##gff-version 3
# This output was generated with AUGUSTUS (version 2.0.2).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de).
# Please cite: Mario Stanke and Stephan Waack (2003) "Gene prediction with a hidden Markov model and
# a new intron submodel", Bioinformatics, Vol. 19 Suppl. 2, ii215-ii225
# No extrinsic information on sequences given.
# Initialising the parameters ...
# human version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C07HBa0056M08-KSt0G/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequence and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 102492, name = C07HBa0056M08.1) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
###
C07HBa0056M08.1	AUGUSTUS_ab_initio	gene	5498	6055	1	+	.	ID=g1
C07HBa0056M08.1	AUGUSTUS_ab_initio	transcript	5498	6055	.	+	.	ID=g1.t1;Parent=g1
C07HBa0056M08.1	AUGUSTUS_ab_initio	start_codon	5498	5500	.	+	0	Parent=g1.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	5498	6055	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	stop_codon	6053	6055	.	+	0	Parent=g1.t1
# protein sequence = [MLDKLSNKSSNAKKGPGSSPQERHHQRLTQQQGSQQSRGNSQERPQNQAKAIPGNQVTDANTAYHGQWEESQLSAGAT
# HHALRSEQSQDNTPAPVDHVQLPVDFVQAMMSMMEAISQRVSKVDYQLDLVLKQTSSIPMMRSEIQQLKTSVAVMEANLGMMKILDPGCANVSSLSDL
# RAFARSHPV]
###
###
C07HBa0056M08.1	AUGUSTUS_ab_initio	gene	11654	11962	1	-	.	ID=g2
C07HBa0056M08.1	AUGUSTUS_ab_initio	transcript	11654	11962	.	-	.	ID=g2.t1;Parent=g2
C07HBa0056M08.1	AUGUSTUS_ab_initio	stop_codon	11654	11656	.	-	0	Parent=g2.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	11654	11962	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	start_codon	11960	11962	.	-	0	Parent=g2.t1
# protein sequence = [MVEAMKNVANMDVELTVEERNLLSVGYKNVVGSRRASWRILSSIEQKEESRGNEQNVKRIKEYLQKVESELTNICNDI
# MVVIDQHLIPSCSAGESTVFYHKM]
###
###
C07HBa0056M08.1	AUGUSTUS_ab_initio	gene	46894	51326	1	+	.	ID=g3
C07HBa0056M08.1	AUGUSTUS_ab_initio	transcript	46894	51326	.	+	.	ID=g3.t1;Parent=g3
C07HBa0056M08.1	AUGUSTUS_ab_initio	start_codon	46894	46896	.	+	0	Parent=g3.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	46894	46992	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	48423	48563	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	49046	49186	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	49272	49389	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	49466	49605	.	+	2	ID=g3.t1.cds;Parent=g3.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	49720	49887	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	50418	50573	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	50958	51326	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	stop_codon	51324	51326	.	+	0	Parent=g3.t1
# protein sequence = [MVAAPATVKAPASFDFETSVFKKEKVTLAGNDEIGLRKGSSSFAEARTAGFTEENGTLGDIYETISGSDLVLLLISDA
# AQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDIDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGV
# VESLFRRYTENGMNEELAYKNTVECITGVISKTISTKGMLAVYDSLTEEGKKEFEAAYSASFYPCMEILYECYEDVATGSEIRSVVLAGRRFYEKEGL
# PAFPMGKIDQTRMWKVGERVRATRPAGDLGPLYPFTAGVFVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSR
# KWAPRFDYNLTQQALVAVDNNTPINRDLISNFLADPVHGAIKVCAELRPTVDISVTADADFVRPELRQSVN]
###
###
C07HBa0056M08.1	AUGUSTUS_ab_initio	gene	55629	69944	1	-	.	ID=g4
C07HBa0056M08.1	AUGUSTUS_ab_initio	transcript	55629	69944	.	-	.	ID=g4.t1;Parent=g4
C07HBa0056M08.1	AUGUSTUS_ab_initio	stop_codon	55629	55631	.	-	0	Parent=g4.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	55629	55659	.	-	1	ID=g4.t1.cds;Parent=g4.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	58748	58934	.	-	2	ID=g4.t1.cds;Parent=g4.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	62363	62511	.	-	1	ID=g4.t1.cds;Parent=g4.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	69901	69944	.	-	0	ID=g4.t1.cds;Parent=g4.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	start_codon	69942	69944	.	-	0	Parent=g4.t1
# protein sequence = [MSHYKADEPKCRIVRACHLAKQAFDEAISELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLPEDAEHLTKEILKEFLAG
# YGKVPDKEKEKKRLGMAQKEYAIGIVSDYDLPITPDQYVQAVMPFYHDFEQIIHGSTY]
###
###
C07HBa0056M08.1	AUGUSTUS_ab_initio	gene	96110	96385	1	-	.	ID=g5
C07HBa0056M08.1	AUGUSTUS_ab_initio	transcript	96110	96385	.	-	.	ID=g5.t1;Parent=g5
C07HBa0056M08.1	AUGUSTUS_ab_initio	stop_codon	96110	96112	.	-	0	Parent=g5.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	CDS	96110	96385	.	-	0	ID=g5.t1.cds;Parent=g5.t1
C07HBa0056M08.1	AUGUSTUS_ab_initio	start_codon	96383	96385	.	-	0	Parent=g5.t1
# protein sequence = [MNFESRQGETPEDTIRTDKVESLKMDVDYLKSIDFILLLEAANDVDAPRTSEIPANTIVDESEGENDEEQIEVREDNS
# DLDIADQVVLHIS]
###
# command line:
# /usr/bin/augustus.real --species=human --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C07HBa0056M08-KSt0G/AUGUSTUS_ab_initio/seq_with_defline_removed