##gff-version 3
# This output was generated with AUGUSTUS (version 2.0.2).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de).
# Please cite: Mario Stanke and Stephan Waack (2003) "Gene prediction with a hidden Markov model and
# a new intron submodel", Bioinformatics, Vol. 19 Suppl. 2, ii215-ii225
# No extrinsic information on sequences given.
# Initialising the parameters ...
# human version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C07HBa0079F09-1dM0I/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequence and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 119677, name = C07HBa0079F09.1) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
###
C07HBa0079F09.1	AUGUSTUS_ab_initio	gene	14154	15033	1	-	.	ID=g1
C07HBa0079F09.1	AUGUSTUS_ab_initio	transcript	14154	15033	.	-	.	ID=g1.t1;Parent=g1
C07HBa0079F09.1	AUGUSTUS_ab_initio	stop_codon	14154	14156	.	-	0	Parent=g1.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	14154	14381	.	-	0	ID=g1.t1.cds;Parent=g1.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	14650	15033	.	-	0	ID=g1.t1.cds;Parent=g1.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	start_codon	15031	15033	.	-	0	Parent=g1.t1
# protein sequence = [MSFQRFYETWFDQLKEIVRQLNQVPRPATSDHHRELHQLLVQKVVSHIYEYYRVKSLAAKNDILSVFSAPWSTSLERS
# LHWIAGWRPTTAFHLIYTESSILFESHIIDILRGLRYGDLGDLSPEQLARDGASEIIGLMGDIEEKMEKLVEILEKADKLRMKTIENLVQLLTPQQAV
# EFLIASAHLQFGIRKWGINHDRQRENP]
###
###
C07HBa0079F09.1	AUGUSTUS_ab_initio	gene	25201	35515	1	-	.	ID=g2
C07HBa0079F09.1	AUGUSTUS_ab_initio	transcript	25201	35515	.	-	.	ID=g2.t1;Parent=g2
C07HBa0079F09.1	AUGUSTUS_ab_initio	stop_codon	25201	25203	.	-	0	Parent=g2.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	25201	26018	.	-	2	ID=g2.t1.cds;Parent=g2.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	29147	29198	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	29289	29441	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	29681	30285	.	-	2	ID=g2.t1.cds;Parent=g2.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	34753	34912	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	35156	35515	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	start_codon	35513	35515	.	-	0	Parent=g2.t1
# protein sequence = [MKEIKNEVRTSVKGIIDKRMKAMKAGNADNNEDLLGILLESNFKEIEQHGNKDFGMSIEEVIEECKLFYFAGQETTSV
# LLVWTLVLLSRYQDWQTQAREEVLQVFESRKPDFDGLNHLKVVNEDIVLGELCLPAGVLVSLPMILXHHDKDIWGEDATSFNPERFREGISSATKESG
# DVEWPCKPVVESSGWPTSWQNDSNKSKLQTPLPTAEDEAANNSQLPALLKVAEYLNSTLSLDDDDEFSEYIGENGDYFINDDEGFLDGEEGFQDYDFF
# VKLFKQDDGLREYYEKNRENGVFCCLVCCGVREKGWKRFKDCSSLVQHSISIAKTSKRRAHRAYCKVVCEILGWDVDSLPSIVLSTGVKLGESSDKPV
# KAQGNVDDGGDDSLSGQCKSTSSVSVSETEVSLSKLSLIDERQPGKDCCSAELEDSLSGATVDRSLGDLGKVPLENTFEFVNEGELGPYIVEYQADYR
# VLSVFNNPFQLCFYNTTPNAWTLALRMGTVRSESLMRWVWEANRGNPVKENATFTFGTNGNLVLADADGRIAWQSNTANKGVTGFKLLPNGNMVLHDK
# KGKFVWQSFNYPTDTLLVGQTLRLSGPNKLVSRASVKKNANGPYSLVVQPRLFAVYKGNKVDVELAWFDYGNNTLESIKLNSGNQRLKLDYRFAKSTQ
# RSSHVMAFTKYNTTLTYLRLEIDGNLKAYTFVRDEEADEFRWKVTYSRI]
###
###
C07HBa0079F09.1	AUGUSTUS_ab_initio	gene	43744	53837	1	-	.	ID=g3
C07HBa0079F09.1	AUGUSTUS_ab_initio	transcript	43744	53837	.	-	.	ID=g3.t1;Parent=g3
C07HBa0079F09.1	AUGUSTUS_ab_initio	stop_codon	43744	43746	.	-	0	Parent=g3.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	43744	44182	.	-	1	ID=g3.t1.cds;Parent=g3.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	44278	44522	.	-	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	53352	53837	.	-	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	start_codon	53835	53837	.	-	0	Parent=g3.t1
# protein sequence = [MIEKVDIVFNYGGNWVISLKLEYNIKFQHTWYYNTCLVCYDNLCEAFTSKFGFTEVQQLLVTGPSGTYYVIEDIDGIK
# ALQYLFSKDFKVINFYAIDAHELRVSATNIIYHTESYFVDVEAATDCDYSDVEDDTLYEMGDHCEIVEYNAEVLQRYDHEKERVHMLPAFYLSCSEML
# SKWEDVVRVEGSHEIDVWPHLQQLTCDVISRTAFGSSYEEGRKIFELQKEQAQHFLEVIRSVYIPGWRFLPTKRNRRMKELKNDVRSSIRGIIDKRLK
# AMEAGNADNEDLLGILLESNFKEIELHGNKDFGMSIEEVIEECKLFYFAGAETTSVWILWTLVLLSRHPDWQERAREEVLQVLGSRKPDFDGLNHLKV
# VSILVLPLVQKARVNFF]
###
###
C07HBa0079F09.1	AUGUSTUS_ab_initio	gene	55382	61816	1	+	.	ID=g4
C07HBa0079F09.1	AUGUSTUS_ab_initio	transcript	55382	61816	.	+	.	ID=g4.t1;Parent=g4
C07HBa0079F09.1	AUGUSTUS_ab_initio	start_codon	55382	55384	.	+	0	Parent=g4.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	55382	55603	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	58527	58598	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	59548	59624	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	61600	61669	.	+	1	ID=g4.t1.cds;Parent=g4.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	61763	61816	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	stop_codon	61814	61816	.	+	0	Parent=g4.t1
# protein sequence = [MASSTKVTVEYAKSGRSSCKKCDEKIPAKSVRLGLVSKHPQGFDQTKWHHLDCFPFNSDFVSSVEDIAGFSLLQLSAT
# EEEPVLEIAFSISDVRDTYKGDGRHASSKIAAFDFDGCLANTNVRRSFYVGDAAGRQGDHSDADIRFAQAIGLKFYVPEEFFEKET]
###
###
C07HBa0079F09.1	AUGUSTUS_ab_initio	gene	62393	64183	1	-	.	ID=g5
C07HBa0079F09.1	AUGUSTUS_ab_initio	transcript	62393	64183	.	-	.	ID=g5.t1;Parent=g5
C07HBa0079F09.1	AUGUSTUS_ab_initio	stop_codon	62393	62395	.	-	0	Parent=g5.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	62393	64183	.	-	0	ID=g5.t1.cds;Parent=g5.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	start_codon	64181	64183	.	-	0	Parent=g5.t1
# protein sequence = [MQNQNLSVAKTLNPTFTTLQSPSIAQFFNPLRRTLPTIPSTYNRTPKPLYIQAQNRELAISRRDDSHRRDIRSFAGRS
# KGKSGGTSPGRIEGSGEFRRQAKRNARRKSKKLAESLFYRLKNPHGNYPDNFSEEELQMIGLGYDRMVRFMERDDPNLKHPYDWYKYGQFGPYSWRGV
# VLGEPVRGRFSDPCVSMIGEVRDQEEWEKIEQHEMAQEFQNRLDAMDKNVGFRYFWVFVRHPKWRISDSPWQQWTLVSEVVVEAGNQRLDKWNLMGRL
# GNKARSLITQCAAWMRPDIVYVQRPVYQCRFEPQDDFFKALTPLLDPETEQDCLFELEDDNGRMEFCTYFGGLCKIVRVNPKAFVDDVVKAYEKLSDE
# KKSKCLGFLLDNHPVPLLHPYTKEWKVKLEEMEMGCDAPDDDDYGRNNTGETEIVDWIEDEEEDGEDEDEDEYDVDLDASGDDDDELGIKEDDDSSQE
# EDTRFWEDEFNKALGSNEAMEKFAKKYMETSTKFYEKHINAMEDKEKQAKGDGGDELAMRGVRAKISPKEWESHGYGTWRRKLKKGKMPPELFMRAAV
# RPFTYKNLVKEIVLTRHAILEGEIGKKK]
###
###
C07HBa0079F09.1	AUGUSTUS_ab_initio	gene	65020	74508	1	+	.	ID=g6
C07HBa0079F09.1	AUGUSTUS_ab_initio	transcript	65020	74508	.	+	.	ID=g6.t1;Parent=g6
C07HBa0079F09.1	AUGUSTUS_ab_initio	start_codon	65020	65022	.	+	0	Parent=g6.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	65020	65208	.	+	0	ID=g6.t1.cds;Parent=g6.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	65955	66137	.	+	0	ID=g6.t1.cds;Parent=g6.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	66308	66487	.	+	0	ID=g6.t1.cds;Parent=g6.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	71065	71152	.	+	0	ID=g6.t1.cds;Parent=g6.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	71893	72022	.	+	2	ID=g6.t1.cds;Parent=g6.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	73932	74508	.	+	1	ID=g6.t1.cds;Parent=g6.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	stop_codon	74506	74508	.	+	0	Parent=g6.t1
# protein sequence = [MARRNHTTELGCIACDDLSELGAGKEGWLVNNPNLLTALDTHSIALANRSLVLILHWSEGSDPWCHMMISKLTRTFVW
# QIVSPGKILRLRVRDTKRDLTQDASSEEVCVVMSGVIARFDGSDIQNMLQRWFRERHSQFWDETESENSADTFGRLPYQLWNVNKYGSCVDAAITGLM
# PPPLLELQPGPRDPPLQCFIKRDKKNATFYLYLALSPSLMDQGKFLLAARRYRNGAHIEYIISLDADDLSQRSKAYVGKLRSDFLGTNFTIYDSQAPH
# NGARPSSSRSCRRFASKQISPQLPAGNFEVGSVSYKLNLLKSRGPRRMICSLNCPCPGEAASDKSQDALKKKLVGSAEANSTVLKNKAPRWHEHLQCW
# CLNFHGRVTVASVKNFQLVATMDQSQPDGKGDEDTVILQFGKVGDDVFTMDYRKPLSAFQAFAICLTSFGTKLACE]
###
###
C07HBa0079F09.1	AUGUSTUS_ab_initio	gene	75273	77622	1	-	.	ID=g7
C07HBa0079F09.1	AUGUSTUS_ab_initio	transcript	75273	77622	.	-	.	ID=g7.t1;Parent=g7
C07HBa0079F09.1	AUGUSTUS_ab_initio	stop_codon	75273	75275	.	-	0	Parent=g7.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	75273	75392	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	75538	75620	.	-	2	ID=g7.t1.cds;Parent=g7.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	76331	76414	.	-	2	ID=g7.t1.cds;Parent=g7.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	77487	77622	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	start_codon	77620	77622	.	-	0	Parent=g7.t1
# protein sequence = [MSGGLSQDWEPVVIRKKAPTAAARKDEKAVNAARRSGAEIETIRKSTAGSNRAASSSTTLNTRKLDEDTENLAHQKVP
# TELKKAIMQARQDKKLTQSQLAQLINEKPQIIQEYESGKAIPNQQIISKLERALGAKLRGKK]
###
###
C07HBa0079F09.1	AUGUSTUS_ab_initio	gene	97082	108765	1	+	.	ID=g8
C07HBa0079F09.1	AUGUSTUS_ab_initio	transcript	97082	108765	.	+	.	ID=g8.t1;Parent=g8
C07HBa0079F09.1	AUGUSTUS_ab_initio	start_codon	97082	97084	.	+	0	Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	97082	97341	.	+	0	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	97449	97572	.	+	1	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	98191	98407	.	+	0	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	99199	99353	.	+	2	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	99749	100535	.	+	0	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	100614	100747	.	+	2	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	100864	101250	.	+	0	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	101349	101610	.	+	0	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	103786	103908	.	+	2	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	104180	104397	.	+	2	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	104719	104824	.	+	0	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	104906	105014	.	+	2	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	105530	105644	.	+	1	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	105723	105861	.	+	0	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	108617	108765	.	+	2	ID=g8.t1.cds;Parent=g8.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	stop_codon	108763	108765	.	+	0	Parent=g8.t1
# protein sequence = [MLNMANLAEEVQIANSGRAKSKKGELSDESNLMTESDIEETLKRLVVNLNKSPREVFNALKNQTVDLVFTAHPTQAIR
# RSLLQKHASCFTSLVLTFLLFRIRNCLSQLYAKDITPDDKEELDEALEREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWNGVPKFLRRVDTALK
# NIGIDERVPYNAPLIQFSSWMGGDQFWKQVPPSEPYRVIIGDVRDKLYHTRERTRQLLSNGFSEIPEEATYTNIKQFLEPLELCYRSLCACGDRPIAD
# GSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITQHLEIGSYREWSEERKQEWLLSELSGKRPLFGPDLPKTEEIDDVLNTFHVISELPSDCFGA
# YIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLDDLDAAPAAIARLFSIEWYKNRINGKQEVMIGYSDSGKDAGRLSAAWQLYKAQEELIKVAK
# QYDVKLIMFHGRGGTVGRGGGPSHLAILSQPPDTIQGSLRVTVQEHGMYPPFPPKPEWRALLDEISVVATEKYRSIVFKEPRFVEYFRLATPELEYGR
# MNIGSRPSKRKRNGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKYALNKDKKNLNMLRDMHKKWPFFRVTADLIEMVFAKGDPGIAALYDKLLVSE
# DLWSFGELLRSDYEETKSLLLKVAGHKELLENDPSLKQRLRLRDSYITTLNVCQAYTLKRIRDPTYKVTPRPHITKEYIESKPAAELVSLNPQSEYAP
# GLEDTLILTMKGLSVISDAALVVALSRKYGKRLASYALAMLCLASGCFFASTSFLPSSFSMYAMSLSSALFLFNKPAMAVSVAATGVILGWPFSILAF
# LPLTIYSLVKSFKPVFLTGVVTSIVLMVLSVLVDYDYYKKWTSSVINLLVYNVLGGGESHLYAILPVAKKKYAPELLIVVSPVYLWIAFMSLQPHKEE
# RFLYPIYPLICVAASAVIESFPDLFRDKYNPNGTSTLVKIAKILRPLALGLILCVSHARTFSLINGYSAPIEIYKHLDYHDDAGPDSSMTLTPLHVDS
# NAIVSGWRSVGNPGNGFVLILNPRKSSPIIRGTAES]
###
###
C07HBa0079F09.1	AUGUSTUS_ab_initio	gene	113527	114136	1	+	.	ID=g9
C07HBa0079F09.1	AUGUSTUS_ab_initio	transcript	113527	114136	.	+	.	ID=g9.t1;Parent=g9
C07HBa0079F09.1	AUGUSTUS_ab_initio	start_codon	113527	113529	.	+	0	Parent=g9.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	113527	113680	.	+	0	ID=g9.t1.cds;Parent=g9.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	CDS	113781	114136	.	+	2	ID=g9.t1.cds;Parent=g9.t1
C07HBa0079F09.1	AUGUSTUS_ab_initio	stop_codon	114134	114136	.	+	0	Parent=g9.t1
# protein sequence = [MAKAIILLSTLCVLAVANFAVADVETFNVEGKVFCDTCRLGFVTSLSNTLEGATVRMTCKDMETHNETFTTEGKTDGI
# GKYTLKVEGDHENDICEVTLVNSPKDDCKEVVPDMVNNRVICSKNVGMHNAVRFVNPLFYQKDKPIDGCAKLVEEMELVDLLILENDKEEN]
###
# command line:
# /usr/bin/augustus.real --species=human --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C07HBa0079F09-1dM0I/AUGUSTUS_ab_initio/seq_with_defline_removed