##gff-version 3
# This output was generated with AUGUSTUS (version 2.0.2).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de).
# Please cite: Mario Stanke and Stephan Waack (2003) "Gene prediction with a hidden Markov model and
# a new intron submodel", Bioinformatics, Vol. 19 Suppl. 2, ii215-ii225
# No extrinsic information on sequences given.
# Initialising the parameters ...
# human version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C07HBa0058M08-yE89f/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequence and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 121671, name = C07HBa0058M08.1) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
###
C07HBa0058M08.1	AUGUSTUS_ab_initio	gene	2186	38721	1	+	.	ID=g1
C07HBa0058M08.1	AUGUSTUS_ab_initio	transcript	2186	38721	.	+	.	ID=g1.t1;Parent=g1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	2186	2283	.	+	1	ID=g1.t1.cds;Parent=g1.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	16417	16571	.	+	2	ID=g1.t1.cds;Parent=g1.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	16803	17000	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	17131	17293	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	25919	26085	.	+	2	ID=g1.t1.cds;Parent=g1.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	37544	37741	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	37881	38043	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	38366	38721	.	+	2	ID=g1.t1.cds;Parent=g1.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	stop_codon	38719	38721	.	+	0	Parent=g1.t1
# protein sequence = [FKYIGFSIEENGDIDDDITHRIGARLYVNEVEGYTNAQLELNFYAKSCPKAEKIIKDFVQQQVPKAPNTAAAILRMHF
# HDCFVRGCDGSVLLNFTSTNGNQTEKLANPNLTLRGFSFIDAVKRLVEAECPGVVSCADIVALVARDAVVATGGPFWNVPTGRRDGTISNVSEANADI
# PAPTSNFTRLQQSFAKKGLDLNDLVLLSGIFLDASHAQLQLNFYAKSCPKAEKIIEDYVHKHIPNAPSLAAALLRLHFHDCFVRGCDGFILLNFTSST
# KNQTEKVAISNQSLRGFSFIDGVKKIVEAECPGVVSCADIVALITRDSVVVTVGPFWNVPTGRRDGKISNASEALENIPPPTSNLSSLQASFANKGLD
# LKDLVLLSGALGTQDPSLDSEYASNLKGEKCKSINDNTTIVEMDPGSFRTFDLSYYKLLFKRRGLFQSDAALTTSSTTKSYINQLVKGSLEEFNAEFA
# KAMEKMGRIEVKTGSFGEIRKQCAFVNK]
###
###
C07HBa0058M08.1	AUGUSTUS_ab_initio	gene	59350	61374	1	-	.	ID=g2
C07HBa0058M08.1	AUGUSTUS_ab_initio	transcript	59350	61374	.	-	.	ID=g2.t1;Parent=g2
C07HBa0058M08.1	AUGUSTUS_ab_initio	stop_codon	59350	59352	.	-	0	Parent=g2.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	59350	61374	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	start_codon	61372	61374	.	-	0	Parent=g2.t1
# protein sequence = [MISCNLIPLPSKTNLEPPRDTQDRPSSRANHHAHNLSFSRHIKEPSKYPKHNNLRNLLSVHTKNPHAIYKDIQRFAHQ
# NKLKEALTILDYLDHRGIPVNPTTFASLIAACVRLKSLTSAKIVHTHVIINGLENNEFLQTKVVNMYAACGSIEDAKKVFDKMPVRSVYPWNALLRGN
# VVLGGSKYGEVLGTFSDMRGLGVELNVYSFSCLIKSFAGASALFQGLKTHGLLIKNGFLGSDIVRTSLIDMYFKCGKVRLAHRVFEEVEERDVVMWGA
# IIAGFAHNKRQREALEYTRLMIREGLEVNSVILTTILPVIGEARASKLGKEVHAYVIKTKEYSKQLFIQSGLVDMYSKCGDIIAGRKVFYRSKERNAI
# SWTALISGYILNGRLEQALRSILWMQQEGFKPDLVTVATVLPVCGKLKELKYGKEIHAYAVKNGFLPNTSVSTCLMMMYSKCGLLQYSSRVFDSMAKR
# NVISWTAMMDSYIDSGCLEEALGVFRSMQLSKHRADSVAMGRILGVCGKLRLLKLGREIHGQILKKDIASVPFVSAELVKMYGSCGAIDKSRLSFDII
# PIKGSMTWTAIIEAYGLSGQYGAAINEFKQMISKGFNPNHFTFKVVLSICEKAGFADEGCQFFTMMTRKYKIKASEDHYTSIINLLHHVGHYEEAEKF
# VLLKQSST]
###
###
C07HBa0058M08.1	AUGUSTUS_ab_initio	gene	106161	110308	1	+	.	ID=g3
C07HBa0058M08.1	AUGUSTUS_ab_initio	transcript	106161	110308	.	+	.	ID=g3.t1;Parent=g3
C07HBa0058M08.1	AUGUSTUS_ab_initio	start_codon	106161	106163	.	+	0	Parent=g3.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	106161	106606	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	110092	110308	.	+	1	ID=g3.t1.cds;Parent=g3.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	stop_codon	110306	110308	.	+	0	Parent=g3.t1
# protein sequence = [MHHIEEIDPIFPNMTTVKALEHLYNAASFDPHRILQQTVCYDTWFSWTVSLSWGYAVQVFDKHVLLPNVQRVQESYAP
# WKSSHLGGLYDFDTRKYEPDPCQRQPVYFLDKVSSSINGTESIYKKKTFEKCKFDMSSPRRLEKIRVLSNNPAMPPTAVPTSPSVEAPGLPPSAEAPG
# LPPSAEGPDASAPATSSPSSADKISVVAGSTVGFGFVVMMMFLL]
###
###
C07HBa0058M08.1	AUGUSTUS_ab_initio	gene	111184	115109	1	-	.	ID=g4
C07HBa0058M08.1	AUGUSTUS_ab_initio	transcript	111184	115109	.	-	.	ID=g4.t1;Parent=g4
C07HBa0058M08.1	AUGUSTUS_ab_initio	stop_codon	111184	111186	.	-	0	Parent=g4.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	111184	111453	.	-	0	ID=g4.t1.cds;Parent=g4.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	111573	111735	.	-	1	ID=g4.t1.cds;Parent=g4.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	CDS	114949	115109	.	-	0	ID=g4.t1.cds;Parent=g4.t1
C07HBa0058M08.1	AUGUSTUS_ab_initio	start_codon	115107	115109	.	-	0	Parent=g4.t1
# protein sequence = [MEVDSSGNPNWLFDYELMTDITSAASVTVAEFQSPATIDFSWPAQTIYASSNLMFLALSSVLDPGRPPKTEKVAILSD
# AQRMLIELRTETQKLKESNEELQEKIKELKAEKNELRDEKQRLKEEKDNLEQQVKSLASKAGFLSHPSAMGAAFTAQGQVAAGNKLMPFIGYPSVAMW
# QFMQPAVVDTSQDHVLRPPVA]
###
# command line:
# /usr/bin/augustus.real --species=human --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C07HBa0058M08-yE89f/AUGUSTUS_ab_initio/seq_with_defline_removed