##gff-version 3
# This output was generated with AUGUSTUS (version 2.0.2).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de).
# Please cite: Mario Stanke and Stephan Waack (2003) "Gene prediction with a hidden Markov model and
# a new intron submodel", Bioinformatics, Vol. 19 Suppl. 2, ii215-ii225
# No extrinsic information on sequences given.
# Initialising the parameters ...
# human version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C07HBa0049C13-8HCGX/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequence and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 119104, name = C07HBa0049C13.2) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
###
C07HBa0049C13.2	AUGUSTUS_ab_initio	gene	4101	5540	1	+	.	ID=g1
C07HBa0049C13.2	AUGUSTUS_ab_initio	transcript	4101	5540	.	+	.	ID=g1.t1;Parent=g1
C07HBa0049C13.2	AUGUSTUS_ab_initio	start_codon	4101	4103	.	+	0	Parent=g1.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	CDS	4101	5540	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	stop_codon	5538	5540	.	+	0	Parent=g1.t1
# protein sequence = [MENTKQLVFIPGPGMGHLVAAIEIGKLLISRANWLSIVFFVIDLPIETRVHTYTNQSQLINQRLQFLHLSSPKTQTNH
# LSNRETPLVETFNNSKELVRNAIIQNFMTTSLVGVVVDMFSDKMIQVATELGLPSYVFFTSSAAFLGLMFYAQILKDEHNQDISDFKNSDTLLPVSTY
# IHPLPAKVLPNAMLDKIGRLHLPLSTARMLRKVKGIIINTFVEFELHSMNTLDNDDGVPVLYPIGPIINLNQEPDESINSWLDEQQDSSVLFLCFGSY
# GSFDEEQLKEIAVALDHSGCRFLWSLRQPQGKGEIGALDDVAHPEQVLPDGFLTRSMNRGKVIGWAPQVVVLSHRSIGGFITHCGWNSILESLWFGVP
# IATWPMYAEQQVNAFEMVVDLEIAIDIKMEYRSESPVLVTAKEIECSIRRLMFDSKEEKNGIRKKMEELKEKSRKTLLEGGSSYCFLDSLINEFKDKS
# RVRKDTIPT]
###
###
C07HBa0049C13.2	AUGUSTUS_ab_initio	gene	13096	14526	1	+	.	ID=g2
C07HBa0049C13.2	AUGUSTUS_ab_initio	transcript	13096	14526	.	+	.	ID=g2.t1;Parent=g2
C07HBa0049C13.2	AUGUSTUS_ab_initio	start_codon	13096	13098	.	+	0	Parent=g2.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	CDS	13096	14526	.	+	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	stop_codon	14524	14526	.	+	0	Parent=g2.t1
# protein sequence = [MGHVAQMLELAKLFINRNHQLSITVLIMKLPDYIDPVSGPFVDSVIDSSSSERLRFFELPPVDPTPEWSSKTRGHFVN
# RLVQTQKSRIREFLISQRGGVKLAGFVVDMLCTPLMDVAEEFGIPSYVFFTSPAAFLGLMIHFQFLEDECSRDVSSFKNSDDGTALLSFPSYAYPVPT
# NVLPMVLVDRDTWLGRFLDFARGYRKAKGIIINTFAELEVYALDAYNNNNLSRSEQAHPLPSIYPIGPILNQSKSQSESEEAEITNWLDKQPPNSVVL
# LCFGSQGSLPTDQVKQIAIALDNIGCRFLWSLRRPPQSNNAQFPGEYTSYSEILPEGFLKRTEKKGKVVGWVPQLKVLSHEAIGGFVSHCGWNSILES
# LWYGVPIATWPLHSEQQVNAFQLVKEIGVAVEITLDYCERNKDQAIVTAEAIENGISKLMETNSAVRHEAKMMKEKSRASVTEGGSSYLAFSKLINEL
# LKNAAL]
###
###
C07HBa0049C13.2	AUGUSTUS_ab_initio	gene	27806	29589	1	-	.	ID=g3
C07HBa0049C13.2	AUGUSTUS_ab_initio	transcript	27806	29589	.	-	.	ID=g3.t1;Parent=g3
C07HBa0049C13.2	AUGUSTUS_ab_initio	stop_codon	27806	27808	.	-	0	Parent=g3.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	CDS	27806	28300	.	-	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	CDS	28395	29120	.	-	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	CDS	29188	29589	.	-	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	start_codon	29587	29589	.	-	0	Parent=g3.t1
# protein sequence = [MVMFLLCQFMLVAKSNYIRKLILDTKESDVSRINLSDIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEYLQMTD
# KYCDNNLASRTEDFLAQVALTSLSGALVVLKSCENLLPLAHDLNIIQRCVDIAGAKACVEANFPSRSPPNWWTEELTILDVAFFERIIVAMKTRGAKA
# LTIASAIITYTERSLRDLVRDHSGNNTRLMVPEDSDMRMHQRELLESIVTLLPAERAAFPINFLCCLLRTAIFLRAASSCKNELEKRISAILEHVTVD
# DLLVLSFSYDGERLFDLESVRRIISGFMEKEKSVAVFKGGDFGDVCTTAMQRVAKTVDAYLGEIATFGDLSISKFNGIAILVPKGARKADDDLYRAVD
# IYLKAHPHLDEIEREKVCSVMDPLKLSHEARVHASQNKRLPVQIVLHALYFDQLKIRSGAADDSNNNMPEAMATRNQLQADVSLVKENEVLRTELLKM
# KMYIADIQKTTNSSQGTSKGSLKKTTFFSSVSKTLGKFNPFKHGSKDTSSIVDDAALDLTKPRRRRFSIS]
###
###
C07HBa0049C13.2	AUGUSTUS_ab_initio	gene	74578	75891	1	+	.	ID=g4
C07HBa0049C13.2	AUGUSTUS_ab_initio	transcript	74578	75891	.	+	.	ID=g4.t1;Parent=g4
C07HBa0049C13.2	AUGUSTUS_ab_initio	start_codon	74578	74580	.	+	0	Parent=g4.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	CDS	74578	75891	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	stop_codon	75889	75891	.	+	0	Parent=g4.t1
# protein sequence = [MDFGVQSYIESLSSIPRLQFVDITVDENTIAGFMSNKETFFTNFVRSHKPKVKDFLNNSSFSRSDSRLAGFVLDMFCT
# SMIDVANEFCVPSYIFFTSNAAFLALCFHFESLKKEHHVDTSKCKNSNEELTIPGFKNPYPTKFLPRLTTDQSVITTTFFDSVTRIKETKGIMVNTFA
# DLEPLPLRSLSVPPIYPVGPVVNFKEGGHGRNSQSETESIIKWLDDQPESSVVFLCFGSMGSFEMEQIREIAIALECSGHRFLWSLRRPPPKGQIGLP
# SNYENAEEVLPEGFIERTNGVGKMIGWAPQVAVLSHPAVGGFVSHCGWNSVLESLYFGVPIATWPLYAEQQMNAFELVKELGVGVEIRMDYFKDFHGN
# DENVEIVGAKEIESGIRKLMENADENEIRRKANEMKEKCHGAMKEGGSSYAALGLLIKDVISNIS]
###
###
C07HBa0049C13.2	AUGUSTUS_ab_initio	gene	97744	99189	1	+	.	ID=g5
C07HBa0049C13.2	AUGUSTUS_ab_initio	transcript	97744	99189	.	+	.	ID=g5.t1;Parent=g5
C07HBa0049C13.2	AUGUSTUS_ab_initio	start_codon	97744	97746	.	+	0	Parent=g5.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	CDS	97744	99189	.	+	0	ID=g5.t1.cds;Parent=g5.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	stop_codon	99187	99189	.	+	0	Parent=g5.t1
# protein sequence = [METKAELVFIPSPGLGHVASAVEFAKLLLATNERLCISLLVMKHPADFGVQSYLQSLPSLSRFRFVDVSIDPKLVVPL
# LSNKDRFLYDFIDGHKHKVSEFVTSNNSTPSQFGSTQLAGFVLDMFCISMIDVANEFCVPSYIFFTSAAAFLALSFHFEALRNNFKFDYSESDEELSI
# LGFKNPYPAKVLPRPAKAITPSSTLYYDGIRRFRETKGIVINTFAELEPFALQSLSDAKMAPPIYPIHAVFNSDDNEEKQEIESIVEWLDNQPNSSVV
# FLCFGTMGSFEPEQVKEIAIALEHSGHRFLWSLRRPPPKGKIEMPSNYDNSEEVLPEGFLERTKGIGKLVGWAPQVTVLSHPAVGVFVSHCGWNSTME
# SVCCGVPIAAWPLYAEQQMNAFLLVKELGLAVEIRMDYVKDFEGKNPVDIVTAEEIEGAIQKLMENGEENEVRKRVKEMREKSRKAMEEGGSSYTSLR
# LLIDDFISNIS]
###
###
C07HBa0049C13.2	AUGUSTUS_ab_initio	gene	99672	101054	1	-	.	ID=g6
C07HBa0049C13.2	AUGUSTUS_ab_initio	transcript	99672	101054	.	-	.	ID=g6.t1;Parent=g6
C07HBa0049C13.2	AUGUSTUS_ab_initio	stop_codon	99672	99674	.	-	0	Parent=g6.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	CDS	99672	101054	.	-	0	ID=g6.t1.cds;Parent=g6.t1
C07HBa0049C13.2	AUGUSTUS_ab_initio	start_codon	101052	101054	.	-	0	Parent=g6.t1
# protein sequence = [MAKVLIARDEHLVITVLVIKLPCDNKLSSYIESVSTNPNYNSQMKFIELPQDESILQSITNTTFITFLSSHKPQVRNS
# VIEILNSGSNRLAALVIDMMCTAMIDVANEFGLPTYVFYTSGAAMLGLQLHLQSLRDDFNEDVTDYEDDPEAELSVTTYGNPFPAKCLPSIAFDKDGG
# STMYLDLSKRLREAKAILVNTFSEFESHAVKSLSLDEKIPLVYPVGPLLNLDNDQVNNQDSSQHQTIINWLDDQPDSSVVYLCFGSLGSFNEEQIKEI
# AYALEKSGCRFLWSLKKPLAKDTFFPAAYDNPEDVLPEGFLQRTEAIGKVIGWAPQVAILSHDAVGGFVSHCGWNSTLESMWFGVPLATWPIYSEQQA
# NAFQLVKDLEIAVEIKMDYRKDLRGTESNVIVKAEEIEKAIKQLMEPENEIRLKVKGMKEKSRLVLKEGGSSYNAVGHFIEQVMDITN]
###
# command line:
# /usr/bin/augustus.real --species=human --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C07HBa0049C13-8HCGX/AUGUSTUS_ab_initio/seq_with_defline_removed