##gff-version 3
# This output was generated with AUGUSTUS (version 2.0.2).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de).
# Please cite: Mario Stanke and Stephan Waack (2003) "Gene prediction with a hidden Markov model and
# a new intron submodel", Bioinformatics, Vol. 19 Suppl. 2, ii215-ii225
# No extrinsic information on sequences given.
# Initialising the parameters ...
# human version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C07SLm0032F07-6ZqGr/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequence and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 138452, name = C07SLm0032F07.1) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
###
C07SLm0032F07.1	AUGUSTUS_ab_initio	gene	7863	9090	1	-	.	ID=g1
C07SLm0032F07.1	AUGUSTUS_ab_initio	transcript	7863	9090	.	-	.	ID=g1.t1;Parent=g1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	7863	8927	.	-	0	ID=g1.t1.cds;Parent=g1.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	9064	9090	.	-	0	ID=g1.t1.cds;Parent=g1.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	start_codon	9088	9090	.	-	0	Parent=g1.t1
# protein sequence = [MLQKLTLLEVLSIKIRGTYFDVFDIRPLELFLPKSLRKLKLQQTEGDKFVHWLEKIRDIPWFNLQSLSLVLDVISDSL
# LRTVVNSLPLLVELDLEDRPFMDPTIEDLTNVGLQRVQSCKHLITLAIVRSSMNYRTAFRRVNNMGMFLLSEGCGRLESVKLGGFANVTDAGFSTILN
# SCRKLKKLEVLNSCLLSDLAFHNMRGVARSLIELRLLSCRLLTSEALEGLSLLSKLEVLDTSGCRSIGNPCLFVISRVTTLTKLNLAEADITDKGLAL
# LGMGNLGITQLCIRGCKRVTDKGIERLFCAEGKIGKTLSLLDVSRMPGITDAAIFTIASAAKALTDLSLRYCFHVTDAGVKMLLDRPNHK]
###
###
C07SLm0032F07.1	AUGUSTUS_ab_initio	gene	24816	28073	1	+	.	ID=g2
C07SLm0032F07.1	AUGUSTUS_ab_initio	transcript	24816	28073	.	+	.	ID=g2.t1;Parent=g2
C07SLm0032F07.1	AUGUSTUS_ab_initio	start_codon	24816	24818	.	+	0	Parent=g2.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	24816	28073	.	+	0	ID=g2.t1.cds;Parent=g2.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	stop_codon	28071	28073	.	+	0	Parent=g2.t1
# protein sequence = [MALPTLLRVNFSGNHFYGNLSSIASSCSFEFLDLSANNFSEVLVLEPLLKSCDNIKYLNVSGNSIKGVVLKFGPSLLQ
# LDLSSNTISDFGILSYALSNCQNLNLLNFSSNKIAGKLKSSISSCKSLSVLDLSRNNLTGELNDLDLGTCQNLTVLNLSFNNLTSVEFPPSLANCQSL
# NTLNIAHNSIRMEIPVELLVKLKSLKRLVLAHNQFFDKIPSELGQSCSTLEELDLSGNRLTGELPSTFKLCSSLFSLNLGNNELSGDFLNTVISSLTN
# LRYLYLPFNNITGYVPKSLVNCTKLQVLDLSSNAFIGNVPSEFCFAASGFPLETMLLASNYLTGTVPKQLGHCRNLRKIDLSFNNLVGSIPLEIWNLP
# NLSELVMWANNLTGEIPEGICINGGNLQTLILNNNFISGTLPQSISKCTNLVWVSLSSNRLSGEIPQGIGNLANLAILQLGNNSLTGPIPRGLGSCRN
# LIWLDLNSNALTGSIPLELADQAGHVNPGMASGKQFAFVRNEGGTECRGAGGLVEFEGIREERLAILPMVHFCPSTRIYSGRTMYTFTSNGSMIYLDL
# SYNSLSGTIPDNLGSLSFLQVLNLGHNNFTGTIPFNFGGLKIVGVLDLSHNSLQGFIPPSLGGLSFLSDLDVSNNNLSGTIPSGGQLTTFPASRYENN
# SGLCGVPLPPCGSGNGHHSSSIYHHGNKKPTTIGMVVGIMVSFICIILLVIALYKIKKTQNEEEKRDKYIDSLPTSGSSSWKLSTVPEPLSINVATFE
# KPLRKLTFGHLLEATNGFSSESMIGSGGFGEVYKAQLRDGSTVAIKKLVHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKWGS
# LESVLHDGGKGGMFLDWPARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLVNALDTHLSVSTLAGTPGYVPPEYYQSF
# RCTAKGDVYSYGVILLELLSGKRPIDPRVFGDDNNLVGWAKQLHNDKQSHEILDPELITNLSGDAELYHYLKVAFECLDEKSYKRPTMIQVMTKFKEV
# QTDSESDILDGISVKGSILEESQEREP]
###
###
C07SLm0032F07.1	AUGUSTUS_ab_initio	gene	37860	64554	1	+	.	ID=g3
C07SLm0032F07.1	AUGUSTUS_ab_initio	transcript	37860	64554	.	+	.	ID=g3.t1;Parent=g3
C07SLm0032F07.1	AUGUSTUS_ab_initio	start_codon	37860	37862	.	+	0	Parent=g3.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	37860	38057	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	39862	40712	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	40815	40973	.	+	1	ID=g3.t1.cds;Parent=g3.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	41069	41217	.	+	1	ID=g3.t1.cds;Parent=g3.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	41353	41546	.	+	2	ID=g3.t1.cds;Parent=g3.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	42866	43021	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	59327	59347	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	59545	59732	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	60136	61267	.	+	1	ID=g3.t1.cds;Parent=g3.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	61657	64554	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	stop_codon	64552	64554	.	+	0	Parent=g3.t1
# protein sequence = [MNSRGGGLLERIAARAGFNAPKLNTESLRPADLRQNQGVRSPYLTIPPGLSPTTLLESPVFLSNSLVNPSNFSQQGFP
# NIEVSVHSQNSLVSHRVEATQNPTQNGTLQQSSDFPRFSAEKDVMANNVTLDSRTFQTVGSAVDHSPPLDEPQDEDIDQRGGGDPNVAGAPAEDGYNW
# RKYGQKQVKGSEYPRSYYKCTHPTCPVKKKVERSPEGHITEIIYKGAHNHPKPPPNRRSALGSTNSLGDLQVDGAEQGASGVNGDLGQANFHKAPGGG
# GGFDWRNNNRDANLGSEHCNRSAPFSAQNNTRLESGDAVDVSSNFSNDEDEDDRGTHGSVSQGYEGEGDESESKRRKLETYSADMTGATRAIREPRVV
# VQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHVNSGRPPQLGPNPGFSYGMNQ
# QGGLSSLAMAGFHPNQNKPGEVPMHPYLGQPRPMHDMGFMFPKEEPKLAFQTQIDAKVEQTQIFLLKLAGDIQYLEQLMAIRYDLLIFFFFILLVDRL
# SVDFNEERHKKKKKGEFYQQMLSIENIPPDPCHISLLKSSSSDERPSSDNKIVDLSNSDLDDNNNNKFSIRTRRKDIKTNWPFSQKNLQLCLRHGATT
# DLLPPFQSDKECAVDNRSTDKDNIVTSEEKHVELDDDPVPTSSSSGRICMPKLAVDCRNINSSGSDREKVFRSTLTSRSCSEIDSVPTAETRKQRCSG
# AEAVNLLEPLVKKPPMSNKSGSTVQQQSAKKCRLMVKFGNGTDRNVDEADTTTNSFMVSEAMASKVCPVCKTFTSSSNTTLNAHIDQCLSGESSTAKW
# TANPKVIKHRIKSRKTRLMVDIYATAKSCTLEDLDRRNGTNWASNPTLSIREITEVPGVEKLEKPPPVNLECTANEGAVYIDANGTKLRILSKFNDEQ
# LPSSKPVIDPLQKKMVDGDKRSKFILTKKRKKHHNLLKSASHTKKFCLSKPDHCPKIKSGQESTFCPRENVDKMDCLNKDLRSADQMLSNGLATIKQW
# ACSKRTGLTRKISDKDNHQLSGADMSTGVQSDNDVLPQTYPFKKRSGLVKSPRSSVCLPESSQRMGNMLLDQPQEERSEEPPSLHKKVVDFSSSQSSL
# PSNKKRSLVLQRCKGKHLKVDGHSVNNHPKMTTGHALSVKNVRVGRNTDNYSEVNCEQSTAHPSFSSKARKLSSLRKNLSSVSEGPARGVKYNLKWKT
# ASFKKSSRSSSSESEEAEVFQTEGEKLCLRGNLSETKIQGSRNRDWVNVKRSEVLSIRKNREGIMASNLEGTLGLKSSQSSALTHSDNETGSILAGAS
# DALGSVKANHQSKSDKTMDPTVSELAGRGDFTSFSKPMDAGSDEMSGPARTHCESQLFSEEYKGSFLGTKAATCSQDPILGVEGMIDGDVHDVAELGS
# NADGQGNYFLEVDPIPIPGPPGSFLPSPGRMSSEDLHGSSSLSSSRIQSSADHPEFIDQDSSGSPTSAASTVSNSTMARTGSRYSGNLYDSGRDSSEM
# LKCHTGWEDKRSSFSGRTVDLLVENSVALRPTANTGNDKDGLDKFDANALFPGKGTFRFTNDKPCCCVRKEGGTSQGFAVNREESQLLQRRAIALSPF
# PASENQLSRDSLTRCNNIILKSNSFSLSDSSSGPETNDPTKSSATAHTQFGISADSEFKLPTRESESFSPSASNPVLRLMGKDLMVINKDEDSPLKRS
# SHSNSMIDQANTRSRNEDLNSFHQVDAHNRLVPHFPQSGDPVQHFDVRLLNGFKSQDSYSRPQVQPSPTSPASFLCKSSGSGLMGAPFGRQDYLGRGN
# LHTVRNGPNETCDMKKFVATPISHWQNATSVGPNAVREIIVIDDSPENEANSPYTMNSGKMQISSGYTSRFVDLCENRPRGETGAAQNANLLTQVNEL
# PAKTWNVNPDGCSLVHPSSFSASSSPAGPFRSSLYYSPGFS]
###
###
C07SLm0032F07.1	AUGUSTUS_ab_initio	gene	69991	70572	1	+	.	ID=g4
C07SLm0032F07.1	AUGUSTUS_ab_initio	transcript	69991	70572	.	+	.	ID=g4.t1;Parent=g4
C07SLm0032F07.1	AUGUSTUS_ab_initio	start_codon	69991	69993	.	+	0	Parent=g4.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	69991	70572	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	stop_codon	70570	70572	.	+	0	Parent=g4.t1
# protein sequence = [MPSPPTSVTTATYTTIPIAGGDVINRSVQNIYTFLSRSRPWPEFIAGASAVDIPTSFSDAAIRVRRNLKYFSVNYAIL
# ISACAACSLIGTPILLIFFCLIFASWLIFLFFREDPMVVLGHQVSDLAVISGLATVSAIVVWYTGILNSLMIGIMMGVLLSVIHGSLRNPEGLFVDED
# DAVSSGLISNAERGSLH]
###
###
C07SLm0032F07.1	AUGUSTUS_ab_initio	gene	71336	74236	1	-	.	ID=g5
C07SLm0032F07.1	AUGUSTUS_ab_initio	transcript	71336	74236	.	-	.	ID=g5.t1;Parent=g5
C07SLm0032F07.1	AUGUSTUS_ab_initio	stop_codon	71336	71338	.	-	0	Parent=g5.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	71336	74236	.	-	0	ID=g5.t1.cds;Parent=g5.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	start_codon	74234	74236	.	-	0	Parent=g5.t1
# protein sequence = [MDEVEIPVVDTQSLTIKIANSGQQKLTATSSAYNSPSLISPPSSAFVSALQSPYISPRATLVPNSNQETPIVPLTSVV
# HPSPPVSYCGSQSDDVPSTSYTPPPERYDFSDDPTDTKLKIVTCVPVSGPETDPRISFSFPVPRISFAKGSVSPASNAKLRSCDVYIGFHGQNPNLVR
# FCKWLKSELELQGIACFIADRAKYADNQSHEIADKVICSVTFGVIVVTGCSFSNHHSLEEIRFFAQKKNLIPLFFNTDANEIASLFNHNGDTKKCKEA
# LDVILKCHEFRLETDESNWRSCVSKAAGILRAKLGRKSVVEKCTEGFEELPFPRNKSFVGREKEIIDIETTLFGCGDSFEQESVVPSAKGGTPGQSEG
# LADDESEAVVGRGKYINLELGKNKETNKEAWVERNSLKRPKYRKSRSGKDKNLSMSVVCINGLAGVGKTDLALEFAYRYSQRYKMVLWVGGEARYFRQ
# NILNLSLNLGLDVSADAEKERGRIRSFDEQESEAFKRVKREMFRDMPYLLIIDNLETEKEWWEGKDLHDLIPTNTGGTHVIITTQLSRVMNFDPLQLQ
# PLSTPNAMILIRGRRKKEYQAGEVEFLHKFDEKLGRSSFGLWVVGSLLSELAILPSALFEAVNQVPVEETASCSNLSIPHQQFCRDNPFLMKTLVFCT
# ALLQQSNDSRDSVASRMLQVGAWFAPAPISVNLLAAAAKKIPVNRNRFKKWTKCMKVALCFYSGQCLTSQAWKSEEESALLLVKLGLARKANRQTGCW
# IQFHPITQIFAKRKDGLVAAKANIQGARKLGNPVTDSDHLWACAFLVFGFKSEPPVVQLKAMDMVFFIRKTALPLAISAFTTFSRCNSALELLKVCTN
# VLEEAEKSFVSQIQDWCHGSLCWKKKLQSNQRVDEYVWQEVTLLKATLLETRAKLLLRGGHFDSGEDLCRTCISIRTVMLGHNHAQTLAAQQTLANLV
# RMRSKI]
###
###
C07SLm0032F07.1	AUGUSTUS_ab_initio	gene	77746	84060	1	+	.	ID=g6
C07SLm0032F07.1	AUGUSTUS_ab_initio	transcript	77746	84060	.	+	.	ID=g6.t1;Parent=g6
C07SLm0032F07.1	AUGUSTUS_ab_initio	start_codon	77746	77748	.	+	0	Parent=g6.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	77746	78784	.	+	0	ID=g6.t1.cds;Parent=g6.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	80427	81023	.	+	2	ID=g6.t1.cds;Parent=g6.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	83027	83344	.	+	2	ID=g6.t1.cds;Parent=g6.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	83468	84060	.	+	2	ID=g6.t1.cds;Parent=g6.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	stop_codon	84058	84060	.	+	0	Parent=g6.t1
# protein sequence = [MITPPIFENANQSKVESSDGSSPPGDNSSNNNLDDVKGKGIDIKEVEDYSTPLVKSSPITKGFGLKKWKRMKRDAQRQ
# DGDSSVNSGKLLKRGLASEFANAEKPATFAVGRIQKSDGSVSSTNAVFMNPGVLSDGFGVIGDSGLAMGPNFIAVSESENSEDRSSRSSTAASAPKAR
# YEAPVHLGYPSDKHWLRSLSGKSLSTSAQKPHQRKGRAETCKKPRGERVKIEKENSHSSMESDSRSSNFLFMQGDFATSNGTKGERSMNYDEESSDEA
# QDRERPIGEELGAGLERGNDRESENVSKEDLAAESPWDVNEEKSENHGSSTDHEPLTESIFNFHAAQEALASEIQKFKEIGKDTNFGHSLEDVGIPSN
# FTSDDSDFPRSSTSVLSQNRDGAQSSLNSLESEVYSLKQNILLLQNQVQEAADLAKSKEARVTELEAILSSSSKSEEETTEGEFESLFRLKIEAEVQY
# VALSTTAQKLRSAAVYQLTLLEEQKTLASEQAQMVHVLGDAEAKAVVLKTQTKKLETYCEDLASTAEKLKLQKKVSTKFVYSLVIQVGMGTLLINQIS
# EKEVLGDEKDDVMGFGDEDEISKDNKRRICRVCKKVFGSGKALGGHMRIHVESRSKKEKSKPREEVDVENCNNDELVPICKVCASVPGWTVTAKRGRK
# PNAEEEDEQLQDAVHHLMLLANGDSIESVVTGHDHTPEEELEKTNSNSLTSKAENEEFVSEELDRKKKKRKLRHLNSVHDSPASVAVTATPEKYECNT
# CGKSFATHQALGGHKSSHNKLRIVIENSNDSIIEEAAASSSKLLGDSKLSTTGGRIADFDLNELPSDHDNELAGNPDYFPFFSI]
###
###
C07SLm0032F07.1	AUGUSTUS_ab_initio	gene	87233	97620	1	-	.	ID=g7
C07SLm0032F07.1	AUGUSTUS_ab_initio	transcript	87233	97620	.	-	.	ID=g7.t1;Parent=g7
C07SLm0032F07.1	AUGUSTUS_ab_initio	stop_codon	87233	87235	.	-	0	Parent=g7.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	87233	87636	.	-	2	ID=g7.t1.cds;Parent=g7.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	89097	89379	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	89474	89560	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	90085	90195	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	90685	90855	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	90988	91244	.	-	2	ID=g7.t1.cds;Parent=g7.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	93198	93480	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	93563	93649	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	96304	96390	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	97336	97419	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	97522	97620	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	start_codon	97618	97620	.	-	0	Parent=g7.t1
# protein sequence = [MKWRTKTIGEKVRQRILQYHMRNCRENVPQSDKEHKTIKKDCVYSFRWYARSISPSFSNFLHTSLSPDGRLLVVVGAD
# PVGMLVDARNGMHTSLSPDGNLLVIVGDDPEGMLVDSRSGVVVSSLSGHVDSSYASAWHPDGQTFATGNEDNTCRIWDIRNLSKSVTVLNDTFGPIMS
# IRYTSDGRYMAMAEYEDLVHIFDVKSGYVVEQEIDFFVNFDDFVLKIISLKCNMSHQQGDDEMEELDDFIDEFEGIDLDGFDSDVNERQCIDLDGFGS
# DVDDFLDVELSDVESYVDDLDETDMTYRSMKDISAADVRNGRDIQGIPWERATVTRERRRQRRLTEYQNYENIPPSDATPDKKHPESHSEGFTHTEVS
# TLAVKDKLLVAGGVEGELIVKHTSVSPDCRLLLVVGDDPDGMLIDSRNGMALAILPGHVDYSFASAWHPDGRTFATGNQDKTCRIWDCRNLSKSVTVL
# TGNLGAIRSISYTSDGRFMAMVESADFVHVLDVKSGYEVEQEIDFFGLRPLNKPTDSSLFLNKPIAFKPITKKPRNLAVKAELNPSVVISLSTGLSLF
# LGRFVFFNFQRENVAKQVPSQNGISHFEAGDVRAKEYISLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG]
###
###
C07SLm0032F07.1	AUGUSTUS_ab_initio	gene	100497	100700	1	-	.	ID=g8
C07SLm0032F07.1	AUGUSTUS_ab_initio	transcript	100497	100700	.	-	.	ID=g8.t1;Parent=g8
C07SLm0032F07.1	AUGUSTUS_ab_initio	stop_codon	100497	100499	.	-	0	Parent=g8.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	100497	100700	.	-	0	ID=g8.t1.cds;Parent=g8.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	start_codon	100698	100700	.	-	0	Parent=g8.t1
# protein sequence = [MKISNGIRSNSPVDAVCIYIIIWSNRSMELTVEIEVEVELLEVERVDTDSHTLRNNIAMVVVARLQS]
###
###
C07SLm0032F07.1	AUGUSTUS_ab_initio	gene	106727	108208	1	-	.	ID=g9
C07SLm0032F07.1	AUGUSTUS_ab_initio	transcript	106727	108208	.	-	.	ID=g9.t1;Parent=g9
C07SLm0032F07.1	AUGUSTUS_ab_initio	stop_codon	106727	106729	.	-	0	Parent=g9.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	106727	108208	.	-	0	ID=g9.t1.cds;Parent=g9.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	start_codon	108206	108208	.	-	0	Parent=g9.t1
# protein sequence = [MCREKKEVKQLHGQLILNGLIHRFPNGAKLVESYVGVSETDDALLVFNSSIQSPDTFAYNVMIRGLILSKRPIESLFL
# YERLVTDGLSPDSHTYTFVLKACSHMKAVLEGKTVHAQIMKKGIKPNTHICSSLISMYSCAGDMASARQVLDEFSEPNNVICPFNSMITGYMNEGLVE
# EAIEIFDTMGNKDTATWSVMLSGYVKNGMHEDALATFQKMMSYNVPLNEASLVCTLSSCGELGALDQGRWLHKYIINKRETVMSVNLGTALVDMYAKC
# GCIEFSYQLFEKMPRRDVVTWGVILSSFATHGQAKLCFQLFDKMIESGVEPNGVVFVAILSACSHAGLVEEGCHYFDQMVHQFGIRPSIEHFGCMVDL
# LGRAGRLAEAEQLILSMPEEPNSVILGALFNACRIHNDVERGRHLFKRLINLEPSPDRYKLAASLFANNGEDHEIRKLLNDKILETRCGLSNIQVDGV
# DHEFMVSDIANDKAQDVYETLGG]
###
###
C07SLm0032F07.1	AUGUSTUS_ab_initio	gene	109035	129066	1	-	.	ID=g10
C07SLm0032F07.1	AUGUSTUS_ab_initio	transcript	109035	129066	.	-	.	ID=g10.t1;Parent=g10
C07SLm0032F07.1	AUGUSTUS_ab_initio	stop_codon	109035	109037	.	-	0	Parent=g10.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	109035	109057	.	-	2	ID=g10.t1.cds;Parent=g10.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	109212	109421	.	-	2	ID=g10.t1.cds;Parent=g10.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	112334	112617	.	-	1	ID=g10.t1.cds;Parent=g10.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	113554	113684	.	-	0	ID=g10.t1.cds;Parent=g10.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	113985	114083	.	-	0	ID=g10.t1.cds;Parent=g10.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	114200	114239	.	-	1	ID=g10.t1.cds;Parent=g10.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	115783	116080	.	-	2	ID=g10.t1.cds;Parent=g10.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	120665	120756	.	-	1	ID=g10.t1.cds;Parent=g10.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	128960	129066	.	-	0	ID=g10.t1.cds;Parent=g10.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	start_codon	129064	129066	.	-	0	Parent=g10.t1
# protein sequence = [MSSGRYMAYSPSPSAPQSPHIAGLRSASSAIAEQENDKSRKFVMASKRIQKELKDLQKDPPASCSAEWLDAYDDVRER
# RSDFEVSEDERRRSRIGTFKKKALHASNKFTHSLKKRGKRKVDYRFPSVSIEDVRDAKEENAVCELRQRLLERNLLPSIHDDYHTLLRSNKGPWSDPE
# VMKLVYNVEATTVKEISRKLGDQRKIESYIQIRPSKARSSDSTAYCSCDDEFSLGDRGVTNEHGLLHWQEQSPVSSPMNRLPFEYWRKRTNVFPTNAL
# EERQGSSSSINDEAVQRVREIHPCMQRLHKLENLLEEINKKPAEIPAEKDRMLHQSLNRIKSVEVDLEKTKRVRLITCPISFEFQNYTVVTTQCKGPK
# YPAKQCCEALAEFACPYSEFVNDLTTDCASTMFSYINLHGKYPPGLFANLFKVLA]
###
###
C07SLm0032F07.1	AUGUSTUS_ab_initio	gene	135958	137047	1	+	.	ID=g11
C07SLm0032F07.1	AUGUSTUS_ab_initio	transcript	135958	137047	.	+	.	ID=g11.t1;Parent=g11
C07SLm0032F07.1	AUGUSTUS_ab_initio	start_codon	135958	135960	.	+	0	Parent=g11.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	135958	135982	.	+	0	ID=g11.t1.cds;Parent=g11.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	136089	136188	.	+	2	ID=g11.t1.cds;Parent=g11.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	136685	136763	.	+	1	ID=g11.t1.cds;Parent=g11.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	CDS	136898	137047	.	+	0	ID=g11.t1.cds;Parent=g11.t1
C07SLm0032F07.1	AUGUSTUS_ab_initio	stop_codon	137045	137047	.	+	0	Parent=g11.t1
# protein sequence = [MFFLTTGNGTVEVLAYPSLQAVNTLNAHTAGCYCIAIDPLGRWPVRTISFNHTGDYIASASEDLFIDIANVQSGRSVH
# QIPCRAAMNSVEWNPKHNLLAFAGDDKNKYQADEGVFLT]
###
# command line:
# /usr/bin/augustus.real --species=human --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C07SLm0032F07-6ZqGr/AUGUSTUS_ab_initio/seq_with_defline_removed