S  *  S  L  G  G  L  Q  F  H  Y  W  R  V  L  L  N  N  F  V  N  V  *  *  F  T  F  I  I  K  W  C  C  L  *  Q  F  F  K  I  F  N  S  F  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99240" stop="99257"/>
                    <exon start="99362" stop="99461"/>
                    <exon start="108877" stop="109049"/>
                    <exon start="109528" stop="109641"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVRMKQVPFSRSSLNHDDVFILDTKDKIYQFNGANSNIQDSEKVSEPKEIVEPAETNGSEPEQDEGGNESGQAIFSYEQLKAKSDNPVTGIDFKRREAYLSDEEFMSVLGMKKEAFYKLPKWKQDMHKRKTDLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109949" stop="110266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKGCIHYVVTYTKRNITFGVCHQETFVALLLFSFFKRLYPRPACMQLDYSTEGDALVPELLISSHIGHRYLYHMYLRFVWLLNQKDIVSRVNLLVVCNSIIGEFC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109632" stop="109835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLDPASEKPNGLLLSCCCNSRHPFPCFLPEQPTFIGTYCLDRVCSIFFHLLLSMTIAPGSFIFTIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="110020" PGL_stop="109540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110020" e_stop="109540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="110020" e_stop="109540" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110020" stop="109540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109991" stop="109540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTGATGGCAAACCCCAAATGTTATATTCCTTTTTGTATAGGTTACAACATAATGTATACACCCTTTTAATTAACAAAATACATGACTTCAATGAACACAAACTCGGATACACTGATCAAATCAAAGAATCAACCACCTGACTGCTGATTTCCAATCGAAAAAAACCAAACTTCAAGCAGGCATCACAAAATCGTAAAAATAAAACTACCAGGAGCTATGGTCATTGAGAGAAGCAAATGAAAAAAAATGCTACATACACGATCCAGGCAATATGTACCTATAAAAGTAGGTTGCTCTGGCAAGAAACATGGGAACGGATGTCGAGAATTGCAACAACAAGATAGCAACAGGCCATTTGGTTTCTCCGATGCAGGATCTAGAAGAGATCAGTTTTCCTTTTGTGCATATCTTGTTTCCATTTAGGCAACTTGTAGAATGCTTCTTTCTTCATACCAAGTACAGACATAAATTCTTCATC</gDNA_template>
            <first_frame> L  L  M  A  N  P  K  C  Y  I  P  F  C  I  G  Y  N  I  M  Y  T  P  F  *  L  T  K  Y  M  T  S  M  N  T  N  S  D  T  L  I  K  S  K  N  Q  P  P  D  C  *  F  P  I  E  K  N  Q  T  S  S  R  H  H  K  I  V  K  I  K  L  P  G  A  M  V  I  E  R  S  K  *  K  K  M  L  H  T  R  S  R  Q  Y  V  P  I  K  V  G  C  S  G  K  K  H  G  N  G  C  R  E  L  Q  Q  Q  D  S  N  R  P  F  G  F  S  D  A  G  S  R  R  D  Q  F  S  F  C  A  Y  L  V  S  I  *  A  T  C  R  M  L  L  S  S  Y  Q  V  Q  T  *  I  L  H  </first_frame>
            <second_frame>  S  *  W  Q  T  P  N  V  I  F  L  F  V  *  V  T  T  *  C  I  H  P  F  N  *  Q  N  T  *  L  Q  *  T  Q  T  R  I  H  *  S  N  Q  R  I  N  H  L  T  A  D  F  Q  S  K  K  T  K  L  Q  A  G  I  T  K  S  *  K  *  N  Y  Q  E  L  W  S  L  R  E  A  N  E  K  K  C  Y  I  H  D  P  G  N  M  Y  L  *  K  *  V  A  L  A  R  N  M  G  T  D  V  E  N  C  N  N  K  I  A  T  G  H  L  V  S  P  M  Q  D  L  E  E  I  S  F  P  F  V  H  I  L  F  P  F  R  Q  L  V  E  C  F  F  L  H  T  K  Y  R  H  K  F  F  I </second_frame>
            <third_frame>   L  D  G  K  P  Q  M  L  Y  S  F  L  Y  R  L  Q  H  N  V  Y  T  L  L  I  N  K  I  H  D  F  N  E  H  K  L  G  Y  T  D  Q  I  K  E  S  T  T  *  L  L  I  S  N  R  K  K  P  N  F  K  Q  A  S  Q  N  R  K  N  K  T  T  R  S  Y  G  H  *  E  K  Q  M  K  K  N  A  T  Y  T  I  Q  A  I  C  T  Y  K  S  R  L  L  W  Q  E  T  W  E  R  M  S  R  I  A  T  T  R  *  Q  Q  A  I  W  F  L  R  C  R  I  *  K  R  S  V  F  L  L  C  I  S  C  F  H  L  G  N  L  *  N  A  S  F  F  I  P  S  T  D  I  N  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0143K21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="112730" PGL_stop="114207"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112730" e_stop="112834"/>
            <exon e_start="112987" e_stop="114207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="112730" e_stop="112834" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112835" i_stop="112986" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="112987" e_stop="114207" e_length="1221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112730" stop="112834"/>
              <exon start="112987" stop="113397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113253" stop="113488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113413" stop="114149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113413" stop="114074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113413" stop="113999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113922" stop="114207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGA : ATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGCTGATTTTATGATATTGCTTAATGCATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAACAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAACTGGTTTTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACACCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGAAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTCCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  :  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  *  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  M  H  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  V  C  T  D  P  Y  F  Y  V  F  L  L  V  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  R  F  *  L  G  L  D  L  L  L  H  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  R  N  S  *  N  *  *  F  K  V  D  V  L  V  M  M  T  S  R  F  W  E  *  *  M  L  N  I  D  S  Y  *  T  G  F  F  Y  *  *  V  *  V  F  R  I  T  F  C  C  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  P  G  F  G  S  *  Q  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  H  L  Y  F  S  L  R  G  Y  K  T  L  E  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  S  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  L  * </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E :   Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  D  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  C  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  W  F  V  L  T  P  T  F  M  F  F  F  L  L  F  V  E  C  N  K  R  A  V  I  F  D  S  T  V  T  Q  A  S  L  R  H  T  G  S  S  G  *  A  N  A  S  S  L  D  W  I  F  S  F  M  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  L  E  T  L  R  I  S  S  L  K  *  M  F  L  *  *  *  L  P  G  F  G  N  N  R  C  *  I  L  I  V  I  E  L  V  F  F  I  N  E  F  K  S  S  A  L  L  S  V  A  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  G  P  D  L  G  R  D  K  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  T  F  T  F  P  *  E  A  I  R  L  *  K  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  P  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *   : N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  I  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  A  D  F  M  I  L  L  N  A  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  G  L  Y  *  P  L  L  L  C  F  S  S  C  Y  L  W  S  A  T  N  V  P  S  S  S  T  Q  Q  *  L  K  P  V  F  V  T  P  D  L  Q  G  E  L  T  L  L  A  W  T  G  S  S  P  S  C  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  S  *  K  L  L  E  L  V  V  *  S  R  C  S  C  D  D  D  F  Q  V  L  G  I  I  D  V  E  Y  *  *  L  L  N  W  F  F  L  L  M  S  L  S  L  P  H  Y  F  L  L  L  L  H  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  A  R  I  W  V  V  T  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  S  A  R  Q  E  A  S  E  P  A  T  G  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113971" stop="114207"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGHLYFSLRGYKTLEKFHSFILSFVLLLESNWYLGDTNWYLTISTLFRRWLELEQRLRQHQHRQDKKRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="114646" PGL_stop="114214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114646" e_stop="114214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="114646" e_stop="114214" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114646" stop="114214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGTCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTAGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGTTTGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCATGGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  V  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  I  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  R  G  V  T  A  L  V  S  D  G  L  G  V  C  P  L  P  L  E  D  V  L  P  R  P  L  P  W  P  L  A  A  V  L  </first_frame>
            <second_frame>  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  G  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  S  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  F  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  L  P  L  F  F </second_frame>
            <third_frame>   L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  A  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  *  G  R  L  G  W  H  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  L  L  S  R  *  R  S  H  C  P  S  I  R  W  A  R  C  L  S  S  S  P  R  G  R  P  P  T  T  S  T  M  A  P  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114644" stop="114399"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEDWRFQFQELTEKFMLIICHYRASSQTWKRAYFQWNIHAGSHSSRMLYLRSLRCWCRKHWGCLALIRQPAKISQNLIDHL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114412" stop="114215"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISRVGWGGISSFCTCSVSPSSPSLITSSVGRGVTALVSDGLGVCPLPLEDVLPRPLPWPLAAVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="114281" PGL_stop="114834"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114281" e_stop="114834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="114281" e_stop="114834" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114281" stop="114834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCTACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCAAAATGAGGAAATGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGACTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGCCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGAAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  N  *  T  S  A  K  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  V  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  D  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  P  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  K  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  L  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  E  M  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  T  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  Y  R  L  R  R  *  *  E  K  G  R  M  G  K  L  N  K  C  K  M  R  K  C  H  P  N  L  P  *  R  *  S  I  R  F  W  L  I  L  A  G  C  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  *  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  A  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  E  T  P  K  C  G  G  G  H  I  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114282" stop="114833"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPLPTEEVIREGEDGETEQVQNEEMPPQPTLEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATMTPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHIECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="115891" PGL_stop="115561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115891" e_stop="115561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="115891" e_stop="115561" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115891" stop="115561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCTGTCCCAGGCTTGGCTAACGTCACTGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAATTTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACCAG</gDNA_template>
            <first_frame> G  L  S  Q  A  W  L  T  S  L  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  N  V  I  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  R  K  P  C  N  H  K  P  </first_frame>
            <second_frame>  V  C  P  R  L  G  *  R  H  C  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  F  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  G  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  Q  C  N  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0143K21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="116882" PGL_stop="116133"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116882" e_stop="116133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="116882" e_stop="116133" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116882" stop="116357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116811" stop="116133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116811" stop="116453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTCACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTGGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGCTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAATCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGTATAGAAATGGGGCGTGTG</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  H  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  G  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  *  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  *  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  I  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  I  E  M  G  R  V </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  A  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  V  *  K  W  G  V   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  S  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  W  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  L  V  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  L  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  N  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  Y  R  N  G  A  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116686" stop="116489"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTSISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="118363" PGL_stop="118187"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118363" e_stop="118187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="118363" e_stop="118187" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118363" stop="118187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCGAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  R  M  E  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  E  W  S  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0143K21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="119934" PGL_stop="120692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119934" e_stop="120038"/>
            <exon e_start="120191" e_stop="120692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="119934" e_stop="120038" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="120039" i_stop="120190" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="120191" e_stop="120692" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119934" stop="120038"/>
              <exon start="120191" stop="120601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120457" stop="120692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGA : ATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGCTGATTTTATGATATTGCTTAATGCATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  :  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  *  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  M  H  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  V  C  T  D  P  Y  F  Y  V  F  L  L  V  I  C  </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E :   Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  D  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  C  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  W  F  V  L  T  P  T  F  M  F  F  F  L  L  F  V </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *   : N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  I  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  A  D  F  M  I  L  L  N  A  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  G  L  Y  *  P  L  L  L  C  F  S  S  C  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0143K21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="127109" PGL_stop="128234"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127127" e_stop="128234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="127127" e_stop="128234" e_length="1108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127127" stop="127739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127127" stop="127710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127127" stop="127647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127127" stop="127354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127137" stop="127539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127158" stop="127757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127159" stop="127821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127192" stop="127526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127259" stop="127973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127299" stop="128012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127300" stop="127942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127416" stop="128034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127416" stop="127611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127535" stop="128234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127535" stop="127980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGATGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATC</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  H  *  K  F  F  H  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  F  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  Y  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  S  I  L  F  S  A  S  S  Y  F  C  F  C  F  C  L  L  T  L  *  I  Q  V  I  V  R  I  T  I  L  R  N  L  D  S  F  C  I  *  G  F  W  R  L  K  P  L  *  F  S  T  L  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  V  S  I  L  N  T  *  F  I  C  H  L  *  Q  R  K  K  K  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  S  K  F  S  G  V  D  F  K  R  C  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  P  K  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  I  A  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  I  T  E  N  F  F  I  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  Y  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  I  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  L  Y  Y  F  L  L  H  L  I  S  V  S  V  S  V  Y  *  L  Y  K  Y  K  L  L  *  E  *  Q  S  *  E  I  *  T  V  S  V  F  E  V  S  G  D  *  N  L  Y  D  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  E  T  V  C  V  K  I  C  S  L  L  L  V  F  *  I  L  N  L  S  A  I  C  D  R  E  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  R  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  *  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  I </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  S  L  K  I  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  I  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  L  L  R  T  H  S  S  F  C  G  L  G  L  I  L  V  F  Y  I  I  F  C  F  I  L  F  L  F  L  F  L  F  I  N  F  I  N  T  S  Y  C  K  N  N  N  L  K  K  F  R  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  I  F  Y  S  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  I  Y  L  P  F  V  T  E  K  K  K  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  F  K  V  F  W  S  R  L  *  E  M  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  T  K  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127870" stop="128172"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMQQKMFFYLTTLSLQKFTKENVPVMSDETPADERFLVTEAWTHSDFLCKNYILSGLQDDLYNVYSNAKTSKELWDALEKKYKTEDAGMKKFIVAKISGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127357" stop="127599"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITLGTVRGLNLLRTHSSFCGLGLILVFYIIFCFILFLFLFLFINFINTSYCKNNNLKKFRQFLYLRFLEIKTFMIFYSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="127109" e_stop="127304"/>
            <exon e_start="127733" e_stop="128234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.807" acc_prob="0.995" e_score="0.888"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.888">
            <gDNA_exon_boundary e_start="127109" e_stop="127304" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.807" acc_prob="0.995">
            <gDNA_intron_boundary i_start="127305" i_stop="127732" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="127733" e_stop="128234" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127109" stop="127304"/>
              <exon start="127733" stop="128234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAG : AGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGATGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATC</gDNA_template>
            <first_frame> K  Q  I  S  L  N  R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  H  *  K  F  F  H  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *   : E  K  K  K  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  F  K  V  F  W  S  R  L  *  E  M  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  T  K  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *   </first_frame>
            <second_frame>  N  R  F  H  *  T  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  I  T  E  N  F  F  I  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  :  R  K  K  K  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  S  K  F  S  G  V  D  F  K  R  C  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  P  K  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  I  A  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  </second_frame>
            <third_frame>   T  D  F  T  E  Q  T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  S  L  K  I  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R :   E  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  R  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  *  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127870" stop="128172"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMQQKMFFYLTTLSLQKFTKENVPVMSDETPADERFLVTEAWTHSDFLCKNYILSGLQDDLYNVYSNAKTSKELWDALEKKYKTEDAGMKKFIVAKISGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0143K21.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127230" stop="127304"/>
                    <exon start="127733" stop="127909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQSVDRLSLCDLLLFLSSLKLKKFERKKKTNSSQTNAGTVSAATTTVAHNRSNAALAPAEKPSKFSGVDFKRCSKRCSSISLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 372 chains have been computed
$ 
$ memory statistics:
$ 468560 bytes spliced alignments in total
$ 142 spliced alignments have been stored
$ 3299 bytes was the average size of a spliced alignment
$ 32416 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1706 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 475 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:58:43
-->
