##gff-version 3
# This output was generated with AUGUSTUS (version 2.0.2).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de).
# Please cite: Mario Stanke and Stephan Waack (2003) "Gene prediction with a hidden Markov model and
# a new intron submodel", Bioinformatics, Vol. 19 Suppl. 2, ii215-ii225
# No extrinsic information on sequences given.
# Initialising the parameters ...
# human version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C07SLm0111C06-P2G61/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequence and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 138161, name = C07SLm0111C06.1) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
###
C07SLm0111C06.1	AUGUSTUS_ab_initio	gene	8335	15419	1	+	.	ID=g1
C07SLm0111C06.1	AUGUSTUS_ab_initio	transcript	8335	15419	.	+	.	ID=g1.t1;Parent=g1
C07SLm0111C06.1	AUGUSTUS_ab_initio	start_codon	8335	8337	.	+	0	Parent=g1.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	8335	8687	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	12610	13770	.	+	1	ID=g1.t1.cds;Parent=g1.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	13868	14733	.	+	1	ID=g1.t1.cds;Parent=g1.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	15319	15419	.	+	2	ID=g1.t1.cds;Parent=g1.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	stop_codon	15417	15419	.	+	0	Parent=g1.t1
# protein sequence = [MDRLSETTPDVAFLLSGFSSNLPSPLFGPPQDALKGKSHANSTCRDVWTEYHDMGIGGVKAVADYKVYTAGSVLDLLH
# FVAPKLMKRGSAHFSYGIADDLDDKKYEHYKYWSNPLETNEVSIRDQGIEVASEVQEEKEEETTKTGDTPSEENAEPNSSFGMFNEEEPQLALLSKEV
# DTQNKDLSASTCNFETDKSSKESIMKELESALKRVSDLENEGFDSQDDENEVINHDGGLNIKGNFEELRKGKSLSLDYDAESVASDFLDMLGIEHNQF
# SLSSESEPDSPRERLLRQFEKDTLADGGSLFNFDEDIDHQDFACDASTGSDWRSIYEDFDYSCNVEMPKIEIEATSNKIGASMLEDLETEALMYEWGL
# NERAFQRSPPRSSSGFGSPIDIPHEDPSELPPLGEGLGPFIKTKNGGFLRSVNPSLFKNAKSGGSLIMQVSSPVVVPAEMGSGIMDILHHLASIGIEK
# LSIQANKLMPLEDITGQTMQHIGWETAPSLDGTVRQEFLQHEFEYGKNMAGIQSNKGKLHRPKSSSKLESNSAGLDKDSEYVSLEDLAPLAMDKIEAL
# SIEGLRIQSGMSDEDTPSNVSSKPIGEFSAIEGKKVNFGGAVGLEGTGGLQLLDVKDNDGGGEVDGLMGLSLTLDEWMKLDAGEIDEISERTSKLLAA
# HHGTCTDLFRGRSKKRGKGKNCGLLGNSFTVALMVQLRDPLRNYEPVGTPMLALVQVERVFVTPKAKIYSTVSQVRKSNEDDDDNELKSPQKEAGGVD
# VKEEQIREDEEIPQYKITGVHVAGLKTEQEDIGDSTMAIKDFTLNHGESSLQIQQYGYRYSK]
###
###
C07SLm0111C06.1	AUGUSTUS_ab_initio	gene	15909	33572	1	-	.	ID=g2
C07SLm0111C06.1	AUGUSTUS_ab_initio	transcript	15909	33572	.	-	.	ID=g2.t1;Parent=g2
C07SLm0111C06.1	AUGUSTUS_ab_initio	stop_codon	15909	15911	.	-	0	Parent=g2.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	15909	16154	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	17489	17624	.	-	1	ID=g2.t1.cds;Parent=g2.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	19499	19629	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	24400	24564	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	26013	26129	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	33456	33572	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	start_codon	33570	33572	.	-	0	Parent=g2.t1
# protein sequence = [MCLILNGRVRTCDIRLFLSGRVRTHDMRLTHTSRVVLLQAALDHLVQRTDIDTSRIVVFGRSLGGAVGTVLTKNNPDK
# VAGLILENTFTSILDMAGVLLPFLKWVIGGSGSKGFKLLNFVVRSPWNTIDVIGEMEGGAQYNPRTVEEVFKDFTGRRTGMIKALTTGIDNFLFCCSV
# LKRLFNMMNDLPTIYEVVTGVAKKRVKDKSTVSNHSSNKSKSNSKAGKYSKPQVKDEDDGFDEEEEDEHGDTLCGACGENYASDEFWIFCDMCERWFH
# GNCVKITPAKAEHIKQYKCPSCSNKRIRP]
###
###
C07SLm0111C06.1	AUGUSTUS_ab_initio	gene	38826	48745	1	+	.	ID=g3
C07SLm0111C06.1	AUGUSTUS_ab_initio	transcript	38826	48745	.	+	.	ID=g3.t1;Parent=g3
C07SLm0111C06.1	AUGUSTUS_ab_initio	start_codon	38826	38828	.	+	0	Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	38826	38980	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	39069	39170	.	+	1	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	39894	40164	.	+	1	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	41216	41347	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	41442	41551	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	41674	41734	.	+	1	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	41920	42097	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	43533	43615	.	+	2	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	43698	43919	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	44919	45058	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	45421	45538	.	+	1	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	48025	48081	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	48233	48313	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	48442	48524	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	48622	48745	.	+	1	ID=g3.t1.cds;Parent=g3.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	stop_codon	48743	48745	.	+	0	Parent=g3.t1
# protein sequence = [MDRCDAKSLEDALITRVMVTPEEVITRTLDPEAALGSRDALAKTIYSRLFDWIVEKINISIGQDPNSKSIIGVLDIYG
# FESFKTNSMFPKSTHETFAQKLYQTFPKNKRFIKPKLSRTSFTISHYAGEVLLVRLYGNIYTFTVFNVRLKRLYDMQVTYQADLFLDKNKDYVVAEHQ
# LQLQSLMETLSSTEPHYIRCVKPNNALKPCIFENLNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFLLRFGVLAPEVLAGSYDDKVACQMILDKKGLK
# GYQMGKTKVFLRAGQMAELDARRAEVLGNAAKIIQRQIRTYIMRKEFVSLRQAAIQLQSCWRGALKEAKDKLEKKVEELTWRLQFEKRLRAELEETKA
# QEVGKLQEALHAMQKQVEEANAKVVQEREAARRAIEEAPPVIKETPVIVQDTEKINTLSAEVENLKALLASEKKATEEARDSSRDAEAKHTELASKLE
# TAERKVDQLQDSVQRLEEKLSNMESENQVLRQQALTMSPTGKALSTRPKTTIIQVIHQKPKKSLNEITNELCPVLSIQQLYRISTMYWDDKYGTHTVS
# SDVISSMRVMMTEDSNNAVSSSFLLDDDSSIPFSVDDISKTMQQIDIGDVEPPPLIRENSGFVFLHQRSS]
###
###
C07SLm0111C06.1	AUGUSTUS_ab_initio	gene	73626	76872	1	+	.	ID=g4
C07SLm0111C06.1	AUGUSTUS_ab_initio	transcript	73626	76872	.	+	.	ID=g4.t1;Parent=g4
C07SLm0111C06.1	AUGUSTUS_ab_initio	start_codon	73626	73628	.	+	0	Parent=g4.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	73626	73652	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	74345	74644	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	74847	74969	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	75987	76567	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	76644	76872	.	+	1	ID=g4.t1.cds;Parent=g4.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	stop_codon	76870	76872	.	+	0	Parent=g4.t1
# protein sequence = [MLMSTIFQKVDKKFEELIILIKANHSQLMQSISKENINFQADTSTFQSDKQTSQQIPVDLDDMGGVAEDGGGFSGKND
# EHHIVDDAGDVNVDGVGVAINEGEPIVSDPKDGDAHQSHQDLNEHIMDQAVDDNVHHNIPHVLPEKTTTDSSHIDVIFYYLRKKSKLCSMDQYRYTTT
# HCLFMSHVKNCYDRYYMDDDDDSLTTQEHIDRASVVSVHERSIINIIKGFGIPAALPWHLVDEVYIPINCDQQFHWVLAVVELKNRLIRVFDSSISTR
# KQTIPHEIKMLSKMLPSYLLDSGFFEENERTKFADCQAYKDNNNGSLLEPQVPFMIEFAQDIPTQESDSLDCGLYVTAFAEYISDQINISYADFNPDY
# LRQRYGALLWSYGNEKAKCGYVSDNDDPPKSRGVVTPPPEEDLVHIA]
###
###
C07SLm0111C06.1	AUGUSTUS_ab_initio	gene	77893	80660	1	-	.	ID=g5
C07SLm0111C06.1	AUGUSTUS_ab_initio	transcript	77893	80660	.	-	.	ID=g5.t1;Parent=g5
C07SLm0111C06.1	AUGUSTUS_ab_initio	stop_codon	77893	77895	.	-	0	Parent=g5.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	77893	78241	.	-	1	ID=g5.t1.cds;Parent=g5.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	80077	80197	.	-	2	ID=g5.t1.cds;Parent=g5.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	CDS	80474	80660	.	-	0	ID=g5.t1.cds;Parent=g5.t1
C07SLm0111C06.1	AUGUSTUS_ab_initio	start_codon	80658	80660	.	-	0	Parent=g5.t1
# protein sequence = [MNTSILMRHSGIWVNELQYENYKIDGIVVGDSISFSNLKAAIAAELDIDVSRKEIEIRYIVEDIVDVKTGQIYKDKAT
# LVDVMTKYKIKNNFNCKVKRSDQQRFQLDEIPCSHAIAVLKKKNVTDMNPYCSDYYKPDALAKTYEIPMMPMPDKKDWSDLKHVVAETVYPPRYRRSS
# GRSRKRRRKNADEKISVNTNCCGQCGQEGHNRRTCTFYPKEK]
###
# command line:
# /usr/bin/augustus.real --species=human --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C07SLm0111C06-P2G61/AUGUSTUS_ab_initio/seq_with_defline_removed