##gff-version 3
# This output was generated with AUGUSTUS (version 2.0.2).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de).
# Please cite: Mario Stanke and Stephan Waack (2003) "Gene prediction with a hidden Markov model and
# a new intron submodel", Bioinformatics, Vol. 19 Suppl. 2, ii215-ii225
# No extrinsic information on sequences given.
# Initialising the parameters ...
# human version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequence and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 120182, name = C07HBa0059A10.2) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
###
C07HBa0059A10.2	AUGUSTUS_ab_initio	gene	1344	2144	1	+	.	ID=g1
C07HBa0059A10.2	AUGUSTUS_ab_initio	transcript	1344	2144	.	+	.	ID=g1.t1;Parent=g1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	1344	1496	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	1596	2144	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	stop_codon	2142	2144	.	+	0	Parent=g1.t1
# protein sequence = [PPNRTSNAGKETIHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASNLFDCDVGLDEYL
# LKSYYKTASLIAASTKGAAIFSEVGSDISEQMFQYGRNLGLSFQIVDDILDFTQSAAQLGKPAGSDLAKGNLTAPVLFALEKEPNLRNIIESEFHDAG
# SLEEAINLVKSCGGIQRAQDLAKEKADLAMQNLKCLPSSPFQAALEEIVKYNLERIE]
###
###
C07HBa0059A10.2	AUGUSTUS_ab_initio	gene	34439	45805	1	+	.	ID=g2
C07HBa0059A10.2	AUGUSTUS_ab_initio	transcript	34439	45805	.	+	.	ID=g2.t1;Parent=g2
C07HBa0059A10.2	AUGUSTUS_ab_initio	start_codon	34439	34441	.	+	0	Parent=g2.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	34439	34459	.	+	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	37237	37380	.	+	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	37644	37739	.	+	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	37842	37973	.	+	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	39665	39713	.	+	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	41457	41549	.	+	2	ID=g2.t1.cds;Parent=g2.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	41628	41814	.	+	2	ID=g2.t1.cds;Parent=g2.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	41985	42108	.	+	1	ID=g2.t1.cds;Parent=g2.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	42339	43302	.	+	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	44151	45805	.	+	2	ID=g2.t1.cds;Parent=g2.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	stop_codon	45803	45805	.	+	0	Parent=g2.t1
# protein sequence = [MRSISNKVLSDSESVRWLNYAIEKIWPLCMEEIVSQKILLSIIPWFLQKYKPWTAKEAVVQHLYLGRSPPMFTEMRVL
# RESTGDDHLVLELGMNFRAADDMSAILAVKLRKRLGFGMWAKLHLLGMHVEGKPNMLVVDVEKFVSPQPENWFSADAKEPIAFVILEVLEAADMKPSD
# LNGLADPYVKGHIGLYRFRTKTKKKTLNPQWREEFKIPVCTWESPNNMLNVEVRDKDHLYDDTLGKCSINICDFRDGQRHDMWLSLQNIKIGRLHLAI
# TVVDCAKKGAEQSYDSGSMVNEQDSKSAEVDKTEQSSLTTESVDEPSKTGDKYEPINIEGQRETGIWVHQPGSEVAQVWEPRKGKNRVIGGEVHSENA
# GSKGSLKSTSGGSSHYNEYKLDGSGNGSKPDSPGRFHRGLHKISSLFRRSSSKEDKSGNLGEPDLSPRVNLRAVNAKDIGVKIIVDDTILPSSLTTPT
# EDGKDNCAGNGKNPTKGRVRNKTKKILKNAGKSVGGGIKKVMSGKSSGKSKEEVESSETERLSSVESDTSYAESQRSSVDSPPVVAPSADNSSTPSSG
# IENSDTTIRTSELVDSESIKTPDEVAANSNENHAFGGASMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGFPGVCIATSGPGATNLVSGLADA
# LLDSIPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVVREAFFLAKSGRPGPVLIDVPKDIQQQLVIPNWDQPMRLPGYMSRL
# PKLPNEMLLEQIVRLISESKKPVLYVGGGCSQSSEELRRFVELTGIPVASTLMGLGAFPSGDELSLQMLGMHGTVYANYAVDSSDLLLAFGVRFDDRV
# TGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADIKLALQGLNSIFESKKGKLKLDFSAWRQELTEQKVKYPLNFKTFGEAIPPQYAIQVLDELTN
# GNAIISTGVGQHQMWAAQHYKYKKPRQWLTSGGLGAMGFGLPAAIGAAVGRPGEIVVDIDGDGSFIMNVQELATIKVENLPVKIMLLNNQHLGMVVQW
# EDRFYKANRAHTYLGNPANEEEIFPNMLKFAEACGVPAARVSHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRRSY]
###
###
C07HBa0059A10.2	AUGUSTUS_ab_initio	gene	47174	69146	1	-	.	ID=g3
C07HBa0059A10.2	AUGUSTUS_ab_initio	transcript	47174	69146	.	-	.	ID=g3.t1;Parent=g3
C07HBa0059A10.2	AUGUSTUS_ab_initio	stop_codon	47174	47176	.	-	0	Parent=g3.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	47174	47401	.	-	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	50450	50561	.	-	1	ID=g3.t1.cds;Parent=g3.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	50660	50828	.	-	2	ID=g3.t1.cds;Parent=g3.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	50917	50985	.	-	2	ID=g3.t1.cds;Parent=g3.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	51092	51211	.	-	2	ID=g3.t1.cds;Parent=g3.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	54569	54686	.	-	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	55646	55737	.	-	2	ID=g3.t1.cds;Parent=g3.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	68318	69146	.	-	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	start_codon	69144	69146	.	-	0	Parent=g3.t1
# protein sequence = [MATSSSLSFFSSTIFFSNSNTLHSSKQQQQKQLIFKPKQQQFSIRSEAAAATIPILSFDGTEVGSTTLNLKSAPLDTA
# RAVVHRGLTTDLRNQRRGTASTLTRAQVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSATQNAIVVEEF
# DDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTEVSDNVILSSRNISTLKMLTPRTLNLFDILDSEKLVFTKSAVEFLNERYGNDDDDDDDWEVVDEEE
# EDGTPNNVKDKKEKVSASNVEENKDANEDEEMGAMIIMASHDLESPLQVFDATVLEDVMSIFITSAVLKLVNDEWENFLERMEKEGIDESSDEIEEEE
# RSWASFRGQTLSRTVRGMMYYRKALKLQAFLDMAEDEDILQGFDAIERKNDTLSAQLEALADMKFIHVVSCQIYGLQKTTGDPQAQDILNLMIRYPSL
# RVAYVEEKEEITADKPRKVYSSILVKAVNGFDQVGQVVRPKIEGTGLWHFTRVFARAYDYGMGVVLFAPLASLAWLPIISAFQTRFLFNEAFSRRLQI
# QPILAGKKKH]
###
###
C07HBa0059A10.2	AUGUSTUS_ab_initio	gene	70694	71128	1	-	.	ID=g4
C07HBa0059A10.2	AUGUSTUS_ab_initio	transcript	70694	71128	.	-	.	ID=g4.t1;Parent=g4
C07HBa0059A10.2	AUGUSTUS_ab_initio	stop_codon	70694	70696	.	-	0	Parent=g4.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	70694	71128	.	-	0	ID=g4.t1.cds;Parent=g4.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	start_codon	71126	71128	.	-	0	Parent=g4.t1
# protein sequence = [MSMATYCNNENLALSNIENDVFMSFLEEPEFEASDEELLRSVIESLEVENIVPSVNTNDSILFEQMKVENSTNLSCDD
# LGELEYCWIDSDMDSSTPSDDDDMNIWFKDCYYDQNGVEDFTNFVGACREFSWEESCESMLYAPDV]
###
###
C07HBa0059A10.2	AUGUSTUS_ab_initio	gene	82399	102139	1	-	.	ID=g5
C07HBa0059A10.2	AUGUSTUS_ab_initio	transcript	82399	102139	.	-	.	ID=g5.t1;Parent=g5
C07HBa0059A10.2	AUGUSTUS_ab_initio	stop_codon	82399	82401	.	-	0	Parent=g5.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	82399	82952	.	-	2	ID=g5.t1.cds;Parent=g5.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	86703	87073	.	-	1	ID=g5.t1.cds;Parent=g5.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	87947	88065	.	-	0	ID=g5.t1.cds;Parent=g5.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	93906	93991	.	-	2	ID=g5.t1.cds;Parent=g5.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	101962	102139	.	-	0	ID=g5.t1.cds;Parent=g5.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	start_codon	102137	102139	.	-	0	Parent=g5.t1
# protein sequence = [MATPAPEQRDGNIVVLAGAGEATSRVVGSGDTGDVGSYQGCCCGCGDGGCDDGGCCGGDVVDINNSVTKLLALGAELD
# GPIKYEIHGKATITSSVMWGLMRGKEIERQFLVKLMILVEQEEEIIMAMTGGFEKDRSIRRDWSFPHSPPLDPDLSDVEDDDKYYTYTQKSATHSIVL
# GESTTKVVYPNDDDYDDDDIGYISHDEGIYYSENNSVNDSTNGVDRGYEYDDGDGGDDDDDGYVRADGGEEDGGDGMANLIAVENWTWIDGCDELSNF
# DVSQIDGDIVMSLLDDMHGDDHHDDERLTSVIRSLEAEIDQSQSRSTFNNVVSELIVKVHDHDSFQDKQERNYDGENLQSRNIIGQYQNKDFVESNDL
# DFSWMEMEMEMPSSYPSGDINLWCLNNNYEQDYEEIADGVFDYSDTVFLDENDYHSLWQEQNV]
###
###
C07HBa0059A10.2	AUGUSTUS_ab_initio	gene	103343	118772	1	-	.	ID=g6
C07HBa0059A10.2	AUGUSTUS_ab_initio	transcript	103343	118772	.	-	.	ID=g6.t1;Parent=g6
C07HBa0059A10.2	AUGUSTUS_ab_initio	stop_codon	103343	103345	.	-	0	Parent=g6.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	103343	103666	.	-	0	ID=g6.t1.cds;Parent=g6.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	105678	105797	.	-	0	ID=g6.t1.cds;Parent=g6.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	CDS	118656	118772	.	-	0	ID=g6.t1.cds;Parent=g6.t1
C07HBa0059A10.2	AUGUSTUS_ab_initio	start_codon	118770	118772	.	-	0	Parent=g6.t1
# protein sequence = [MAFVDGCCPISASNTGTQGSGFSWKVIISYKSTELPDRDLSLVVQRQQQLLIATVVVVEQLQQEPALQQMLVRTRDVV
# AKHKDEARGGDVELGSGAGKVKDGNLVVLAGAGGAAAATVVGNEDRDKEVVVEKLSEVPKLLETLIDCFCGGDGDDVGDFGGGDCCCGDSGGDGGGCG
# GCGGCGGGCG]
###
# command line:
# /usr/bin/augustus.real --species=human --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C07HBa0059A10-RIdrJ/AUGUSTUS_ab_initio/seq_with_defline_removed