<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 15:34:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375149" ref_strand="+" ref_description="SGN-E375149 [TUS-34-D15](-)">
      <seq>cagtactaccagcaagaagcatccaaactgcgacgacaaattcgagatatacagacttataacaggcaaatagttggagaggcattgggcagtttaagccctagagacctcaagaatttggaagggaaacttgaaaaggccattggtagagtccgttccaaaaagaatgaattgcttttctcagaaatagagctcatgcaaaagagggagattgagctgcagaacgccaacatgtatctacgcgcaaagatagcagaggtagagagagcacaagagcaaatgaacttgatgcctggaggcggaggcggaggcggaggcggaggaggaggaggatctgatcatcaataccatcatcagccaaattacgaagatgctcgcaataacttcctgcctgtaaatctcctggaaccaaatcctcattactctcgtcgcgacaatgctgataatcatggagcaggtattctgaaatttggggtcaaggctcttcatcttcagaaaaatgtgtactacaatttttaacctatagtgttgtaaatcataatcataattattgccactgagatttaaactgtttatttttaagcaatattattcagtcatctgttaattaaggaatgaaaaatcttgtttgttatattatgactacttctatatacttttacagccttatataaataatatgctattgaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="2335" stop="6210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2635" g_stop="2699" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2700" i_stop="2868" i_length="169">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2869" g_stop="2968" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="165" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2969" i_stop="3065" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3066" g_stop="3107" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="207" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3108" i_stop="3461" i_length="354">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3462" g_stop="3503" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="249" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3504" i_stop="3868" i_length="365">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3869" g_stop="4058" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="439" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4059" i_stop="5647" i_length="1589">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5648" g_stop="5910" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="702" r_length="263" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E375149" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2635" e_stop="2699"/>
          <exon e_start="2869" e_stop="2968"/>
          <exon e_start="3066" e_stop="3107"/>
          <exon e_start="3462" e_stop="3503"/>
          <exon e_start="3869" e_stop="4058"/>
          <exon e_start="5648" e_stop="5910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACTACCAGCAAGAAGCATCCAAACTGCGACGACAAATTCGAGATATACAGACTTATAACAGGTCAGTCCAAAGTGGACTTCTCTAATATAAATCATTGTGTACTATCAGAAAATCACTAATTTTTATTGAATTTTTTTGTTGGAATTTAACAGAATATGGAATGTCGAAAATTAGAGATTTTCTAGTAGTGACCAAAGTTGTAGTAATTATGATTTTTTGTTTTGTTTAGGCAAATAGTTGGAGAGGCATTGGGCAGTTTAAGCCCTAGAGACCTCAAGAATTTGGAAGGGAAACTTGAAAAGGCCATTGGTAGAGTCCGTTCCAAAAAGGTAAATAATTCAACTTTTTGTTAGCTGATTTTCACTGTTTTCTTCTTATTATTACAAAGGTAAAAAACTGACATTTTTTTATTTTATCATTTTCCAGAATGAATTGCTTTTCTCAGAAATAGAGCTCATGCAAAAGAGGGTAAAACTACTAATTTATGTGCTTTCCTTAATTATATATTTATAATCATGATGTTCAGGTCAGTTTGCGTGCACTTAAATTAATTTTACAAGATATCTGCTACCTTTCACTAGCAATAAATTACCTAGTAGTTTTGCCTCATCTGTATTCGAACATGAAACATCATGAACTTAATATTCAGTTTTATTAATCAGTAAACCACCCCCTTAAATGCAAAATATAGACGACATACTTCAATCAACTTTACGTTTAGATGAGTCAAGATAAATTGAGCTAATAAATAAATAGATCATTAATTAACTTATCCAAATTTTATAAATTTTATTTTCATGAACTAATCTTATCACTTGACAGGAGATTGAGCTGCAGAACGCCAACATGTATCTACGCGCAAAGGTCCTATTATTTTCTCTATGCCTTTATGTTACGATAGGACTCTACTAGTATCTGGACGTTTGACCATGTTACATTGTGAAATTTTTTTTTAAAAAAATTTTTGTTTTTAAAATTGAAAATGATATTTCAAAATTGAAATTGTGTTTGACCATGTCAAATTAAAGTTGTTTTCTACTTTGTGTGAGTGATTTGGAGTGAATAGTCAAAAACACATTTTCGTTGTTTTTCAAATTCTTGAATTCAACTATGACGAAACGTGCTTTTTCAGAGTTCAACTCCGGAAAAATTGAAAATTTTTCATGATCAAACGCCTCCTTGATCATTTTAACTTGAAAATTAATCCTTGAAATGTACATATGTAGCAGATAGCAGAGGTAGAGAGAGCACAAGAGCAAATGAACTTGATGCCTGGAGGCGGAGGCGGAGGCGGAGGCGGAGGAGGAGGAGGATCTGATCATCAATACCATCATCAGCCAAATTACGAAGATGCTCGCAATAACTTCCTGCCTGTAAATCTCCTGGAACCAAATCCTCATTACTCTCGTCGCGACAATGGTGACCAAACTCCTCTCCAGCTTGTGTATGCCTCTCTTCCTTCTTAATTATAATTTTGTAATTTATTAGTTAGACTCACATGAGTGATAAATTTTACTAAAAACTTATTAAGGTTTTAAGTATGGATTGAGATTTTATACCATGAAACAAAAACTTGTCATGGAAGGGGAGGTGTGAACGTTTAGCTCCCGATAATAGAGAGTTGTTCAGATGGTAAATATTCCTTACTTTCAATTCTAAAGATGAGTTATCAAGAGAGCAAAACGGGTGGAAGCTCTCTGAGGAGGGGTAGAAAAAAAAGGAAATTTTACCTTTTAGTACAATTAGAATATGAAACTCGAGAAAAAATAATAGTTGAAATATGTTTTTTTTTTTGACTATTTTCTCTAAAACTTCAATTAGTGGAGTCTTTGTTATATCAAAGCTGGGATAAACTAATCCCATAATAGCTTTGATAGTCCAAAAAACCTGGAACTTCATTTTAGGTTTATAGAATTGTTTTTGGTGTTCTTACCAAAACCAGGGTCAAAGCTACAACTTTGCCCACAGATTTGGTAAAATCTAATAATTTTGGCTCAAATCATATATTTGTGTTTAAAAGTTTAAACTAAAATGTATTCAATAATTTGTTGAGGACCCAGTAAACAACAGATTATGCCTCACTAAAAATTACTTTATGTGAAGACGGTGATTCATTATGTGCTTTTAACCTAACTCAAGCCAAAAAAAATATTTATTCAATAGTCACCACTTGCCACTTTTGCTCCCAAATCTTTCTGGTTGTTCTTTTCAAAAAACATTGGTTACATCTTTTTACGTCATTCATTACCAATAACCAGTTTATAGATGAGTGTTCTTGAAGTAGTCAGTCTAGATCTGAACCTACATGCTAAGTAGATGACTTGCTAGGCGAGCGGAGCGGAACCTAAGATTTCTTGTAAATATTTTCAGTCAATCCACCCATTGCCTTAATGTTTTGTGTCCAATGCTCAAAACTTTCTTACTTTTTGTCTTCATTTATATGTGTTGTAAAGAGATTGTCAGAATCTTAAAGAAAGACAAGAAACTTTGTCAAATCTAAGAAGAACTAAGTCTATGGTCAGGGGAAGATTAACTGATGGGAGTTTGCGGAACACAATAACATTAGCGTGAATTTCGTATTTGTGTTAAGAAATTCACTTAATAGACATAAATAATCTTATGTAGAACAAAGTGATCCAAAATTCATTACTTTAGCTAGCGTTTGGCTATAAATTTTGGATCAAATTTTAAGAAAATTCCACTTTCACTACTAGAAATAAAAGGGTTTTTTCCATTGCAAATCAATCGAAAATTTGTGTTACAAAATATGATTTTTCCACCAAAGCAGTTCATTGTGAAAACACACGGTGGAGAAACAAATTGTCACGGAAATATTATGAAACTTCCTAACTTTTCCTTGCGAAAACATTACTGTTTTTTATTTTCGTTCAATCAAAATATATGTGGAAATAGCTACTGAAAAGTGATTCTTAGTAGTGCTTAATTACTTCAATTATTTTTAACTGATTATTTCTCCATTTTTGTCTTGGCTGGTTTTATTTATGCAGCTGATAATCATGGAGCAGGTATTCTGAAATTTGGGGTCAAGGCTCTTCATCTTCAGAAAAATGTGTACTACAATTTTTAACCTATAGTGTTGTAAATCATAATCATAATTATTGCCACTGAGATTTAAACTGTTTATTTTTAAGCAATATTATTCAGTCATCTGTTAATTAAGGAATGAAAAATCTTGTTTGTTATATTATGACTACTTCTATATACTTTTACAGCCTTATATAAATAATATGCTATTGAACTATACATACAA</genome_strand>
        <mrna_strand>CAGTACTACCAGCAAGAAGCATCCAAACTGCGACGACAAATTCGAGATATACAGACTTATAACAG.........................................................................................................................................................................GCAAATAGTTGGAGAGGCATTGGGCAGTTTAAGCCCTAGAGACCTCAAGAATTTGGAAGGGAAACTTGAAAAGGCCATTGGTAGAGTCCGTTCCAAAAAG.................................................................................................AATGAATTGCTTTTCTCAGAAATAGAGCTCATGCAAAAGAGG..................................................................................................................................................................................................................................................................................................................................................................GAGATTGAGCTGCAGAACGCCAACATGTATCTACGCGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................ATAGCAGAGGTAGAGAGAGCACAAGAGCAAATGAACTTGATGCCTGGAGGCGGAGGCGGAGGCGGAGGCGGAGGAGGAGGAGGATCTGATCATCAATACCATCATCAGCCAAATTACGAAGATGCTCGCAATAACTTCCTGCCTGTAAATCTCCTGGAACCAAATCCTCATTACTCTCGTCGCGACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATAATCATGGAGCAGGTATTCTGAAATTTGGGGTCAAGGCTCTTCATCTTCAGAAAAATGTGTACTACAATTTTTAACCTATAGTGTTGTAAATCATAATCATAATTATTGCCACTGAGATTTAAACTGTTTATTTTTAAGCAATATTATTCAGTCATCTGTTAATTAAGGAATGAAAAATCTTGTTTGTTATATTATGACTACTTCTATATACTTTTACAGCCTTATATAAATAATATGCTATTGAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578267" ref_strand="-" ref_description="SGN-E578267 [LE12BF01]">
      <seq>ctaacactcagtactaccagcaagaagcatccaaactgcgacggcaaattcgagatatacagacttataacaggcaaatagttggagaggcattgggcagtttaagccctagagacctcaagaatttggaagggaaacttgaaaaggccattggtagagtccgttccaaaaagaatgaattgcttttctcagaaatagagctcatgcaaaagagggagattgagctgcagaacgccaacatgtatctacgcgcaaagatagcagaggtagagagagcacaagagcaaatgaacttgatgcctgtaggcggagacggaggcggaggcggaggaggaggaggatctgatcatcaataccatcatcagccaaattacgaagatgctcgcaataacttcctgcctgtaaatctcctggaaccaaatcctcattactctcgtcgcgacaatggtgaccaaactcctctccagcttgtctgataatcatggagcaggtattctgaaatttggggtcaaggctcttcatcttcagaaaaatgtgtactacaatttttaacctatagtgttgtaaatcataatcataattattgccactgagatttaaactgtttatttttaagcaatattattcagtcatctgttaattaaggaatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="2333" stop="6130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2638" g_stop="2699" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="73" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2700" i_stop="2868" i_length="169">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2869" g_stop="2968" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="173" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2969" i_stop="3065" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3066" g_stop="3107" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="215" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3108" i_stop="3461" i_length="354">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3462" g_stop="3503" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="257" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3504" i_stop="3868" i_length="365">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3869" g_stop="4083" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="472" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4084" i_stop="5647" i_length="1564">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5648" g_stop="5829" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="654" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E578267" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578267" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2638" e_stop="2699"/>
          <exon e_start="2869" e_stop="2968"/>
          <exon e_start="3066" e_stop="3107"/>
          <exon e_start="3462" e_stop="3503"/>
          <exon e_start="3869" e_stop="4083"/>
          <exon e_start="5648" e_stop="5829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTACCAGCAAGAAGCATCCAAACTGCGACGACAAATTCGAGATATACAGACTTATAACAGGTCAGTCCAAAGTGGACTTCTCTAATATAAATCATTGTGTACTATCAGAAAATCACTAATTTTTATTGAATTTTTTTGTTGGAATTTAACAGAATATGGAATGTCGAAAATTAGAGATTTTCTAGTAGTGACCAAAGTTGTAGTAATTATGATTTTTTGTTTTGTTTAGGCAAATAGTTGGAGAGGCATTGGGCAGTTTAAGCCCTAGAGACCTCAAGAATTTGGAAGGGAAACTTGAAAAGGCCATTGGTAGAGTCCGTTCCAAAAAGGTAAATAATTCAACTTTTTGTTAGCTGATTTTCACTGTTTTCTTCTTATTATTACAAAGGTAAAAAACTGACATTTTTTTATTTTATCATTTTCCAGAATGAATTGCTTTTCTCAGAAATAGAGCTCATGCAAAAGAGGGTAAAACTACTAATTTATGTGCTTTCCTTAATTATATATTTATAATCATGATGTTCAGGTCAGTTTGCGTGCACTTAAATTAATTTTACAAGATATCTGCTACCTTTCACTAGCAATAAATTACCTAGTAGTTTTGCCTCATCTGTATTCGAACATGAAACATCATGAACTTAATATTCAGTTTTATTAATCAGTAAACCACCCCCTTAAATGCAAAATATAGACGACATACTTCAATCAACTTTACGTTTAGATGAGTCAAGATAAATTGAGCTAATAAATAAATAGATCATTAATTAACTTATCCAAATTTTATAAATTTTATTTTCATGAACTAATCTTATCACTTGACAGGAGATTGAGCTGCAGAACGCCAACATGTATCTACGCGCAAAGGTCCTATTATTTTCTCTATGCCTTTATGTTACGATAGGACTCTACTAGTATCTGGACGTTTGACCATGTTACATTGTGAAATTTTTTTTTAAAAAAATTTTTGTTTTTAAAATTGAAAATGATATTTCAAAATTGAAATTGTGTTTGACCATGTCAAATTAAAGTTGTTTTCTACTTTGTGTGAGTGATTTGGAGTGAATAGTCAAAAACACATTTTCGTTGTTTTTCAAATTCTTGAATTCAACTATGACGAAACGTGCTTTTTCAGAGTTCAACTCCGGAAAAATTGAAAATTTTTCATGATCAAACGCCTCCTTGATCATTTTAACTTGAAAATTAATCCTTGAAATGTACATATGTAGCAGATAGCAGAGGTAGAGAGAGCACAAGAGCAAATGAACTTGATGCCTGGAGGCGGAGGCGGAGGCGGAGGCGGAGGAGGAGGAGGATCTGATCATCAATACCATCATCAGCCAAATTACGAAGATGCTCGCAATAACTTCCTGCCTGTAAATCTCCTGGAACCAAATCCTCATTACTCTCGTCGCGACAATGGTGACCAAACTCCTCTCCAGCTTGTGTATGCCTCTCTTCCTTCTTAATTATAATTTTGTAATTTATTAGTTAGACTCACATGAGTGATAAATTTTACTAAAAACTTATTAAGGTTTTAAGTATGGATTGAGATTTTATACCATGAAACAAAAACTTGTCATGGAAGGGGAGGTGTGAACGTTTAGCTCCCGATAATAGAGAGTTGTTCAGATGGTAAATATTCCTTACTTTCAATTCTAAAGATGAGTTATCAAGAGAGCAAAACGGGTGGAAGCTCTCTGAGGAGGGGTAGAAAAAAAAGGAAATTTTACCTTTTAGTACAATTAGAATATGAAACTCGAGAAAAAATAATAGTTGAAATATGTTTTTTTTTTTGACTATTTTCTCTAAAACTTCAATTAGTGGAGTCTTTGTTATATCAAAGCTGGGATAAACTAATCCCATAATAGCTTTGATAGTCCAAAAAACCTGGAACTTCATTTTAGGTTTATAGAATTGTTTTTGGTGTTCTTACCAAAACCAGGGTCAAAGCTACAACTTTGCCCACAGATTTGGTAAAATCTAATAATTTTGGCTCAAATCATATATTTGTGTTTAAAAGTTTAAACTAAAATGTATTCAATAATTTGTTGAGGACCCAGTAAACAACAGATTATGCCTCACTAAAAATTACTTTATGTGAAGACGGTGATTCATTATGTGCTTTTAACCTAACTCAAGCCAAAAAAAATATTTATTCAATAGTCACCACTTGCCACTTTTGCTCCCAAATCTTTCTGGTTGTTCTTTTCAAAAAACATTGGTTACATCTTTTTACGTCATTCATTACCAATAACCAGTTTATAGATGAGTGTTCTTGAAGTAGTCAGTCTAGATCTGAACCTACATGCTAAGTAGATGACTTGCTAGGCGAGCGGAGCGGAACCTAAGATTTCTTGTAAATATTTTCAGTCAATCCACCCATTGCCTTAATGTTTTGTGTCCAATGCTCAAAACTTTCTTACTTTTTGTCTTCATTTATATGTGTTGTAAAGAGATTGTCAGAATCTTAAAGAAAGACAAGAAACTTTGTCAAATCTAAGAAGAACTAAGTCTATGGTCAGGGGAAGATTAACTGATGGGAGTTTGCGGAACACAATAACATTAGCGTGAATTTCGTATTTGTGTTAAGAAATTCACTTAATAGACATAAATAATCTTATGTAGAACAAAGTGATCCAAAATTCATTACTTTAGCTAGCGTTTGGCTATAAATTTTGGATCAAATTTTAAGAAAATTCCACTTTCACTACTAGAAATAAAAGGGTTTTTTCCATTGCAAATCAATCGAAAATTTGTGTTACAAAATATGATTTTTCCACCAAAGCAGTTCATTGTGAAAACACACGGTGGAGAAACAAATTGTCACGGAAATATTATGAAACTTCCTAACTTTTCCTTGCGAAAACATTACTGTTTTTTATTTTCGTTCAATCAAAATATATGTGGAAATAGCTACTGAAAAGTGATTCTTAGTAGTGCTTAATTACTTCAATTATTTTTAACTGATTATTTCTCCATTTTTGTCTTGGCTGGTTTTATTTATGCAGCTGATAATCATGGAGCAGGTATTCTGAAATTTGGGGTCAAGGCTCTTCATCTTCAGAAAAATGTGTACTACAATTTTTAACCTATAGTGTTGTAAATCATAATCATAATTATTGCCACTGAGATTTAAACTGTTTATTTTTAAGCAATATTATTCAGTCATCTGTTAATTAAGGAATGAAAA</genome_strand>
        <mrna_strand>TACTACCAGCAAGAAGCATCCAAACTGCGACGGCAAATTCGAGATATACAGACTTATAACAG.........................................................................................................................................................................GCAAATAGTTGGAGAGGCATTGGGCAGTTTAAGCCCTAGAGACCTCAAGAATTTGGAAGGGAAACTTGAAAAGGCCATTGGTAGAGTCCGTTCCAAAAAG.................................................................................................AATGAATTGCTTTTCTCAGAAATAGAGCTCATGCAAAAGAGG..................................................................................................................................................................................................................................................................................................................................................................GAGATTGAGCTGCAGAACGCCAACATGTATCTACGCGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................ATAGCAGAGGTAGAGAGAGCACAAGAGCAAATGAACTTGATGCCTGTAGGCGGAGACGGAGGCGGAGGCGGAGGAGGAGGAGGATCTGATCATCAATACCATCATCAGCCAAATTACGAAGATGCTCGCAATAACTTCCTGCCTGTAAATCTCCTGGAACCAAATCCTCATTACTCTCGTCGCGACAATGGTGACCAAACTCCTCTCCAGCTTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATAATCATGGAGCAGGTATTCTGAAATTTGGGGTCAAGGCTCTTCATCTTCAGAAAAATGTGTACTACAATTTTTAACCTATAGTGTTGTAAATCATAATCATAATTATTGCCACTGAGATTTAAACTGTTTATTTTTAAGCAATATTATTCAGTCATCTGTTAATTAAGGAATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375226" ref_strand="+" ref_description="SGN-E375226 [TUS-34-D17](-)">
      <seq>agacttataacaggcaaatagttggagaggcattgggcagtctaagccctagagacctcaagaatttggaagggaaacttgaaaaggccattggtagagtccgttccaaaaagaatgaattgcttttctcagaaatagagctcatgcaaaagagggagactgagctgcagaacgccaacatgtatctacgcgcaaagatagcagaggtagagagagcacaagagcaaatgaacttgatgcctggaggcggaggcggaggcggaggcggaggaggaggaggatctgatcatcaataccatcatcagccaaattacgaagatgctcgcaataacttcctgcctgtaaatctcctggaaccaaatcctcattactctcgtcgcgacaatgctgataatcatggagcaggtattttgaaatttggggtcaaggctcttcatcttcagaaaaatgtgtactacaatttttaacctatagtgttgtaaatcataatcataattattgccactgagatttaaactgtttatttttaagcaatattattcagtcatctgttaattaaggaatgaaaaatcttgtttgttatattatgactacttctatatacttttacagctcttatattaataatatgctattgaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="2567" stop="6210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2687" g_stop="2699" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2700" i_stop="2868" i_length="169">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2869" g_stop="2968" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="113" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2969" i_stop="3065" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3066" g_stop="3107" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="155" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3108" i_stop="3461" i_length="354">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3462" g_stop="3503" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="197" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3504" i_stop="3868" i_length="365">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3869" g_stop="4058" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="387" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4059" i_stop="5647" i_length="1589">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5648" g_stop="5910" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="651" r_length="264" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E375226" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2687" e_stop="2699"/>
          <exon e_start="2869" e_stop="2968"/>
          <exon e_start="3066" e_stop="3107"/>
          <exon e_start="3462" e_stop="3503"/>
          <exon e_start="3869" e_stop="4058"/>
          <exon e_start="5648" e_stop="5910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTATAACAGGTCAGTCCAAAGTGGACTTCTCTAATATAAATCATTGTGTACTATCAGAAAATCACTAATTTTTATTGAATTTTTTTGTTGGAATTTAACAGAATATGGAATGTCGAAAATTAGAGATTTTCTAGTAGTGACCAAAGTTGTAGTAATTATGATTTTTTGTTTTGTTTAGGCAAATAGTTGGAGAGGCATTGGGCAGTTTAAGCCCTAGAGACCTCAAGAATTTGGAAGGGAAACTTGAAAAGGCCATTGGTAGAGTCCGTTCCAAAAAGGTAAATAATTCAACTTTTTGTTAGCTGATTTTCACTGTTTTCTTCTTATTATTACAAAGGTAAAAAACTGACATTTTTTTATTTTATCATTTTCCAGAATGAATTGCTTTTCTCAGAAATAGAGCTCATGCAAAAGAGGGTAAAACTACTAATTTATGTGCTTTCCTTAATTATATATTTATAATCATGATGTTCAGGTCAGTTTGCGTGCACTTAAATTAATTTTACAAGATATCTGCTACCTTTCACTAGCAATAAATTACCTAGTAGTTTTGCCTCATCTGTATTCGAACATGAAACATCATGAACTTAATATTCAGTTTTATTAATCAGTAAACCACCCCCTTAAATGCAAAATATAGACGACATACTTCAATCAACTTTACGTTTAGATGAGTCAAGATAAATTGAGCTAATAAATAAATAGATCATTAATTAACTTATCCAAATTTTATAAATTTTATTTTCATGAACTAATCTTATCACTTGACAGGAGATTGAGCTGCAGAACGCCAACATGTATCTACGCGCAAAGGTCCTATTATTTTCTCTATGCCTTTATGTTACGATAGGACTCTACTAGTATCTGGACGTTTGACCATGTTACATTGTGAAATTTTTTTTTAAAAAAATTTTTGTTTTTAAAATTGAAAATGATATTTCAAAATTGAAATTGTGTTTGACCATGTCAAATTAAAGTTGTTTTCTACTTTGTGTGAGTGATTTGGAGTGAATAGTCAAAAACACATTTTCGTTGTTTTTCAAATTCTTGAATTCAACTATGACGAAACGTGCTTTTTCAGAGTTCAACTCCGGAAAAATTGAAAATTTTTCATGATCAAACGCCTCCTTGATCATTTTAACTTGAAAATTAATCCTTGAAATGTACATATGTAGCAGATAGCAGAGGTAGAGAGAGCACAAGAGCAAATGAACTTGATGCCTGGAGGCGGAGGCGGAGGCGGAGGCGGAGGAGGAGGAGGATCTGATCATCAATACCATCATCAGCCAAATTACGAAGATGCTCGCAATAACTTCCTGCCTGTAAATCTCCTGGAACCAAATCCTCATTACTCTCGTCGCGACAATGGTGACCAAACTCCTCTCCAGCTTGTGTATGCCTCTCTTCCTTCTTAATTATAATTTTGTAATTTATTAGTTAGACTCACATGAGTGATAAATTTTACTAAAAACTTATTAAGGTTTTAAGTATGGATTGAGATTTTATACCATGAAACAAAAACTTGTCATGGAAGGGGAGGTGTGAACGTTTAGCTCCCGATAATAGAGAGTTGTTCAGATGGTAAATATTCCTTACTTTCAATTCTAAAGATGAGTTATCAAGAGAGCAAAACGGGTGGAAGCTCTCTGAGGAGGGGTAGAAAAAAAAGGAAATTTTACCTTTTAGTACAATTAGAATATGAAACTCGAGAAAAAATAATAGTTGAAATATGTTTTTTTTTTTGACTATTTTCTCTAAAACTTCAATTAGTGGAGTCTTTGTTATATCAAAGCTGGGATAAACTAATCCCATAATAGCTTTGATAGTCCAAAAAACCTGGAACTTCATTTTAGGTTTATAGAATTGTTTTTGGTGTTCTTACCAAAACCAGGGTCAAAGCTACAACTTTGCCCACAGATTTGGTAAAATCTAATAATTTTGGCTCAAATCATATATTTGTGTTTAAAAGTTTAAACTAAAATGTATTCAATAATTTGTTGAGGACCCAGTAAACAACAGATTATGCCTCACTAAAAATTACTTTATGTGAAGACGGTGATTCATTATGTGCTTTTAACCTAACTCAAGCCAAAAAAAATATTTATTCAATAGTCACCACTTGCCACTTTTGCTCCCAAATCTTTCTGGTTGTTCTTTTCAAAAAACATTGGTTACATCTTTTTACGTCATTCATTACCAATAACCAGTTTATAGATGAGTGTTCTTGAAGTAGTCAGTCTAGATCTGAACCTACATGCTAAGTAGATGACTTGCTAGGCGAGCGGAGCGGAACCTAAGATTTCTTGTAAATATTTTCAGTCAATCCACCCATTGCCTTAATGTTTTGTGTCCAATGCTCAAAACTTTCTTACTTTTTGTCTTCATTTATATGTGTTGTAAAGAGATTGTCAGAATCTTAAAGAAAGACAAGAAACTTTGTCAAATCTAAGAAGAACTAAGTCTATGGTCAGGGGAAGATTAACTGATGGGAGTTTGCGGAACACAATAACATTAGCGTGAATTTCGTATTTGTGTTAAGAAATTCACTTAATAGACATAAATAATCTTATGTAGAACAAAGTGATCCAAAATTCATTACTTTAGCTAGCGTTTGGCTATAAATTTTGGATCAAATTTTAAGAAAATTCCACTTTCACTACTAGAAATAAAAGGGTTTTTTCCATTGCAAATCAATCGAAAATTTGTGTTACAAAATATGATTTTTCCACCAAAGCAGTTCATTGTGAAAACACACGGTGGAGAAACAAATTGTCACGGAAATATTATGAAACTTCCTAACTTTTCCTTGCGAAAACATTACTGTTTTTTATTTTCGTTCAATCAAAATATATGTGGAAATAGCTACTGAAAAGTGATTCTTAGTAGTGCTTAATTACTTCAATTATTTTTAACTGATTATTTCTCCATTTTTGTCTTGGCTGGTTTTATTTATGCAGCTGATAATCATGGAGCAGGTATTCTGAAATTTGGGGTCAAGGCTCTTCATCTTCAGAAAAATGTGTACTACAATTTTTAACCTATAGTGTTGTAAATCATAATCATAATTATTGCCACTGAGATTTAAACTGTTTATTTTTAAGCAATATTATTCAGTCATCTGTTAATTAAGGAATGAAAAATCTTGTTTGTTATATTATGACTACTTCTATATACTTTTACAGC-CTTATATAAATAATATGCTATTGAACTATACATACAA</genome_strand>
        <mrna_strand>AGACTTATAACAG.........................................................................................................................................................................GCAAATAGTTGGAGAGGCATTGGGCAGTCTAAGCCCTAGAGACCTCAAGAATTTGGAAGGGAAACTTGAAAAGGCCATTGGTAGAGTCCGTTCCAAAAAG.................................................................................................AATGAATTGCTTTTCTCAGAAATAGAGCTCATGCAAAAGAGG..................................................................................................................................................................................................................................................................................................................................................................GAGACTGAGCTGCAGAACGCCAACATGTATCTACGCGCAAAG.............................................................................................................................................................................................................................................................................................................................................................................ATAGCAGAGGTAGAGAGAGCACAAGAGCAAATGAACTTGATGCCTGGAGGCGGAGGCGGAGGCGGAGGCGGAGGAGGAGGAGGATCTGATCATCAATACCATCATCAGCCAAATTACGAAGATGCTCGCAATAACTTCCTGCCTGTAAATCTCCTGGAACCAAATCCTCATTACTCTCGTCGCGACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATAATCATGGAGCAGGTATTTTGAAATTTGGGGTCAAGGCTCTTCATCTTCAGAAAAATGTGTACTACAATTTTTAACCTATAGTGTTGTAAATCATAATCATAATTATTGCCACTGAGATTTAAACTGTTTATTTTTAAGCAATATTATTCAGTCATCTGTTAATTAAGGAATGAAAAATCTTGTTTGTTATATTATGACTACTTCTATATACTTTTACAGCTCTTATATTAATAATATGCTATTGAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578115" ref_strand="-" ref_description="SGN-E578115 [LE08EC12]">
      <seq>tcaaattgatcaatctcctggaaccaaatcctcattactctcgtcgcgacaatggtgaccaaactcctctccagcttgtctgataatcatggagcaggtattctgaaatttggggtcaaggctcttcatcttcagaaaaatgtgtactacaatttttaacctatagtgttgtaaatcataatcataattattgccactgagatttaaactgtttatttttaagcaatattattcagtcatctgttaattaaggaatgaaaaatcttgtttgttatattatgactacttctatataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="3712" stop="6163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4005" g_stop="4083" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4084" i_stop="5647" i_length="1564">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5648" g_stop="5858" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="290" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E578115" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578115" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4005" e_stop="4083"/>
          <exon e_start="5648" e_stop="5858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGCCTGTAAATCTCCTGGAACCAAATCCTCATTACTCTCGTCGCGACAATGGTGACCAAACTCCTCTCCAGCTTGTGTATGCCTCTCTTCCTTCTTAATTATAATTTTGTAATTTATTAGTTAGACTCACATGAGTGATAAATTTTACTAAAAACTTATTAAGGTTTTAAGTATGGATTGAGATTTTATACCATGAAACAAAAACTTGTCATGGAAGGGGAGGTGTGAACGTTTAGCTCCCGATAATAGAGAGTTGTTCAGATGGTAAATATTCCTTACTTTCAATTCTAAAGATGAGTTATCAAGAGAGCAAAACGGGTGGAAGCTCTCTGAGGAGGGGTAGAAAAAAAAGGAAATTTTACCTTTTAGTACAATTAGAATATGAAACTCGAGAAAAAATAATAGTTGAAATATGTTTTTTTTTTTGACTATTTTCTCTAAAACTTCAATTAGTGGAGTCTTTGTTATATCAAAGCTGGGATAAACTAATCCCATAATAGCTTTGATAGTCCAAAAAACCTGGAACTTCATTTTAGGTTTATAGAATTGTTTTTGGTGTTCTTACCAAAACCAGGGTCAAAGCTACAACTTTGCCCACAGATTTGGTAAAATCTAATAATTTTGGCTCAAATCATATATTTGTGTTTAAAAGTTTAAACTAAAATGTATTCAATAATTTGTTGAGGACCCAGTAAACAACAGATTATGCCTCACTAAAAATTACTTTATGTGAAGACGGTGATTCATTATGTGCTTTTAACCTAACTCAAGCCAAAAAAAATATTTATTCAATAGTCACCACTTGCCACTTTTGCTCCCAAATCTTTCTGGTTGTTCTTTTCAAAAAACATTGGTTACATCTTTTTACGTCATTCATTACCAATAACCAGTTTATAGATGAGTGTTCTTGAAGTAGTCAGTCTAGATCTGAACCTACATGCTAAGTAGATGACTTGCTAGGCGAGCGGAGCGGAACCTAAGATTTCTTGTAAATATTTTCAGTCAATCCACCCATTGCCTTAATGTTTTGTGTCCAATGCTCAAAACTTTCTTACTTTTTGTCTTCATTTATATGTGTTGTAAAGAGATTGTCAGAATCTTAAAGAAAGACAAGAAACTTTGTCAAATCTAAGAAGAACTAAGTCTATGGTCAGGGGAAGATTAACTGATGGGAGTTTGCGGAACACAATAACATTAGCGTGAATTTCGTATTTGTGTTAAGAAATTCACTTAATAGACATAAATAATCTTATGTAGAACAAAGTGATCCAAAATTCATTACTTTAGCTAGCGTTTGGCTATAAATTTTGGATCAAATTTTAAGAAAATTCCACTTTCACTACTAGAAATAAAAGGGTTTTTTCCATTGCAAATCAATCGAAAATTTGTGTTACAAAATATGATTTTTCCACCAAAGCAGTTCATTGTGAAAACACACGGTGGAGAAACAAATTGTCACGGAAATATTATGAAACTTCCTAACTTTTCCTTGCGAAAACATTACTGTTTTTTATTTTCGTTCAATCAAAATATATGTGGAAATAGCTACTGAAAAGTGATTCTTAGTAGTGCTTAATTACTTCAATTATTTTTAACTGATTATTTCTCCATTTTTGTCTTGGCTGGTTTTATTTATGCAGCTGATAATCATGGAGCAGGTATTCTGAAATTTGGGGTCAAGGCTCTTCATCTTCAGAAAAATGTGTACTACAATTTTTAACCTATAGTGTTGTAAATCATAATCATAATTATTGCCACTGAGATTTAAACTGTTTATTTTTAAGCAATATTATTCAGTCATCTGTTAATTAAGGAATGAAAAATCTTGTTTGTTATATTATGACTACTTCT</genome_strand>
        <mrna_strand>TCAAATTGATCAATCTCCTGGAACCAAATCCTCATTACTCTCGTCGCGACAATGGTGACCAAACTCCTCTCCAGCTTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATAATCATGGAGCAGGTATTCTGAAATTTGGGGTCAAGGCTCTTCATCTTCAGAAAAATGTGTACTACAATTTTTAACCTATAGTGTTGTAAATCATAATCATAATTATTGCCACTGAGATTTAAACTGTTTATTTTTAAGCAATATTATTCAGTCATCTGTTAATTAAGGAATGAAAAATCTTGTTTGTTATATTATGACTACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355290" ref_strand="-" ref_description="SGN-E355290 [cTOS-18-C3]">
      <seq>agtagtctccctgtatagacgagaagctagcatgccatatactactcagattagatactgtttgacaatcttcgagatgcaataggtttatataggtataggtattgtaaaagtaattttccccgtatgtttccctaaatatatatatatatatatatataaccatcccttagttttactctttgaatactctattcttctctatattgagaccatatgtagcttaatttcatctatggttatgaaaaataatgatatcatgggtagatgatcgtcaacaactcaagacagaaaacgcttttaatgaaggtcaagtgcaatctgatttggttattccttttcaatatcttgtgtgtttataggaacttattccgaaatttttactgaatgtaagcttatttcttcttcttcttgtaggatgaactaaatcaatgctctaaaaatatacataatactgttttttagttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="6958" stop="5888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6658" g_stop="6189" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="504"/>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E355290" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355290" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6658" e_stop="6189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTCTCCCTGTATAGACGAGAAGCTAGCATGCCATATACTACTCAGATTAGATACTGTTTGACAATCTTCGAGATGCAATAGGTTTATATAGGTATAGGTATTGTAAAAGTAATTTTCCACGTATGTTTCCTTAAATATATATATATATATATATATAACAATACCTTAGTTTTACTCTTTGAATACTCTATTCTTCTCTATATTGAGACCATATGTAGCTTAATTTCATCTATGGTTATGAAAAATAATGATATCATGGGTAGATGATCGTCAACAACTCAAGACAGAAAACGCTTCTAATGAAGGTCAAGTGCAATCTGATTTGGTTATTCCTTTTCAATATCTTGTGTGTTTATAGGAACTTATTCCGAAATTTCTACTGAATGTAAGCTTATTTCTTCTTCTTCTTGTAGGATGAACTAAATCAATGCTCTAAAAATATACATAATACTGTTTTTTAGTTTTG</genome_strand>
        <mrna_strand>AGTAGTCTCCCTGTATAGACGAGAAGCTAGCATGCCATATACTACTCAGATTAGATACTGTTTGACAATCTTCGAGATGCAATAGGTTTATATAGGTATAGGTATTGTAAAAGTAATTTTCCCCGTATGTTTCCCTAAATATATATATATATATATATATAACCATCCCTTAGTTTTACTCTTTGAATACTCTATTCTTCTCTATATTGAGACCATATGTAGCTTAATTTCATCTATGGTTATGAAAAATAATGATATCATGGGTAGATGATCGTCAACAACTCAAGACAGAAAACGCTTTTAATGAAGGTCAAGTGCAATCTGATTTGGTTATTCCTTTTCAATATCTTGTGTGTTTATAGGAACTTATTCCGAAATTTTTACTGAATGTAAGCTTATTTCTTCTTCTTCTTGTAGGATGAACTAAATCAATGCTCTAAAAATATACATAATACTGTTTTTTAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715292" ref_strand="+" ref_description="SGN-E715292 [FB13DE03]">
      <seq>gccaagccatggcttgagattggggcccctgagatacgaagcttgtggagccgccatgtaaatatgtcaagtgaattcattaggaaatgtggaatcatggagtgaacaattaaggggacaaagtctcactctcaacgtgaaatgtatcagaatttagcctcgatatatattctgagttggagggaagaaggtacagccttcagtctccaatcagaccacacagtagtctccctgtatagacgagaagctagcatgccatatactactcagattagatactgtttgacaatcttcgagatgcaataggtttatataggtataggtattgtaaaagtaattttccacgtatgtttccttaaatatatatatatatatatatataacaataccttagttttactctttgaatactctattcttctctatattgagaccatatgtagcttaatttcatctatggttatgaaaaataatgatatcatgggtagatgatcgtccacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="7179" stop="6078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6879" g_stop="6364" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E715292" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6879" e_stop="6364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGCCATGGCTTGAGATTGGGGCCCCTGAGATACGAAGCTTGTGGAGCCGCCATGTAAATATGTCAAGTGAATTCATTAGGAAATGTGGAATCATGGAGTGAACAATTAAGGGGACAAAGTCTCACTCTCAACGTGAAATGTATCAGAATTTAGCCTCGATATATATTCTGAGTTGGAGGGAAGAAGGTACAGCCTTCAGTCTCCAATCAGACCACACAGTAGTCTCCCTGTATAGACGAGAAGCTAGCATGCCATATACTACTCAGATTAGATACTGTTTGACAATCTTCGAGATGCAATAGGTTTATATAGGTATAGGTATTGTAAAAGTAATTTTCCACGTATGTTTCCTTAAATATATATATATATATATATATAACAATACCTTAGTTTTACTCTTTGAATACTCTATTCTTCTCTATATTGAGACCATATGTAGCTTAATTTCATCTATGGTTATGAAAAATAATGATATCATGGGTAGATGATCGTCAACAACTCAAGACAGAAAA</genome_strand>
        <mrna_strand>GCCAAGCCATGGCTTGAGATTGGGGCCCCTGAGATACGAAGCTTGTGGAGCCGCCATGTAAATATGTCAAGTGAATTCATTAGGAAATGTGGAATCATGGAGTGAACAATTAAGGGGACAAAGTCTCACTCTCAACGTGAAATGTATCAGAATTTAGCCTCGATATATATTCTGAGTTGGAGGGAAGAAGGTACAGCCTTCAGTCTCCAATCAGACCACACAGTAGTCTCCCTGTATAGACGAGAAGCTAGCATGCCATATACTACTCAGATTAGATACTGTTTGACAATCTTCGAGATGCAATAGGTTTATATAGGTATAGGTATTGTAAAAGTAATTTTCCACGTATGTTTCCTTAAATATATATATATATATATATATAACAATACCTTAGTTTTACTCTTTGAATACTCTATTCTTCTCTATATTGAGACCATATGTAGCTTAATTTCATCTATGGTTATGAAAAATAATGATATCATGGGTAGATGATCGTCCACAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542909" ref_strand="+" ref_description="SGN-E542909 [TUS-64-H7](-)">
      <seq>ccatgtaaatatgtcaagtgaattcattaggaaatgtggaatcatggagtgaacaattaaggggacaaagtctcactctcaacgtgaaatgtatcagaatttagcctcgatatatattctgagttggagggaagaaggtacacccttcagtctccaatcagaccacacagtagtctccctgtatagacgagaagctagcatgccatatactactcagattagatactgtttgacaatcttcgagatgcaataggtttatataggtataggtattgtaaaagtaattttccacgtatgtttccttaaatatatatatatatattaaaaaaaaaaaaagaaaaaaaaaaactcgaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="7126" stop="1323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6826" g_stop="6492" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6491" i_stop="6392" i_length="100">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6391" g_stop="6368" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="358" r_length="24" r_score="0.542"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E542909" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6826" e_stop="6492"/>
          <exon e_start="6391" e_stop="6368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTAAATATGTCAAGTGAATTCATTAGGAAATGTGGAATCATGGAGTGAACAATTAAGGGGACAAAGTCTCACTCTCAACGTGAAATGTATCAGAATTTAGCCTCGATATATATTCTGAGTTGGAGGGAAGAAGGTACAGCCTTCAGTCTCCAATCAGACCACACAGTAGTCTCCCTGTATAGACGAGAAGCTAGCATGCCATATACTACTCAGATTAGATACTGTTTGACAATCTTCGAGATGCAATAGGTTTATATAGGTATAGGTATTGTAAAAGTAATTTTCCACGTATGTTTCCTTAAATATATATATATATATATATATAACAATACCTTAGTTTTACTCTTTGAATACTCTATTCTTCTCTATATTGAGACCATATGTAGCTTAATTTCATCTATGGTTATGAAAAATAATGATATCATGGGTAGATGATCGTCAACAACTCAAGACAG</genome_strand>
        <mrna_strand>CCATGTAAATATGTCAAGTGAATTCATTAGGAAATGTGGAATCATGGAGTGAACAATTAAGGGGACAAAGTCTCACTCTCAACGTGAAATGTATCAGAATTTAGCCTCGATATATATTCTGAGTTGGAGGGAAGAAGGTACACCCTTCAGTCTCCAATCAGACCACACAGTAGTCTCCCTGTATAGACGAGAAGCTAGCATGCCATATACTACTCAGATTAGATACTGTTTGACAATCTTCGAGATGCAATAGGTTTATATAGGTATAGGTATTGTAAAAGTAATTTTCCACGTATGTTTCCTTAAATATATATATATATAT-TAAAAAAAAAAA....................................................................................................AAGAAAAAAAAAAACTCGAGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350012" ref_strand="+" ref_description="SGN-E350012 [cTOS-4-C16]">
      <seq>tgtggagatgactgttgccctggaagaaagtacaaggattactttaattttacgagtcctattatatcatctaagttggattatgatcgttgcggatggctttatggaatgaatgtctttgatctccaggcttggaggaagactaacatcactgcaacttaccatcactggcttaaacttaacctgaactctggtttcgaattgtggaatcctggagcacttccgccttctctaattgcttttgagggtcatgtgcaccggattgatgcttcatggcacattgctggtttaggttatcgatccattattgatgtcacacaatctgcactggaagatggagcagttgtacatttcagtggaccagccaagccatggcttgagattggggcccctgagatacgaagcttgtggagccgccatgtaaatatgtcaagtgaattcattaggaaatgtggaatcatggagtgaacaattaaggggacaaagtctcactctcaacgtgaaatgtatcagaatttagcctcgatatatattctgagttggagggaagaaggtacagccttcagtctccaatcagaccacacagtagtctccctgtatagacgagaagctagcatgccatatactactcagattagatactgtttgacaatcttcgagatgcaataggtttatataggtataggtattgntaaagtaattttccacgtatgtttccttnaatatatatatatatatatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="8060" stop="6198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7760" g_stop="7581" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7580" i_stop="7063" i_length="518">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7062" g_stop="6497" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="746" r_length="566" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E350012" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7760" e_stop="7581"/>
          <exon e_start="7062" e_stop="6497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAGATGACTGTTGCCCTGGAAGAAAGTACAAGGATTACTTTAATTTTACGAGTCCTATTATATCATCTAAGTTGGATTATGATCGTTGCGGATGGCTTTATGGAATGAATGTCTTTGATCTCCAGGCTTGGAGGAAGACTAACATCACTGCAACTTACCATCACTGGCTTAAACTTGTAAGTATAGTTCAACCCGAATTAGTTAATCAAAACTATAAACTGCATTGTCATTCGTTCTAAATGCCTATTTGTTACATGATCTCATCAATAGTCGAGAAGTGCTTTATGCGTAGCTGCTGCTGCAGAATATATCAAGTTGAGCATTCTTGCCTCTGATGCCCCAACATTTCCGTATTACACCCTGACATGCTCCATTTTAGTCCCACCATATTAAGAAAGAATTGTCATTGCTGGTTAGTAAGATGACAGTTCAGAAATAAATGATTGATACGCTCAGGCTTGTCTCCACATAGATTACATCTAGAGCACAACTGGAATCCTCTTCCCCATAATGTTTCAAGTCAATTATCATGTGAAATTACACCATAATTTGTTAGCTTTACTTCTCAAACAAAAAAGGAACAATCAATCTAATGGAATTCTAGTGTTTTTTGTCGCATTTATTTGTTTAAGCAGCTTCTTTAGTAGTGTTTGAGGATGTTCTGACATTGACCTCTCTTAATTCTATCTTACAGAACCTGAACTCTGGTTTCGAATTGTGGAATCCTGGAGCACTTCCGCCTTCTCTAATTGCTTTTGAGGGTCATGTGCACCGGATTGATGCTTCATGGCACATTGCTGGTTTAGGTTATCGATCCATTATTGATGTCACACAATCTGCACTGGAAGATGGAGCAGTTGTACATTTCAGTGGACCAGCCAAGCCATGGCTTGAGATTGGGGCCCCTGAGATACGAAGCTTGTGGAGCCGCCATGTAAATATGTCAAGTGAATTCATTAGGAAATGTGGAATCATGGAGTGAACAATTAAGGGGACAAAGTCTCACTCTCAACGTGAAATGTATCAGAATTTAGCCTCGATATATATTCTGAGTTGGAGGGAAGAAGGTACAGCCTTCAGTCTCCAATCAGACCACACAGTAGTCTCCCTGTATAGACGAGAAGCTAGCATGCCATATACTACTCAGATTAGATACTGTTTGACAATCTTCGAGATGCAATAGGTTTATATAGGTATAGGTATTGTAAAAGTAATTTTCCACGTATGTTTCCTTAAATATATATATATATATATATATAA</genome_strand>
        <mrna_strand>TGTGGAGATGACTGTTGCCCTGGAAGAAAGTACAAGGATTACTTTAATTTTACGAGTCCTATTATATCATCTAAGTTGGATTATGATCGTTGCGGATGGCTTTATGGAATGAATGTCTTTGATCTCCAGGCTTGGAGGAAGACTAACATCACTGCAACTTACCATCACTGGCTTAAACTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGAACTCTGGTTTCGAATTGTGGAATCCTGGAGCACTTCCGCCTTCTCTAATTGCTTTTGAGGGTCATGTGCACCGGATTGATGCTTCATGGCACATTGCTGGTTTAGGTTATCGATCCATTATTGATGTCACACAATCTGCACTGGAAGATGGAGCAGTTGTACATTTCAGTGGACCAGCCAAGCCATGGCTTGAGATTGGGGCCCCTGAGATACGAAGCTTGTGGAGCCGCCATGTAAATATGTCAAGTGAATTCATTAGGAAATGTGGAATCATGGAGTGAACAATTAAGGGGACAAAGTCTCACTCTCAACGTGAAATGTATCAGAATTTAGCCTCGATATATATTCTGAGTTGGAGGGAAGAAGGTACAGCCTTCAGTCTCCAATCAGACCACACAGTAGTCTCCCTGTATAGACGAGAAGCTAGCATGCCATATACTACTCAGATTAGATACTGTTTGACAATCTTCGAGATGCAATAGGTTTATATAGGTATAGGTATTGNTAAAGTAATTTTCCACGTATGTTTCCTTNAATATATATATATATATATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211458" ref_strand="+" ref_description="SGN-E211458 [cLEC-67-D1]">
      <seq>tagagattcatagattgatctgtagtcacaagcttgacagcatgaaaagggaaaatattccaaacaagtatgaacatgaaaaagatttgcagcatctacggcctagctgtacatccctcttgaatcatctgcgcatctatatccccgagcttttcccagacctgaacaagattgtatttttggacgatgatactgtagtacagcatgatttatcgtctctgtgggaacttgatctcaacgggaaagttgttggtgcagcttttgactcgagttgtggagatgactgttgccctggaagaaagtacaaggattactttaattttacgagtcctattatatcatctaagttggattatgatcgttgcggatggctttatggaatgaatgtctttgatctccaggcttggaggaagactaacatcactgcaacttaccatcactggcttaaacttaacctgaactctggtttcgaattgtggaatcctggagcacttccgccttctctaattgcttttgagggtcatgtgcaccggattgatgcttcatggcacattgctggtttaggttatcgatccattattgatgtcacacaatctgcactggaagatggagcagttgtacatttcagtggaccagcccagccatggcttgagaatggggcccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="8435" stop="6549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8135" g_stop="7987" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7986" i_stop="7884" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7883" g_stop="7581" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="452" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7580" i_stop="7063" i_length="518">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7062" g_stop="6849" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="666" r_length="214" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E211458" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8135" e_stop="7987"/>
          <exon e_start="7883" e_stop="7581"/>
          <exon e_start="7062" e_stop="6849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGATTCATAGATTGATCTGTAGTCACAAGCTTGACAGCATGAAAAGGGAAAATATTCCAAACAAGTATGAACATGAAAAAGATTTGCAGCATCTACGGCCTAGCTGTACATCCCTCTTGAATCATCTGCGCATCTATATCCCCGAGGTAATAACTTAATTTAACACTGTTTTCACTGACAAAAGGATGATCTTGAGCATGGACATTTAATGAATAATTGATTTTTTAATATAATTTCATGGGTTCACAGCTTTTCCCAGACCTGAACAAGATTGTATTTTTGGACGATGATACTGTAGTACAGCATGATTTATCGTCTCTGTGGGAACTTGATCTCAACGGGAAAGTTGTTGGTGCAGCTTTTGACTCGAGTTGTGGAGATGACTGTTGCCCTGGAAGAAAGTACAAGGATTACTTTAATTTTACGAGTCCTATTATATCATCTAAGTTGGATTATGATCGTTGCGGATGGCTTTATGGAATGAATGTCTTTGATCTCCAGGCTTGGAGGAAGACTAACATCACTGCAACTTACCATCACTGGCTTAAACTTGTAAGTATAGTTCAACCCGAATTAGTTAATCAAAACTATAAACTGCATTGTCATTCGTTCTAAATGCCTATTTGTTACATGATCTCATCAATAGTCGAGAAGTGCTTTATGCGTAGCTGCTGCTGCAGAATATATCAAGTTGAGCATTCTTGCCTCTGATGCCCCAACATTTCCGTATTACACCCTGACATGCTCCATTTTAGTCCCACCATATTAAGAAAGAATTGTCATTGCTGGTTAGTAAGATGACAGTTCAGAAATAAATGATTGATACGCTCAGGCTTGTCTCCACATAGATTACATCTAGAGCACAACTGGAATCCTCTTCCCCATAATGTTTCAAGTCAATTATCATGTGAAATTACACCATAATTTGTTAGCTTTACTTCTCAAACAAAAAAGGAACAATCAATCTAATGGAATTCTAGTGTTTTTTGTCGCATTTATTTGTTTAAGCAGCTTCTTTAGTAGTGTTTGAGGATGTTCTGACATTGACCTCTCTTAATTCTATCTTACAGAACCTGAACTCTGGTTTCGAATTGTGGAATCCTGGAGCACTTCCGCCTTCTCTAATTGCTTTTGAGGGTCATGTGCACCGGATTGATGCTTCATGGCACATTGCTGGTTTAGGTTATCGATCCATTATTGATGTCACACAATCTGCACTGGAAGATGGAGCAGTTGTACATTTCAGTGGACCAGCCAAGCCATGGCTTGAGATTGGGGCCCCTG</genome_strand>
        <mrna_strand>TAGAGATTCATAGATTGATCTGTAGTCACAAGCTTGACAGCATGAAAAGGGAAAATATTCCAAACAAGTATGAACATGAAAAAGATTTGCAGCATCTACGGCCTAGCTGTACATCCCTCTTGAATCATCTGCGCATCTATATCCCCGAG.......................................................................................................CTTTTCCCAGACCTGAACAAGATTGTATTTTTGGACGATGATACTGTAGTACAGCATGATTTATCGTCTCTGTGGGAACTTGATCTCAACGGGAAAGTTGTTGGTGCAGCTTTTGACTCGAGTTGTGGAGATGACTGTTGCCCTGGAAGAAAGTACAAGGATTACTTTAATTTTACGAGTCCTATTATATCATCTAAGTTGGATTATGATCGTTGCGGATGGCTTTATGGAATGAATGTCTTTGATCTCCAGGCTTGGAGGAAGACTAACATCACTGCAACTTACCATCACTGGCTTAAACTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGAACTCTGGTTTCGAATTGTGGAATCCTGGAGCACTTCCGCCTTCTCTAATTGCTTTTGAGGGTCATGTGCACCGGATTGATGCTTCATGGCACATTGCTGGTTTAGGTTATCGATCCATTATTGATGTCACACAATCTGCACTGGAAGATGGAGCAGTTGTACATTTCAGTGGACCAGCCCAGCCATGGCTTGAGAATGGGGCCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274133" ref_strand="+" ref_description="SGN-E274133 [cLEN-8-A18]">
      <seq>ttgacagcatgaaaagggaaaatattccaaacaagtatgaacatgaaaaagatttgcagcatctacggcctagctgtacatccctcttgaatcatctgcgcatctatatccccgagcttttcccagacctgaacaagattgtatttttggacgatgatactgtagtacagcatgatttatcgtctctgtgggaacttgatctcaacgggaaagttgttggtgcagcttttgactcgagttgtggagatgactgttgccctggaagaaagtacaaggattactttaattttacgagtcctattatatcatctaagttggattatgatcgttgcggatggctttatggaatgaatgtctttgatctccacgcttggaggaagactaacatcactgcaacttaccatcactggcttaaacttaacctgaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="8402" stop="7281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8102" g_stop="7987" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7986" i_stop="7884" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7883" g_stop="7581" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="419" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E274133" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8102" e_stop="7987"/>
          <exon e_start="7883" e_stop="7581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACAGCATGAAAAGGGAAAATATTCCAAACAAGTATGAACATGAAAAAGATTTGCAGCATCTACGGCCTAGCTGTACATCCCTCTTGAATCATCTGCGCATCTATATCCCCGAGGTAATAACTTAATTTAACACTGTTTTCACTGACAAAAGGATGATCTTGAGCATGGACATTTAATGAATAATTGATTTTTTAATATAATTTCATGGGTTCACAGCTTTTCCCAGACCTGAACAAGATTGTATTTTTGGACGATGATACTGTAGTACAGCATGATTTATCGTCTCTGTGGGAACTTGATCTCAACGGGAAAGTTGTTGGTGCAGCTTTTGACTCGAGTTGTGGAGATGACTGTTGCCCTGGAAGAAAGTACAAGGATTACTTTAATTTTACGAGTCCTATTATATCATCTAAGTTGGATTATGATCGTTGCGGATGGCTTTATGGAATGAATGTCTTTGATCTCCAGGCTTGGAGGAAGACTAACATCACTGCAACTTACCATCACTGGCTTAAACTT</genome_strand>
        <mrna_strand>TTGACAGCATGAAAAGGGAAAATATTCCAAACAAGTATGAACATGAAAAAGATTTGCAGCATCTACGGCCTAGCTGTACATCCCTCTTGAATCATCTGCGCATCTATATCCCCGAG.......................................................................................................CTTTTCCCAGACCTGAACAAGATTGTATTTTTGGACGATGATACTGTAGTACAGCATGATTTATCGTCTCTGTGGGAACTTGATCTCAACGGGAAAGTTGTTGGTGCAGCTTTTGACTCGAGTTGTGGAGATGACTGTTGCCCTGGAAGAAAGTACAAGGATTACTTTAATTTTACGAGTCCTATTATATCATCTAAGTTGGATTATGATCGTTGCGGATGGCTTTATGGAATGAATGTCTTTGATCTCCACGCTTGGAGGAAGACTAACATCACTGCAACTTACCATCACTGGCTTAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346972" ref_strand="+" ref_description="SGN-E346972 [cTOF-25-I7]">
      <seq>aaatggacaagacatcaaggctttcgctttcaaaactaaagctatgataataaagatggagcaaatggtagaatcagcaaggcaaagtgagtctattttttggcacttagcttctcacggtgtaccaaagggcatacattgcctatccctcaagttagctgaagaatatgctgaaaatgctgctgcacgttctcgcttgccttcaccccaatatgtttcccacctcattgacccttccttccatcatgtagttcttttaacggacaatgtgcttgctgcgtctgttgtagtttcctcaaccattaaaagctccagtaacccagaaagattggtgtttcatatagttactgataagaagacatacacagcaatgcatgcatggtttgctgtaaactctgttaattcggctgtcttggaagtaagaggattgcatcagtatgattggtctcatgaagtgaatattgggattaaggagatgatagagattcatagattgatctgtagtcacaagcttgacagcatgaaaagggaaaatattccaaacaagtatgaacatgaaaaagatttgcagcatctacggcctagctgtacatccctcttgaatcatctgcgcatctatatccccgagcttttcccagacctgaacaagattgttattttggacgatgatactgtagtacagcatgatttatcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="10795" stop="7516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10495" g_stop="10450" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10449" i_stop="8569" i_length="1881">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8568" g_stop="7987" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="628" r_length="582" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7986" i_stop="7884" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7883" g_stop="7816" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="696" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E346972" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10495" e_stop="10450"/>
          <exon e_start="8568" e_stop="7987"/>
          <exon e_start="7883" e_stop="7816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGACAAGACATCAAGGCTTTCGCTTTCAAAACTAAAGCTATGGTAAGAAGTAACCCCTTTACTTCACTGTACTGTGCTTCCCATTTTATCATTCTTGCAGGATCTATTTACTGTTTACTTTTTTTAAAATTAGTATGCATTAATTATACACAATCAATCATACACATATTATACATTCGCAATCGCCAGCTAATTTAGGTTATCTTATTAATGAGCTGCAGTCATATAATAAATTCTCATATACCTAAGTTGTCTTTTAGTTTCTACTATTATTTAGCTGAGAATAATTTTTTAAAATTTTATCACTTCCTCTTTGGTTTGAGAATCTTGAATTAGAAAAAGCACAAGTAGGCCACTTAGTCACATGAATAATCAGACAGCTGGTCTGTGATGCTCCATCACTCAAGCATTGGTGCGTGTTTCTGTTTTGGAATGCGTAATGGACCCACTTGTTGGTGCTCCATGTAAAAGAAATTCTTTTACCTAACAATAATAAGTGGGAATGTCAATCATATATTGCAAATGCTCAGTAGTTACAACTTTATAAGACAGCTATATTAAGCAATCAAATTATTTCTAACAGTAGTGTAAAATTCTCAAATTACTAATAGGAGTAGATATTATCTTTCAAGCCAAGAAAAGTAAGCAGATTATTATGAGATTGAAAGAAGATTAACCTTAGAATCTCTTAGTCATGACTAGGCAATACCTGACGCAGTGTTTCACTGGTCACTGAGATGGGAGAACCATGAGGTTTCAGGGTTAAATCTTAGTAAAGGCAAAAAATACTACTCCAAGTTCCTCCTATTGGCCTATGTTTTTGATGGAATAGTTGAGGTGTGTGTAATCTAGCACAGGCACCTTCATAAAATATGTTTATGGTTACGCAATGAAGATGCTGCTTATCTTTTTTTATGTAGTGATTTCTTTTACTATAGCTGGTTCTATTTGTCTAATGAATTTAAAAGTTAATTAGATTTTGCAAGCAAAATATTTCACATAGATGGGAACTTCACTAATAGATACTGCTTTCCACCATCCTGGAAGGGGCGGTCTACTGATTTCCATCTTTTATTAAAGCCAAATTTCAAGATTTCATTGTTTATGTAGACTCAGCCACATGTTACCACAGCGACTTATATTAACAAAATTACATATTCTTAAGGGCTGGTTACCCCGAGTATATATCTGGAAGCTGAATTTGGAATGAGAATTCCAAGGCTTTCTTTACCTGTGAAAGAATAGGTATCTTTCTAGAAGATTGCTGGCTGTTTGGACCCAAAACTATCTGAGCCTGTTTTTGGTAATGGATTAAGTATAACGAACTAGAAATAGAGTCAATTTTGGATGGACAGATGGAGTTCACACCCTGATGTCTGCAAGCAATATCCACTGATTTATAGGACTAATAGAGGAAAGAAAAGAGACGAATTGGTCATCAACCTGAAATCAAATTGCGTTTAGGCTCTTCTCTCTAATACCATTTGAACAATTCCATTTAAGATGTTAGAAAAACTCCATTTTGGTGCTGCAGCTGCAGTATCAAGACTTATTTCTAACAGCGTAATACCAAGGGAAAGCTACATCATATGATCATCATCCATAAGATATCAACCTGAGGGAGGGTCTCCGAAATTCCCTGCATGGCATAGCCTCATGTGCCAACAGGGCATGTTTGTCGACAGTTAGATTGCATATTTTTTATTTCAATATCAGTTGTACATTTAAAGAATAACTCTATACTGAACTTAAAGTGACATTTTAAAAATAGCAATAAGTTTATTAACTTTAAGTGACATGATTTCTTTTTGTAACTCCTTGCAAATTTCTTGACTACAGAATACATCATGGCAATTAAAATGGACCAATGTTTAATTGTTATTAACTTTTGAATTGAAGTATATGTTTCTTACCTTTGTTTAGATAATAAAGATGGAGCAAATGGTAGAATCAGCAAGGCAAAGTGAGTCTATTTTTTGGCACTTAGCTTCTCACGGTGTACCAAAGGGCATACATTGCCTATCCCTCAAGTTAGCTGAAGAATATGCTGAAAATGCTGCTGCACGTTCTCGCTTGCCTTCACCCCAATATGTTTCCCACCTCATTGACCCTTCCTTCCATCATGTAGTTCTTTTAACGGACAATGTGCTTGCTGCGTCTGTTGTAGTTTCCTCAACCATTAAAAGCTCCAGTAACCCAGAAAGATTGGTGTTTCATATAGTTACTGATAAGAAGACATACACAGCAATGCATGCATGGTTTGCTGTAAACTCTGTTAATTCGGCTGTCTTGGAAGTAAGAGGATTGCATCAGTATGATTGGTCTCATGAAGTGAATATTGGGATTAAGGAGATGATAGAGATTCATAGATTGATCTGTAGTCACAAGCTTGACAGCATGAAAAGGGAAAATATTCCAAACAAGTATGAACATGAAAAAGATTTGCAGCATCTACGGCCTAGCTGTACATCCCTCTTGAATCATCTGCGCATCTATATCCCCGAGGTAATAACTTAATTTAACACTGTTTTCACTGACAAAAGGATGATCTTGAGCATGGACATTTAATGAATAATTGATTTTTTAATATAATTTCATGGGTTCACAGCTTTTCCCAGACCTGAACAAGATTGTATTTTTGGACGATGATACTGTAGTACAGCATGATTTATCGTC</genome_strand>
        <mrna_strand>AAATGGACAAGACATCAAGGCTTTCGCTTTCAAAACTAAAGCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAAAGATGGAGCAAATGGTAGAATCAGCAAGGCAAAGTGAGTCTATTTTTTGGCACTTAGCTTCTCACGGTGTACCAAAGGGCATACATTGCCTATCCCTCAAGTTAGCTGAAGAATATGCTGAAAATGCTGCTGCACGTTCTCGCTTGCCTTCACCCCAATATGTTTCCCACCTCATTGACCCTTCCTTCCATCATGTAGTTCTTTTAACGGACAATGTGCTTGCTGCGTCTGTTGTAGTTTCCTCAACCATTAAAAGCTCCAGTAACCCAGAAAGATTGGTGTTTCATATAGTTACTGATAAGAAGACATACACAGCAATGCATGCATGGTTTGCTGTAAACTCTGTTAATTCGGCTGTCTTGGAAGTAAGAGGATTGCATCAGTATGATTGGTCTCATGAAGTGAATATTGGGATTAAGGAGATGATAGAGATTCATAGATTGATCTGTAGTCACAAGCTTGACAGCATGAAAAGGGAAAATATTCCAAACAAGTATGAACATGAAAAAGATTTGCAGCATCTACGGCCTAGCTGTACATCCCTCTTGAATCATCTGCGCATCTATATCCCCGAG.......................................................................................................CTTTTCCCAGACCTGAACAAGATTGTTATTTTGGACGATGATACTGTAGTACAGCATGATTTATCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255514" ref_strand="+" ref_description="SGN-E255514 [cLEG-30-J13]">
      <seq>tcggcgggagtgactcaactctgatcagagaagagttgatgcgcgcattgttggaggcaacaaatgatggtgacaatggaaaagagaggagctcaacttcattaccatcctcattcaatgatcttgtgaaggacatgacttcaaatggacaagacatcaaggctttcgctttcaaaactaaagctatgataataaagatggagcaaatggtagaatcagcaaggcaaagtgagtctattttttggcacttagcttctcacggtgtaccaaagggcatacattgcctatccctcaagttagctgaagaatatgctgaaaatgctgctgcacgttctcgcttgccttcaccccaatatgtttcccacctcattgacccttccttccatcatgtagttcttttaacggacaatgtgcttgctgcgtctgttgtagtttcctcaaccattaaaagctccagtaacccagaaagattggtgtttcatatagttactgataagaagacatacacagcactgcatgcatggttagctgtaaactctgtcaattcggctgtcttggaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="12458" stop="7894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12158" g_stop="12136" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12135" i_stop="10615" i_length="1521">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10614" g_stop="10450" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="188" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10449" i_stop="8569" i_length="1881">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8568" g_stop="8194" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="563" r_length="375" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E255514" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12158" e_stop="12136"/>
          <exon e_start="10614" e_stop="10450"/>
          <exon e_start="8568" e_stop="8194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCGGGAGTGACTCAACTCTGGTAAATCATTTTTTAAATGAATTAACGCAAATTTTACTCATTGACATGTATCTTTGTGGCTATTAAATATTCAAAAATTTAGGTGAAACAAATTTTTTATTTTTACCATTTTGCAATCTATCCACGTGGGAGCACCTTCACAATTTGGATCAAAAATTGCTTTTTAGAGTACCTTTTTATTACAGTTAAAATTGTACCCATACTTTGGAATATAAGTTTTTTACTCATCCATATTGACAGACAAATTTAATCGTCAAAAAGTAAATTTTTGTCTTCAATTTTTTCCGTCATAAATATTTCTTTCGTTTCATAAAGAATGACGTAGTTTGATTTGACACAAAATTTAAGAGTACATATTTGACTAATGATTCTTTTTTTTACTTCTCCAAAATTAAGCTTCAAAAATTACATTTAATCATAAAATTTCAAAATTTAACTTTGAAGTTGAATTTTGAAACAACTCTGAGTAAAAAAAAGAAAAGAAAAGAAAGTTTCTATATGATTACCACTTGATTCTCAAAATTGCATAGGATGAATATTTCTATATCACTCTTTTTTTGGTTGGATTCCGCCACGTAAGACTTATTAAGCACAAAGATGTATCAATATTTTTTAAAATATCCTTTTTTTTAAGTTTAAATCGAAATTTCTAGTTAGTCATAATAAAATTTTATCCATTTCATTATAATATATATGGTCACTTCCTATAAACCCATACATTTCTAGGATATTAGTGAATAGTAGTAGCTGCTGCCTTGGTTATTTCAGGCAAAAATAGTAAATAGAAAAAACAGGTACTTTCCCCATACCTACTAAATATATTACGTACAACTCAAGCATATTCTCTACTTATAGTTCCAAGGGTAACGCAATTAAAGGAACTGTCGGTAATTGACATCCACTTGTTGGTTTTTGTAATACATGGTCACTAGTAAACCACAATATGATTCATATGTAATACTATCATTCTGACTAGGGCTAAGTAATGTTGTTTTCATTTCTATTCTAGACTTTACTAGTCCCACTTGTTATATAGTATTATTTGTAATACTAGAGCTAGACCATAGTGTAGCAAAGATAATAAAGTGCTGCACCTTACTTCCGTATAAGTCAAAATTGCTCTTGAAAAAAAGGACTTTCATCTGGATATATGCCCACTTGACTTTATTATTTAAAAGATTGGTTGGCCTTTCTTATCGTTGCATGTCCACATCGATATTGAGTATTGATAAATGATAGACTTAGACAAACAATAACTATACATGATACTATCTTTACATACATTATATATTAGTATTACTTACAACGATTAATTAATACATATTTTTATACTTCCTCTGTCTAATTTGACCTGATGCAAAACTTAAAAACAAAAGAAATTTTTTTAAAACTTGTGATAAAAAAATAAGCAGTAGATGTAAACATCATACATAGTTCAAATTTTTCGTACTCTCAGTATTTATTGTTACCAAGTATTTCTGATGCTAACTTTTCTTCCTTTTTGACCATACGGTGAAAAAGATCAGAGAAGAGTTGATGCGCGCATTGTTGGAGGCAACAAATGATGGTGACAATGGAAAAGAGAGGAGCTCAACTTCATTACCATCCTCATTCAATGATCTTGTGAAGGACATGACTTCAAATGGACAAGACATCAAGGCTTTCGCTTTCAAAACTAAAGCTATGGTAAGAAGTAACCCCTTTACTTCACTGTACTGTGCTTCCCATTTTATCATTCTTGCAGGATCTATTTACTGTTTACTTTTTTTAAAATTAGTATGCATTAATTATACACAATCAATCATACACATATTATACATTCGCAATCGCCAGCTAATTTAGGTTATCTTATTAATGAGCTGCAGTCATATAATAAATTCTCATATACCTAAGTTGTCTTTTAGTTTCTACTATTATTTAGCTGAGAATAATTTTTTAAAATTTTATCACTTCCTCTTTGGTTTGAGAATCTTGAATTAGAAAAAGCACAAGTAGGCCACTTAGTCACATGAATAATCAGACAGCTGGTCTGTGATGCTCCATCACTCAAGCATTGGTGCGTGTTTCTGTTTTGGAATGCGTAATGGACCCACTTGTTGGTGCTCCATGTAAAAGAAATTCTTTTACCTAACAATAATAAGTGGGAATGTCAATCATATATTGCAAATGCTCAGTAGTTACAACTTTATAAGACAGCTATATTAAGCAATCAAATTATTTCTAACAGTAGTGTAAAATTCTCAAATTACTAATAGGAGTAGATATTATCTTTCAAGCCAAGAAAAGTAAGCAGATTATTATGAGATTGAAAGAAGATTAACCTTAGAATCTCTTAGTCATGACTAGGCAATACCTGACGCAGTGTTTCACTGGTCACTGAGATGGGAGAACCATGAGGTTTCAGGGTTAAATCTTAGTAAAGGCAAAAAATACTACTCCAAGTTCCTCCTATTGGCCTATGTTTTTGATGGAATAGTTGAGGTGTGTGTAATCTAGCACAGGCACCTTCATAAAATATGTTTATGGTTACGCAATGAAGATGCTGCTTATCTTTTTTTATGTAGTGATTTCTTTTACTATAGCTGGTTCTATTTGTCTAATGAATTTAAAAGTTAATTAGATTTTGCAAGCAAAATATTTCACATAGATGGGAACTTCACTAATAGATACTGCTTTCCACCATCCTGGAAGGGGCGGTCTACTGATTTCCATCTTTTATTAAAGCCAAATTTCAAGATTTCATTGTTTATGTAGACTCAGCCACATGTTACCACAGCGACTTATATTAACAAAATTACATATTCTTAAGGGCTGGTTACCCCGAGTATATATCTGGAAGCTGAATTTGGAATGAGAATTCCAAGGCTTTCTTTACCTGTGAAAGAATAGGTATCTTTCTAGAAGATTGCTGGCTGTTTGGACCCAAAACTATCTGAGCCTGTTTTTGGTAATGGATTAAGTATAACGAACTAGAAATAGAGTCAATTTTGGATGGACAGATGGAGTTCACACCCTGATGTCTGCAAGCAATATCCACTGATTTATAGGACTAATAGAGGAAAGAAAAGAGACGAATTGGTCATCAACCTGAAATCAAATTGCGTTTAGGCTCTTCTCTCTAATACCATTTGAACAATTCCATTTAAGATGTTAGAAAAACTCCATTTTGGTGCTGCAGCTGCAGTATCAAGACTTATTTCTAACAGCGTAATACCAAGGGAAAGCTACATCATATGATCATCATCCATAAGATATCAACCTGAGGGAGGGTCTCCGAAATTCCCTGCATGGCATAGCCTCATGTGCCAACAGGGCATGTTTGTCGACAGTTAGATTGCATATTTTTTATTTCAATATCAGTTGTACATTTAAAGAATAACTCTATACTGAACTTAAAGTGACATTTTAAAAATAGCAATAAGTTTATTAACTTTAAGTGACATGATTTCTTTTTGTAACTCCTTGCAAATTTCTTGACTACAGAATACATCATGGCAATTAAAATGGACCAATGTTTAATTGTTATTAACTTTTGAATTGAAGTATATGTTTCTTACCTTTGTTTAGATAATAAAGATGGAGCAAATGGTAGAATCAGCAAGGCAAAGTGAGTCTATTTTTTGGCACTTAGCTTCTCACGGTGTACCAAAGGGCATACATTGCCTATCCCTCAAGTTAGCTGAAGAATATGCTGAAAATGCTGCTGCACGTTCTCGCTTGCCTTCACCCCAATATGTTTCCCACCTCATTGACCCTTCCTTCCATCATGTAGTTCTTTTAACGGACAATGTGCTTGCTGCGTCTGTTGTAGTTTCCTCAACCATTAAAAGCTCCAGTAACCCAGAAAGATTGGTGTTTCATATAGTTACTGATAAGAAGACATACACAGCAATGCATGCATGGTTTGCTGTAAACTCTGTTAATTCGGCTGTCTTGGAAGTA</genome_strand>
        <mrna_strand>TCGGCGGGAGTGACTCAACTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAGAAGAGTTGATGCGCGCATTGTTGGAGGCAACAAATGATGGTGACAATGGAAAAGAGAGGAGCTCAACTTCATTACCATCCTCATTCAATGATCTTGTGAAGGACATGACTTCAAATGGACAAGACATCAAGGCTTTCGCTTTCAAAACTAAAGCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAAAGATGGAGCAAATGGTAGAATCAGCAAGGCAAAGTGAGTCTATTTTTTGGCACTTAGCTTCTCACGGTGTACCAAAGGGCATACATTGCCTATCCCTCAAGTTAGCTGAAGAATATGCTGAAAATGCTGCTGCACGTTCTCGCTTGCCTTCACCCCAATATGTTTCCCACCTCATTGACCCTTCCTTCCATCATGTAGTTCTTTTAACGGACAATGTGCTTGCTGCGTCTGTTGTAGTTTCCTCAACCATTAAAAGCTCCAGTAACCCAGAAAGATTGGTGTTTCATATAGTTACTGATAAGAAGACATACACAGCACTGCATGCATGGTTAGCTGTAAACTCTGTCAATTCGGCTGTCTTGGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303064" ref_strand="+" ref_description="SGN-E303064 [cLEW-26-H23]">
      <seq>ccttcagcatttaacgcgcctatcagttttggcttttcggctgtgtcgtccccactttaatcttcacacagccaaaagagtgtgatctatagtgaaactaaatatagaaactgaacaatcttcattattaagcttctgaagatttcaacgagctatcagattctgttttaagaggatgagtatgagtgtggagtgaatgagcactcgagcaagcggatctgaagctggaaccgagaagaaatgagattatttgtttggaagaagaagaggaaactgaagttcaatattttgattagatgatgaagttttatatatcggcaacggggattaaaaaactgactatatcgagttccgccgctgttactagcggcagaggtggcgtagggttgccggttattatgaaagggaaaggattaccgtcggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="13428" stop="12128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13128" g_stop="12957" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12956" i_stop="12682" i_length="275">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12681" g_stop="12428" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="426" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E303064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13128" e_stop="12957"/>
          <exon e_start="12681" e_stop="12428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCAGCATTTAACGCGCCTATCAGTTTTGGCTTTTCGGCTTTGTCGTCCCCACTTTAATCTTCACACAGCCAAAAGAGTGTGATCTATAGTGAAACTAAATATAGAAACTGAACAATCTTCATTATTAAGCTTCTGAAGATTTCAACGAGCTATCAGATTCTGTTTTAAGGTAAGTTTTCTGCTTCAATTCAATGCTCTTTCAATTGATTCTAGCTAGTTTGCAATTGATGCTCGCAGTTTTTGTAGTTTTGGATCAATCACTGATTTGAACAATTATTTGAATTTTTTTGATATTGAATTGGTGAGAATGTTGTTGATGAATGATATATGGAGTAAGAGTTACTTAGCGTGCAGTTTGAAATTTCTCCGTACGGATTGAGTTAGTGATTTTCGCTGTTTTGAATTGTTTGTGTGTGCGCTAACGATGTGTATTTGTTGAAGCAGAGGATGAGTATGAGTGTGGAGTGAATGAGCACTCGAGCAAGCGGATCTGAAGCTGGAACCGAGAAGAAATGAGATTATTTGTTTGGAAGAAGAAGAGGAAACTGAAGTTCAATATTTTGATTAGATGATGAAGTTTTATATATCGGCAACGGGGATTAAAAAACTGACTATATCGAGTTCCGCCGCTGTTACTAGCGGCAGAGGTGGCGTAGGGTTGCCGGTTATTATGAAAGGGAAAGGATTACCGTCGGTGA</genome_strand>
        <mrna_strand>CCTTCAGCATTTAACGCGCCTATCAGTTTTGGCTTTTCGGCTGTGTCGTCCCCACTTTAATCTTCACACAGCCAAAAGAGTGTGATCTATAGTGAAACTAAATATAGAAACTGAACAATCTTCATTATTAAGCTTCTGAAGATTTCAACGAGCTATCAGATTCTGTTTTAAG...................................................................................................................................................................................................................................................................................AGGATGAGTATGAGTGTGGAGTGAATGAGCACTCGAGCAAGCGGATCTGAAGCTGGAACCGAGAAGAAATGAGATTATTTGTTTGGAAGAAGAAGAGGAAACTGAAGTTCAATATTTTGATTAGATGATGAAGTTTTATATATCGGCAACGGGGATTAAAAAACTGACTATATCGAGTTCCGCCGCTGTTACTAGCGGCAGAGGTGGCGTAGGGTTGCCGGTTATTATGAAAGGGAAAGGATTACCGTCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542910" ref_strand="+" ref_description="SGN-E542910 [TUS-64-H7]">
      <seq>cccttcagcatttaacgcgcctatcagttttggcttttcggctttgtcgtccccactttaatcttcacacagccaaaagagtgtgatctatagtgaaactaaatatagaaactgaacaatcttcattattaagcttctgaagatttcaacgagctatcagattctgttttaagaggatgagtatgagtgtggagtgaatgagcactcgagcaagcggatctgaagctggaaccgagaagaaatgagattatttgtttggaagaagaagaggaaactgaagttcaatattttgattagatgatgaagttttatatatcggcaacggggattaaaaaactgactatatcgagttccgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="13429" stop="12197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13129" g_stop="12957" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12956" i_stop="12682" i_length="275">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12681" g_stop="12497" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="358" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E542910" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13129" e_stop="12957"/>
          <exon e_start="12681" e_stop="12497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTCAGCATTTAACGCGCCTATCAGTTTTGGCTTTTCGGCTTTGTCGTCCCCACTTTAATCTTCACACAGCCAAAAGAGTGTGATCTATAGTGAAACTAAATATAGAAACTGAACAATCTTCATTATTAAGCTTCTGAAGATTTCAACGAGCTATCAGATTCTGTTTTAAGGTAAGTTTTCTGCTTCAATTCAATGCTCTTTCAATTGATTCTAGCTAGTTTGCAATTGATGCTCGCAGTTTTTGTAGTTTTGGATCAATCACTGATTTGAACAATTATTTGAATTTTTTTGATATTGAATTGGTGAGAATGTTGTTGATGAATGATATATGGAGTAAGAGTTACTTAGCGTGCAGTTTGAAATTTCTCCGTACGGATTGAGTTAGTGATTTTCGCTGTTTTGAATTGTTTGTGTGTGCGCTAACGATGTGTATTTGTTGAAGCAGAGGATGAGTATGAGTGTGGAGTGAATGAGCACTCGAGCAAGCGGATCTGAAGCTGGAACCGAGAAGAAATGAGATTATTTGTTTGGAAGAAGAAGAGGAAACTGAAGTTCAATATTTTGATTAGATGATGAAGTTTTATATATCGGCAACGGGGATTAAAAAACTGACTATATCGAGTTCCGCCG</genome_strand>
        <mrna_strand>CCCTTCAGCATTTAACGCGCCTATCAGTTTTGGCTTTTCGGCTTTGTCGTCCCCACTTTAATCTTCACACAGCCAAAAGAGTGTGATCTATAGTGAAACTAAATATAGAAACTGAACAATCTTCATTATTAAGCTTCTGAAGATTTCAACGAGCTATCAGATTCTGTTTTAAG...................................................................................................................................................................................................................................................................................AGGATGAGTATGAGTGTGGAGTGAATGAGCACTCGAGCAAGCGGATCTGAAGCTGGAACCGAGAAGAAATGAGATTATTTGTTTGGAAGAAGAAGAGGAAACTGAAGTTCAATATTTTGATTAGATGATGAAGTTTTATATATCGGCAACGGGGATTAAAAAACTGACTATATCGAGTTCCGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310314" ref_strand="+" ref_description="SGN-E310314 [cTOA-1-E21]">
      <seq>ttcccttcagcatttaacgcgcctatcagttttggcttttcggctttgtcgtccccactttaatcttcacacagccaaaagagtgtgatctatagtgaaactaaatatagaaactgaacaatcttcattattaagcttctgaagatttcaacgagctatcagattctgttttaagaggatgagtatgagtgtggagtgaatgagcactcgagcaagcggatctgaagctggaaccgagaagaaatgagattatttgtttggaagaagaagaggaaactgaagttcaatattttgattagatgatgaagttttatatatcggcgacggggattaaaaaactgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="13431" stop="12212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13131" g_stop="12957" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12956" i_stop="12682" i_length="275">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12681" g_stop="12512" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="345" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E310314" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13131" e_stop="12957"/>
          <exon e_start="12681" e_stop="12512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTTCAGCATTTAACGCGCCTATCAGTTTTGGCTTTTCGGCTTTGTCGTCCCCACTTTAATCTTCACACAGCCAAAAGAGTGTGATCTATAGTGAAACTAAATATAGAAACTGAACAATCTTCATTATTAAGCTTCTGAAGATTTCAACGAGCTATCAGATTCTGTTTTAAGGTAAGTTTTCTGCTTCAATTCAATGCTCTTTCAATTGATTCTAGCTAGTTTGCAATTGATGCTCGCAGTTTTTGTAGTTTTGGATCAATCACTGATTTGAACAATTATTTGAATTTTTTTGATATTGAATTGGTGAGAATGTTGTTGATGAATGATATATGGAGTAAGAGTTACTTAGCGTGCAGTTTGAAATTTCTCCGTACGGATTGAGTTAGTGATTTTCGCTGTTTTGAATTGTTTGTGTGTGCGCTAACGATGTGTATTTGTTGAAGCAGAGGATGAGTATGAGTGTGGAGTGAATGAGCACTCGAGCAAGCGGATCTGAAGCTGGAACCGAGAAGAAATGAGATTATTTGTTTGGAAGAAGAAGAGGAAACTGAAGTTCAATATTTTGATTAGATGATGAAGTTTTATATATCGGCAACGGGGATTAAAAAACTGACTA</genome_strand>
        <mrna_strand>TTCCCTTCAGCATTTAACGCGCCTATCAGTTTTGGCTTTTCGGCTTTGTCGTCCCCACTTTAATCTTCACACAGCCAAAAGAGTGTGATCTATAGTGAAACTAAATATAGAAACTGAACAATCTTCATTATTAAGCTTCTGAAGATTTCAACGAGCTATCAGATTCTGTTTTAAG...................................................................................................................................................................................................................................................................................AGGATGAGTATGAGTGTGGAGTGAATGAGCACTCGAGCAAGCGGATCTGAAGCTGGAACCGAGAAGAAATGAGATTATTTGTTTGGAAGAAGAAGAGGAAACTGAAGTTCAATATTTTGATTAGATGATGAAGTTTTATATATCGGCGACGGGGATTAAAAAACTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211790" ref_strand="+" ref_description="SGN-E211790 [cLEC-66-B17]">
      <seq>acagtcgtaaaatcttctggaatacaattgattttgatctattaggtgttttgagacgtcaaaagataaacgcttgaaggaatgttcaaacgcgaaaacaggatgctgaagcaaagaaataatgcccagagtatacaaatgcctgttattactatgttttttgttttgatttgtgttctagtttgggttttgtgtagggaaactggagaaaaatctgattcgttgtctggtttagttaaggaaaatttgagtagttttagcttttcggttaagttagacccgactgtggagttcagaaatgaaacagatttaatatggcaaataccggactcacccaaggcaattctgtttctggcacatggttgtaatggtaaagcggcgaacttttgggacagatcacctaagtgtccgaattgtgtgggtttacctgaagaaaggcttatcgtccttaatgccttagctaggagatttgctgttcttgcggtgtctagtgctgggaggtgctggtcgatcgaacaagaaaggttgatcgttatagatattatcgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="18865" stop="20365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19165" g_stop="19243" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19244" i_stop="19593" i_length="350">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19594" g_stop="20065" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="551" r_length="472" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E211790" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19165" e_stop="19243"/>
          <exon e_start="19594" e_stop="20065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTCGTAAAATCTTCTGGAATACAATTGATTTTGATCTATTAGGTGTTTTGAGACGTCAAAAGATAAACGCTTGAAGGTAATTTGCAATAACTCGCTTCATAGTATTGATTCACGTTGTAATTTGGTGTTCAGAATTGTAGTTATCGGGCTTTTGTTTAAATATTTTTGATTATTTGTGATTTTTGATCTCTGTATTTCAACAAAAGATGTTATAACTTTTAATTAAATCGTATGTTTAGGATGTGATTCTATTTGATTGAACGAAAAATCTGATTCAAGGAAATTATGCTGAAAAATTTATAGGGTTTTTAACTTTTTATTGGGATTATTGTTCTCTTTGTGTACTCAAAACTGTAATTTTGGTTTATTTTTAAATGTGCACTGCTGTTATAGAGTAATGATCCTATTGAATTGATTGTTTTCTAGGAATGTTCAAACGCGAAAACAGGATGCTGAAGCAAAGAAATAATGCCCAGAGTATACAAATGCCTGTTATTACTATGTTTTTTGTTTTGATTTGTGTTCTAGTTTGGGTTTTGTGTAGGGAAACTGGAGAAAAATCTGATTCGTTGTCTGGTTTAGTTAAGGAAAATTTGAGTAGTTTTAGCTTTTCGGTTAAGTTAGACCCGACTGTGGAGTTCAGAAATGAAACAGATTTAATATGGCAAATACCGGACTCACCCAAGGCAATTCTGTTTCTGGCACATGGTTGTAATGGTAAAGCGGCGAACTTTTGGGACAGATCACCTAAGTGTCCGAATTGTGTGGGTTTACCTGAAGAAAGGCTTATCGTCCTTAATGCCTTAGCTAGGAGATTTGCTGTTCTTGCGGTGTCTAGTGCTGGGAGGTGCTGGTCGATCGAAGAGGAAAGGTTGATCGTTAAAGATATTATCGAATG</genome_strand>
        <mrna_strand>ACAGTCGTAAAATCTTCTGGAATACAATTGATTTTGATCTATTAGGTGTTTTGAGACGTCAAAAGATAAACGCTTGAAG..............................................................................................................................................................................................................................................................................................................................................................GAATGTTCAAACGCGAAAACAGGATGCTGAAGCAAAGAAATAATGCCCAGAGTATACAAATGCCTGTTATTACTATGTTTTTTGTTTTGATTTGTGTTCTAGTTTGGGTTTTGTGTAGGGAAACTGGAGAAAAATCTGATTCGTTGTCTGGTTTAGTTAAGGAAAATTTGAGTAGTTTTAGCTTTTCGGTTAAGTTAGACCCGACTGTGGAGTTCAGAAATGAAACAGATTTAATATGGCAAATACCGGACTCACCCAAGGCAATTCTGTTTCTGGCACATGGTTGTAATGGTAAAGCGGCGAACTTTTGGGACAGATCACCTAAGTGTCCGAATTGTGTGGGTTTACCTGAAGAAAGGCTTATCGTCCTTAATGCCTTAGCTAGGAGATTTGCTGTTCTTGCGGTGTCTAGTGCTGGGAGGTGCTGGTCGATCGAACAAGAAAGGTTGATCGTTATAGATATTATCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341461" ref_strand="+" ref_description="SGN-E341461 [cTOE-23-E12]">
      <seq>tcttctggaatacaattgattttgatctattaggtgttttgagacgtcaaaagataaacgcttgaaggaatgttcaaacgcgaaaacaggatgctgaagcaaagaaataatgcccagagtatacaaatgcctgttattactatgttttttgttttgatttgtgttctagtttgggttttgtgtagggaaactggagaaaaatctgattcgttgtctggtttagttaaggaaaatttgagtagttttagcttttcggttaagttagacccgactgtggagttcagaaatgaaacagatttaatatggcaaataccggactcacccaaggcaattctgtttctggcacatggttgtaatggtaaagcggcgaacttttgggacagatcacctaagtgtccgaattgtgtgggtttacctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="18877" stop="20247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19177" g_stop="19243" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19244" i_stop="19593" i_length="350">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19594" g_stop="19947" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="421" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E341461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19177" e_stop="19243"/>
          <exon e_start="19594" e_stop="19947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTGGAATACAATTGATTTTGATCTATTAGGTGTTTTGAGACGTCAAAAGATAAACGCTTGAAGGTAATTTGCAATAACTCGCTTCATAGTATTGATTCACGTTGTAATTTGGTGTTCAGAATTGTAGTTATCGGGCTTTTGTTTAAATATTTTTGATTATTTGTGATTTTTGATCTCTGTATTTCAACAAAAGATGTTATAACTTTTAATTAAATCGTATGTTTAGGATGTGATTCTATTTGATTGAACGAAAAATCTGATTCAAGGAAATTATGCTGAAAAATTTATAGGGTTTTTAACTTTTTATTGGGATTATTGTTCTCTTTGTGTACTCAAAACTGTAATTTTGGTTTATTTTTAAATGTGCACTGCTGTTATAGAGTAATGATCCTATTGAATTGATTGTTTTCTAGGAATGTTCAAACGCGAAAACAGGATGCTGAAGCAAAGAAATAATGCCCAGAGTATACAAATGCCTGTTATTACTATGTTTTTTGTTTTGATTTGTGTTCTAGTTTGGGTTTTGTGTAGGGAAACTGGAGAAAAATCTGATTCGTTGTCTGGTTTAGTTAAGGAAAATTTGAGTAGTTTTAGCTTTTCGGTTAAGTTAGACCCGACTGTGGAGTTCAGAAATGAAACAGATTTAATATGGCAAATACCGGACTCACCCAAGGCAATTCTGTTTCTGGCACATGGTTGTAATGGTAAAGCGGCGAACTTTTGGGACAGATCACCTAAGTGTCCGAATTGTGTGGGTTTACCTGAAG</genome_strand>
        <mrna_strand>TCTTCTGGAATACAATTGATTTTGATCTATTAGGTGTTTTGAGACGTCAAAAGATAAACGCTTGAAG..............................................................................................................................................................................................................................................................................................................................................................GAATGTTCAAACGCGAAAACAGGATGCTGAAGCAAAGAAATAATGCCCAGAGTATACAAATGCCTGTTATTACTATGTTTTTTGTTTTGATTTGTGTTCTAGTTTGGGTTTTGTGTAGGGAAACTGGAGAAAAATCTGATTCGTTGTCTGGTTTAGTTAAGGAAAATTTGAGTAGTTTTAGCTTTTCGGTTAAGTTAGACCCGACTGTGGAGTTCAGAAATGAAACAGATTTAATATGGCAAATACCGGACTCACCCAAGGCAATTCTGTTTCTGGCACATGGTTGTAATGGTAAAGCGGCGAACTTTTGGGACAGATCACCTAAGTGTCCGAATTGTGTGGGTTTACCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745624" ref_strand="-" ref_description="SGN-E745624 [GI|47105246]">
      <seq>ttttttttttttttttttttttcagaacaacagagataaatagtttgatttcatttttccaatcgtttcaagaacagaggctgtgtttcctttaatgttgagataacaagaagttataggaacttccacttgaaaagttcaatccctaagcacaagaaaatagacctaatttcaattcctttcctctcaaaaaaagaaagtagacctagttcctaagtgtttcactatacacttctttctggatataaaaaaaggaaaatccaaataataacagtaggcagcccttttcacatgtaggaagtttgaatgccgagacaatatttttcaccacaatgtgaccacagttattcccacttggacttcaacctcgtgaaataacatgagcacacaacagtatagagatctgttgtcacccaatccaaagccgtggcaacaatattccacccatgatgactcaaggaagattacacagcataagaatctgatcagctcatatgagtttcaaaccagttaaagatttgctcagactgcaaactggtcatttcatgataagcaaacgcaaggttcatttcttcttgaatgtgatttgctatggacttgtcagggagaataatctctctctctttgagagcttccttccattgtattgtacgcccgtcatttctcatgaaaccttttgtatcaacaaaatccttttcctggaacagactatacaacttcacagaggtagctagatcaagaccaggaatcctatcagataatagattaggtgacaatgcaaactccatgcatttgacctctgcaacatcaatgcctttaccctgcaggagtgtcaagtatctggctattctcacacttctccttttatctttgggcatgtgcacaaaaagagtaggagggtaactcttcggaatgtccattcgatcaaacactccctcagcaatcattattgttatgctactgaatcttaaatcagttgcaaggactgaaacaaaatatccaccagatgaagcacccaaagctacaataggcagactttgaaccttttgtttcacaacccaccattcgataatatctttaacgatcaacctttcctcttcgatcgaccagcacctcccagcactagacaccgcaagaacagcaaatctcctagctaaggcattaaggacgataagcctttcttcaggtaaacccacacaattcggacacttaggtgatctgtcccaaaagttcgccgctttaccattacaaccatgtgccagaaacagaattgccttgggtgagtccggtatttgccatattaaatctgtttcatttctgaactccacagtcgggtctaacttaaccgaaaagctaaaactactcaaattttccttaactaaaccagacaacgaatcagatttttctccagtttccctacacaaaacccaaactagaacacaaatcaaaacaaaaaacatagtaataacaggcatttgtatactctgggcattatttctttgcttcagcatcctgttttcgcgtttgaacattccttcaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="99454" stop="19288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24642" g_stop="24618" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.720"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24617" i_stop="21102" i_length="3516">
            <donor d_prob="0.712" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21101" g_stop="19585" g_length="1517"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="1543" r_length="1518" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E745624" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1542</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745624" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24642" e_stop="24618"/>
          <exon e_start="21101" e_stop="19585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTTTGTTTTATCCTTTAAGGTAATGAAGGTATCTTTCCAAATAAAAATAAAGCATTCTACTTTTGCTTATAAAACAAACTAACCTCAGTAATCAAGAACAAAAAGAGAAACACGAATCCGTTGTCCTACCTCCTTTATTAGTGGAAATGCAACCGATGTGACGAGGCATTGAGCTTCTTCAACAAACTTTACCCCAGGCTCAATTTCTCATAAGGGTGTTGATGACCATCTGCAAGTGTGATTATTATTCAGCGCAGAGCAATGGATCTGAAAATAAAATAAGGCTGTCTTGTAAAGTATGAACACCATTCAATACAGAAAACATGACATGCTTATGAAGAAGTTCATCCCACACATCAATGCTGAACCATACACTTCGCAGCTTTCCTGTCATGGATAATATCAGTAGTTGACATAACTAAAAAAAATTGTTCCATCCATACAACTATTTGGAAAGTAGACGGTAAGCACAATTACAAATACAGCTAGGAAAACATTGGTCTTATCAATCTTGATTCAGGCAGTGCAGATAACAGGATTCATCAGCTGATACATCCAGTTTGTTCTATTTCAGTACTTTTTTATGGCAATATATTTTTATTAAACTTTGTGAACATCTCATCCAAAAAATTAAACTATTAGAGAGTGCACGTGGAAATTACTTTCGATTAAAAGTAATGAGACTCATAGTCAAGAGCTCTACTTTCTCCGATAACATACTAGATTGTATGACTACCACATCTAAAAGTTTATATTGTTGAGAGTTAGCTCAAAGGGAGGAGGATTGTCCAAGCCTTATAAGGAGTCCACCCATCTCATTAATCACCGATGTGGGACTTTTTTCATTTTTTAACACCCCACCTCACGCCTAGTGCTTAGCATCTTCATTCTTTAACACCCCACCTCACGCCTAGTGCTTAACATCTGGTGCGCGGGCAATTTGATTTCGGGGGTCCTAACATCGGGTGAGACGGACCCTGCTCTGATACCATGTGAAATTAGGTCTTAGGCCTAACTCACATCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAGCCTTATAAGGAGTCCACCCATCTCATTAATCACCGATGTGGGACTTTTGTCATTCTTTAACACACTTTTATTTAAATTAATTATGGTTTCAACACTCTCATTGCTTCCAAGAGATTCTTTCCTTCTTAACTGGAGAGATTTTCAGGTAGATAAGACATAAAAGAAAATATCATAAAAGATATGCATATAACATAAAACATTATATCATTATAATACAGGCTGTTAAAACTCGTCGAGAAACCCAAGATAGAGTCAAGAAATAAAAACTATTTGAGATAGGAGCATAACACACATGCTCTCCCATTATCCTCTATAAAGTTACATATCAAATTTTCAGAGAAATCTAGCAATTTGAATTACAAAGTTCCTGAAAAGTCATTGACCTGCATCTATCTAGTCAATGAGGAGTATTTACACGGAAAGTTCCCTCATAAGTCCTAACAAACTGGCACAATAAATTAGTACATCTATAAGCATGTGTATCTCCCAAAAGAACAAGGAATGGTAATCGTTGATAAAGAATGCATATTATTCATATTGTTTTTTGAATGTAAACTTCATAGTTAGGATGTTAATTTTGTTTGTTCAAGTGCATCTATGGTAAAATAAAATGTTAAGGTTCTGAAGGAAAAATGAATTCAGTTGTGTACCAACAGAAGAAAAAAAAGACAGCTCAATGACAGAGAGATGGATGGTTTTGATTATGTGCAGCTGGGCGATAAGAGGTAACACTGTCAGAGCTTTGGCTCACAGCATAGTATGCTTTAAAGAGCAGGTTAATTTATGTAACACCACAATGAATGCAAACCAACCCAACAGCCTATCTTCACAGCACAAACTAGATGCATCATAGAAAAATAATACTAAATGGAGTCTTGGTATGCACCTGAGTTACTTCTCCCTGCTTCAGACTGGCTCAAGCTGTAGGATTATCACTAAGCCAGAAAGGAGAATAAAAATAAACTGAACTCACACCAAATTTGGTTGGTGTAAATATTCTTTAACCATTAAGCTTTTATGAATGTCTTAACACAGATATCTATCTTTAAATAGCACAAGCTTTCTTTGACAATGCAATGCAAGTATATACTCTTTACAATAACTTGTGAATGTTCTACGAACTTCTCTAGCTGACAATTCATAATAATTCTTCATCTGAATGAAGATCTTCAACATAAAAGTCGTGTTTCCATCAGAATTTAGGCACAACTAGTGGATGCATGCTTGTATATCAAAGAAGCACATATTAAGAGGATTTATGTTTCCTAGCTTAAAAGGAGTAGAATGCTTGAGTCGATTTGAAATATCCCACACATGACAGATAAAGAATGGGAGAACATAAAATAGCCTTGAGATGCTTTGAGTGCTGGCGCGTAGCTAGAGAAGCTGTTGTCAGAGTTACGTCCCTATAGCATCACATCAGTAATACAAAGGATGTCTCCTTGAGGAAAATTGCAACACTGACCAGAAACTGTCCATAGATATACTCTGTAGAAAGAGAAAATTAAAGGGTCACATGCAACAAAGAAAATTTGATATGCACCACGGTTGCAGAGCTTTTACCACATTAATTTCCAAGTACTGACCCTATGGGCTTGTATGAAAGGAATCCATTCCAAGTGAAATCTGTACCTTAGCACTAGCATGAATAATTAGGAAAAACTATTGTAGTAATGTCACAACTAAGATATCTGGACTGTCATACAAATCTTGAGAGCTCATCTGATAAATAGTTGACATAGTCTCTTTACCTTATTGAAGGATCATACAATGTACAGATTTCCTTTCTTCAAGGAAACCATCACATAACCTGATCCCCTCCCTCAACATGAGCAAAACCTATATCCCACTGATAGATCTTATACAAGTTCAGCGAATCTGATATCAGTTGAAGCTAATACAACAAAATTCCCTGCATGAGAGAATCCAATATCTATAACAAAATTCTCCACAATTGGTTATTTTATCCAGAATCTTATCTTCCTACTTATATTTTCAATAACCATGGTGTTCGGACCAGCTCAACATGATATGTTGGAATTCAAAAATATTAAATTTACACACCAAGAGAATCTAATTCTAATAAATAACTAAATAGTTTTTATTTTTCCACCATAATGCACCAGAGCAAGAATTGAATCATAAGATGATGATAAATTATTGGTGTCACCAGTAGCCTAAGAAGGCAAAATAATGCAAATGTCTCAAGAGTCATTAGGTCTGGAAGACGCACCCAACTGATACCCTTGGATTATACATCAACCAGATGAACTTTCACTTCATTACTTCCAACAGATGAAGTTCATTCTCATAAAAAATGCTCACTCAATTTCGTTTTGAGACTACATTATTATAATTTATACAGGAAAGAATTTTAAAGACACATGAAAAAGGTATTAGTAATAAACAAGCACCCATGCTGAAGCATAATTAATGCAGGAAATGAATTCCAGTCTGTGCAAAGAAGAAAGATTAGAACAACAGAGATAAATAGTTTGATTTCATTTTTCCAATCGTTTCAAGAACAGAGGCTGTGTTTCCTTTAATGTTGAGATAACAAGAAGTTATAGGAACTTCCACTTGAAAAGTTCAATCCCTAAGCACAAGAAAATAGACCTAATTTCAATTCCTTTCCTCTC-AAAAAAGAAAGTAGACCTAGTTCCTAAGTGTTTCACTATACACTTCTTTCTGGATATAAAAAAAGGAAAATCCAAATAATAACAGTAGGCAGCCCTTTTCACATGTAGGAAGTTTGAATGCCGAGACAATATTTTTCACCACAATGTGACCACAGTTATTCCCACTTGGACTTCAACCTCGTGAAATAACATGAGCACACAACAGTATAGAGATCTGTTGTCACCCAATCCAAAGCCGTGGCAACAATATTCCACCCATGATGACTCAAGGAAGATTACACAGCATAAGAATCTGATCAGCTCATATGAGTTTCAAACCAGTTAAAGATTTGCTCAGACTGCAAACTGGTCATTTCATGATAAGCAAACGCAAGGTTCATTTCTTCTTGAATGTGATTTGCTATGGACTTGTCAGGGAGAATAATCTCTCTCTCTTTGAGAGCTTCCTTCCATTGTATTGTACGCCCGTCATTTCTCATGAAACCTTTTGTATCAACAAAATCCTTTTCCTGGAACAGACTATACAACTTCACAGAGGTAGCTAGATCAAGACCAGGAATCCTATCAGATAATAGATTAGGTGACAATGCAAACTCCATGCATTTGACCTCTGCAACATCAATGCCTTTACCCTGCAGGAGTGTCAAGTATCTGGCTATTCTCACACTTCTCCTTTTATCTTTGGGCATGTGCACAAAAAGAGTAGGAGGGTAACTCTTCGGAATGTCCATTCGATCAAACACTCCCTCAGCAATCATTATTGTTATGCTACTGAATCTTAAATCAGTTGCAAGGACTGAAACAAAATATCCACCAGATGAAGCACCCAAAGCTACAATAGGCAGACTTTGAACCTTTTGTTTCACAACCCACCATTCGATAATATCTTTAACGATCAACCTTTCCTCTTCGATCGACCAGCACCTCCCAGCACTAGACACCGCAAGAACAGCAAATCTCCTAGCTAAGGCATTAAGGACGATAAGCCTTTCTTCAGGTAAACCCACACAATTCGGACACTTAGGTGATCTGTCCCAAAAGTTCGCCGCTTTACCATTACAACCATGTGCCAGAAACAGAATTGCCTTGGGTGAGTCCGGTATTTGCCATATTAAATCTGTTTCATTTCTGAACTCCACAGTCGGGTCTAACTTAACCGAAAAGCTAAAACTACTCAAATTTTCCTTAACTAAACCAGACAACGAATCAGATTTTTCTCCAGTTTCCCTACACAAAACCCAAACTAGAACACAAATCAAAACAAAAAACATAGTAATAACAGGCATTTGTATACTCTGGGCATTATTTCTTTGCTTCAGCATCCTGTTTTCGCGTTTGAACATTCCTAGAAAAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGAGATAAATAGTTTGATTTCATTTTTCCAATCGTTTCAAGAACAGAGGCTGTGTTTCCTTTAATGTTGAGATAACAAGAAGTTATAGGAACTTCCACTTGAAAAGTTCAATCCCTAAGCACAAGAAAATAGACCTAATTTCAATTCCTTTCCTCTCAAAAAAAGAAAGTAGACCTAGTTCCTAAGTGTTTCACTATACACTTCTTTCTGGATATAAAAAAAGGAAAATCCAAATAATAACAGTAGGCAGCCCTTTTCACATGTAGGAAGTTTGAATGCCGAGACAATATTTTTCACCACAATGTGACCACAGTTATTCCCACTTGGACTTCAACCTCGTGAAATAACATGAGCACACAACAGTATAGAGATCTGTTGTCACCCAATCCAAAGCCGTGGCAACAATATTCCACCCATGATGACTCAAGGAAGATTACACAGCATAAGAATCTGATCAGCTCATATGAGTTTCAAACCAGTTAAAGATTTGCTCAGACTGCAAACTGGTCATTTCATGATAAGCAAACGCAAGGTTCATTTCTTCTTGAATGTGATTTGCTATGGACTTGTCAGGGAGAATAATCTCTCTCTCTTTGAGAGCTTCCTTCCATTGTATTGTACGCCCGTCATTTCTCATGAAACCTTTTGTATCAACAAAATCCTTTTCCTGGAACAGACTATACAACTTCACAGAGGTAGCTAGATCAAGACCAGGAATCCTATCAGATAATAGATTAGGTGACAATGCAAACTCCATGCATTTGACCTCTGCAACATCAATGCCTTTACCCTGCAGGAGTGTCAAGTATCTGGCTATTCTCACACTTCTCCTTTTATCTTTGGGCATGTGCACAAAAAGAGTAGGAGGGTAACTCTTCGGAATGTCCATTCGATCAAACACTCCCTCAGCAATCATTATTGTTATGCTACTGAATCTTAAATCAGTTGCAAGGACTGAAACAAAATATCCACCAGATGAAGCACCCAAAGCTACAATAGGCAGACTTTGAACCTTTTGTTTCACAACCCACCATTCGATAATATCTTTAACGATCAACCTTTCCTCTTCGATCGACCAGCACCTCCCAGCACTAGACACCGCAAGAACAGCAAATCTCCTAGCTAAGGCATTAAGGACGATAAGCCTTTCTTCAGGTAAACCCACACAATTCGGACACTTAGGTGATCTGTCCCAAAAGTTCGCCGCTTTACCATTACAACCATGTGCCAGAAACAGAATTGCCTTGGGTGAGTCCGGTATTTGCCATATTAAATCTGTTTCATTTCTGAACTCCACAGTCGGGTCTAACTTAACCGAAAAGCTAAAACTACTCAAATTTTCCTTAACTAAACCAGACAACGAATCAGATTTTTCTCCAGTTTCCCTACACAAAACCCAAACTAGAACACAAATCAAAACAAAAAACATAGTAATAACAGGCATTTGTATACTCTGGGCATTATTTCTTTGCTTCAGCATCCTGTTTTCGCGTTTGAACATTCCTTCAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222696" ref_strand="+" ref_description="SGN-E222696 [cLEL-16-F16](-)">
      <seq>ctctcaaagagagagagattattctccctgacaagtccatagcaaatcacattcaagaagaaatgaaccgtgcgtttgcttatcatgaaatgaccagtttgcagtctgagcaaatctttaactggtttgaaactcatatgagctgatcagattcttatgctgtgtaatcttccttgagtcatcatgggtggaatattgttgccacggctttggattgggtgacaacagatctctatactgttgtgtgctcatgttatttcacgaggttgaagtccaagtgggaataactgtggtcacattgtggtgaaaaatattgtctcggcattcaaacttcctacatgtgaaaagggctgcctactgttattatttggattttcctttttttatatccagaaagaagtgtatagtgaaacacttaggaactaggtctactttctttttttgagaggaaaggaattgaaattaggtctattttcttgtgcttagggattgaacttttcaagtggaagttcctataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="20197" stop="99454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20497" g_stop="21028" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E222696" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20497" e_stop="21028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAAAGAGAGAGAGATTATTCTCCCTGACAAGTCCATAGCAAATCACATTCAAGAAGAAATGAACCTTGCGTTTGCTTATCATGAAATGACCAGTTTGCAGTCTGAGCAAATCTTTAACTGGTTTGAAACTCATATGAGCTGATCAGATTCTTATGCTGTGTAATCTTCCTTGAGTCATCATGGGTGGAATATTGTTGCCACGGCTTTGGATTGGGTGACAACAGATCTCTATACTGTTGTGTGCTCATGTTATTTCACGAGGTTGAAGTCCAAGTGGGAATAACTGTGGTCACATTGTGGTGAAAAATATTGTCTCGGCATTCAAACTTCCTACATGTGAAAAGGGCTGCCTACTGTTATTATTTGGATTTTCCTTTTTTTATATCCAGAAAGAAGTGTATAGTGAAACACTTAGGAACTAGGTCTACTTTC-TTTTTTGAGAGGAAAGGAATTGAAATTAGGTCTATTTTCTTGTGCTTAGGGATTGAACTTTTCAAGTGGAAGTTCCTATAACTTCTTGTTATCTCA</genome_strand>
        <mrna_strand>CTCTCAAAGAGAGAGAGATTATTCTCCCTGACAAGTCCATAGCAAATCACATTCAAGAAGAAATGAACCGTGCGTTTGCTTATCATGAAATGACCAGTTTGCAGTCTGAGCAAATCTTTAACTGGTTTGAAACTCATATGAGCTGATCAGATTCTTATGCTGTGTAATCTTCCTTGAGTCATCATGGGTGGAATATTGTTGCCACGGCTTTGGATTGGGTGACAACAGATCTCTATACTGTTGTGTGCTCATGTTATTTCACGAGGTTGAAGTCCAAGTGGGAATAACTGTGGTCACATTGTGGTGAAAAATATTGTCTCGGCATTCAAACTTCCTACATGTGAAAAGGGCTGCCTACTGTTATTATTTGGATTTTCCTTTTTTTATATCCAGAAAGAAGTGTATAGTGAAACACTTAGGAACTAGGTCTACTTTCTTTTTTTGAGAGGAAAGGAATTGAAATTAGGTCTATTTTCTTGTGCTTAGGGATTGAACTTTTCAAGTGGAAGTTCCTATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737830" ref_strand="+" ref_description="SGN-E737830 [LC11BE11]">
      <seq>aaagtttgttgaagaagctcaatgcctcgtcacatcggttgcatttccactaataaaggaggtaggacaacggattcgtgtttctctttttgttcttgattactgaggttagtttgttttataagcaaaagtagaatgctttatttttatttggaaagataccttcattaccttaaaggataaaacaaaaaaggaataatctgaaattgggagcagtcattcacacttgtaatacaacaagaaatgttttactgataactgattaaacaatgaaggttggtatcctcttgattttgtaagattcaaaagcaaacagaaagaacataattttgttaacgacaagcagataaacattaatcctaaagtaaacacacaaaatatcataaagaactagaaataacaagatattgatgataattgtgaaaatgacttttcaagctctgggcttgagccgaccctggttggctaacttgaacaactgagcctgagctgctgcagcgccgtctgagctgagtgctgtagcaaaattgttcttgacttgggtggtgctgtaactgaacctcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="24147" stop="25314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24447" g_stop="25014" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E737830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24447" e_stop="25014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTGTTGAAGAAGCTCAATGCCTCGTCACATCGGTTGCATTTCCACTAATAAAGGAGGTAGGACAACGGATTCGTGTTTCTCTTTTTGTTCTTGATTACTGAGGTTAGTTTGTTTTATAAGCAAAAGTAGAATGCTTTATTTTTATTTGGAAAGATACCTTCATTACCTTAAAGGATAAAACAAAAAAGGAATAATCTGAAATTGGGAGCAGTCATTCACACTTGTAATACAACAAGAAATGTTTTACTGATAACTGATTAAACAATGAAGGTTGGTATCCTCTTGATTTTGTAAGATTCAAAAGCAAACAGAAAGAACATAATTTTGTTAACGACAAGCAGATAAACATTAATCCTAAAGTAAACACACAAAATATCATAAAGAACTAGAAATAACAAGATATTGATGATAATTGTGAAAATGACTTTTCAAGCTCTGGGCTTGAGCCGACCCTGGTTGGCTAACTTGAACAACTGAGCCTGAGCTGCTGCAGCGCCGTCTGAGCTGAGTGCTGTAGCAAAATTGTTCTTGACTTGGGTGGTGCTGTAACTGAACCTCTTGCT</genome_strand>
        <mrna_strand>AAAGTTTGTTGAAGAAGCTCAATGCCTCGTCACATCGGTTGCATTTCCACTAATAAAGGAGGTAGGACAACGGATTCGTGTTTCTCTTTTTGTTCTTGATTACTGAGGTTAGTTTGTTTTATAAGCAAAAGTAGAATGCTTTATTTTTATTTGGAAAGATACCTTCATTACCTTAAAGGATAAAACAAAAAAGGAATAATCTGAAATTGGGAGCAGTCATTCACACTTGTAATACAACAAGAAATGTTTTACTGATAACTGATTAAACAATGAAGGTTGGTATCCTCTTGATTTTGTAAGATTCAAAAGCAAACAGAAAGAACATAATTTTGTTAACGACAAGCAGATAAACATTAATCCTAAAGTAAACACACAAAATATCATAAAGAACTAGAAATAACAAGATATTGATGATAATTGTGAAAATGACTTTTCAAGCTCTGGGCTTGAGCCGACCCTGGTTGGCTAACTTGAACAACTGAGCCTGAGCTGCTGCAGCGCCGTCTGAGCTGAGTGCTGTAGCAAAATTGTTCTTGACTTGGGTGGTGCTGTAACTGAACCTCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203339" ref_strand="+" ref_description="SGN-E203339 [cLEB-3-L7](-)">
      <seq>agtgctccagggctcggctcaaacatgaacttgctgcaagcactttcaaaccaacataccgatggatttgggcaactctacagggaaggcacagcttctttgctgaactccatggttagcaagaggttcagttacagcaccacccaagtcaagaacaattttgctacagcactcagctcagacggcgctgcagcagctcaggctcagttgttcaagttagccaaccagggtcggctcaagcccagagcttgaaaagtcattttcacaattatcatcaatatcttgttatttctagttctttatgatattttgtgtgtttactttaggattaatgtttatctgcttgtcgttaacaaaattatgttctttctgtttgcttttgaatcttacaaaatcaagaggataccaaccttcattgtttaatcagttatcagtaaaacatttcttgttgtattacaagtgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="25431" stop="24366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25131" g_stop="24667" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="482"/>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E203339" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25131" e_stop="24667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCACCACCCAAGTCAAGAACAATTTTGCTACAGCACTCAGCTCAGACGGCGCTGCAGCAGCTCAGGCTCAGTTGTTCAAGTTAGCCAACCAGGGTCGGCTCAAGCCCAGAGCTTGAAAAGTCATTTTCACAATTATCATCAATATCTTGTTATTTCTAGTTCTTTATGATATTTTGTGTGTTTACTTTAGGATTAATGTTTATCTGCTTGTCGTTAACAAAATTATGTTCTTTCTGTTTGCTTTTGAATCTTACAAAATCAAGAGGATACCAACCTTCATTGTTTAATCAGTTATCAGTAAAACATTTCTTGTTGTATTACAAGTGTGA</genome_strand>
        <mrna_strand>AGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCACCACCCAAGTCAAGAACAATTTTGCTACAGCACTCAGCTCAGACGGCGCTGCAGCAGCTCAGGCTCAGTTGTTCAAGTTAGCCAACCAGGGTCGGCTCAAGCCCAGAGCTTGAAAAGTCATTTTCACAATTATCATCAATATCTTGTTATTTCTAGTTCTTTATGATATTTTGTGTGTTTACTTTAGGATTAATGTTTATCTGCTTGTCGTTAACAAAATTATGTTCTTTCTGTTTGCTTTTGAATCTTACAAAATCAAGAGGATACCAACCTTCATTGTTTAATCAGTTATCAGTAAAACATTTCTTGTTGTATTACAAGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696574" ref_strand="+" ref_description="SGN-E696574 [LH_Ea09H20](-)">
      <seq>tgtaacccccccaactactcctatcattgaccctggcactccaagcactcctgttaccccaaccccatcccctccttttacatgggattactggaggactcccccgggactgatatggggcttgtttggttggtggggaaatgttggtagtgcatttggcgtggctagtgttccagggttcggttcaaacatgaacttgttgcaagcactttcaaaccaaccccccaatggatttgggcaactttacagggaaggccccccttctttgttgaactccatggttagcaagaggttcagttacagccccccccaagtcaagaacaattttgttacagcactcagttcagacagcgctgcagcagctcaggctcagttgttcaagttagccaaccagggtcggctcaaccccagagcttgaaaagtcattttcccaattatcatcaatattttgttatttttagttctttatgatattttgggtgtttactttaggattaatgtttatttgcttgtcgttaacaaaattatgttttttctgtttgtttttgaattttacaaaatcaagaggataccacccttcagtgtttaatcagttatcagtaaaacattttttgttttaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26044" stop="24379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25744" g_stop="25658" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25657" i_stop="25211" i_length="447">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25210" g_stop="24682" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="616" r_length="529" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="660"/>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E696574" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25744" e_stop="25658"/>
          <exon e_start="25210" e_stop="24682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGAGTAAGTTTACATCTTTTTTTTTTCAACACAGTTTACATCTTTTTTCTTCTTATTTTATAAGTATGAGTAATTTTACTAACATCGACAGCTTTATAACCTGTTTGGCCAAGCTTTCTAAATCTGCTTATTTTAAAAAGTACTTTTGTAGAGTAATAGTTTGCATTTGGATAATCAAGTCGATAGTACTTTTGCAAAACTAGAGAAATAGAATGTGCTTGGCCAATGTCCAGAAGTGTTTTTGAGGAAAACTATTTTTTTTTAGCTTCTGAAAAACAGTTTTTGTGCTACTCAAAAGCACTTATTTTTTCCAAAAATCTTGGCTAAACACGTCAACTTTCTAAAACAACCACTTTTGGCTTCCCAGAAGAGCTTGGTCAAAAAGGGTATTAGTTTGCATTCTTAACTTCAATATGCAGCGTCTTTTAACACTTCATGATATGATTGCAGTTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCACCACCCAAGTCAAGAACAATTTTGCTACAGCACTCAGCTCAGACGGCGCTGCAGCAGCTCAGGCTCAGTTGTTCAAGTTAGCCAACCAGGGTCGGCTCAAGCCCAGAGCTTGAAAAGTCATTTTCACAATTATCATCAATATCTTGTTATTTCTAGTTCTTTATGATATTTTGTGTGTTTACTTTAGGATTAATGTTTATCTGCTTGTCGTTAACAAAATTATGTTCTTTCTGTTTGCTTTTGAATCTTACAAAATCAAGAGGATACCAACCTTCATTGTTTAATCAGTTATCAGTAAAACATTTCTTGTT</genome_strand>
        <mrna_strand>TGTAACCCCCCCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGTTACCCCAACCCCATCCCCTCCTTTTACATGGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTGGAGGACTCCCCCGGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGTTCCAGGGTTCGGTTCAAACATGAACTTGTTGCAAGCACTTTCAAACCAACCCCCCAATGGATTTGGGCAACTTTACAGGGAAGGCCCCCCTTCTTTGTTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCCCCCCCCAAGTCAAGAACAATTTTGTTACAGCACTCAGTTCAGACAGCGCTGCAGCAGCTCAGGCTCAGTTGTTCAAGTTAGCCAACCAGGGTCGGCTCAACCCCAGAGCTTGAAAAGTCATTTTCCCAATTATCATCAATATTTTGTTATTTTTAGTTCTTTATGATATTTTGGGTGTTTACTTTAGGATTAATGTTTATTTGCTTGTCGTTAACAAAATTATGTTTTTTCTGTTTGTTTTTGAATTTTACAAAATCAAGAGGATACCACCCTTCAGTGTTTAATCAGTTATCAGTAAAACATTTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366784" ref_strand="+" ref_description="SGN-E366784 [cLPT-6-I23](-)">
      <seq>gcactcagctcagacagctctgcagcagctcaggctcagttgttcaagttagccaaccagggtcggcacaagcccagcgcttgaaaagtcattttcacaattatcatcaatatcttgttatttcaagttcttaataatattttgtgtgattagtttaggattaatgtttatcagcatgttgttagcaaaattaatgttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="25263" stop="24463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24963" g_stop="24763" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E366784" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24963" e_stop="24763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTCAGCTCAGACGGCGCTGCAGCAGCTCAGGCTCAGTTGTTCAAGTTAGCCAACCAGGGTCGGCTCAAGCCCAGAGCTTGAAAAGTCATTTTCACAATTATCATCAATATCTTGTTATTTCTAGTTCTTTATGATATTTTGTGTGTTTACTTTAGGATTAATGTTTATCTGCTTGTCGTTAACAAAATT-ATGTTCTTT</genome_strand>
        <mrna_strand>GCACTCAGCTCAGACAGCTCTGCAGCAGCTCAGGCTCAGTTGTTCAAGTTAGCCAACCAGGGTCGGCACAAGCCCAGCGCTTGAAAAGTCATTTTCACAATTATCATCAATATCTTGTTATTTCAAGTTCTTAATAATATTTTGTGTGATTAGTTTAGGATTAATGTTTATCAGCATGTTGTTAGCAAAATTAATGTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342029" ref_strand="+" ref_description="SGN-E342029 [cTOF-10-D1]">
      <seq>tcttttgcttcatttgaagaagagaaaaactactacacacctgatccacatactggaagtccaccaacaggttcaagcacaccaccctatcatgcaactccatctcatggaagcagtagccatgaaagcaaaccaccagcaaactgtggcaaccctccaaaaggagggcagcatcatgaccctaccccagcttctccttcaggtggctactatccccaccctccaagtacacctacacctacacctagtaccccatccacacccactattgtaaccccaccaactactcctatcattgaccctggcactccaagcactcctgctaccccaacaccatcacctccttttacatgcgattactggaggactcacccaggactgatatggggcttgtttggttggtggggaaatgttggtagtgcatttggcgtggctagtgctccagggctcggctcaaacatgaacttgctgcaagcactttcaaaccaacataccgatggatttgggcaactctacagggaaggcacagcttctttgctgaactccatggttagcaagaggttcagttacagcaccacccaagtcaagaacaattttgctacagcactcagctcagacggcgctgcagcagctcaagctcagttgntcaagttagccaaccagggtcggctcaagcccagagcttgaaaagtcattttcacaattatcatcaatatcttgttatttctagttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26707" stop="24532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26407" g_stop="26338" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26337" i_stop="25944" i_length="394">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25943" g_stop="25658" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="356" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25657" i_stop="25211" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25210" g_stop="24832" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="735" r_length="379" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E342029" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26407" e_stop="26338"/>
          <exon e_start="25943" e_stop="25658"/>
          <exon e_start="25210" e_stop="24832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAGGTTCCTTACCCTCCATATATATATTTTGCTATTTGCACTTTAAAGAAAACCATAATGGCTATTTTTATAGATTACCTTAACAATTTCCTAAGCATTGTATTTGCTATTATATGGAAAGCACTATAAATTATAAAATTGTTAAGTATCAAAGACCTTGCCACCTTATATTGGTGTTCCTGTTGTTTTATATAAATTGCGGGAGGCAGCATTCATCCCCACATTATTTGTTAGGTTGGTTTCATAACGGGGTTGTTCAGTACAAAGCGCCCTTTATTTTGCTAGTTACGAGTTTTGGAGTTCTTGCAATTAGATGGAAGCATTTAGTCCTAGACCATTTGGAAAGTGTCTCAAGTTATACTGTCTTCACTCTGACAATTTATTTTGTGGATAACAGGTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGAGTAAGTTTACATCTTTTTTTTTTCAACACAGTTTACATCTTTTTTCTTCTTATTTTATAAGTATGAGTAATTTTACTAACATCGACAGCTTTATAACCTGTTTGGCCAAGCTTTCTAAATCTGCTTATTTTAAAAAGTACTTTTGTAGAGTAATAGTTTGCATTTGGATAATCAAGTCGATAGTACTTTTGCAAAACTAGAGAAATAGAATGTGCTTGGCCAATGTCCAGAAGTGTTTTTGAGGAAAACTATTTTTTTTTAGCTTCTGAAAAACAGTTTTTGTGCTACTCAAAAGCACTTATTTTTTCCAAAAATCTTGGCTAAACACGTCAACTTTCTAAAACAACCACTTTTGGCTTCCCAGAAGAGCTTGGTCAAAAAGGGTATTAGTTTGCATTCTTAACTTCAATATGCAGCGTCTTTTAACACTTCATGATATGATTGCAGTTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCACCACCCAAGTCAAGAACAATTTTGCTACAGCACTCAGCTCAGACGGCGCTGCAGCAGCTCAGGCTCAGTTGTTCAAGTTAGCCAACCAGGGTCGGCTCAAGCCCAGAGCTTGAAAAGTCATTTTCACAATTATCATCAATATCTTGTTATTTCTAGTTCTT</genome_strand>
        <mrna_strand>TCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCACCACCCAAGTCAAGAACAATTTTGCTACAGCACTCAGCTCAGACGGCGCTGCAGCAGCTCAAGCTCAGTTGNTCAAGTTAGCCAACCAGGGTCGGCTCAAGCCCAGAGCTTGAAAAGTCATTTTCACAATTATCATCAATATCTTGTTATTTCTAGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728492" ref_strand="+" ref_description="SGN-E728492 [LA18AA06]">
      <seq>atctctcccttcattcgttctcttttatctctgtcagcctccttgagaagcaaaccatcatggcaaaacagagaagcaaccagagttctcgaattctgtgggccgcatttgctgcactgctcttgcagaatttggtcattcccgtcgtgtcttttgcttcatttgaagaagagaaaaactactacacacctgatccacatactggaagtccaccaacaggttcaagcacaccaccctatcatgcaactccatctcatggaagcagtagccatgaaagcaaaccaccagcaaactgtggcaaccctccaaaaggagggcagcatcatgaccctaccccagcttctccttcaggtggctactatccccaccctccaagtacacctacacctacacctagtaccccatccacacccactattgtaaccccaccaactactcctatcattgaccctggcactccaagcactcctgctaccccaacaccatcacctccttttacatgcgattactggaggactcacccaggactgatatggggcttgtttggttggtggggaaatgttggtagtgcatttggcgtggctagtgctccagggctcggctcaaacatgaacttgctgcaagcactttcaaaccaacataccgatggatttgggcaactctacagggaaggcacagcttctttgctgaactccatggttagcaagaggttcagttacagcaccacccaagtcaagaacaattttgctacagcactcagctcagacggcgctgcagcagctcaggctcagttgttcaagttagccaaccagggtcggctcaagcccagagcttgaaaagtcattttcacaattatcatcaatatcttgntatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26856" stop="24539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26556" g_stop="26338" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26337" i_stop="25944" i_length="394">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25943" g_stop="25658" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="505" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25657" i_stop="25211" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25210" g_stop="24839" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="877" r_length="372" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E728492" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26556" e_stop="26338"/>
          <exon e_start="25943" e_stop="25658"/>
          <exon e_start="25210" e_stop="24839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCCCTTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAGGTTCCTTACCCTCCATATATATATTTTGCTATTTGCACTTTAAAGAAAACCATAATGGCTATTTTTATAGATTACCTTAACAATTTCCTAAGCATTGTATTTGCTATTATATGGAAAGCACTATAAATTATAAAATTGTTAAGTATCAAAGACCTTGCCACCTTATATTGGTGTTCCTGTTGTTTTATATAAATTGCGGGAGGCAGCATTCATCCCCACATTATTTGTTAGGTTGGTTTCATAACGGGGTTGTTCAGTACAAAGCGCCCTTTATTTTGCTAGTTACGAGTTTTGGAGTTCTTGCAATTAGATGGAAGCATTTAGTCCTAGACCATTTGGAAAGTGTCTCAAGTTATACTGTCTTCACTCTGACAATTTATTTTGTGGATAACAGGTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGAGTAAGTTTACATCTTTTTTTTTTCAACACAGTTTACATCTTTTTTCTTCTTATTTTATAAGTATGAGTAATTTTACTAACATCGACAGCTTTATAACCTGTTTGGCCAAGCTTTCTAAATCTGCTTATTTTAAAAAGTACTTTTGTAGAGTAATAGTTTGCATTTGGATAATCAAGTCGATAGTACTTTTGCAAAACTAGAGAAATAGAATGTGCTTGGCCAATGTCCAGAAGTGTTTTTGAGGAAAACTATTTTTTTTTAGCTTCTGAAAAACAGTTTTTGTGCTACTCAAAAGCACTTATTTTTTCCAAAAATCTTGGCTAAACACGTCAACTTTCTAAAACAACCACTTTTGGCTTCCCAGAAGAGCTTGGTCAAAAAGGGTATTAGTTTGCATTCTTAACTTCAATATGCAGCGTCTTTTAACACTTCATGATATGATTGCAGTTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCACCACCCAAGTCAAGAACAATTTTGCTACAGCACTCAGCTCAGACGGCGCTGCAGCAGCTCAGGCTCAGTTGTTCAAGTTAGCCAACCAGGGTCGGCTCAAGCCCAGAGCTTGAAAAGTCATTTTCACAATTATCATCAATATCTTGTTATTTCT</genome_strand>
        <mrna_strand>ATCTCTCCCTTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCACCACCCAAGTCAAGAACAATTTTGCTACAGCACTCAGCTCAGACGGCGCTGCAGCAGCTCAGGCTCAGTTGTTCAAGTTAGCCAACCAGGGTCGGCTCAAGCCCAGAGCTTGAAAAGTCATTTTCACAATTATCATCAATATCTTGNTATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692734" ref_strand="+" ref_description="SGN-E692734 [LH_Ea09H20]">
      <seq>tttcattcgttctcttttatctctgtcagcctccttgacaagcataccatcatggcaaaacagagaagcaaccagagttctcgaattctgtgggccgcatttgctgcactgctcttgcagaatttggtcattcccgtcgtgtcttttgcttcatttgaagaagagaaaaattactacactcctgatccacataccggaagtccaccaacaggttcaagcacaccaccctatcatgcaactccatctcatggaagcggtagccatgaaagcaaaccaccagcaaactgtggcaaccctccaaaaggagggcagcatcatgaccctaccccagcttctccttcaggtggctactatccccaccctccaagtacacctacacctacacctagtaccccatccacacccactattgtaaccccaccaactactcctatcattgaccctggcactccaagcactcctgctaccccaacaccatcacctccttttacatgcgattactggaggactcacccgggactgatatggggcttgtttggttggtggggaaatgttggtagtgcatttggcgtggctagtgctccagggctcggctcaaacatgaacttgctgcaagcactttcaaaccaacaccccaatggatttgggcaactctacagggaaggcacagcttctttgctgaactccatggttagcaagaggttcagttacagcaccacccaagtcaagaacaattttgctacagcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26847" stop="24657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26548" g_stop="26338" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26337" i_stop="25944" i_length="394">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25943" g_stop="25658" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="497" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25657" i_stop="25211" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25210" g_stop="24957" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="751" r_length="254" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E692734" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26548" e_stop="26338"/>
          <exon e_start="25943" e_stop="25658"/>
          <exon e_start="25210" e_stop="24957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAGGTTCCTTACCCTCCATATATATATTTTGCTATTTGCACTTTAAAGAAAACCATAATGGCTATTTTTATAGATTACCTTAACAATTTCCTAAGCATTGTATTTGCTATTATATGGAAAGCACTATAAATTATAAAATTGTTAAGTATCAAAGACCTTGCCACCTTATATTGGTGTTCCTGTTGTTTTATATAAATTGCGGGAGGCAGCATTCATCCCCACATTATTTGTTAGGTTGGTTTCATAACGGGGTTGTTCAGTACAAAGCGCCCTTTATTTTGCTAGTTACGAGTTTTGGAGTTCTTGCAATTAGATGGAAGCATTTAGTCCTAGACCATTTGGAAAGTGTCTCAAGTTATACTGTCTTCACTCTGACAATTTATTTTGTGGATAACAGGTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGAGTAAGTTTACATCTTTTTTTTTTCAACACAGTTTACATCTTTTTTCTTCTTATTTTATAAGTATGAGTAATTTTACTAACATCGACAGCTTTATAACCTGTTTGGCCAAGCTTTCTAAATCTGCTTATTTTAAAAAGTACTTTTGTAGAGTAATAGTTTGCATTTGGATAATCAAGTCGATAGTACTTTTGCAAAACTAGAGAAATAGAATGTGCTTGGCCAATGTCCAGAAGTGTTTTTGAGGAAAACTATTTTTTTTTAGCTTCTGAAAAACAGTTTTTGTGCTACTCAAAAGCACTTATTTTTTCCAAAAATCTTGGCTAAACACGTCAACTTTCTAAAACAACCACTTTTGGCTTCCCAGAAGAGCTTGGTCAAAAAGGGTATTAGTTTGCATTCTTAACTTCAATATGCAGCGTCTTTTAACACTTCATGATATGATTGCAGTTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCACCACCCAAGTCAAGAACAATTTTGCTACAGCACTCA</genome_strand>
        <mrna_strand>TTTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGACAAGCATACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAATTACTACACTCCTGATCCACATACCGGAAGTCCACCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCGGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTGGAGGACTCACCCGGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACACCCCAATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCACCACCCAAGTCAAGAACAATTTTGCTACAGCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279052" ref_strand="-" ref_description="SGN-E279052 [cLEL-4-I19](-)">
      <seq>gcacgagggtggctactatcctcaccctccaagtacacctacacctacacctagtaccccatccacacccactattgtaaccccaccaactactcctatcattgaccctggcactccaagcactcctgctaccccaacaccatcacctccttttacatgcgattactggaggactcacccaggactgatatggggcttgtttggttggtggggaaatgttggtagtgcatttggcgtggctagtgctccagggctcggctcaaacatgaacttgctgcaagcactttcaaaccaacataccgatggatttgggcaactctacagggaaggcacagcttctttgctgaactccatggttagcaagaggttcagttacagcaccacccaagtcaagaacaattttgctacagcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26112" stop="24658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25819" g_stop="25658" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25657" i_stop="25211" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25210" g_stop="24958" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="415" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E279052" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279052" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25819" e_stop="25658"/>
          <exon e_start="25210" e_stop="24958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGAGTAAGTTTACATCTTTTTTTTTTCAACACAGTTTACATCTTTTTTCTTCTTATTTTATAAGTATGAGTAATTTTACTAACATCGACAGCTTTATAACCTGTTTGGCCAAGCTTTCTAAATCTGCTTATTTTAAAAAGTACTTTTGTAGAGTAATAGTTTGCATTTGGATAATCAAGTCGATAGTACTTTTGCAAAACTAGAGAAATAGAATGTGCTTGGCCAATGTCCAGAAGTGTTTTTGAGGAAAACTATTTTTTTTTAGCTTCTGAAAAACAGTTTTTGTGCTACTCAAAAGCACTTATTTTTTCCAAAAATCTTGGCTAAACACGTCAACTTTCTAAAACAACCACTTTTGGCTTCCCAGAAGAGCTTGGTCAAAAAGGGTATTAGTTTGCATTCTTAACTTCAATATGCAGCGTCTTTTAACACTTCATGATATGATTGCAGTTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCACCACCCAAGTCAAGAACAATTTTGCTACAGCACTC</genome_strand>
        <mrna_strand>GCACGAGGGTGGCTACTATCCTCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCACCACCCAAGTCAAGAACAATTTTGCTACAGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316328" ref_strand="+" ref_description="SGN-E316328 [cTOA-25-I15]">
      <seq>cttcattcgttctcttttatctctgtcagcctccttgagaagcaaaccatcatggcaaaacagagaagcaaccagagttctcgaattctgtgggccgcatttgctgcactgctcttgcagaatttggtcattcccgtcgtgtcttttgcttcatttgaagaagagaaaaactactacacacctgatccacatactggaagtccaccaacaggttcaagcacaccaccctatcatgcaactccatctcatggaagcagtagccatgaaagcaaaccaccagcaaactgtggcaaccctccaaaaggagggcagcatcatgaccctaccccagcttctccttcaggtggctactatccccaccctccaagtacacctacacctacacctagtaccccatccacacccactattgtaaccccaccaactactcctatcattgaccctggcactccaagcactcctgctaccccaacaccatcacctccttttacatgcgattactggaggactcacccaggactgatatggggcttgtttggttggtggggaaatgttggtagtgcatttggcgtggctagtgctccagggctcggctcaaacatgaacttgctgncagcactttcaaccaacataccgatggatttgggcaactctacagggaaggcacagcttctttgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26848" stop="24725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26548" g_stop="26338" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26337" i_stop="25944" i_length="394">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25943" g_stop="25658" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="497" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25657" i_stop="25211" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25210" g_stop="25025" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="682" r_length="185" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E316328" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26548" e_stop="26338"/>
          <exon e_start="25943" e_stop="25658"/>
          <exon e_start="25210" e_stop="25025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAGGTTCCTTACCCTCCATATATATATTTTGCTATTTGCACTTTAAAGAAAACCATAATGGCTATTTTTATAGATTACCTTAACAATTTCCTAAGCATTGTATTTGCTATTATATGGAAAGCACTATAAATTATAAAATTGTTAAGTATCAAAGACCTTGCCACCTTATATTGGTGTTCCTGTTGTTTTATATAAATTGCGGGAGGCAGCATTCATCCCCACATTATTTGTTAGGTTGGTTTCATAACGGGGTTGTTCAGTACAAAGCGCCCTTTATTTTGCTAGTTACGAGTTTTGGAGTTCTTGCAATTAGATGGAAGCATTTAGTCCTAGACCATTTGGAAAGTGTCTCAAGTTATACTGTCTTCACTCTGACAATTTATTTTGTGGATAACAGGTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGAGTAAGTTTACATCTTTTTTTTTTCAACACAGTTTACATCTTTTTTCTTCTTATTTTATAAGTATGAGTAATTTTACTAACATCGACAGCTTTATAACCTGTTTGGCCAAGCTTTCTAAATCTGCTTATTTTAAAAAGTACTTTTGTAGAGTAATAGTTTGCATTTGGATAATCAAGTCGATAGTACTTTTGCAAAACTAGAGAAATAGAATGTGCTTGGCCAATGTCCAGAAGTGTTTTTGAGGAAAACTATTTTTTTTTAGCTTCTGAAAAACAGTTTTTGTGCTACTCAAAAGCACTTATTTTTTCCAAAAATCTTGGCTAAACACGTCAACTTTCTAAAACAACCACTTTTGGCTTCCCAGAAGAGCTTGGTCAAAAAGGGTATTAGTTTGCATTCTTAACTTCAATATGCAGCGTCTTTTAACACTTCATGATATGATTGCAGTTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAA</genome_strand>
        <mrna_strand>CTTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGNCAGCACTTTC-AACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366970" ref_strand="+" ref_description="SGN-E366970 [cLPT-6-K8]">
      <seq>ttcattcgttctcttttatctctgtcagcctccttgagaagcaaaccatcatggcaaaacagagaagcagccagagttctcgaattctgtgggccgcatttgctgcaatgctcttgcagaatttggtcattcccgtcgtgtcttttgcttcatttgaagaagagaaaaactactacactcctgatccacataccggaagtccaccaacaggttcaagcacaccaccctatcatgcaactccatctcatggaagcggtagccatgaaagcaaaccaccagcaaactgtggcaaccctccaaaaggagggcagcatcatgaccctaccccagcttctccttcaggtggctactatccccaccctccaagtacacctacacctacacctagtaccccatccacacccactattgtaaccccaccaactactcctatcattgaccctggcactccaagcactcctgcgaccccaacaccatcacctccttttacatgcgattactggaggactcacccgggactgatatggggcttgtttggttggtggggaaatgttggtagtgcatttggcgtggctagtgctccagggctcggctcaaacatgaacttgctgcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26847" stop="24791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26547" g_stop="26338" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26337" i_stop="25944" i_length="394">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25943" g_stop="25658" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="496" r_length="286" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25657" i_stop="25211" i_length="447">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25210" g_stop="25091" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="616" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E366970" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26547" e_stop="26338"/>
          <exon e_start="25943" e_stop="25658"/>
          <exon e_start="25210" e_stop="25091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAGGTTCCTTACCCTCCATATATATATTTTGCTATTTGCACTTTAAAGAAAACCATAATGGCTATTTTTATAGATTACCTTAACAATTTCCTAAGCATTGTATTTGCTATTATATGGAAAGCACTATAAATTATAAAATTGTTAAGTATCAAAGACCTTGCCACCTTATATTGGTGTTCCTGTTGTTTTATATAAATTGCGGGAGGCAGCATTCATCCCCACATTATTTGTTAGGTTGGTTTCATAACGGGGTTGTTCAGTACAAAGCGCCCTTTATTTTGCTAGTTACGAGTTTTGGAGTTCTTGCAATTAGATGGAAGCATTTAGTCCTAGACCATTTGGAAAGTGTCTCAAGTTATACTGTCTTCACTCTGACAATTTATTTTGTGGATAACAGGTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGAGTAAGTTTACATCTTTTTTTTTTCAACACAGTTTACATCTTTTTTCTTCTTATTTTATAAGTATGAGTAATTTTACTAACATCGACAGCTTTATAACCTGTTTGGCCAAGCTTTCTAAATCTGCTTATTTTAAAAAGTACTTTTGTAGAGTAATAGTTTGCATTTGGATAATCAAGTCGATAGTACTTTTGCAAAACTAGAGAAATAGAATGTGCTTGGCCAATGTCCAGAAGTGTTTTTGAGGAAAACTATTTTTTTTTAGCTTCTGAAAAACAGTTTTTGTGCTACTCAAAAGCACTTATTTTTTCCAAAAATCTTGGCTAAACACGTCAACTTTCTAAAACAACCACTTTTGGCTTCCCAGAAGAGCTTGGTCAAAAAGGGTATTAGTTTGCATTCTTAACTTCAATATGCAGCGTCTTTTAACACTTCATGATATGATTGCAGTTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGC</genome_strand>
        <mrna_strand>TTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAGCCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCAATGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACTCCTGATCCACATACCGGAAGTCCACCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCGGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCGACCCCAACACCATCACCTCCTTTTACATGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTGGAGGACTCACCCGGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366919" ref_strand="+" ref_description="SGN-E366919 [cLPT-6-K13]">
      <seq>ttcattcgttctcttttatctctgtcagcctccttgagaagcaaaccatcatggcaaaacagagaagcagccagagttctcgaattctgtgggccgcatttgctgcaatgctcttgcagaatttggtcattcccgtcgtgtcttttgcttcatttgaagaagagaaaaactactacactcctgatccacataccggaagtccaccaacaggttcaagcacaccaccctatcatgcaactccatctcatggaagcggtagccatgaaagcaaaccaccagcaaactgtggcaaccctccaaaaggagggcagcatcatgaccctaccccagcttctccttcaggtggctactatccccaccctccaagtacacctacacctacacctagtaccccatccacacccactattgtaaccccaccaactactcctatcattgaccctggcactccaagcactcctgcgaccccaacaccatcacctccttttacatgcgattactggaggactcacccgggactgatatggggcttgtttggttggtggggaaatgttggtagtgcatttggcgtggctagtgctccagggctcggctcaaacatgaacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26847" stop="24798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26547" g_stop="26338" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26337" i_stop="25944" i_length="394">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25943" g_stop="25658" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="496" r_length="286" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25657" i_stop="25211" i_length="447">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25210" g_stop="25098" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="609" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E366919" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26547" e_stop="26338"/>
          <exon e_start="25943" e_stop="25658"/>
          <exon e_start="25210" e_stop="25098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAGGTTCCTTACCCTCCATATATATATTTTGCTATTTGCACTTTAAAGAAAACCATAATGGCTATTTTTATAGATTACCTTAACAATTTCCTAAGCATTGTATTTGCTATTATATGGAAAGCACTATAAATTATAAAATTGTTAAGTATCAAAGACCTTGCCACCTTATATTGGTGTTCCTGTTGTTTTATATAAATTGCGGGAGGCAGCATTCATCCCCACATTATTTGTTAGGTTGGTTTCATAACGGGGTTGTTCAGTACAAAGCGCCCTTTATTTTGCTAGTTACGAGTTTTGGAGTTCTTGCAATTAGATGGAAGCATTTAGTCCTAGACCATTTGGAAAGTGTCTCAAGTTATACTGTCTTCACTCTGACAATTTATTTTGTGGATAACAGGTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGAGTAAGTTTACATCTTTTTTTTTTCAACACAGTTTACATCTTTTTTCTTCTTATTTTATAAGTATGAGTAATTTTACTAACATCGACAGCTTTATAACCTGTTTGGCCAAGCTTTCTAAATCTGCTTATTTTAAAAAGTACTTTTGTAGAGTAATAGTTTGCATTTGGATAATCAAGTCGATAGTACTTTTGCAAAACTAGAGAAATAGAATGTGCTTGGCCAATGTCCAGAAGTGTTTTTGAGGAAAACTATTTTTTTTTAGCTTCTGAAAAACAGTTTTTGTGCTACTCAAAAGCACTTATTTTTTCCAAAAATCTTGGCTAAACACGTCAACTTTCTAAAACAACCACTTTTGGCTTCCCAGAAGAGCTTGGTCAAAAAGGGTATTAGTTTGCATTCTTAACTTCAATATGCAGCGTCTTTTAACACTTCATGATATGATTGCAGTTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGC</genome_strand>
        <mrna_strand>TTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAGCCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCAATGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACTCCTGATCCACATACCGGAAGTCCACCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCGGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCGACCCCAACACCATCACCTCCTTTTACATGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTGGAGGACTCACCCGGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314568" ref_strand="+" ref_description="SGN-E314568 [cTOA-20-A10]">
      <seq>tctcttttatctctgtcagcctccttgagaagcaaaccatcatggcaaaacagagaagcaaccagagttctcgaattctgtgggccgcatttgctgcactgctcttgcagaatttggtcattcccgtcgtgtcttttgcttcatttgaagaagagaaaaactactacacacctgatccacatactggaagtccaccaacaggttcaagcacaccaccctatcatgcaactccatctcatggaagcagtagccatgaaagcaaaccaccagcaaactgtggcaaccctccaaaaggagggcagcatcatgaccctaccccagcttctccttcaggtggctactatccccaccctccaagtacacctacacctacacctagtaccccatccacacccactattgtaaccccaccaactactcctatcattgaccctggcactccaagcactcctgctaccccaacaccatcacctccttatacatgcgattactggaggactcacccaggactgatatggggccttgttggatggtggggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26838" stop="24857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26538" g_stop="26338" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26337" i_stop="25944" i_length="394">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25943" g_stop="25658" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="487" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25657" i_stop="25211" i_length="447">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25210" g_stop="25157" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="541" r_length="54" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E314568" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26538" e_stop="26338"/>
          <exon e_start="25943" e_stop="25658"/>
          <exon e_start="25210" e_stop="25157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAGGTTCCTTACCCTCCATATATATATTTTGCTATTTGCACTTTAAAGAAAACCATAATGGCTATTTTTATAGATTACCTTAACAATTTCCTAAGCATTGTATTTGCTATTATATGGAAAGCACTATAAATTATAAAATTGTTAAGTATCAAAGACCTTGCCACCTTATATTGGTGTTCCTGTTGTTTTATATAAATTGCGGGAGGCAGCATTCATCCCCACATTATTTGTTAGGTTGGTTTCATAACGGGGTTGTTCAGTACAAAGCGCCCTTTATTTTGCTAGTTACGAGTTTTGGAGTTCTTGCAATTAGATGGAAGCATTTAGTCCTAGACCATTTGGAAAGTGTCTCAAGTTATACTGTCTTCACTCTGACAATTTATTTTGTGGATAACAGGTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGAGTAAGTTTACATCTTTTTTTTTTCAACACAGTTTACATCTTTTTTCTTCTTATTTTATAAGTATGAGTAATTTTACTAACATCGACAGCTTTATAACCTGTTTGGCCAAGCTTTCTAAATCTGCTTATTTTAAAAAGTACTTTTGTAGAGTAATAGTTTGCATTTGGATAATCAAGTCGATAGTACTTTTGCAAAACTAGAGAAATAGAATGTGCTTGGCCAATGTCCAGAAGTGTTTTTGAGGAAAACTATTTTTTTTTAGCTTCTGAAAAACAGTTTTTGTGCTACTCAAAAGCACTTATTTTTTCCAAAAATCTTGGCTAAACACGTCAACTTTCTAAAACAACCACTTTTGGCTTCCCAGAAGAGCTTGGTCAAAAAGGGTATTAGTTTGCATTCTTAACTTCAATATGCAGCGTCTTTTAACACTTCATGATATGATTGCAGTTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAA</genome_strand>
        <mrna_strand>TCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTATACATGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTGGAGGACTCACCCAGGACTGATATGGGGCCTTGTTGGATGGTGGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203338" ref_strand="+" ref_description="SGN-E203338 [cLEB-3-L7]">
      <seq>gcacgagattcgttctcttttatctctgtcagcctccttgagaagcaaaccatcatggcaaaacagagaagcaaccagagttctcgaattctgtgggccgcatttgctgcactgctcttgcagaatttggtcattcccgtcgtgtcttttgcttcatttgaagaagagaaaaactactacacacctgatccacatactggaagtccaccaacaggttcaagcacaccaccctatcatgcaactccatctcatggaagcagtagccatgaaagcaaaccaccagcaaactgtggcaaccctccaaaaggagggcagcatcatgaccctaccccagcttctccttcaggtggctactatccccaccctccaagtacacctacacctacacctagtaccccatccacacccactattgtaaccccaccaactactcctatcattgaccctggcactccaagcactcctgctaccccaacaccatcacctccttttacatgcgattactggaggacttacccaggactgatatggggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26844" stop="24876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26551" g_stop="26338" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26337" i_stop="25944" i_length="394">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25943" g_stop="25658" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="500" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25657" i_stop="25211" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25210" g_stop="25176" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="535" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E203338" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26551" e_stop="26338"/>
          <exon e_start="25943" e_stop="25658"/>
          <exon e_start="25210" e_stop="25176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAGGTTCCTTACCCTCCATATATATATTTTGCTATTTGCACTTTAAAGAAAACCATAATGGCTATTTTTATAGATTACCTTAACAATTTCCTAAGCATTGTATTTGCTATTATATGGAAAGCACTATAAATTATAAAATTGTTAAGTATCAAAGACCTTGCCACCTTATATTGGTGTTCCTGTTGTTTTATATAAATTGCGGGAGGCAGCATTCATCCCCACATTATTTGTTAGGTTGGTTTCATAACGGGGTTGTTCAGTACAAAGCGCCCTTTATTTTGCTAGTTACGAGTTTTGGAGTTCTTGCAATTAGATGGAAGCATTTAGTCCTAGACCATTTGGAAAGTGTCTCAAGTTATACTGTCTTCACTCTGACAATTTATTTTGTGGATAACAGGTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGAGTAAGTTTACATCTTTTTTTTTTCAACACAGTTTACATCTTTTTTCTTCTTATTTTATAAGTATGAGTAATTTTACTAACATCGACAGCTTTATAACCTGTTTGGCCAAGCTTTCTAAATCTGCTTATTTTAAAAAGTACTTTTGTAGAGTAATAGTTTGCATTTGGATAATCAAGTCGATAGTACTTTTGCAAAACTAGAGAAATAGAATGTGCTTGGCCAATGTCCAGAAGTGTTTTTGAGGAAAACTATTTTTTTTTAGCTTCTGAAAAACAGTTTTTGTGCTACTCAAAAGCACTTATTTTTTCCAAAAATCTTGGCTAAACACGTCAACTTTCTAAAACAACCACTTTTGGCTTCCCAGAAGAGCTTGGTCAAAAAGGGTATTAGTTTGCATTCTTAACTTCAATATGCAGCGTCTTTTAACACTTCATGATATGATTGCAGTTACTGGAGGACTCACCCAGGACTGATATGGGGCT</genome_strand>
        <mrna_strand>GCACGAGATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTGGAGGACTTACCCAGGACTGATATGGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284656" ref_strand="+" ref_description="SGN-E284656 [cLES-3-G13]">
      <seq>tctcttttatctctgtcagcctccttgagaagcaaaccatcatggcaaaacagagaagcaaccagagttctcgaattctgtgggccgcatttgctgcactgctcttgcagaatttggtcattcccgtcgtgtcttttgcttcatttgaagaagagaaaaactactacacacctgatccacatactggaagtccaccaacaggttcaagcacaccaccctatcatgcaactccatctcatggaagcagtagccatgaaagcaaaccaccagcaaactgtggcaaccctccaaaaggagggcagcatcatgaccctaccccagcttctccttcaggtggctactatccccaccctccaagtacacctacacctacacctagtaccccatccacacccactattgtaaccccaccaactactcctatcattgaccctggcactccaagcactcctgctaccccaacaccatcacctccttttacatgcgattactggaggactcacccaggactgatatggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26838" stop="24877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26538" g_stop="26338" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26337" i_stop="25944" i_length="394">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25943" g_stop="25658" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="487" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25657" i_stop="25211" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25210" g_stop="25177" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="521" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E284656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26538" e_stop="26338"/>
          <exon e_start="25943" e_stop="25658"/>
          <exon e_start="25210" e_stop="25177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAGGTTCCTTACCCTCCATATATATATTTTGCTATTTGCACTTTAAAGAAAACCATAATGGCTATTTTTATAGATTACCTTAACAATTTCCTAAGCATTGTATTTGCTATTATATGGAAAGCACTATAAATTATAAAATTGTTAAGTATCAAAGACCTTGCCACCTTATATTGGTGTTCCTGTTGTTTTATATAAATTGCGGGAGGCAGCATTCATCCCCACATTATTTGTTAGGTTGGTTTCATAACGGGGTTGTTCAGTACAAAGCGCCCTTTATTTTGCTAGTTACGAGTTTTGGAGTTCTTGCAATTAGATGGAAGCATTTAGTCCTAGACCATTTGGAAAGTGTCTCAAGTTATACTGTCTTCACTCTGACAATTTATTTTGTGGATAACAGGTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGAGTAAGTTTACATCTTTTTTTTTTCAACACAGTTTACATCTTTTTTCTTCTTATTTTATAAGTATGAGTAATTTTACTAACATCGACAGCTTTATAACCTGTTTGGCCAAGCTTTCTAAATCTGCTTATTTTAAAAAGTACTTTTGTAGAGTAATAGTTTGCATTTGGATAATCAAGTCGATAGTACTTTTGCAAAACTAGAGAAATAGAATGTGCTTGGCCAATGTCCAGAAGTGTTTTTGAGGAAAACTATTTTTTTTTAGCTTCTGAAAAACAGTTTTTGTGCTACTCAAAAGCACTTATTTTTTCCAAAAATCTTGGCTAAACACGTCAACTTTCTAAAACAACCACTTTTGGCTTCCCAGAAGAGCTTGGTCAAAAAGGGTATTAGTTTGCATTCTTAACTTCAATATGCAGCGTCTTTTAACACTTCATGATATGATTGCAGTTACTGGAGGACTCACCCAGGACTGATATGGGGC</genome_strand>
        <mrna_strand>TCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTGGAGGACTCACCCAGGACTGATATGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725597" ref_strand="+" ref_description="SGN-E725597 [LA04AG03]">
      <seq>gttctcttttatctctgtcagcctccttgagaagcaaaccatcatggcaaaacagagaagcaaccagagttctcgaattctgtgggccgcatttgctgcactgctcttgcagaatttggtcattcccgtcgtgtcttttgcttcatttgaagaagagaaaaactactacacacctgatccacatactggaagtccaccaacaggttcaagcacaccaccctatcatgcaactccatctcatggaagcagtagccatgaaagcaaaccaccagcaaactgtggcaaccctccaaaaggagggcagcatcatgaccctaccccagcttctccttcaggtggctactatccccaccctccaagtacacctacacctacacctagtaccccatccacacccactattgtaaccccaccaactactcctatcattgaccctggcactccaagcactcctgctaccccaacaccatcacctccttttacatgcgnatactggaggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26840" stop="25355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26540" g_stop="26338" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26337" i_stop="25944" i_length="394">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25943" g_stop="25662" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="485" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E725597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26540" e_stop="26338"/>
          <exon e_start="25943" e_stop="25662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAGGTTCCTTACCCTCCATATATATATTTTGCTATTTGCACTTTAAAGAAAACCATAATGGCTATTTTTATAGATTACCTTAACAATTTCCTAAGCATTGTATTTGCTATTATATGGAAAGCACTATAAATTATAAAATTGTTAAGTATCAAAGACCTTGCCACCTTATATTGGTGTTCCTGTTGTTTTATATAAATTGCGGGAGGCAGCATTCATCCCCACATTATTTGTTAGGTTGGTTTCATAACGGGGTTGTTCAGTACAAAGCGCCCTTTATTTTGCTAGTTACGAGTTTTGGAGTTCTTGCAATTAGATGGAAGCATTTAGTCCTAGACCATTTGGAAAGTGTCTCAAGTTATACTGTCTTCACTCTGACAATTTATTTTGTGGATAACAGGTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACAT</genome_strand>
        <mrna_strand>GTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295729" ref_strand="+" ref_description="SGN-E295729 [cLET-25-C13]">
      <seq>ttctccatctctcccttcattcgttctcttttatctctgtcagcctccttgagaagcaaaccatcatggcaaaacagagaagcaaccagagttctcgaattctgtgggccgcatttgctgcactgctcttgcagaatttggtcattcccgtcgtgtcttttgcttcatttgaagaagagaaaaactactacacacctgatccacatactggaagtccaccaacaggttcaagcacaccaccctatcatgcaactccatctcatggaagcagtagccatgaaagcaaaccaccagcaaactgtggcaaccctccaaaaggagggcagcatcatgaccctaccccagcttctccttcaggtggctactatccccaccctccaagtacacctacacctacacctagtaccccatccacacccactattgtaaccccaccaactactcctatcattgaccctggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="26862" stop="25405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26562" g_stop="26338" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26337" i_stop="25944" i_length="394">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25943" g_stop="25705" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="464" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E295729" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26562" e_stop="26338"/>
          <exon e_start="25943" e_stop="25705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCATCTCTCCCTTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAGGTTCCTTACCCTCCATATATATATTTTGCTATTTGCACTTTAAAGAAAACCATAATGGCTATTTTTATAGATTACCTTAACAATTTCCTAAGCATTGTATTTGCTATTATATGGAAAGCACTATAAATTATAAAATTGTTAAGTATCAAAGACCTTGCCACCTTATATTGGTGTTCCTGTTGTTTTATATAAATTGCGGGAGGCAGCATTCATCCCCACATTATTTGTTAGGTTGGTTTCATAACGGGGTTGTTCAGTACAAAGCGCCCTTTATTTTGCTAGTTACGAGTTTTGGAGTTCTTGCAATTAGATGGAAGCATTTAGTCCTAGACCATTTGGAAAGTGTCTCAAGTTATACTGTCTTCACTCTGACAATTTATTTTGTGGATAACAGGTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACT</genome_strand>
        <mrna_strand>TTCTCCATCTCTCCCTTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395650" ref_strand="+" ref_description="SGN-E395650 [TUS-17-E14](-)">
      <seq>gccgtttacggacataggttatggtaacagaaatggtttttgttttaatttgacagagccattaagttgtgcagaagaaccattaattgttcagcaggtcagggtaatttaggtgggttttgtgaacagatggtctagccaggggatgaagccaaccactcacacactttttcctgattgccagcagtgtgtaaaagacgattcgctttaggttttttttttttagatgaagaagtgagaaacagtcatttcctccccacctccaccctttcaaggaaaagaaaacagccccaccatgaacaacaatttttgttacagacacaaataattatacaggaatatttccatgggtttgctttttgtgtttggaatttaataacaatgctgtatcaatcattttgtcatttgtttgactgaattatagaagaactttccctttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="37670" stop="34300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37370" g_stop="37274" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37273" i_stop="34946" i_length="2328">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34945" g_stop="34604" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="439" r_length="342" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="456"/>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E395650" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37370" e_stop="37274"/>
          <exon e_start="34945" e_stop="34604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTTACAGACATAGTTTATGGTAACAGAAATGGTTTTCTTACTATTTTGACAGAGCCATTAAGTTGTGCAGAAGAACCATTAATTGTACAGCAGGTTAGATTTCCTGAAGACTGATTTCTTTGACGATTGGTACATATTAATTGAATCATGACTTACCTAGGCTATACTAATCAACTTTCTAATAATTGTGGTATCTAGGTTAGCTTGCACACGCCTCGACTAATCCACCTATGTTGAACTAAATTCTAAATAGTGTTAACCTCTTGACCTATCAATTTTTAACATTTTTATCCAACCTGAACGTTTGGACAGATCTTTTTATATTTTAACTGCATAAATACATATTTGAAGTGAAACTTCCATGTTATTGTTGTGATGCTAATTGTAAAGGGGGTTTGTGTATAAGCTGAGCACTGATCTGCTGATCAGACTTCTTGACCTGGGCTCCTCTTACCCAGTCAGTCATCAGACTCTCTGGCTGCTCTCAGCTAAATTATTTGCCAGCAGCTGTTGTTTTGCTGGCATTACCCATCGAGATAAATCTTTGGTGGTGATGGTAGAGTCGACATCTTACTACCCCCTACTTGAAAAACTAACTATATTTGTTGCTTTTATCTCAATGAACATGCACTAATATCAAGTAAAGACAACCTTTCTTATGCATAAACTGATTTGGGCATCTTGCTGTCATATACAGCTGCTTGATATATAGGAGGCCTCTCCACTATATTCCGACAGCTGCTCATGAGAAATAGGTCCTTCACCTGCATGATTGTCATTTTGACTTCCAAAATCACAGGGTTACTGCTGCATGTAACAATTCGTTCTGATGTTTCCCTTCCTTTTTTTGATGGTTTACTCTACACAAAATCTTAGTGCAGAGATAAGTAATCACTTCTTCAATTTACTAGTTGTCACTTGTCTCTCATCATGATGATCTTTTATGGATGCTGAATGAAGTAAATGGCTAAAATGGCATCTTTCACTTTCTTTGTGTACCATGTGCTTTGTTAGGCGATGTTGAGAGTGTAGGGTGCTGCTGACAGTAAAGTTAGGCTGAATAATAGGCACACTTGTCCGAATTTTTGATTTAGCTATCTAAACTAAGCCTATGACCTATTAACACCTAATCTATATTCATAGAATGTTGACCTTTGATGAATATAAATTGATATACTGGTTTTCTCTTCCAACTCTGTATCCCAACTATGGGGAAACTGTCTCCAGATGGACAAGTGAAAAGTAGTATTAGACACATGCTGATGAGCAGCTGAGGTGGCCATAGCATGGGTATCTCATGTATTGAGCATGTGAAATCATTGAAATGAGCTGACACGTAACTTCTCTTCCTCATTTAATTGTTTCTCATCTCTCTTTTCTCTCAATGAAACAAGACTCATCTCTTTACAGTTTCCCCTAAACTCCACCAATGAACAACCACAACTCCCTCTTACATGACAAAAAAAAAAAAAAAAAAAACACTCATGCGAGTGATCTACTTCTTTAGATAAATATTATCCATTGTTTGCATTGCTACACTCAGGAACGATGAAGTCAAAACAGCTACCACGGAACCAGAATTTTTTTTTATACATGCCAGAGTATTACAGCGGAAAAAACACCTCAATTGACTTCAAAATTAGATTAGGTTAGATCTCAAGTTAGTGCACCAAAATGCAGCCAAAAAATGAAAGAGAGTGCAAAGTGAAAGACAATCCAAGCTATGTAGCCATGACCATGAGAACTGTAGTGAAGGACACAACACCTCATTGATCCCTCTCTCTGAACTCTTTAGGTAAGAGTTCATTGGTAACCATTAGGTCTTTCCAGAGTTTGACTTTCCAGGAAGTTCCTCTTTTCGTTGAAGGTTGGCCTTCTACAGTGAAATGGAGAAAAGATCGACAGCAAAGAGGGGAGGAAGATGAATGTTTGAGTGTTTTCTAATTAGTTTTCGAGTCTTAGTTTGGTTTCAGTGGTGGAAAGAGTTGTTTTTCTGGCGGGAGAAGAAGGAACTGCAGGAAGTTGAAACAATAGACCTTTTTCTTTGGCTCAAGAGCTATCTGTTTGGATTGTTGAGTGCCACATGTCTTTCTTTTATTGGCTTCTTTGCCAAGTCAGCTGCATGACCCGCATCCCATATCTTTTACTGTTTCGGTTGCATTTATCTAATAGATACATTTTGAAAATATAAATTAGTTGTACAACACGTCACGAGCTTAGTTTAGGTAGTTAAATGAAAATTCGGACTAGTTTATGGTGTTTGTCTATATATTCAGCCAAAAAGTAAATATTGGTTAAGTTTAAGATAAGAAATATTTCGATATTTAAGTAACTTGTTTTGGAGCTTCCCTCCTTTCAATTAATCTTGCAATTTACCTATTTTCGTTGAAATGTTTGATTGTAAGAACAAAATATCTGCAGGTCAGGGTACTTGAGGTGGCTCTTGTGAACAGATGGTCTAGCCAGGGGATGAAGCCAACCACTCACACACTTCTTCCTGATTGCCAGCAGTGTGTAAAAGACGATCCGCTTTAGGTTTTTTTTCTTTAGATGAAGAAGTGAGAAACAGTCATCTCCTCCCCACCTCCACCCTCTCAAGGAAAAGAAAACAGCCCCACCATGAACAACAATTTTTGTTACAGACACAAATAATTATACAGGAATATTTCCATGGGTTTGCTTCTTGTGTCTGGAATCTAATAACAATGCTGTATCAATCATTTCGTCATTTGTTTGACTGAATTATAGAAGAACTTTCCCTTT</genome_strand>
        <mrna_strand>GCCGTTTACGGACATAGGTTATGGTAACAGAAATGGTTTTTGTTTTAATTTGACAGAGCCATTAAGTTGTGCAGAAGAACCATTAATTGTTCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGGTAATTTAGGTGGGTTTTGTGAACAGATGGTCTAGCCAGGGGATGAAGCCAACCACTCACACACTTTTTCCTGATTGCCAGCAGTGTGTAAAAGACGATTCGCTTTAGGTTTTTTTTTTTTAGATGAAGAAGTGAGAAACAGTCATTTCCTCCCCACCTCCACCCTTTCAAGGAAAAGAAAACAGCCCCACCATGAACAACAATTTTTGTTACAGACACAAATAATTATACAGGAATATTTCCATGGGTTTGCTTTTTGTGTTTGGAATTTAATAACAATGCTGTATCAATCATTTTGTCATTTGTTTGACTGAATTATAGAAGAACTTTCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395651" ref_strand="+" ref_description="SGN-E395651 [TUS-17-E14]">
      <seq>aattactccactccatacttgcccaattcttagccattttcactccattaatctcaacaacaacaagaaaagtttgaagctttctatcagaaaatcaaagtgttgttgttttactctcagttctacacatagttgctgcaaagaccaagaaaaaccccaaaacaatagctacagtatcgacccagatcgacagaagaaccccataataaattgggaagaattttattcttctattcaagaacaagaagagataacccagtacaacgaggaggaggaagaagaagagccggaatttgagcttccagatcattcaggcattagaacaaacatgtggtggactgaactgaaagctgcattgggtcagaggattaatgtggaagggattgtttcttcattaggggttttctctaaagacaagcatttggcgatcccacatgttagtgtgccggatataaggtatattgattgggctgagctaaagaaaagagggtttgaaggtgtggtgtttgataaggataataccattactgttccttattctttgagcttgtggtctcctttagcttcttctattgatcagtgcaaatctctgtttggtaacaatattgcagtgtatagcaactcagcaggattagatgaatatgaccctgatggtagaaaggccagaattctcgaacgtgctattggaattaaagtcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="38966" stop="37579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38666" g_stop="38039" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38038" i_stop="37951" i_length="88">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37950" g_stop="37879" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="701" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E395651" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38666" e_stop="38039"/>
          <exon e_start="37950" e_stop="37879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACTCCACTCCATACTTGCCCAATTCTTAGCCATTTTCACTCCATTAATCTCAACAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTTGTTGTTTTACTCTCAGTTCTACACATAGTTGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACAGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAA-TTTATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAAGAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGTGGACTGAACTGAAAGCTGCATTGGGTCAGAGGATTAATGTGGAAGGGATTGTTTCTTCATTAGGGGTTTTCTCTAAAGACAAGCATTTGGCGATCCCACATGTTAGTGTGCCGGATATAAGGTATATTGATTGGGCTGAGCTAAAGAAAAGAGGGTTTGAAGGTGTGGTGTTTGATAAGGATAATACCATTACTGTTCCTTATTCTTTGAGCTTGTGGTCTCCTTTAGCTTCTTCTATTGATCAGTGCAAATCTCTGTTTGGTAACAATATTGCAGTGTATAGCAACTCAGCAGGTAATTCAGGTTTTCGTGATTGGTTTGATTTCCTTTTTGGGTTTGAAAAATATTGGTCTCAGTATTTTGTTCATTTGTGAATTTGTAGGATTAGATGAATATGACCCTGATGGTAGAAAGGCCAGAATTCTCGAACGTGCTATTGGAATTAAAGTCATTA</genome_strand>
        <mrna_strand>AATTACTCCACTCCATACTTGCCCAATTCTTAGCCATTTTCACTCCATTAATCTCAACAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTTGTTGTTTTACTCTCAGTTCTACACATAGTTGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACAGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAATTTTATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAAGAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGTGGACTGAACTGAAAGCTGCATTGGGTCAGAGGATTAATGTGGAAGGGATTGTTTCTTCATTAGGGGTTTTCTCTAAAGACAAGCATTTGGCGATCCCACATGTTAGTGTGCCGGATATAAGGTATATTGATTGGGCTGAGCTAAAGAAAAGAGGGTTTGAAGGTGTGGTGTTTGATAAGGATAATACCATTACTGTTCCTTATTCTTTGAGCTTGTGGTCTCCTTTAGCTTCTTCTATTGATCAGTGCAAATCTCTGTTTGGTAACAATATTGCAGTGTATAGCAACTCAGCAG........................................................................................GATTAGATGAATATGACCCTGATGGTAGAAAGGCCAGAATTCTCGAACGTGCTATTGGAATTAAAGTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254538" ref_strand="+" ref_description="SGN-E254538 [cLEG-29-M6]">
      <seq>tgtaatcgatgaatacaataattgttattataatatataaaacccataaccaataccagatttgagctctgattatgcagtctacctcaattactccactccatacttgcccaattcttagccattttcactccattaatctcaacaacaacaagaaaagtttgaagctttctatcagaaaatcaaagtgttgttgttttactctcagttctacacatagttgctgcaaagaccaagaaaaaccccaaaacaatagctacagtatcgacccagatcgacagaagaaccccataataaattgggaagaattttattcttctattcaagaacaagaagagataacccagtacaacgaggaggaggaagaagaagagccggaatttgagcttccagatcattcaggcattagaacaaacatgtggtggactgaactgaaagctgcattgggtcagaggattaatgtggaagggattgtttcttcattaggggttttctctaaagacaagcatttggcgatcccacatgttagtgtgccggatataaggtatattgattgggctgagctaaagaaaagagggtttgaaggtgtggtgtttgataaggataataccattactgttccttattctttgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="39054" stop="37821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38754" g_stop="38121" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E254538" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38754" e_stop="38121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATCGATGAATACAATAATTGTTATTATAATATATAAAACCCATAACCAATACCAGATTTGAGCTCTGATTATGCAGTCTACCTCAATTACTCCACTCCATACTTGCCCAATTCTTAGCCATTTTCACTCCATTAATCTCAACAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTTGTTGTTTTACTCTCAGTTCTACACATAGTTGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACAGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAA-TTTATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAAGAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGTGGACTGAACTGAAAGCTGCATTGGGTCAGAGGATTAATGTGGAAGGGATTGTTTCTTCATTAGGGGTTTTCTCTAAAGACAAGCATTTGGCGATCCCACATGTTAGTGTGCCGGATATAAGGTATATTGATTGGGCTGAGCTAAAGAAAAGAGGGTTTGAAGGTGTGGTGTTTGATAAGGATAATACCATTACTGTTCCTTATTCTTTGAGC</genome_strand>
        <mrna_strand>TGTAATCGATGAATACAATAATTGTTATTATAATATATAAAACCCATAACCAATACCAGATTTGAGCTCTGATTATGCAGTCTACCTCAATTACTCCACTCCATACTTGCCCAATTCTTAGCCATTTTCACTCCATTAATCTCAACAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTTGTTGTTTTACTCTCAGTTCTACACATAGTTGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACAGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAATTTTATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAAGAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGTGGACTGAACTGAAAGCTGCATTGGGTCAGAGGATTAATGTGGAAGGGATTGTTTCTTCATTAGGGGTTTTCTCTAAAGACAAGCATTTGGCGATCCCACATGTTAGTGTGCCGGATATAAGGTATATTGATTGGGCTGAGCTAAAGAAAAGAGGGTTTGAAGGTGTGGTGTTTGATAAGGATAATACCATTACTGTTCCTTATTCTTTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340562" ref_strand="+" ref_description="SGN-E340562 [cTOF-1-A23]">
      <seq>tgattatgcagtctacctcaattactccactccatacttgcccaattcttagccattttcactccattaatctcaacaacaacaagaaaagtttgaagctttctatcagaaaatcaaagtgttgttgttttactctcagttctacacatagttgctgcaaagaccaagaaaaaccccaaaacaatagctacagtatcgacccagatcgacagaagaaccccataataaattgggaagaattttattcttctattcaagaacaagaagagataacccagtacaacgaggaggaggaagaagaagagccggaatttgagcttccagatcattcaggcattagaacaaacatgtggtggactgaactgaaagctgcattgggtcagaggattaatgtggaagggattgtttcttcattaggggttttctctaaagacaagcatttggcgatcccacatgttagtgtgccggatataaggtatattgattgggctgagctaaagaaaagagggtttgaaggtgtggtgtttgataaggataataccattactgttccttattctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="38985" stop="37824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38685" g_stop="38124" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E340562" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38685" e_stop="38124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTATGCAGTCTACCTCAATTACTCCACTCCATACTTGCCCAATTCTTAGCCATTTTCACTCCATTAATCTCAACAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTTGTTGTTTTACTCTCAGTTCTACACATAGTTGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACAGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAA-TTTATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAAGAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGTGGACTGAACTGAAAGCTGCATTGGGTCAGAGGATTAATGTGGAAGGGATTGTTTCTTCATTAGGGGTTTTCTCTAAAGACAAGCATTTGGCGATCCCACATGTTAGTGTGCCGGATATAAGGTATATTGATTGGGCTGAGCTAAAGAAAAGAGGGTTTGAAGGTGTGGTGTTTGATAAGGATAATACCATTACTGTTCCTTATTCTTTG</genome_strand>
        <mrna_strand>TGATTATGCAGTCTACCTCAATTACTCCACTCCATACTTGCCCAATTCTTAGCCATTTTCACTCCATTAATCTCAACAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTTGTTGTTTTACTCTCAGTTCTACACATAGTTGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACAGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAATTTTATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAAGAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGTGGACTGAACTGAAAGCTGCATTGGGTCAGAGGATTAATGTGGAAGGGATTGTTTCTTCATTAGGGGTTTTCTCTAAAGACAAGCATTTGGCGATCCCACATGTTAGTGTGCCGGATATAAGGTATATTGATTGGGCTGAGCTAAAGAAAAGAGGGTTTGAAGGTGTGGTGTTTGATAAGGATAATACCATTACTGTTCCTTATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270102" ref_strand="+" ref_description="SGN-E270102 [cLEM-7-H19]">
      <seq>gatgaatacaataattgttattataatatataaaacccataggcaataccagatttgagctctgattatgcagtctacctcaattactccactccatacttgcccaattcttagccattttcactccattaatctcaacaacaacaagaaaagtttgaagctttctatcagaaaatcaaagtgttgttgttttactctcagttctacacatagttgctgcaaagaccaagaaaaaccccaaaacaatagctacagtatcgacccagatcgacagaagaaccccataataaattgggaagaattttattcttctattcaagaacaagaagagataacccagtacaacgaggaggaggaagaagaagagccggaatttgagcttccagatcattcaggcattagaacaaacatgtggtggactgaactgaaagctgcattgggtcagaggattaatgtggaagggattgtttcttcattaggggttttctctaaagacaagcatttggcgatcccacatgttagtgtgccggatataaggtatattgattgggctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="39047" stop="37891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38747" g_stop="38191" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E270102" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38747" e_stop="38191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATACAATAATTGTTATTATAATATATAAAACCCATAACCAATACCAGATTTGAGCTCTGATTATGCAGTCTACCTCAATTACTCCACTCCATACTTGCCCAATTCTTAGCCATTTTCACTCCATTAATCTCAACAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTTGTTGTTTTACTCTCAGTTCTACACATAGTTGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACAGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAA-TTTATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAAGAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGTGGACTGAACTGAAAGCTGCATTGGGTCAGAGGATTAATGTGGAAGGGATTGTTTCTTCATTAGGGGTTTTCTCTAAAGACAAGCATTTGGCGATCCCACATGTTAGTGTGCCGGATATAAGGTATATTGATTGGGCTGAGCT</genome_strand>
        <mrna_strand>GATGAATACAATAATTGTTATTATAATATATAAAACCCATAGGCAATACCAGATTTGAGCTCTGATTATGCAGTCTACCTCAATTACTCCACTCCATACTTGCCCAATTCTTAGCCATTTTCACTCCATTAATCTCAACAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTTGTTGTTTTACTCTCAGTTCTACACATAGTTGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACAGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAATTTTATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAAGAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGTGGACTGAACTGAAAGCTGCATTGGGTCAGAGGATTAATGTGGAAGGGATTGTTTCTTCATTAGGGGTTTTCTCTAAAGACAAGCATTTGGCGATCCCACATGTTAGTGTGCCGGATATAAGGTATATTGATTGGGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210246" ref_strand="+" ref_description="SGN-E210246 [cLEC-35-A3]">
      <seq>tactccactccatacttgcccaattcttagccattttcactccattaatctcaacaacaacaagaaaagtttgaagctttctatcagaaaatcaaagtgttgttgttttactctcagttctacacatagttgctgcaaagaccaagaaaaaccccaaaacaatagctacagtatcgacccagatcgacagaagaaccccataataaattgggaagaattttattcttctattcaagaacaagaagagataacccagtacaacgaggaggaggaagaagaagagccggaatttgagcttccagatcattcaggcattagaacaaacatgtggtggactgaactgaaagctgcattgggtcagaggattaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="38963" stop="37993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38663" g_stop="38293" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E210246" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38663" e_stop="38293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCCACTCCATACTTGCCCAATTCTTAGCCATTTTCACTCCATTAATCTCAACAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTTGTTGTTTTACTCTCAGTTCTACACATAGTTGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACAGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAA-TTTATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAAGAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGTGGACTGAACTGAAAGCTGCATTGGGTCAGAGGATTAATGT</genome_strand>
        <mrna_strand>TACTCCACTCCATACTTGCCCAATTCTTAGCCATTTTCACTCCATTAATCTCAACAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTTGTTGTTTTACTCTCAGTTCTACACATAGTTGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACAGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAATTTTATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAAGAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGTGGACTGAACTGAAAGCTGCATTGGGTCAGAGGATTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253928" ref_strand="+" ref_description="SGN-E253928 [cLEG-28-D5]">
      <seq>aatcgatgaatacaataattgttatgataatatataaaacccattaccaataccagatttgagctctgattatgcagtctacctcaatgactgcactcgatactggcccaaggattagccattttcactccattaatctcagcaacaacaagaaaagtttgaagctttctatcagaaaatcaaagtgtagttgttttactctcaggtctacacatagtgtgctgcaaagaccaagaaaaaccccaaaacaatagctacggtatcgacccagatcgacagaagaaccccataataaattgggaagaattgtattcttctattcaagaacaagaagagataacccagtacaacgaggaggaggaagaacaagagccggaatttgagcttccagatcattcaggcattagaacaaacatgtgggggactgaactgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="39051" stop="38018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38751" g_stop="38318" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E253928" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38751" e_stop="38318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGATGAATACAATAATTGTTATTATAATATATAAAACCCATAACCAATACCAGATTTGAGCTCTGATTATGCAGTCTACCTCAATTACTCCACTCCATACTTGCCCAATTCTTAGCCATTTTCACTCCATTAATCTCAACAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTTGTTGTTTTACTCTCAGTTCTACACATAGT-TGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACAGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAATT-TATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAAGAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGTGGACTGAACTGAAAG</genome_strand>
        <mrna_strand>AATCGATGAATACAATAATTGTTATGATAATATATAAAACCCATTACCAATACCAGATTTGAGCTCTGATTATGCAGTCTACCTCAATGACTGCACTCGATACTGGCCCAAGGATTAGCCATTTTCACTCCATTAATCTCAGCAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTAGTTGTTTTACTCTCAGGTCTACACATAGTGTGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACGGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAATTGTATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAACAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGGGGACTGAACTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203903" ref_strand="+" ref_description="SGN-E203903 [cLEC-17-L5]">
      <seq>atatttcagctaatttgaaaaaaaatggctaattctcatttacttttaatttccattgtattaatgggcaatttagtggctgtattagcagctggtaattttaatgaccttacagaaatcacttggggtgatggacgtggtaaaatattagatggaggtaaaggtctctctttgtcacttgataattattccgggtcgggttttcaatcgaaaaatgaatatctctacggaagattcgacatgcaactcaaactcgtccctaaaaactctgctggcactgtcaccacgttctttctatcgtcacaaggagaaggacacgatgagatcgatttcgagttcttgggaaatgtgactggtgagccttatacggtacacaccaatgtttattctcaaggaaaaggaaacaaagaacaacaatttcacctttggttcgatccaactgcagcatttcacacttacaccattgtttggaacgctaaccgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="45994" stop="47169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46294" g_stop="46587" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46588" i_stop="46678" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46679" g_stop="46869" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="485" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E203903" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46294" e_stop="46587"/>
          <exon e_start="46679" e_stop="46869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTCAGCTAATTTGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTTGTAAGTCGTTATTCAACTCTTTTTTTTCTCATGAATTATTTTTGAATTAATTGATTGTAAATAACTGCTACGTTTAAAAATATTTTTTTAGCTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCAT</genome_strand>
        <mrna_strand>ATATTTCAGCTAATTTGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTT...........................................................................................CTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393185" ref_strand="+" ref_description="SGN-E393185 [TUS-38-C7]">
      <seq>tatttcagctaatttgaaaaaaatggctaattctcatttacttttaatttccattgtattaatgggcaatttagtggctgtattagcagctggtaattttaatgaccttacagaaatcacttggggtgatggacgtggtaaaatattagatggaggtaaaggtctctctttgtcacttgataattattccgggtcgggttttcaatcgaaaaatgaatatctctacggaagattcgacatgcaactcaaactcgtccctaaaaactctgctggcactgtcaccacgttctttctatcgtcacaaggagaaggacacgatgagatcgatttcgagttcttgggaaatgtgactggtgagccttatacggtacacaccaatgtttattctcaaggaaaaggaaacaaagaacaacaatttcacctttggttcgatccaactgcagcatttcacacttacaccattgtttggaacgctaaccgcatagtgtaaggcgctatacttgtttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="45995" stop="47190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46295" g_stop="46587" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46588" i_stop="46678" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46679" g_stop="46888" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="502" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E393185" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46295" e_stop="46587"/>
          <exon e_start="46679" e_stop="46888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCAGCTAATTTGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTTGTAAGTCGTTATTCAACTCTTTTTTTTCTCATGAATTATTTTTGAATTAATTGATTGTAAATAACTGCTACGTTTAAAAATATTTTTTTAGCTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGTGTAAGGCGCTATACTT</genome_strand>
        <mrna_strand>TATTTCAGCTAATTTGA-AAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTT...........................................................................................CTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGTGTAAGGCGCTATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205822" ref_strand="+" ref_description="SGN-E205822 [cLEC-20-C16]">
      <seq>atttcagctaatttgaaaaaaatggctaattctcatttacttttaatttccattgtattaatgggcaatttagtggctgtattagcagctggtaattttaatgaccttacagaaatcacttggggtgatggacgtggtaaaatattagatggaggtaaaggtctctctttgtcacttgataattattccgggtcgggttttcaatcgaaaaatgaatatctctacggaagattcgacatgcaactcaaactcgtccctaaaaactctgctggcactgtcaccacgttctttctatcgtcacaaggagaaggacacgatgagatcgatttcgagttcttgggaaatgtgactggtgagccttatacggtacacaccaatgtttattctcaaggaaaaggaaacaaagaacaacaatttcacctttggttcgatccaactgcagcatttcacacttacaccattgtttggaacgctaaccgcatagtgtaaggcgctatacttgtttttggtggatcagattccaattagagtatacaacaaccatgagagcattggaattgcataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="45996" stop="48007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46296" g_stop="46587" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46588" i_stop="46678" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46679" g_stop="46888" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="501" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46889" i_stop="47641" i_length="753">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47642" g_stop="47707" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="567" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E205822" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46296" e_stop="46587"/>
          <exon e_start="46679" e_stop="46888"/>
          <exon e_start="47642" e_stop="47707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAGCTAATTTGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTTGTAAGTCGTTATTCAACTCTTTTTTTTCTCATGAATTATTTTTGAATTAATTGATTGTAAATAACTGCTACGTTTAAAAATATTTTTTTAGCTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGTGTAAGGCGCTATACTTGTACGTAATTTTTTTTCAAAAAAAATGACATATTTCTTATATGAACTTTTCATTTACCCATTTATTCATGATTATAGTCTCACACAAATAATAAAGCATATTTAAAATGGCATGTTTCGGAGGTCGCTACTAAAAAAGTGAATTTACAATGGATGAAATCCATTAAAAATTGAATCGACCGGACGTCCATGGAAACTCATATTTCTTTATTAGTATGATTTAGAGTCACACAAATTTATTACATATCTGATACTATAAGTTTTAAAAATCTTATTTTTTATCCTCAAACTTTGTCACAATCAAACTGCTCCACGTCAAGGGTGGATCTAGACTTCGAGTATCGATCATCACCTATAAGTTCACGTGAACTTAATAGTTTTTCAAAAGAATATAATAAATAGTAATTAATTATAAATTCAATCGTCCTATAGTGATTTGAGATATCTATACAAATTTATTAATTTCAAATTTCTAATCTGTCAATGTGATCATATAAATTGAAACAAATGGAGTACATAAGAGGGGGCGCAGAGCCAATGGCATCATTAGGACAACACTATTTAACTTTTAAACCTTTTTTTTAATGTATATATAGTAAATACTGAACTCCTTCGATCTATGTGCTTACGTATTCATTTTTGATCTTCTTAATGATAATTCTGACTCCCGCGCTACTAGTAATTGGAGTAACTTCTTTATTACAGTGATATGTTTACCTTGGTAGATACTTACATGTTTGATTATGAAAATCAGGTTTTTGGTGGATCAGATTCCAATTAGAGTATACAACAACCATGAGAGCATTGGAATTGCATACCC</genome_strand>
        <mrna_strand>ATTTCAGCTAATTTGAA-AAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTT...........................................................................................CTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGTGTAAGGCGCTATACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGGTGGATCAGATTCCAATTAGAGTATACAACAACCATGAGAGCATTGGAATTGCATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200686" ref_strand="+" ref_description="SGN-E200686 [cLEC-9-J5]">
      <seq>tttcagctaatttgaaaaaaaatggctaattctcatttacttttaatttccattgtattaatgggcaatttagtggctgtattagcagctggtaattttaatgaccttacagaaatcacttggggtgatggacgtggtaaaatattagatggaggtaaaggtctctctttgtcacttgataattattccgggtcgggttttcaatcgaaaaatgaatatctctacggaagattcgacatgcaactcaaactcgtccctaaaaactctgctggcactgtcaccacgttctttctatcgtcacaaggagaaggacacgatgagatcgatttcgagttcttgggaaatgtgactggtgagcccttatacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="45997" stop="47053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46297" g_stop="46587" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46588" i_stop="46678" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46679" g_stop="46753" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="367" r_length="76" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E200686" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46297" e_stop="46587"/>
          <exon e_start="46679" e_stop="46753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCTAATTTGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTTGTAAGTCGTTATTCAACTCTTTTTTTTCTCATGAATTATTTTTGAATTAATTGATTGTAAATAACTGCTACGTTTAAAAATATTTTTTTAGCTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAG-CCTTATACG</genome_strand>
        <mrna_strand>TTTCAGCTAATTTGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTT...........................................................................................CTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCCTTATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213127" ref_strand="+" ref_description="SGN-E213127 [cLEC-72-I3]">
      <seq>attcgaaaaaaaatggctaattctcatttacttttaatttccattgtattaatgggcaatttagtggctgtattagcagctggtaattttaatgaccttacagaaatcacttggggtgatggacgtggtaaaatattagatggaggtaaaggtctctctttgtcacttgataattattccgggtcgggttttcaatcgaaaaatgaatatctctacggaagattcgacatgcaactcaaactcgtccctaaaaactctgctggcactgtcaccacgttctttctatcgtcacaaggagaaggacacgatgagatcgatttcgagttcttgggaaatgtgactggtgagccttatacggtacacaccaatgtttattctcaaggaaaaggaaacaaagaacaacaatttcacctttggttcgatccaactgcagcatttcacacttacaccattgtttggaacgctaaccgcatagtgtttttggtggatcagattccaattagagtatacaacaaccatgagagcattggaattgcataccccaaaagtcaaccaatgaaagtctattgtagtttatggaatgcagatgaatgggctacacaaggtggtagagtcaaaactgattggtcacaagcaccatttactgcctattataggaacattaacattgatggctgcgtcgttaaatcaggcgcttcctcatgtgcctcacggtctactgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="46006" stop="48190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46306" g_stop="46587" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46588" i_stop="46678" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46679" g_stop="46872" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="476" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46873" i_stop="47641" i_length="769">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47642" g_stop="47890" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="725" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E213127" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46306" e_stop="46587"/>
          <exon e_start="46679" e_stop="46872"/>
          <exon e_start="47642" e_stop="47890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTTGTAAGTCGTTATTCAACTCTTTTTTTTCTCATGAATTATTTTTGAATTAATTGATTGTAAATAACTGCTACGTTTAAAAATATTTTTTTAGCTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGTGTAAGGCGCTATACTTGTACGTAATTTTTTTTCAAAAAAAATGACATATTTCTTATATGAACTTTTCATTTACCCATTTATTCATGATTATAGTCTCACACAAATAATAAAGCATATTTAAAATGGCATGTTTCGGAGGTCGCTACTAAAAAAGTGAATTTACAATGGATGAAATCCATTAAAAATTGAATCGACCGGACGTCCATGGAAACTCATATTTCTTTATTAGTATGATTTAGAGTCACACAAATTTATTACATATCTGATACTATAAGTTTTAAAAATCTTATTTTTTATCCTCAAACTTTGTCACAATCAAACTGCTCCACGTCAAGGGTGGATCTAGACTTCGAGTATCGATCATCACCTATAAGTTCACGTGAACTTAATAGTTTTTCAAAAGAATATAATAAATAGTAATTAATTATAAATTCAATCGTCCTATAGTGATTTGAGATATCTATACAAATTTATTAATTTCAAATTTCTAATCTGTCAATGTGATCATATAAATTGAAACAAATGGAGTACATAAGAGGGGGCGCAGAGCCAATGGCATCATTAGGACAACACTATTTAACTTTTAAACCTTTTTTTTAATGTATATATAGTAAATACTGAACTCCTTCGATCTATGTGCTTACGTATTCATTTTTGATCTTCTTAATGATAATTCTGACTCCCGCGCTACTAGTAATTGGAGTAACTTCTTTATTACAGTGATATGTTTACCTTGGTAGATACTTACATGTTTGATTATGAAAATCAGGTTTTTGGTGGATCAGATTCCAATTAGAGTATACAACAACCATGAGAGCATTGGAATTGCATACCCCAAAAGTCAACCAATGAAAGTCTATTGTAGTTTATGGAATGCAGATGAATGGGCTACACAAGGTGGTAGAGTCAAAACTGATTGGTCACAAGCACCATTTACTGCCTATTATAGGAACATTAACATTGATGGCTGCGTCGTTAAATCAGGCGCTTCCTCATGTGCCTCACGGTCTACTGAATC</genome_strand>
        <mrna_strand>ATTCGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTT...........................................................................................CTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGGTGGATCAGATTCCAATTAGAGTATACAACAACCATGAGAGCATTGGAATTGCATACCCCAAAAGTCAACCAATGAAAGTCTATTGTAGTTTATGGAATGCAGATGAATGGGCTACACAAGGTGGTAGAGTCAAAACTGATTGGTCACAAGCACCATTTACTGCCTATTATAGGAACATTAACATTGATGGCTGCGTCGTTAAATCAGGCGCTTCCTCATGTGCCTCACGGTCTACTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203901" ref_strand="+" ref_description="SGN-E203901 [cLEC-17-L1]">
      <seq>attcgaaaaaaaatggctaattctcatttacttttaatttccattgtattaatgggcaatttagtggctgtattagcagctggtaattttaatgaccttacagaaatcacttggggtgatggacgtggtaaaatattagatggaggtaaaggtctctctttgtcacttgataattattccgggtcgggttttcaatcgaaaaatgaatatctctacggaagattcgacatgcaactcaaactcgtccctaaaaactctgctggcactgtcaccacgttctttctatcgtcacaaggagaaggacacgatgagatcgatttcgagttcttgggaaatgtgactggtgagccttatacggtacacaccaatgtttattctcaaggaaaaggaaacaaagaacaacaatttcacctttggttcgatccaactgcagcatttcacacttacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="46006" stop="47146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46306" g_stop="46587" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46588" i_stop="46678" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46679" g_stop="46846" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="450" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E203901" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46306" e_stop="46587"/>
          <exon e_start="46679" e_stop="46846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTTGTAAGTCGTTATTCAACTCTTTTTTTTCTCATGAATTATTTTTGAATTAATTGATTGTAAATAACTGCTACGTTTAAAAATATTTTTTTAGCTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACC</genome_strand>
        <mrna_strand>ATTCGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTT...........................................................................................CTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377882" ref_strand="+" ref_description="SGN-E377882 [TUS-20-D2]">
      <seq>tttctatcgtcacaaggagaaggacacgatgagatcgatttcgagttcttgggaaatgtgactggtgagccttatacggtacacaccaatgtttattctcaaggaaaaggaaacaaagaacaacaatttcacctttggttcgatccaactgcagcatttcacacttacaccattgtttggaacgctaaccgcatagtgtaaggcgctatacttgtacgtaattttttttcaaaaaaaatgacatatttcttatatgaacttttcatttacccatttattcatgattatagtctcacacaaataataaagcatatttaaaatggcatgtttcggaggtcgctactaaaaaagtgaatttacaatggatgaaatccattaaaaattgaatcgaccggacgtccatggaaactcatatttctttattagtatgatttagagtcacacaaatttattacatatctgatactataagttttaaaaatcttattttttatcctcaaactttgtcacaatcaaactgctccacgtcaagggtggatctagacttcgagtatcgatcatcacctataagttcacgtgaacttaatagtttttcaaaagaatataataaatagtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="46379" stop="47593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46585" g_stop="46587" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46588" i_stop="46678" i_length="91">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46679" g_stop="47293" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="618" r_length="615" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E377882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46585" e_stop="46587"/>
          <exon e_start="46679" e_stop="47293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAAGTCGTTATTCAACTCTTTTTTTTCTCATGAATTATTTTTGAATTAATTGATTGTAAATAACTGCTACGTTTAAAAATATTTTTTTAGCTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGTGTAAGGCGCTATACTTGTACGTAATTTTTTTTCAAAAAAAATGACATATTTCTTATATGAACTTTTCATTTACCCATTTATTCATGATTATAGTCTCACACAAATAATAAAGCATATTTAAAATGGCATGTTTCGGAGGTCGCTACTAAAAAAGTGAATTTACAATGGATGAAATCCATTAAAAATTGAATCGACCGGACGTCCATGGAAACTCATATTTCTTTATTAGTATGATTTAGAGTCACACAAATTTATTACATATCTGATACTATAAGTTTTAAAAATCTTATTTTTTATCCTCAAACTTTGTCACAATCAAACTGCTCCACGTCAAGGGTGGATCTAGACTTCGAGTATCGATCATCACCTATAAGTTCACGTGAACTTAATAGTTTTTCAAAAGAATATAATAAATAGTAAT</genome_strand>
        <mrna_strand>TTT...........................................................................................CTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGTGTAAGGCGCTATACTTGTACGTAATTTTTTTTCAAAAAAAATGACATATTTCTTATATGAACTTTTCATTTACCCATTTATTCATGATTATAGTCTCACACAAATAATAAAGCATATTTAAAATGGCATGTTTCGGAGGTCGCTACTAAAAAAGTGAATTTACAATGGATGAAATCCATTAAAAATTGAATCGACCGGACGTCCATGGAAACTCATATTTCTTTATTAGTATGATTTAGAGTCACACAAATTTATTACATATCTGATACTATAAGTTTTAAAAATCTTATTTTTTATCCTCAAACTTTGTCACAATCAAACTGCTCCACGTCAAGGGTGGATCTAGACTTCGAGTATCGATCATCACCTATAAGTTCACGTGAACTTAATAGTTTTTCAAAAGAATATAATAAATAGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233106" ref_strand="+" ref_description="SGN-E233106 [cLED-6-H22]">
      <seq>tttctatcgtcacaaggagaaggacacgatgagatcgatttcgagttcttgggaaatgtgactggtgagccttatacggttcacaccaatgtttattctcaaggaaaaggaaacaaagaacaacaatttcacctttggttcgatccaactgcagcatttcacacttacaccattgtttggaacgctaaccgcatagtgtaaggcgctatacttgtacgtaattttttttcaaaaaaaatgacatatttcttatatgaacttttcatttacccatttattcatgattatagtctcacacaaataataaagcatatttaaaatggcatgtttcggaggtcgctactaaaaaagtgaatttacaatggatgaaatccattaaaaattgaatcgaccggacgtccatggaaactcatatttctttattagtatgatttagagtcacacaaatttattacatatctgatactataagttttaaaaatcttattttttatcctcaaactttgtcacaatcaaactgctccacgtcaagggtggatctagacttcgagtatcgatcatcacctataagttcacgtgaacttaatagtttttcaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="46379" stop="47577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46585" g_stop="46587" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46588" i_stop="46678" i_length="91">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46679" g_stop="47277" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="602" r_length="599" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E233106" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46585" e_stop="46587"/>
          <exon e_start="46679" e_stop="47277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAAGTCGTTATTCAACTCTTTTTTTTCTCATGAATTATTTTTGAATTAATTGATTGTAAATAACTGCTACGTTTAAAAATATTTTTTTAGCTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGTGTAAGGCGCTATACTTGTACGTAATTTTTTTTCAAAAAAAATGACATATTTCTTATATGAACTTTTCATTTACCCATTTATTCATGATTATAGTCTCACACAAATAATAAAGCATATTTAAAATGGCATGTTTCGGAGGTCGCTACTAAAAAAGTGAATTTACAATGGATGAAATCCATTAAAAATTGAATCGACCGGACGTCCATGGAAACTCATATTTCTTTATTAGTATGATTTAGAGTCACACAAATTTATTACATATCTGATACTATAAGTTTTAAAAATCTTATTTTTTATCCTCAAACTTTGTCACAATCAAACTGCTCCACGTCAAGGGTGGATCTAGACTTCGAGTATCGATCATCACCTATAAGTTCACGTGAACTTAATAGTTTTTCAAAAGAA</genome_strand>
        <mrna_strand>TTT...........................................................................................CTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTTCACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGTGTAAGGCGCTATACTTGTACGTAATTTTTTTTCAAAAAAAATGACATATTTCTTATATGAACTTTTCATTTACCCATTTATTCATGATTATAGTCTCACACAAATAATAAAGCATATTTAAAATGGCATGTTTCGGAGGTCGCTACTAAAAAAGTGAATTTACAATGGATGAAATCCATTAAAAATTGAATCGACCGGACGTCCATGGAAACTCATATTTCTTTATTAGTATGATTTAGAGTCACACAAATTTATTACATATCTGATACTATAAGTTTTAAAAATCTTATTTTTTATCCTCAAACTTTGTCACAATCAAACTGCTCCACGTCAAGGGTGGATCTAGACTTCGAGTATCGATCATCACCTATAAGTTCACGTGAACTTAATAGTTTTTCAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356519" ref_strand="+" ref_description="SGN-E356519 [cTOS-21-I13]">
      <seq>cgagttcttgggaaatgtgactggtgagccttatacggtacacaccaatgtttattctcaaggaaaaggaaacaaagaacaacaatttcacctttggttcgatccaactgcagcatttcacacttacaccattgtttggaacgctaaccgcatagtgtttttggtggatcagattccaattagagtatacaacaaccatgagagcattggaattgcataccccaaaagtcaaccaatgaaagtctattgtagtttatggaatgcagatgaatgggctacacaaggtggtagagtcaaaactgattggtcacaagcaccatttactgcctattataggaacattaacattgatggctgcgtcgttaaatcaggcgcttcctcatgtgcctcacggtctactgaaatccacgaacagtgctaagtcgggggagacacatgagcttgatgctaagggtcggaacagggtccgatgggtacagagcaaacatatgggttataattattgcgcggattctaagagggttcctcanggatattcacaagagtgtaaacgatcaagggtttaaaaaatcgaattaaatttaattacgtatggttcgaaactcgatgaatatgtaagctgggtatgcgattgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="46417" stop="48419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46717" g_stop="46872" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46873" i_stop="47641" i_length="769">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47642" g_stop="48125" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="641" r_length="485" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E356519" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46717" e_stop="46872"/>
          <exon e_start="47642" e_stop="48125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGTGTAAGGCGCTATACTTGTACGTAATTTTTTTTCAAAAAAAATGACATATTTCTTATATGAACTTTTCATTTACCCATTTATTCATGATTATAGTCTCACACAAATAATAAAGCATATTTAAAATGGCATGTTTCGGAGGTCGCTACTAAAAAAGTGAATTTACAATGGATGAAATCCATTAAAAATTGAATCGACCGGACGTCCATGGAAACTCATATTTCTTTATTAGTATGATTTAGAGTCACACAAATTTATTACATATCTGATACTATAAGTTTTAAAAATCTTATTTTTTATCCTCAAACTTTGTCACAATCAAACTGCTCCACGTCAAGGGTGGATCTAGACTTCGAGTATCGATCATCACCTATAAGTTCACGTGAACTTAATAGTTTTTCAAAAGAATATAATAAATAGTAATTAATTATAAATTCAATCGTCCTATAGTGATTTGAGATATCTATACAAATTTATTAATTTCAAATTTCTAATCTGTCAATGTGATCATATAAATTGAAACAAATGGAGTACATAAGAGGGGGCGCAGAGCCAATGGCATCATTAGGACAACACTATTTAACTTTTAAACCTTTTTTTTAATGTATATATAGTAAATACTGAACTCCTTCGATCTATGTGCTTACGTATTCATTTTTGATCTTCTTAATGATAATTCTGACTCCCGCGCTACTAGTAATTGGAGTAACTTCTTTATTACAGTGATATGTTTACCTTGGTAGATACTTACATGTTTGATTATGAAAATCAGGTTTTTGGTGGATCAGATTCCAATTAGAGTATACAACAACCATGAGAGCATTGGAATTGCATACCCCAAAAGTCAACCAATGAAAGTCTATTGTAGTTTATGGAATGCAGATGAATGGGCTACACAAGGTGGTAGAGTCAAAACTGATTGGTCACAAGCACCATTTACTGCCTATTATAGGAACATTAACATTGATGGCTGCGTCGTTAAATCAGGCGCTTCCTCATGTGCCTCACGGTCTACTG-AATCCACGAACAGTGCTAAGTCGTGGGAGACACATGAGCTTGATGCTAAGGGTCGGAACAGGGTCCGATGGGTACAGAGCAAACATATGGTTTATAATTATTGCGCGGATTCTAAGAGGTTTCCTCAAGGATATTCACAAGAGTGTAAACGATCAAGGTTTTAAAAAATCGAATTTAATTTAATTACGTATGGTTCGAAACTCGATGAATATGTAAGCTGGTTATGCGATTGATTGTTT</genome_strand>
        <mrna_strand>CGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGGTGGATCAGATTCCAATTAGAGTATACAACAACCATGAGAGCATTGGAATTGCATACCCCAAAAGTCAACCAATGAAAGTCTATTGTAGTTTATGGAATGCAGATGAATGGGCTACACAAGGTGGTAGAGTCAAAACTGATTGGTCACAAGCACCATTTACTGCCTATTATAGGAACATTAACATTGATGGCTGCGTCGTTAAATCAGGCGCTTCCTCATGTGCCTCACGGTCTACTGAAATCCACGAACAGTGCTAAGTCGGGGGAGACACATGAGCTTGATGCTAAGGGTCGGAACAGGGTCCGATGGGTACAGAGCAAACATATGGGTTATAATTATTGCGCGGATTCTAAGAGGGTTCCTCANGGATATTCACAAGAGTGTAAACGATCAAGGGTTTAAAAAATCGAATTAAATTTAATTACGTATGGTTCGAAACTCGATGAATATGTAAGCTGGGTATGCGATTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377881" ref_strand="+" ref_description="SGN-E377881 [TUS-20-D2](-)">
      <seq>tggtagatacttacatggtttgattatgaaaatcaggtttttggtggatcagattccaattagagtatacaacaaccatgagagcattggaattgcataccccaaaagtcaaccaatgaaagtctattgtagtttatggaatgcagatgaatgggctacacaaggtggtagagtcaaaactgattggtcacaagcaccatttactgcctattataggaacattaacattgatggctgcgtcgttaaatcaggcgcttcctcatgtgcctcacggtctactgaatccacgaacagtgctaagtcgtgggagacacatgagcttgatgctaagggtcggaacagggtccgatgggtacagagcaaacatatggtttataattattgcgcggattctaagaggtttcctcaaggatattcacaagagtgtaaacgatcaaggttttaaaaaatcgaatttaatttaattacgtatggttcgaaactcgatgaatatgtaagctggttatgcgattgattgtttttgtgtgtgaaattctttattgttttgttttgttgtattaccaataaaataaaaggttgcttatttattttttttgattaaatgatatatgtactattcaagttttatacttttgtagtgggagaataccgtcaatccctttatctaaattaatgaatattttttccctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="47307" stop="48598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47607" g_stop="48305" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E377881" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47607" e_stop="48305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAGATACTTACAT-GTTTGATTATGAAAATCAGGTTTTTGGTGGATCAGATTCCAATTAGAGTATACAACAACCATGAGAGCATTGGAATTGCATACCCCAAAAGTCAACCAATGAAAGTCTATTGTAGTTTATGGAATGCAGATGAATGGGCTACACAAGGTGGTAGAGTCAAAACTGATTGGTCACAAGCACCATTTACTGCCTATTATAGGAACATTAACATTGATGGCTGCGTCGTTAAATCAGGCGCTTCCTCATGTGCCTCACGGTCTACTGAATCCACGAACAGTGCTAAGTCGTGGGAGACACATGAGCTTGATGCTAAGGGTCGGAACAGGGTCCGATGGGTACAGAGCAAACATATGGTTTATAATTATTGCGCGGATTCTAAGAGGTTTCCTCAAGGATATTCACAAGAGTGTAAACGATCAAGGTTTTAAAAAATCGAATTTAATTTAATTACGTATGGTTCGAAACTCGATGAATATGTAAGCTGGTTATGCGATTGATTGTTTTTGTGTGTGAAATTCTTTATTGTTTTGTTTTGTTGTATTACCAATAAAATAAAAGGTTGCTTATTTATTTTTTTTGATTAAATGATATATGTACTATTCAAGTTTTATACTTTTGTAGTGGGAGAATACCGTCAATCCCTTTATCTAAATTAATGAATATTTTTTCCCTTTAATGAGTTC</genome_strand>
        <mrna_strand>TGGTAGATACTTACATGGTTTGATTATGAAAATCAGGTTTTTGGTGGATCAGATTCCAATTAGAGTATACAACAACCATGAGAGCATTGGAATTGCATACCCCAAAAGTCAACCAATGAAAGTCTATTGTAGTTTATGGAATGCAGATGAATGGGCTACACAAGGTGGTAGAGTCAAAACTGATTGGTCACAAGCACCATTTACTGCCTATTATAGGAACATTAACATTGATGGCTGCGTCGTTAAATCAGGCGCTTCCTCATGTGCCTCACGGTCTACTGAATCCACGAACAGTGCTAAGTCGTGGGAGACACATGAGCTTGATGCTAAGGGTCGGAACAGGGTCCGATGGGTACAGAGCAAACATATGGTTTATAATTATTGCGCGGATTCTAAGAGGTTTCCTCAAGGATATTCACAAGAGTGTAAACGATCAAGGTTTTAAAAAATCGAATTTAATTTAATTACGTATGGTTCGAAACTCGATGAATATGTAAGCTGGTTATGCGATTGATTGTTTTTGTGTGTGAAATTCTTTATTGTTTTGTTTTGTTGTATTACCAATAAAATAAAAGGTTGCTTATTTATTTTTTTTGATTAAATGATATATGTACTATTCAAGTTTTATACTTTTGTAGTGGGAGAATACCGTCAATCCCTTTATCTAAATTAATGAATATTTTTTCCCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725177" ref_strand="-" ref_description="SGN-E725177 [FC26BC06]">
      <seq>tttttttttttttctttttttttttttttttttttttttttttttttttttttttttcacacacaaaaacaatcaatcgcataaccagcttacatattcatcgagtttcgaaccatacgtaattaaattaaattcgattttttaaaaccttgatcgtttacactcttgtgaatatccttgaggaaacctcttagaatccgcgcaataattataaaccatatgtttgctctgtacccatcggaccctgttccgacccttagcatcaagctcatgtgtctcccacgacttagcactgttcgtggattcagtagaccgtgaggcacatgaggaagcgcctgatttaacgacgcagccatcaatgttaatgttcctataataggcagtaaatggtgcttgtgaccaatcagttttgactctaccaccttgtgtagcccattcatctgcattccataaactacaatagacaattcggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="99458" stop="47427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48475" g_stop="48424" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.538"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48423" i_stop="48140" i_length="284">
            <donor d_prob="0.000" d_score="0.54"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48139" g_stop="47727" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="465" r_length="413" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E725177" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725177" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48475" e_stop="48424"/>
          <exon e_start="48139" e_stop="47727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTGTAGAGTATAATCTTTTATTTTTTTACATAATAATATTCCATAAGTTATACTCGATACCTTTTAAGAACGTATATTTCACTAGATATAAGTTTCATTACTAAAGAAAAAAATTATAGACTAGTCAATTAAAACCACGAATAATTCAATTTTTGCTCCCATTAGAACTCATTAAAGGGAAAAAATATTCATTAATTTAGATAAAGGGATTGACGGTATTCTCCCACTACAAAAGTATAAAACTTGAATAGTACATATATCATTTAATCAAAAAAAATAAATAAGCAACCTTTTATTTTATTGGTAATACAACAAAACAAAACAATAAAGAATTTCACACACAAAAACAATCAATCGCATAACCAGCTTACATATTCATCGAGTTTCGAACCATACGTAATTAAATTAAATTCGATTTTTTAAAACCTTGATCGTTTACACTCTTGTGAATATCCTTGAGGAAACCTCTTAGAATCCGCGCAATAATTATAAACCATATGTTTGCTCTGTACCCATCGGACCCTGTTCCGACCCTTAGCATCAAGCTCATGTGTCTCCCACGACTTAGCACTGTTCGTGGATTCAGTAGACCGTGAGGCACATGAGGAAGCGCCTGATTTAACGACGCAGCCATCAATGTTAATGTTCCTATAATAGGCAGTAAATGGTGCTTGTGACCAATCAGTTTTGACTCTACCACCTTGTGTAGCCCATTCATCTGCATTCCATAAACTACAATAGAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT............................................................................................................................................................................................................................................................................................TTTTTCACACACAAAAACAATCAATCGCATAACCAGCTTACATATTCATCGAGTTTCGAACCATACGTAATTAAATTAAATTCGATTTTTTAAAACCTTGATCGTTTACACTCTTGTGAATATCCTTGAGGAAACCTCTTAGAATCCGCGCAATAATTATAAACCATATGTTTGCTCTGTACCCATCGGACCCTGTTCCGACCCTTAGCATCAAGCTCATGTGTCTCCCACGACTTAGCACTGTTCGTGGATTCAGTAGACCGTGAGGCACATGAGGAAGCGCCTGATTTAACGACGCAGCCATCAATGTTAATGTTCCTATAATAGGCAGTAAATGGTGCTTGTGACCAATCAGTTTTGACTCTACCACCTTGTGTAGCCCATTCATCTGCATTCCATAAACTACAATAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393321" ref_strand="+" ref_description="SGN-E393321 [TUS-38-C7](-)">
      <seq>gtttatattttttgtgcggattataagtggtttcctcaaggatattcacaagagtgtaaacgatcaaggttttaaaaaatggaagttaatttaattacgtatggttcgaaactcgatgaatatgtaagctggttatgcgattgattgtttttgtgtgtgaaattcttttttgttttgttttgttgtattaccaataaaataaaaggttgtttaaaaattttttttgattaaatgatatatgtactattcaagttttatacttttgtagtgggagaataccgtcaataaaggtatctaaattaatgaatattttttccctttaatgagttgtaatgggagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="47676" stop="48620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47976" g_stop="48325" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E393321" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47976" e_stop="48325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATAATTATTGCGCGGATTCTAAGAGGTTTCCTCAAGGATATTCACAAGAGTGTAAACGATCAAGGTTTTAAAAAATCGAATTTAATTTAATTACGTATGGTTCGAAACTCGATGAATATGTAAGCTGGTTATGCGATTGATTGTTTTTGTGTGTGAAATTCTTTATTGTTTTGTTTTGTTGTATTACCAATAAAATAAAAGGTTGCTTATTTATTTTTTTTGATTAAATGATATATGTACTATTCAAGTTTTATACTTTTGTAGTGGGAGAATACCGTCAATCCCTTTATCTAAATTAATGAATATTTTTTCCCTTTAATGAGTTCTAATGGGAGCAAAAATTGAA</genome_strand>
        <mrna_strand>GTTTATATTTTTTGTGCGGATTATAAGTGGTTTCCTCAAGGATATTCACAAGAGTGTAAACGATCAAGGTTTTAAAAAATGGAAGTTAATTTAATTACGTATGGTTCGAAACTCGATGAATATGTAAGCTGGTTATGCGATTGATTGTTTTTGTGTGTGAAATTCTTTTTTGTTTTGTTTTGTTGTATTACCAATAAAATAAAAGGTTGTTTAAAAATTTTTTTTGATTAAATGATATATGTACTATTCAAGTTTTATACTTTTGTAGTGGGAGAATACCGTCAATAAAGGTATCTAAATTAATGAATATTTTTTCCCTTTAATGAGTTGTAATGGGAGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213783" ref_strand="+" ref_description="SGN-E213783 [cLEC-76-M5]">
      <seq>cgcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaggtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgcgggctaagggcgttgacaagacaacatgttgacttgatgaagcaaggctgtgaagacttggcaagggcaaaaaaaaaagcagttcaccccaaattgctgaaataaaactaagtggggaaaaaagctaaaatattccaaatggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="55210" stop="54319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54910" g_stop="54619" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E213783" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54910" e_stop="54619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGTTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCCGAAATTGCTGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</genome_strand>
        <mrna_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGACAAGACAACATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGGCAAAAAAAAAAGCAGTTCACCCCAAATTGCTGAAATAAAACTAAGTGGGGAAAAAAGCTAAAATATTCCAAATGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207313" ref_strand="+" ref_description="SGN-E207313 [cLEC-30-L1]">
      <seq>gcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaagtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgccggctaagggcgttgacaagacaacatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="55209" stop="54435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54909" g_stop="54735" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E207313" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54909" e_stop="54735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGTTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGAC</genome_strand>
        <mrna_strand>GCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAAGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCCGGCTAAGGGCGTTGACAAGACAACATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358829" ref_strand="+" ref_description="SGN-E358829 [cLHT-24-D4]">
      <seq>acattcattcactttaacattctctgatttatcccttcaaaatcactactctaattttctataatgttgctgcacctcactcttcttactcttgtcttgctatcccctgtttcggctgataatttctatcaagacgcggcggtcacgtttggtgaccagcgcgctcagatacaagatggagggcgccttctcaccttgtcacttgataaaatttcaggttccggatttcagtctaagaatgagtatttatttggaaggtttgatatgcagcttaaactcgtacctggaaattctgctggcactgtcaccacattctacttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="55942" stop="57153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56242" g_stop="56558" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="512" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="56935" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="517" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E358829" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56242" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="56935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACATTCACAATAACAAATTCTAATTTATCCCTT-TAAATCACTACTCTAATTTTCTATAATGTTGCTGCAGCTTTCTCTTCTTACACTAGTCTTACTATCCCCTGTTTCCGCTGATAATTTCTACCAAGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTT</genome_strand>
        <mrna_strand>ACATTCATTCACTTTAACATTCTCTGATTTATCCCTTCAAAATCACTACTCTAATTTTCTATAATGTTGCTGCACCTCACTCTTCTTACTCTTGTCTTGCTATCCCCTGTTTCGGCTGATAATTTCTATCAAGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACCTTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTTGGAAGGTTTGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAC...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704701" ref_strand="+" ref_description="SGN-E704701 [FA25AB02]">
      <seq>aatttatccctttaaatcactactctaattttctataatgttgctgcagctttctcttcttacactagtcttactatcccctgtttccgctgataatttctaccaggacgcggcggtcacgtttggtgaccagcgcgctcagatacaagatggagggcgccttctcacattgtcacttgataaaatttcaggttccggatttcagtctaagaatgagtatttattcggaaggttcgatatgcagcttaaactcgtacctggaaattctgctggcactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcatctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgatagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgcttacagcttcttacaggaatttcaatacaaatgcttgtgtttggtcagctgctacatctacttcgtcttgtggaggttctaagactgagtcactaaacaatgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="55967" stop="57501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56267" g_stop="56558" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="486" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="57201" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="757" r_length="271" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E704701" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56267" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="57201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTATCCCTTTAAATCACTACTCTAATTTTCTATAATGTTGCTGCAGCTTTCTCTTCTTACACTAGTCTTACTATCCCCTGTTTCCGCTGATAATTTCTACCAAGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAG</genome_strand>
        <mrna_strand>AATTTATCCCTTTAAATCACTACTCTAATTTTCTATAATGTTGCTGCAGCTTTCTCTTCTTACACTAGTCTTACTATCCCCTGTTTCCGCTGATAATTTCTACCAGGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCATCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGATAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGCTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACATCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCACTAAACAATGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726437" ref_strand="+" ref_description="SGN-E726437 [LA11DC03]">
      <seq>aatttatccctttaaatcactactctaattttctataatgttgctgcagctttctcttcttacactagtcttactatcccctgtttccgctgataatttctaccaagacgcggcggtcacgtttggtgaccagcgcgctcagatacaagatggagggcgccttctcacattgtcacttgataaaatttcaggttccggatttcagtctaagaatgagtatttattcggaaggttcgatatgcagcttaaactcgtacctggaaattctgctggcactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgtttacagcttcttacaggaatttcaatacaaatgcttgtgtttggtcagctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="55967" stop="57448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56267" g_stop="56558" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="486" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="57148" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="704" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E726437" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56267" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="57148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTATCCCTTTAAATCACTACTCTAATTTTCTATAATGTTGCTGCAGCTTTCTCTTCTTACACTAGTCTTACTATCCCCTGTTTCCGCTGATAATTTCTACCAAGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTA</genome_strand>
        <mrna_strand>AATTTATCCCTTTAAATCACTACTCTAATTTTCTATAATGTTGCTGCAGCTTTCTCTTCTTACACTAGTCTTACTATCCCCTGTTTCCGCTGATAATTTCTACCAAGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700897" ref_strand="+" ref_description="SGN-E700897 [FA14BH07]">
      <seq>ctcccttttactatcccctgtttccgctgataatttctaccaagacgcggcggtcacgtttggtgaccagcgcgctcagatacaagatggagggcgccttctcacattgtcacttgataaaatttcaggttccggatttcagtctaagaatgagtatttattcggaaggttcgatatgcagcttaaactcgtacctggaaattctgctggcactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgtttacagcttcttacaggaatttcaatacaaatgcttgtgtttggtcagctgctacgtctacttcgtcttgtggaggttctaagactgagtcagtaaacaatgatgagacatggcaaacgcaacaactgaacgctaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56035" stop="57534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56329" g_stop="56558" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="423" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="57234" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="727" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E700897" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56329" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="57234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAGTCTTACTATCCCCTGTTTCCGCTGATAATTTCTACCAAGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGA</genome_strand>
        <mrna_strand>CTCC-CTTTTACTATCCCCTGTTTCCGCTGATAATTTCTACCAAGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358830" ref_strand="+" ref_description="SGN-E358830 [cLHT-24-D6]">
      <seq>cttgctatcccctgtgtcggctgataatttctatcaacacgcggcagtcacataaggggaccaccacgctcacatacaggatggagggcgccttctcaccttgtcacttgataaaatttcaggttccggatttcagtctaagaatgagtatttatttggaaggtttgatatgcaccttaaactcgtacctggaaattctgctggcactgtcaccacattctacttgtcttctcaaggagcagggcatgatgaaattgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56036" stop="56996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56336" g_stop="56558" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56696" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="262" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E358830" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56336" e_stop="56558"/>
          <exon e_start="56658" e_stop="56696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTATCCCCTGTTTCCGCTGATAATTTCTACCAAGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTT</genome_strand>
        <mrna_strand>CTTGCTATCCCCTGTGTCGGCTGATAATTTCTATCAACACGCGGCAGTCACATAAGGGGACCACCACGCTCACATACAGGATGGAGGGCGCCTTCTCACCTTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTTGGAAGGTTTGATATGCACCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAC...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214197" ref_strand="+" ref_description="SGN-E214197 [cLEC-77-M21]">
      <seq>tgataatttctaccaagacgcggcggtcacgtttggtgaccagcgcgctcagatacaagatggagggcgccttctcacattgtcacttgataaaatttcaggttccggatttcagtctaagaatgagtatttattcggaaggttcgatatgcagcttaaactcgtacctggaaattctgctggcactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgtttacagcttcttacatgaattgtcaatacaatgcttgtgtttggacagctgctacgtctacttcgtcttgtggaggttctaagactgagtcagtaaacaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56057" stop="57499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56357" g_stop="56558" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="396" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="57199" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="665" r_length="269" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E214197" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56357" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="57199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAATTTCTACCAAGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATT-TCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATG</genome_strand>
        <mrna_strand>TGATAATTTCTACCAAGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACATGAATTGTCAATAC-AATGCTTGTGTTTGGACAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392903" ref_strand="-" ref_description="SGN-E392903 [TUS-37-B7](-)">
      <seq>tctacaagatgcaacggttacctttggtgatcagcgagctcagatacaagatggtgggcgccttctcgccttgtcccttgacaaaatttcaggttcaggatttcagtctaagaatgaatatttatttggaaggttcgatatgcagctcaaactagtacctggaaattctgctggcactgtcactaccttctatttgtcttctcaaggagcagggcacgacgaaattgattttgagtttctgggaaattcatcaggccaaccgtacacggttcatactaatgtctactctcaaggaaaaggcaacaaagaacaacagtttcgcctatggtttgatcccacctcgtcgttccacacctactctattgtttggaactctcaacgcatcatatttttggtggataatatcccaataagagtattcaacaaccacgaaaagcttggtgttgcattcccaaagaaccaagcaatgagagtttatgccagtttatggaatgctgatgactgggcaacacaaggagggcgagtgaagacggattggtcaatggctccgtttacagcttcttacaggaatttcaacacaaatgcttgtgtttggtcagctgcatcgtctacttcgtcctgtggaggctctaagaatgattcaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56065" stop="57491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56365" g_stop="56558" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="387" r_length="194" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="57191" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="648" r_length="261" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E392903" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392903" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56365" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="57191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACCAAGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAA</genome_strand>
        <mrna_strand>TCTAC-AAGATGCAACGGTTACCTTTGGTGATCAGCGAGCTCAGATACAAGATGGTGGGCGCCTTCTCGCCTTGTCCCTTGACAAAATTTCAGGTTCAGGATTTCAGTCTAAGAATGAATATTTATTTGGAAGGTTCGATATGCAGCTCAAACTAGTACCTGGAAATTCTGCTGGCACTGTCACTACCTTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCACGACGAAATTGATTTTGAGTTTCTGGGAAATTCATCAGGCCAACCGTACACGGTTCATACTAATGTCTACTCTCAAGGAAAAGGCAACAAAGAACAACAGTTTCGCCTATGGTTTGATCCCACCTCGTCGTTCCACACCTACTCTATTGTTTGGAACTCTCAACGCATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATAAGAGTATTCAACAACCACGAAAAGCTTGGTGTTGCATTCCCAAAGAACCAAGCAATGAGAGTTTATGCCAGTTTATGGAATGCTGATGACTGGGCAACACAAGGAGGGCGAGTGAAGACGGATTGGTCAATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAACACAAATGCTTGTGTTTGGTCAGCTGCATCGTCTACTTCGTCCTGTGGAGGCTCTAAGAATGATTCAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209812" ref_strand="+" ref_description="SGN-E209812 [cLEC-52-L14]">
      <seq>ttggtgaccagcgctctcagatacaagatggagggcgccttctcacattgtcacttgataaaatttcaggttccggatttcagtctaagaatgagtatttattcggaaggttcgatatgcagcttaaactcgtacctggaaattctgctggcactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56089" stop="57374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56389" g_stop="56558" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="364" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="57074" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="508" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E209812" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56389" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="57074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGAC</genome_strand>
        <mrna_strand>TTGGTGACCAGCGCTCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264629" ref_strand="+" ref_description="SGN-E264629 [cLEG-72-G4]">
      <seq>gcgctcagatacaagatggagggcgccttctcacattgtcacttgataaaatttcaggttccggatttcagtctaagaatgagtatttattcggaaggttcgatatgcagcttaaactcgtacctggaaattctgctggcactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56101" stop="57256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56401" g_stop="56558" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="352" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="56956" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="378" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E264629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56401" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="56956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTA</genome_strand>
        <mrna_strand>GCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239985" ref_strand="+" ref_description="SGN-E239985 [cLED-29-P1]">
      <seq>gccttctcacattgtcacttgataaaatttcaggttccggatttcagtctaagaatgagtatttattcggaaggttcgatatgcagcttaaactcgtacctggaaattctgctggcactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56125" stop="57069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56425" g_stop="56558" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56769" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="246" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E239985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56425" e_stop="56558"/>
          <exon e_start="56658" e_stop="56769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATA</genome_strand>
        <mrna_strand>GCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398419" ref_strand="+" ref_description="SGN-E398419 [TUS-46-C20]">
      <seq>tttcagtctaaaaatgagtatttattcggaaggttcgatatgcagcttaaactcgtacctggaaattctgctggcactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgtttacagcttcttacaggaatttcaatacaaatgcttgtgtttggtcagctgctacgtctacttcgtcttgtggaggttctaagactgagtcagtaaacaatgattgagacatgggcaaacgcaacaactggaacgctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56166" stop="57531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56466" g_stop="56558" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="287" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="57231" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="591" r_length="304" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E398419" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56466" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="57231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGA-TGAGACAT-GGCAAACGCAACAACT-GAACGCTAAT</genome_strand>
        <mrna_strand>TTTCAGTCTAAAAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATTGAGACATGGGCAAACGCAACAACTGGAACGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231224" ref_strand="+" ref_description="SGN-E231224 [cLED-5-D21]">
      <seq>ttcagtctaagaatgagtatttattcggaaggttcgatatgcagcttaaactcgtacctggaaattctgctggcactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgtttacagcttcttacaggaatttcaatacaaatgcttgtgtttggtcagctgctacgtctacttcgtcttgtggaggttctaagactgagtcagtaaacaatgatgagacatggcaaacgcaacaactgaacgctaatggaagaaatagaatacgatgggttcagcagaagtacatgatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56167" stop="57576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56467" g_stop="56558" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="286" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="57276" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="632" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E231224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56467" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="57276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGAAGAAATAGAATACGATGGGTTCAGCAGAAGTACATGATCTAC</genome_strand>
        <mrna_strand>TTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGAAGAAATAGAATACGATGGGTTCAGCAGAAGTACATGATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236464" ref_strand="+" ref_description="SGN-E236464 [cLED-13-P9]">
      <seq>ttcagtctaagaatgagtatttattcggaaggttcgatatgcagcttaaactcgtacctggaaattctgctggcactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgtttacagcttcttacaggaatttcaatacaaatgcttgtgtttggtcagctgctacgtctacttcgtcttgtggaggttctaagactgagtcagtaaacaatgatgagacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56167" stop="57506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56467" g_stop="56558" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="286" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="57206" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="562" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E236464" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56467" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="57206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATG</genome_strand>
        <mrna_strand>TTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241514" ref_strand="+" ref_description="SGN-E241514 [cLED-28-P13]">
      <seq>ttcagtctaagaatgagtatttattcggaaggttcgatatgcagctgaaactcgtacctggaaattctgctggcactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgtttacagcttcttacaggaatttcaatacaaatgcttgtgtttggtcagctgctacgtctacttcgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56167" stop="57464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56467" g_stop="56558" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="286" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="57164" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="520" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E241514" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56467" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="57164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTG</genome_strand>
        <mrna_strand>TTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTGAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237557" ref_strand="+" ref_description="SGN-E237557 [cLED-19-P7]">
      <seq>ttcagtctaagaatgagtatttattcggaaggttcgatatgcagcttaaactcgtacctggaaattctgctggcactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56167" stop="57153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56467" g_stop="56558" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="286" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="56936" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="292" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E237557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56467" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="56936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTT</genome_strand>
        <mrna_strand>TTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233244" ref_strand="+" ref_description="SGN-E233244 [cLED-6-C16]">
      <seq>cactgtcaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgtttacagcttcttacaggaatttcaatacaaatgcttgtgtttggtcagctgctacgtctacttcgtcttgtggaggttctaagactgagtcagtaaacaatgatgagacatggcaaacgcaacaactgaacgctaatggaagaaatagaatacgatgggttcagcagaagtacatgatctacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56240" stop="57579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56540" g_stop="56558" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="213" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="57279" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="562" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E233244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56540" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="57279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGAAGAAATAGAATACGATGGGTTCAGCAGAAGTACATGATCTACAAT</genome_strand>
        <mrna_strand>CACTGTCACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGAAGAAATAGAATACGATGGGTTCAGCAGAAGTACATGATCTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240472" ref_strand="+" ref_description="SGN-E240472 [cLED-21-K10]">
      <seq>cactgttaccacattctatttgtcttctcaaggagcagggcatgatgaaattgattttgagtttctaggaaattcatcaggactaccttacacggttcataccaatgtttactctcaaggaaaaggcaataaagaacaacaatttcgtctctggtttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgtttacagcttcttacaggaatttcaatacaaatgcttgtgtttggtcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56352" stop="57444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56540" g_stop="56558" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56658" g_stop="56851" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="213" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56931" g_stop="57144" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="427" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E240472" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56540" e_stop="56558"/>
          <exon e_start="56658" e_stop="56851"/>
          <exon e_start="56931" e_stop="57144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGTCACCACATTCTATGTAAGTAATAACACACTTTTCGTATTCCTACTATAACTAATTAAACAAAAACAAGAACATGTTGACTCAAGTATGTTTTTTTTTGGGTGTAATTTGCAGTTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCT</genome_strand>
        <mrna_strand>CACTGTTACCACATTCTAT...................................................................................................TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200425" ref_strand="+" ref_description="SGN-E200425 [cLEC-1-M23]">
      <seq>ttgatccaacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgtttacagcttcttacaggaatttcaatacaaatgcttgtgtttggtcagctgctacgtctacttcgtcttgtggaggttctaagactgagtcagtaaacaatgatgagacatggcaaacgcaacaactgaacgctaatggaagaaatagaatacgatgggttcagcagaagtacatgatctacaattactgtgcagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56494" stop="57593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56794" g_stop="56851" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56931" g_stop="57293" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="421" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E200425" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56794" e_stop="56851"/>
          <exon e_start="56931" e_stop="57293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGAAGAAATAGAATACGATGGGTTCAGCAGAAGTACATGATCTACAATTACTGTGCAGATGC</genome_strand>
        <mrna_strand>TTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGAAGAAATAGAATACGATGGGTTCAGCAGAAGTACATGATCTACAATTACTGTGCAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232837" ref_strand="+" ref_description="SGN-E232837 [cLED-8-I5]">
      <seq>aacttcgtcgttccacacttactctattgtttggaactctcaacggatcatatttttggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgtttacagcttcttacaggaatttcaatacaaatgcttgtgtttggtcagctgctacgtctacttcgtcttgtggaggttctaagactgagtcagtaaacaatgatgagacatggcaaacgcaacaactgaacgctaatggaagaaatagaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56501" stop="57546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56801" g_stop="56851" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56931" g_stop="57246" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="367" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E232837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56801" e_stop="56851"/>
          <exon e_start="56931" e_stop="57246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCATGTACGTAACAAGATAAACAAAACAATTACAAATATTTACTGATATATAATGTCTGACATTTTGGGGATTTTTTTTTCAGATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGAAGAAATAGAATA</genome_strand>
        <mrna_strand>AACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT...............................................................................ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGAAGAAATAGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228438" ref_strand="+" ref_description="SGN-E228438 [cLED-3-G15]">
      <seq>tggtggataatatcccaattagagtgttcaacaaccacgaagcacttggtgttgcatacccaaagaatcaagcaatgagagtttacgcgagtctatggaatgctgatgattgggctacacaaggaggacgggtgaagacagattggtctatggctccgtttacagcttcttacaggaatttcaatacaaatgcttgtgtttggtcagctgctacgtctacttcgtcttgtggaggttctaagactgagtcagtaaacaatgatgagacatggcaaacgcaacaactgaacgctaatggaagaaatagaatacgatgggttcagcagaagtacatgatctacaattactgtgcagatgctaataggttctctcaaggcttttctcctgaatgcaagcgttcaaggttctaaggcggatatatatagtatatgaatgtaaaattattttgtttcacttttctattcttttaattttgatcaggtaaaaaaaagaacatagtgtaattatttgtgtatgcaatatattctttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="56636" stop="57769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56936" g_stop="57469" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E228438" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56936" e_stop="57469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGAAGAAATAGAATACGATGGGTTCAGCAGAAGTACATGATCTACAATTACTGTGCAGATGCTAATAGGTTCTCTCAAGGCTTTTCTCCTGAATGCAAGCGTTCAAGGTTCTAAGGCGGATATATATAGTATATGAATGTAAAATTATGTTTGTTTCACTTTTCTATTCTTTTAATTTTGATCAGGTAAAAAAAAGAACATAGTGTAATTATTTGTGTATGCAATATATTCTTTATTC</genome_strand>
        <mrna_strand>TGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGAAGAAATAGAATACGATGGGTTCAGCAGAAGTACATGATCTACAATTACTGTGCAGATGCTAATAGGTTCTCTCAAGGCTTTTCTCCTGAATGCAAGCGTTCAAGGTTCTAAGGCGGATATATATAGTATATGAATGTAAAATTAT-TTTGTTTCACTTTTCTATTCTTTTAATTTTGATCAGGTAAAAAAAAGAACATAGTGTAATTATTTGTGTATGCAATATATTCTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722292" ref_strand="+" ref_description="SGN-E722292 [FC16DD02]">
      <seq>gggcgattggcggccaatcggccgaattaatatgctgacaatgcggtaaatgacccatgggttcaaaggcttctccatgcggtagagaccaatgtggcttggcttcaaccattaatgactgctaacaattatgactcgtttgtacatctggtcattgactttgttgttaagaggcttgaggttatcatgatgcaaaagagattcagtcaacttggtggtcttcaacttgacagagatattcgagcacttgtgagctacttctccaacatgacccaaaggactgttagggacaagtttgctcgtctaacccaaatggctacaatattaaacttggagaaggtctctgagattctggatttctggggtgagaactcaggacccatgacctggcgacttactccagctgaggttagaagagtgttgagtttgagggttgacttcaaatctgaggcaatatcggctcttaagttgtaaacctttttatggttcaattttgttcaatatctctttatatgcttggtgttgccacatttaaaattttcaggtttatttacttctataagagattgtattgggcacgaaatctatgaaatattgttcaatcgaacacttctttttcattgtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="65956" stop="35588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65641" g_stop="65048" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="622" r_length="594" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65047" i_stop="64704" i_length="344">
            <donor d_prob="0.463" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64703" g_stop="64675" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="651" r_length="29" r_score="0.483"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64674" i_stop="64357" i_length="318">
            <donor d_prob="0.687" d_score="0.00"/>
            <acceptor a_prob="0.724" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64356" g_stop="64334" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="674" r_length="23" r_score="0.478"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64333" i_stop="63703" i_length="631">
            <donor d_prob="0.653" d_score="0.00"/>
            <acceptor a_prob="0.884" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63702" g_stop="63680" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="697" r_length="23" r_score="0.565"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E722292" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65641" e_stop="65048"/>
          <exon e_start="64703" e_stop="64675"/>
          <exon e_start="64356" e_stop="64334"/>
          <exon e_start="63702" e_stop="63680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGCTGACAATGAGGTAAATGACCCATGGGTTCAAAGGCTTCTCCATGCGGTAGAGACCAATGTGGCTTGGCTTCAACCATTAATGACTGCTAACAATTATGACTCGTTTGTACATCTGGTCATTGACTTTGTTGTTAAGAGGCTTGAGGTTATCATGATGCAAAAGAGATTCAGTCAACTTGGTGGTCTTCAACTTGACAGAGATATTCGAGCACTTGTGAGCTACTTCTCCAACATGACCCAGAGGACTGTTAGGGACAAGTTTGCTCGTCTAACCCAAATGGCTACAATATTAAACTTGGAGAAGGTCTCTGAGATTCTGGATTTCTGGGGTGAGAACTCAGGACCCATGACCTGGCGACTTACTCCAGCTGAGGTTAGAAGAGTGTTGAGTTTGAGGGTTGACTTCAAATCTGAGGCAATATCGGCTCTTAAGTTGTAAACCTTTTTATGGTTCAATTTTGTTCAATATCTCTTTATATGCTTGGTGTTGCCACATTTAAAATTTTCAGGTTTATTTACTTCTATAAGAGATTGTATTGGGCACGAAATCTATGAAATATTGTTCAATCGAACACTTCTTTTTCATTGTGAAATTTCTTCTCATTCCTTGTCTGAACATGTCTTTTTAGCATGATTCATCTTCTACCTTCTTTGATCGCAGTGATTATCTATGTATTAAAGATATGTGTGTCCAGGTATTACTTCTCAGAGAAGATATCGTGCATTTAGCTCCATTTGAAGATCACAGGTTGTGTTATGTTCTCAGAATTTAATCTGATTGTCCATTCAATTTTAGGCTGAGTTTGGCATTATTTGTTTGTTATTTGGATTGAGTTTCTTTTTGGGTAATCCAGTCACAACTGGAGGGCCATTGACTCCTCTTGCAATTTTACATTGTTTATCAATTGGTTTCAAATTGAATCTGTGTCACATGATATAATTTCTCTATTATATAAAAAGGCAATGAATCAGCTCATGGTTGACATGGTTTCTTCCTGTCATTCAGATCAAATGTAGGGATATTCTTCTGTGTTGTTTTAGCTTCTTGAATAATGTACTGAACTGAAAACATTCGGTTGTGCAAGTAAGGGGCTAAAGAATGAGCCTACCCCTTAACATAATTGGTAGCTATAAATATGTCATACTTATCTATTCCAGTTCCCTTCCTGTTATTTTGGGCATTTCTTGTTTTATTGACAGAGAGTGCTTTCCCTACGGGATTAACTGGTAGTTGTACTATGATGTCAGACAATGGCAATACTGTTGGTATGATTATAGGGATCATCTTGAAAGAAAGAGAAGTTCGCAACTTGTATCAAAATTCCAACTGATGCCTGTAGAAACTCATTTTAGACTGTAGGTTAAAGCTCATATAGCTCCTCCCAAGGCAAAGGGTTAACTATTATAATGTACTTTCTTCTCTGTCAAACACCACACTCGAATCTCTTCTACTACGAAACCAGTCATTAACTTTATGAATTTGTTTCTCATTCTTAGTTCATGATTCTACTTTTCCCGTCTCTGACTAAGTTGTGATGCTATTCTTTGTACATTATGAAAGGCTGGATAAATATTTTGCAAGGTCATTGAATGCTTCCTATTGAAACTTTGTAACTGGATATGCTCTGACTACTTGATTGAGGTAAAATCCTATATTCTTCCATTTACTTATGCATTAGACTTCTTTCTTTTTCTCTTTCAACATGCTGGAAAATGTTAAAGAGTTGCTGAATCTGTATGTAATAATGTGTTCTCGTCAAATTATTGAATCGTTTACACACTTTATTGATTGATTCGGCTTTATTAAGTGTTGGAGTTATATCATTGTGAAGCAGGTTTGTTGCTATTGCAATCACAAAACAACATTTCCATTGTTTTCTTTTTGGTCTAATCAATAACTGATGCTCCTTCCTACAATTAGTTGTGTTGCAGTGGGAAAAAAACTAGAAAGATGA</genome_strand>
        <mrna_strand>AATATGCTGACAATGCGGTAAATGACCCATGGGTTCAAAGGCTTCTCCATGCGGTAGAGACCAATGTGGCTTGGCTTCAACCATTAATGACTGCTAACAATTATGACTCGTTTGTACATCTGGTCATTGACTTTGTTGTTAAGAGGCTTGAGGTTATCATGATGCAAAAGAGATTCAGTCAACTTGGTGGTCTTCAACTTGACAGAGATATTCGAGCACTTGTGAGCTACTTCTCCAACATGACCCAAAGGACTGTTAGGGACAAGTTTGCTCGTCTAACCCAAATGGCTACAATATTAAACTTGGAGAAGGTCTCTGAGATTCTGGATTTCTGGGGTGAGAACTCAGGACCCATGACCTGGCGACTTACTCCAGCTGAGGTTAGAAGAGTGTTGAGTTTGAGGGTTGACTTCAAATCTGAGGCAATATCGGCTCTTAAGTTGTAAACCTTTTTATGGTTCAATTTTGTTCAATATCTCTTTATATGCTTGGTGTTGCCACATTTAAAATTTTCAGGTTTATTTACTTCTATAAGAGATTGTATTGGGCACGAAATCTATGAAATATTGTTCAATCGAACACTTCTTTTTCATT........................................................................................................................................................................................................................................................................................................................................................GTGAAAAAAAAAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698738" ref_strand="+" ref_description="SGN-E698738 [FA07BG08]">
      <seq>ccgtggaatcgaaggaccagaccccagagatatcgaagtatatttggaggagatcttgtctttgacacagttgggtgaggattacacggggtatatgatatcgaagattaggggtttgagttctgttgatcccgaattaggtccccgtgccacaaaggcttttaggagtggtaatttcagtaaagttgtgcaagacattaccggttattatgtgatattggaaggatacttcatggttgagaatgtgagaaaagctataaaaattgatgaactcgtgttcgatagtctcacaacttccatggtggacgatgtcttctatgttctgcagagctgttgtcgaaggtccatttccacttcaaatatcaactctgtgattgcagttttaagcagtgctgtaagtctattaggcggtgagttcaatgaggctttgcaacagaaagtcagagagcctaatcttggagccaagctgttctctggcggcgttgctgtacaaaagaatggtacagagattgccacggctttgaataatatggatgtgagtggtgagtatgcattgaaattacggcatgagattgaagaacaatgtgctgaggtgttttctgcaccagcagatagagagagggtcaaatcatgtttatctgaattaaatgagacaagcaatggtttcaagaaggccttgaacattggcttggaacaactagtggctactgtgacgcctcgaattccgcccagtgttggatactgttgcaacaatcagttatgacctgtctgaatctgaatatgctgacaatgaagtaaatgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="69210" stop="65314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68910" g_stop="68318" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68317" i_stop="65826" i_length="2492">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65825" g_stop="65614" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="805" r_length="213" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E698738" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68910" e_stop="68318"/>
          <exon e_start="65825" e_stop="65614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGGAATCGAAGGACCAGACCCCAGAGATATCGAAGTATATTTGGAGGAGATCTTGTCTTTGACACAGTTGGGTGAGGATTACACGGGGTATATGATATCGAAGATTAGGGGTTTGAGTTCTGTTGATCCCGAATTAGGTCCCCGTGCCACAAAGGCTTTTAGGAGTGGTAATTTCAGTAAAGTTGTGCAAGACATTACCGGTTATTATGTGATATTGGAAGGATACTTCATGGTTGAGAATGTGAGAAAAGCTATAAAAATTGATGAACTCGTGTTCGATAGTCTCACAACTTCCATGGTGGACGATGTCTTCTATGTTCTGCAGAGCTGTTGTCGAAGGTCCATTTCCACTTCAAATATCAACTCTGTGATTGCAGTTTTAAGCAGTGCTGTAAGTCTATTAGGCGGTGAGTTCAATGAGGCTTTGCAACAGAAAGTCAGAGAGCCTAATCTTGGAGCCAAGCTGTTCTCTGGCGGCGTTGCTGTACAAAAGAATGGTACAGAGATTGCCACGGCTTTGAATAATATGGATGTGAGTGGTGAGTATGCATTGAAATTACGGCATGAGATTGAAGAACAATGTGCTGAGGTTAGTGCTAGATTCATGTATGATCACTCTAATTCAATGTTAGTCTAGTTTATAAAAATGTGCATGTGCTTTTTAAGAGGTGAATAAGTAAAGCTGTAATTTCGTTGTTCAACTTCATGTATGCTATGAAATACATGGGCGGATGGACTGCATGATGTGTTAATTCCAAAAACTAGAGCTGAAGGGGTTCACCATTAGTGATGAGACAAATCATCAGATGCAGAGAGAGATGTTTGGGAGAACTGACTTCCGTTTCTGTATTATGAAAATTGAGCTAAGAAAGTGGTTCAAGGAGAACTACTTATACAGTACAAGAGAAAATACCTAAGCTGCTATCCGACTAAGAACACTAACTAATCCTAACAGCCTGGCGACAGCTGTCCTAACAGAATGCTATGATTTACTGTACCACGTCCTTTTTAGTTCTAATCTGTTCTTTTTTTTGGGTAAAGTAATTAAATGATATTAGAAAGCATCAAAAAGATGCAATGTGCAAGAAAGCTGCTCCAAACAGAATACATGGGGCTAGCTTGGCAAAAACTTGAGAAATAGTCTAAAGGGGACCCTACTAGTACTGCTATACTGTACTAGAGAATAGAGATAGTGAATTAACAAAATCCAAAAAGTTATCCACACTGTTTACAGTGGCAAAAGAAAAAATGCCAACTAAATAAACTAACTAAACATTTGACCTTGAGTGCGCAAAAAGATGTTGATATTCCTTTAAAACATCTATTGTTTCTCTCCTTCCGTAGGCTCCAAAAAGTTGCTGCTGGGATCATTCTCCAGATCTTTCTGATGGATTTGTCAATTCTCCACAATATCCAGCTGGCATAGGCATCCTTGATGGTGTAGGACATTACCCATTGTAGGCTAAGCATAGTGTAGAAAAAATGCCACAGGTTAGCTTCTGCAGGGCAGTGCAAAAAAGGTGATTAACACTCTCATTGGTCTGCTTGCACATGACACATCTGTTGATGAGTATTACACCTTTTCTCCTGAGATTGTCTTGTGGTAGGGTTGCTTCCTTCAGGGTTGTCCAGTATAAACAAGATACTCTGAGAGGCTGCCTAGTTTTCCAGACATGTTTTCAAGGCCAAAATTGAAGAATCCTGTCATGCTCTTCAACCGCCAGTGTAGTGATTTCCAGAGTTTCTAGAACGGAAAGGATGTCATTAATTTCCCAATCCTGAAAGTTCCTTCTGAAAATAGGAGTCCAATAGTTCTCATCTCTGCACTTTTGTTGGAGGCTATCTGGAACAAGGAGGGGAAAGAGTCTTTAAGCATAGAGTTCCGTAGCTATTTGTCTTGCCAAAATCAGATCTCGAGTCCATTACCAGCTTTGAAGGATACTTTCTGGAAGAAATCATCTTGGAAACTACTTATATGTTTCCAGCCCCCAAAATCTAATCTGGTTAGCTTTTTTGGTTTTTGAGTGATAAGTAAGTTTTCTTTGGTAATAACTGTGAAATATTACCATTGCAACAAGAACCATTTACAGAATTAAGGAGCATCCAGTATCACCACCCCCTTCTAGGAAGATTGCAGCAAGTATCTAGACCTCAAGCAAAACAAAAAACAAACAAACCACACCAACAATCTAGTTACAAATTCTAGACACTAAGTGCATCTATGAGCTCTTTTGAAGCAGTGTAACGTATTTATCCTCCCCTAAATTTATGATGAGACCTAGAAATCATCAGACACAGAGAGAGATGTTTGGGAGAATTGACTTCCCTTTCTGTATTATGAAAATTGAACGAAGAAAGTGATTCAAGCAGAACTACTTACAGAATACAAGAGAGAGAAAATATCTAAGCTTGCTAACCAACTAAGAGCACGAACTAATCCTAACAACTAAGCCTTGTTCAGTGCTTGCTTCTTGCTTGATGTCCCTTCTTCTTCTGTTTCCAGTCACTTGCATTGTAGATTCTATTGCCATTGCTGCCTTCAGAGTCGGGATCCATGCTCTCTTTTCCATGGATAGTGTAAGTTACTGTACCATGCGCCGAGAGAGAAACGGAACCCTCACCCTATATCCATTTTTTCTGATTAATTTATTTGGTAAGTAAGTTGAACATTGAGTTCTAGAATGATAGTCTGTTGCGTCTATTTCGTGCCATAGTTTTGTGACATAAAAACTGCTGTGTTTCTGAGAATCCCTTGAACTTTAAGTATCCATATATAGCCTCAGATTCCATTGGGATAGACCATGTTTAGGTTACTCTTTTTTTTTTCTTTGCTTTCTCACCGTTACCTTTGAAATCTAGAATAATACCTGTTACATTCATCTCTTGCCTTGAATCTTTGAACATTAAAGATATTATTGGGGTTATGATTCATTCTGAAGCTAATCGCTTATCAAAAAAGATTACCTTCAGGATGAATTATAACCTCAAATTGCATTCAGAAGATACCATTTAGGTCATATTTTTCTTTATTATTTTCTACCTTTGGCTCTTTTACTGGTTTTAATTGGAGTGCATTGTCAGGTGTTTTCTGCACCAGCAGATAGAGAGAGGGTCAAATCATGTTTATCTGAATTAAATGAGACAAGCAATGGTTTCAAGAAGGCCTTGAACATTGGCTTGGAACAACTAGTGGCTACTGTGACGCCTCGAATTC-GGCCAGTGTTGGATACTGTTGCAACAATCAGTTATGAGCTGTCTGAATCTGAATATGCTGACAATGAGGTAAATGACCC</genome_strand>
        <mrna_strand>CCG-TGGAATCGAAGGACCAGACCCCAGAGATATCGAAGTATATTTGGAGGAGATCTTGTCTTTGACACAGTTGGGTGAGGATTACACGGGGTATATGATATCGAAGATTAGGGGTTTGAGTTCTGTTGATCCCGAATTAGGTCCCCGTGCCACAAAGGCTTTTAGGAGTGGTAATTTCAGTAAAGTTGTGCAAGACATTACCGGTTATTATGTGATATTGGAAGGATACTTCATGGTTGAGAATGTGAGAAAAGCTATAAAAATTGATGAACTCGTGTTCGATAGTCTCACAACTTCCATGGTGGACGATGTCTTCTATGTTCTGCAGAGCTGTTGTCGAAGGTCCATTTCCACTTCAAATATCAACTCTGTGATTGCAGTTTTAAGCAGTGCTGTAAGTCTATTAGGCGGTGAGTTCAATGAGGCTTTGCAACAGAAAGTCAGAGAGCCTAATCTTGGAGCCAAGCTGTTCTCTGGCGGCGTTGCTGTACAAAAGAATGGTACAGAGATTGCCACGGCTTTGAATAATATGGATGTGAGTGGTGAGTATGCATTGAAATTACGGCATGAGATTGAAGAACAATGTGCTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTCTGCACCAGCAGATAGAGAGAGGGTCAAATCATGTTTATCTGAATTAAATGAGACAAGCAATGGTTTCAAGAAGGCCTTGAACATTGGCTTGGAACAACTAGTGGCTACTGTGACGCCTCGAATTCCGCCCAGTGTTGGATACTGTTGCAACAATCAGTTATGACCTGTCTGAATCTGAATATGCTGACAATGAAGTAAATGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272474" ref_strand="+" ref_description="SGN-E272474 [cLEM-19-D18]">
      <seq>tgtatttgaagaaggtaattgccatgagatcgcgccttgagtatgagcaattggttgaaatgatgagtgatcagcagggatccagccagaaccagcttaattttgtatcctgtttgactaatttattcaaagatatcgtcttggctattgaagagaatgatgaaactttaaggagcttgtgtggagaggatggcattgtttatgcaatatgtgaacttcaagaagagtgtgattctcgtggttctactattataaagaagtacatggagtacaggaaactagcgaaagtgacttctgagattaattcttacaagagcgatttgctgtctgttggaatcgaaggaccagaccccagagatatcgaagtatatttggaggagatcttgtctttgacacagttgggtgaggattacacggggtatatgatatcgaagattangggtttgagttctgttgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="69537" stop="68478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69237" g_stop="68778" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E272474" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69237" e_stop="68778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTTGAAGAAGGTAATTGCCATGAGATCGCGCCTTGAGTATGAGCAATTGGTTGAAATGATGAGTGATCAGCAGGGATCCAGCCAGAACCAGCTTAATTTTGTATCCTGTTTGACTAATTTATTCAAAGATATCGTCTTGGCTATTGAAGAGAATGATGAAACTTTAAGGAGCTTGTGTGGAGAGGATGGCATTGTTTATGCAATATGTGAACTTCAAGAAGAGTGTGATTCTCGTGGTTCTACTATTATAAAGAAGTACATGGAGTACAGGAAACTAGCGAAAGTGACTTCTGAGATTAATTCTTACAAGAGCGATTTGCTGTCTGTTGGAATCGAAGGACCAGACCCCAGAGATATCGAAGTATATTTGGAGGAGATCTTGTCTTTGACACAGTTGGGTGAGGATTACACGGGGTATATGATATCGAAGATTAGGGGTTTGAGTTCTGTTGATCC</genome_strand>
        <mrna_strand>TGTATTTGAAGAAGGTAATTGCCATGAGATCGCGCCTTGAGTATGAGCAATTGGTTGAAATGATGAGTGATCAGCAGGGATCCAGCCAGAACCAGCTTAATTTTGTATCCTGTTTGACTAATTTATTCAAAGATATCGTCTTGGCTATTGAAGAGAATGATGAAACTTTAAGGAGCTTGTGTGGAGAGGATGGCATTGTTTATGCAATATGTGAACTTCAAGAAGAGTGTGATTCTCGTGGTTCTACTATTATAAAGAAGTACATGGAGTACAGGAAACTAGCGAAAGTGACTTCTGAGATTAATTCTTACAAGAGCGATTTGCTGTCTGTTGGAATCGAAGGACCAGACCCCAGAGATATCGAAGTATATTTGGAGGAGATCTTGTCTTTGACACAGTTGGGTGAGGATTACACGGGGTATATGATATCGAAGATTANGGGTTTGAGTTCTGTTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704044" ref_strand="+" ref_description="SGN-E704044 [FA23AG12]">
      <seq>cggcaattttccctcaaaaatagttcaaagcttcacgaaatgaacccaaaataacacttacaggttcgagaaattcgtcaaatttggccggaaaaaatggcttccgacgaaggaaccaatttagattcatctcggttgaaatttgggacaccggaggcgttggaagaggtgcggaatctcactgacgttggagacatgactagacttctccacgagtgcattgcatatcaacgagccctagatctagaactggatactatcctttcacatagatctgaccttgacaagcagctttccggccttcaaaaatccgctcaagttctcgacattgttaaagctgacgcggatcacttattctccaacatcagttcaacttctctccttgctgatcaggtaagcgcaaaagtccgtcagctcgatctaggtcagtcgcgtgttaacgacactctccttcgaatagatgctatcgttgatcgctctaattgtttagacggtgtacgtaaggcacttgcatctgaggactttgaatctgctgctaattatgttcagacgttccttcaacttgacgctaagtacaaggattcagctgcttctgaccagagagaccagctccttgcctctaagaagcagcttgaagggattgtccggcgtaaattggcagaagcagttgatcagcgtgatcactccaccgttctgcggttcataaggctgtatcctccgttggcattggaggaggagggactgcaagtgtacgtgatgtatttgaagaaagtaattgccatgagatcgcgccttgagtatgagcaattggttgaaatgatgagtgatcagcagggatccagccagaaccagcttaattttgtatcctgtttgactaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="70294" stop="68813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69994" g_stop="69113" g_length="882"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="882" r_length="882" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E704044" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69994" e_stop="69113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATTTTCCCTCAAAAATAGTTCAAAGCTTCACGAAATGAACCCAAAATAACACTTACAGGTTCGAGAAATTCGTCAAATTTGGCCGGAAAAAATGGCTTCCGACGAAGGAACCAATTTAGATTCATCTCGGTTGAAATTTGGGACACCGGAGGCGTTGGAAGAGGTGCGGAATCTCACTGACGTTGGAGACATGACTAGACTTCTCCACGAGTGCATTGCATATCAACGAGCCCTAGATCTAGAACTGGATACTATCCTTTCACATAGATCTGACCTTGACAAGCAGCTTTCCGGCCTTCAAAAATCCGCTCAAGTTCTCGACATTGTTAAAGCTGACGCGGATCACTTATTCTCCAACATCAGTTCAACTTCTCTCCTTGCTGATCAGGTAAGCGCAAAAGTCCGTCAGCTCGATCTAGGTCAGTCGCGTGTTAACGACACTCTCCTTCGAATAGATGCTATCGTTGATCGCTCTAATTGTTTAGACGGTGTACGTAAGGCACTTGCATCTGAGGACTTTGAATCTGCTGCTAATTATGTTCAGACGTTCCTTCAACTTGACGCTAAGTACAAGGATTCAGCTGCTTCTGACCAGAGAGACCAGCTCCTTGCCTCTAAGAAGCAGCTTGAAGGGATTGTCCGGCGTAAATTGGCAGAAGCAGTTGATCAGCGTGATCACTCCACCGTTCTGCGGTTCATAAGGCTGTATCCTCCGTTGGCATTGGAGGAGGAGGGACTGCAAGTGTACGTGATGTATTTGAAGAAGGTAATTGCCATGAGATCGCGCCTTGAGTATGAGCAATTGGTTGAAATGATGAGTGATCAGCAGGGATCCAGCCAGAACCAGCTTAATTTTGTATCCTGTTTGACTAATTTA</genome_strand>
        <mrna_strand>CGGCAATTTTCCCTCAAAAATAGTTCAAAGCTTCACGAAATGAACCCAAAATAACACTTACAGGTTCGAGAAATTCGTCAAATTTGGCCGGAAAAAATGGCTTCCGACGAAGGAACCAATTTAGATTCATCTCGGTTGAAATTTGGGACACCGGAGGCGTTGGAAGAGGTGCGGAATCTCACTGACGTTGGAGACATGACTAGACTTCTCCACGAGTGCATTGCATATCAACGAGCCCTAGATCTAGAACTGGATACTATCCTTTCACATAGATCTGACCTTGACAAGCAGCTTTCCGGCCTTCAAAAATCCGCTCAAGTTCTCGACATTGTTAAAGCTGACGCGGATCACTTATTCTCCAACATCAGTTCAACTTCTCTCCTTGCTGATCAGGTAAGCGCAAAAGTCCGTCAGCTCGATCTAGGTCAGTCGCGTGTTAACGACACTCTCCTTCGAATAGATGCTATCGTTGATCGCTCTAATTGTTTAGACGGTGTACGTAAGGCACTTGCATCTGAGGACTTTGAATCTGCTGCTAATTATGTTCAGACGTTCCTTCAACTTGACGCTAAGTACAAGGATTCAGCTGCTTCTGACCAGAGAGACCAGCTCCTTGCCTCTAAGAAGCAGCTTGAAGGGATTGTCCGGCGTAAATTGGCAGAAGCAGTTGATCAGCGTGATCACTCCACCGTTCTGCGGTTCATAAGGCTGTATCCTCCGTTGGCATTGGAGGAGGAGGGACTGCAAGTGTACGTGATGTATTTGAAGAAAGTAATTGCCATGAGATCGCGCCTTGAGTATGAGCAATTGGTTGAAATGATGAGTGATCAGCAGGGATCCAGCCAGAACCAGCTTAATTTTGTATCCTGTTTGACTAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318650" ref_strand="+" ref_description="SGN-E318650 [cTOB-9-P2]">
      <seq>cttacaggttcgagaaattcgtcaaatttggccggaaaaaatggcttccgacgaaggaaccaatttagattcatctcggttgaaatttgggacaccggaggcgttggaagaggtgcggaatctcactgacgttggagacatgactagacttctccacgagtgcattgcatatcaacgagccctagatctagaactggatactatcctttcacatagatctgaccttgacaagcagctttccggccttcaaaaatgcgctcaagttctcgacattgttaaagctgacgcggatcacttattctccaacatcagttcaacttctctccttgctgatcaggtaagcgcaaaagtccgtcagctcgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="70238" stop="69273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69938" g_stop="69573" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E318650" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69938" e_stop="69573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACAGGTTCGAGAAATTCGTCAAATTTGGCCGGAAAAAATGGCTTCCGACGAAGGAACCAATTTAGATTCATCTCGGTTGAAATTTGGGACACCGGAGGCGTTGGAAGAGGTGCGGAATCTCACTGACGTTGGAGACATGACTAGACTTCTCCACGAGTGCATTGCATATCAACGAGCCCTAGATCTAGAACTGGATACTATCCTTTCACATAGATCTGACCTTGACAAGCAGCTTTCCGGCCTTCAAAAATCCGCTCAAGTTCTCGACATTGTTAAAGCTGACGCGGATCACTTATTCTCCAACATCAGTTCAACTTCTCTCCTTGCTGATCAGGTAAGCGCAAAAGTCCGTCAGCTCGATCT</genome_strand>
        <mrna_strand>CTTACAGGTTCGAGAAATTCGTCAAATTTGGCCGGAAAAAATGGCTTCCGACGAAGGAACCAATTTAGATTCATCTCGGTTGAAATTTGGGACACCGGAGGCGTTGGAAGAGGTGCGGAATCTCACTGACGTTGGAGACATGACTAGACTTCTCCACGAGTGCATTGCATATCAACGAGCCCTAGATCTAGAACTGGATACTATCCTTTCACATAGATCTGACCTTGACAAGCAGCTTTCCGGCCTTCAAAAATGCGCTCAAGTTCTCGACATTGTTAAAGCTGACGCGGATCACTTATTCTCCAACATCAGTTCAACTTCTCTCCTTGCTGATCAGGTAAGCGCAAAAGTCCGTCAGCTCGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278553" ref_strand="+" ref_description="SGN-E278553 [cLEL-2-H16]">
      <seq>ttttttttttttttttttttttacttgttcggttggtttctgaatttcatttcaactcgccccgatattgagtttacaagatgaggcatttaacctagatgaggcatcctaagattttcaatattggggaacttcatttctccatgctactatgactacatgtgttatcatcatttatcttgagcaattaaaacaaatgatggacttgtggccctttacaaaagaggaactcaaatgtgttgaatcactatatacattgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="35585" stop="71147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70200" g_stop="70220" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.810"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70221" i_stop="70607" i_length="387">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70608" g_stop="70847" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="262" r_length="241" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E278553" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70200" e_stop="70220"/>
          <exon e_start="70608" e_stop="70847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTTTCCTTTTCTTTTTGTTTTGTCGTTTGTTTGTTACATTTTTTAGTTGGTTAGTGTTTTTTATTCATCGTAAAATCACGAAGAGAAAAAGAGACTTCTATATAGAAAATGATTTGAGCGAGGAGATTATTTGAATATATAGTAAAAAATCAACGATGATCTTTAAGTTATGAGTATGAGTAAAATGTGAAATTTTCGAGCTAGTTATAGATTATGAAGTAACGAACAAAGTAAATAGCGAATGAAGTACATTGTTGAACCGCAAGGCACATACCATGTAGTATGAGTAAAATGTGAAATTTTCGAGCTAGTTATAGATTATGAAGTAACGAACAAAGTAAATAGCGAATGAAGTACATTGTTGAACCGCAAGGCACATACCATGTAACGGAAACAGTAGAACTACTTGTTCCCTTGTTTTCTGAATTTCATTTCAAATTG-AATGATATTGAGTTTACAAGATGAGGCATCTAACCTAGATGAGGCATCCTAAGATTTTCAATATTGGGGAACTTCATTTCTCCATGCTACTATGACTACATGTGTTATCATCATTCATCTTGAGCAATTCAAACAAATGATGGACTTGTGGCCCTTTACAAAAGAGGAACTCAAATGTGTTGTATCACTATATACATTGCAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................TACTTGTTCGGTTGGTTTCTGAATTTCATTTCAACTCGCCCCGATATTGAGTTTACAAGATGAGGCATTTAACCTAGATGAGGCATCCTAAGATTTTCAATATTGGGGAACTTCATTTCTCCATGCTACTATGACTACATGTGTTATCATCATTTATCTTGAGCAATTAAAACAAATGATGGACTTGTGGCCCTTTACAAAAGAGGAACTCAAATGTGTTGAATCACTATATACATTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217077" ref_strand="-" ref_description="SGN-E217077 [cLEL-1-N8](-)">
      <seq>ttttttttttttttttttttttttttttttttcctgaatcctcatttcaaatcgaatgatattgagtttacaagatgaggcatctaacctagatgaggcatcctaagatttccaatattggggaacttcatttctccatgctactatgactacatgtgttatcatcattcatcttgagcaattcaaacaaatgatggacttgtggccctttacaaaagaggaactcaaatgggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="35586" stop="71127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70200" g_stop="70225" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.808"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70226" i_stop="70618" i_length="393">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70619" g_stop="70827" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="236" r_length="210" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E217077" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217077" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70200" e_stop="70225"/>
          <exon e_start="70619" e_stop="70827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTTTCCTTTTCTTTTTGTTTTGTCGTTTGTTTGTTACATTTTTTAGTTGGTTAGTGTTTTTTATTCATCGTAAAATCACGAAGAGAAAAAGAGACTTCTATATAGAAAATGATTTGAGCGAGGAGATTATTTGAATATATAGTAAAAAATCAACGATGATCTTTAAGTTATGAGTATGAGTAAAATGTGAAATTTTCGAGCTAGTTATAGATTATGAAGTAACGAACAAAGTAAATAGCGAATGAAGTACATTGTTGAACCGCAAGGCACATACCATGTAGTATGAGTAAAATGTGAAATTTTCGAGCTAGTTATAGATTATGAAGTAACGAACAAAGTAAATAGCGAATGAAGTACATTGTTGAACCGCAAGGCACATACCATGTAACGGAAACAGTAGAACTACTTGTTCCCTTGTTTTCTGAAT-TTCATTTCAAATTGAATGATATTGAGTTTACAAGATGAGGCATCTAACCTAGATGAGGCATCCTAAGATTTTCAATATTGGGGAACTTCATTTCTCCATGCTACTATGACTACATGTGTTATCATCATTCATCTTGAGCAATTCAAACAAATGATGGACTTGTGGCCCTTTACAAAAGAGGAACTCAAATGTGTTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCCTGAATCCTCATTTCAAATCGAATGATATTGAGTTTACAAGATGAGGCATCTAACCTAGATGAGGCATCCTAAGATTTCCAATATTGGGGAACTTCATTTCTCCATGCTACTATGACTACATGTGTTATCATCATTCATCTTGAGCAATTCAAACAAATGATGGACTTGTGGCCCTTTACAAAAGAGGAACTCAAATGGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714144" ref_strand="+" ref_description="SGN-E714144 [FB10CE11]">
      <seq>actcagttcagaaaagacgaacactcgaggaggcctcagcatcaatggcagcagcacttgaagaagtggggagaggcctgtgaagaaactagaggtgagttattgcgtggcggttatagttggggttatacatggctcctctcctcatgcataggtttaatcaattgctagaggagtgcgatgatcagcacatcacgttgggtaagttttgccggttgtttgtcaaatatacttgatgctgtagaagatgagagctgcagagaattggccattgttatgtgctgttgcaatgtatatagtgatacaacacatttgagttcctcttttgtaaagggccacaagtccatcatttgtttgaattgctcaagatgaataatgataacacatgtagtcatagtagcatggagaaatgaagttccccaatattgaaaatcttaggatgcctcatctaggttagatgcctcatcttgtaaactcaatatcattcaatttgaaatgaaattcagaaaacaagggaacaagtagttctactgtttccgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="71431" stop="70288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71131" g_stop="70586" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E714144" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71131" e_stop="70586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAGTTCAGAAAAGACGAACACTCGAGGAGGCCTCAGCATCAATGGCAGCAGCACTTGAAGAAGTGGGGAGAGGCCTGTGAAGAAACTAGAGGTGAGTTATTGCGTGGCGGTTATAGTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTACATG</genome_strand>
        <mrna_strand>ACTCAGTTCAGAAAAGACGAACACTCGAGGAGGCCTCAGCATCAATGGCAGCAGCACTTGAAGAAGTGGGGAGAGGCCTGTGAAGAAACTAGAGGTGAGTTATTGCGTGGCGGTTATAGTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATAATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714394" ref_strand="+" ref_description="SGN-E714394 [FB11BC10]">
      <seq>actcagttcagaaaagacgaacactcgaggaggcctcagcatcaatggcagcagcacttgaagaagtggggagaggcctgtgaagaaactagaggtgagttattgcgtggcggttatagttggggttatacatggctcctctcctcatgcataggtttaatcaattgctagaggagtgcgatgatcagcacatcacgttgggtaagttttgccggttgtttgtcaaatatacttgatgctgtagaagatgagagctgcagagaattggccattgttatgtgctgttgcaatgtatatagtgatacaacacatttgagttcctcttttgtaaagggccacaagtccatcatttgtttgaattgctcaagatgaataatgataacacatgtagtcatagtagcatggagaaatgaagttccccaatattgaaaatcttaggatgcctcatctaggttagatgcctcatcttgtaaactcaatatcattcaatttgaaatgaaattcagaaaacaagggaacaagtagttctactgtttccgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="71431" stop="70288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71131" g_stop="70586" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E714394" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71131" e_stop="70586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAGTTCAGAAAAGACGAACACTCGAGGAGGCCTCAGCATCAATGGCAGCAGCACTTGAAGAAGTGGGGAGAGGCCTGTGAAGAAACTAGAGGTGAGTTATTGCGTGGCGGTTATAGTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTACATG</genome_strand>
        <mrna_strand>ACTCAGTTCAGAAAAGACGAACACTCGAGGAGGCCTCAGCATCAATGGCAGCAGCACTTGAAGAAGTGGGGAGAGGCCTGTGAAGAAACTAGAGGTGAGTTATTGCGTGGCGGTTATAGTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATAATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540965" ref_strand="+" ref_description="SGN-E540965 [TUS-61-I5]">
      <seq>gttggggttatacatggctcctctcctcatgcataggtttaatcaattgctagaggagtgcgatgatcagcacatcacgttgggtaagttttgccggttgtttgtcaaatatacttgatgctgtagaagatgagagctgcagagaattggccattgttatgtgctgttgcaatgtatatagtgatacaacacatttgagttcctcttttgtaaagggccacaagtccatcatttgtttgaattgctcaagatgaatgatgataacacatgtagtcatagtagcatggagaaatgaagttccccaatattgaaaatcttaggatgcctcatctaggttagatgcctcatcttgtaaactcaatatcattcaatttgaaatgaaattcagaaaacaagggaacaagtagttctactgtttccgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="71313" stop="70288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71013" g_stop="70586" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E540965" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71013" e_stop="70586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTACATG</genome_strand>
        <mrna_strand>GTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548471" ref_strand="+" ref_description="SGN-E548471 [TUS-61-I5](-)">
      <seq>gttggggttatacatggctcctctcctcatgcataggtttaatcaattgctagaggagtgcgatgatcagcacatcacgttgggtaagttttgccggttgtttgtcaaatatacttgatgctgtagaagatgagagctgcagagaattggccattgttatgtgctgttgcaatgtatatagtgatacaacacatttgagttcctcttttgtaaagggccacaagtccatcatttgtttgaattgctcaagatgaatgatgataacacatgtagtcatagtagcatggagaaatgaagttccccaatattgaaaatcttaggatgcctcatctaggttagatgcctcatcttgtaaactcaatatcattcaatttgaaatgaaattcagaaaacaagggaacaagtagttctactgtttccgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="71313" stop="70288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71013" g_stop="70586" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E548471" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71013" e_stop="70586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTACATG</genome_strand>
        <mrna_strand>GTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294447" ref_strand="-" ref_description="SGN-E294447 [cLET-14-B16](-)">
      <seq>ttggggttatacatggctccggtcctcatgcataggtttaatcaattgctagaggagtgcgatgatcagcacatcacgttgggtaagttttgccggttgtttgtcaaatatacttgatgctgtagaagatgagagctgcagagaattggccattgttatgtgctgttgcaatgtatatagtgatacaacacatttgagttcctcttttgtgaagggccacaagtccatcatttgtttgaattgctcaagatgaatgatgataacacatgtagtcatagtagcatggagaaatgaagttccccaatattgaaaatcttaggatgcctcatctaggttagatgcctcatcttgtaaactcactatcattcaatttgaaatgaaattcagaaaacaagggaacaagtagttctactgtttccgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="71312" stop="70288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71012" g_stop="70586" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E294447" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294447" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71012" e_stop="70586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTACATG</genome_strand>
        <mrna_strand>TTGGGGTTATACATGGCTCCGGTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTGAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCACTATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294446" ref_strand="+" ref_description="SGN-E294446 [cLET-14-B16]">
      <seq>ttggggttatacatggctccggtcctcatgcataggtttaatcaattgctagaggagtgcgatgatcagcacatcacgttgggtaagttttgccggttgtttgtcaaatatacttgatgctgtagaagatgagagctgcagagaattggccattgttatgtgctgttgcaatgtatatagtgatacaacacatttgagttcctcttttgtgaagggccacaagtccatcatttgtttgaattgctcaagatgaatgatgataacacatgtagtcatagtagcatggagaaatgaagttccccaatattgaaaatcttaggatgcctcatctaggttagatgcctcatcttgtaaactcactatcattcaatttgaaatgaaattcagaaaacaagggaacaagtagttctactgtttccgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="71312" stop="70288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71012" g_stop="70586" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E294446" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71012" e_stop="70586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTACATG</genome_strand>
        <mrna_strand>TTGGGGTTATACATGGCTCCGGTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTGAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCACTATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734304" ref_strand="+" ref_description="SGN-E734304 [LB12BC07]">
      <seq>gtgatattctggaggctttcaactcagttcagaaaagacgaacactcgaggaggcctcagcatcaatggcagcagcacttgaagaagtggggagaggcctgtgaagaaactagaggtgagttattgcgtggcggttatagttggggttatacatggctcctctcctcatgcataggtttaatcaattgctagaggagtgcgatgatcagcacatcacgttgggtaagttttgccggttgtttgtcaaatatacttgatgctgtagaagatgagagctgcagagaattggccattgttatgtgctgttgcaatgtatatagtgatacaacacatttgagttcctcttttgtaaagggccacaagtccatcatttgtttgaattgctcaagatgaatgatgataacacatgtagtcatagtagcatggagaaatgaagttccccaatattgaaaatcttaggatgcctcatctaggttagatgcctcatcttgtaaactcaatatcattcaatttgaaatgaaattcagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="71452" stop="70319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71152" g_stop="70612" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E734304" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71152" e_stop="70612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATATTCTGGAGGCTTTCAACTCAGTTCAGAAAAGACGAACACTCGAGGAGGCCTCAGCATCAATGGCAGCAGCACTTGAAGAAGTGGGGAGAGGCCTGTGAAGAAACTAGAGGTGAGTTATTGCGTGGCGGTTATAGTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACA</genome_strand>
        <mrna_strand>GTGATATTCTGGAGGCTTTCAACTCAGTTCAGAAAAGACGAACACTCGAGGAGGCCTCAGCATCAATGGCAGCAGCACTTGAAGAAGTGGGGAGAGGCCTGTGAAGAAACTAGAGGTGAGTTATTGCGTGGCGGTTATAGTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704990" ref_strand="+" ref_description="SGN-E704990 [FA25DD09]">
      <seq>gtctagacttgcaccaactaaatattattctgaaagttgatcttcagggatccattgaggccgtcagacaagctcttcaggttcttccacaggataatgtcactttgaagttcctactgcaagctactggtgatgtgagcgccagtgatgttgatcttgctgtagcaagtaaagctattatttttggctttaatgttagaactccgggtgctgtgaagagctatgctgacaataaaggtgttgaaatccgactatacaaagttatctatgatcttattgatgatgtacgaaaagcaatggagggacttctggaatcagttgaggaacaagtgccaattggttcagcagaagtacgtgctgttttcagcagtggtagtggtcgtgttgctggatgcatggtaacagagggaaaagtagtggaagaatgtggtgttcgtgtcactagaaaaggcaaagcagttcatgttggtgtggtcgaatctttaagacgggtgaaggaaactgtgaaagaggttaatgcgggactggagtgtggtattggggttgaagatttcgatgactttgaggtgggtgatattctggaggctttcaactcagttcagaaaagacgaacactcgaggaggcctcagcatcaatggcagcagcacttgaagaagtggggagaggcctgtgaagaaactagaggtgagttattgcgtggcggttatagttggggttatacatggctcctctcctcatgcataggtttaatcaattgctagaggagtgcgatgatcagcacatcacgttgggtagttttgccggttgtttgtcaaatatacttgatgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="74539" stop="70590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74239" g_stop="74193" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74192" i_stop="73251" i_length="942">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73250" g_stop="72975" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="323" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72974" i_stop="72451" i_length="524">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72450" g_stop="72262" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="512" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72261" i_stop="71211" i_length="1051">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71210" g_stop="70890" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="832" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E704990" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74239" e_stop="74193"/>
          <exon e_start="73250" e_stop="72975"/>
          <exon e_start="72450" e_stop="72262"/>
          <exon e_start="71210" e_stop="70890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAGACTTGCACCAACTAAATATTATTCTGAAAGTTGATCTTCAGGTTAAATATCTTCTTTTTTTTTTTAACTTTAGAAAAGGCTGTAAAGCATTATAAGAATTCTGTTAGCTTCTCTAGAGAGATATTTCAAGAATTATGTGAATGAACACTGTTTTGAAATTCTTAGAGCAGTTAACTTTATGGAGGCTTTCAACTAATAAAGTTATATCATTATAAGAGTCTATATTAGATCTTCAAGAAGAGTACAACTTCCTAGTTTCTTTTGGTTCATCTTTCACTCGCTTAATAGCGACATTGATTTAATGCTGACTCTTTGTATTATTCAGTGCTAGCCAAGAAAATAAAATGGACCTTCTAATTGCTGAGGTGCCCCAAATTCATCTCTCTGTTTTTTTTTGCGTTGCTGTAAGACCTCAAGAGATGATAATGCAGATTTTTTGTTTTCTGCTTGTGGGATGCATGTTGTAAATGGCAGTGATAATCATTCTTAGGCTATATGTGTGGCCTTTGGCAGTTTAAATGCATACATTTAGATGGTGCATTTAGCTGGACAAATTTTTTGATTGTTACCCATCTGTTGCTGACAGTTTTACTGTTTAATTTTTGTTGGACCATGTCTCAATTTGTTTCAAGTATTTAATACCTTTAAATGCAACAGTGCGCGATCTTATTGAAGAAGATCTAAACTATATCTTTCCTTTTTTTGGTTCCACAAACAGCAATCAACTGTTCAAATTTAGGTTTTTGAATTTTAATATATGCAGATTTTTTGTTTTAAGTTGGCTATTTTAAGCTCTCTATGCTTGATAAAATTATTGAGATACATTTTAAGATCATTCTTCAAATCATTTTTGGCGCACCATCGTTTAAAAGACCAATAATACCTATATCCCGTCAGTCATATACATGTAATACATTTGATGATCCCTACTAACTGGTAGTTGCCTTGTTACATACTAACTGCTATCCCTGAATCCTGTATAGGGATCCATTGAGGCCGTCAGACAAGCTCTTCAGGTTCTTCCACAGGATAATGTCACTTTGAAGTTCCTACTGCAAGCTACTGGTGATGTGAGCGCCAGTGATGTTGATCTTGCTGTAGCAAGTAAAGCTATTATTTTTGGCTTTAATGTTAGAACTCCGGGTGCTGTGAAGAGCTATGCTGACAATAAAGGTGTTGAAATCCGACTATACAAAGTTATCTATGATCTTATTGATGATGTACGAAAAGCAATGGAGGGACTTCTGGAATCAGTTGAGGTAAACATGCATAAATATGTTTGTCATGTATCTATTTGACATTTCCTGAGTGAATTGAGTGGCTGGGATTTTTGTAGATCAGTCACGTTCACAGTTACATAGTTTAATCTCACAACTTTAATTAAATCTACTTATACTCAATAGATTTTTGCTTTCTATTGTTTAAAAAAAGGCTTGAGAACCTATTATTGTGATCTCTTCATCTCATGATGCTAAATTTGCGTTCTGTTTCTTGCTGAAATTACCTGTGGATCGAGGGGAAGGGGTGAATTGTAGATTACAGTAACTTGTAGAGTTTCAAGGGTTTAATCTCATTACTTCACTTGAGTTTTAAAGTGTTCAAATAATTGGAGTTTTTGGTGGAAAAGGAACATATCTACCAACCTTTTTTGTGGGAAAATGTTATCTTTTTGTTTTTTTTTTTGTTTTTCCTTTTTCATGTCAAAATGTTATAATGTTTTCTGTTGGATCCTATGGACTTGGAAGTATTTGAAAATGATGTGATTCTCTTCGTATGTTTGCAGGAACAAGTGCCAATTGGTTCAGCAGAAGTACGTGCTGTTTTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTAACAGAGGGAAAAGTAGTGGAAGAATGTGGTGTTCGTGTCACTAGAAAAGGCAAAGCAGTTCATGTTGGTGTGGTCGAATCTTTAAGACGGGTGAAGGAAACTGTGAAAGAGGTATACAAACAAACACTTTACTTTTTTAGATAATTTAGGGAAAAAAAAATACAATGCCTTCAGTTTTTCTATATCAAGAAAGAAAGGATAATCAAAAGCAAAGAAAAAGAAAAATGGAAAAATGCTTTTTGTGTGCTTTTAAGCAACTTATTTAGTGTTAATTAAGGCTATATGATTGGTGAAACATACTAGCACTTTCTGCTGACTTTAAGGGTTACCTGGAATGGGAAAGCAGATAATTGGATCGTAGCATTTATGTGTCTTGTACATTTTTTATTTAGTTGTTTGGCACTAAGATACTCCAGCAGTTGAATATTACTATATACAAAAGCATTTCCCCATCATTCAGCTAAAATCTCCTCGAATGTGAAAAAGCTCTTGTCGCTTTTTGTATACTTCCCAATTGAATCATAAAAACCGCTTCAACCGGACAACTGTTTTATCTGGTCTTCTTCTTTCCTCCTCGCCTGCAACCTCCTTCCATGGCAGATAGGAACGACAGTTACAGAAATTTTTTGGTCGAGGTTTGCTTGAAGCTGAGAAGAGTCCTGTAGTGACAATTTGATATTCTGGAATTTTTGAAGTGTAGTTACTAGTTAGGTTATCGTATCTTGTCTTTGTCTAAAAATAGAAAACTTACAAGTCGAAGTGGCAAGTGGCACTGAGACCCTCTTTAACTGCATATCCATGATTAGCTTTTACCCCTTAGCTGCTTCATCAACTTGGATTTCTTTTTTATTTTGCATTATACATAAAAAATCATTCATCTGGAGTTTCTTCCTCTGTGTATGCTGTCAGTTATTCCAGGCAAATAGGTCTTTCGCCCTTGAGATAGAGAGGTTTTTTGTTGGATTTATGCGGGAAGTATTATTCCAATTCTTGGTGAAGGACTGACAAAATTAACAATTGTTGAAACCTGAGTCCTAAATTTCTATTTCGTCTAAATTCTATATTGTCGTTACAAATTCAGGCTATGCATATATCCTTACACAAGTAGCCAAAAATTGTTTGCTCGGTTGTCCTGATATACTACCATTTCCGTTTTTGACAGGTTAATGCGGGACTGGAGTGTGGTATTGGGGTTGAAGATTTCGATGACTTTGAGGTGGGTGATATTCTGGAGGCTTTCAACTCAGTTCAGAAAAGACGAACACTCGAGGAGGCCTCAGCATCAATGGCAGCAGCACTTGAAGAAGTGGGGAGAGGCCTGTGAAGAAACTAGAGGTGAGTTATTGCGTGGCGGTTATAGTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGT</genome_strand>
        <mrna_strand>GTCTAGACTTGCACCAACTAAATATTATTCTGAAAGTTGATCTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCCATTGAGGCCGTCAGACAAGCTCTTCAGGTTCTTCCACAGGATAATGTCACTTTGAAGTTCCTACTGCAAGCTACTGGTGATGTGAGCGCCAGTGATGTTGATCTTGCTGTAGCAAGTAAAGCTATTATTTTTGGCTTTAATGTTAGAACTCCGGGTGCTGTGAAGAGCTATGCTGACAATAAAGGTGTTGAAATCCGACTATACAAAGTTATCTATGATCTTATTGATGATGTACGAAAAGCAATGGAGGGACTTCTGGAATCAGTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAGTGCCAATTGGTTCAGCAGAAGTACGTGCTGTTTTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTAACAGAGGGAAAAGTAGTGGAAGAATGTGGTGTTCGTGTCACTAGAAAAGGCAAAGCAGTTCATGTTGGTGTGGTCGAATCTTTAAGACGGGTGAAGGAAACTGTGAAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATGCGGGACTGGAGTGTGGTATTGGGGTTGAAGATTTCGATGACTTTGAGGTGGGTGATATTCTGGAGGCTTTCAACTCAGTTCAGAAAAGACGAACACTCGAGGAGGCCTCAGCATCAATGGCAGCAGCACTTGAAGAAGTGGGGAGAGGCCTGTGAAGAAACTAGAGGTGAGTTATTGCGTGGCGGTTATAGTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGT-AGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730882" ref_strand="+" ref_description="SGN-E730882 [LA25CA01]">
      <seq>cctttaagggattgaggccgtcagacaagctcttcaggttctcctacaggataatgtcactttgaagttcctactgcaagctactggtgatgtgagcgccagtgatgttgatcttgctgtaacaagtaaagctattatttttggctttaatgttagaactccgggtgctgtgaagagctatgctgacaataaaggtgttgaaatccgactatacaaagttatctatgatcttattgatgatgtacgaaaagcaatggagggacttctggaatcagttgaggaacaagtgccaattggttcagcagaagtacgtgctgttttcagcagtggtagtggtcgtgttgctggatgcatggtaacagagggaaaagtagtggaagaatgtggtgttcgtgtcactagaaaaggcaaagcagttcatgttggtgtggtcgaatctttaagacgggtgaaggaaactgtgaaagaggttaatgcgggactggagtgtggtattggggttgaagatttcgatgactttgaggtgggtgatattctggaggctttcaactcagttcagaaaagacgaacactcgaggaggcctcagcatcaacggcagcagcacttgaagaagtggggagaggcctgtgaagaaactagaggtgagttattgcgtggcggttatagttggggttatacatggctcctctcctcatgcataggtttaatcaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="73544" stop="70663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73250" g_stop="72975" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="280" r_length="276" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72974" i_stop="72451" i_length="524">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72450" g_stop="72262" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="469" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72261" i_stop="71211" i_length="1051">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71210" g_stop="70963" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="717" r_length="248" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E730882" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73250" e_stop="72975"/>
          <exon e_start="72450" e_stop="72262"/>
          <exon e_start="71210" e_stop="70963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCATTGAGGCCGTCAGACAAGCTCTTCAGGTTCTTCCACAGGATAATGTCACTTTGAAGTTCCTACTGCAAGCTACTGGTGATGTGAGCGCCAGTGATGTTGATCTTGCTGTAGCAAGTAAAGCTATTATTTTTGGCTTTAATGTTAGAACTCCGGGTGCTGTGAAGAGCTATGCTGACAATAAAGGTGTTGAAATCCGACTATACAAAGTTATCTATGATCTTATTGATGATGTACGAAAAGCAATGGAGGGACTTCTGGAATCAGTTGAGGTAAACATGCATAAATATGTTTGTCATGTATCTATTTGACATTTCCTGAGTGAATTGAGTGGCTGGGATTTTTGTAGATCAGTCACGTTCACAGTTACATAGTTTAATCTCACAACTTTAATTAAATCTACTTATACTCAATAGATTTTTGCTTTCTATTGTTTAAAAAAAGGCTTGAGAACCTATTATTGTGATCTCTTCATCTCATGATGCTAAATTTGCGTTCTGTTTCTTGCTGAAATTACCTGTGGATCGAGGGGAAGGGGTGAATTGTAGATTACAGTAACTTGTAGAGTTTCAAGGGTTTAATCTCATTACTTCACTTGAGTTTTAAAGTGTTCAAATAATTGGAGTTTTTGGTGGAAAAGGAACATATCTACCAACCTTTTTTGTGGGAAAATGTTATCTTTTTGTTTTTTTTTTTGTTTTTCCTTTTTCATGTCAAAATGTTATAATGTTTTCTGTTGGATCCTATGGACTTGGAAGTATTTGAAAATGATGTGATTCTCTTCGTATGTTTGCAGGAACAAGTGCCAATTGGTTCAGCAGAAGTACGTGCTGTTTTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTAACAGAGGGAAAAGTAGTGGAAGAATGTGGTGTTCGTGTCACTAGAAAAGGCAAAGCAGTTCATGTTGGTGTGGTCGAATCTTTAAGACGGGTGAAGGAAACTGTGAAAGAGGTATACAAACAAACACTTTACTTTTTTAGATAATTTAGGGAAAAAAAAATACAATGCCTTCAGTTTTTCTATATCAAGAAAGAAAGGATAATCAAAAGCAAAGAAAAAGAAAAATGGAAAAATGCTTTTTGTGTGCTTTTAAGCAACTTATTTAGTGTTAATTAAGGCTATATGATTGGTGAAACATACTAGCACTTTCTGCTGACTTTAAGGGTTACCTGGAATGGGAAAGCAGATAATTGGATCGTAGCATTTATGTGTCTTGTACATTTTTTATTTAGTTGTTTGGCACTAAGATACTCCAGCAGTTGAATATTACTATATACAAAAGCATTTCCCCATCATTCAGCTAAAATCTCCTCGAATGTGAAAAAGCTCTTGTCGCTTTTTGTATACTTCCCAATTGAATCATAAAAACCGCTTCAACCGGACAACTGTTTTATCTGGTCTTCTTCTTTCCTCCTCGCCTGCAACCTCCTTCCATGGCAGATAGGAACGACAGTTACAGAAATTTTTTGGTCGAGGTTTGCTTGAAGCTGAGAAGAGTCCTGTAGTGACAATTTGATATTCTGGAATTTTTGAAGTGTAGTTACTAGTTAGGTTATCGTATCTTGTCTTTGTCTAAAAATAGAAAACTTACAAGTCGAAGTGGCAAGTGGCACTGAGACCCTCTTTAACTGCATATCCATGATTAGCTTTTACCCCTTAGCTGCTTCATCAACTTGGATTTCTTTTTTATTTTGCATTATACATAAAAAATCATTCATCTGGAGTTTCTTCCTCTGTGTATGCTGTCAGTTATTCCAGGCAAATAGGTCTTTCGCCCTTGAGATAGAGAGGTTTTTTGTTGGATTTATGCGGGAAGTATTATTCCAATTCTTGGTGAAGGACTGACAAAATTAACAATTGTTGAAACCTGAGTCCTAAATTTCTATTTCGTCTAAATTCTATATTGTCGTTACAAATTCAGGCTATGCATATATCCTTACACAAGTAGCCAAAAATTGTTTGCTCGGTTGTCCTGATATACTACCATTTCCGTTTTTGACAGGTTAATGCGGGACTGGAGTGTGGTATTGGGGTTGAAGATTTCGATGACTTTGAGGTGGGTGATATTCTGGAGGCTTTCAACTCAGTTCAGAAAAGACGAACACTCGAGGAGGCCTCAGCATCAATGGCAGCAGCACTTGAAGAAGTGGGGAGAGGCCTGTGAAGAAACTAGAGGTGAGTTATTGCGTGGCGGTTATAGTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCT</genome_strand>
        <mrna_strand>TAAGGGATTGAGGCCGTCAGACAAGCTCTTCAGGTTCTCCTACAGGATAATGTCACTTTGAAGTTCCTACTGCAAGCTACTGGTGATGTGAGCGCCAGTGATGTTGATCTTGCTGTAACAAGTAAAGCTATTATTTTTGGCTTTAATGTTAGAACTCCGGGTGCTGTGAAGAGCTATGCTGACAATAAAGGTGTTGAAATCCGACTATACAAAGTTATCTATGATCTTATTGATGATGTACGAAAAGCAATGGAGGGACTTCTGGAATCAGTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAGTGCCAATTGGTTCAGCAGAAGTACGTGCTGTTTTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTAACAGAGGGAAAAGTAGTGGAAGAATGTGGTGTTCGTGTCACTAGAAAAGGCAAAGCAGTTCATGTTGGTGTGGTCGAATCTTTAAGACGGGTGAAGGAAACTGTGAAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATGCGGGACTGGAGTGTGGTATTGGGGTTGAAGATTTCGATGACTTTGAGGTGGGTGATATTCTGGAGGCTTTCAACTCAGTTCAGAAAAGACGAACACTCGAGGAGGCCTCAGCATCAACGGCAGCAGCACTTGAAGAAGTGGGGAGAGGCCTGTGAAGAAACTAGAGGTGAGTTATTGCGTGGCGGTTATAGTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540326" ref_strand="+" ref_description="SGN-E540326 [TUS-60-I17]">
      <seq>cggaattcggcctcagacaaatgaggctatagcacatgccaaggctgccggagttccaattgtgattgccataaataaggttgataaggatggagcaaatcccgaccgagtcatgcaagaactttccaccattggtttgatgccggaagattggggcggcgacgttccaatggttaagatcagtgctcttaaaggagagaatatagatgatttgctggaaatggtcatgcttgttgccgagttgcaagagttgaaggctaatcctcaaagaaatgccaaggggactgtgattgaggcaggtctcgataaatctaaaggacctgtagcaacgttcattgtgcagaatggtacactgaaaggaggagatgtagtagtttgtggtggagcttatggaaaggtgcgggctctgtttgatgataagggaaaacgtgttgatgaagcaggaccctccatgcctgtgcaggtgattggactgaacaatgttccatttgctggtgacgagtttgaggttgttgagtcccttgatattgctcgtgaaaaggctgaagaacgagcggagtccttgcggagtgaacgtttatcggaaaaggccggagatgggaaaattacactctcttcttttgcttctgctgtttcaggaggaactggtctagacttgcaccaactaaatattattctgaaagttgatcttcagggatccattgaggccgtcagacaagctcttcagggtctttcacaggataatgtcactttggagttcctactgcaagctactggtgatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="77136" stop="72860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76836" g_stop="76758" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76757" i_stop="76665" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76664" g_stop="76566" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="178" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76565" i_stop="76490" i_length="76">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76489" g_stop="76427" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="241" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76426" i_stop="75675" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75674" g_stop="75519" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="397" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75518" i_stop="75292" i_length="227">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75291" g_stop="75226" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="463" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75225" i_stop="74424" i_length="802">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74423" g_stop="74193" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="694" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74192" i_stop="73251" i_length="942">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73250" g_stop="73160" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="785" r_length="91" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E540326" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76836" e_stop="76758"/>
          <exon e_start="76664" e_stop="76566"/>
          <exon e_start="76489" e_stop="76427"/>
          <exon e_start="75674" e_stop="75519"/>
          <exon e_start="75291" e_stop="75226"/>
          <exon e_start="74423" e_stop="74193"/>
          <exon e_start="73250" e_stop="73160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATTCGGCCTCAGACAAATGAGGCTATAGCACATGCCAAGGCTGCCGGAGTTCCAATTGTGATTGCCATAAATAAGGTCTTATTCACATATATGTGCTTAGTCTCACCTTTTCTCTTACTTTTTGGTAAAATTTTGTCAATTGATTCCCTTGCCTCCTTCTAATTTCAGGTTGATAAGGATGGAGCAAATCCCGACCGAGTCATGCAAGAACTTTCCACCATTGGTTTGATGCCGGAAGATTGGGGCGGCGACGTTCCAATGGTTAAGGTAGACAAACTGCAAACTATGCGGCAACACCTTTCTGGTTATATCAGCATTCATCCATTTCTTTTTGATTGGACAGATCAGTGCTCTTAAAGGAGAGAATATAGATGATTTGCTGGAAATGGTCATGCTTGTTGCCGAGGTAAGATGATGTTGCGACTGCCTGTTTTATTTGATGCTTTTAGGTTTTTCTTACTTTAATCTTCGAAAATCCCATCATATATGTCTCGACCACTGCTGGTGCCAAGGCACGGTGACACATACCATTTAGTAGGTTTAATATGTCTCTTTTTAGGAGATTCTTTTGCTTGTTTTTGTTGCACATTCTGCATACTTATCCTAGTACTCCTTCCATTCATTTTATGTGTCTTAGTTTGACTGAATACATAGTTAATAATGCAAAGAGTACCTTTGAATTTAAGGTGTGCATGCTTTAGTAACATACTTGTGGTCTTACACATGTCATGTCATTCCTATAAGAAGTTTCATTAGGGGTAAAATGTAGGAGCTAAAAACTTACTACATATAAAAAGGCGGCGCTTGTAAATGAGCTTACAATCTCACTACTTTTGTGACTATCTAACCTGCATCTTCCTGATGCCATTTATACCATTTTTTACTTGATAAAAGAAAAGGTGGTGTTCATTTTGAAAGACTAGAAAAGAAAGTAATATGCACAAATTGAGACAGAGGGGATACTAAGCACTGATTACTGAATATCCTTGGAGCTGGAAGGTCAAAAGTATAAACTAGTTTTTTGAATATTGTCCTCCATTTTCTGATCTTTCTCCCATAATTTTGTTTAAGACCTTAGTTATAGGAAGAGAAAAAGTATAAAAACATTCTGTGCAAGAGTTATAGGTCTTATCTAAAGTTGTTTTTTCTCTGCTGCAGTTGCAAGAGTTGAAGGCTAATCCTCAAAGAAATGCCAAGGGGACTGTGATTGAGGCAGGTCTCGATAAATCTAAAGGACCTGTAGCAACGTTCATTGTGCAGAATGGTACACTGAAAGGAGGAGATGTAGTAGTTTGTGGTGGAGCTTATGGAAAGGTTAGCAAATTAGAACTTGAAAAGAATTTGGGAAGTGCTTTTTTACTTAGATCACTGTTTTCTGTTTTCCCTCTACGGATGATTCTAAGGGTTCAATAGAGGTTGATTTGGCTTATAAAAAATTCATTGTCTAGTCCTACATATGTATTCAGCAATGAGTATGTTTCTAATTGATCATTTTCTACAATTTTCCCCATATGAAATAATACGTGGTTTACATCTTCAAGGTGCGGGCTCTGTTTGATGATAAGGGAAAACGTGTTGATGAAGCAGGACCCTCCATGCCTGTGCAGGTATGCTTCCTTTTATTGTATCTTCTTTTCCTCCCATTTACTCTGCCAATTAAGTGTCCTCAGCTGCACCTTGTACTAGATTTCCTCTTAAGAGGTCATGGACTAACTATTCGTCACAAACAGGAAGCTCCTGCCATTTCGGTGGAAGTATAATTTAGCCATGCTTCAGAAGTTGCTATCAGTGACTTCTGTAGATAATAAATTACAACTAAACAAAATTCCTATTAGATTCAAGGATGGACCATGTCACTATGGGTTGTTAAATGGCCAGTCTATTCATGTCATAACACCTCTTTTATTTGTCTTATCCTTGTGAGATTTAAAATCTCTTAGCCATGTGGCCAACCAAAATAAAGTGACATTTACAATATTATAGCCAAATGTCTTACCCAAAAAAAAAGCTCTATTAACCGTTTTCTGCCATTTGTGTCTTATACATAGTGAAATTCTTGACTGAACACAACATCCCTGACTAGCTTTTAATGTTTACTCCGTCTGTGTTTCCCCAGCATTAACAAAATTATGTACCTTATAAAAAAAAGAGCACTCGCTCTGTCTTTGTATGTGTATATTTTTCTAGGGATAATTATAGTACGACGTCTTTGGGTGATATAGTTTACAAAATAACCAGCAAATGTATAGGTTTTGTATATTTTAGTATATACTATACATAATCACTGTATAGCTTTTATATATTTCGGCCATATTGGTAATAAGTATGAACAAACTGGACATATAGGTAAGTTTCCCTATTTTATATGTGTGTGTCTTTAAATACTCAACATGATTGGCCAATACATAGGTGATTGGACTGAACAATGTTCCATTTGCTGGTGACGAGTTTGAGGTTGTTGAGTCCCTTGATATTGCTCGTGAAAAGGCTGAAGAACGAGCGGAGTCCTTGCGGAGTGAACGTTTATCGGAAAAGGCCGGAGATGGGAAAATTACACTCTCTTCTTTTGCTTCTGCTGTTTCAGGAGGAACTGGTCTAGACTTGCACCAACTAAATATTATTCTGAAAGTTGATCTTCAGGTTAAATATCTTCTTTTTTTTTTTAACTTTAGAAAAGGCTGTAAAGCATTATAAGAATTCTGTTAGCTTCTCTAGAGAGATATTTCAAGAATTATGTGAATGAACACTGTTTTGAAATTCTTAGAGCAGTTAACTTTATGGAGGCTTTCAACTAATAAAGTTATATCATTATAAGAGTCTATATTAGATCTTCAAGAAGAGTACAACTTCCTAGTTTCTTTTGGTTCATCTTTCACTCGCTTAATAGCGACATTGATTTAATGCTGACTCTTTGTATTATTCAGTGCTAGCCAAGAAAATAAAATGGACCTTCTAATTGCTGAGGTGCCCCAAATTCATCTCTCTGTTTTTTTTTGCGTTGCTGTAAGACCTCAAGAGATGATAATGCAGATTTTTTGTTTTCTGCTTGTGGGATGCATGTTGTAAATGGCAGTGATAATCATTCTTAGGCTATATGTGTGGCCTTTGGCAGTTTAAATGCATACATTTAGATGGTGCATTTAGCTGGACAAATTTTTTGATTGTTACCCATCTGTTGCTGACAGTTTTACTGTTTAATTTTTGTTGGACCATGTCTCAATTTGTTTCAAGTATTTAATACCTTTAAATGCAACAGTGCGCGATCTTATTGAAGAAGATCTAAACTATATCTTTCCTTTTTTTGGTTCCACAAACAGCAATCAACTGTTCAAATTTAGGTTTTTGAATTTTAATATATGCAGATTTTTTGTTTTAAGTTGGCTATTTTAAGCTCTCTATGCTTGATAAAATTATTGAGATACATTTTAAGATCATTCTTCAAATCATTTTTGGCGCACCATCGTTTAAAAGACCAATAATACCTATATCCCGTCAGTCATATACATGTAATACATTTGATGATCCCTACTAACTGGTAGTTGCCTTGTTACATACTAACTGCTATCCCTGAATCCTGTATAGGGATCCATTGAGGCCGTCAGACAAGCTCTTCAGGTTCTTCCACAGGATAATGTCACTTTGAAGTTCCTACTGCAAGCTACTGGTGATGTGA</genome_strand>
        <mrna_strand>CGGAATTCGGCCTCAGACAAATGAGGCTATAGCACATGCCAAGGCTGCCGGAGTTCCAATTGTGATTGCCATAAATAAG.............................................................................................GTTGATAAGGATGGAGCAAATCCCGACCGAGTCATGCAAGAACTTTCCACCATTGGTTTGATGCCGGAAGATTGGGGCGGCGACGTTCCAATGGTTAAG............................................................................ATCAGTGCTCTTAAAGGAGAGAATATAGATGATTTGCTGGAAATGGTCATGCTTGTTGCCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAAGAGTTGAAGGCTAATCCTCAAAGAAATGCCAAGGGGACTGTGATTGAGGCAGGTCTCGATAAATCTAAAGGACCTGTAGCAACGTTCATTGTGCAGAATGGTACACTGAAAGGAGGAGATGTAGTAGTTTGTGGTGGAGCTTATGGAAAG...................................................................................................................................................................................................................................GTGCGGGCTCTGTTTGATGATAAGGGAAAACGTGTTGATGAAGCAGGACCCTCCATGCCTGTGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGACTGAACAATGTTCCATTTGCTGGTGACGAGTTTGAGGTTGTTGAGTCCCTTGATATTGCTCGTGAAAAGGCTGAAGAACGAGCGGAGTCCTTGCGGAGTGAACGTTTATCGGAAAAGGCCGGAGATGGGAAAATTACACTCTCTTCTTTTGCTTCTGCTGTTTCAGGAGGAACTGGTCTAGACTTGCACCAACTAAATATTATTCTGAAAGTTGATCTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCCATTGAGGCCGTCAGACAAGCTCTTCAGGGTCTTTCACAGGATAATGTCACTTTGGAGTTCCTACTGCAAGCTACTGGTGATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730429" ref_strand="+" ref_description="SGN-E730429 [LA24AD10]">
      <seq>tgaaggctaatcctcctttaaatgccaaggggactgtgattgacgcaggtctcgataaatctaaaggacctgtagcaacgctcattgtgcagaatggtacactgaaaggaggagatgtagtactttgtggtggagcttatggaaaggtgcgggctctgtttgatgataagggaaaacgtgttgatgaagcaggaccctccatgcctgtgcacgtgattggactgaacaatgttccatttgctggtgacgagtttgaggttgttgagtcccttgatattgctcgtgaaaaggctgaagaacgagcggagtccttgcggagtgaacgtttatccgataaggccggacatggcaaaattacactctcttcttttgcttctgttgtttcaagaggaactggtctagacttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="75945" stop="73927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75664" g_stop="75519" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75518" i_stop="75292" i_length="227">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75291" g_stop="75226" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="212" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75225" i_stop="74424" i_length="802">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74423" g_stop="74227" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="409" r_length="197" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E730429" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75664" e_stop="75519"/>
          <exon e_start="75291" e_stop="75226"/>
          <exon e_start="74423" e_stop="74227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGCTAATCCTCAAAGAAATGCCAAGGGGACTGTGATTGAGGCAGGTCTCGATAAATCTAAAGGACCTGTAGCAACGTTCATTGTGCAGAATGGTACACTGAAAGGAGGAGATGTAGTAGTTTGTGGTGGAGCTTATGGAAAGGTTAGCAAATTAGAACTTGAAAAGAATTTGGGAAGTGCTTTTTTACTTAGATCACTGTTTTCTGTTTTCCCTCTACGGATGATTCTAAGGGTTCAATAGAGGTTGATTTGGCTTATAAAAAATTCATTGTCTAGTCCTACATATGTATTCAGCAATGAGTATGTTTCTAATTGATCATTTTCTACAATTTTCCCCATATGAAATAATACGTGGTTTACATCTTCAAGGTGCGGGCTCTGTTTGATGATAAGGGAAAACGTGTTGATGAAGCAGGACCCTCCATGCCTGTGCAGGTATGCTTCCTTTTATTGTATCTTCTTTTCCTCCCATTTACTCTGCCAATTAAGTGTCCTCAGCTGCACCTTGTACTAGATTTCCTCTTAAGAGGTCATGGACTAACTATTCGTCACAAACAGGAAGCTCCTGCCATTTCGGTGGAAGTATAATTTAGCCATGCTTCAGAAGTTGCTATCAGTGACTTCTGTAGATAATAAATTACAACTAAACAAAATTCCTATTAGATTCAAGGATGGACCATGTCACTATGGGTTGTTAAATGGCCAGTCTATTCATGTCATAACACCTCTTTTATTTGTCTTATCCTTGTGAGATTTAAAATCTCTTAGCCATGTGGCCAACCAAAATAAAGTGACATTTACAATATTATAGCCAAATGTCTTACCCAAAAAAAAAGCTCTATTAACCGTTTTCTGCCATTTGTGTCTTATACATAGTGAAATTCTTGACTGAACACAACATCCCTGACTAGCTTTTAATGTTTACTCCGTCTGTGTTTCCCCAGCATTAACAAAATTATGTACCTTATAAAAAAAAGAGCACTCGCTCTGTCTTTGTATGTGTATATTTTTCTAGGGATAATTATAGTACGACGTCTTTGGGTGATATAGTTTACAAAATAACCAGCAAATGTATAGGTTTTGTATATTTTAGTATATACTATACATAATCACTGTATAGCTTTTATATATTTCGGCCATATTGGTAATAAGTATGAACAAACTGGACATATAGGTAAGTTTCCCTATTTTATATGTGTGTGTCTTTAAATACTCAACATGATTGGCCAATACATAGGTGATTGGACTGAACAATGTTCCATTTGCTGGTGACGAGTTTGAGGTTGTTGAGTCCCTTGATATTGCTCGTGAAAAGGCTGAAGAACGAGCGGAGTCCTTGCGGAGTGAACGTTTATCGGAAAAGGCCGGAGATGGGAAAATTACACTCTCTTCTTTTGCTTCTGCTGTTTCAGGAGGAACTGGTCTAGACTTGCA</genome_strand>
        <mrna_strand>TGAAGGCTAATCCTCCTTTAAATGCCAAGGGGACTGTGATTGACGCAGGTCTCGATAAATCTAAAGGACCTGTAGCAACGCTCATTGTGCAGAATGGTACACTGAAAGGAGGAGATGTAGTACTTTGTGGTGGAGCTTATGGAAAG...................................................................................................................................................................................................................................GTGCGGGCTCTGTTTGATGATAAGGGAAAACGTGTTGATGAAGCAGGACCCTCCATGCCTGTGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGACTGAACAATGTTCCATTTGCTGGTGACGAGTTTGAGGTTGTTGAGTCCCTTGATATTGCTCGTGAAAAGGCTGAAGAACGAGCGGAGTCCTTGCGGAGTGAACGTTTATCCGATAAGGCCGGACATGGCAAAATTACACTCTCTTCTTTTGCTTCTGTTGTTTCAAGAGGAACTGGTCTAGACTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286898" ref_strand="+" ref_description="SGN-E286898 [cLES-14-L24]">
      <seq>ggaattcggcctcagacaaatgaggctatagcacatgccaaggctgccggagttccaattgtgattgccataaataaggttgataaggatggagcaaatcccgaccgagtcatgcaagaactttccaccattggtttgatgccggaagattggggcggcgacgttccaatggttaagatcagtgctcttaaaggagagaatatagatgatttgctggaaatggtcatgcttgttgccgagttgcaagagttgaaggctaatcctcaaagaaatgccaaggggactgtgattgaggcaggtctcgataaatctaaaggacctgtagcaacgttcattgtgcagaatggtacactgaaaggaggagatgtagtagtttgtggtggagcttatggaaaggtgcgggctctgtttgatgataagggaaaacgtgttgatgaagcaggaccctccatgcctgtgcaggtgattggactgaacaatgttccatttgctggtgacgagtttgaggttgttgagtcccttgatattgctcgtgaaaaggctgaagaacgagcggagtccttgcggagtgaacgtttatcggaaaaggccggaaatgggaaaattacactctcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="77135" stop="73967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76835" g_stop="76758" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76757" i_stop="76665" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76664" g_stop="76566" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="177" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76565" i_stop="76490" i_length="76">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76489" g_stop="76427" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="240" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76426" i_stop="75675" i_length="752">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75674" g_stop="75519" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="396" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75518" i_stop="75292" i_length="227">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75291" g_stop="75226" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="462" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75225" i_stop="74424" i_length="802">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74423" g_stop="74267" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="619" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E286898" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76835" e_stop="76758"/>
          <exon e_start="76664" e_stop="76566"/>
          <exon e_start="76489" e_stop="76427"/>
          <exon e_start="75674" e_stop="75519"/>
          <exon e_start="75291" e_stop="75226"/>
          <exon e_start="74423" e_stop="74267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTCGGCCTCAGACAAATGAGGCTATAGCACATGCCAAGGCTGCCGGAGTTCCAATTGTGATTGCCATAAATAAGGTCTTATTCACATATATGTGCTTAGTCTCACCTTTTCTCTTACTTTTTGGTAAAATTTTGTCAATTGATTCCCTTGCCTCCTTCTAATTTCAGGTTGATAAGGATGGAGCAAATCCCGACCGAGTCATGCAAGAACTTTCCACCATTGGTTTGATGCCGGAAGATTGGGGCGGCGACGTTCCAATGGTTAAGGTAGACAAACTGCAAACTATGCGGCAACACCTTTCTGGTTATATCAGCATTCATCCATTTCTTTTTGATTGGACAGATCAGTGCTCTTAAAGGAGAGAATATAGATGATTTGCTGGAAATGGTCATGCTTGTTGCCGAGGTAAGATGATGTTGCGACTGCCTGTTTTATTTGATGCTTTTAGGTTTTTCTTACTTTAATCTTCGAAAATCCCATCATATATGTCTCGACCACTGCTGGTGCCAAGGCACGGTGACACATACCATTTAGTAGGTTTAATATGTCTCTTTTTAGGAGATTCTTTTGCTTGTTTTTGTTGCACATTCTGCATACTTATCCTAGTACTCCTTCCATTCATTTTATGTGTCTTAGTTTGACTGAATACATAGTTAATAATGCAAAGAGTACCTTTGAATTTAAGGTGTGCATGCTTTAGTAACATACTTGTGGTCTTACACATGTCATGTCATTCCTATAAGAAGTTTCATTAGGGGTAAAATGTAGGAGCTAAAAACTTACTACATATAAAAAGGCGGCGCTTGTAAATGAGCTTACAATCTCACTACTTTTGTGACTATCTAACCTGCATCTTCCTGATGCCATTTATACCATTTTTTACTTGATAAAAGAAAAGGTGGTGTTCATTTTGAAAGACTAGAAAAGAAAGTAATATGCACAAATTGAGACAGAGGGGATACTAAGCACTGATTACTGAATATCCTTGGAGCTGGAAGGTCAAAAGTATAAACTAGTTTTTTGAATATTGTCCTCCATTTTCTGATCTTTCTCCCATAATTTTGTTTAAGACCTTAGTTATAGGAAGAGAAAAAGTATAAAAACATTCTGTGCAAGAGTTATAGGTCTTATCTAAAGTTGTTTTTTCTCTGCTGCAGTTGCAAGAGTTGAAGGCTAATCCTCAAAGAAATGCCAAGGGGACTGTGATTGAGGCAGGTCTCGATAAATCTAAAGGACCTGTAGCAACGTTCATTGTGCAGAATGGTACACTGAAAGGAGGAGATGTAGTAGTTTGTGGTGGAGCTTATGGAAAGGTTAGCAAATTAGAACTTGAAAAGAATTTGGGAAGTGCTTTTTTACTTAGATCACTGTTTTCTGTTTTCCCTCTACGGATGATTCTAAGGGTTCAATAGAGGTTGATTTGGCTTATAAAAAATTCATTGTCTAGTCCTACATATGTATTCAGCAATGAGTATGTTTCTAATTGATCATTTTCTACAATTTTCCCCATATGAAATAATACGTGGTTTACATCTTCAAGGTGCGGGCTCTGTTTGATGATAAGGGAAAACGTGTTGATGAAGCAGGACCCTCCATGCCTGTGCAGGTATGCTTCCTTTTATTGTATCTTCTTTTCCTCCCATTTACTCTGCCAATTAAGTGTCCTCAGCTGCACCTTGTACTAGATTTCCTCTTAAGAGGTCATGGACTAACTATTCGTCACAAACAGGAAGCTCCTGCCATTTCGGTGGAAGTATAATTTAGCCATGCTTCAGAAGTTGCTATCAGTGACTTCTGTAGATAATAAATTACAACTAAACAAAATTCCTATTAGATTCAAGGATGGACCATGTCACTATGGGTTGTTAAATGGCCAGTCTATTCATGTCATAACACCTCTTTTATTTGTCTTATCCTTGTGAGATTTAAAATCTCTTAGCCATGTGGCCAACCAAAATAAAGTGACATTTACAATATTATAGCCAAATGTCTTACCCAAAAAAAAAGCTCTATTAACCGTTTTCTGCCATTTGTGTCTTATACATAGTGAAATTCTTGACTGAACACAACATCCCTGACTAGCTTTTAATGTTTACTCCGTCTGTGTTTCCCCAGCATTAACAAAATTATGTACCTTATAAAAAAAAGAGCACTCGCTCTGTCTTTGTATGTGTATATTTTTCTAGGGATAATTATAGTACGACGTCTTTGGGTGATATAGTTTACAAAATAACCAGCAAATGTATAGGTTTTGTATATTTTAGTATATACTATACATAATCACTGTATAGCTTTTATATATTTCGGCCATATTGGTAATAAGTATGAACAAACTGGACATATAGGTAAGTTTCCCTATTTTATATGTGTGTGTCTTTAAATACTCAACATGATTGGCCAATACATAGGTGATTGGACTGAACAATGTTCCATTTGCTGGTGACGAGTTTGAGGTTGTTGAGTCCCTTGATATTGCTCGTGAAAAGGCTGAAGAACGAGCGGAGTCCTTGCGGAGTGAACGTTTATCGGAAAAGGCCGGAGATGGGAAAATTACACTCTCTTCTT</genome_strand>
        <mrna_strand>GGAATTCGGCCTCAGACAAATGAGGCTATAGCACATGCCAAGGCTGCCGGAGTTCCAATTGTGATTGCCATAAATAAG.............................................................................................GTTGATAAGGATGGAGCAAATCCCGACCGAGTCATGCAAGAACTTTCCACCATTGGTTTGATGCCGGAAGATTGGGGCGGCGACGTTCCAATGGTTAAG............................................................................ATCAGTGCTCTTAAAGGAGAGAATATAGATGATTTGCTGGAAATGGTCATGCTTGTTGCCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAAGAGTTGAAGGCTAATCCTCAAAGAAATGCCAAGGGGACTGTGATTGAGGCAGGTCTCGATAAATCTAAAGGACCTGTAGCAACGTTCATTGTGCAGAATGGTACACTGAAAGGAGGAGATGTAGTAGTTTGTGGTGGAGCTTATGGAAAG...................................................................................................................................................................................................................................GTGCGGGCTCTGTTTGATGATAAGGGAAAACGTGTTGATGAAGCAGGACCCTCCATGCCTGTGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGACTGAACAATGTTCCATTTGCTGGTGACGAGTTTGAGGTTGTTGAGTCCCTTGATATTGCTCGTGAAAAGGCTGAAGAACGAGCGGAGTCCTTGCGGAGTGAACGTTTATCGGAAAAGGCCGGAAATGGGAAAATTACACTCTCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277169" ref_strand="-" ref_description="SGN-E277169 [cLEL-3-D22](-)">
      <seq>agaattcggcacgagatttgctggaaatggtcatgcttgttgccgagttgcaagagttgaagtctgatcctcaaagaaatgccaaggcgactgtgattgaggcaggtctcgataaatctaaaggacctgtagcaacgttcattgtgcagaatggtacactgaaaggaggagatgtagtagtttgtggtggagcttatggaaaggtgcgggctctgtttgatgataagggaaaacgtgttgatgaagcaggaccctccatgcctgtgcaggtgattggactgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="76762" stop="74922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76475" g_stop="76427" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.796"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76426" i_stop="75675" i_length="752">
            <donor d_prob="1.000" d_score="0.80"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75674" g_stop="75519" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="203" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75518" i_stop="75292" i_length="227">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75291" g_stop="75226" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="269" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E277169" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277169" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76475" e_stop="76427"/>
          <exon e_start="75674" e_stop="75519"/>
          <exon e_start="75291" e_stop="75226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAGAATATAGATGATTTGCTGGAAATGGTCATGCTTGTTGCCGAGGTAAGATGATGTTGCGACTGCCTGTTTTATTTGATGCTTTTAGGTTTTTCTTACTTTAATCTTCGAAAATCCCATCATATATGTCTCGACCACTGCTGGTGCCAAGGCACGGTGACACATACCATTTAGTAGGTTTAATATGTCTCTTTTTAGGAGATTCTTTTGCTTGTTTTTGTTGCACATTCTGCATACTTATCCTAGTACTCCTTCCATTCATTTTATGTGTCTTAGTTTGACTGAATACATAGTTAATAATGCAAAGAGTACCTTTGAATTTAAGGTGTGCATGCTTTAGTAACATACTTGTGGTCTTACACATGTCATGTCATTCCTATAAGAAGTTTCATTAGGGGTAAAATGTAGGAGCTAAAAACTTACTACATATAAAAAGGCGGCGCTTGTAAATGAGCTTACAATCTCACTACTTTTGTGACTATCTAACCTGCATCTTCCTGATGCCATTTATACCATTTTTTACTTGATAAAAGAAAAGGTGGTGTTCATTTTGAAAGACTAGAAAAGAAAGTAATATGCACAAATTGAGACAGAGGGGATACTAAGCACTGATTACTGAATATCCTTGGAGCTGGAAGGTCAAAAGTATAAACTAGTTTTTTGAATATTGTCCTCCATTTTCTGATCTTTCTCCCATAATTTTGTTTAAGACCTTAGTTATAGGAAGAGAAAAAGTATAAAAACATTCTGTGCAAGAGTTATAGGTCTTATCTAAAGTTGTTTTTTCTCTGCTGCAGTTGCAAGAGTTGAAGGCTAATCCTCAAAGAAATGCCAAGGGGACTGTGATTGAGGCAGGTCTCGATAAATCTAAAGGACCTGTAGCAACGTTCATTGTGCAGAATGGTACACTGAAAGGAGGAGATGTAGTAGTTTGTGGTGGAGCTTATGGAAAGGTTAGCAAATTAGAACTTGAAAAGAATTTGGGAAGTGCTTTTTTACTTAGATCACTGTTTTCTGTTTTCCCTCTACGGATGATTCTAAGGGTTCAATAGAGGTTGATTTGGCTTATAAAAAATTCATTGTCTAGTCCTACATATGTATTCAGCAATGAGTATGTTTCTAATTGATCATTTTCTACAATTTTCCCCATATGAAATAATACGTGGTTTACATCTTCAAGGTGCGGGCTCTGTTTGATGATAAGGGAAAACGTGTTGATGAAGCAGGACCCTCCATGCCTGTGCAG</genome_strand>
        <mrna_strand>AGAATTCGGCA-CGA-GATTTGCTGGAAATGGTCATGCTTGTTGCCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAAGAGTTGAAGTCTGATCCTCAAAGAAATGCCAAGGCGACTGTGATTGAGGCAGGTCTCGATAAATCTAAAGGACCTGTAGCAACGTTCATTGTGCAGAATGGTACACTGAAAGGAGGAGATGTAGTAGTTTGTGGTGGAGCTTATGGAAAG...................................................................................................................................................................................................................................GTGCGGGCTCTGTTTGATGATAAGGGAAAACGTGTTGATGAAGCAGGACCCTCCATGCCTGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735699" ref_strand="+" ref_description="SGN-E735699 [LC02CF08]">
      <seq>aagcaaagtgattgaaatcacattgaaaaagaattaaaaacaacgagaaaaaactagaaactggggggggacaaatgtttcggttaacaaggcgtctgccaatgcacgtactacacaaagaaatagcaagacagttgattctgatgattcttccaacaggaagtcgaaaactttgaagagtgtctggaaaaaagggaatccgattgctgctgtacaaaaagttgtaaaaccaccccctaaacaggaaccaatgactgatggtggaaggaatagtgaatcccaaagtgttgctccaataaaaccccctcagccaccccagaaagttcaaccacagttactagcaagaccatctgtagctcctcctcctcctattatcaagaaaccggtgatattgaaggatgttggtgctgcggcgaagtccccaccctctgatggagttgaatctgttggaaagaccaaagaacttgaagcagctggaaagaccaaagaacgcaagacaatattggttgataaatttgcctccaagaaatcagctgttgatcctgtgattgctcaagctgttttagcccctcctaaatttggaaagagcgcacctcctggtaaattcagggaggagttccgtaaaaagagtggtgtatctggaggacaacgcaggcgtatggttgatgatgggattcccgacgaggaagcatcagagcttgatgtttctcttcctggtagagcaaggaagggaaggaagtggactaaggcaagtcgcaaggcagctcgacttaaggctgctcaagagtctgcacctgtcaaagtaaaaattctagaggttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="78802" stop="77450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78500" g_stop="77750" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="823" r_length="751" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E735699" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78500" e_stop="77750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTTCGGTTAACAAGGCGTCTGCCAGTGCACGTACTACACAAAGAAATAGCAAGACAGTTGATTCTGATGATTCTTCCAACAGGAAGTCGAAAACTTTGAAGAGTGTCTGGAAAAAAGGGAATCCGATTGCTGCTGTACAAAAAGTTGTAAAACCACCCCCTAAACAGGAACCAATGACTGATGGTGGAAGGAATAGTGAATCCCAAAGTGTTGCTCCAATAAAACCCCCTCAGCCACCCCAGAAAGTTCAACCACAGTTACTAGCAAGACCATCTGTAGCTCCTCCTCCTCCTATTATCAAGAAACCGGTGATATTGAAGGATGTTGGTGCTGCGGCGAAGTCCCCACCCTCTGATGGAGTTGAATCTGTTGGAAAGACCAAAGAACTTGAAGCAGCTGGAAAGACCAAAGAACGCAAGACAATATTGGTTGATAAATTTGCCTCCAAGAAATCAGCTGTTGATCCTGTGATTGCTCAAGCTGTTTTAGCCCCTCCTAAATTTGGAAAGAGCGCACCTCCTGGTAAATTCAGGGAGGAGTTCCGTAAAAAGAGTGGTGTATCTGGAGGACAACGCAGGCGTATGGTTGATGATGGGATTCCCGACGAGGAAGCATCAGAGCTTGATGTTTCTCTTCCTGGTAGAGCAAGGAAGGGAAGGAAGTGGACTAAGGCAAGTCGCAAGGCAGCTCGACTTAAGGCTGCTCAAGAGTCTGCACCTGTCAAAGTAGAAATTCTAGAGGTTGGT</genome_strand>
        <mrna_strand>AAATGTTTCGGTTAACAAGGCGTCTGCCAATGCACGTACTACACAAAGAAATAGCAAGACAGTTGATTCTGATGATTCTTCCAACAGGAAGTCGAAAACTTTGAAGAGTGTCTGGAAAAAAGGGAATCCGATTGCTGCTGTACAAAAAGTTGTAAAACCACCCCCTAAACAGGAACCAATGACTGATGGTGGAAGGAATAGTGAATCCCAAAGTGTTGCTCCAATAAAACCCCCTCAGCCACCCCAGAAAGTTCAACCACAGTTACTAGCAAGACCATCTGTAGCTCCTCCTCCTCCTATTATCAAGAAACCGGTGATATTGAAGGATGTTGGTGCTGCGGCGAAGTCCCCACCCTCTGATGGAGTTGAATCTGTTGGAAAGACCAAAGAACTTGAAGCAGCTGGAAAGACCAAAGAACGCAAGACAATATTGGTTGATAAATTTGCCTCCAAGAAATCAGCTGTTGATCCTGTGATTGCTCAAGCTGTTTTAGCCCCTCCTAAATTTGGAAAGAGCGCACCTCCTGGTAAATTCAGGGAGGAGTTCCGTAAAAAGAGTGGTGTATCTGGAGGACAACGCAGGCGTATGGTTGATGATGGGATTCCCGACGAGGAAGCATCAGAGCTTGATGTTTCTCTTCCTGGTAGAGCAAGGAAGGGAAGGAAGTGGACTAAGGCAAGTCGCAAGGCAGCTCGACTTAAGGCTGCTCAAGAGTCTGCACCTGTCAAAGTAAAAATTCTAGAGGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737130" ref_strand="+" ref_description="SGN-E737130 [LC08CD04]">
      <seq>gacctggccctgttttagggaatggaccagtccttagctctaattctgatggtgaaaaaagaaatcctattgaagaagagagaagcaaggtgattgagtcacttggagaggcattagagacagcggagaagctagaaactaacagaaaaacaaatgtttcggttaacaaggcgtctgccagtgcacgtactacacaaagaaatagcaagacagttgattctgatgattcttccaacaggaagtcgaaaactttgaagagtgtctggaaaaaagggaatccgattgctgctgtacaaaaagttgtaaaaccaccccctaaacaggaaccaatgactgatggtggaaggaatagtgaatcccaaagtgttgctccaataaaaccccctcagccaccccagaaagttcaaccacagttactagcaagaccatctgtagctcctcctcctcctattatcaagaaaccggtgatattgaaggatgttggtgctgcggcgaagtccccaccctctgatggagttgaatctgttggaaagaccaaagaacttgaagcagctggaaagaccaaagaacgcaagacaatattggttgataaatttgcctccaagaaatcagctgttgatcctgtgattgctcaagctgttttagcccctcctaaatttggaaagagcgcacctcctggtaaattcagggaggagttccgtaaaaagagtggtgtatctggaggacaacgcaggcgtatggttgatgatgggattcccgacgaggaagcatcagagcttgatgtttctcttcctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="78951" stop="77555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78651" g_stop="77855" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E737130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78651" e_stop="77855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGGCCCTGTTTTAGGGAATGGACCAGTCCTTAGCTCTAATTCTGATGGTGAAAAAAGAAATCCTATTGAAGAAGAGAGAAGCAAGGTGATTGAGTCACTTGGAGAGGCATTAGAGACAGCGGAGAAGCTAGAAACTAACAGAAAAACAAATGTTTCGGTTAACAAGGCGTCTGCCAGTGCACGTACTACACAAAGAAATAGCAAGACAGTTGATTCTGATGATTCTTCCAACAGGAAGTCGAAAACTTTGAAGAGTGTCTGGAAAAAAGGGAATCCGATTGCTGCTGTACAAAAAGTTGTAAAACCACCCCCTAAACAGGAACCAATGACTGATGGTGGAAGGAATAGTGAATCCCAAAGTGTTGCTCCAATAAAACCCCCTCAGCCACCCCAGAAAGTTCAACCACAGTTACTAGCAAGACCATCTGTAGCTCCTCCTCCTCCTATTATCAAGAAACCGGTGATATTGAAGGATGTTGGTGCTGCGGCGAAGTCCCCACCCTCTGATGGAGTTGAATCTGTTGGAAAGACCAAAGAACTTGAAGCAGCTGGAAAGACCAAAGAACGCAAGACAATATTGGTTGATAAATTTGCCTCCAAGAAATCAGCTGTTGATCCTGTGATTGCTCAAGCTGTTTTAGCCCCTCCTAAATTTGGAAAGAGCGCACCTCCTGGTAAATTCAGGGAGGAGTTCCGTAAAAAGAGTGGTGTATCTGGAGGACAACGCAGGCGTATGGTTGATGATGGGATTCCCGACGAGGAAGCATCAGAGCTTGATGTTTCTCTTCCTGGT</genome_strand>
        <mrna_strand>GACCTGGCCCTGTTTTAGGGAATGGACCAGTCCTTAGCTCTAATTCTGATGGTGAAAAAAGAAATCCTATTGAAGAAGAGAGAAGCAAGGTGATTGAGTCACTTGGAGAGGCATTAGAGACAGCGGAGAAGCTAGAAACTAACAGAAAAACAAATGTTTCGGTTAACAAGGCGTCTGCCAGTGCACGTACTACACAAAGAAATAGCAAGACAGTTGATTCTGATGATTCTTCCAACAGGAAGTCGAAAACTTTGAAGAGTGTCTGGAAAAAAGGGAATCCGATTGCTGCTGTACAAAAAGTTGTAAAACCACCCCCTAAACAGGAACCAATGACTGATGGTGGAAGGAATAGTGAATCCCAAAGTGTTGCTCCAATAAAACCCCCTCAGCCACCCCAGAAAGTTCAACCACAGTTACTAGCAAGACCATCTGTAGCTCCTCCTCCTCCTATTATCAAGAAACCGGTGATATTGAAGGATGTTGGTGCTGCGGCGAAGTCCCCACCCTCTGATGGAGTTGAATCTGTTGGAAAGACCAAAGAACTTGAAGCAGCTGGAAAGACCAAAGAACGCAAGACAATATTGGTTGATAAATTTGCCTCCAAGAAATCAGCTGTTGATCCTGTGATTGCTCAAGCTGTTTTAGCCCCTCCTAAATTTGGAAAGAGCGCACCTCCTGGTAAATTCAGGGAGGAGTTCCGTAAAAAGAGTGGTGTATCTGGAGGACAACGCAGGCGTATGGTTGATGATGGGATTCCCGACGAGGAAGCATCAGAGCTTGATGTTTCTCTTCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736953" ref_strand="+" ref_description="SGN-E736953 [LC07DG01]">
      <seq>ccggttgatgatgctgatcttatgcttaagccggctcctaagccacaattgaaacctggacccagacctggccctgttttagggaatggaccagtccttagctctaattctgatggtgaaaaaagaaatcctattgaagaagagagaagcaaggtgattgagtcacttggagaggcattagagacagcggagaagctagaaactaacagaaaaacaaatgtttcggttaacaaggcgtctgccagtgcacgtactacacaaagaaatagcaagacagttgattctgatgattcttccaacaggaagtcgaaaactttgaagagtgtctggaaaaaagggaatccgattgctgctgtacaaaaagttgtaaaaccaccccctaaacaggaaccaatgactgatggtggaaggaatagtgaatcccaaagtgttgctccaataaaaccccctcagccaccccagaaagttcaaccacagttactagcaagaccatctgtagctcctcctcctcctattatcaagaaaccggtgatattgaaggatgttggtgctgcggcgaagtccccaccctctgatggagttgaatctgttggaaagaccaaagaacttgaagcagctggaaagaccaaagaacgcaagacaatattggttgataaatttgcctccaagaaatcagctgttgatcctgtgattgctcaagctgttttagcccctcctaaattttggaaagagcgcccctcctgggtaaattcagggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="79013" stop="77660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78715" g_stop="77960" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E736953" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78715" e_stop="77960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATGATGATGCTGATCTTATGCTTAAGCCGGCTCCTAAGCCACAATTGAAACCTGGACCCAGACCTGGCCCTGTTTTAGGGAATGGACCAGTCCTTAGCTCTAATTCTGATGGTGAAAAAAGAAATCCTATTGAAGAAGAGAGAAGCAAGGTGATTGAGTCACTTGGAGAGGCATTAGAGACAGCGGAGAAGCTAGAAACTAACAGAAAAACAAATGTTTCGGTTAACAAGGCGTCTGCCAGTGCACGTACTACACAAAGAAATAGCAAGACAGTTGATTCTGATGATTCTTCCAACAGGAAGTCGAAAACTTTGAAGAGTGTCTGGAAAAAAGGGAATCCGATTGCTGCTGTACAAAAAGTTGTAAAACCACCCCCTAAACAGGAACCAATGACTGATGGTGGAAGGAATAGTGAATCCCAAAGTGTTGCTCCAATAAAACCCCCTCAGCCACCCCAGAAAGTTCAACCACAGTTACTAGCAAGACCATCTGTAGCTCCTCCTCCTCCTATTATCAAGAAACCGGTGATATTGAAGGATGTTGGTGCTGCGGCGAAGTCCCCACCCTCTGATGGAGTTGAATCTGTTGGAAAGACCAAAGAACTTGAAGCAGCTGGAAAGACCAAAGAACGCAAGACAATATTGGTTGATAAATTTGCCTCCAAGAAATCAGCTGTTGATCCTGTGATTGCTCAAGCTGTTTTAGCCCCTCCTAAA-TTTGGAAAGAGCGCACCTCCT-GGTAAATTCAGGGAG</genome_strand>
        <mrna_strand>CCGGTTGATGATGCTGATCTTATGCTTAAGCCGGCTCCTAAGCCACAATTGAAACCTGGACCCAGACCTGGCCCTGTTTTAGGGAATGGACCAGTCCTTAGCTCTAATTCTGATGGTGAAAAAAGAAATCCTATTGAAGAAGAGAGAAGCAAGGTGATTGAGTCACTTGGAGAGGCATTAGAGACAGCGGAGAAGCTAGAAACTAACAGAAAAACAAATGTTTCGGTTAACAAGGCGTCTGCCAGTGCACGTACTACACAAAGAAATAGCAAGACAGTTGATTCTGATGATTCTTCCAACAGGAAGTCGAAAACTTTGAAGAGTGTCTGGAAAAAAGGGAATCCGATTGCTGCTGTACAAAAAGTTGTAAAACCACCCCCTAAACAGGAACCAATGACTGATGGTGGAAGGAATAGTGAATCCCAAAGTGTTGCTCCAATAAAACCCCCTCAGCCACCCCAGAAAGTTCAACCACAGTTACTAGCAAGACCATCTGTAGCTCCTCCTCCTCCTATTATCAAGAAACCGGTGATATTGAAGGATGTTGGTGCTGCGGCGAAGTCCCCACCCTCTGATGGAGTTGAATCTGTTGGAAAGACCAAAGAACTTGAAGCAGCTGGAAAGACCAAAGAACGCAAGACAATATTGGTTGATAAATTTGCCTCCAAGAAATCAGCTGTTGATCCTGTGATTGCTCAAGCTGTTTTAGCCCCTCCTAAATTTTGGAAAGAGCGCCCCTCCTGGGTAAATTCAGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738010" ref_strand="+" ref_description="SGN-E738010 [LC12AA10]">
      <seq>cctttttgtatatccgttcactttgatttcaattccttctcagccactcacttctttcatctttgtctatctctctgtacacacaaactaacaccagctaactgtgtgttggtaacttaacccttggctctctattgctcttccactcctcattagccaatttcttatgcaagaacaaggtcattacttcataaaggttcttgatttttgatatttggaggtgaattttgggaagtgaggattttaagtgctacattgttgttaggtagtttttgtggggatttggttggataagtaaatggttgaggtgtaagttaagtgtacagagagatgagtagtatggcttccctggtgagtttggggagtgtgtgtggatgttcttctggacagtttgaagggtcattctcactagttaggagggtttctttttcgaagaattttggaagcgtaaatagaatttggggtgggaaaagatggcgttatgtttctgtttgtagatattcagtcaccacggatttcgttgctgatcaggggacatcaatatctcttgaatcctcatccagtagtaataaggatgatgatgctgatcttatgcttaagccggctcctaagccacaattgaaacctggacccagacctggccctgttttagggaatggaccagtccttagctctaattctgatggtgaaaaaagaaatcctattgaagaagagagaagcaaggtgattgagtcacttggagaggcattagagacagcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="79728" stop="78226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79432" g_stop="79237" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79236" i_stop="79090" i_length="147">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79089" g_stop="78526" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="760" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E738010" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79432" e_stop="79237"/>
          <exon e_start="79089" e_stop="78526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTGTATATCCGTTCACTTTGATTTCAATTCCTTCTCAGCCACTCGCTTCTTTCATCTTTGTCTATCTCTCTGTACACACAAACTAACACCAGCTAACTGTGTGTTGGTAACTTAACCCTTGGCTCTCTATTGCTCTTCCACTCCTCATTAGCCAATTTCTTATGCAAGAACAAGGTCATTACTTCATAAAGGTAACACCTTTTCAGCTCCCATGTGATAAATAGAAGAAATTCCATCTGGGGTTCCTTTCTTGATTTCAAAAAGATTAGATTTTTATTAGTTTTTTGCTTTAGTTTTCATGATTCTGGTTATTGAATTGAATTTCATTGTATACCCAGGTTCTTGATTTTTGATATTTGGAGGTGAATTTTGGGAAGTGAGGATTTTAAGTGCTACATTGTTGTTAGGTAGTTTTTGTGGGGATTTGGTTGGATAAGTAAATGGTTGAGGTGTAAGTTAAGTGTACAGAGAGATGAGTAGTATGGCTTCCCTGGTGAGTTTGGGGAGTGTGTGTGGATGTTCTTCTGGACAGTTTGAAGGGTCATTCTCACTAGTTAGGAGGGTTTCTTTTTCGAAGAATTTTGGAAGCGTAAATAGAATTTGGGGTGGGAAAAGATGGCGTTATGTTTCTGTTTGTAGATATTCAGTCACCACGGATTTCGTTGCTGATCAGGGGACATCAATATCTCTTGAATCCTCATCCAGTAGTAATAAGGATGATGATGCTGATCTTATGCTTAAGCCGGCTCCTAAGCCACAATTGAAACCTGGACCCAGACCTGGCCCTGTTTTAGGGAATGGACCAGTCCTTAGCTCTAATTCTGATGGTGAAAAAAGAAATCCTATTGAAGAAGAGAGAAGCAAGGTGATTGAGTCACTTGGAGAGGCATTAGAGACAGCGG</genome_strand>
        <mrna_strand>CCTTTTTGTATATCCGTTCACTTTGATTTCAATTCCTTCTCAGCCACTCACTTCTTTCATCTTTGTCTATCTCTCTGTACACACAAACTAACACCAGCTAACTGTGTGTTGGTAACTTAACCCTTGGCTCTCTATTGCTCTTCCACTCCTCATTAGCCAATTTCTTATGCAAGAACAAGGTCATTACTTCATAAAG...................................................................................................................................................GTTCTTGATTTTTGATATTTGGAGGTGAATTTTGGGAAGTGAGGATTTTAAGTGCTACATTGTTGTTAGGTAGTTTTTGTGGGGATTTGGTTGGATAAGTAAATGGTTGAGGTGTAAGTTAAGTGTACAGAGAGATGAGTAGTATGGCTTCCCTGGTGAGTTTGGGGAGTGTGTGTGGATGTTCTTCTGGACAGTTTGAAGGGTCATTCTCACTAGTTAGGAGGGTTTCTTTTTCGAAGAATTTTGGAAGCGTAAATAGAATTTGGGGTGGGAAAAGATGGCGTTATGTTTCTGTTTGTAGATATTCAGTCACCACGGATTTCGTTGCTGATCAGGGGACATCAATATCTCTTGAATCCTCATCCAGTAGTAATAAGGATGATGATGCTGATCTTATGCTTAAGCCGGCTCCTAAGCCACAATTGAAACCTGGACCCAGACCTGGCCCTGTTTTAGGGAATGGACCAGTCCTTAGCTCTAATTCTGATGGTGAAAAAAGAAATCCTATTGAAGAAGAGAGAAGCAAGGTGATTGAGTCACTTGGAGAGGCATTAGAGACAGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738458" ref_strand="+" ref_description="SGN-E738458 [LC13CH07]">
      <seq>ccttttccactcctcattagccaatttcttatgcaagaacaaggtcattacttcataaaggtaacaccttttcagctcccatgtgataaatagaagaaattccatctggggttcctttcttgatttcaaaaagattagatttttattagttttttgctttagttttcatgattctggttattgaattgaatttcattgtatacccaggttcttgatttttgatatttggaggtgaattttgggaagtgaggattttaagtgctacattgttgttaggtagtttttgtggggatttggttggataagtaaatggttgaggtgtaagttaagtgtacagagagatgagtagtatggcttccctggtgagtttggggagtgtgtgtggatgttcttctggacagtttgaagggtcattctcactagttaggagggtttctttttcgaagaattttggaagcgtaaatagaatttggggtgggaaaagatggcgttatgtttctgtttgtagatattcagtcaccacggatttcgttgctgatcaggggacatcaatatctcttgaatcctcatccagtagtaataaggatgatgatgctgatcttatgcttaagccggctcctaagccacaattgaaacctggacccagacctggccctgttttagggaatggaccagtccttagctctaattctgatggtgaaaaaagaaatcctattgaagaagagagaagcaaggtgattggagtcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="79595" stop="78248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79296" g_stop="78548" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E738458" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79296" e_stop="78548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTCCACTCCTCATTAGCCAATTTCTTATGCAAGAACAAGGTCATTACTTCATAAAGGTAACACCTTTTCAGCTCCCATGTGATAAATAGAAGAAATTCCATCTGGGGTTCCTTTCTTGATTTCAAAAAGATTAGATTTTTATTAGTTTTTTGCTTTAGTTTTCATGATTCTGGTTATTGAATTGAATTTCATTGTATACCCAGGTTCTTGATTTTTGATATTTGGAGGTGAATTTTGGGAAGTGAGGATTTTAAGTGCTACATTGTTGTTAGGTAGTTTTTGTGGGGATTTGGTTGGATAAGTAAATGGTTGAGGTGTAAGTTAAGTGTACAGAGAGATGAGTAGTATGGCTTCCCTGGTGAGTTTGGGGAGTGTGTGTGGATGTTCTTCTGGACAGTTTGAAGGGTCATTCTCACTAGTTAGGAGGGTTTCTTTTTCGAAGAATTTTGGAAGCGTAAATAGAATTTGGGGTGGGAAAAGATGGCGTTATGTTTCTGTTTGTAGATATTCAGTCACCACGGATTTCGTTGCTGATCAGGGGACATCAATATCTCTTGAATCCTCATCCAGTAGTAATAAGGATGATGATGCTGATCTTATGCTTAAGCCGGCTCCTAAGCCACAATTGAAACCTGGACCCAGACCTGGCCCTGTTTTAGGGAATGGACCAGTCCTTAGCTCTAATTCTGATGGTGAAAAAAGAAATCCTATTGAAGAAGAGAGAAGCAAGGTGATT-GAGTCACTT</genome_strand>
        <mrna_strand>CCTTTTCCACTCCTCATTAGCCAATTTCTTATGCAAGAACAAGGTCATTACTTCATAAAGGTAACACCTTTTCAGCTCCCATGTGATAAATAGAAGAAATTCCATCTGGGGTTCCTTTCTTGATTTCAAAAAGATTAGATTTTTATTAGTTTTTTGCTTTAGTTTTCATGATTCTGGTTATTGAATTGAATTTCATTGTATACCCAGGTTCTTGATTTTTGATATTTGGAGGTGAATTTTGGGAAGTGAGGATTTTAAGTGCTACATTGTTGTTAGGTAGTTTTTGTGGGGATTTGGTTGGATAAGTAAATGGTTGAGGTGTAAGTTAAGTGTACAGAGAGATGAGTAGTATGGCTTCCCTGGTGAGTTTGGGGAGTGTGTGTGGATGTTCTTCTGGACAGTTTGAAGGGTCATTCTCACTAGTTAGGAGGGTTTCTTTTTCGAAGAATTTTGGAAGCGTAAATAGAATTTGGGGTGGGAAAAGATGGCGTTATGTTTCTGTTTGTAGATATTCAGTCACCACGGATTTCGTTGCTGATCAGGGGACATCAATATCTCTTGAATCCTCATCCAGTAGTAATAAGGATGATGATGCTGATCTTATGCTTAAGCCGGCTCCTAAGCCACAATTGAAACCTGGACCCAGACCTGGCCCTGTTTTAGGGAATGGACCAGTCCTTAGCTCTAATTCTGATGGTGAAAAAAGAAATCCTATTGAAGAAGAGAGAAGCAAGGTGATTGGAGTCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365817" ref_strand="+" ref_description="SGN-E365817 [cLPT-8-G2]">
      <seq>acttaacccttggctctctattgttcttccactcctcattagccaatttcttatgcaagaacaagctcgttacttcataaaggttcttgatttttgatttttggaggtgaattttgggaagtgaggattttaagtgctgcattgttgttaggtagtttttgtggggatttggttggataagtaaatgtttgaggtgtaagttaaagtgtacagagagatgagtagtatggcttccctggtgagtttggggagtgtgtgtggatgttcttctggacagtttgaagggtcattttcactagttaggagggtttctttttcgaagaattttggaagcgtaaatagaatttggggtggaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="79618" stop="78512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79318" g_stop="79237" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79236" i_stop="79090" i_length="147">
            <donor d_prob="0.938" d_score="0.96"/>
            <acceptor a_prob="0.717" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79089" g_stop="78812" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="361" r_length="279" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E365817" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79318" e_stop="79237"/>
          <exon e_start="79089" e_stop="78812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAACCCTTGGCTCTCTATTGCTCTTCCACTCCTCATTAGCCAATTTCTTATGCAAGAACAAGGTCATTACTTCATAAAGGTAACACCTTTTCAGCTCCCATGTGATAAATAGAAGAAATTCCATCTGGGGTTCCTTTCTTGATTTCAAAAAGATTAGATTTTTATTAGTTTTTTGCTTTAGTTTTCATGATTCTGGTTATTGAATTGAATTTCATTGTATACCCAGGTTCTTGATTTTTGATATTTGGAGGTGAATTTTGGGAAGTGAGGATTTTAAGTGCTACATTGTTGTTAGGTAGTTTTTGTGGGGATTTGGTTGGATAAGTAAATGGTTGAGGTGTAAGTT-AAGTGTACAGAGAGATGAGTAGTATGGCTTCCCTGGTGAGTTTGGGGAGTGTGTGTGGATGTTCTTCTGGACAGTTTGAAGGGTCATTCTCACTAGTTAGGAGGGTTTCTTTTTCGAAGAATTTTGGAAGCGTAAATAGAATTTGGGGTGGGAAAAGA</genome_strand>
        <mrna_strand>ACTTAACCCTTGGCTCTCTATTGTTCTTCCACTCCTCATTAGCCAATTTCTTATGCAAGAACAAGCTCGTTACTTCATAAAG...................................................................................................................................................GTTCTTGATTTTTGATTTTTGGAGGTGAATTTTGGGAAGTGAGGATTTTAAGTGCTGCATTGTTGTTAGGTAGTTTTTGTGGGGATTTGGTTGGATAAGTAAATGTTTGAGGTGTAAGTTAAAGTGTACAGAGAGATGAGTAGTATGGCTTCCCTGGTGAGTTTGGGGAGTGTGTGTGGATGTTCTTCTGGACAGTTTGAAGGGTCATTTTCACTAGTTAGGAGGGTTTCTTTTTCGAAGAATTTTGGAAGCGTAAATAGAATTTGGGGTGGAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737417" ref_strand="+" ref_description="SGN-E737417 [LC09CH11]">
      <seq>cacaaactaggaccagctaactgcctgttggtaacttaacccttggctctctattgctcttccactcctcattagccaatttcttatgcaagaacaaggtcattacttcataaaggtaacaccttttcagctcccatgtgataaatagaagaaattccatctggggttcctttcttgatttcaaaaagattagatttttattagttttttgctttagttttcatgattctggttattgaattgaatttcattgtatacccaggttcttgatttttgatatttggaggtgaattttgggaagtgaggattttaagtgctaccttgttgtctaggtactttttgtggggatttggctggataagtaaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="79651" stop="78683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79351" g_stop="78983" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E737417" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79351" e_stop="78983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACTAACACCAGCTAACTGTGTGTTGGTAACTTAACCCTTGGCTCTCTATTGCTCTTCCACTCCTCATTAGCCAATTTCTTATGCAAGAACAAGGTCATTACTTCATAAAGGTAACACCTTTTCAGCTCCCATGTGATAAATAGAAGAAATTCCATCTGGGGTTCCTTTCTTGATTTCAAAAAGATTAGATTTTTATTAGTTTTTTGCTTTAGTTTTCATGATTCTGGTTATTGAATTGAATTTCATTGTATACCCAGGTTCTTGATTTTTGATATTTGGAGGTGAATTTTGGGAAGTGAGGATTTTAAGTGCTACATTGTTGT-TAGGTAGTTTTTGTGGGGATTTGGTTGGATAAGTAAATGGT</genome_strand>
        <mrna_strand>CACAAACTAGGACCAGCTAACTGCCTGTTGGTAACTTAACCCTTGGCTCTCTATTGCTCTTCCACTCCTCATTAGCCAATTTCTTATGCAAGAACAAGGTCATTACTTCATAAAGGTAACACCTTTTCAGCTCCCATGTGATAAATAGAAGAAATTCCATCTGGGGTTCCTTTCTTGATTTCAAAAAGATTAGATTTTTATTAGTTTTTTGCTTTAGTTTTCATGATTCTGGTTATTGAATTGAATTTCATTGTATACCCAGGTTCTTGATTTTTGATATTTGGAGGTGAATTTTGGGAAGTGAGGATTTTAAGTGCTACCTTGTTGTCTAGGTACTTTTTGTGGGGATTTGGCTGGATAAGTAAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737963" ref_strand="+" ref_description="SGN-E737963 [LC11DD10]">
      <seq>catacaagtatagctctcaacaccatcaccgaaagagagaaaacccacaccattatacacgcattttcacacagtagaaggtgaaaaatcatgaaggaagaagctataagctcttcccatgatcctcaattgccgcccaaatcatcgtctcctccccctatccctacacctgctgctagttccgtaggggcatcatctccagcagttccaacaaatgctgggggcacagattggtttgcacaagcacagggttcaaaagcagcttcactttcccgtattggttcacagcccatgtggacttcagttagcaatagtgctggtggttctgcactaggatcatcacaaccttcatgtagaccatgggaaaggggtgatctattgaggcgtctgtccactttccaacccacaaactggtttgggaagccaaaggcttcaagctcactggcttgtgctagaagaggctgggtgaatgtggatgctgatacgattgagtgtgaagcttgtggtgctaatctgagattcgtttcttctgcaacatggacctctggtgaagctgatatcgcgggggaagaatttgcaaagaaacttgatgaagggcacaaggccacttgcccttggcgaggaaacagctgtgcagaaagcttggtccagttccctcctacaccaccatcagccttaattggtggttataaggatcgatgtgatggattgcttcagtttccttcacttccaatagtggctgcatctgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="83777" stop="88239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84077" g_stop="84255" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84256" i_stop="85255" i_length="1000">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85256" g_stop="85505" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="429" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85506" i_stop="85863" i_length="358">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85864" g_stop="85987" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="553" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85988" i_stop="87741" i_length="1754">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87742" g_stop="87939" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="751" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E737963" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84077" e_stop="84255"/>
          <exon e_start="85256" e_stop="85505"/>
          <exon e_start="85864" e_stop="85987"/>
          <exon e_start="87742" e_stop="87939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAGTATAGCTCTCAACACCATCACCGAAAGAGAGAAAACCCACACCATTATACACGCATTTTCACACAGTAGAAGGTGAAAAATCATGAAGGAAGAAGCTATAAGCTCTTCCCATGATCCTCAATTGCCGCCCAAATCATCGTCTCCTCCCCCTATCCCTACACCTGCTGCTAGGTAAACCCTAAAACCCTAGCTTTTCAACATTTCCCCCAATTTTTTTTTTATTGCGTTTATGCTTTGAGCTTCTTGTATGCTGTTGCTTTTGATTTGCCGCTTTAATTTCGTTCTAGGGTTCTAAATTCGAGTAATGTTGTTCGGAATTTTAATCCGGCTGGTTAAATATGAGAACACAGATTTATAGGTCAACCCCTTTTAAGTCTACTTGCCATTCAGAGAAATTTCTATGTGGAGCTTAGGCTTGTTCATTAATTTGTTATGTTAGACAAGTTTTTTTTACTTATTTTGTTCTTTTTTTTTGGTAGAAAGTTATTAAGAAATGTTACCAGTTTCTAAAAAAGTACACTCATTTTGAGCGCTGCTTGTCTAGTTGTTGTATTTAGTATTTACCTTACTGGTTTGATTCTTGTTGCTTCATTCATGTAGGCTGATGACACTTCTCTTTTTTTTTTTTTTTTTGCATAAATGGTGAATTCCACATTTTAGAGTAGTGTAGTATTTGTCTGTCTGAGTATGATTTCCGTGTGATTAACCACGTCTGAATAGGGTGAAATGTATACAAAAGGAAGGTGTAGTCTTTTGTCGATGGGTTTTAAATGAACCCAAACCCATAACTTCTGGCGTGGAGTACAGTATATATCTGATTCCATAATTTTAACAGTACAATGAGTTTAATGCTGAGAATCTTAAAAGTTGAACCCATTAAATTTAATTGCTGGGTGTCCACAAACTTACAAAGGCTTAATCCCAAACTAATTGGTTTGTACAATATAGTACAAAGGCTTAATATAGTGCAACCCAATTAGTTTGGGATTGAGAAGCTGTTGATTTACGTATTGATCTTATTTCTGCATGAGATGTGTAGATGGAAGGATCTTTTTCTCACTAAAAGGAAAAGGTGTAGATTAGAAGGCACTAGTCAAAGTTGATTGTTGTCCTCCAACATTTTTAATCTGTTAGGTCAGAAGTGAATTAATAATTGAATTTTTTGATGCAGTTCCGTAGGGGCATCATCTCCAGCAGTTCCAACAAATGCTGGGGGCACAGATTGGTTTGCACAAGCACAGGGTTCAAAAGCAGCTTCACTTTCCCGTATTGGTTCACAGCCCATGTGGACTTCAGTTAGCAATAGTGCTGGTGGTTCTGCACTAGGATCATCACAACCTTCATGTAGACCATGGGAAAGGGGTGATCTATTGAGGCGTCTGTCCACTTTCCAACCCACAAACTGGTTTGGGAAGCCAAAGGTCTGGCTGAAAGATTCCTTTTGCATCATTTCTTAAGATAATTGCATGATCTGTTGAATCCCGCTTTTCCTAACCACAGAACTCCCAAAACCAATACCTGTATGTTTCCATTTCTTGGCCTGTTTTTCTTGTATGCTTATTGGGAGCTTGTTGCGGAAATTGCATGACATAGATAAGAGATACATTTTATGTTAGTTTGTCCCAGGTTTAGGATGTGGTCAGGAGCACAAGGATGTTTACGTGATAGGGTTTCAATAATTATGTTTAAGATTGTTTTTCTTTCTTATCAATTCATAAATTGTCCATCATGGTGAAGTACATACTTTGCACAACTTCTACACTGCAATTGTTGACGCAGGCTTCAAGCTCACTGGCTTGTGCTAGAAGAGGCTGGGTGAATGTGGATGCTGATACGATTGAGTGTGAAGCTTGTGGTGCTAATCTGAGATTCGTTTCTTCTGCAACATGGACCTCTGGTGAAGGTGAATTCTTGTTTTCATTGACTATTAGGCTTTATTGGTAGGTGTTTTAGTTAAAATTTTGCTTCACTAAGATACTTCTCAAAATAATTAAATTGCTGATGCAGATATCATGTTAAATTATTGTGGAGTATGACCAGTGCCAAAGAATCTGACATAATATTAATATTGTTTAAGAGGGTTCTATAATATGAAGTCTTTCTCATTTTTTGATAGTCACCAGACTGGACAACAGGGAATCTTCGGAGTTTTACATTCAGTTGAGTTTCGGTCATTAGAAGATGGTATAGTTGGTCAGCAAGTAATCTAAACGAAAGAGAAACAAACAAATCGTGACTAACATCCTCAAAATTATTTCGATGAGATATCTTTGTGTCTTCTCTTCAAAAATTTCCTAATTGTGTATTTGAGGGACGGAGAGTAGAGCATTGTATATAGAAAATGTTGTGTATCTTGCAAGAATTGTTTCCTATTCTCTCTTCTCCTACTTCTATTCTTCTAGTTGTTCTCTTTCTTTCTATGTGCTCTTAAATTCTGCCTATCTATGTTTTTGCTATTCTCATTATTTTTCCAGTCTCAAAACAGCTCTTAAGTGTAAAGAAGTTGTGTCTCAACAATGTACCTCTCCCATATTAGATCATTTTGTCCCCGATGCATTGTAGAAGTTATTTCCCGAAGTTAATCTTTAATGCAAGATCCTACTTTCAGTTGTATTGAAACCAAGGCTCTTTCCTCTGTCGCTTTCTGAGTTATTCATGGTGATACTTCAATGAAACTCCATTGTGTAAATATCTGGTTAACTTTCTGTTCTGTTCGTTTGGGAATATTTTGCGATGTTATTTACTTTTCATATTGGTATGTTAGATTCAGCCATTCTGTTATAGGAATGAGGCATTGCTAAAGCCTTCTCCATCGAGGAAAGAGTTCAGTTGGAAGAACTCTTAGGTGGATCATAAAACATGAATGATCAATATAATGTGTAGCTTGCTTTCAGCTCTAACTAGGATTTAAGTACAAGAAACATTCATCATAAGGGCATTACTTGGTTCAGAAAGTAAAATGTATTTTGTATCCTTCAGTGGTGTCATACTTACCCTGTCTATTTCTCTTTGAGTTGACTGTTTAATTAATGGGAATTTAAATAATGCTAGTTTGTAAGTTTATTTTGTACTTAGGAAGCTACATGATTCAACTGTCCCACAATAACATATGGACAATTGCAGATTACTGGTTGTTTATTATGTGATTATTGGTTATGGGTTTTATCCACCCTTTTTGTGCAAAAATCATTTTGTTCCTACTTCTTCCCTTTTCAGTGTGATCTGTTTAGCTCTCCATAATTTCTGTTAGTGTGGGATAAAGTTGCCGTAAGTTCCAGTTTGCTTTTATTCTTATTTATTCCTATGCAAGGAAGTGGATATAGTTTTCTGCTAGCCCCAACCCCCAATTATGTATGAACAGAAGTCGCTGTAGCAGCTTTTGTTGTCATTTGAATTTATATTAACCCATTTTCTGTGCCAATTATGCTGGAAGAGCAGGACCATACCGAACTGTATTCTTGCCTTTTTTGCAAAGATAAACCATATTGGAAGATACGAATCTGATTATGCTTGATACTTTATCCTATATCATTATGATACTTCCTTTTAATGTGTTTGTTTTCTATGAAGAACTTTGGTATCATCAGTGTGAGTAGTAAAATTGTTGCTTCACACATTTTGAGGAAACATTTCTCATCTGTTAGTTATTTTTGATAGCTGATATCGCGGGGGAAGAATTTGCAAAGAAACTTGATGAAGGGCACAAGGCCACTTGCCCTTGGCGAGGAAACAGCTGTGCAGAAAGCTTGGTCCAGTTCCCTCCTACACCACCATCAGCCTTAATTGGTGGTTATAAGGATCGATGTGATGGATTGCTTCAGTTTCCTTCACTTCCAATAGTGGCTGCATCTGCAA</genome_strand>
        <mrna_strand>CATACAAGTATAGCTCTCAACACCATCACCGAAAGAGAGAAAACCCACACCATTATACACGCATTTTCACACAGTAGAAGGTGAAAAATCATGAAGGAAGAAGCTATAAGCTCTTCCCATGATCCTCAATTGCCGCCCAAATCATCGTCTCCTCCCCCTATCCCTACACCTGCTGCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAGGGGCATCATCTCCAGCAGTTCCAACAAATGCTGGGGGCACAGATTGGTTTGCACAAGCACAGGGTTCAAAAGCAGCTTCACTTTCCCGTATTGGTTCACAGCCCATGTGGACTTCAGTTAGCAATAGTGCTGGTGGTTCTGCACTAGGATCATCACAACCTTCATGTAGACCATGGGAAAGGGGTGATCTATTGAGGCGTCTGTCCACTTTCCAACCCACAAACTGGTTTGGGAAGCCAAAG......................................................................................................................................................................................................................................................................................................................................................................GCTTCAAGCTCACTGGCTTGTGCTAGAAGAGGCTGGGTGAATGTGGATGCTGATACGATTGAGTGTGAAGCTTGTGGTGCTAATCTGAGATTCGTTTCTTCTGCAACATGGACCTCTGGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATATCGCGGGGGAAGAATTTGCAAAGAAACTTGATGAAGGGCACAAGGCCACTTGCCCTTGGCGAGGAAACAGCTGTGCAGAAAGCTTGGTCCAGTTCCCTCCTACACCACCATCAGCCTTAATTGGTGGTTATAAGGATCGATGTGATGGATTGCTTCAGTTTCCTTCACTTCCAATAGTGGCTGCATCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314701" ref_strand="+" ref_description="SGN-E314701 [cTOA-20-E17]">
      <seq>acaagtatagctctcaacaccatcaccgaaagagagaaaacccacaccattatacacgcattttcacacagtagaaggtgaaaaatcatgaaggaagaagctataagctcttcccatgatcctcaattgccgcccaaatcatcgtctcctccccctatccctacacctgctgctagttccgtaggggcatcatctccagcagttccaacaaatgctgggggcacagattggtttgcacaagcacagggttcaaaagcagcttcactttcccgtattggttcacagcccatgtggacttcagttagcaatagtgctggtggttctgcactaggatcatcacaaccttcatgtagaccatgggaaaggggtgatctattgaggcgtctgtccactttccaacccacaaactggtttgggaagccaaaggcttcaagctcactggcttgtgctanaagaggctgggtgaatgtggatgctgatacgattgagtgtgaagcttgtggtgctaatctgagattcgtttcttctgcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="83780" stop="86271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84080" g_stop="84255" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84256" i_stop="85255" i_length="1000">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85256" g_stop="85505" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="426" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85506" i_stop="85863" i_length="358">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85864" g_stop="85971" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="534" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E314701" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84080" e_stop="84255"/>
          <exon e_start="85256" e_stop="85505"/>
          <exon e_start="85864" e_stop="85971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTATAGCTCTCAACACCATCACCGAAAGAGAGAAAACCCACACCATTATACACGCATTTTCACACAGTAGAAGGTGAAAAATCATGAAGGAAGAAGCTATAAGCTCTTCCCATGATCCTCAATTGCCGCCCAAATCATCGTCTCCTCCCCCTATCCCTACACCTGCTGCTAGGTAAACCCTAAAACCCTAGCTTTTCAACATTTCCCCCAATTTTTTTTTTATTGCGTTTATGCTTTGAGCTTCTTGTATGCTGTTGCTTTTGATTTGCCGCTTTAATTTCGTTCTAGGGTTCTAAATTCGAGTAATGTTGTTCGGAATTTTAATCCGGCTGGTTAAATATGAGAACACAGATTTATAGGTCAACCCCTTTTAAGTCTACTTGCCATTCAGAGAAATTTCTATGTGGAGCTTAGGCTTGTTCATTAATTTGTTATGTTAGACAAGTTTTTTTTACTTATTTTGTTCTTTTTTTTTGGTAGAAAGTTATTAAGAAATGTTACCAGTTTCTAAAAAAGTACACTCATTTTGAGCGCTGCTTGTCTAGTTGTTGTATTTAGTATTTACCTTACTGGTTTGATTCTTGTTGCTTCATTCATGTAGGCTGATGACACTTCTCTTTTTTTTTTTTTTTTTGCATAAATGGTGAATTCCACATTTTAGAGTAGTGTAGTATTTGTCTGTCTGAGTATGATTTCCGTGTGATTAACCACGTCTGAATAGGGTGAAATGTATACAAAAGGAAGGTGTAGTCTTTTGTCGATGGGTTTTAAATGAACCCAAACCCATAACTTCTGGCGTGGAGTACAGTATATATCTGATTCCATAATTTTAACAGTACAATGAGTTTAATGCTGAGAATCTTAAAAGTTGAACCCATTAAATTTAATTGCTGGGTGTCCACAAACTTACAAAGGCTTAATCCCAAACTAATTGGTTTGTACAATATAGTACAAAGGCTTAATATAGTGCAACCCAATTAGTTTGGGATTGAGAAGCTGTTGATTTACGTATTGATCTTATTTCTGCATGAGATGTGTAGATGGAAGGATCTTTTTCTCACTAAAAGGAAAAGGTGTAGATTAGAAGGCACTAGTCAAAGTTGATTGTTGTCCTCCAACATTTTTAATCTGTTAGGTCAGAAGTGAATTAATAATTGAATTTTTTGATGCAGTTCCGTAGGGGCATCATCTCCAGCAGTTCCAACAAATGCTGGGGGCACAGATTGGTTTGCACAAGCACAGGGTTCAAAAGCAGCTTCACTTTCCCGTATTGGTTCACAGCCCATGTGGACTTCAGTTAGCAATAGTGCTGGTGGTTCTGCACTAGGATCATCACAACCTTCATGTAGACCATGGGAAAGGGGTGATCTATTGAGGCGTCTGTCCACTTTCCAACCCACAAACTGGTTTGGGAAGCCAAAGGTCTGGCTGAAAGATTCCTTTTGCATCATTTCTTAAGATAATTGCATGATCTGTTGAATCCCGCTTTTCCTAACCACAGAACTCCCAAAACCAATACCTGTATGTTTCCATTTCTTGGCCTGTTTTTCTTGTATGCTTATTGGGAGCTTGTTGCGGAAATTGCATGACATAGATAAGAGATACATTTTATGTTAGTTTGTCCCAGGTTTAGGATGTGGTCAGGAGCACAAGGATGTTTACGTGATAGGGTTTCAATAATTATGTTTAAGATTGTTTTTCTTTCTTATCAATTCATAAATTGTCCATCATGGTGAAGTACATACTTTGCACAACTTCTACACTGCAATTGTTGACGCAGGCTTCAAGCTCACTGGCTTGTGCTAGAAGAGGCTGGGTGAATGTGGATGCTGATACGATTGAGTGTGAAGCTTGTGGTGCTAATCTGAGATTCGTTTCTTCTGCAACA</genome_strand>
        <mrna_strand>ACAAGTATAGCTCTCAACACCATCACCGAAAGAGAGAAAACCCACACCATTATACACGCATTTTCACACAGTAGAAGGTGAAAAATCATGAAGGAAGAAGCTATAAGCTCTTCCCATGATCCTCAATTGCCGCCCAAATCATCGTCTCCTCCCCCTATCCCTACACCTGCTGCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAGGGGCATCATCTCCAGCAGTTCCAACAAATGCTGGGGGCACAGATTGGTTTGCACAAGCACAGGGTTCAAAAGCAGCTTCACTTTCCCGTATTGGTTCACAGCCCATGTGGACTTCAGTTAGCAATAGTGCTGGTGGTTCTGCACTAGGATCATCACAACCTTCATGTAGACCATGGGAAAGGGGTGATCTATTGAGGCGTCTGTCCACTTTCCAACCCACAAACTGGTTTGGGAAGCCAAAG......................................................................................................................................................................................................................................................................................................................................................................GCTTCAAGCTCACTGGCTTGTGCTANAAGAGGCTGGGTGAATGTGGATGCTGATACGATTGAGTGTGAAGCTTGTGGTGCTAATCTGAGATTCGTTTCTTCTGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337297" ref_strand="+" ref_description="SGN-E337297 [cTOE-7-D8]">
      <seq>tatagctctcaacaccatcaccgaaagagagaaaacccacaccattatacacgcattttcacacagtagaaggtgaaaaatcatgaaggaagaagctataagctcttcccatgatcctcaattgccgcccaaatcatcgtctcctccccctatccctacacctgctgctagttccgtaggggcatcatctccagcagttccaacaaatgctgggggcacagattggtttgcacaagcacagggttcaaaagcagcttcactttcccgtattggttcacagcccatgtggacttcagttagcaatagtgctggtggttctgcactaggatcatcacaaccttcatgtagaccatgggaaaggggtgatctattgaggcgtctgtccactttccaacccacaaactggtttgggaagccaaaggcttcaagctcactggcttgtgctagaagaggctgggtgaatgtggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="83785" stop="86213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84085" g_stop="84255" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84256" i_stop="85255" i_length="1000">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85256" g_stop="85505" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="421" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85506" i_stop="85863" i_length="358">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85864" g_stop="85913" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="471" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E337297" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84085" e_stop="84255"/>
          <exon e_start="85256" e_stop="85505"/>
          <exon e_start="85864" e_stop="85913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGCTCTCAACACCATCACCGAAAGAGAGAAAACCCACACCATTATACACGCATTTTCACACAGTAGAAGGTGAAAAATCATGAAGGAAGAAGCTATAAGCTCTTCCCATGATCCTCAATTGCCGCCCAAATCATCGTCTCCTCCCCCTATCCCTACACCTGCTGCTAGGTAAACCCTAAAACCCTAGCTTTTCAACATTTCCCCCAATTTTTTTTTTATTGCGTTTATGCTTTGAGCTTCTTGTATGCTGTTGCTTTTGATTTGCCGCTTTAATTTCGTTCTAGGGTTCTAAATTCGAGTAATGTTGTTCGGAATTTTAATCCGGCTGGTTAAATATGAGAACACAGATTTATAGGTCAACCCCTTTTAAGTCTACTTGCCATTCAGAGAAATTTCTATGTGGAGCTTAGGCTTGTTCATTAATTTGTTATGTTAGACAAGTTTTTTTTACTTATTTTGTTCTTTTTTTTTGGTAGAAAGTTATTAAGAAATGTTACCAGTTTCTAAAAAAGTACACTCATTTTGAGCGCTGCTTGTCTAGTTGTTGTATTTAGTATTTACCTTACTGGTTTGATTCTTGTTGCTTCATTCATGTAGGCTGATGACACTTCTCTTTTTTTTTTTTTTTTTGCATAAATGGTGAATTCCACATTTTAGAGTAGTGTAGTATTTGTCTGTCTGAGTATGATTTCCGTGTGATTAACCACGTCTGAATAGGGTGAAATGTATACAAAAGGAAGGTGTAGTCTTTTGTCGATGGGTTTTAAATGAACCCAAACCCATAACTTCTGGCGTGGAGTACAGTATATATCTGATTCCATAATTTTAACAGTACAATGAGTTTAATGCTGAGAATCTTAAAAGTTGAACCCATTAAATTTAATTGCTGGGTGTCCACAAACTTACAAAGGCTTAATCCCAAACTAATTGGTTTGTACAATATAGTACAAAGGCTTAATATAGTGCAACCCAATTAGTTTGGGATTGAGAAGCTGTTGATTTACGTATTGATCTTATTTCTGCATGAGATGTGTAGATGGAAGGATCTTTTTCTCACTAAAAGGAAAAGGTGTAGATTAGAAGGCACTAGTCAAAGTTGATTGTTGTCCTCCAACATTTTTAATCTGTTAGGTCAGAAGTGAATTAATAATTGAATTTTTTGATGCAGTTCCGTAGGGGCATCATCTCCAGCAGTTCCAACAAATGCTGGGGGCACAGATTGGTTTGCACAAGCACAGGGTTCAAAAGCAGCTTCACTTTCCCGTATTGGTTCACAGCCCATGTGGACTTCAGTTAGCAATAGTGCTGGTGGTTCTGCACTAGGATCATCACAACCTTCATGTAGACCATGGGAAAGGGGTGATCTATTGAGGCGTCTGTCCACTTTCCAACCCACAAACTGGTTTGGGAAGCCAAAGGTCTGGCTGAAAGATTCCTTTTGCATCATTTCTTAAGATAATTGCATGATCTGTTGAATCCCGCTTTTCCTAACCACAGAACTCCCAAAACCAATACCTGTATGTTTCCATTTCTTGGCCTGTTTTTCTTGTATGCTTATTGGGAGCTTGTTGCGGAAATTGCATGACATAGATAAGAGATACATTTTATGTTAGTTTGTCCCAGGTTTAGGATGTGGTCAGGAGCACAAGGATGTTTACGTGATAGGGTTTCAATAATTATGTTTAAGATTGTTTTTCTTTCTTATCAATTCATAAATTGTCCATCATGGTGAAGTACATACTTTGCACAACTTCTACACTGCAATTGTTGACGCAGGCTTCAAGCTCACTGGCTTGTGCTAGAAGAGGCTGGGTGAATGTGGATGC</genome_strand>
        <mrna_strand>TATAGCTCTCAACACCATCACCGAAAGAGAGAAAACCCACACCATTATACACGCATTTTCACACAGTAGAAGGTGAAAAATCATGAAGGAAGAAGCTATAAGCTCTTCCCATGATCCTCAATTGCCGCCCAAATCATCGTCTCCTCCCCCTATCCCTACACCTGCTGCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAGGGGCATCATCTCCAGCAGTTCCAACAAATGCTGGGGGCACAGATTGGTTTGCACAAGCACAGGGTTCAAAAGCAGCTTCACTTTCCCGTATTGGTTCACAGCCCATGTGGACTTCAGTTAGCAATAGTGCTGGTGGTTCTGCACTAGGATCATCACAACCTTCATGTAGACCATGGGAAAGGGGTGATCTATTGAGGCGTCTGTCCACTTTCCAACCCACAAACTGGTTTGGGAAGCCAAAG......................................................................................................................................................................................................................................................................................................................................................................GCTTCAAGCTCACTGGCTTGTGCTAGAAGAGGCTGGGTGAATGTGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249201" ref_strand="+" ref_description="SGN-E249201 [cLEF-50-G10]">
      <seq>cttgatgaggctgcaacaaatgatgtgggaaggtctttgtcaaatataggagtagatgtgaatctcacaatggctggtggattatcctcttcacaggtgaacatggatgcaaagcctgaacaattcgaagatggacataaacgaagatatccagttactgggcagccttcaagcagtgaagttggtggtcaagcagcttcatatgaatctcgaggccctagttcccgcaaacgaaacttagaggaaggtggaagcacggttgacaggccacaattgcctctacaaccggctgatagtgttgaaggcactgtgatagaccgtgacggagatgaagtaaatgatggtagtcagtactcagctggcccatcaaagcgcccatgtcagtctgatgccttcgggacccaccatacttcatatggcaaggattcatcaggtgctggtcctagcctgtcacttggttttgagattggtacaagtgctcccagagatgatacctttggccgaagacacgaacagctaactggtgtgccctctactcgagactcaacacatgtttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="88310" stop="89468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88610" g_stop="89168" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E249201" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88610" e_stop="89168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATGAGGCTGCAACAAATGATGTGGGAAGGTCTTTGTCAAATATAGGAGTAGATCTGAATCTCACAATGGCTGGTGGATTATCCTCTTCACAGGTGAACATGGATGCAAAGCCTGAACAATTCGAAGATGGACATAAACGAAGATATCCAGTTACTGGGCAGCCTTCAAGCAGTGAAGTTGGTGGTCAAGCAGCTTCATATGAATCTCGAGGCCCTAGTTCCCGCAAACGAAACTTAGAGGAAGGTGGAAGCACGGTTGACAGGCCACAATTGCCTCTACAACCGGCTGATAGTGTTGAAGGCACTGTGATAGACCGTGACGGAGATGAAGTAAATGATGGTAGTCAGTACTCAGCTGGCCCATCAAAGCGCCCATGTCAGTCTGATGCCTTCGGGACCCACCATACTTCATATGGCAAGGATTCATCAGGTGCTGGTCCTAGCCTGTCACTTGGTTTTGAGATTGGTACAAGTGCTCCCAGAGATGATACCTTTGGCCGAAGACACGAACAGCTAACTGGTGTGCCCTCTACTCGAGACTCAACACATGTTTCAT</genome_strand>
        <mrna_strand>CTTGATGAGGCTGCAACAAATGATGTGGGAAGGTCTTTGTCAAATATAGGAGTAGATGTGAATCTCACAATGGCTGGTGGATTATCCTCTTCACAGGTGAACATGGATGCAAAGCCTGAACAATTCGAAGATGGACATAAACGAAGATATCCAGTTACTGGGCAGCCTTCAAGCAGTGAAGTTGGTGGTCAAGCAGCTTCATATGAATCTCGAGGCCCTAGTTCCCGCAAACGAAACTTAGAGGAAGGTGGAAGCACGGTTGACAGGCCACAATTGCCTCTACAACCGGCTGATAGTGTTGAAGGCACTGTGATAGACCGTGACGGAGATGAAGTAAATGATGGTAGTCAGTACTCAGCTGGCCCATCAAAGCGCCCATGTCAGTCTGATGCCTTCGGGACCCACCATACTTCATATGGCAAGGATTCATCAGGTGCTGGTCCTAGCCTGTCACTTGGTTTTGAGATTGGTACAAGTGCTCCCAGAGATGATACCTTTGGCCGAAGACACGAACAGCTAACTGGTGTGCCCTCTACTCGAGACTCAACACATGTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240225" ref_strand="+" ref_description="SGN-E240225 [cLED-25-M16]">
      <seq>gaatcttcccggagactttgatgatgttcatttcccttctacatctatgttaagaagtgcagacccagtggaaacttcagaattgaactacagtaaccaagcacaacaaagtacttgtccggctgtggtcaggagtgctggtgaaatgggtgttagtagcacaaatgatgaagaagtcgtgaatgctgatactgccactgccaatgtgagggatggccctagctttggaatcagtggaggaagtattggaatgggtgctagtcatgaagctgaaatccatgggacagatgcttcagtgcatagagcagatagcgttgctggtgaggtagaagcggttgctgaaattactgaaaatcaggggcaaacaggtgaatttgctccagatccaggacttatgggtgactatgtccctgaagaggtggaccgtggagatcctaatggtgatagtcaagatctgacgtctcgttcagtgggaagggctgatagtggctcaaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="88924" stop="90022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89224" g_stop="89722" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E240225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89224" e_stop="89722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTTCCCGGAGACTTTGATGATGTTCATTTCCCTTCTACATCTATGTTAAGAAGTGCAGACCCAGTGGAAACTTCAGAATTGAACTACAGTAACCAAGCACAACAAAGTACTTGTCCGGCTGTGGTCAGGAGTGCTGGTGAAATGGGTGTTAGTAGCACAAATGATGAAGAAGTCGTGAATGCTGATACTGCCACTGCCAATGTGAGGGATGGCCCTAGCTTTGGAATCAGTGGAGGAAGTATTGGAATGGGTGCTAGTCATGAAGCTGAAATCCATGGGACAGATGCTTCAGTGCATAGAGCAGATAGCGTTGCTGGTGAGGTAGAAGCGGTTGCTGAAATTACTGAAAATCAGGGGCAAACAGGTGAATTTGCTCCAGATCCAGGACTTATGGGTGACTATGTCCCTGAAGAGGTGGACCGTGGAGATCCTAATGGTGATAGTCAAGATCTGACGTCTCGTTCAGTGGGAAGGGCTGATAGTGGCTCAAAAGTT</genome_strand>
        <mrna_strand>GAATCTTCCCGGAGACTTTGATGATGTTCATTTCCCTTCTACATCTATGTTAAGAAGTGCAGACCCAGTGGAAACTTCAGAATTGAACTACAGTAACCAAGCACAACAAAGTACTTGTCCGGCTGTGGTCAGGAGTGCTGGTGAAATGGGTGTTAGTAGCACAAATGATGAAGAAGTCGTGAATGCTGATACTGCCACTGCCAATGTGAGGGATGGCCCTAGCTTTGGAATCAGTGGAGGAAGTATTGGAATGGGTGCTAGTCATGAAGCTGAAATCCATGGGACAGATGCTTCAGTGCATAGAGCAGATAGCGTTGCTGGTGAGGTAGAAGCGGTTGCTGAAATTACTGAAAATCAGGGGCAAACAGGTGAATTTGCTCCAGATCCAGGACTTATGGGTGACTATGTCCCTGAAGAGGTGGACCGTGGAGATCCTAATGGTGATAGTCAAGATCTGACGTCTCGTTCAGTGGGAAGGGCTGATAGTGGCTCAAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688138" ref_strand="+" ref_description="SGN-E688138 [T3_tus_85_N02]">
      <seq>atgctttggattctttccagtcacttggacatattccagtccaaactgttgaatctgaatcagctgcatctctgtacaaggatgatcatcgtgcaccaggtaggaagctcttggcgcgccactcttttagcaaacatcatggacacaactgaatgtgaaagtaggcgtgagacttgcaatctgggcttgaaccatcaatgtcgaagtaccccaatggtcaactttgcagtctagttatatatgcggagttgtgaaggatattctagctatattctggattttcgtggattcccttgcttttcttagttcgaactattaataatgcctcaaatgaagaggctgatttagttgaggatacttttctgtttaatgatttagtaggtttggctttcagacatcctgaaatttgagactatgaagttgaacgagtaattctgtaaaacttataaatgctcaagcaatatttatatgaagcatttgtccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="90290" stop="92401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90590" g_stop="90669" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90670" i_stop="91180" i_length="511">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91181" g_stop="91283" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="183" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91284" i_stop="91723" i_length="440">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91724" g_stop="91770" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="230" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91771" i_stop="91847" i_length="77">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91848" g_stop="92101" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="484" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="495"/>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E688138" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90590" e_stop="90669"/>
          <exon e_start="91181" e_stop="91283"/>
          <exon e_start="91724" e_stop="91770"/>
          <exon e_start="91848" e_stop="92101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTTGGATTCTTTCCAGTCACTTGGACATATTCCAGTCCAAACTGTTGAATCTGAATCAGCTGCATCTCTGTACAAGGTAGTTGATTTTACATATGGTATTCCCAGCAATGACAATTCTTTTTGTAGGCTTTGTGAAGGAGAAGTAATTTTCTTTTGTTGTTTCTAATATGACCGGGGTTTAAAATTCTATAGTTAATTCGCTAGGTATCTTAACTTGATGTATGAACTTGATTGTTAACAGATGAAAAAAGGAAATGCATGTTTGTGGTATCATGTGCTGTTACTTGAAACTTTCTCCTGCCAAGTGATTGCTTTCACAAATAACAAGTTCTCTGGAAATTGTTTTCGCTAGACTCAAATCTTGTTTCTTTTTATCTGTATCTAGATTAAAATCTTGTTTGTTTTCTTGGAAGGATGTGGAAAAATCTCTTCCCATAGTCCTCTCAGACCATGGAATTTGTTGTCTCTTTGAATAACCACCCCTTTCAATTTTATAGCTCCAGGGGAATTCATTTTTTTTTTGGCCCGTTGTTTTTCAATCCATTCGTTGATTTCTGAGGCCAAGTATCTGATACAAAATTTCGCAGGATGATCATCGTGCACCAGGTAGGAAGCTCTTGGCGCGCCACTCTTTTAGCAAACATCATGGACACAACTGAATGTGAAAGTAGGCGTGAGACTTGCAATCTGGTATATTATGTTACTTGCGTTCTTCTTATGACATTTTGAGATCCTCTACTGTTCTACTGCATCATTTAATGGATATAGCTTACTACATTAATCACTACCACCAGTAGCAATGTCTATTGAATTGGCCGTACACACAATATGCTGCCATAAACTGAGTTCAATCTGGTAGCCTGGTCGTAGATTCTACCATGGTGCCCGTCTCTCTTGGCCTATAGAGTCCTCTAGAGTTCATTGGTCTAAAGAAAAGGTATCCCCAATAATGAGAGAATCAATTGATGTAGTATACCTGAGTAAAGACTATCTATTTTTTTGTTGCTGGAGGCACTTAAGTGATTTTATGACTGACACATCAATCTTATACCAATTAGATAGTGTTTGAGAAGGGGCGTTGCTTCATGTTATTTGTTCTATATTTGACTATTTTATCCTTCTTTTATCAGGGCTTGAACCAGCAATGTCGAAGTACCCCAATGGTCAACTTTGCAGTGTATGTCAATATACATCAAACTGTTTTCTTTCATAATGACTCATTGTTGTCTCACTAAAGATGAAATACTGTTACAGCTAGTTATATATGCGGAGTTGTGAAGGATATTCTAGCTATATTCTGGATTTTCGTGGATTCCCTTGCTTTTCTTAGTTCGAACTATTAATAATGCCTCAAATGAAGAGGCTGATTTAGTTGAGGATACTTTTCTGTTTAATGATTTAGTAGGTTTGGCTTTCAGACATCCTGAAATTTGAGACTATGAAGTTGAGCGAGTAATTCTGTAAAACTTATAAATGCTCAAGCAATATTTATATGAAGCATTTGTCCA</genome_strand>
        <mrna_strand>ATGCTTTGGATTCTTTCCAGTCACTTGGACATATTCCAGTCCAAACTGTTGAATCTGAATCAGCTGCATCTCTGTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCATCGTGCACCAGGTAGGAAGCTCTTGGCGCGCCACTCTTTTAGCAAACATCATGGACACAACTGAATGTGAAAGTAGGCGTGAGACTTGCAATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGAACCATCAATGTCGAAGTACCCCAATGGTCAACTTTGCAGT.............................................................................CTAGTTATATATGCGGAGTTGTGAAGGATATTCTAGCTATATTCTGGATTTTCGTGGATTCCCTTGCTTTTCTTAGTTCGAACTATTAATAATGCCTCAAATGAAGAGGCTGATTTAGTTGAGGATACTTTTCTGTTTAATGATTTAGTAGGTTTGGCTTTCAGACATCCTGAAATTTGAGACTATGAAGTTGAACGAGTAATTCTGTAAAACTTATAAATGCTCAAGCAATATTTATATGAAGCATTTGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335774" ref_strand="+" ref_description="SGN-E335774 [cTOE-6-A3]">
      <seq>tgctttggattctttccagtcacttggacatattccagtccaaactgttgaatctgaatcagctgcatctctgtacaaggatgatcatcgtgcaccaggtaggaagctcttggcgcgccactcttttagcaaacatcatggacacaactgaatgtgaaagtaggcgtgagacttgcaatctgggcttgaaccagcaatgtcgaagtaccccaatggtcaactttgcagtctagttatatatgcggagttgtgaaggatattctagctatattctggattttcgtggattcccttgcttttcttagttcgaactattaataatgcctcaaatgaagaggctgatttagttgaggatacttttctgtttaatgatttagtacgtttggctttcagacatcctgaaatttgagactatgaagttgagcgagtaattctgtaaaacttataaatgctcaagcaatatttatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="90291" stop="92387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90591" g_stop="90669" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90670" i_stop="91180" i_length="511">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91181" g_stop="91283" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="182" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91284" i_stop="91723" i_length="440">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91724" g_stop="91770" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="229" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91771" i_stop="91847" i_length="77">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91848" g_stop="92087" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="469" r_length="240" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E335774" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90591" e_stop="90669"/>
          <exon e_start="91181" e_stop="91283"/>
          <exon e_start="91724" e_stop="91770"/>
          <exon e_start="91848" e_stop="92087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGGATTCTTTCCAGTCACTTGGACATATTCCAGTCCAAACTGTTGAATCTGAATCAGCTGCATCTCTGTACAAGGTAGTTGATTTTACATATGGTATTCCCAGCAATGACAATTCTTTTTGTAGGCTTTGTGAAGGAGAAGTAATTTTCTTTTGTTGTTTCTAATATGACCGGGGTTTAAAATTCTATAGTTAATTCGCTAGGTATCTTAACTTGATGTATGAACTTGATTGTTAACAGATGAAAAAAGGAAATGCATGTTTGTGGTATCATGTGCTGTTACTTGAAACTTTCTCCTGCCAAGTGATTGCTTTCACAAATAACAAGTTCTCTGGAAATTGTTTTCGCTAGACTCAAATCTTGTTTCTTTTTATCTGTATCTAGATTAAAATCTTGTTTGTTTTCTTGGAAGGATGTGGAAAAATCTCTTCCCATAGTCCTCTCAGACCATGGAATTTGTTGTCTCTTTGAATAACCACCCCTTTCAATTTTATAGCTCCAGGGGAATTCATTTTTTTTTTGGCCCGTTGTTTTTCAATCCATTCGTTGATTTCTGAGGCCAAGTATCTGATACAAAATTTCGCAGGATGATCATCGTGCACCAGGTAGGAAGCTCTTGGCGCGCCACTCTTTTAGCAAACATCATGGACACAACTGAATGTGAAAGTAGGCGTGAGACTTGCAATCTGGTATATTATGTTACTTGCGTTCTTCTTATGACATTTTGAGATCCTCTACTGTTCTACTGCATCATTTAATGGATATAGCTTACTACATTAATCACTACCACCAGTAGCAATGTCTATTGAATTGGCCGTACACACAATATGCTGCCATAAACTGAGTTCAATCTGGTAGCCTGGTCGTAGATTCTACCATGGTGCCCGTCTCTCTTGGCCTATAGAGTCCTCTAGAGTTCATTGGTCTAAAGAAAAGGTATCCCCAATAATGAGAGAATCAATTGATGTAGTATACCTGAGTAAAGACTATCTATTTTTTTGTTGCTGGAGGCACTTAAGTGATTTTATGACTGACACATCAATCTTATACCAATTAGATAGTGTTTGAGAAGGGGCGTTGCTTCATGTTATTTGTTCTATATTTGACTATTTTATCCTTCTTTTATCAGGGCTTGAACCAGCAATGTCGAAGTACCCCAATGGTCAACTTTGCAGTGTATGTCAATATACATCAAACTGTTTTCTTTCATAATGACTCATTGTTGTCTCACTAAAGATGAAATACTGTTACAGCTAGTTATATATGCGGAGTTGTGAAGGATATTCTAGCTATATTCTGGATTTTCGTGGATTCCCTTGCTTTTCTTAGTTCGAACTATTAATAATGCCTCAAATGAAGAGGCTGATTTAGTTGAGGATACTTTTCTGTTTAATGATTTAGTAGGTTTGGCTTTCAGACATCCTGAAATTTGAGACTATGAAGTTGAGCGAGTAATTCTGTAAAACTTATAAATGCTCAAGCAATATTTATAT</genome_strand>
        <mrna_strand>TGCTTTGGATTCTTTCCAGTCACTTGGACATATTCCAGTCCAAACTGTTGAATCTGAATCAGCTGCATCTCTGTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCATCGTGCACCAGGTAGGAAGCTCTTGGCGCGCCACTCTTTTAGCAAACATCATGGACACAACTGAATGTGAAAGTAGGCGTGAGACTTGCAATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGAACCAGCAATGTCGAAGTACCCCAATGGTCAACTTTGCAGT.............................................................................CTAGTTATATATGCGGAGTTGTGAAGGATATTCTAGCTATATTCTGGATTTTCGTGGATTCCCTTGCTTTTCTTAGTTCGAACTATTAATAATGCCTCAAATGAAGAGGCTGATTTAGTTGAGGATACTTTTCTGTTTAATGATTTAGTACGTTTGGCTTTCAGACATCCTGAAATTTGAGACTATGAAGTTGAGCGAGTAATTCTGTAAAACTTATAAATGCTCAAGCAATATTTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229996" ref_strand="+" ref_description="SGN-E229996 [cLEL-33-A4](-)">
      <seq>tgtaaagtaggcgtgagacttgcaatctgggcttgaaccagcaatgtcgaagtaccccaatggtcaactttgcagtgtatgtcaatatacatcaaactgttttctttcataatgactcattgttgtctcactaaagatgaaatactgttacagctagttatatatgcggagttgtgaaggatattctagctatattctggattttcgtggattcccttgcttttcttagttcgaactattaataatgcctcaaatgaagaggctgatttagttgaggatacttttctgtttaatgatttagtaggtttggctttcagacatcctgaaatttgagactatgaagttgagcgagtaattctgtaaaacttataaatgctcaagcaatatttatatgaagcatttgtccagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="90955" stop="99454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91254" g_stop="91283" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91284" i_stop="91723" i_length="440">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91724" g_stop="92101" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="407" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92102" i_stop="93075" i_length="974">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93076" g_stop="93097" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="429" r_length="22" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E229996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91254" e_stop="91283"/>
          <exon e_start="91724" e_stop="92101"/>
          <exon e_start="93076" e_stop="93097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAAGTAGGCGTGAGACTTGCAATCTGGTATATTATGTTACTTGCGTTCTTCTTATGACATTTTGAGATCCTCTACTGTTCTACTGCATCATTTAATGGATATAGCTTACTACATTAATCACTACCACCAGTAGCAATGTCTATTGAATTGGCCGTACACACAATATGCTGCCATAAACTGAGTTCAATCTGGTAGCCTGGTCGTAGATTCTACCATGGTGCCCGTCTCTCTTGGCCTATAGAGTCCTCTAGAGTTCATTGGTCTAAAGAAAAGGTATCCCCAATAATGAGAGAATCAATTGATGTAGTATACCTGAGTAAAGACTATCTATTTTTTTGTTGCTGGAGGCACTTAAGTGATTTTATGACTGACACATCAATCTTATACCAATTAGATAGTGTTTGAGAAGGGGCGTTGCTTCATGTTATTTGTTCTATATTTGACTATTTTATCCTTCTTTTATCAGGGCTTGAACCAGCAATGTCGAAGTACCCCAATGGTCAACTTTGCAGTGTATGTCAATATACATCAAACTGTTTTCTTTCATAATGACTCATTGTTGTCTCACTAAAGATGAAATACTGTTACAGCTAGTTATATATGCGGAGTTGTGAAGGATATTCTAGCTATATTCTGGATTTTCGTGGATTCCCTTGCTTTTCTTAGTTCGAACTATTAATAATGCCTCAAATGAAGAGGCTGATTTAGTTGAGGATACTTTTCTGTTTAATGATTTAGTAGGTTTGGCTTTCAGACATCCTGAAATTTGAGACTATGAAGTTGAGCGAGTAATTCTGTAAAACTTATAAATGCTCAAGCAATATTTATATGAAGCATTTGTCCAGCTTAGACTCTCCTTAAAACTTGATTAATTTCTAAACTTGCCGTATTTAGACATGGCCATCCTTATGCTGTTAGTGATATTTTTTTGAGATGCAGTTGGATAGCATACTTGGTCCTTGATATGAGGATTTACAAGTATTTTCTTGATTGATTTCGAGTCTTTGCATCAGAGGATCTGCTCTTTGGTGTGGGATTTCGATCTCATCTTTACAGAACTTAAAGATTTCCTTTGTCCCAATTGGTTTGGCAATTTCATTTATTGAGGGTAAATATAACACATTCCTAAAGCTAAATCAAAAATTATTTTCATGTGTTAGTGTCCACGCTTTAAATCATCTGAGCTTACTTTCATGTGTTGAAGTCCACTCTTAAAATCTTCTAAGCTTATTTTCATGTGTTAATCCATTCGACTTGATTAGGAACAATTACAACATATCTTGAGAGGGAATTTGATATGTTTAGTTTGCGTGGATCTCTACTAATTCGTATATTAGGATTTGAATAAATAGAAAAATCACTTATTATTTTTAACCTTTAAAATAGTATTTGAACTGGAAATCTCGTATGTTCTCAACCTACTTTATTGAACTCCAAACCACACTATTGGGTAAATAGAAGTTGGTCTCATGAATTTGTTTGTAGTATATATTTTGAGAACTTTCATCCACTCTCGGGGGCTCAAATTTGAGACCTTTGAAGAAAAAAATAGAGTAACTTAATATTTCAAGACCTTTGATGGAACAATAGAGTGACCTAAATTCTGTGCTGGTAGAGAGTGATAGATATTAAACGGAGTGGATGTTTTAAAAAGCTGGCTCGAACATTACCATCATTCACCTTTCATCGTTTCCCTTGTTTACCCAGTCACCAACAACAAGGACAAATTTACAAGAAAACTTGTGGGACCAAAGAATGATTTGAAGGTCACAAATTTACCAGATATGATATTTCAAGACAAAACAACATCCTTTTCACGAAGAAAAAAAGAAGAGAAAAA</genome_strand>
        <mrna_strand>TGT-AAAGTAGGCGTGAGACTTGCAATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGAACCAGCAATGTCGAAGTACCCCAATGGTCAACTTTGCAGTGTATGTCAATATACATCAAACTGTTTTCTTTCATAATGACTCATTGTTGTCTCACTAAAGATGAAATACTGTTACAGCTAGTTATATATGCGGAGTTGTGAAGGATATTCTAGCTATATTCTGGATTTTCGTGGATTCCCTTGCTTTTCTTAGTTCGAACTATTAATAATGCCTCAAATGAAGAGGCTGATTTAGTTGAGGATACTTTTCTGTTTAATGATTTAGTAGGTTTGGCTTTCAGACATCCTGAAATTTGAGACTATGAAGTTGAGCGAGTAATTCTGTAAAACTTATAAATGCTCAAGCAATATTTATATGAAGCATTTGTCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230072" ref_strand="-" ref_description="SGN-E230072 [cLEL-33-A4](-)">
      <seq>tttttttttttttttttttttttctggacaaatgcttcatataaatattgcttgagcatttataagttttacagaattactcgctcaacttcatagtctcaaatttcaggatgtctgaaagccaaacctactaaatcattaaacagaaaagtatcctcaactaaatcagcctcttcatttgaggcattattaatagttcgaactaagaaaagcaagggaatccacgaaaatccagaatatagctagaatatccttcacaactccgcatatataactagcttgaacagtatttcatctttagtgagacaacaatgagtcattatgaaagaaaacagtttgatgtatattgacataacactgcaaagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="99454" stop="91458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93098" g_stop="93076" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.739"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93075" i_stop="92103" i_length="973">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92102" g_stop="91758" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="369" r_length="346" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E230072" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230072" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93098" e_stop="93076"/>
          <exon e_start="92102" e_stop="91758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTCTTCTTTTTTTCTTCGTGAAAAGGATGTTGTTTTGTCTTGAAATATCATATCTGGTAAATTTGTGACCTTCAAATCATTCTTTGGTCCCACAAGTTTTCTTGTAAATTTGTCCTTGTTGTTGGTGACTGGGTAAACAAGGGAAACGATGAAAGGTGAATGATGGTAATGTTCGAGCCAGCTTTTTAAAACATCCACTCCGTTTAATATCTATCACTCTCTACCAGCACAGAATTTAGGTCACTCTATTGTTCCATCAAAGGTCTTGAAATATTAAGTTACTCTATTTTTTTCTTCAAAGGTCTCAAATTTGAGCCCCCGAGAGTGGATGAAAGTTCTCAAAATATATACTACAAACAAATTCATGAGACCAACTTCTATTTACCCAATAGTGTGGTTTGGAGTTCAATAAAGTAGGTTGAGAACATACGAGATTTCCAGTTCAAATACTATTTTAAAGGTTAAAAATAATAAGTGATTTTTCTATTTATTCAAATCCTAATATACGAATTAGTAGAGATCCACGCAAACTAAACATATCAAATTCCCTCTCAAGATATGTTGTAATTGTTCCTAATCAAGTCGAATGGATTAACACATGAAAATAAGCTTAGAAGATTTTAAGAGTGGACTTCAACACATGAAAGTAAGCTCAGATGATTTAAAGCGTGGACACTAACACATGAAAATAATTTTTGATTTAGCTTTAGGAATGTGTTATATTTACCCTCAATAAATGAAATTGCCAAACCAATTGGGACAAAGGAAATCTTTAAGTTCTGTAAAGATGAGATCGAAATCCCACACCAAAGAGCAGATCCTCTGATGCAAAGACTCGAAATCAATCAAGAAAATACTTGTAAATCCTCATATCAAGGACCAAGTATGCTATCCAACTGCATCTCAAAAAAATATCACTAACAGCATAAGGATGGCCATGTCTAAATACGGCAAGTTTAGAAATTAATCAAGTTTTAAGGAGAGTCTAAGCTGGACAAATGCTTCATATAAATATTGCTTGAGCATTTATAAGTTTTACAGAATTACTCGCTCAACTTCATAGTCTCAAATTTCAGGATGTCTGAAAGCCAAACCTACTAAATCATTAAACAGAAAAGTATCCTCAACTAAATCAGCCTCTTCATTTGAGGCATTATTAATAGTTCGAACTAAGAAAAGCAAGGGAATCCACGAAAATCCAGAATATAGCTAGAATATCCTTCACAACTCCGCATATATAACTAGCTGTAACAGTATTTCATCTTTAGTGAGACAACAATGAGTCATTATGAAAGAAAACAGTTTGATGTATATTGACAT-ACACTGCAAAGTTGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAAATGCTTCATATAAATATTGCTTGAGCATTTATAAGTTTTACAGAATTACTCGCTCAACTTCATAGTCTCAAATTTCAGGATGTCTGAAAGCCAAACCTACTAAATCATTAAACAGAAAAGTATCCTCAACTAAATCAGCCTCTTCATTTGAGGCATTATTAATAGTTCGAACTAAGAAAAGCAAGGGAATCCACGAAAATCCAGAATATAGCTAGAATATCCTTCACAACTCCGCATATATAACTAGCTTGAACAGTATTTCATCTTTAGTGAGACAACAATGAGTCATTATGAAAGAAAACAGTTTGATGTATATTGACATAACACTGCAAAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691495" ref_strand="-" ref_description="SGN-E691495 [LH_Ea06E05]">
      <seq>tttttttttttttttttttngaagaacacaaaatttaccagatatgatatttcatgacaaacaacatccttttcatgaagaaaaaagaaaagaaaaagtaaagcaacatccttgattgtacctaattatctaatttattagcattagccgtgtacatgatatagtaaaaccaacaccaacaaccaaaactaaagagggatcagtttcaaaatctcaatagttagcaatctcaattccccctttgttgttgtacgatccaactggtgcatcatacttgctaaaaagccgataagacgaaagcaacgaaagccctgcataacaaaggcttactataaaagtaatggacacagatgctgtagctttgtggcaaaaacctcgaaatgaaccacatgattcactccatgaaaatggtggatctcctttatatgctaaatacatcacctccattacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="35588" stop="93748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92342" g_stop="92365" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.542"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92366" i_stop="93023" i_length="658">
            <donor d_prob="0.913" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93024" g_stop="93453" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="452" r_length="428" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E691495" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691495" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92342" e_stop="92365"/>
          <exon e_start="93024" e_stop="93453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGCAATTTCATTTATTGAGGGTAAATATAACACATTCCTAAAGCTAAATCAAAAATTATTTTCATGTGTTAGTGTCCACGCTTTAAATCATCTGAGCTTACTTTCATGTGTTGAAGTCCACTCTTAAAATCTTCTAAGCTTATTTTCATGTGTTAATCCATTCGACTTGATTAGGAACAATTACAACATATCTTGAGAGGGAATTTGATATGTTTAGTTTGCGTGGATCTCTACTAATTCGTATATTAGGATTTGAATAAATAGAAAAATCACTTATTATTTTTAACCTTTAAAATAGTATTTGAACTGGAAATCTCGTATGTTCTCAACCTACTTTATTGAACTCCAAACCACACTATTGGGTAAATAGAAGTTGGTCTCATGAATTTGTTTGTAGTATATATTTTGAGAACTTTCATCCACTCTCGGGGGCTCAAATTTGAGACCTTTGAAGAAAAAAATAGAGTAACTTAATATTTCAAGACCTTTGATGGAACAATAGAGTGACCTAAATTCTGTGCTGGTAGAGAGTGATAGATATTAAACGGAGTGGATGTTTTAAAAAGCTGGCTCGAACATTACCATCATTCACCTTTCATCGTTTCCCTTGTTTACCCAGTCACCAACAACAAGGACAAATTTACAAGAAAACTTGTGGGACCAAAGAATGATTTGAAGGTCAC-AAATTTACCAGATATGATATTTCAAGACAAAACAACATCCTTTTCACGAAGAAAAAAAGAAGAGAAAAAGTAAAGCAACATCCTTGATTGTACCTAATTATCTAATTTATTAGCATTAGCCGTGTACATGATATAGTAAAAACCAACACCAACAACCAAAACTAAAGAGGGATCAGTTTCAAAATCTCAATAGTTAGCAATCTCAATTCCCCCTTTGTTGTTGTACGATCCAACTGGTGCATCATACTTGCTAAAAAGCCGATAAGACGAAAGCAACGAAAGCCCTGCATAACAAAGGCTTACTATGAAAGTAATGGACACAGATGCTGTAGCTTTGTGGCAAAAACCTCGAAATGAACCACATGATTCACTCCATGAAACTTCTGGATCTCCTTTATATGCTAAATACATCACCTCCGTCGATA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTNGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAAAATTTACCAGATATGATATTTCATGACAA-ACAACATCCTTTTCATGAAGAAA-AAAGAAAAGAAAAAGTAAAGCAACATCCTTGATTGTACCTAATTATCTAATTTATTAGCATTAGCCGTGTACATGATATAGT-AAAACCAACACCAACAACCAAAACTAAAGAGGGATCAGTTTCAAAATCTCAATAGTTAGCAATCTCAATTCCCCCTTTGTTGTTGTACGATCCAACTGGTGCATCATACTTGCTAAAAAGCCGATAAGACGAAAGCAACGAAAGCCCTGCATAACAAAGGCTTACTATAAAAGTAATGGACACAGATGCTGTAGCTTTGTGGCAAAAACCTCGAAATGAACCACATGATTCACTCCATGAAAATGGTGGATCTCCTTTATATGCTAAATACATCACCTCCATTACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221452" ref_strand="-" ref_description="SGN-E221452 [cLEL-10-I5](-)">
      <seq>ttttttttttttttttttatggtcacaaatttaccagatatgatattgtcaagacaaaacaacatccttttcacgaagaaaaaaagaagagaaaaagtaaagcaacatccttgattgtacctaattatctaatttattagcattagccgtgtacatgatatagtaaaaaccaacaccaacaaccaaaactaaagagggatcagtttcaaaatctcaatagttagcaatctcaattccccctttgttgttgtacgatccaactggtgcatcatacttgctaaaaagccgataagacgaaagcaacgaaagccctgcataacaaaggcttactatgaaagtaatggacacagatgctgtagctttgtggcaaaaacctcgaaatgaaccacatgattcactccatgaaacttctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="35590" stop="93718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92345" g_stop="92365" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.524"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92366" i_stop="93023" i_length="658">
            <donor d_prob="0.913" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93024" g_stop="93418" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="417" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E221452" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221452" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92345" e_stop="92365"/>
          <exon e_start="93024" e_stop="93418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAATTTCATTTATTGAGGGTAAATATAACACATTCCTAAAGCTAAATCAAAAATTATTTTCATGTGTTAGTGTCCACGCTTTAAATCATCTGAGCTTACTTTCATGTGTTGAAGTCCACTCTTAAAATCTTCTAAGCTTATTTTCATGTGTTAATCCATTCGACTTGATTAGGAACAATTACAACATATCTTGAGAGGGAATTTGATATGTTTAGTTTGCGTGGATCTCTACTAATTCGTATATTAGGATTTGAATAAATAGAAAAATCACTTATTATTTTTAACCTTTAAAATAGTATTTGAACTGGAAATCTCGTATGTTCTCAACCTACTTTATTGAACTCCAAACCACACTATTGGGTAAATAGAAGTTGGTCTCATGAATTTGTTTGTAGTATATATTTTGAGAACTTTCATCCACTCTCGGGGGCTCAAATTTGAGACCTTTGAAGAAAAAAATAGAGTAACTTAATATTTCAAGACCTTTGATGGAACAATAGAGTGACCTAAATTCTGTGCTGGTAGAGAGTGATAGATATTAAACGGAGTGGATGTTTTAAAAAGCTGGCTCGAACATTACCATCATTCACCTTTCATCGTTTCCCTTGTTTACCCAGTCACCAACAACAAGGACAAATTTACAAGAAAACTTGTGGGACCAAAGAATGATTTGAAGGTCACAAATTTACCAGATATGATATT-TCAAGACAAAACAACATCCTTTTCACGAAGAAAAAAAGAAGAGAAAAAGTAAAGCAACATCCTTGATTGTACCTAATTATCTAATTTATTAGCATTAGCCGTGTACATGATATAGTAAAAACCAACACCAACAACCAAAACTAAAGAGGGATCAGTTTCAAAATCTCAATAGTTAGCAATCTCAATTCCCCCTTTGTTGTTGTACGATCCAACTGGTGCATCATACTTGCTAAAAAGCCGATAAGACGAAAGCAACGAAAGCCCTGCATAACAAAGGCTTACTATGAAAGTAATGGACACAGATGCTGTAGCTTTGTGGCAAAAACCTCGAAATGAACCACATGATTCACTCCATGAAACTTCTGGATC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACAAATTTACCAGATATGATATTGTCAAGACAAAACAACATCCTTTTCACGAAGAAAAAAAGAAGAGAAAAAGTAAAGCAACATCCTTGATTGTACCTAATTATCTAATTTATTAGCATTAGCCGTGTACATGATATAGTAAAAACCAACACCAACAACCAAAACTAAAGAGGGATCAGTTTCAAAATCTCAATAGTTAGCAATCTCAATTCCCCCTTTGTTGTTGTACGATCCAACTGGTGCATCATACTTGCTAAAAAGCCGATAAGACGAAAGCAACGAAAGCCCTGCATAACAAAGGCTTACTATGAAAGTAATGGACACAGATGCTGTAGCTTTGTGGCAAAAACCTCGAAATGAACCACATGATTCACTCCATGAAACTTCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695335" ref_strand="-" ref_description="SGN-E695335 [LH_Ea06E05](-)">
      <seq>ttttttttttttttttttgaagaacacaaaatttaccagccattatatttcatgacaaacaacatccttttcatgaagaacctttaaaagaaaaagtaaagcaacatccttgattggacctaattatctaatttattagcattagccgggtacatgatatagtaaaaccaacaccaacaaccaaaactaaagagggatcagtttcaaaatctcaatagttagcaatctcaattccccctttgttgttgtacgatccaactggggcatcatacttgctaaaaagccgataagacgaaagcaacgaaagccctgcataacaaaggcttactataaaagtaatggacacagatgctgtagctttgtggcaaaaacctcgaaatgaaccacatgattcactccatgaaacttctggatctcctttatatgctaaatacatcacctccatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="84401" stop="93750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92351" g_stop="92365" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.533"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92366" i_stop="93016" i_length="651">
            <donor d_prob="0.913" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93017" g_stop="93450" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="447" r_length="432" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E695335" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695335" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92351" e_stop="92365"/>
          <exon e_start="93017" e_stop="93450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTATTGAGGGTAAATATAACACATTCCTAAAGCTAAATCAAAAATTATTTTCATGTGTTAGTGTCCACGCTTTAAATCATCTGAGCTTACTTTCATGTGTTGAAGTCCACTCTTAAAATCTTCTAAGCTTATTTTCATGTGTTAATCCATTCGACTTGATTAGGAACAATTACAACATATCTTGAGAGGGAATTTGATATGTTTAGTTTGCGTGGATCTCTACTAATTCGTATATTAGGATTTGAATAAATAGAAAAATCACTTATTATTTTTAACCTTTAAAATAGTATTTGAACTGGAAATCTCGTATGTTCTCAACCTACTTTATTGAACTCCAAACCACACTATTGGGTAAATAGAAGTTGGTCTCATGAATTTGTTTGTAGTATATATTTTGAGAACTTTCATCCACTCTCGGGGGCTCAAATTTGAGACCTTTGAAGAAAAAAATAGAGTAACTTAATATTTCAAGACCTTTGATGGAACAATAGAGTGACCTAAATTCTGTGCTGGTAGAGAGTGATAGATATTAAACGGAGTGGATGTTTTAAAAAGCTGGCTCGAACATTACCATCATTCACCTTTCATCGTTTCCCTTGTTTACCCAGTCACCAACAACAAGGACAAATTTACAAGAAAACTTGTGGGACCAAAGAATGATTTGAAGGTCAC-AAATTTACCAGATATGATATTTCAAGACAAAACAACATCCTTTTCACGAAGAAAAAAAGAAGAGAAAAAGTAAAGCAACATCCTTGATTGTACCTAATTATCTAATTTATTAGCATTAGCCGTGTACATGATATAGTAAAAACCAACACCAACAACCAAAACTAAAGAGGGATCAGTTTCAAAATCTCAATAGTTAGCAATCTCAATTCCCCCTTTGTTGTTGTACGATCCAACTGGTGCATCATACTTGCTAAAAAGCCGATAAGACGAAAGCAACGAAAGCCCTGCATAACAAAGGCTTACTATGAAAGTAATGGACACAGATGCTGTAGCTTTGTGGCAAAAACCTCGAAATGAACCACATGATTCACTCCATGAAACTTCTGGATCTCCTTTATATGCTAAATACATCACCTCCGTCG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAACACAAAATTTACCAGCCATTATATTTCATGAC-AAACAACATCCTTTTCATGAAG-AACCTTTAAAAGAAAAAGTAAAGCAACATCCTTGATTGGACCTAATTATCTAATTTATTAGCATTAGCCGGGTACATGATATAGT-AAAACCAACACCAACAACCAAAACTAAAGAGGGATCAGTTTCAAAATCTCAATAGTTAGCAATCTCAATTCCCCCTTTGTTGTTGTACGATCCAACTGGGGCATCATACTTGCTAAAAAGCCGATAAGACGAAAGCAACGAAAGCCCTGCATAACAAAGGCTTACTATAAAAGTAATGGACACAGATGCTGTAGCTTTGTGGCAAAAACCTCGAAATGAACCACATGATTCACTCCATGAAACTTCTGGATCTCCTTTATATGCTAAATACATCACCTCCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232506" ref_strand="-" ref_description="SGN-E232506 [cLEL-5-D10](-)">
      <seq>tttttttttttttttttgaaggtcacaaatttaccagatatgatatttcaagacaaaacaacatccttttcacgaagaaaaaaagaagagaaaaagtaaagcaacatccttgattgtacctaattatctaatttattagcattagccgtgtacatgatatagtaaaaaccaacaccaacaaccaaaactaaagagggatcagtttcaaaatctcaatagttagcaatctcaattccccctttgttgttgtacgatccaactggtgcatcatacttgctaaaaagccgataagacgaaagcatcgaaagccctgcataacaaaggcccactatgaaagtaatggacacagatgctgtagctgtgtggcaaaaacctcgaaatgaaccacatgattcactccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="84401" stop="93705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92352" g_stop="92365" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92366" i_stop="93016" i_length="651">
            <donor d_prob="0.913" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93017" g_stop="93405" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="403" r_length="389" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E232506" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232506" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92352" e_stop="92365"/>
          <exon e_start="93017" e_stop="93405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTATTGAGGGTAAATATAACACATTCCTAAAGCTAAATCAAAAATTATTTTCATGTGTTAGTGTCCACGCTTTAAATCATCTGAGCTTACTTTCATGTGTTGAAGTCCACTCTTAAAATCTTCTAAGCTTATTTTCATGTGTTAATCCATTCGACTTGATTAGGAACAATTACAACATATCTTGAGAGGGAATTTGATATGTTTAGTTTGCGTGGATCTCTACTAATTCGTATATTAGGATTTGAATAAATAGAAAAATCACTTATTATTTTTAACCTTTAAAATAGTATTTGAACTGGAAATCTCGTATGTTCTCAACCTACTTTATTGAACTCCAAACCACACTATTGGGTAAATAGAAGTTGGTCTCATGAATTTGTTTGTAGTATATATTTTGAGAACTTTCATCCACTCTCGGGGGCTCAAATTTGAGACCTTTGAAGAAAAAAATAGAGTAACTTAATATTTCAAGACCTTTGATGGAACAATAGAGTGACCTAAATTCTGTGCTGGTAGAGAGTGATAGATATTAAACGGAGTGGATGTTTTAAAAAGCTGGCTCGAACATTACCATCATTCACCTTTCATCGTTTCCCTTGTTTACCCAGTCACCAACAACAAGGACAAATTTACAAGAAAACTTGTGGGACCAAAGAATGATTTGAAGGTCACAAATTTACCAGATATGATATTTCAAGACAAAACAACATCCTTTTCACGAAGAAAAAAAGAAGAGAAAAAGTAAAGCAACATCCTTGATTGTACCTAATTATCTAATTTATTAGCATTAGCCGTGTACATGATATAGTAAAAACCAACACCAACAACCAAAACTAAAGAGGGATCAGTTTCAAAATCTCAATAGTTAGCAATCTCAATTCCCCCTTTGTTGTTGTACGATCCAACTGGTGCATCATACTTGCTAAAAAGCCGATAAGACGAAAGCAACGAAAGCCCTGCATAACAAAGGCTTACTATGAAAGTAATGGACACAGATGCTGTAGCTTTGTGGCAAAAACCTCGAAATGAACCACATGATTCACTCCATG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGGTCACAAATTTACCAGATATGATATTTCAAGACAAAACAACATCCTTTTCACGAAGAAAAAAAGAAGAGAAAAAGTAAAGCAACATCCTTGATTGTACCTAATTATCTAATTTATTAGCATTAGCCGTGTACATGATATAGTAAAAACCAACACCAACAACCAAAACTAAAGAGGGATCAGTTTCAAAATCTCAATAGTTAGCAATCTCAATTCCCCCTTTGTTGTTGTACGATCCAACTGGTGCATCATACTTGCTAAAAAGCCGATAAGACGAAAGCATCGAAAGCCCTGCATAACAAAGGCCCACTATGAAAGTAATGGACACAGATGCTGTAGCTGTGTGGCAAAAACCTCGAAATGAACCACATGATTCACTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232286" ref_strand="+" ref_description="SGN-E232286 [cLEL-5-D10](-)">
      <seq>atcagttattgacatatgcaatactggctgctggagctgtatcgacggaggtgatgtatttagcatataaaggagatccagaagtttcatggagtgaatcatgtggttcatttcgaggtttttgccacaaagctacagcatctgtgtccattactttcatagtaagcctttgttatgcagggctttcgttgctttcgtcttatcggctttttagcaagtatgatgcaccagttggatcgtacatcaacaaagggggaattgagattgctaactattgagattttgaaactgatccctctttagttttggttgttggtgttggtttttactatatcatgtacacggctaatgctaataaattagataattaggtacaatcaaggatgttgctttactttttctcttctttttttcttcgtgaaaaggatgttgttttgtcttgaaatatcatatctggtaaatttgtggccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="93789" stop="84401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93618" g_stop="93614" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93613" i_stop="93488" i_length="126">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93487" g_stop="93017" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="476" r_length="471" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93016" i_stop="92952" i_length="65">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.774" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92951" g_stop="92938" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="490" r_length="14" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E232286" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93618" e_stop="93614"/>
          <exon e_start="93487" e_stop="93017"/>
          <exon e_start="92951" e_stop="92938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGTTCCGCTTTTGTGATATCAATCTATGCATACATTTTGAATCATTTGGTTATATGAATTATATTAGTTCGAGAAAAATGGAATAAGAACTTACAGAACCTGCTCTGCTTTCACTTGTGTTTTGTAGTTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGCATATAAAGGAGATCCAGAAGTTTCATGGAGTGAATCATGTGGTTCATTTCGAGGTTTTTGCCACAAAGCTACAGCATCTGTGTCCATTACTTTCATAGTAAGCCTTTGTTATGCAGGGCTTTCGTTGCTTTCGTCTTATCGGCTTTTTAGCAAGTATGATGCACCAGTTGGATCGTACAACAACAAAGGGGGAATTGAGATTGCTAACTATTGAGATTTTGAAACTGATCCCTCTTTAGTTTTGGTTGTTGGTGTTGGTTTTTACTATATCATGTACACGGCTAATGCTAATAAATTAGATAATTAGGTACAATCAAGGATGTTGCTTTACTTTTTCTCTTCTTTTTTTCTTCGTGAAAAGGATGTTGTTTTGTCTTGAAATATCATATCTGGTAAATTTGTGACCTTCAAATCATTCTTTGGTCCCACAAGTTTTCTTGTAAATTTGTCCTTGTTGTTGGTGACTGGGTAAACAAGGGAAACGATGAAAG</genome_strand>
        <mrna_strand>ATCAG..............................................................................................................................TTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGCATATAAAGGAGATCCAGAAGTTTCATGGAGTGAATCATGTGGTTCATTTCGAGGTTTTTGCCACAAAGCTACAGCATCTGTGTCCATTACTTTCATAGTAAGCCTTTGTTATGCAGGGCTTTCGTTGCTTTCGTCTTATCGGCTTTTTAGCAAGTATGATGCACCAGTTGGATCGTACATCAACAAAGGGGGAATTGAGATTGCTAACTATTGAGATTTTGAAACTGATCCCTCTTTAGTTTTGGTTGTTGGTGTTGGTTTTTACTATATCATGTACACGGCTAATGCTAATAAATTAGATAATTAGGTACAATCAAGGATGTTGCTTTACTTTTTCTCTTCTTTTTTTCTTCGTGAAAAGGATGTTGTTTTGTCTTGAAATATCATATCTGGTAAATTTGTGGCCTTCAAA.................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740267" ref_strand="+" ref_description="SGN-E740267 [LC20DA08]">
      <seq>ctcttacaataaaatcattttttagaaaggaaaaaaaaaaagccaaaaagccaaaagagagtacaatattacataatgaaaactagtagtacaaatatggctggaagtagtccactacaaaagagagaattagaagatgacaatgaaagtagtagcagtatgagaacagctgaaactatgctgcgtttgttacctatggggctttgtgttgtggctcttgttattatgctcaaaaatcaacaaactaatgattatggttccattacttactctgatcttggaacctttaggtatttagtacatgcaaatggaatttgtgcaggttattcacttttatcagcaattgtagcagtcgtacctcgtcccataacgatgtctagagcctggaccttcttcctccttgatcagttattgacatatgcaatactggctgctggagctgtatcgacggaggtgatgtatttagcatataaaggagatccagaagtttcatggagtgaatcatgtggttcatttcgaggtttttgccacaaagctacagcatctgtgtccattactttcatagtaagcctttgttatgcagggctttcgttgctttcgtcttatcggctttttagcaagtatgatgcaccagttggatcgtacaacaacaaagggggaattgagattgctaactattgagattttgaaactgatccctctttagttttggttgttggtgttggtttttactatatcatgtacacggctaatgctaataaattagataattaggtacaatcaaggatgttgctttactttttctcttctttttttcctcgggaaaaggatgttgtttttgtctgaaatatcatatctggtaaatttgtgaccttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="94908" stop="92717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94608" g_stop="94319" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94318" i_stop="93732" i_length="587">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93731" g_stop="93614" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="408" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93613" i_stop="93488" i_length="126">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93487" g_stop="93018" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="878" r_length="470" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="879" polyA_stop="892"/>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E740267" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94608" e_stop="94319"/>
          <exon e_start="93731" e_stop="93614"/>
          <exon e_start="93487" e_stop="93018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTACAATAAAATCATTTTTTAGAAAGGAAAAAAAAAAAGCCAAAAAGCCAAAAGAGAGTACAATATTACATAATGAAAACTAGTAGTACAAATATGGCTGGAAGTAGTCCACTACAAAAGAGAGAATTAGAAGATGACAATGAAAGTAGTAGCAGTATGAGAACAGCTGAGACTATGCTGCGTTTGTTACCTATGGGGCTTTGTGTTGTGGCTCTTGTTATTATGCTCAAAAATCAACAAACTAATGATTATGGTTCCATTACTTACTCTGATCTTGGAACCTTTAGGTAATTTATCCTCTCTTTTTTTTCCGTCTTCCTCTTCTGTCGATTCTTGGTTGGCATCGTTTATGGTTGAAATAGTATTTATTTATGACATTAATATTACATGTGGGCTAGTGTTGTTGGACATTGGCCAGCCCTAAATTAGACGGAACTACACTTTGAGTTTATATCCAGTGAAATTCTATAATCCAGGTCTGAAGATATCGATATACACATCGACTTTACTACTATTTCATAGAGACAGATAAGCTATTTTCGAGAGATTCTTGACTTTATACGGGAAATAAAATAGTGTGATAATCGAGAGAGCTTAAGCATATTATAATAAGGAGAAAAAGGATCTAACAATGATTCTCCTTGTAATAGTGGGTGAATTGGGAATATTACTAAACTTTATCATCATGATTTTACTTGAAATTACTTTACTAGTGATGTGATTATGTAACTATATTTTAGACTGTGAATGCATAGAGCTTAAATTCTCTTGTTATTGATTTCAAAATTGTGGAAATTGAGTTTTAGTTGTCAACTTATTGAAGAAATTTGTGAATTTTGGGGGAAAATTAACCTAATTGTTGAATCTACTGCAGGTATTTAGTACATGCAAATGGAATTTGTGCAGGTTATTCACTTTTATCAGCAATTGTAGCAGTCGTACCTCGTCCCATAACGATGTCTAGAGCCTGGACCTTCTTCCTCCTTGATCAGGTTCCGCTTTTGTGATATCAATCTATGCATACATTTTGAATCATTTGGTTATATGAATTATATTAGTTCGAGAAAAATGGAATAAGAACTTACAGAACCTGCTCTGCTTTCACTTGTGTTTTGTAGTTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGCATATAAAGGAGATCCAGAAGTTTCATGGAGTGAATCATGTGGTTCATTTCGAGGTTTTTGCCACAAAGCTACAGCATCTGTGTCCATTACTTTCATAGTAAGCCTTTGTTATGCAGGGCTTTCGTTGCTTTCGTCTTATCGGCTTTTTAGCAAGTATGATGCACCAGTTGGATCGTACAACAACAAAGGGGGAATTGAGATTGCTAACTATTGAGATTTTGAAACTGATCCCTCTTTAGTTTTGGTTGTTGGTGTTGGTTTTTACTATATCATGTACACGGCTAATGCTAATAAATTAGATAATTAGGTACAATCAAGGATGTTGCTTTACTTTTTCTCTTCTTTTTTTCTTCGTGAAAAGGATGTTGTTTTGTCTTGAAATATCATATCTGGTAAATTTGTGACCTTCAA</genome_strand>
        <mrna_strand>CTCTTACAATAAAATCATTTTTTAGAAAGGAAAAAAAAAAAGCCAAAAAGCCAAAAGAGAGTACAATATTACATAATGAAAACTAGTAGTACAAATATGGCTGGAAGTAGTCCACTACAAAAGAGAGAATTAGAAGATGACAATGAAAGTAGTAGCAGTATGAGAACAGCTGAAACTATGCTGCGTTTGTTACCTATGGGGCTTTGTGTTGTGGCTCTTGTTATTATGCTCAAAAATCAACAAACTAATGATTATGGTTCCATTACTTACTCTGATCTTGGAACCTTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAGTACATGCAAATGGAATTTGTGCAGGTTATTCACTTTTATCAGCAATTGTAGCAGTCGTACCTCGTCCCATAACGATGTCTAGAGCCTGGACCTTCTTCCTCCTTGATCAG..............................................................................................................................TTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGCATATAAAGGAGATCCAGAAGTTTCATGGAGTGAATCATGTGGTTCATTTCGAGGTTTTTGCCACAAAGCTACAGCATCTGTGTCCATTACTTTCATAGTAAGCCTTTGTTATGCAGGGCTTTCGTTGCTTTCGTCTTATCGGCTTTTTAGCAAGTATGATGCACCAGTTGGATCGTACAACAACAAAGGGGGAATTGAGATTGCTAACTATTGAGATTTTGAAACTGATCCCTCTTTAGTTTTGGTTGTTGGTGTTGGTTTTTACTATATCATGTACACGGCTAATGCTAATAAATTAGATAATTAGGTACAATCAAGGATGTTGCTTTACTTTTTCTCTTCTTTTTTTCCTCGGGAAAAGGATGTTGTTTTTGTCTGAAATATCATATCTGGTAAATTTGTGACCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553278" ref_strand="+" ref_description="SGN-E553278 [cTSB-3-P3]">
      <seq>aatcattttttagaaaggaaaaaaaaaaagccaaaaagccaaaagagagtacaatattacataatgaaaactagtagtacaaatatggctggaagtagtccactacaaaagagagaattagaagatgacaatgaaagtagtagcagtatgagaacagctgagactatgctgcgtttgttacctatggggctttgtgttgtggctcttgttattatgctcaaaaatcaacaaactaatgattatggttccattacttactctgatcttggaacctttaggtatttagtacatgcaaatggaatttgtgcaggttattcacttttatcagcaattgtagcagtcgtacctcgtcccataacgatgtctagagcctggaccttcttcctccttgatcagttattgacatatgcaatactggctgctggagctgtatcgacggaggtgatgtatttagtatataaaggagatccagaagtttcatggagtgaatcatgtggttcatttcgaggtttttgccacaaagctacagcatctgtgtccattactttcatagtaagcctttgttatgcagggctttcgttgctttcgtcttatcggctttttagcaagtatgatgcaccagttggatcgtacaacaacaaagggggaattgagattgctaactattgagattttgaaactgatccctctttagttttggttgttggtgttggtttttactatatcatgtacacggctaatgctaataaattagataattaggtacaatcaaggatgttgctttactttttctcttctttttttcttcgtgaaaaggatgttgttttgtcttgaaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="94896" stop="92744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94596" g_stop="94319" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94318" i_stop="93732" i_length="587">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93731" g_stop="93614" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="396" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93613" i_stop="93488" i_length="126">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93487" g_stop="93044" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="840" r_length="444" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E553278" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94596" e_stop="94319"/>
          <exon e_start="93731" e_stop="93614"/>
          <exon e_start="93487" e_stop="93044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATTTTTTAGAAAGGAAAAAAAAAAAGCCAAAAAGCCAAAAGAGAGTACAATATTACATAATGAAAACTAGTAGTACAAATATGGCTGGAAGTAGTCCACTACAAAAGAGAGAATTAGAAGATGACAATGAAAGTAGTAGCAGTATGAGAACAGCTGAGACTATGCTGCGTTTGTTACCTATGGGGCTTTGTGTTGTGGCTCTTGTTATTATGCTCAAAAATCAACAAACTAATGATTATGGTTCCATTACTTACTCTGATCTTGGAACCTTTAGGTAATTTATCCTCTCTTTTTTTTCCGTCTTCCTCTTCTGTCGATTCTTGGTTGGCATCGTTTATGGTTGAAATAGTATTTATTTATGACATTAATATTACATGTGGGCTAGTGTTGTTGGACATTGGCCAGCCCTAAATTAGACGGAACTACACTTTGAGTTTATATCCAGTGAAATTCTATAATCCAGGTCTGAAGATATCGATATACACATCGACTTTACTACTATTTCATAGAGACAGATAAGCTATTTTCGAGAGATTCTTGACTTTATACGGGAAATAAAATAGTGTGATAATCGAGAGAGCTTAAGCATATTATAATAAGGAGAAAAAGGATCTAACAATGATTCTCCTTGTAATAGTGGGTGAATTGGGAATATTACTAAACTTTATCATCATGATTTTACTTGAAATTACTTTACTAGTGATGTGATTATGTAACTATATTTTAGACTGTGAATGCATAGAGCTTAAATTCTCTTGTTATTGATTTCAAAATTGTGGAAATTGAGTTTTAGTTGTCAACTTATTGAAGAAATTTGTGAATTTTGGGGGAAAATTAACCTAATTGTTGAATCTACTGCAGGTATTTAGTACATGCAAATGGAATTTGTGCAGGTTATTCACTTTTATCAGCAATTGTAGCAGTCGTACCTCGTCCCATAACGATGTCTAGAGCCTGGACCTTCTTCCTCCTTGATCAGGTTCCGCTTTTGTGATATCAATCTATGCATACATTTTGAATCATTTGGTTATATGAATTATATTAGTTCGAGAAAAATGGAATAAGAACTTACAGAACCTGCTCTGCTTTCACTTGTGTTTTGTAGTTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGCATATAAAGGAGATCCAGAAGTTTCATGGAGTGAATCATGTGGTTCATTTCGAGGTTTTTGCCACAAAGCTACAGCATCTGTGTCCATTACTTTCATAGTAAGCCTTTGTTATGCAGGGCTTTCGTTGCTTTCGTCTTATCGGCTTTTTAGCAAGTATGATGCACCAGTTGGATCGTACAACAACAAAGGGGGAATTGAGATTGCTAACTATTGAGATTTTGAAACTGATCCCTCTTTAGTTTTGGTTGTTGGTGTTGGTTTTTACTATATCATGTACACGGCTAATGCTAATAAATTAGATAATTAGGTACAATCAAGGATGTTGCTTTACTTTTTCTCTTCTTTTTTTCTTCGTGAAAAGGATGTTGTTTTGTCTTGAAATATC</genome_strand>
        <mrna_strand>AATCATTTTTTAGAAAGGAAAAAAAAAAAGCCAAAAAGCCAAAAGAGAGTACAATATTACATAATGAAAACTAGTAGTACAAATATGGCTGGAAGTAGTCCACTACAAAAGAGAGAATTAGAAGATGACAATGAAAGTAGTAGCAGTATGAGAACAGCTGAGACTATGCTGCGTTTGTTACCTATGGGGCTTTGTGTTGTGGCTCTTGTTATTATGCTCAAAAATCAACAAACTAATGATTATGGTTCCATTACTTACTCTGATCTTGGAACCTTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAGTACATGCAAATGGAATTTGTGCAGGTTATTCACTTTTATCAGCAATTGTAGCAGTCGTACCTCGTCCCATAACGATGTCTAGAGCCTGGACCTTCTTCCTCCTTGATCAG..............................................................................................................................TTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGTATATAAAGGAGATCCAGAAGTTTCATGGAGTGAATCATGTGGTTCATTTCGAGGTTTTTGCCACAAAGCTACAGCATCTGTGTCCATTACTTTCATAGTAAGCCTTTGTTATGCAGGGCTTTCGTTGCTTTCGTCTTATCGGCTTTTTAGCAAGTATGATGCACCAGTTGGATCGTACAACAACAAAGGGGGAATTGAGATTGCTAACTATTGAGATTTTGAAACTGATCCCTCTTTAGTTTTGGTTGTTGGTGTTGGTTTTTACTATATCATGTACACGGCTAATGCTAATAAATTAGATAATTAGGTACAATCAAGGATGTTGCTTTACTTTTTCTCTTCTTTTTTTCTTCGTGAAAAGGATGTTGTTTTGTCTTGAAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718164" ref_strand="+" ref_description="SGN-E718164 [FC03DE12]">
      <seq>gacccaatttcttctcttacaataaaatcattttttagaaaggaaaaaaaaaaagccaaaaagccaaaagagagtacaatattacataatgaaaactagtagtacaaatatggctggaagtagtccactacaaaagagagaattagaagatgacaatgaaagtagtagcagtatgagaacagctgaaactatgctgcgtttgttacctatggggctttgtgttggggctctggttattatgctcaaaaatcaacaaactaatgattatggttccattacttactctgatcttggaacctttaggtatttagtacatgcaaatggaatttgtgcaggttattcacttttatcagcaattgtagcagtcgtacctcgtcccataacgatgtctagagcctggaccttcttcctccttgatcagttattgacatatgcaatactggctgctggagctgtatcgacggaggtgatgtatttagcatataaaggagatccaaaagtttcatggagtgaatcatgtggttcatttcgaggtttttgccacaaagctacagcatctgtgtccattactttcatagaaagcctttgttatgcagggctttcgttgctttcgtcttatcggctttttagcaagtatgatgcaccagttggatcgtacaacaacaaagggggaattgagattgctaactattgagattttgaaactgatccctctttagttttggttgttggtgttggtttttactatatcatgtacacggctaatgctaataaattagataattaggtacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="94920" stop="92815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94621" g_stop="94319" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94318" i_stop="93732" i_length="587">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93731" g_stop="93614" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="421" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93613" i_stop="93488" i_length="126">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93487" g_stop="93115" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="794" r_length="373" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E718164" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94621" e_stop="94319"/>
          <exon e_start="93731" e_stop="93614"/>
          <exon e_start="93487" e_stop="93115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCAATTTCTTCTCTTACAATAAAATCATTTTTTAGAAAGGAAAAAAAAAAAGCCAAAAAGCCAAAAGAGAGTACAATATTACATAATGAAAACTAGTAGTACAAATATGGCTGGAAGTAGTCCACTACAAAAGAGAGAATTAGAAGATGACAATGAAAGTAGTAGCAGTATGAGAACAGCTGAGACTATGCTGCGTTTGTTACCTATGGGGCTTTGTGTTGTGGCTCTTGTTATTATGCTCAAAAATCAACAAACTAATGATTATGGTTCCATTACTTACTCTGATCTTGGAACCTTTAGGTAATTTATCCTCTCTTTTTTTTCCGTCTTCCTCTTCTGTCGATTCTTGGTTGGCATCGTTTATGGTTGAAATAGTATTTATTTATGACATTAATATTACATGTGGGCTAGTGTTGTTGGACATTGGCCAGCCCTAAATTAGACGGAACTACACTTTGAGTTTATATCCAGTGAAATTCTATAATCCAGGTCTGAAGATATCGATATACACATCGACTTTACTACTATTTCATAGAGACAGATAAGCTATTTTCGAGAGATTCTTGACTTTATACGGGAAATAAAATAGTGTGATAATCGAGAGAGCTTAAGCATATTATAATAAGGAGAAAAAGGATCTAACAATGATTCTCCTTGTAATAGTGGGTGAATTGGGAATATTACTAAACTTTATCATCATGATTTTACTTGAAATTACTTTACTAGTGATGTGATTATGTAACTATATTTTAGACTGTGAATGCATAGAGCTTAAATTCTCTTGTTATTGATTTCAAAATTGTGGAAATTGAGTTTTAGTTGTCAACTTATTGAAGAAATTTGTGAATTTTGGGGGAAAATTAACCTAATTGTTGAATCTACTGCAGGTATTTAGTACATGCAAATGGAATTTGTGCAGGTTATTCACTTTTATCAGCAATTGTAGCAGTCGTACCTCGTCCCATAACGATGTCTAGAGCCTGGACCTTCTTCCTCCTTGATCAGGTTCCGCTTTTGTGATATCAATCTATGCATACATTTTGAATCATTTGGTTATATGAATTATATTAGTTCGAGAAAAATGGAATAAGAACTTACAGAACCTGCTCTGCTTTCACTTGTGTTTTGTAGTTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGCATATAAAGGAGATCCAGAAGTTTCATGGAGTGAATCATGTGGTTCATTTCGAGGTTTTTGCCACAAAGCTACAGCATCTGTGTCCATTACTTTCATAGTAAGCCTTTGTTATGCAGGGCTTTCGTTGCTTTCGTCTTATCGGCTTTTTAGCAAGTATGATGCACCAGTTGGATCGTACAACAACAAAGGGGGAATTGAGATTGCTAACTATTGAGATTTTGAAACTGATCCCTCTTTAGTTTTGGTTGTTGGTGTTGGTTTTTACTATATCATGTACACGGCTAATGCTAATAAATTAGATAATTAGGTACAAT</genome_strand>
        <mrna_strand>GACCCAATTTCTTCTCTTACAATAAAATCATTTTTTAGAAAGGAAAAAAAAAAAGCCAAAAAGCCAAAAGAGAGTACAATATTACATAATGAAAACTAGTAGTACAAATATGGCTGGAAGTAGTCCACTACAAAAGAGAGAATTAGAAGATGACAATGAAAGTAGTAGCAGTATGAGAACAGCTGAAACTATGCTGCGTTTGTTACCTATGGGGCTTTGTGTTGGGGCTCTGGTTATTATGCTCAAAAATCAACAAACTAATGATTATGGTTCCATTACTTACTCTGATCTTGGAACCTTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAGTACATGCAAATGGAATTTGTGCAGGTTATTCACTTTTATCAGCAATTGTAGCAGTCGTACCTCGTCCCATAACGATGTCTAGAGCCTGGACCTTCTTCCTCCTTGATCAG..............................................................................................................................TTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGCATATAAAGGAGATCCAAAAGTTTCATGGAGTGAATCATGTGGTTCATTTCGAGGTTTTTGCCACAAAGCTACAGCATCTGTGTCCATTACTTTCATAGAAAGCCTTTGTTATGCAGGGCTTTCGTTGCTTTCGTCTTATCGGCTTTTTAGCAAGTATGATGCACCAGTTGGATCGTACAACAACAAAGGGGGAATTGAGATTGCTAACTATTGAGATTTTGAAACTGATCCCTCTTTAGTTTTGGTTGTTGGTGTTGGTTTTTACTATATCATGTACACGGCTAATGCTAATAAATTAGATAATTAGGTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722950" ref_strand="+" ref_description="SGN-E722950 [FC18DD07]">
      <seq>gactagtagtgctacctatcattcacccaatttcttctcttacaataaaatcattttttagaaaggaaaaaaaaaaagccaaaaagccaaaagagagtacaatattacataatgaaaactagtagtacaaatatggctggaagtagcccactacaaaagagagaattaaaaaatgacaatgaaagtagtagcagtatgaaaacagctgaaactatgctgcgtttgttacctatggggctttgtgttggggctcttgttattatgctcaaaaatcaacaaactaatgattatggttccattacttactctgatcttggaacctttaggtatttagtacatgcaaatggaatttgtgcaggttattcacttttatcagcaattgtagcagtcgtacctcgtcccataacaatgtctaaagccgggaccttcttcctccttgatcagttattgacatatgcaatactggctgctggagctgtatcgacggaggtgatgtatttagcatataaaggaaatccaaaagtttcagggagtgaatcatgtggttcatttcaaggtttttgccacaaagctacagcatctgtgtccattactttcatagaaagcctttgttatgcagggctttcgttgctttcgtcttatcggctttttagcaagtatgatgcaccagttggatcgtacaacaacaaagggggaattgagattgctaactattgaaattttgaaactgatccctctttagttttggttgttggtgtgggtttttactatatcatgtacacggctaatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="94943" stop="92839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94644" g_stop="94319" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94318" i_stop="93732" i_length="587">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93731" g_stop="93614" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="444" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93613" i_stop="93488" i_length="126">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93487" g_stop="93139" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="793" r_length="349" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E722950" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94644" e_stop="94319"/>
          <exon e_start="93731" e_stop="93614"/>
          <exon e_start="93487" e_stop="93139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAGTAGTGCTACCTATCATTCACCCAATTTCTTCTCTTACAATAAAATCATTTTTTAGAAAGGAAAAAAAAAAAGCCAAAAAGCCAAAAGAGAGTACAATATTACATAATGAAAACTAGTAGTACAAATATGGCTGGAAGTAGTCCACTACAAAAGAGAGAATTAGAAGATGACAATGAAAGTAGTAGCAGTATGAGAACAGCTGAGACTATGCTGCGTTTGTTACCTATGGGGCTTTGTGTTGTGGCTCTTGTTATTATGCTCAAAAATCAACAAACTAATGATTATGGTTCCATTACTTACTCTGATCTTGGAACCTTTAGGTAATTTATCCTCTCTTTTTTTTCCGTCTTCCTCTTCTGTCGATTCTTGGTTGGCATCGTTTATGGTTGAAATAGTATTTATTTATGACATTAATATTACATGTGGGCTAGTGTTGTTGGACATTGGCCAGCCCTAAATTAGACGGAACTACACTTTGAGTTTATATCCAGTGAAATTCTATAATCCAGGTCTGAAGATATCGATATACACATCGACTTTACTACTATTTCATAGAGACAGATAAGCTATTTTCGAGAGATTCTTGACTTTATACGGGAAATAAAATAGTGTGATAATCGAGAGAGCTTAAGCATATTATAATAAGGAGAAAAAGGATCTAACAATGATTCTCCTTGTAATAGTGGGTGAATTGGGAATATTACTAAACTTTATCATCATGATTTTACTTGAAATTACTTTACTAGTGATGTGATTATGTAACTATATTTTAGACTGTGAATGCATAGAGCTTAAATTCTCTTGTTATTGATTTCAAAATTGTGGAAATTGAGTTTTAGTTGTCAACTTATTGAAGAAATTTGTGAATTTTGGGGGAAAATTAACCTAATTGTTGAATCTACTGCAGGTATTTAGTACATGCAAATGGAATTTGTGCAGGTTATTCACTTTTATCAGCAATTGTAGCAGTCGTACCTCGTCCCATAACGATGTCTAGAGCCTGGACCTTCTTCCTCCTTGATCAGGTTCCGCTTTTGTGATATCAATCTATGCATACATTTTGAATCATTTGGTTATATGAATTATATTAGTTCGAGAAAAATGGAATAAGAACTTACAGAACCTGCTCTGCTTTCACTTGTGTTTTGTAGTTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGCATATAAAGGAGATCCAGAAGTTTCATGGAGTGAATCATGTGGTTCATTTCGAGGTTTTTGCCACAAAGCTACAGCATCTGTGTCCATTACTTTCATAGTAAGCCTTTGTTATGCAGGGCTTTCGTTGCTTTCGTCTTATCGGCTTTTTAGCAAGTATGATGCACCAGTTGGATCGTACAACAACAAAGGGGGAATTGAGATTGCTAACTATTGAGATTTTGAAACTGATCCCTCTTTAGTTTTGGTTGTTGGTGTTGGTTTTTACTATATCATGTACACGGCTAATGCTA</genome_strand>
        <mrna_strand>GACTAGTAGTGCTACCTATCATTCACCCAATTTCTTCTCTTACAATAAAATCATTTTTTAGAAAGGAAAAAAAAAAAGCCAAAAAGCCAAAAGAGAGTACAATATTACATAATGAAAACTAGTAGTACAAATATGGCTGGAAGTAGCCCACTACAAAAGAGAGAATTAAAAAATGACAATGAAAGTAGTAGCAGTATGAAAACAGCTGAAACTATGCTGCGTTTGTTACCTATGGGGCTTTGTGTTGGGGCTCTTGTTATTATGCTCAAAAATCAACAAACTAATGATTATGGTTCCATTACTTACTCTGATCTTGGAACCTTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAGTACATGCAAATGGAATTTGTGCAGGTTATTCACTTTTATCAGCAATTGTAGCAGTCGTACCTCGTCCCATAACAATGTCTAAAGCCGGGACCTTCTTCCTCCTTGATCAG..............................................................................................................................TTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGCATATAAAGGAAATCCAAAAGTTTCAGGGAGTGAATCATGTGGTTCATTTCAAGGTTTTTGCCACAAAGCTACAGCATCTGTGTCCATTACTTTCATAGAAAGCCTTTGTTATGCAGGGCTTTCGTTGCTTTCGTCTTATCGGCTTTTTAGCAAGTATGATGCACCAGTTGGATCGTACAACAACAAAGGGGGAATTGAGATTGCTAACTATTGAAATTTTGAAACTGATCCCTCTTTAGTTTTGGTTGTTGGTGTGGGTTTTTACTATATCATGTACACGGCTAATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367768" ref_strand="+" ref_description="SGN-E367768 [cLPT-14-F13]">
      <seq>attatttcttagaaacaaaaagaaaaaaaaaaaaagccaaaaagccaaaagagagtacaatattacataatgaaaagtagtagtacaaatatggctggaagtagtccactacaaaagagagaattagaagatgacaatgaaagtagtagcagtatgagaacagctgagaccatgctgcgtttgatgcctatggggctttgtgttggggctcttgttattatgctcaaaaatcaacaaactaatgattatggttccattacttactctgatcttggaacctttaggtatttagtacatgcaaatggaatttgtgcaggttattcacttttatcagcaattgtagcagtcgtacctcgttccataacgatgtctagagcctggactttcttcctccttgatcagttattgacatatgcaatactggctgctggagctgtatcgacggaggtgatgtatttagcatataaaggagatccagaagtttcatggagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="94878" stop="93097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94583" g_stop="94319" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="284" r_length="265" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94318" i_stop="93732" i_length="587">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93731" g_stop="93614" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="402" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93613" i_stop="93488" i_length="126">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93487" g_stop="93397" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="493" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E367768" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94583" e_stop="94319"/>
          <exon e_start="93731" e_stop="93614"/>
          <exon e_start="93487" e_stop="93397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAAAAAAAAAAAGCCAAAAAGCCAAAAGAGAGTACAATATTACATAATGAAAACTAGTAGTACAAATATGGCTGGAAGTAGTCCACTACAAAAGAGAGAATTAGAAGATGACAATGAAAGTAGTAGCAGTATGAGAACAGCTGAGACTATGCTGCGTTTGTTACCTATGGGGCTTTGTGTTGTGGCTCTTGTTATTATGCTCAAAAATCAACAAACTAATGATTATGGTTCCATTACTTACTCTGATCTTGGAACCTTTAGGTAATTTATCCTCTCTTTTTTTTCCGTCTTCCTCTTCTGTCGATTCTTGGTTGGCATCGTTTATGGTTGAAATAGTATTTATTTATGACATTAATATTACATGTGGGCTAGTGTTGTTGGACATTGGCCAGCCCTAAATTAGACGGAACTACACTTTGAGTTTATATCCAGTGAAATTCTATAATCCAGGTCTGAAGATATCGATATACACATCGACTTTACTACTATTTCATAGAGACAGATAAGCTATTTTCGAGAGATTCTTGACTTTATACGGGAAATAAAATAGTGTGATAATCGAGAGAGCTTAAGCATATTATAATAAGGAGAAAAAGGATCTAACAATGATTCTCCTTGTAATAGTGGGTGAATTGGGAATATTACTAAACTTTATCATCATGATTTTACTTGAAATTACTTTACTAGTGATGTGATTATGTAACTATATTTTAGACTGTGAATGCATAGAGCTTAAATTCTCTTGTTATTGATTTCAAAATTGTGGAAATTGAGTTTTAGTTGTCAACTTATTGAAGAAATTTGTGAATTTTGGGGGAAAATTAACCTAATTGTTGAATCTACTGCAGGTATTTAGTACATGCAAATGGAATTTGTGCAGGTTATTCACTTTTATCAGCAATTGTAGCAGTCGTACCTCGTCCCATAACGATGTCTAGAGCCTGGACCTTCTTCCTCCTTGATCAGGTTCCGCTTTTGTGATATCAATCTATGCATACATTTTGAATCATTTGGTTATATGAATTATATTAGTTCGAGAAAAATGGAATAAGAACTTACAGAACCTGCTCTGCTTTCACTTGTGTTTTGTAGTTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGCATATAAAGGAGATCCAGAAGTTTCATGGAGTG</genome_strand>
        <mrna_strand>AAGAAAAAAAAAAAAAGCCAAAAAGCCAAAAGAGAGTACAATATTACATAATGAAAAGTAGTAGTACAAATATGGCTGGAAGTAGTCCACTACAAAAGAGAGAATTAGAAGATGACAATGAAAGTAGTAGCAGTATGAGAACAGCTGAGACCATGCTGCGTTTGATGCCTATGGGGCTTTGTGTTGGGGCTCTTGTTATTATGCTCAAAAATCAACAAACTAATGATTATGGTTCCATTACTTACTCTGATCTTGGAACCTTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTAGTACATGCAAATGGAATTTGTGCAGGTTATTCACTTTTATCAGCAATTGTAGCAGTCGTACCTCGTTCCATAACGATGTCTAGAGCCTGGACTTTCTTCCTCCTTGATCAG..............................................................................................................................TTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGCATATAAAGGAGATCCAGAAGTTTCATGGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332802" ref_strand="+" ref_description="SGN-E332802 [cTOD-18-L23]">
      <seq>gataaagaggctcaggcacagatgaatgaggagctttctggttggaagcttgtggtgggagatgttttcagagagccaaatcactcgaagttactgtgtgtgatgattggagatggggttcaaattactggaatggcagttgtcactattgtttttgcagcatttggtttcatgtcaccagcttcacgaggcatgctgctaacaggcatgatattgctttatctttttctgggaattgctgctggttacgttagtgtgcgtgcttggagaacaataaagggtacttcggaaagttggagatctgttgcatggtcaactgcatgcttctttcctgggattgtctttgtcatcctcactgtgctgaatttcatcctttggggaagcaagagcactggcgcactccccatctcattatatttcattctcatatcactttggttctgtatttcagtgcctctcaccctcgtgggaggatatttgggcactcgagctgagcctattcaatatccagtgaggactaaccagattcctagggagatccctgcacgcaagtatccctcttggcttcttgttcttggtgctggaactctgccatttggaaccctctttattgaactcttcttcatcctctctagtatttggcttggaagattctactatgttttcggttttctgcttatagtcctcctcctgttgggtactgtttgtgctgaagtttcagttgtgctcacttatatgcacctttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="101589" stop="102937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101889" g_stop="102637" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E332802" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101889" e_stop="102637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAGAGGCTCAGGCACAGATGAATGAGGAGCTTTCTGGTTGGAAGCTTGTGGTGGGAGATGTTTTCAGAGAGCCAAATCACTCGAAGTTACTGTGTGTGATGATTGGAGATGGGGTTCAAATTACTGGAATGGCAGTTGTCACTATTGTTTTTGCAGCATTTGGTTTCATGTCACCAGCTTCACGAGGCATGCTGCTAACAGGCATGATATTGCTTTATCTTTTTCTGGGAATTGCTGCTGGTTACGTTAGTGTGCGTGCTTGGAGAACAATAAAGGGTACTTCGGAAAGTTGGAGATCTGTTGCATGGTCAACTGCATGCTTCTTTCCTGGGATTGTCTTTGTCATCCTCACTGTGCTGAATTTCATCCTTTGGGGAAGCAAGAGCACTGGCGCACTCCCCATCTCATTATATTTCATTCTCATATCACTTTGGTTCTGTATTTCAGTGCCTCTCACCCTCGTGGGAGGATATTTGGGCACTCGAGCTGAGCCTATTCAATATCCAGTGAGGACTAACCAGATTCCTAGGGAGATCCCTGCACGCAAGTATCCCTCTTGGCTTCTTGTTCTTGGTGCTGGAACTCTGCCATTTGGAACCCTCTTTATTGAACTCTTCTTCATCCTCTCTAGTATTTGGCTTGGAAGATTCTACTATGTTTTCGGTTTTCTGCTTATAGTCCTCCTCCTGTTGGTTACTGTTTGTGCTGAAGTTTCAGTTGTGCTCACTTATATGCACCTTTGTGT</genome_strand>
        <mrna_strand>GATAAAGAGGCTCAGGCACAGATGAATGAGGAGCTTTCTGGTTGGAAGCTTGTGGTGGGAGATGTTTTCAGAGAGCCAAATCACTCGAAGTTACTGTGTGTGATGATTGGAGATGGGGTTCAAATTACTGGAATGGCAGTTGTCACTATTGTTTTTGCAGCATTTGGTTTCATGTCACCAGCTTCACGAGGCATGCTGCTAACAGGCATGATATTGCTTTATCTTTTTCTGGGAATTGCTGCTGGTTACGTTAGTGTGCGTGCTTGGAGAACAATAAAGGGTACTTCGGAAAGTTGGAGATCTGTTGCATGGTCAACTGCATGCTTCTTTCCTGGGATTGTCTTTGTCATCCTCACTGTGCTGAATTTCATCCTTTGGGGAAGCAAGAGCACTGGCGCACTCCCCATCTCATTATATTTCATTCTCATATCACTTTGGTTCTGTATTTCAGTGCCTCTCACCCTCGTGGGAGGATATTTGGGCACTCGAGCTGAGCCTATTCAATATCCAGTGAGGACTAACCAGATTCCTAGGGAGATCCCTGCACGCAAGTATCCCTCTTGGCTTCTTGTTCTTGGTGCTGGAACTCTGCCATTTGGAACCCTCTTTATTGAACTCTTCTTCATCCTCTCTAGTATTTGGCTTGGAAGATTCTACTATGTTTTCGGTTTTCTGCTTATAGTCCTCCTCCTGTTGGGTACTGTTTGTGCTGAAGTTTCAGTTGTGCTCACTTATATGCACCTTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702279" ref_strand="+" ref_description="SGN-E702279 [FA18BB08]">
      <seq>gcttcacgaggcatgctgctaacaggcatgatattgctttatctttttctgggaattgctgctggttacgttagtgtgcgtgcttggagaacaataaagggtacttcggaaagttggagatctgttgcatggtcaactgcatgcttctttcctgggattgtctttgtcatcctcactgtgctgaatttcatcctttggggaagcaagagcactggcgcactccccatctcattatatttcattctcatatcactttggttctgtatttcagtgcctctcaccctcgtgggaggatatttgggcactcgagctgagcctattcaatatccagtgaggactaaccagattcctagggagatccctgcacgcaagtatccctcttggcttcttgttcttggtgctggaactctgccatttggaaccctctttattgaactcttcttcatcctctctagtatttggcttggaagattctactatgttttcggttttctgcttatagtcctcctcctgttggttactgtttgtgctgaagtttcagttgtgctcacttatatgcacctttgtgtggaggattggatgtggtggtggaaagcattctatgcatcaggttctgtttctctatatgtgttcctctactccatcaactacttggtttttgaccttcagagcttaagtggcccagtatcagctatactttaccttggctactctttgataatggcagtagcgatcatgctttcaactggcacgattggcttcctcacatcattttactttgtgcattatctttttgcatcagtgaagattgactgaacaggtgtgcagagccgcaattattattgttagatggctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="101769" stop="103226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102069" g_stop="102926" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="857" r_length="857" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E702279" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102069" e_stop="102926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCACGAGGCATGCTGCTAACAGGCATGATATTGCTTTATCTTTTTCTGGGAATTGCTGCTGGTTACGTTAGTGTGCGTGCTTGGAGAACAATAAAGGGTACTTCGGAAAGTTGGAGATCTGTTGCATGGTCAACTGCATGCTTCTTTCCTGGGATTGTCTTTGTCATCCTCACTGTGCTGAATTTCATCCTTTGGGGAAGCAAGAGCACTGGCGCACTCCCCATCTCATTATATTTCATTCTCATATCACTTTGGTTCTGTATTTCAGTGCCTCTCACCCTCGTGGGAGGATATTTGGGCACTCGAGCTGAGCCTATTCAATATCCAGTGAGGACTAACCAGATTCCTAGGGAGATCCCTGCACGCAAGTATCCCTCTTGGCTTCTTGTTCTTGGTGCTGGAACTCTGCCATTTGGAACCCTCTTTATTGAACTCTTCTTCATCCTCTCTAGTATTTGGCTTGGAAGATTCTACTATGTTTTCGGTTTTCTGCTTATAGTCCTCCTCCTGTTGGTTACTGTTTGTGCTGAAGTTTCAGTTGTGCTCACTTATATGCACCTTTGTGTGGAGGATTGGATGTGGTGGTGGAAAGCATTCTATGCATCAGGTTCTGTTTCTCTATATGTGTTCCTCTACTCCATCAACTACTTGGTTTTTGACCTTCAGAGCTTAAGTGGCCCAGTATCAGCTATACTTTACCTTGGCTACTCTTTGATAATGGCAGTAGCGATCATGCTTTCAACTGGCACGATTGGCTTCCTCACATCATTTTACTTTGTGCATTATCTTTTTGCATCAGTGAAGATTGACTGAACAGGTGTGCAGAGCCGCAATTATTATTGTTTAGATGGCTAA</genome_strand>
        <mrna_strand>GCTTCACGAGGCATGCTGCTAACAGGCATGATATTGCTTTATCTTTTTCTGGGAATTGCTGCTGGTTACGTTAGTGTGCGTGCTTGGAGAACAATAAAGGGTACTTCGGAAAGTTGGAGATCTGTTGCATGGTCAACTGCATGCTTCTTTCCTGGGATTGTCTTTGTCATCCTCACTGTGCTGAATTTCATCCTTTGGGGAAGCAAGAGCACTGGCGCACTCCCCATCTCATTATATTTCATTCTCATATCACTTTGGTTCTGTATTTCAGTGCCTCTCACCCTCGTGGGAGGATATTTGGGCACTCGAGCTGAGCCTATTCAATATCCAGTGAGGACTAACCAGATTCCTAGGGAGATCCCTGCACGCAAGTATCCCTCTTGGCTTCTTGTTCTTGGTGCTGGAACTCTGCCATTTGGAACCCTCTTTATTGAACTCTTCTTCATCCTCTCTAGTATTTGGCTTGGAAGATTCTACTATGTTTTCGGTTTTCTGCTTATAGTCCTCCTCCTGTTGGTTACTGTTTGTGCTGAAGTTTCAGTTGTGCTCACTTATATGCACCTTTGTGTGGAGGATTGGATGTGGTGGTGGAAAGCATTCTATGCATCAGGTTCTGTTTCTCTATATGTGTTCCTCTACTCCATCAACTACTTGGTTTTTGACCTTCAGAGCTTAAGTGGCCCAGTATCAGCTATACTTTACCTTGGCTACTCTTTGATAATGGCAGTAGCGATCATGCTTTCAACTGGCACGATTGGCTTCCTCACATCATTTTACTTTGTGCATTATCTTTTTGCATCAGTGAAGATTGACTGAACAGGTGTGCAGAGCCGCAATTATTATTG-TTAGATGGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357467" ref_strand="+" ref_description="SGN-E357467 [cTOS-23-M1]">
      <seq>ttggttactgtttgtgctgaagtttcagttgtgctcacttatatgcacctttgtgttgaggattggatgtggtggtggaaagcattctatgcatcaggttctgtttctctatatgtgttcctctactccatcaactacttggtttttgaccttcagagcttaagtggcccagtatcagctatactttaccttggctactctttgataatggcagtagcgatcatgctttcaactggcacgattggcttcctcacatcattttactttgtgcattatctttttgcatcagtgaagattgactgaacaggtgtgcagagccgcaattattattgtttagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="102282" stop="103221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102582" g_stop="102921" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E357467" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102582" e_stop="102921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTACTGTTTGTGCTGAAGTTTCAGTTGTGCTCACTTATATGCACCTTTGTGTGGAGGATTGGATGTGGTGGTGGAAAGCATTCTATGCATCAGGTTCTGTTTCTCTATATGTGTTCCTCTACTCCATCAACTACTTGGTTTTTGACCTTCAGAGCTTAAGTGGCCCAGTATCAGCTATACTTTACCTTGGCTACTCTTTGATAATGGCAGTAGCGATCATGCTTTCAACTGGCACGATTGGCTTCCTCACATCATTTTACTTTGTGCATTATCTTTTTGCATCAGTGAAGATTGACTGAACAGGTGTGCAGAGCCGCAATTATTATTGTTTAGATG</genome_strand>
        <mrna_strand>TTGGTTACTGTTTGTGCTGAAGTTTCAGTTGTGCTCACTTATATGCACCTTTGTGTTGAGGATTGGATGTGGTGGTGGAAAGCATTCTATGCATCAGGTTCTGTTTCTCTATATGTGTTCCTCTACTCCATCAACTACTTGGTTTTTGACCTTCAGAGCTTAAGTGGCCCAGTATCAGCTATACTTTACCTTGGCTACTCTTTGATAATGGCAGTAGCGATCATGCTTTCAACTGGCACGATTGGCTTCCTCACATCATTTTACTTTGTGCATTATCTTTTTGCATCAGTGAAGATTGACTGAACAGGTGTGCAGAGCCGCAATTATTATTGTTTAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244650" ref_strand="+" ref_description="SGN-E244650 [cLED-38-E15]">
      <seq>aactacttggtttttgaccttcagagcttaagtggcccagtatcagctatactttaccttggctactctttgataatggcagtagcgatcatgctttcaactggcacgattggcttcctcacatcattttactttgtgcattatctttttgcatcagtgaagattgactgaacaggtgtgcagagccgcaattattattgtttagatggctaaagaaagacctgttgtgcattgtggaactttacatagtcctaccagaaagagtatctaaaattgcagatgagggacgtttgtacttttctattttactgtaatgttctgaggctagataatttgttagtccaaaagctattgtttagtattttcatctttcattgtgttttaattacattttccccatatttcttgtatctttacaacctctactttcaatgggaaaattaccagaaaactcattgtagctttgaaattgaaaagaaagataggtttaaggtggttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="102414" stop="103515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102714" g_stop="103215" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E244650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102714" e_stop="103215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTACTTGGTTTTTGACCTTCAGAGCTTAAGTGGCCCAGTATCAGCTATACTTTACCTTGGCTACTCTTTGATAATGGCAGTAGCGATCATGCTTTCAACTGGCACGATTGGCTTCCTCACATCATTTTACTTTGTGCATTATCTTTTTGCATCAGTGAAGATTGACTGAACAGGTGTGCAGAGCCGCAATTATTATTGTTTAGATGGCTAAAGAAAGACCTGTTGTGCATTGTGGAACTTTACATAGTCCTACCAGAAAGAGTATCTAAAATTGCAGATGAGGGACGTTTGTACTTTTCTATTTTACTGTAATGTTCTGAGGCTAGATAATTTGTTAGTCCAAAAGCTATTGTTTAGTATTTTCATCTTTCATTGTGTTTTAATTACATTTTCCCCATATTTCTTGTATCTTTACAACCTCTACTTTCAATGGGAAAATTACCAGAAAACTCATTGTAGCTTTGAAATTGAAAAGAAAGATAGGTTTAAGGTGGTTTTGT</genome_strand>
        <mrna_strand>AACTACTTGGTTTTTGACCTTCAGAGCTTAAGTGGCCCAGTATCAGCTATACTTTACCTTGGCTACTCTTTGATAATGGCAGTAGCGATCATGCTTTCAACTGGCACGATTGGCTTCCTCACATCATTTTACTTTGTGCATTATCTTTTTGCATCAGTGAAGATTGACTGAACAGGTGTGCAGAGCCGCAATTATTATTGTTTAGATGGCTAAAGAAAGACCTGTTGTGCATTGTGGAACTTTACATAGTCCTACCAGAAAGAGTATCTAAAATTGCAGATGAGGGACGTTTGTACTTTTCTATTTTACTGTAATGTTCTGAGGCTAGATAATTTGTTAGTCCAAAAGCTATTGTTTAGTATTTTCATCTTTCATTGTGTTTTAATTACATTTTCCCCATATTTCTTGTATCTTTACAACCTCTACTTTCAATGGGAAAATTACCAGAAAACTCATTGTAGCTTTGAAATTGAAAAGAAAGATAGGTTTAAGGTGGTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344587" ref_strand="+" ref_description="SGN-E344587 [cTOF-14-M23]">
      <seq>gcgatcatgctttcaactggcacgattggcttcctcacatcattttactttgtgcattatctttttgcatcagtgaagattgactgaacaggtgtgcagagccgcaattattattgtttagatggctaaagaaagacctgttgtgcattgtggaactttacatagtcctaccagaaagagtatctaaaattgcagatgagggacgtttgtacttttctattttactgtaatgttctgaggctagataatttgttagtccaaaagctattgtttagtattttcatctttcattgtgttttaattacattttccccatatttcttgtatctttacaacctctactttcaatgggaaaattaccagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="102498" stop="103464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102798" g_stop="103174" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E344587" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102798" e_stop="103174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATCATGCTTTCAACTGGCACGATTGGCTTCCTCACATCATTTTACTTTGTGCATTATCTTTTTGCATCAGTGAAGATTGACTGAACAGGTGTGCAGAGCCGCAATTATTATTGTTTAGATGGCTAAAGAAAGACCTGTTGTGCATTGTGGAACTTTACATAGTCCTACCAGAAAGAGTATCTAAAATTGCAGATGAGGGACGTTTGTACTTTTCTATTTTACTGTAATGTTCTGAGGCTAGATAATTTGTTAGTCCAAAAGCTATTGTTTAGTATTTTCATCTTTCATTGTGTTTTAATTACATTTTCCCCATATTTCTTGTATCTTTACAACCTCTACTTTCAATGGGAAAATTACCAGAAAACTCATTGTAG</genome_strand>
        <mrna_strand>GCGATCATGCTTTCAACTGGCACGATTGGCTTCCTCACATCATTTTACTTTGTGCATTATCTTTTTGCATCAGTGAAGATTGACTGAACAGGTGTGCAGAGCCGCAATTATTATTGTTTAGATGGCTAAAGAAAGACCTGTTGTGCATTGTGGAACTTTACATAGTCCTACCAGAAAGAGTATCTAAAATTGCAGATGAGGGACGTTTGTACTTTTCTATTTTACTGTAATGTTCTGAGGCTAGATAATTTGTTAGTCCAAAAGCTATTGTTTAGTATTTTCATCTTTCATTGTGTTTTAATTACATTTTCCCCATATTTCTTGTATCTTTACAACCTCTACTTTCAATGGGAAAATTACCAGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347066" ref_strand="+" ref_description="SGN-E347066 [cTOF-25-P13]">
      <seq>ttatataatggtatggatagaagatatgcagcttcacttacttgagctttgcaaggcagaaaaggtgttatggtctggagttgttacaaactattcgacttctccttttgctgaagaaatgttcgaaaaaaccaaacaaatgttaactgagtatgaagtagtgatcaaccgttggcctcagtacaccatcattctggagaatgctgttgctaatgtagaaagagcaattataaaagccatggagaaacagtacaatgagatcttgacccccctgaaagacagcattccaaagaagctcggaatgcaagttcagaaattagcaagaaggcaatcaactactctttatagcattcctaatcagttggggactttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="111115" stop="112424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111415" g_stop="111478" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111479" i_stop="111609" i_length="131">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.392" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111610" g_stop="111747" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="202" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111748" i_stop="111849" i_length="102">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111850" g_stop="112008" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="361" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112009" i_stop="112110" i_length="102">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112111" g_stop="112124" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="375" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E347066" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111415" e_stop="111478"/>
          <exon e_start="111610" e_stop="111747"/>
          <exon e_start="111850" e_stop="112008"/>
          <exon e_start="112111" e_stop="112124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATAATGGTATGGATAGAAGATATGCAGCTTCACTTACTTGAGCTTTGCAAGGCAGAAAAGGTACATACCACTGCTCTTAATACTCACTTAAATACTCCTGTCTCTTTTGTGCATCATAGGCTAAAGGTTTTCTGGAGATGCAATTGGTTTCATGAGGCAGCATGTTTCTCACACTCTATCACCTCTTTCAGGTGTTATGGTCTGGAGTTGTTACAAACTATTCGACTTCTCCTTTTGCTGAAGAAATGTTCGAAAAAACCAAACAAATGTTAACTGAGTATGAAGTAGTGATCAACCGTTGGCCTCAGTACACCATCATTCTGGAGAATGTAAGTTCTATTTTGCTATCCAGGGAATATGTAGACCGATGCTTGATGTGTTTTATGACCCTTCTGTTTGCTGATAATGCTTTCTGTTGATGTCATATATAGGCTGTTGCTAATGTAGAAAGAGCAATTATAAAAGCCATGGAGAAACAGTACAATGAGATCTTGACCCCCCTGAAAGACAGCATTCCAAAGAAGCTCGGAATGCAAGTTCAGAAATTAGCAAGAAGGCAATCAACTACTCTTTATAGCATTCCTAATCAGGCAAGTGCTAATAATAGCTGGATAGATTATAAGAATTAGTCTCTTTATGAAAGGTGAATATTAAAAGAGAGAGACTAAATATGCTTGGCCTTGTTTTGACAGTTGGGGACTTTCTT</genome_strand>
        <mrna_strand>TTATATAATGGTATGGATAGAAGATATGCAGCTTCACTTACTTGAGCTTTGCAAGGCAGAAAAG...................................................................................................................................GTGTTATGGTCTGGAGTTGTTACAAACTATTCGACTTCTCCTTTTGCTGAAGAAATGTTCGAAAAAACCAAACAAATGTTAACTGAGTATGAAGTAGTGATCAACCGTTGGCCTCAGTACACCATCATTCTGGAGAAT......................................................................................................GCTGTTGCTAATGTAGAAAGAGCAATTATAAAAGCCATGGAGAAACAGTACAATGAGATCTTGACCCCCCTGAAAGACAGCATTCCAAAGAAGCTCGGAATGCAAGTTCAGAAATTAGCAAGAAGGCAATCAACTACTCTTTATAGCATTCCTAATCAG......................................................................................................TTGGGGACTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226559" ref_strand="+" ref_description="SGN-E226559 [cLEL-26-J20](-)">
      <seq>cccaaatgcaaagattgcaaggaaacgcgttcaaaagaaagatattgagccccctcgttcaattgtcgaagctcgagctatactctgtagagacactagcaactgtccagattcctccaactacttgtatttttaggaatacaaacactcctccatatgctcttgatgtactgtaatgttttttgtggcttactattttttcatgtccatatatctactatctatattcttttgtatgtaaaatttccaattctttttgtaagcaagatgtcatcaattagaataaaatactctttgctcatcagaattccaaagttatttcagattgtgtcttgagttttagttctttttttgatgcgtgaatccatatataactagtgggatctttgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="112629" stop="113621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112929" g_stop="113321" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113322" i_stop="113596" i_length="275">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113597" g_stop="113612" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="408" r_length="16" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E226559" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112929" e_stop="113321"/>
          <exon e_start="113597" e_stop="113612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAATGCAAAGATTGCAAGGAAACGCGTTGCAAGAGAAAGATATTGAGCCCCCTCGTTCAATTGTCGAAGCTCGAGCTATACTCTGTAGAGACACTAGCAACTGTCCAGATTCCTCCAACTACTTGTATTTTTAGGAATACAAACACTCCTCCATATGCTCTTGATGTACTGTAATGTTTTTTGTGGCTTACTATTTTTTCATGTCCATATATCTACTATCTATATTCTTTTGTATGTAAAATTTCCAATTCTTTTTGTAAGCAAGATGTCATCAATTAGAATAAAATACTCTTTGCTCATCAGAATTCCAAAGTTATTTCAGATTGTGTCTTGAGTTTTAGTTCTTTTTTTGATGCGTGAATCCATATATAACTAGTGGGATCTTTGTTAGCTTGTTGTCTGTATCTATTTCTACTACACATATTTGCTTTTTGTTTTTTAATTAAAATATTTAAAAATTATGTTAGAGATATTATAAATTATGAGAATTGCCACTTTAAAATATATGTTAAAAAAACATATAAAAAAATTGATTGATTCATAAAATTAATCTATTTGTGTCACATAAAATGGGATTAAAAAAAAGGTAACATGTAGAAAATATTGTAAATTTCAATAATTAACATTATTTGATTGACTCTTGAAATTATATTTGTGCTACATAGAAATGAGACAAAAAAA</genome_strand>
        <mrna_strand>CCCAAATGCAAAGATTGCAAGGAAACGCGTT-CAAAAGAAAGATATTGAGCCCCCTCGTTCAATTGTCGAAGCTCGAGCTATACTCTGTAGAGACACTAGCAACTGTCCAGATTCCTCCAACTACTTGTATTTTTAGGAATACAAACACTCCTCCATATGCTCTTGATGTACTGTAATGTTTTTTGTGGCTTACTATTTTTTCATGTCCATATATCTACTATCTATATTCTTTTGTATGTAAAATTTCCAATTCTTTTTGTAAGCAAGATGTCATCAATTAGAATAAAATACTCTTTGCTCATCAGAATTCCAAAGTTATTTCAGATTGTGTCTTGAGTTTTAGTTCTTTTTTTGATGCGTGAATCCATATATAACTAGTGGGATCTTTGTTA...................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226723" ref_strand="+" ref_description="SGN-E226723 [cLEL-26-J10](-)">
      <seq>gctcgagctatactctgtagagacactagcaactgtccagattcctccaactacttgtatttttaggaatacaaacactcctccatatgctcttgatgtactgtaatgttttttgtggcttactattttttcatgtccatatatctactatctatattcttttgtatgtaaaatttccaattctttttgtaagcaagatgtcatcaattagaataaaatactctttgctcatcagaattccaaagttatttcagattgtgtcttgagttttagttctttttttgatgcgtgaatccatatataactagtgggatctttgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="112700" stop="113621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113000" g_stop="113321" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113322" i_stop="113596" i_length="275">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113597" g_stop="113612" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="338" r_length="16" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E226723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113000" e_stop="113321"/>
          <exon e_start="113597" e_stop="113612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGAGCTATACTCTGTAGAGACACTAGCAACTGTCCAGATTCCTCCAACTACTTGTATTTTTAGGAATACAAACACTCCTCCATATGCTCTTGATGTACTGTAATGTTTTTTGTGGCTTACTATTTTTTCATGTCCATATATCTACTATCTATATTCTTTTGTATGTAAAATTTCCAATTCTTTTTGTAAGCAAGATGTCATCAATTAGAATAAAATACTCTTTGCTCATCAGAATTCCAAAGTTATTTCAGATTGTGTCTTGAGTTTTAGTTCTTTTTTTGATGCGTGAATCCATATATAACTAGTGGGATCTTTGTTAGCTTGTTGTCTGTATCTATTTCTACTACACATATTTGCTTTTTGTTTTTTAATTAAAATATTTAAAAATTATGTTAGAGATATTATAAATTATGAGAATTGCCACTTTAAAATATATGTTAAAAAAACATATAAAAAAATTGATTGATTCATAAAATTAATCTATTTGTGTCACATAAAATGGGATTAAAAAAAAGGTAACATGTAGAAAATATTGTAAATTTCAATAATTAACATTATTTGATTGACTCTTGAAATTATATTTGTGCTACATAGAAATGAGACAAAAAAA</genome_strand>
        <mrna_strand>GCTCGAGCTATACTCTGTAGAGACACTAGCAACTGTCCAGATTCCTCCAACTACTTGTATTTTTAGGAATACAAACACTCCTCCATATGCTCTTGATGTACTGTAATGTTTTTTGTGGCTTACTATTTTTTCATGTCCATATATCTACTATCTATATTCTTTTGTATGTAAAATTTCCAATTCTTTTTGTAAGCAAGATGTCATCAATTAGAATAAAATACTCTTTGCTCATCAGAATTCCAAAGTTATTTCAGATTGTGTCTTGAGTTTTAGTTCTTTTTTTGATGCGTGAATCCATATATAACTAGTGGGATCTTTGTTA...................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396155" ref_strand="+" ref_description="SGN-E396155 [TUS-39-D16]">
      <seq>cttagtacatcatctacagatctacttagctttctttctgaggtcagtgattttggttttgaaaaacttgtgagtgtattattatttttgaaatagaaaaaaaatgcatgtttacagcaaattctcttttttttttttgagaacagattatttttgtttaacaagaatgaacttggtcctgtaaggttgtgatgaaattgtgttttctactttttataatccttaattaatgttttattcttaggtatattggtccaagtctctaattggtatagtagttttctagatgtttggaggggttatctttggttttcatgactatctagataactaatttagtagtgttaaagttttttttgtagatattttcctttgtttcatgaggtttgtttcttattcacgagtgtgtatcaatatggctgaagcagaacaaggcttgctttgaagctcgcgtttctagaatgaagagtagatgtttccgaaaattgtactttgggtgtaaaagtgtagctcaatagatagtttgaaccagtatatggatttcgaagaagagtgttgtaggctgctttctgttctattctgttattgtttctcttttttgtaccatcttggtatctctctttaaatacataccttttaaaaaaaagtgtgtgtatatctatatgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="114208" stop="115476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114508" g_stop="115176" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E396155" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114508" e_stop="115176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTACATCATCTACAGATCTACTTAGCTTTCTTTCTGAGGTCAGTGATTTTGGTTTTGAAAAACTTGTGAGTGTATTATTATTTTTGAAATAGAAAAAAAATGCATGTTTACAGCAAATTCTC-TTTTTTTTTTTGAGAACAGATTATTTTTGTTTAACAAGAATGAACTTGGTCCTGTAAGGTTGTGATGAAATTGTGTTTTCTACTTTTTATAATCCTTAATTAATGTTTTATTCTTAGGTATATTGGTCCAAGTCTCTAATTGGTATAGTAGTTTTCTAGATGTTTGGAGGGGTTATCTTTGGTTTTCATGACTATCTAGATAACTAATTTAGTAGTGTTAAAGTTTTTTTTGTAGATATTTTCCTTTGTTTCATGAGGTTTGTTTCTTATTCACGAGTGTGTATCAATATGGCTGAAGCAGAACAAGGCTTGCTTTGAAGCTCGCGTTTCTAGAATGAAGAGTAGATGTTTCCGAAAATTGTACTTTGGGTGTAAAAGTGTAGCTCAATAGATAGTTTGAACCAGTATATGGATTTCGAAGAAGAGTGTTGTAGGCTGCTTTCTGTTCTATTCTGTTATTGTTTCTCTTTTTTGTACCATCTTGGTATCTCTCTTTAAAATACATACCTTTTAAAAAAAAGTGTGTGTATATCTATATGTATA</genome_strand>
        <mrna_strand>CTTAGTACATCATCTACAGATCTACTTAGCTTTCTTTCTGAGGTCAGTGATTTTGGTTTTGAAAAACTTGTGAGTGTATTATTATTTTTGAAATAGAAAAAAAATGCATGTTTACAGCAAATTCTCTTTTTTTTTTTTGAGAACAGATTATTTTTGTTTAACAAGAATGAACTTGGTCCTGTAAGGTTGTGATGAAATTGTGTTTTCTACTTTTTATAATCCTTAATTAATGTTTTATTCTTAGGTATATTGGTCCAAGTCTCTAATTGGTATAGTAGTTTTCTAGATGTTTGGAGGGGTTATCTTTGGTTTTCATGACTATCTAGATAACTAATTTAGTAGTGTTAAAGTTTTTTTTGTAGATATTTTCCTTTGTTTCATGAGGTTTGTTTCTTATTCACGAGTGTGTATCAATATGGCTGAAGCAGAACAAGGCTTGCTTTGAAGCTCGCGTTTCTAGAATGAAGAGTAGATGTTTCCGAAAATTGTACTTTGGGTGTAAAAGTGTAGCTCAATAGATAGTTTGAACCAGTATATGGATTTCGAAGAAGAGTGTTGTAGGCTGCTTTCTGTTCTATTCTGTTATTGTTTCTCTTTTTTGTACCATCTTGGTATCTCTCTTT-AAATACATACCTTTTAAAAAAAAGTGTGTGTATATCTATATGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396162" ref_strand="+" ref_description="SGN-E396162 [TUS-40-C15]">
      <seq>cttagtacatcatctacagatctacttagctttctttctgaggtcagtgattttggttttgaaaaacttgtgagtgtattattatttttgaaatagaaaaaaaatgcatgtttacagcaaattctcttttttttttttgagaacagattatttttgtttaacaagaatgaacttggtcctgtaaggttgtgatgaaattgtgttttctactttttataatccttaattaatgttttattcttaggtatattggtccaagtctctaattggtatagtagttttctagatgtttggaggggttatctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="114208" stop="115115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114508" g_stop="114815" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E396162" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114508" e_stop="114815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTACATCATCTACAGATCTACTTAGCTTTCTTTCTGAGGTCAGTGATTTTGGTTTTGAAAAACTTGTGAGTGTATTATTATTTTTGAAATAGAAAAAAAATGCATGTTTACAGCAAATTCTC-TTTTTTTTTTTGAGAACAGATTATTTTTGTTTAACAAGAATGAACTTGGTCCTGTAAGGTTGTGATGAAATTGTGTTTTCTACTTTTTATAATCCTTAATTAATGTTTTATTCTTAGGTATATTGGTCCAAGTCTCTAATTGGTATAGTAGTTTTCTAGATGTTTGGAGGGGTTATCTTTGG</genome_strand>
        <mrna_strand>CTTAGTACATCATCTACAGATCTACTTAGCTTTCTTTCTGAGGTCAGTGATTTTGGTTTTGAAAAACTTGTGAGTGTATTATTATTTTTGAAATAGAAAAAAAATGCATGTTTACAGCAAATTCTCTTTTTTTTTTTTGAGAACAGATTATTTTTGTTTAACAAGAATGAACTTGGTCCTGTAAGGTTGTGATGAAATTGTGTTTTCTACTTTTTATAATCCTTAATTAATGTTTTATTCTTAGGTATATTGGTCCAAGTCTCTAATTGGTATAGTAGTTTTCTAGATGTTTGGAGGGGTTATCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312866" ref_strand="+" ref_description="SGN-E312866 [cTOA-8-O4]">
      <seq>ttagtacatcatctacagatctacttagctttctttctgaggtcagtgattttggttttgaaaaacttgtgagtgtattattatttttgaaatagaaaaaaaatgcatgtttacagcaaattctcttttttttttttgagaacagattatttttgtttaacaagaatgaacttggtcctgtaaggttgtgatgaaattgtgttttctactttttataatccttaattaatgttttattcttaggtatattggtccaagtctctaattggtatagtagttttctagatgtttggaggggttatctttggttttcatgactatctagataactaatttagtagtgttaaagttttttttgtagatattttcctttgtttcatgaggtttgtttcttattcacgagtgtgtatcaatatggctgaagcagaacaaggcttgctttgaagctcgcgtttctagaatgaagagtagatgtttccgaaaattgtactttgggtgtaaaagtgtagctcaatagatagtttgaaccagtatatggatttcgaagaagagtgttgtaggctgctttctgttctattctgttattggttctcttttttgtaccatcttggtatctctctttaaaatacataccttttaaaaaaaagtggtgtatatctatatgtatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="114209" stop="115480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114509" g_stop="115180" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E312866" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114509" e_stop="115180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTACATCATCTACAGATCTACTTAGCTTTCTTTCTGAGGTCAGTGATTTTGGTTTTGAAAAACTTGTGAGTGTATTATTATTTTTGAAATAGAAAAAAAATGCATGTTTACAGCAAATTCTC-TTTTTTTTTTTGAGAACAGATTATTTTTGTTTAACAAGAATGAACTTGGTCCTGTAAGGTTGTGATGAAATTGTGTTTTCTACTTTTTATAATCCTTAATTAATGTTTTATTCTTAGGTATATTGGTCCAAGTCTCTAATTGGTATAGTAGTTTTCTAGATGTTTGGAGGGGTTATCTTTGGTTTTCATGACTATCTAGATAACTAATTTAGTAGTGTTAAAGTTTTTTTTGTAGATATTTTCCTTTGTTTCATGAGGTTTGTTTCTTATTCACGAGTGTGTATCAATATGGCTGAAGCAGAACAAGGCTTGCTTTGAAGCTCGCGTTTCTAGAATGAAGAGTAGATGTTTCCGAAAATTGTACTTTGGGTGTAAAAGTGTAGCTCAATAGATAGTTTGAACCAGTATATGGATTTCGAAGAAGAGTGTTGTAGGCTGCTTTCTGTTCTATTCTGTTATTGTTTCTCTTTTTTGTACCATCTTGGTATCTCTCTTTAAAATACATACCTTTTAAAAAAAAGTGTGTGTATATCTATATGTATATATA</genome_strand>
        <mrna_strand>TTAGTACATCATCTACAGATCTACTTAGCTTTCTTTCTGAGGTCAGTGATTTTGGTTTTGAAAAACTTGTGAGTGTATTATTATTTTTGAAATAGAAAAAAAATGCATGTTTACAGCAAATTCTCTTTTTTTTTTTTGAGAACAGATTATTTTTGTTTAACAAGAATGAACTTGGTCCTGTAAGGTTGTGATGAAATTGTGTTTTCTACTTTTTATAATCCTTAATTAATGTTTTATTCTTAGGTATATTGGTCCAAGTCTCTAATTGGTATAGTAGTTTTCTAGATGTTTGGAGGGGTTATCTTTGGTTTTCATGACTATCTAGATAACTAATTTAGTAGTGTTAAAGTTTTTTTTGTAGATATTTTCCTTTGTTTCATGAGGTTTGTTTCTTATTCACGAGTGTGTATCAATATGGCTGAAGCAGAACAAGGCTTGCTTTGAAGCTCGCGTTTCTAGAATGAAGAGTAGATGTTTCCGAAAATTGTACTTTGGGTGTAAAAGTGTAGCTCAATAGATAGTTTGAACCAGTATATGGATTTCGAAGAAGAGTGTTGTAGGCTGCTTTCTGTTCTATTCTGTTATTGGTTCTCTTTTTTGTACCATCTTGGTATCTCTCTTTAAAATACATACCTTTTAAAAAAAAGTG-GTGTATATCTATATGTATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312754" ref_strand="+" ref_description="SGN-E312754 [cTOA-8-O16]">
      <seq>ttagtacattatctacagatctacttagctttctttctgaggtcagtgattttggttttgaaaaacttgtgagtgtattattatttttgaaatagaaaaaaaatgcatgtttacagcaaattctcttttttttttttgagaacagattatttttgtttaacaagaatgaacttggtcctgtaaggttgtgatgaaattgtgttttctactttttataatccttaattaatgttttattcttaggtatattggtccaagtctctaattggtatagtagttttctagatgtttggaggggttatctttggttttcatgactatctagataactaatttagtagtgttaaagttttttttgtagatattttcctttgtttcatgaggtttgtttcttattcacgagtgtgtatcaatatggctgaagcagaacaaggcttgctttgaagctcgcgtttctagaatgaagagtagatgtttccgaaaattgtactttgggtgtaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="114209" stop="115311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114509" g_stop="115011" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E312754" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114509" e_stop="115011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTACATCATCTACAGATCTACTTAGCTTTCTTTCTGAGGTCAGTGATTTTGGTTTTGAAAAACTTGTGAGTGTATTATTATTTTTGAAATAGAAAAAAAATGCATGTTTACAGCAAATTCTC-TTTTTTTTTTTGAGAACAGATTATTTTTGTTTAACAAGAATGAACTTGGTCCTGTAAGGTTGTGATGAAATTGTGTTTTCTACTTTTTATAATCCTTAATTAATGTTTTATTCTTAGGTATATTGGTCCAAGTCTCTAATTGGTATAGTAGTTTTCTAGATGTTTGGAGGGGTTATCTTTGGTTTTCATGACTATCTAGATAACTAATTTAGTAGTGTTAAAGTTTTTTTTGTAGATATTTTCCTTTGTTTCATGAGGTTTGTTTCTTATTCACGAGTGTGTATCAATATGGCTGAAGCAGAACAAGGCTTGCTTTGAAGCTCGCGTTTCTAGAATGAAGAGTAGATGTTTCCGAAAATTGTACTTTGGGTGTAAAAG</genome_strand>
        <mrna_strand>TTAGTACATTATCTACAGATCTACTTAGCTTTCTTTCTGAGGTCAGTGATTTTGGTTTTGAAAAACTTGTGAGTGTATTATTATTTTTGAAATAGAAAAAAAATGCATGTTTACAGCAAATTCTCTTTTTTTTTTTTGAGAACAGATTATTTTTGTTTAACAAGAATGAACTTGGTCCTGTAAGGTTGTGATGAAATTGTGTTTTCTACTTTTTATAATCCTTAATTAATGTTTTATTCTTAGGTATATTGGTCCAAGTCTCTAATTGGTATAGTAGTTTTCTAGATGTTTGGAGGGGTTATCTTTGGTTTTCATGACTATCTAGATAACTAATTTAGTAGTGTTAAAGTTTTTTTTGTAGATATTTTCCTTTGTTTCATGAGGTTTGTTTCTTATTCACGAGTGTGTATCAATATGGCTGAAGCAGAACAAGGCTTGCTTTGAAGCTCGCGTTTCTAGAATGAAGAGTAGATGTTTCCGAAAATTGTACTTTGGGTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390428" ref_strand="+" ref_description="SGN-E390428 [TUS-39-D16](-)">
      <seq>aattgatgttttcttcatgctggtagtgtaagagaatctttacacttttagtcaccgttgagatatactaatagcgacttagtttaatgtgtctgtcttgagactgtgattctttgtgcagagaaatccgtgtactgagctgctttcgtaaccaagaaatgaactttgggagactaaagaatgtggtagctgctgcagccattgaagggttggctgaagcaagggccaggatatttggtcatgtgcttaatccaaccgggcagagatcatcccacaaggttttacgcaagaagctcatcggtgagaaggtttcacaatggtacccacatgatatcatgaaagatgatcctcttgtgatggcacgtcaagagcaagagcgcctgagcaagcttgaaatgcttagacgtcgtggaaagggacctcctaagaagggtcaaggcaagcaggctaaaaaacgtaacaaatagagatgatactttcacaatcttgcaaattggctgtttctatgggttactctgcgcgatttgatcgccttcttgtttctgatctcatagcatcttactttcaatatagttttttgttttcatgcttgtttctgacttgtaatactactgatacacatttgttagtatcaagtaaagtgaatttaggggttgattggtttggaagaacatttgtggttttattagttcgaatgaataaatagcgtatccaaactttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="116632" stop="117964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116932" g_stop="117664" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E390428" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116932" e_stop="117664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATGTTTTCTTCATGCTGGTAGTGTAAGAGAATCTTTACACTTTTAGTCACCGTTGAGATATACTAATAGCGACTTAGTTTAATGTGTCTGTCTTGAGACTGTGATTCTTTGTGCAGAGAAATCCGTGTACTGAGCTGCTTTCGTAACCAAGAAATGAACTTTGGGAGACTAAAGAATGTGGTAGCTGCTGCAGCCATTGAAGGGTTGGCTGAAGCAAGGGCCAGGATATTTGGTCATGTGCTTAATCCAACCGGGCAGAGATCATCCCACAAGGTTTTACGCAAGAAGCTCATCGGTGAGAAGGTTTCACAATGGTACCCACATGATATCATGAAAGATGATCCTCTTGTGATGGCACGTCAAGAGCAAGAGCGCCTGAGCAAGCTTGAAATGCTTAGACGTCGTGGAAAGGGACCTCCTAAGAAGGGTCAAGGCAAGCAGGCTAAAAAACGTAACAAATAGAGATGATACTTTCACAATCTTGCAAATTGGCTGTTTCTATGGGTTACTCTGCGCGATTTGATCGCCTTCTTGTTTCTGATCTCATAGCATCTTACTTTCAATATAGTTTTTTGTTTTCATGCTTGTTTCTGACTTGTAATACTACTGATACACATTTGTTAGTATCAAGTAAAGTGAATTTAGGGGTTGATTGGTTTGGAAGAACATTTGTGGTTTTATTAGTTCGAATGAATAAATAGCGTATCCAAACTTTATTAACTACGAAA</genome_strand>
        <mrna_strand>AATTGATGTTTTCTTCATGCTGGTAGTGTAAGAGAATCTTTACACTTTTAGTCACCGTTGAGATATACTAATAGCGACTTAGTTTAATGTGTCTGTCTTGAGACTGTGATTCTTTGTGCAGAGAAATCCGTGTACTGAGCTGCTTTCGTAACCAAGAAATGAACTTTGGGAGACTAAAGAATGTGGTAGCTGCTGCAGCCATTGAAGGGTTGGCTGAAGCAAGGGCCAGGATATTTGGTCATGTGCTTAATCCAACCGGGCAGAGATCATCCCACAAGGTTTTACGCAAGAAGCTCATCGGTGAGAAGGTTTCACAATGGTACCCACATGATATCATGAAAGATGATCCTCTTGTGATGGCACGTCAAGAGCAAGAGCGCCTGAGCAAGCTTGAAATGCTTAGACGTCGTGGAAAGGGACCTCCTAAGAAGGGTCAAGGCAAGCAGGCTAAAAAACGTAACAAATAGAGATGATACTTTCACAATCTTGCAAATTGGCTGTTTCTATGGGTTACTCTGCGCGATTTGATCGCCTTCTTGTTTCTGATCTCATAGCATCTTACTTTCAATATAGTTTTTTGTTTTCATGCTTGTTTCTGACTTGTAATACTACTGATACACATTTGTTAGTATCAAGTAAAGTGAATTTAGGGGTTGATTGGTTTGGAAGAACATTTGTGGTTTTATTAGTTCGAATGAATAAATAGCGTATCCAAACTTTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390467" ref_strand="+" ref_description="SGN-E390467 [TUS-40-C15](-)">
      <seq>gtcaccgttgagatatactaatagcgacttagtttaatgtgtctgtcttgagactgtgattctttgtgcagagaaatccgtgtactgagctgctttcgtaaccaagaaatgaactttgggagactaaagaatgtggtagctgctgcagccattgaagggttggctgaagcaagggccaggatatttggtcatgtgcttaatccaaccgggcagagatcatcccacaaggttttacgcaagaagctcatcggtgagaaggtttcacaatggtacccacatgatatcatgaaagatgatcctcttgtgatggcacgtcaagagcaagagcgcctgagcaagcttgaaatgcttagacgtcgtggaaagggacctcctaagaagggtcaaggcaagcaggctaaaaaacgtaacaaatagagatgatactttcacaatcttgcaaattggctgtttctatgggttactctgcgcgatttgatcgccttcttgtttctgatctcatagcatcttactttcaatatagttttttgttttcatgcttgtttctgacttgtaatactactgatacacatttgttagtatcaagtaaagtgaatttaggggttgattggtttggaagaacatttgtggttttattagttcgaatgaataaatagcgtatccaaactttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="+" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="116682" stop="117964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116982" g_stop="117664" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="+" ref_id="SGN-E390467" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116982" e_stop="117664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACCGTTGAGATATACTAATAGCGACTTAGTTTAATGTGTCTGTCTTGAGACTGTGATTCTTTGTGCAGAGAAATCCGTGTACTGAGCTGCTTTCGTAACCAAGAAATGAACTTTGGGAGACTAAAGAATGTGGTAGCTGCTGCAGCCATTGAAGGGTTGGCTGAAGCAAGGGCCAGGATATTTGGTCATGTGCTTAATCCAACCGGGCAGAGATCATCCCACAAGGTTTTACGCAAGAAGCTCATCGGTGAGAAGGTTTCACAATGGTACCCACATGATATCATGAAAGATGATCCTCTTGTGATGGCACGTCAAGAGCAAGAGCGCCTGAGCAAGCTTGAAATGCTTAGACGTCGTGGAAAGGGACCTCCTAAGAAGGGTCAAGGCAAGCAGGCTAAAAAACGTAACAAATAGAGATGATACTTTCACAATCTTGCAAATTGGCTGTTTCTATGGGTTACTCTGCGCGATTTGATCGCCTTCTTGTTTCTGATCTCATAGCATCTTACTTTCAATATAGTTTTTTGTTTTCATGCTTGTTTCTGACTTGTAATACTACTGATACACATTTGTTAGTATCAAGTAAAGTGAATTTAGGGGTTGATTGGTTTGGAAGAACATTTGTGGTTTTATTAGTTCGAATGAATAAATAGCGTATCCAAACTTTATTAACTACGAAA</genome_strand>
        <mrna_strand>GTCACCGTTGAGATATACTAATAGCGACTTAGTTTAATGTGTCTGTCTTGAGACTGTGATTCTTTGTGCAGAGAAATCCGTGTACTGAGCTGCTTTCGTAACCAAGAAATGAACTTTGGGAGACTAAAGAATGTGGTAGCTGCTGCAGCCATTGAAGGGTTGGCTGAAGCAAGGGCCAGGATATTTGGTCATGTGCTTAATCCAACCGGGCAGAGATCATCCCACAAGGTTTTACGCAAGAAGCTCATCGGTGAGAAGGTTTCACAATGGTACCCACATGATATCATGAAAGATGATCCTCTTGTGATGGCACGTCAAGAGCAAGAGCGCCTGAGCAAGCTTGAAATGCTTAGACGTCGTGGAAAGGGACCTCCTAAGAAGGGTCAAGGCAAGCAGGCTAAAAAACGTAACAAATAGAGATGATACTTTCACAATCTTGCAAATTGGCTGTTTCTATGGGTTACTCTGCGCGATTTGATCGCCTTCTTGTTTCTGATCTCATAGCATCTTACTTTCAATATAGTTTTTTGTTTTCATGCTTGTTTCTGACTTGTAATACTACTGATACACATTTGTTAGTATCAAGTAAAGTGAATTTAGGGGTTGATTGGTTTGGAAGAACATTTGTGGTTTTATTAGTTCGAATGAATAAATAGCGTATCCAAACTTTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549142" ref_strand="+" ref_description="SGN-E549142 [TUS-67-L2](-)">
      <seq>agactaataagaagaatataactatttcttcagataattacataaattaaagtcgatacatataaatatatatggcaagattctatggtgtgggatcagatggtggcacaacacttgatgattcgagcttaataataatagtgggaatggttattatgtctgttttaatggtttctatggtcatttttgcttgtggagactcctcaaatggtgaaaaggacgatgattggtactatcatggaagcggaggagacggtggagcaggctgcggtggtggttgcgattaaatttttcttcttgaatctgctttttttttttttatcaatgtagattccagtccaagtaaaaaataatttttttttaaaaaaaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="120821" stop="84396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120521" g_stop="120138" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E549142" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120521" e_stop="120138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTAATAAGAAGAATATAACTATTTCTTCAGATAATTACATAAATTAAAGTCGATACATATAAATATATATGGCAAGATTCTATGGTGTGGGATCAGATGGTGGCACAACACTTGATGATTCGAGCTTAATAATAATAGTGGGAATGGTTATTATGTCTGTTTTAATGGTTTCTATGGTCATTTTTGCTTGTGGAGACTCCTCAAATGGTGAAAAGGACGATGATTGGTACTATCATGGAAGCGGAGGAGACGGTGGAGCAGGCTGCGGTGGTGGTTGCGATTAAATTTTTCTTCTTGAATCTGCTTTTTTTTTTTTTATCAATGTAGATTCCAGTCCAAGTAAAAAATAATTTTTTTTTAAAAAAAAGATCTATAGTAGTG</genome_strand>
        <mrna_strand>AGACTAATAAGAAGAATATAACTATTTCTTCAGATAATTACATAAATTAAAGTCGATACATATAAATATATATGGCAAGATTCTATGGTGTGGGATCAGATGGTGGCACAACACTTGATGATTCGAGCTTAATAATAATAGTGGGAATGGTTATTATGTCTGTTTTAATGGTTTCTATGGTCATTTTTGCTTGTGGAGACTCCTCAAATGGTGAAAAGGACGATGATTGGTACTATCATGGAAGCGGAGGAGACGGTGGAGCAGGCTGCGGTGGTGGTTGCGATTAAATTTTTCTTCTTGAATCTGCTTTTTTTTTTTTTATCAATGTAGATTCCAGTCCAAGTAAAAAATAATTTTTTTTTAAAAAAAA-AAAAAAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308423" ref_strand="+" ref_description="SGN-E308423 [cLEY-25-D4]">
      <seq>gactaataagaagaatataactatttcttcagataattacataaattaaagtcgatacatataaatatatatggcaagattctatggtgtgggatcagatggtggcacaacacttgatgattcgagcttaataataatagtgggaatggttattatgtctgttttaatggtttctatggtcatttttgcttgtggagactcctcaaatggtgaaaaggacgatgattggtactatcatggaagcggaggagacggtggagcaggctgcggtggtggttgcgattaaatttttcttcttgaatctgctttttttttttttatcaatgtagattccagtccaagtaaaaaataatttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="120820" stop="35588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120520" g_stop="120139" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E308423" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120520" e_stop="120139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAATAAGAAGAATATAACTATTTCTTCAGATAATTACATAAATTAAAGTCGATACATATAAATATATATGGCAAGATTCTATGGTGTGGGATCAGATGGTGGCACAACACTTGATGATTCGAGCTTAATAATAATAGTGGGAATGGTTATTATGTCTGTTTTAATGGTTTCTATGGTCATTTTTGCTTGTGGAGACTCCTCAAATGGTGAAAAGGACGATGATTGGTACTATCATGGAAGCGGAGGAGACGGTGGAGCAGGCTGCGGTGGTGGTTGCGATTAAATTTTTCTTCTTGAATCTGCTTTTTTTTTTTTTATCAATGTAGATTCCAGTCCAAGTAAAAAATAATTTTTTTTTAAAAAAAAGATCTATAGTAGT</genome_strand>
        <mrna_strand>GACTAATAAGAAGAATATAACTATTTCTTCAGATAATTACATAAATTAAAGTCGATACATATAAATATATATGGCAAGATTCTATGGTGTGGGATCAGATGGTGGCACAACACTTGATGATTCGAGCTTAATAATAATAGTGGGAATGGTTATTATGTCTGTTTTAATGGTTTCTATGGTCATTTTTGCTTGTGGAGACTCCTCAAATGGTGAAAAGGACGATGATTGGTACTATCATGGAAGCGGAGGAGACGGTGGAGCAGGCTGCGGTGGTGGTTGCGATTAAATTTTTCTTCTTGAATCTGCTTTTTTTTTTTTTATCAATGTAGATTCCAGTCCAAGTAAAAAATAATTTTTTTTTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545045" ref_strand="+" ref_description="SGN-E545045 [TUS-67-L2]">
      <seq>agactaataagaagaatataactatttcttcagataattacataaattaaagtcgatacatataaatatatatggcaagattctatggtgtgggatcagatggtggcacaacacttgatgattcgagcttaataataatagtgggaatggttattatgtctgttttaatggtttctatggtcatttttgcttgtggagactcctcaaatggtgaaaaggacgatgattggtactatcatggaagcggaggagacggtggagcaggctgcggtggtggttgcgattaaatttttcttcttgaatctgctttttttttttttatcaatgtagattccagtccaagtaaaaaataatttttttttaaaagaaaaaaggaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0018L21-Wj0Nr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0018L21.1" temp_strand="-" temp_description="C07HBa0018L21.1  AC210348.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0018L21 upload_account_name:france">
        <position start="120821" stop="119850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120521" g_stop="120151" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0018L21.1" gen_strand="-" ref_id="SGN-E545045" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0018L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120521" e_stop="120151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTAATAAGAAGAATATAACTATTTCTTCAGATAATTACATAAATTAAAGTCGATACATATAAATATATATGGCAAGATTCTATGGTGTGGGATCAGATGGTGGCACAACACTTGATGATTCGAGCTTAATAATAATAGTGGGAATGGTTATTATGTCTGTTTTAATGGTTTCTATGGTCATTTTTGCTTGTGGAGACTCCTCAAATGGTGAAAAGGACGATGATTGGTACTATCATGGAAGCGGAGGAGACGGTGGAGCAGGCTGCGGTGGTGGTTGCGATTAAATTTTTCTTCTTGAATCTGCTTTTTTTTTTTTTATCAATGTAGATTCCAGTCCAAGTAAAAAATAATTTTTTTTTAAAAAAAAG</genome_strand>
        <mrna_strand>AGACTAATAAGAAGAATATAACTATTTCTTCAGATAATTACATAAATTAAAGTCGATACATATAAATATATATGGCAAGATTCTATGGTGTGGGATCAGATGGTGGCACAACACTTGATGATTCGAGCTTAATAATAATAGTGGGAATGGTTATTATGTCTGTTTTAATGGTTTCTATGGTCATTTTTGCTTGTGGAGACTCCTCAAATGGTGAAAAGGACGATGATTGGTACTATCATGGAAGCGGAGGAGACGGTGGAGCAGGCTGCGGTGGTGGTTGCGATTAAATTTTTCTTCTTGAATCTGCTTTTTTTTTTTTTATCAATGTAGATTCCAGTCCAAGTAAAAAATAATTTTTTTTTAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>139</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2635" PGL_stop="5910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2635" e_stop="2699"/>
            <exon e_start="2869" e_stop="2968"/>
            <exon e_start="3066" e_stop="3107"/>
            <exon e_start="3462" e_stop="3503"/>
            <exon e_start="3869" e_stop="4058"/>
            <exon e_start="5648" e_stop="5910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2635" e_stop="2699" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2700" i_stop="2868" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2869" e_stop="2968" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="2969" i_stop="3065" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3066" e_stop="3107" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3108" i_stop="3461" i_length="354"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3462" e_stop="3503" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3504" i_stop="3868" i_length="365"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3869" e_stop="4058" e_length="190"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4059" i_stop="5647" i_length="1589"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="5648" e_stop="5910" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2635" stop="2699"/>
              <exon start="2869" stop="2968"/>
              <exon start="3066" stop="3107"/>
              <exon start="3462" stop="3503"/>
              <exon start="3869" stop="4058"/>
              <exon start="5648" stop="5910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2687" stop="2699"/>
              <exon start="2869" stop="2968"/>
              <exon start="3066" stop="3107"/>
              <exon start="3462" stop="3503"/>
              <exon start="3869" stop="4058"/>
              <exon start="5648" stop="5910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTACTACCAGCAAGAAGCATCCAAACTGCGACGACAAATTCGAGATATACAGACTTATAACAG : GCAAATAGTTGGAGAGGCATTGGGCAGTTTAAGCCCTAGAGACCTCAAGAATTTGGAAGGGAAACTTGAAAAGGCCATTGGTAGAGTCCGTTCCAAAAAG : AATGAATTGCTTTTCTCAGAAATAGAGCTCATGCAAAAGAGG : GAGATTGAGCTGCAGAACGCCAACATGTATCTACGCGCAAAG : ATAGCAGAGGTAGAGAGAGCACAAGAGCAAATGAACTTGATGCCTGGAGGCGGAGGCGGAGGCGGAGGCGGAGGAGGAGGAGGATCTGATCATCAATACCATCATCAGCCAAATTACGAAGATGCTCGCAATAACTTCCTGCCTGTAAATCTCCTGGAACCAAATCCTCATTACTCTCGTCGCGACAATG : CTGATAATCATGGAGCAGGTATTCTGAAATTTGGGGTCAAGGCTCTTCATCTTCAGAAAAATGTGTACTACAATTTTTAACCTATAGTGTTGTAAATCATAATCATAATTATTGCCACTGAGATTTAAACTGTTTATTTTTAAGCAATATTATTCAGTCATCTGTTAATTAAGGAATGAAAAATCTTGTTTGTTATATTATGACTACTTCTATATACTTTTACAGCCTTATATAAATAATATGCTATTGAACTATACATACAA</gDNA_template>
            <first_frame> Q  Y  Y  Q  Q  E  A  S  K  L  R  R  Q  I  R  D  I  Q  T  Y  N  R :   Q  I  V  G  E  A  L  G  S  L  S  P  R  D  L  K  N  L  E  G  K  L  E  K  A  I  G  R  V  R  S  K  K  :  N  E  L  L  F  S  E  I  E  L  M  Q  K  R  :  E  I  E  L  Q  N  A  N  M  Y  L  R  A  K  :  I  A  E  V  E  R  A  Q  E  Q  M  N  L  M  P  G  G  G  G  G  G  G  G  G  G  G  G  G  S  D  H  Q  Y  H  H  Q  P  N  Y  E  D  A  R  N  N  F  L  P  V  N  L  L  E  P  N  P  H  Y  S  R  R  D  N   : A  D  N  H  G  A  G  I  L  K  F  G  V  K  A  L  H  L  Q  K  N  V  Y  Y  N  F  *  P  I  V  L  *  I  I  I  I  I  I  A  T  E  I  *  T  V  Y  F  *  A  I  L  F  S  H  L  L  I  K  E  *  K  I  L  F  V  I  L  *  L  L  L  Y  T  F  T  A  L  Y  K  *  Y  A  I  E  L  Y  I  Q </first_frame>
            <second_frame>  S  T  T  S  K  K  H  P  N  C  D  D  K  F  E  I  Y  R  L  I  T   : G  K  *  L  E  R  H  W  A  V  *  A  L  E  T  S  R  I  W  K  G  N  L  K  R  P  L  V  E  S  V  P  K  R :   M  N  C  F  S  Q  K  *  S  S  C  K  R  G :   R  L  S  C  R  T  P  T  C  I  Y  A  Q  R :   *  Q  R  *  R  E  H  K  S  K  *  T  *  C  L  E  A  E  A  E  A  E  A  E  E  E  E  D  L  I  I  N  T  I  I  S  Q  I  T  K  M  L  A  I  T  S  C  L  *  I  S  W  N  Q  I  L  I  T  L  V  A  T  M  :  L  I  I  M  E  Q  V  F  *  N  L  G  S  R  L  F  I  F  R  K  M  C  T  T  I  F  N  L  *  C  C  K  S  *  S  *  L  L  P  L  R  F  K  L  F  I  F  K  Q  Y  Y  S  V  I  C  *  L  R  N  E  K  S  C  L  L  Y  Y  D  Y  F  Y  I  L  L  Q  P  Y  I  N  N  M  L  L  N  Y  T  Y   </second_frame>
            <third_frame>   V  L  P  A  R  S  I  Q  T  A  T  T  N  S  R  Y  T  D  L  *  Q  :  A  N  S  W  R  G  I  G  Q  F  K  P  *  R  P  Q  E  F  G  R  E  T  *  K  G  H  W  *  S  P  F  Q  K   : E  *  I  A  F  L  R  N  R  A  H  A  K  E   : G  D  *  A  A  E  R  Q  H  V  S  T  R  K   : D  S  R  G  R  E  S  T  R  A  N  E  L  D  A  W  R  R  R  R  R  R  R  R  R  R  R  R  I  *  S  S  I  P  S  S  A  K  L  R  R  C  S  Q  *  L  P  A  C  K  S  P  G  T  K  S  S  L  L  S  S  R  Q  C :   *  *  S  W  S  R  Y  S  E  I  W  G  Q  G  S  S  S  S  E  K  C  V  L  Q  F  L  T  Y  S  V  V  N  H  N  H  N  Y  C  H  *  D  L  N  C  L  F  L  S  N  I  I  Q  S  S  V  N  *  G  M  K  N  L  V  C  Y  I  M  T  T  S  I  Y  F  Y  S  L  I  *  I  I  C  Y  *  T  I  H  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2635" stop="2699"/>
                    <exon start="2869" stop="2968"/>
                    <exon start="3066" stop="3107"/>
                    <exon start="3462" stop="3503"/>
                    <exon start="3869" stop="4058"/>
                    <exon start="5648" stop="5727"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYYQQEASKLRRQIRDIQTYNRQIVGEALGSLSPRDLKNLEGKLEKAIGRVRSKKNELLFSEIELMQKREIELQNANMYLRAKIAEVERAQEQMNLMPGGGGGGGGGGGGGSDHQYHHQPNYEDARNNFLPVNLLEPNPHYSRRDNADNHGAGILKFGVKALHLQKNVYYNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2638" e_stop="2699"/>
            <exon e_start="2869" e_stop="2968"/>
            <exon e_start="3066" e_stop="3107"/>
            <exon e_start="3462" e_stop="3503"/>
            <exon e_start="3869" e_stop="4083"/>
            <exon e_start="5648" e_stop="5858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="0.984"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="2638" e_stop="2699" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2700" i_stop="2868" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2869" e_stop="2968" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="2969" i_stop="3065" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3066" e_stop="3107" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3108" i_stop="3461" i_length="354"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3462" e_stop="3503" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3504" i_stop="3868" i_length="365"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="3869" e_stop="4083" e_length="215"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4084" i_stop="5647" i_length="1564"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5648" e_stop="5858" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2638" stop="2699"/>
              <exon start="2869" stop="2968"/>
              <exon start="3066" stop="3107"/>
              <exon start="3462" stop="3503"/>
              <exon start="3869" stop="4083"/>
              <exon start="5648" stop="5829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578267" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4005" stop="4083"/>
              <exon start="5648" stop="5858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578115" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTACCAGCAAGAAGCATCCAAACTGCGACGACAAATTCGAGATATACAGACTTATAACAG : GCAAATAGTTGGAGAGGCATTGGGCAGTTTAAGCCCTAGAGACCTCAAGAATTTGGAAGGGAAACTTGAAAAGGCCATTGGTAGAGTCCGTTCCAAAAAG : AATGAATTGCTTTTCTCAGAAATAGAGCTCATGCAAAAGAGG : GAGATTGAGCTGCAGAACGCCAACATGTATCTACGCGCAAAG : ATAGCAGAGGTAGAGAGAGCACAAGAGCAAATGAACTTGATGCCTGGAGGCGGAGGCGGAGGCGGAGGCGGAGGAGGAGGAGGATCTGATCATCAATACCATCATCAGCCAAATTACGAAGATGCTCGCAATAACTTCCTGCCTGTAAATCTCCTGGAACCAAATCCTCATTACTCTCGTCGCGACAATGGTGACCAAACTCCTCTCCAGCTTGT : CTGATAATCATGGAGCAGGTATTCTGAAATTTGGGGTCAAGGCTCTTCATCTTCAGAAAAATGTGTACTACAATTTTTAACCTATAGTGTTGTAAATCATAATCATAATTATTGCCACTGAGATTTAAACTGTTTATTTTTAAGCAATATTATTCAGTCATCTGTTAATTAAGGAATGAAAAATCTTGTTTGTTATATTATGACTACTTCT</gDNA_template>
            <first_frame> Y  Y  Q  Q  E  A  S  K  L  R  R  Q  I  R  D  I  Q  T  Y  N  R :   Q  I  V  G  E  A  L  G  S  L  S  P  R  D  L  K  N  L  E  G  K  L  E  K  A  I  G  R  V  R  S  K  K  :  N  E  L  L  F  S  E  I  E  L  M  Q  K  R  :  E  I  E  L  Q  N  A  N  M  Y  L  R  A  K  :  I  A  E  V  E  R  A  Q  E  Q  M  N  L  M  P  G  G  G  G  G  G  G  G  G  G  G  G  G  S  D  H  Q  Y  H  H  Q  P  N  Y  E  D  A  R  N  N  F  L  P  V  N  L  L  E  P  N  P  H  Y  S  R  R  D  N  G  D  Q  T  P  L  Q  L  V :   *  *  S  W  S  R  Y  S  E  I  W  G  Q  G  S  S  S  S  E  K  C  V  L  Q  F  L  T  Y  S  V  V  N  H  N  H  N  Y  C  H  *  D  L  N  C  L  F  L  S  N  I  I  Q  S  S  V  N  *  G  M  K  N  L  V  C  Y  I  M  T  T  S </first_frame>
            <second_frame>  T  T  S  K  K  H  P  N  C  D  D  K  F  E  I  Y  R  L  I  T   : G  K  *  L  E  R  H  W  A  V  *  A  L  E  T  S  R  I  W  K  G  N  L  K  R  P  L  V  E  S  V  P  K  R :   M  N  C  F  S  Q  K  *  S  S  C  K  R  G :   R  L  S  C  R  T  P  T  C  I  Y  A  Q  R :   *  Q  R  *  R  E  H  K  S  K  *  T  *  C  L  E  A  E  A  E  A  E  A  E  E  E  E  D  L  I  I  N  T  I  I  S  Q  I  T  K  M  L  A  I  T  S  C  L  *  I  S  W  N  Q  I  L  I  T  L  V  A  T  M  V  T  K  L  L  S  S  L   : S  D  N  H  G  A  G  I  L  K  F  G  V  K  A  L  H  L  Q  K  N  V  Y  Y  N  F  *  P  I  V  L  *  I  I  I  I  I  I  A  T  E  I  *  T  V  Y  F  *  A  I  L  F  S  H  L  L  I  K  E  *  K  I  L  F  V  I  L  *  L  L   </second_frame>
            <third_frame>   L  P  A  R  S  I  Q  T  A  T  T  N  S  R  Y  T  D  L  *  Q  :  A  N  S  W  R  G  I  G  Q  F  K  P  *  R  P  Q  E  F  G  R  E  T  *  K  G  H  W  *  S  P  F  Q  K   : E  *  I  A  F  L  R  N  R  A  H  A  K  E   : G  D  *  A  A  E  R  Q  H  V  S  T  R  K   : D  S  R  G  R  E  S  T  R  A  N  E  L  D  A  W  R  R  R  R  R  R  R  R  R  R  R  R  I  *  S  S  I  P  S  S  A  K  L  R  R  C  S  Q  *  L  P  A  C  K  S  P  G  T  K  S  S  L  L  S  S  R  Q  W  *  P  N  S  S  P  A  C  :  L  I  I  M  E  Q  V  F  *  N  L  G  S  R  L  F  I  F  R  K  M  C  T  T  I  F  N  L  *  C  C  K  S  *  S  *  L  L  P  L  R  F  K  L  F  I  F  K  Q  Y  Y  S  V  I  C  *  L  R  N  E  K  S  C  L  L  Y  Y  D  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2638" stop="2699"/>
                    <exon start="2869" stop="2968"/>
                    <exon start="3066" stop="3107"/>
                    <exon start="3462" stop="3503"/>
                    <exon start="3869" stop="4083"/>
                    <exon start="5648" stop="5651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYQQEASKLRRQIRDIQTYNRQIVGEALGSLSPRDLKNLEGKLEKAIGRVRSKKNELLFSEIELMQKREIELQNANMYLRAKIAEVERAQEQMNLMPGGGGGGGGGGGGGSDHQYHHQPNYEDARNNFLPVNLLEPNPHYSRRDNGDQTPLQLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12158" PGL_stop="6189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12158" e_stop="12136"/>
            <exon e_start="10614" e_stop="10450"/>
            <exon e_start="8568" e_stop="7987"/>
            <exon e_start="7883" e_stop="7581"/>
            <exon e_start="7062" e_stop="6189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.731" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12158" e_stop="12136" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.942">
            <gDNA_intron_boundary i_start="12135" i_stop="10615" i_length="1521"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10614" e_stop="10450" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10449" i_stop="8569" i_length="1881"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8568" e_stop="7987" e_length="582"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="7986" i_stop="7884" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7883" e_stop="7581" e_length="303"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.731">
            <gDNA_intron_boundary i_start="7580" i_stop="7063" i_length="518"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="7062" e_stop="6189" e_length="874"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12158" stop="12136"/>
              <exon start="10614" stop="10450"/>
              <exon start="8568" stop="8194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10495" stop="10450"/>
              <exon start="8568" stop="7987"/>
              <exon start="7883" stop="7816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8135" stop="7987"/>
              <exon start="7883" stop="7581"/>
              <exon start="7062" stop="6849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8102" stop="7987"/>
              <exon start="7883" stop="7581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7760" stop="7581"/>
              <exon start="7062" stop="6497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6879" stop="6364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6658" stop="6189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355290" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGGCGGGAGTGACTCAACTCTG : ATCAGAGAAGAGTTGATGCGCGCATTGTTGGAGGCAACAAATGATGGTGACAATGGAAAAGAGAGGAGCTCAACTTCATTACCATCCTCATTCAATGATCTTGTGAAGGACATGACTTCAAATGGACAAGACATCAAGGCTTTCGCTTTCAAAACTAAAGCTATG : ATAATAAAGATGGAGCAAATGGTAGAATCAGCAAGGCAAAGTGAGTCTATTTTTTGGCACTTAGCTTCTCACGGTGTACCAAAGGGCATACATTGCCTATCCCTCAAGTTAGCTGAAGAATATGCTGAAAATGCTGCTGCACGTTCTCGCTTGCCTTCACCCCAATATGTTTCCCACCTCATTGACCCTTCCTTCCATCATGTAGTTCTTTTAACGGACAATGTGCTTGCTGCGTCTGTTGTAGTTTCCTCAACCATTAAAAGCTCCAGTAACCCAGAAAGATTGGTGTTTCATATAGTTACTGATAAGAAGACATACACAGCAATGCATGCATGGTTTGCTGTAAACTCTGTTAATTCGGCTGTCTTGGAAGTAAGAGGATTGCATCAGTATGATTGGTCTCATGAAGTGAATATTGGGATTAAGGAGATGATAGAGATTCATAGATTGATCTGTAGTCACAAGCTTGACAGCATGAAAAGGGAAAATATTCCAAACAAGTATGAACATGAAAAAGATTTGCAGCATCTACGGCCTAGCTGTACATCCCTCTTGAATCATCTGCGCATCTATATCCCCGAG : CTTTTCCCAGACCTGAACAAGATTGTATTTTTGGACGATGATACTGTAGTACAGCATGATTTATCGTCTCTGTGGGAACTTGATCTCAACGGGAAAGTTGTTGGTGCAGCTTTTGACTCGAGTTGTGGAGATGACTGTTGCCCTGGAAGAAAGTACAAGGATTACTTTAATTTTACGAGTCCTATTATATCATCTAAGTTGGATTATGATCGTTGCGGATGGCTTTATGGAATGAATGTCTTTGATCTCCAGGCTTGGAGGAAGACTAACATCACTGCAACTTACCATCACTGGCTTAAACTT : AACCTGAACTCTGGTTTCGAATTGTGGAATCCTGGAGCACTTCCGCCTTCTCTAATTGCTTTTGAGGGTCATGTGCACCGGATTGATGCTTCATGGCACATTGCTGGTTTAGGTTATCGATCCATTATTGATGTCACACAATCTGCACTGGAAGATGGAGCAGTTGTACATTTCAGTGGACCAGCCAAGCCATGGCTTGAGATTGGGGCCCCTGAGATACGAAGCTTGTGGAGCCGCCATGTAAATATGTCAAGTGAATTCATTAGGAAATGTGGAATCATGGAGTGAACAATTAAGGGGACAAAGTCTCACTCTCAACGTGAAATGTATCAGAATTTAGCCTCGATATATATTCTGAGTTGGAGGGAAGAAGGTACAGCCTTCAGTCTCCAATCAGACCACACAGTAGTCTCCCTGTATAGACGAGAAGCTAGCATGCCATATACTACTCAGATTAGATACTGTTTGACAATCTTCGAGATGCAATAGGTTTATATAGGTATAGGTATTGTAAAAGTAATTTTCCACGTATGTTTCCTTAAATATATATATATATATATATATAACAATACCTTAGTTTTACTCTTTGAATACTCTATTCTTCTCTATATTGAGACCATATGTAGCTTAATTTCATCTATGGTTATGAAAAATAATGATATCATGGGTAGATGATCGTCAACAACTCAAGACAGAAAACGCTTCTAATGAAGGTCAAGTGCAATCTGATTTGGTTATTCCTTTTCAATATCTTGTGTGTTTATAGGAACTTATTCCGAAATTTCTACTGAATGTAAGCTTATTTCTTCTTCTTCTTGTAGGATGAACTAAATCAATGCTCTAAAAATATACATAATACTGTTTTTTAGTTTTG</gDNA_template>
            <first_frame> S  A  G  V  T  Q  L  * :   S  E  K  S  *  C  A  H  C  W  R  Q  Q  M  M  V  T  M  E  K  R  G  A  Q  L  H  Y  H  P  H  S  M  I  L  *  R  T  *  L  Q  M  D  K  T  S  R  L  S  L  S  K  L  K  L  * :   *  *  R  W  S  K  W  *  N  Q  Q  G  K  V  S  L  F  F  G  T  *  L  L  T  V  Y  Q  R  A  Y  I  A  Y  P  S  S  *  L  K  N  M  L  K  M  L  L  H  V  L  A  C  L  H  P  N  M  F  P  T  S  L  T  L  P  S  I  M  *  F  F  *  R  T  M  C  L  L  R  L  L  *  F  P  Q  P  L  K  A  P  V  T  Q  K  D  W  C  F  I  *  L  L  I  R  R  H  T  Q  Q  C  M  H  G  L  L  *  T  L  L  I  R  L  S  W  K  *  E  D  C  I  S  M  I  G  L  M  K  *  I  L  G  L  R  R  *  *  R  F  I  D  *  S  V  V  T  S  L  T  A  *  K  G  K  I  F  Q  T  S  M  N  M  K  K  I  C  S  I  Y  G  L  A  V  H  P  S  *  I  I  C  A  S  I  S  P  S :   F  S  Q  T  *  T  R  L  Y  F  W  T  M  I  L  *  Y  S  M  I  Y  R  L  C  G  N  L  I  S  T  G  K  L  L  V  Q  L  L  T  R  V  V  E  M  T  V  A  L  E  E  S  T  R  I  T  L  I  L  R  V  L  L  Y  H  L  S  W  I  M  I  V  A  D  G  F  M  E  *  M  S  L  I  S  R  L  G  G  R  L  T  S  L  Q  L  T  I  T  G  L  N  L :   T  *  T  L  V  S  N  C  G  I  L  E  H  F  R  L  L  *  L  L  L  R  V  M  C  T  G  L  M  L  H  G  T  L  L  V  *  V  I  D  P  L  L  M  S  H  N  L  H  W  K  M  E  Q  L  Y  I  S  V  D  Q  P  S  H  G  L  R  L  G  P  L  R  Y  E  A  C  G  A  A  M  *  I  C  Q  V  N  S  L  G  N  V  E  S  W  S  E  Q  L  R  G  Q  S  L  T  L  N  V  K  C  I  R  I  *  P  R  Y  I  F  *  V  G  G  K  K  V  Q  P  S  V  S  N  Q  T  T  Q  *  S  P  C  I  D  E  K  L  A  C  H  I  L  L  R  L  D  T  V  *  Q  S  S  R  C  N  R  F  I  *  V  *  V  L  *  K  *  F  S  T  Y  V  S  L  N  I  Y  I  Y  I  Y  I  T  I  P  *  F  Y  S  L  N  T  L  F  F  S  I  L  R  P  Y  V  A  *  F  H  L  W  L  *  K  I  M  I  S  W  V  D  D  R  Q  Q  L  K  T  E  N  A  S  N  E  G  Q  V  Q  S  D  L  V  I  P  F  Q  Y  L  V  C  L  *  E  L  I  P  K  F  L  L  N  V  S  L  F  L  L  L  L  V  G  *  T  K  S  M  L  *  K  Y  T  *  Y  C  F  L  V  L </first_frame>
            <second_frame>  R  R  E  *  L  N  S   : D  Q  R  R  V  D  A  R  I  V  G  G  N  K  *  W  *  Q  W  K  R  E  E  L  N  F  I  T  I  L  I  Q  *  S  C  E  G  H  D  F  K  W  T  R  H  Q  G  F  R  F  Q  N  *  S  Y   : D  N  K  D  G  A  N  G  R  I  S  K  A  K  *  V  Y  F  L  A  L  S  F  S  R  C  T  K  G  H  T  L  P  I  P  Q  V  S  *  R  I  C  *  K  C  C  C  T  F  S  L  A  F  T  P  I  C  F  P  P  H  *  P  F  L  P  S  C  S  S  F  N  G  Q  C  A  C  C  V  C  C  S  F  L  N  H  *  K  L  Q  *  P  R  K  I  G  V  S  Y  S  Y  *  *  E  D  I  H  S  N  A  C  M  V  C  C  K  L  C  *  F  G  C  L  G  S  K  R  I  A  S  V  *  L  V  S  *  S  E  Y  W  D  *  G  D  D  R  D  S  *  I  D  L  *  S  Q  A  *  Q  H  E  K  G  K  Y  S  K  Q  V  *  T  *  K  R  F  A  A  S  T  A  *  L  Y  I  P  L  E  S  S  A  H  L  Y  P  R   : A  F  P  R  P  E  Q  D  C  I  F  G  R  *  Y  C  S  T  A  *  F  I  V  S  V  G  T  *  S  Q  R  E  S  C  W  C  S  F  *  L  E  L  W  R  *  L  L  P  W  K  K  V  Q  G  L  L  *  F  Y  E  S  Y  Y  I  I  *  V  G  L  *  S  L  R  M  A  L  W  N  E  C  L  *  S  P  G  L  E  E  D  *  H  H  C  N  L  P  S  L  A  *  T   : *  P  E  L  W  F  R  I  V  E  S  W  S  T  S  A  F  S  N  C  F  *  G  S  C  A  P  D  *  C  F  M  A  H  C  W  F  R  L  S  I  H  Y  *  C  H  T  I  C  T  G  R  W  S  S  C  T  F  Q  W  T  S  Q  A  M  A  *  D  W  G  P  *  D  T  K  L  V  E  P  P  C  K  Y  V  K  *  I  H  *  E  M  W  N  H  G  V  N  N  *  G  D  K  V  S  L  S  T  *  N  V  S  E  F  S  L  D  I  Y  S  E  L  E  G  R  R  Y  S  L  Q  S  P  I  R  P  H  S  S  L  P  V  *  T  R  S  *  H  A  I  Y  Y  S  D  *  I  L  F  D  N  L  R  D  A  I  G  L  Y  R  Y  R  Y  C  K  S  N  F  P  R  M  F  P  *  I  Y  I  Y  I  Y  I  *  Q  Y  L  S  F  T  L  *  I  L  Y  S  S  L  Y  *  D  H  M  *  L  N  F  I  Y  G  Y  E  K  *  *  Y  H  G  *  M  I  V  N  N  S  R  Q  K  T  L  L  M  K  V  K  C  N  L  I  W  L  F  L  F  N  I  L  C  V  Y  R  N  L  F  R  N  F  Y  *  M  *  A  Y  F  F  F  F  L  *  D  E  L  N  Q  C  S  K  N  I  H  N  T  V  F  *  F   </second_frame>
            <third_frame>   G  G  S  D  S  T  L  :  I  R  E  E  L  M  R  A  L  L  E  A  T  N  D  G  D  N  G  K  E  R  S  S  T  S  L  P  S  S  F  N  D  L  V  K  D  M  T  S  N  G  Q  D  I  K  A  F  A  F  K  T  K  A  M  :  I  I  K  M  E  Q  M  V  E  S  A  R  Q  S  E  S  I  F  W  H  L  A  S  H  G  V  P  K  G  I  H  C  L  S  L  K  L  A  E  E  Y  A  E  N  A  A  A  R  S  R  L  P  S  P  Q  Y  V  S  H  L  I  D  P  S  F  H  H  V  V  L  L  T  D  N  V  L  A  A  S  V  V  V  S  S  T  I  K  S  S  S  N  P  E  R  L  V  F  H  I  V  T  D  K  K  T  Y  T  A  M  H  A  W  F  A  V  N  S  V  N  S  A  V  L  E  V  R  G  L  H  Q  Y  D  W  S  H  E  V  N  I  G  I  K  E  M  I  E  I  H  R  L  I  C  S  H  K  L  D  S  M  K  R  E  N  I  P  N  K  Y  E  H  E  K  D  L  Q  H  L  R  P  S  C  T  S  L  L  N  H  L  R  I  Y  I  P  E  :  L  F  P  D  L  N  K  I  V  F  L  D  D  D  T  V  V  Q  H  D  L  S  S  L  W  E  L  D  L  N  G  K  V  V  G  A  A  F  D  S  S  C  G  D  D  C  C  P  G  R  K  Y  K  D  Y  F  N  F  T  S  P  I  I  S  S  K  L  D  Y  D  R  C  G  W  L  Y  G  M  N  V  F  D  L  Q  A  W  R  K  T  N  I  T  A  T  Y  H  H  W  L  K  L  :  N  L  N  S  G  F  E  L  W  N  P  G  A  L  P  P  S  L  I  A  F  E  G  H  V  H  R  I  D  A  S  W  H  I  A  G  L  G  Y  R  S  I  I  D  V  T  Q  S  A  L  E  D  G  A  V  V  H  F  S  G  P  A  K  P  W  L  E  I  G  A  P  E  I  R  S  L  W  S  R  H  V  N  M  S  S  E  F  I  R  K  C  G  I  M  E  *  T  I  K  G  T  K  S  H  S  Q  R  E  M  Y  Q  N  L  A  S  I  Y  I  L  S  W  R  E  E  G  T  A  F  S  L  Q  S  D  H  T  V  V  S  L  Y  R  R  E  A  S  M  P  Y  T  T  Q  I  R  Y  C  L  T  I  F  E  M  Q  *  V  Y  I  G  I  G  I  V  K  V  I  F  H  V  C  F  L  K  Y  I  Y  I  Y  I  Y  N  N  T  L  V  L  L  F  E  Y  S  I  L  L  Y  I  E  T  I  C  S  L  I  S  S  M  V  M  K  N  N  D  I  M  G  R  *  S  S  T  T  Q  D  R  K  R  F  *  *  R  S  S  A  I  *  F  G  Y  S  F  S  I  S  C  V  F  I  G  T  Y  S  E  I  S  T  E  C  K  L  I  S  S  S  S  C  R  M  N  *  I  N  A  L  K  I  Y  I  I  L  F  F  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12156" stop="12136"/>
                    <exon start="10614" stop="10450"/>
                    <exon start="8568" stop="7987"/>
                    <exon start="7883" stop="7581"/>
                    <exon start="7062" stop="6775"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1356</number_coding_nucleotides>
                  <number_encoded_amino_acids>452</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGSDSTLIREELMRALLEATNDGDNGKERSSTSLPSSFNDLVKDMTSNGQDIKAFAFKTKAMIIKMEQMVESARQSESIFWHLASHGVPKGIHCLSLKLAEEYAENAAARSRLPSPQYVSHLIDPSFHHVVLLTDNVLAASVVVSSTIKSSSNPERLVFHIVTDKKTYTAMHAWFAVNSVNSAVLEVRGLHQYDWSHEVNIGIKEMIEIHRLICSHKLDSMKRENIPNKYEHEKDLQHLRPSCTSLLNHLRIYIPELFPDLNKIVFLDDDTVVQHDLSSLWELDLNGKVVGAAFDSSCGDDCCPGRKYKDYFNFTSPIISSKLDYDRCGWLYGMNVFDLQAWRKTNITATYHHWLKLNLNSGFELWNPGALPPSLIAFEGHVHRIDASWHIAGLGYRSIIDVTQSALEDGAVVHFSGPAKPWLEIGAPEIRSLWSRHVNMSSEFIRKCGIME*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6774" stop="6574"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIKGTKSHSQREMYQNLASIYILSWREEGTAFSLQSDHTVVSLYRREASMPYTTQIRYCLTIFEMQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12158" e_stop="12136"/>
            <exon e_start="10614" e_stop="10450"/>
            <exon e_start="8568" e_stop="7987"/>
            <exon e_start="7883" e_stop="7581"/>
            <exon e_start="7062" e_stop="6492"/>
            <exon e_start="6391" e_stop="6368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.731" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.971" e_score="0.993"/>
          <exon-only e_score="0.542"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12158" e_stop="12136" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.942">
            <gDNA_intron_boundary i_start="12135" i_stop="10615" i_length="1521"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10614" e_stop="10450" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10449" i_stop="8569" i_length="1881"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8568" e_stop="7987" e_length="582"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="7986" i_stop="7884" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7883" e_stop="7581" e_length="303"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.731">
            <gDNA_intron_boundary i_start="7580" i_stop="7063" i_length="518"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="7062" e_stop="6492" e_length="571"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="6491" i_stop="6392" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="0.542">
            <gDNA_exon_boundary e_start="6391" e_stop="6368" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12158" stop="12136"/>
              <exon start="10614" stop="10450"/>
              <exon start="8568" stop="8194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10495" stop="10450"/>
              <exon start="8568" stop="7987"/>
              <exon start="7883" stop="7816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8135" stop="7987"/>
              <exon start="7883" stop="7581"/>
              <exon start="7062" stop="6849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8102" stop="7987"/>
              <exon start="7883" stop="7581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7760" stop="7581"/>
              <exon start="7062" stop="6497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6826" stop="6492"/>
              <exon start="6391" stop="6368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGGCGGGAGTGACTCAACTCTG : ATCAGAGAAGAGTTGATGCGCGCATTGTTGGAGGCAACAAATGATGGTGACAATGGAAAAGAGAGGAGCTCAACTTCATTACCATCCTCATTCAATGATCTTGTGAAGGACATGACTTCAAATGGACAAGACATCAAGGCTTTCGCTTTCAAAACTAAAGCTATG : ATAATAAAGATGGAGCAAATGGTAGAATCAGCAAGGCAAAGTGAGTCTATTTTTTGGCACTTAGCTTCTCACGGTGTACCAAAGGGCATACATTGCCTATCCCTCAAGTTAGCTGAAGAATATGCTGAAAATGCTGCTGCACGTTCTCGCTTGCCTTCACCCCAATATGTTTCCCACCTCATTGACCCTTCCTTCCATCATGTAGTTCTTTTAACGGACAATGTGCTTGCTGCGTCTGTTGTAGTTTCCTCAACCATTAAAAGCTCCAGTAACCCAGAAAGATTGGTGTTTCATATAGTTACTGATAAGAAGACATACACAGCAATGCATGCATGGTTTGCTGTAAACTCTGTTAATTCGGCTGTCTTGGAAGTAAGAGGATTGCATCAGTATGATTGGTCTCATGAAGTGAATATTGGGATTAAGGAGATGATAGAGATTCATAGATTGATCTGTAGTCACAAGCTTGACAGCATGAAAAGGGAAAATATTCCAAACAAGTATGAACATGAAAAAGATTTGCAGCATCTACGGCCTAGCTGTACATCCCTCTTGAATCATCTGCGCATCTATATCCCCGAG : CTTTTCCCAGACCTGAACAAGATTGTATTTTTGGACGATGATACTGTAGTACAGCATGATTTATCGTCTCTGTGGGAACTTGATCTCAACGGGAAAGTTGTTGGTGCAGCTTTTGACTCGAGTTGTGGAGATGACTGTTGCCCTGGAAGAAAGTACAAGGATTACTTTAATTTTACGAGTCCTATTATATCATCTAAGTTGGATTATGATCGTTGCGGATGGCTTTATGGAATGAATGTCTTTGATCTCCAGGCTTGGAGGAAGACTAACATCACTGCAACTTACCATCACTGGCTTAAACTT : AACCTGAACTCTGGTTTCGAATTGTGGAATCCTGGAGCACTTCCGCCTTCTCTAATTGCTTTTGAGGGTCATGTGCACCGGATTGATGCTTCATGGCACATTGCTGGTTTAGGTTATCGATCCATTATTGATGTCACACAATCTGCACTGGAAGATGGAGCAGTTGTACATTTCAGTGGACCAGCCAAGCCATGGCTTGAGATTGGGGCCCCTGAGATACGAAGCTTGTGGAGCCGCCATGTAAATATGTCAAGTGAATTCATTAGGAAATGTGGAATCATGGAGTGAACAATTAAGGGGACAAAGTCTCACTCTCAACGTGAAATGTATCAGAATTTAGCCTCGATATATATTCTGAGTTGGAGGGAAGAAGGTACAGCCTTCAGTCTCCAATCAGACCACACAGTAGTCTCCCTGTATAGACGAGAAGCTAGCATGCCATATACTACTCAGATTAGATACTGTTTGACAATCTTCGAGATGCAATAGGTTTATATAGGTATAGGTATTGTAAAAGTAATTTTCCACGTATGTTTCCTTAAATATATATATATATATATATATAACAATA : ATGATCGTCAACAACTCAAGACAG</gDNA_template>
            <first_frame> S  A  G  V  T  Q  L  * :   S  E  K  S  *  C  A  H  C  W  R  Q  Q  M  M  V  T  M  E  K  R  G  A  Q  L  H  Y  H  P  H  S  M  I  L  *  R  T  *  L  Q  M  D  K  T  S  R  L  S  L  S  K  L  K  L  * :   *  *  R  W  S  K  W  *  N  Q  Q  G  K  V  S  L  F  F  G  T  *  L  L  T  V  Y  Q  R  A  Y  I  A  Y  P  S  S  *  L  K  N  M  L  K  M  L  L  H  V  L  A  C  L  H  P  N  M  F  P  T  S  L  T  L  P  S  I  M  *  F  F  *  R  T  M  C  L  L  R  L  L  *  F  P  Q  P  L  K  A  P  V  T  Q  K  D  W  C  F  I  *  L  L  I  R  R  H  T  Q  Q  C  M  H  G  L  L  *  T  L  L  I  R  L  S  W  K  *  E  D  C  I  S  M  I  G  L  M  K  *  I  L  G  L  R  R  *  *  R  F  I  D  *  S  V  V  T  S  L  T  A  *  K  G  K  I  F  Q  T  S  M  N  M  K  K  I  C  S  I  Y  G  L  A  V  H  P  S  *  I  I  C  A  S  I  S  P  S :   F  S  Q  T  *  T  R  L  Y  F  W  T  M  I  L  *  Y  S  M  I  Y  R  L  C  G  N  L  I  S  T  G  K  L  L  V  Q  L  L  T  R  V  V  E  M  T  V  A  L  E  E  S  T  R  I  T  L  I  L  R  V  L  L  Y  H  L  S  W  I  M  I  V  A  D  G  F  M  E  *  M  S  L  I  S  R  L  G  G  R  L  T  S  L  Q  L  T  I  T  G  L  N  L :   T  *  T  L  V  S  N  C  G  I  L  E  H  F  R  L  L  *  L  L  L  R  V  M  C  T  G  L  M  L  H  G  T  L  L  V  *  V  I  D  P  L  L  M  S  H  N  L  H  W  K  M  E  Q  L  Y  I  S  V  D  Q  P  S  H  G  L  R  L  G  P  L  R  Y  E  A  C  G  A  A  M  *  I  C  Q  V  N  S  L  G  N  V  E  S  W  S  E  Q  L  R  G  Q  S  L  T  L  N  V  K  C  I  R  I  *  P  R  Y  I  F  *  V  G  G  K  K  V  Q  P  S  V  S  N  Q  T  T  Q  *  S  P  C  I  D  E  K  L  A  C  H  I  L  L  R  L  D  T  V  *  Q  S  S  R  C  N  R  F  I  *  V  *  V  L  *  K  *  F  S  T  Y  V  S  L  N  I  Y  I  Y  I  Y  I  T  I  :  M  I  V  N  N  S  R  Q </first_frame>
            <second_frame>  R  R  E  *  L  N  S   : D  Q  R  R  V  D  A  R  I  V  G  G  N  K  *  W  *  Q  W  K  R  E  E  L  N  F  I  T  I  L  I  Q  *  S  C  E  G  H  D  F  K  W  T  R  H  Q  G  F  R  F  Q  N  *  S  Y   : D  N  K  D  G  A  N  G  R  I  S  K  A  K  *  V  Y  F  L  A  L  S  F  S  R  C  T  K  G  H  T  L  P  I  P  Q  V  S  *  R  I  C  *  K  C  C  C  T  F  S  L  A  F  T  P  I  C  F  P  P  H  *  P  F  L  P  S  C  S  S  F  N  G  Q  C  A  C  C  V  C  C  S  F  L  N  H  *  K  L  Q  *  P  R  K  I  G  V  S  Y  S  Y  *  *  E  D  I  H  S  N  A  C  M  V  C  C  K  L  C  *  F  G  C  L  G  S  K  R  I  A  S  V  *  L  V  S  *  S  E  Y  W  D  *  G  D  D  R  D  S  *  I  D  L  *  S  Q  A  *  Q  H  E  K  G  K  Y  S  K  Q  V  *  T  *  K  R  F  A  A  S  T  A  *  L  Y  I  P  L  E  S  S  A  H  L  Y  P  R   : A  F  P  R  P  E  Q  D  C  I  F  G  R  *  Y  C  S  T  A  *  F  I  V  S  V  G  T  *  S  Q  R  E  S  C  W  C  S  F  *  L  E  L  W  R  *  L  L  P  W  K  K  V  Q  G  L  L  *  F  Y  E  S  Y  Y  I  I  *  V  G  L  *  S  L  R  M  A  L  W  N  E  C  L  *  S  P  G  L  E  E  D  *  H  H  C  N  L  P  S  L  A  *  T   : *  P  E  L  W  F  R  I  V  E  S  W  S  T  S  A  F  S  N  C  F  *  G  S  C  A  P  D  *  C  F  M  A  H  C  W  F  R  L  S  I  H  Y  *  C  H  T  I  C  T  G  R  W  S  S  C  T  F  Q  W  T  S  Q  A  M  A  *  D  W  G  P  *  D  T  K  L  V  E  P  P  C  K  Y  V  K  *  I  H  *  E  M  W  N  H  G  V  N  N  *  G  D  K  V  S  L  S  T  *  N  V  S  E  F  S  L  D  I  Y  S  E  L  E  G  R  R  Y  S  L  Q  S  P  I  R  P  H  S  S  L  P  V  *  T  R  S  *  H  A  I  Y  Y  S  D  *  I  L  F  D  N  L  R  D  A  I  G  L  Y  R  Y  R  Y  C  K  S  N  F  P  R  M  F  P  *  I  Y  I  Y  I  Y  I  *  Q  * :   *  S  S  T  T  Q  D   </second_frame>
            <third_frame>   G  G  S  D  S  T  L  :  I  R  E  E  L  M  R  A  L  L  E  A  T  N  D  G  D  N  G  K  E  R  S  S  T  S  L  P  S  S  F  N  D  L  V  K  D  M  T  S  N  G  Q  D  I  K  A  F  A  F  K  T  K  A  M  :  I  I  K  M  E  Q  M  V  E  S  A  R  Q  S  E  S  I  F  W  H  L  A  S  H  G  V  P  K  G  I  H  C  L  S  L  K  L  A  E  E  Y  A  E  N  A  A  A  R  S  R  L  P  S  P  Q  Y  V  S  H  L  I  D  P  S  F  H  H  V  V  L  L  T  D  N  V  L  A  A  S  V  V  V  S  S  T  I  K  S  S  S  N  P  E  R  L  V  F  H  I  V  T  D  K  K  T  Y  T  A  M  H  A  W  F  A  V  N  S  V  N  S  A  V  L  E  V  R  G  L  H  Q  Y  D  W  S  H  E  V  N  I  G  I  K  E  M  I  E  I  H  R  L  I  C  S  H  K  L  D  S  M  K  R  E  N  I  P  N  K  Y  E  H  E  K  D  L  Q  H  L  R  P  S  C  T  S  L  L  N  H  L  R  I  Y  I  P  E  :  L  F  P  D  L  N  K  I  V  F  L  D  D  D  T  V  V  Q  H  D  L  S  S  L  W  E  L  D  L  N  G  K  V  V  G  A  A  F  D  S  S  C  G  D  D  C  C  P  G  R  K  Y  K  D  Y  F  N  F  T  S  P  I  I  S  S  K  L  D  Y  D  R  C  G  W  L  Y  G  M  N  V  F  D  L  Q  A  W  R  K  T  N  I  T  A  T  Y  H  H  W  L  K  L  :  N  L  N  S  G  F  E  L  W  N  P  G  A  L  P  P  S  L  I  A  F  E  G  H  V  H  R  I  D  A  S  W  H  I  A  G  L  G  Y  R  S  I  I  D  V  T  Q  S  A  L  E  D  G  A  V  V  H  F  S  G  P  A  K  P  W  L  E  I  G  A  P  E  I  R  S  L  W  S  R  H  V  N  M  S  S  E  F  I  R  K  C  G  I  M  E  *  T  I  K  G  T  K  S  H  S  Q  R  E  M  Y  Q  N  L  A  S  I  Y  I  L  S  W  R  E  E  G  T  A  F  S  L  Q  S  D  H  T  V  V  S  L  Y  R  R  E  A  S  M  P  Y  T  T  Q  I  R  Y  C  L  T  I  F  E  M  Q  *  V  Y  I  G  I  G  I  V  K  V  I  F  H  V  C  F  L  K  Y  I  Y  I  Y  I  Y  N  N   : N  D  R  Q  Q  L  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12156" stop="12136"/>
                    <exon start="10614" stop="10450"/>
                    <exon start="8568" stop="7987"/>
                    <exon start="7883" stop="7581"/>
                    <exon start="7062" stop="6775"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1356</number_coding_nucleotides>
                  <number_encoded_amino_acids>452</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGSDSTLIREELMRALLEATNDGDNGKERSSTSLPSSFNDLVKDMTSNGQDIKAFAFKTKAMIIKMEQMVESARQSESIFWHLASHGVPKGIHCLSLKLAEEYAENAAARSRLPSPQYVSHLIDPSFHHVVLLTDNVLAASVVVSSTIKSSSNPERLVFHIVTDKKTYTAMHAWFAVNSVNSAVLEVRGLHQYDWSHEVNIGIKEMIEIHRLICSHKLDSMKRENIPNKYEHEKDLQHLRPSCTSLLNHLRIYIPELFPDLNKIVFLDDDTVVQHDLSSLWELDLNGKVVGAAFDSSCGDDCCPGRKYKDYFNFTSPIISSKLDYDRCGWLYGMNVFDLQAWRKTNITATYHHWLKLNLNSGFELWNPGALPPSLIAFEGHVHRIDASWHIAGLGYRSIIDVTQSALEDGAVVHFSGPAKPWLEIGAPEIRSLWSRHVNMSSEFIRKCGIME*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6774" stop="6574"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIKGTKSHSQREMYQNLASIYILSWREEGTAFSLQSDHTVVSLYRREASMPYTTQIRYCLTIFEMQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13131" PGL_stop="12428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13131" e_stop="12957"/>
            <exon e_start="12681" e_stop="12428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13131" e_stop="12957" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="12956" i_stop="12682" i_length="275"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12681" e_stop="12428" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13131" stop="12957"/>
              <exon start="12681" stop="12512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13129" stop="12957"/>
              <exon start="12681" stop="12497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13128" stop="12957"/>
              <exon start="12681" stop="12428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCCTTCAGCATTTAACGCGCCTATCAGTTTTGGCTTTTCGGCTTTGTCGTCCCCACTTTAATCTTCACACAGCCAAAAGAGTGTGATCTATAGTGAAACTAAATATAGAAACTGAACAATCTTCATTATTAAGCTTCTGAAGATTTCAACGAGCTATCAGATTCTGTTTTAAG : AGGATGAGTATGAGTGTGGAGTGAATGAGCACTCGAGCAAGCGGATCTGAAGCTGGAACCGAGAAGAAATGAGATTATTTGTTTGGAAGAAGAAGAGGAAACTGAAGTTCAATATTTTGATTAGATGATGAAGTTTTATATATCGGCAACGGGGATTAAAAAACTGACTATATCGAGTTCCGCCGCTGTTACTAGCGGCAGAGGTGGCGTAGGGTTGCCGGTTATTATGAAAGGGAAAGGATTACCGTCGGTGA</gDNA_template>
            <first_frame> F  P  S  A  F  N  A  P  I  S  F  G  F  S  A  L  S  S  P  L  *  S  S  H  S  Q  K  S  V  I  Y  S  E  T  K  Y  R  N  *  T  I  F  I  I  K  L  L  K  I  S  T  S  Y  Q  I  L  F  *   : E  D  E  Y  E  C  G  V  N  E  H  S  S  K  R  I  *  S  W  N  R  E  E  M  R  L  F  V  W  K  K  K  R  K  L  K  F  N  I  L  I  R  *  *  S  F  I  Y  R  Q  R  G  L  K  N  *  L  Y  R  V  P  P  L  L  L  A  A  E  V  A  *  G  C  R  L  L  *  K  G  K  D  Y  R  R  * </first_frame>
            <second_frame>  S  L  Q  H  L  T  R  L  S  V  L  A  F  R  L  C  R  P  H  F  N  L  H  T  A  K  R  V  *  S  I  V  K  L  N  I  E  T  E  Q  S  S  L  L  S  F  *  R  F  Q  R  A  I  R  F  C  F  K  :  R  M  S  M  S  V  E  *  M  S  T  R  A  S  G  S  E  A  G  T  E  K  K  *  D  Y  L  F  G  R  R  R  G  N  *  S  S  I  F  *  L  D  D  E  V  L  Y  I  G  N  G  D  *  K  T  D  Y  I  E  F  R  R  C  Y  *  R  Q  R  W  R  R  V  A  G  Y  Y  E  R  E  R  I  T  V  G   </second_frame>
            <third_frame>   P  F  S  I  *  R  A  Y  Q  F  W  L  F  G  F  V  V  P  T  L  I  F  T  Q  P  K  E  C  D  L  *  *  N  *  I  *  K  L  N  N  L  H  Y  *  A  S  E  D  F  N  E  L  S  D  S  V  L  R :   G  *  V  *  V  W  S  E  *  A  L  E  Q  A  D  L  K  L  E  P  R  R  N  E  I  I  C  L  E  E  E  E  E  T  E  V  Q  Y  F  D  *  M  M  K  F  Y  I  S  A  T  G  I  K  K  L  T  I  S  S  S  A  A  V  T  S  G  R  G  G  V  G  L  P  V  I  M  K  G  K  G  L  P  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0018L21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19165" PGL_stop="20065"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19165" e_stop="19243"/>
            <exon e_start="19594" e_stop="20065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19165" e_stop="19243" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19244" i_stop="19593" i_length="350"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="19594" e_stop="20065" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19165" stop="19243"/>
              <exon start="19594" stop="20065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19177" stop="19243"/>
              <exon start="19594" stop="19947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGTCGTAAAATCTTCTGGAATACAATTGATTTTGATCTATTAGGTGTTTTGAGACGTCAAAAGATAAACGCTTGAAG : GAATGTTCAAACGCGAAAACAGGATGCTGAAGCAAAGAAATAATGCCCAGAGTATACAAATGCCTGTTATTACTATGTTTTTTGTTTTGATTTGTGTTCTAGTTTGGGTTTTGTGTAGGGAAACTGGAGAAAAATCTGATTCGTTGTCTGGTTTAGTTAAGGAAAATTTGAGTAGTTTTAGCTTTTCGGTTAAGTTAGACCCGACTGTGGAGTTCAGAAATGAAACAGATTTAATATGGCAAATACCGGACTCACCCAAGGCAATTCTGTTTCTGGCACATGGTTGTAATGGTAAAGCGGCGAACTTTTGGGACAGATCACCTAAGTGTCCGAATTGTGTGGGTTTACCTGAAGAAAGGCTTATCGTCCTTAATGCCTTAGCTAGGAGATTTGCTGTTCTTGCGGTGTCTAGTGCTGGGAGGTGCTGGTCGATCGAAGAGGAAAGGTTGATCGTTAAAGATATTATCGAATG</gDNA_template>
            <first_frame> T  V  V  K  S  S  G  I  Q  L  I  L  I  Y  *  V  F  *  D  V  K  R  *  T  L  E   : G  M  F  K  R  E  N  R  M  L  K  Q  R  N  N  A  Q  S  I  Q  M  P  V  I  T  M  F  F  V  L  I  C  V  L  V  W  V  L  C  R  E  T  G  E  K  S  D  S  L  S  G  L  V  K  E  N  L  S  S  F  S  F  S  V  K  L  D  P  T  V  E  F  R  N  E  T  D  L  I  W  Q  I  P  D  S  P  K  A  I  L  F  L  A  H  G  C  N  G  K  A  A  N  F  W  D  R  S  P  K  C  P  N  C  V  G  L  P  E  E  R  L  I  V  L  N  A  L  A  R  R  F  A  V  L  A  V  S  S  A  G  R  C  W  S  I  E  E  E  R  L  I  V  K  D  I  I  E   </first_frame>
            <second_frame>  Q  S  *  N  L  L  E  Y  N  *  F  *  S  I  R  C  F  E  T  S  K  D  K  R  L  K  :  E  C  S  N  A  K  T  G  C  *  S  K  E  I  M  P  R  V  Y  K  C  L  L  L  L  C  F  L  F  *  F  V  F  *  F  G  F  C  V  G  K  L  E  K  N  L  I  R  C  L  V  *  L  R  K  I  *  V  V  L  A  F  R  L  S  *  T  R  L  W  S  S  E  M  K  Q  I  *  Y  G  K  Y  R  T  H  P  R  Q  F  C  F  W  H  M  V  V  M  V  K  R  R  T  F  G  T  D  H  L  S  V  R  I  V  W  V  Y  L  K  K  G  L  S  S  L  M  P  *  L  G  D  L  L  F  L  R  C  L  V  L  G  G  A  G  R  S  K  R  K  G  *  S  L  K  I  L  S  N  </second_frame>
            <third_frame>   S  R  K  I  F  W  N  T  I  D  F  D  L  L  G  V  L  R  R  Q  K  I  N  A  *  R :   N  V  Q  T  R  K  Q  D  A  E  A  K  K  *  C  P  E  Y  T  N  A  C  Y  Y  Y  V  F  C  F  D  L  C  S  S  L  G  F  V  *  G  N  W  R  K  I  *  F  V  V  W  F  S  *  G  K  F  E  *  F  *  L  F  G  *  V  R  P  D  C  G  V  Q  K  *  N  R  F  N  M  A  N  T  G  L  T  Q  G  N  S  V  S  G  T  W  L  *  W  *  S  G  E  L  L  G  Q  I  T  *  V  S  E  L  C  G  F  T  *  R  K  A  Y  R  P  *  C  L  S  *  E  I  C  C  S  C  G  V  *  C  W  E  V  L  V  D  R  R  G  K  V  D  R  *  R  Y  Y  R  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19234" stop="19243"/>
                    <exon start="19594" stop="20063"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLEGMFKRENRMLKQRNNAQSIQMPVITMFFVLICVLVWVLCRETGEKSDSLSGLVKENLSSFSFSVKLDPTVEFRNETDLIWQIPDSPKAILFLAHGCNGKAANFWDRSPKCPNCVGLPEERLIVLNALARRFAVLAVSSAGRCWSIEEERLIVKDIIE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="24642" PGL_stop="19585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24642" e_stop="24618"/>
            <exon e_start="21101" e_stop="19585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.712" acc_prob="0.000" e_score="0.720"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.720">
            <gDNA_exon_boundary e_start="24642" e_stop="24618" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.712" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24617" i_stop="21102" i_length="3516"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="21101" e_stop="19585" e_length="1517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24642" stop="24618"/>
              <exon start="21101" stop="19585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745624" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCTTTTTTGTTTTATCCTTTAAG : AACAACAGAGATAAATAGTTTGATTTCATTTTTCCAATCGTTTCAAGAACAGAGGCTGTGTTTCCTTTAATGTTGAGATAACAAGAAGTTATAGGAACTTCCACTTGAAAAGTTCAATCCCTAAGCACAAGAAAATAGACCTAATTTCAATTCCTTTCCTCTCAAAAAAGAAAGTAGACCTAGTTCCTAAGTGTTTCACTATACACTTCTTTCTGGATATAAAAAAAGGAAAATCCAAATAATAACAGTAGGCAGCCCTTTTCACATGTAGGAAGTTTGAATGCCGAGACAATATTTTTCACCACAATGTGACCACAGTTATTCCCACTTGGACTTCAACCTCGTGAAATAACATGAGCACACAACAGTATAGAGATCTGTTGTCACCCAATCCAAAGCCGTGGCAACAATATTCCACCCATGATGACTCAAGGAAGATTACACAGCATAAGAATCTGATCAGCTCATATGAGTTTCAAACCAGTTAAAGATTTGCTCAGACTGCAAACTGGTCATTTCATGATAAGCAAACGCAAGGTTCATTTCTTCTTGAATGTGATTTGCTATGGACTTGTCAGGGAGAATAATCTCTCTCTCTTTGAGAGCTTCCTTCCATTGTATTGTACGCCCGTCATTTCTCATGAAACCTTTTGTATCAACAAAATCCTTTTCCTGGAACAGACTATACAACTTCACAGAGGTAGCTAGATCAAGACCAGGAATCCTATCAGATAATAGATTAGGTGACAATGCAAACTCCATGCATTTGACCTCTGCAACATCAATGCCTTTACCCTGCAGGAGTGTCAAGTATCTGGCTATTCTCACACTTCTCCTTTTATCTTTGGGCATGTGCACAAAAAGAGTAGGAGGGTAACTCTTCGGAATGTCCATTCGATCAAACACTCCCTCAGCAATCATTATTGTTATGCTACTGAATCTTAAATCAGTTGCAAGGACTGAAACAAAATATCCACCAGATGAAGCACCCAAAGCTACAATAGGCAGACTTTGAACCTTTTGTTTCACAACCCACCATTCGATAATATCTTTAACGATCAACCTTTCCTCTTCGATCGACCAGCACCTCCCAGCACTAGACACCGCAAGAACAGCAAATCTCCTAGCTAAGGCATTAAGGACGATAAGCCTTTCTTCAGGTAAACCCACACAATTCGGACACTTAGGTGATCTGTCCCAAAAGTTCGCCGCTTTACCATTACAACCATGTGCCAGAAACAGAATTGCCTTGGGTGAGTCCGGTATTTGCCATATTAAATCTGTTTCATTTCTGAACTCCACAGTCGGGTCTAACTTAACCGAAAAGCTAAAACTACTCAAATTTTCCTTAACTAAACCAGACAACGAATCAGATTTTTCTCCAGTTTCCCTACACAAAACCCAAACTAGAACACAAATCAAAACAAAAAACATAGTAATAACAGGCATTTGTATACTCTGGGCATTATTTCTTTGCTTCAGCATCCTGTTTTCGCGTTTGAACATTCCTAGAAAAC</gDNA_template>
            <first_frame> F  L  F  C  F  I  L  *   : E  Q  Q  R  *  I  V  *  F  H  F  S  N  R  F  K  N  R  G  C  V  S  F  N  V  E  I  T  R  S  Y  R  N  F  H  L  K  S  S  I  P  K  H  K  K  I  D  L  I  S  I  P  F  L  S  K  K  K  V  D  L  V  P  K  C  F  T  I  H  F  F  L  D  I  K  K  G  K  S  K  *  *  Q  *  A  A  L  F  T  C  R  K  F  E  C  R  D  N  I  F  H  H  N  V  T  T  V  I  P  T  W  T  S  T  S  *  N  N  M  S  T  Q  Q  Y  R  D  L  L  S  P  N  P  K  P  W  Q  Q  Y  S  T  H  D  D  S  R  K  I  T  Q  H  K  N  L  I  S  S  Y  E  F  Q  T  S  *  R  F  A  Q  T  A  N  W  S  F  H  D  K  Q  T  Q  G  S  F  L  L  E  C  D  L  L  W  T  C  Q  G  E  *  S  L  S  L  *  E  L  P  S  I  V  L  Y  A  R  H  F  S  *  N  L  L  Y  Q  Q  N  P  F  P  G  T  D  Y  T  T  S  Q  R  *  L  D  Q  D  Q  E  S  Y  Q  I  I  D  *  V  T  M  Q  T  P  C  I  *  P  L  Q  H  Q  C  L  Y  P  A  G  V  S  S  I  W  L  F  S  H  F  S  F  Y  L  W  A  C  A  Q  K  E  *  E  G  N  S  S  E  C  P  F  D  Q  T  L  P  Q  Q  S  L  L  L  C  Y  *  I  L  N  Q  L  Q  G  L  K  Q  N  I  H  Q  M  K  H  P  K  L  Q  *  A  D  F  E  P  F  V  S  Q  P  T  I  R  *  Y  L  *  R  S  T  F  P  L  R  S  T  S  T  S  Q  H  *  T  P  Q  E  Q  Q  I  S  *  L  R  H  *  G  R  *  A  F  L  Q  V  N  P  H  N  S  D  T  *  V  I  C  P  K  S  S  P  L  Y  H  Y  N  H  V  P  E  T  E  L  P  W  V  S  P  V  F  A  I  L  N  L  F  H  F  *  T  P  Q  S  G  L  T  *  P  K  S  *  N  Y  S  N  F  P  *  L  N  Q  T  T  N  Q  I  F  L  Q  F  P  Y  T  K  P  K  L  E  H  K  S  K  Q  K  T  *  *  *  Q  A  F  V  Y  S  G  H  Y  F  F  A  S  A  S  C  F  R  V  *  T  F  L  E  N </first_frame>
            <second_frame>  S  F  F  V  L  S  F  K  :  N  N  R  D  K  *  F  D  F  I  F  P  I  V  S  R  T  E  A  V  F  P  L  M  L  R  *  Q  E  V  I  G  T  S  T  *  K  V  Q  S  L  S  T  R  K  *  T  *  F  Q  F  L  S  S  Q  K  R  K  *  T  *  F  L  S  V  S  L  Y  T  S  F  W  I  *  K  K  E  N  P  N  N  N  S  R  Q  P  F  S  H  V  G  S  L  N  A  E  T  I  F  F  T  T  M  *  P  Q  L  F  P  L  G  L  Q  P  R  E  I  T  *  A  H  N  S  I  E  I  C  C  H  P  I  Q  S  R  G  N  N  I  P  P  M  M  T  Q  G  R  L  H  S  I  R  I  *  S  A  H  M  S  F  K  P  V  K  D  L  L  R  L  Q  T  G  H  F  M  I  S  K  R  K  V  H  F  F  L  N  V  I  C  Y  G  L  V  R  E  N  N  L  S  L  F  E  S  F  L  P  L  Y  C  T  P  V  I  S  H  E  T  F  C  I  N  K  I  L  F  L  E  Q  T  I  Q  L  H  R  G  S  *  I  K  T  R  N  P  I  R  *  *  I  R  *  Q  C  K  L  H  A  F  D  L  C  N  I  N  A  F  T  L  Q  E  C  Q  V  S  G  Y  S  H  T  S  P  F  I  F  G  H  V  H  K  K  S  R  R  V  T  L  R  N  V  H  S  I  K  H  S  L  S  N  H  Y  C  Y  A  T  E  S  *  I  S  C  K  D  *  N  K  I  S  T  R  *  S  T  Q  S  Y  N  R  Q  T  L  N  L  L  F  H  N  P  P  F  D  N  I  F  N  D  Q  P  F  L  F  D  R  P  A  P  P  S  T  R  H  R  K  N  S  K  S  P  S  *  G  I  K  D  D  K  P  F  F  R  *  T  H  T  I  R  T  L  R  *  S  V  P  K  V  R  R  F  T  I  T  T  M  C  Q  K  Q  N  C  L  G  *  V  R  Y  L  P  Y  *  I  C  F  I  S  E  L  H  S  R  V  *  L  N  R  K  A  K  T  T  Q  I  F  L  N  *  T  R  Q  R  I  R  F  F  S  S  F  P  T  Q  N  P  N  *  N  T  N  Q  N  K  K  H  S  N  N  R  H  L  Y  T  L  G  I  I  S  L  L  Q  H  P  V  F  A  F  E  H  S  *  K   </second_frame>
            <third_frame>   P  F  L  F  Y  P  L  R :   T  T  E  I  N  S  L  I  S  F  F  Q  S  F  Q  E  Q  R  L  C  F  L  *  C  *  D  N  K  K  L  *  E  L  P  L  E  K  F  N  P  *  A  Q  E  N  R  P  N  F  N  S  F  P  L  K  K  E  S  R  P  S  S  *  V  F  H  Y  T  L  L  S  G  Y  K  K  R  K  I  Q  I  I  T  V  G  S  P  F  H  M  *  E  V  *  M  P  R  Q  Y  F  S  P  Q  C  D  H  S  Y  S  H  L  D  F  N  L  V  K  *  H  E  H  T  T  V  *  R  S  V  V  T  Q  S  K  A  V  A  T  I  F  H  P  *  *  L  K  E  D  Y  T  A  *  E  S  D  Q  L  I  *  V  S  N  Q  L  K  I  C  S  D  C  K  L  V  I  S  *  *  A  N  A  R  F  I  S  S  *  M  *  F  A  M  D  L  S  G  R  I  I  S  L  S  L  R  A  S  F  H  C  I  V  R  P  S  F  L  M  K  P  F  V  S  T  K  S  F  S  W  N  R  L  Y  N  F  T  E  V  A  R  S  R  P  G  I  L  S  D  N  R  L  G  D  N  A  N  S  M  H  L  T  S  A  T  S  M  P  L  P  C  R  S  V  K  Y  L  A  I  L  T  L  L  L  L  S  L  G  M  C  T  K  R  V  G  G  *  L  F  G  M  S  I  R  S  N  T  P  S  A  I  I  I  V  M  L  L  N  L  K  S  V  A  R  T  E  T  K  Y  P  P  D  E  A  P  K  A  T  I  G  R  L  *  T  F  C  F  T  T  H  H  S  I  I  S  L  T  I  N  L  S  S  S  I  D  Q  H  L  P  A  L  D  T  A  R  T  A  N  L  L  A  K  A  L  R  T  I  S  L  S  S  G  K  P  T  Q  F  G  H  L  G  D  L  S  Q  K  F  A  A  L  P  L  Q  P  C  A  R  N  R  I  A  L  G  E  S  G  I  C  H  I  K  S  V  S  F  L  N  S  T  V  G  S  N  L  T  E  K  L  K  L  L  K  F  S  L  T  K  P  D  N  E  S  D  F  S  P  V  S  L  H  K  T  Q  T  R  T  Q  I  K  T  K  N  I  V  I  T  G  I  C  I  L  W  A  L  F  L  C  F  S  I  L  F  S  R  L  N  I  P  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20086" stop="19586"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFCFTTHHSIISLTINLSSSIDQHLPALDTARTANLLAKALRTISLSSGKPTQFGHLGDLSQKFAALPLQPCARNRIALGESGICHIKSVSFLNSTVGSNLTEKLKLLKFSLTKPDNESDFSPVSLHKTQTRTQIKTKNIVITGICILWALFLCFSILFSRLNIPRK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20542" stop="20225"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAMDLSGRIISLSLRASFHCIVRPSFLMKPFVSTKSFSWNRLYNFTEVARSRPGILSDNRLGDNANSMHLTSATSMPLPCRSVKYLAILTLLLLSLGMCTKRVGG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21078" stop="20860"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHFSNRFKNRGCVSFNVEITRSYRNFHLKSSIPKHKKIDLISIPFLSKKKVDLVPKCFTIHFFLDIKKGKSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="20497" PGL_stop="21028"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20497" e_stop="21028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="20497" e_stop="21028" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20497" stop="21028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCAAAGAGAGAGAGATTATTCTCCCTGACAAGTCCATAGCAAATCACATTCAAGAAGAAATGAACCTTGCGTTTGCTTATCATGAAATGACCAGTTTGCAGTCTGAGCAAATCTTTAACTGGTTTGAAACTCATATGAGCTGATCAGATTCTTATGCTGTGTAATCTTCCTTGAGTCATCATGGGTGGAATATTGTTGCCACGGCTTTGGATTGGGTGACAACAGATCTCTATACTGTTGTGTGCTCATGTTATTTCACGAGGTTGAAGTCCAAGTGGGAATAACTGTGGTCACATTGTGGTGAAAAATATTGTCTCGGCATTCAAACTTCCTACATGTGAAAAGGGCTGCCTACTGTTATTATTTGGATTTTCCTTTTTTTATATCCAGAAAGAAGTGTATAGTGAAACACTTAGGAACTAGGTCTACTTTCTTTTTTGAGAGGAAAGGAATTGAAATTAGGTCTATTTTCTTGTGCTTAGGGATTGAACTTTTCAAGTGGAAGTTCCTATAACTTCTTGTTATCTCA</gDNA_template>
            <first_frame> L  S  K  R  E  R  L  F  S  L  T  S  P  *  Q  I  T  F  K  K  K  *  T  L  R  L  L  I  M  K  *  P  V  C  S  L  S  K  S  L  T  G  L  K  L  I  *  A  D  Q  I  L  M  L  C  N  L  P  *  V  I  M  G  G  I  L  L  P  R  L  W  I  G  *  Q  Q  I  S  I  L  L  C  A  H  V  I  S  R  G  *  S  P  S  G  N  N  C  G  H  I  V  V  K  N  I  V  S  A  F  K  L  P  T  C  E  K  G  C  L  L  L  L  F  G  F  S  F  F  Y  I  Q  K  E  V  Y  S  E  T  L  R  N  *  V  Y  F  L  F  *  E  E  R  N  *  N  *  V  Y  F  L  V  L  R  D  *  T  F  Q  V  E  V  P  I  T  S  C  Y  L  </first_frame>
            <second_frame>  S  Q  R  E  R  D  Y  S  P  *  Q  V  H  S  K  S  H  S  R  R  N  E  P  C  V  C  L  S  *  N  D  Q  F  A  V  *  A  N  L  *  L  V  *  N  S  Y  E  L  I  R  F  L  C  C  V  I  F  L  E  S  S  W  V  E  Y  C  C  H  G  F  G  L  G  D  N  R  S  L  Y  C  C  V  L  M  L  F  H  E  V  E  V  Q  V  G  I  T  V  V  T  L  W  *  K  I  L  S  R  H  S  N  F  L  H  V  K  R  A  A  Y  C  Y  Y  L  D  F  P  F  F  I  S  R  K  K  C  I  V  K  H  L  G  T  R  S  T  F  F  F  E  R  K  G  I  E  I  R  S  I  F  L  C  L  G  I  E  L  F  K  W  K  F  L  *  L  L  V  I  S </second_frame>
            <third_frame>   L  K  E  R  E  I  I  L  P  D  K  S  I  A  N  H  I  Q  E  E  M  N  L  A  F  A  Y  H  E  M  T  S  L  Q  S  E  Q  I  F  N  W  F  E  T  H  M  S  *  S  D  S  Y  A  V  *  S  S  L  S  H  H  G  W  N  I  V  A  T  A  L  D  W  V  T  T  D  L  Y  T  V  V  C  S  C  Y  F  T  R  L  K  S  K  W  E  *  L  W  S  H  C  G  E  K  Y  C  L  G  I  Q  T  S  Y  M  *  K  G  L  P  T  V  I  I  W  I  F  L  F  L  Y  P  E  R  S  V  *  *  N  T  *  E  L  G  L  L  S  F  L  R  G  K  E  L  K  L  G  L  F  S  C  A  *  G  L  N  F  S  S  G  S  S  Y  N  F  L  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20804" stop="21013"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KILSRHSNFLHVKRAAYCYYLDFPFFISRKKCIVKHLGTRSTFFFERKGIEIRSIFLCLGIELFKWKFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="24447" PGL_stop="25014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24447" e_stop="25014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24447" e_stop="25014" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24447" stop="25014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737830" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTTTGTTGAAGAAGCTCAATGCCTCGTCACATCGGTTGCATTTCCACTAATAAAGGAGGTAGGACAACGGATTCGTGTTTCTCTTTTTGTTCTTGATTACTGAGGTTAGTTTGTTTTATAAGCAAAAGTAGAATGCTTTATTTTTATTTGGAAAGATACCTTCATTACCTTAAAGGATAAAACAAAAAAGGAATAATCTGAAATTGGGAGCAGTCATTCACACTTGTAATACAACAAGAAATGTTTTACTGATAACTGATTAAACAATGAAGGTTGGTATCCTCTTGATTTTGTAAGATTCAAAAGCAAACAGAAAGAACATAATTTTGTTAACGACAAGCAGATAAACATTAATCCTAAAGTAAACACACAAAATATCATAAAGAACTAGAAATAACAAGATATTGATGATAATTGTGAAAATGACTTTTCAAGCTCTGGGCTTGAGCCGACCCTGGTTGGCTAACTTGAACAACTGAGCCTGAGCTGCTGCAGCGCCGTCTGAGCTGAGTGCTGTAGCAAAATTGTTCTTGACTTGGGTGGTGCTGTAACTGAACCTCTTGCT</gDNA_template>
            <first_frame> K  V  C  *  R  S  S  M  P  R  H  I  G  C  I  S  T  N  K  G  G  R  T  T  D  S  C  F  S  F  C  S  *  L  L  R  L  V  C  F  I  S  K  S  R  M  L  Y  F  Y  L  E  R  Y  L  H  Y  L  K  G  *  N  K  K  G  I  I  *  N  W  E  Q  S  F  T  L  V  I  Q  Q  E  M  F  Y  *  *  L  I  K  Q  *  R  L  V  S  S  *  F  C  K  I  Q  K  Q  T  E  R  T  *  F  C  *  R  Q  A  D  K  H  *  S  *  S  K  H  T  K  Y  H  K  E  L  E  I  T  R  Y  *  *  *  L  *  K  *  L  F  K  L  W  A  *  A  D  P  G  W  L  T  *  T  T  E  P  E  L  L  Q  R  R  L  S  *  V  L  *  Q  N  C  S  *  L  G  W  C  C  N  *  T  S  C  </first_frame>
            <second_frame>  K  F  V  E  E  A  Q  C  L  V  T  S  V  A  F  P  L  I  K  E  V  G  Q  R  I  R  V  S  L  F  V  L  D  Y  *  G  *  F  V  L  *  A  K  V  E  C  F  I  F  I  W  K  D  T  F  I  T  L  K  D  K  T  K  K  E  *  S  E  I  G  S  S  H  S  H  L  *  Y  N  K  K  C  F  T  D  N  *  L  N  N  E  G  W  Y  P  L  D  F  V  R  F  K  S  K  Q  K  E  H  N  F  V  N  D  K  Q  I  N  I  N  P  K  V  N  T  Q  N  I  I  K  N  *  K  *  Q  D  I  D  D  N  C  E  N  D  F  S  S  S  G  L  E  P  T  L  V  G  *  L  E  Q  L  S  L  S  C  C  S  A  V  *  A  E  C  C  S  K  I  V  L  D  L  G  G  A  V  T  E  P  L  A </second_frame>
            <third_frame>   S  L  L  K  K  L  N  A  S  S  H  R  L  H  F  H  *  *  R  R  *  D  N  G  F  V  F  L  F  L  F  L  I  T  E  V  S  L  F  Y  K  Q  K  *  N  A  L  F  L  F  G  K  I  P  S  L  P  *  R  I  K  Q  K  R  N  N  L  K  L  G  A  V  I  H  T  C  N  T  T  R  N  V  L  L  I  T  D  *  T  M  K  V  G  I  L  L  I  L  *  D  S  K  A  N  R  K  N  I  I  L  L  T  T  S  R  *  T  L  I  L  K  *  T  H  K  I  S  *  R  T  R  N  N  K  I  L  M  I  I  V  K  M  T  F  Q  A  L  G  L  S  R  P  W  L  A  N  L  N  N  *  A  *  A  A  A  A  P  S  E  L  S  A  V  A  K  L  F  L  T  W  V  V  L  *  L  N  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0018L21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="26562" PGL_stop="24667"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26562" e_stop="26338"/>
            <exon e_start="25943" e_stop="25658"/>
            <exon e_start="25210" e_stop="24667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26562" e_stop="26338" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26337" i_stop="25944" i_length="394"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25943" e_stop="25658" e_length="286"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="25657" i_stop="25211" i_length="447"/>
          </intron>
          <exon e_serial="3" e_score="0.940">
            <gDNA_exon_boundary e_start="25210" e_stop="24667" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26562" stop="26338"/>
              <exon start="25943" stop="25705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26556" stop="26338"/>
              <exon start="25943" stop="25658"/>
              <exon start="25210" stop="24839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26551" stop="26338"/>
              <exon start="25943" stop="25658"/>
              <exon start="25210" stop="25176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26548" stop="26338"/>
              <exon start="25943" stop="25658"/>
              <exon start="25210" stop="24957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26548" stop="26338"/>
              <exon start="25943" stop="25658"/>
              <exon start="25210" stop="25025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26547" stop="26338"/>
              <exon start="25943" stop="25658"/>
              <exon start="25210" stop="25091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26547" stop="26338"/>
              <exon start="25943" stop="25658"/>
              <exon start="25210" stop="25098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26540" stop="26338"/>
              <exon start="25943" stop="25662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26538" stop="26338"/>
              <exon start="25943" stop="25658"/>
              <exon start="25210" stop="25157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26538" stop="26338"/>
              <exon start="25943" stop="25658"/>
              <exon start="25210" stop="25177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26407" stop="26338"/>
              <exon start="25943" stop="25658"/>
              <exon start="25210" stop="24832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25819" stop="25658"/>
              <exon start="25210" stop="24958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279052" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25744" stop="25658"/>
              <exon start="25210" stop="24682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25131" stop="24667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24963" stop="24763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366784" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCCATCTCTCCCTTCATTCGTTCTCTTTTATCTCTGTCAGCCTCCTTGAGAAGCAAACCATCATGGCAAAACAGAGAAGCAACCAGAGTTCTCGAATTCTGTGGGCCGCATTTGCTGCACTGCTCTTGCAGAATTTGGTCATTCCCGTCGTGTCTTTTGCTTCATTTGAAGAAGAGAAAAACTACTACACACCTGATCCACATACTGGAAGTCCACCAACAG : GTTCAAGCACACCACCCTATCATGCAACTCCATCTCATGGAAGCAGTAGCCATGAAAGCAAACCACCAGCAAACTGTGGCAACCCTCCAAAAGGAGGGCAGCATCATGACCCTACCCCAGCTTCTCCTTCAGGTGGCTACTATCCCCACCCTCCAAGTACACCTACACCTACACCTAGTACCCCATCCACACCCACTATTGTAACCCCACCAACTACTCCTATCATTGACCCTGGCACTCCAAGCACTCCTGCTACCCCAACACCATCACCTCCTTTTACATGCGA : TTACTGGAGGACTCACCCAGGACTGATATGGGGCTTGTTTGGTTGGTGGGGAAATGTTGGTAGTGCATTTGGCGTGGCTAGTGCTCCAGGGCTCGGCTCAAACATGAACTTGCTGCAAGCACTTTCAAACCAACATACCGATGGATTTGGGCAACTCTACAGGGAAGGCACAGCTTCTTTGCTGAACTCCATGGTTAGCAAGAGGTTCAGTTACAGCACCACCCAAGTCAAGAACAATTTTGCTACAGCACTCAGCTCAGACGGCGCTGCAGCAGCTCAGGCTCAGTTGTTCAAGTTAGCCAACCAGGGTCGGCTCAAGCCCAGAGCTTGAAAAGTCATTTTCACAATTATCATCAATATCTTGTTATTTCTAGTTCTTTATGATATTTTGTGTGTTTACTTTAGGATTAATGTTTATCTGCTTGTCGTTAACAAAATTATGTTCTTTCTGTTTGCTTTTGAATCTTACAAAATCAAGAGGATACCAACCTTCATTGTTTAATCAGTTATCAGTAAAACATTTCTTGTTGTATTACAAGTGTGA</gDNA_template>
            <first_frame> F  S  I  S  P  F  I  R  S  L  L  S  L  S  A  S  L  R  S  K  P  S  W  Q  N  R  E  A  T  R  V  L  E  F  C  G  P  H  L  L  H  C  S  C  R  I  W  S  F  P  S  C  L  L  L  H  L  K  K  R  K  T  T  T  H  L  I  H  I  L  E  V  H  Q  Q  :  V  Q  A  H  H  P  I  M  Q  L  H  L  M  E  A  V  A  M  K  A  N  H  Q  Q  T  V  A  T  L  Q  K  E  G  S  I  M  T  L  P  Q  L  L  L  Q  V  A  T  I  P  T  L  Q  V  H  L  H  L  H  L  V  P  H  P  H  P  L  L  *  P  H  Q  L  L  L  S  L  T  L  A  L  Q  A  L  L  L  P  Q  H  H  H  L  L  L  H  A   : I  T  G  G  L  T  Q  D  *  Y  G  A  C  L  V  G  G  E  M  L  V  V  H  L  A  W  L  V  L  Q  G  S  A  Q  T  *  T  C  C  K  H  F  Q  T  N  I  P  M  D  L  G  N  S  T  G  K  A  Q  L  L  C  *  T  P  W  L  A  R  G  S  V  T  A  P  P  K  S  R  T  I  L  L  Q  H  S  A  Q  T  A  L  Q  Q  L  R  L  S  C  S  S  *  P  T  R  V  G  S  S  P  E  L  E  K  S  F  S  Q  L  S  S  I  S  C  Y  F  *  F  F  M  I  F  C  V  F  T  L  G  L  M  F  I  C  L  S  L  T  K  L  C  S  F  C  L  L  L  N  L  T  K  S  R  G  Y  Q  P  S  L  F  N  Q  L  S  V  K  H  F  L  L  Y  Y  K  C   </first_frame>
            <second_frame>  S  P  S  L  P  S  F  V  L  F  Y  L  C  Q  P  P  *  E  A  N  H  H  G  K  T  E  K  Q  P  E  F  S  N  S  V  G  R  I  C  C  T  A  L  A  E  F  G  H  S  R  R  V  F  C  F  I  *  R  R  E  K  L  L  H  T  *  S  T  Y  W  K  S  T  N  R :   F  K  H  T  T  L  S  C  N  S  I  S  W  K  Q  *  P  *  K  Q  T  T  S  K  L  W  Q  P  S  K  R  R  A  A  S  *  P  Y  P  S  F  S  F  R  W  L  L  S  P  P  S  K  Y  T  Y  T  Y  T  *  Y  P  I  H  T  H  Y  C  N  P  T  N  Y  S  Y  H  *  P  W  H  S  K  H  S  C  Y  P  N  T  I  T  S  F  Y  M  R  :  L  L  E  D  S  P  R  T  D  M  G  L  V  W  L  V  G  K  C  W  *  C  I  W  R  G  *  C  S  R  A  R  L  K  H  E  L  A  A  S  T  F  K  P  T  Y  R  W  I  W  A  T  L  Q  G  R  H  S  F  F  A  E  L  H  G  *  Q  E  V  Q  L  Q  H  H  P  S  Q  E  Q  F  C  Y  S  T  Q  L  R  R  R  C  S  S  S  G  S  V  V  Q  V  S  Q  P  G  S  A  Q  A  Q  S  L  K  S  H  F  H  N  Y  H  Q  Y  L  V  I  S  S  S  L  *  Y  F  V  C  L  L  *  D  *  C  L  S  A  C  R  *  Q  N  Y  V  L  S  V  C  F  *  I  L  Q  N  Q  E  D  T  N  L  H  C  L  I  S  Y  Q  *  N  I  S  C  C  I  T  S  V  </second_frame>
            <third_frame>   L  H  L  S  L  H  S  F  S  F  I  S  V  S  L  L  E  K  Q  T  I  M  A  K  Q  R  S  N  Q  S  S  R  I  L  W  A  A  F  A  A  L  L  L  Q  N  L  V  I  P  V  V  S  F  A  S  F  E  E  E  K  N  Y  Y  T  P  D  P  H  T  G  S  P  P  T   : G  S  S  T  P  P  Y  H  A  T  P  S  H  G  S  S  S  H  E  S  K  P  P  A  N  C  G  N  P  P  K  G  G  Q  H  H  D  P  T  P  A  S  P  S  G  G  Y  Y  P  H  P  P  S  T  P  T  P  T  P  S  T  P  S  T  P  T  I  V  T  P  P  T  T  P  I  I  D  P  G  T  P  S  T  P  A  T  P  T  P  S  P  P  F  T  C  D :   Y  W  R  T  H  P  G  L  I  W  G  L  F  G  W  W  G  N  V  G  S  A  F  G  V  A  S  A  P  G  L  G  S  N  M  N  L  L  Q  A  L  S  N  Q  H  T  D  G  F  G  Q  L  Y  R  E  G  T  A  S  L  L  N  S  M  V  S  K  R  F  S  Y  S  T  T  Q  V  K  N  N  F  A  T  A  L  S  S  D  G  A  A  A  A  Q  A  Q  L  F  K  L  A  N  Q  G  R  L  K  P  R  A  *  K  V  I  F  T  I  I  I  N  I  L  L  F  L  V  L  Y  D  I  L  C  V  Y  F  R  I  N  V  Y  L  L  V  V  N  K  I  M  F  F  L  F  A  F  E  S  Y  K  I  K  R  I  P  T  F  I  V  *  S  V  I  S  K  T  F  L  V  V  L  Q  V  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26560" stop="26338"/>
                    <exon start="25943" stop="25658"/>
                    <exon start="25210" stop="24880"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHLSLHSFSFISVSLLEKQTIMAKQRSNQSSRILWAAFAALLLQNLVIPVVSFASFEEEKNYYTPDPHTGSPPTGSSTPPYHATPSHGSSSHESKPPANCGNPPKGGQHHDPTPASPSGGYYPHPPSTPTPTPSTPSTPTIVTPPTTPIIDPGTPSTPATPTPSPPFTCDYWRTHPGLIWGLFGWWGNVGSAFGVASAPGLGSNMNLLQALSNQHTDGFGQLYREGTASLLNSMVSKRFSYSTTQVKNNFATALSSDGAAAAQAQLFKLANQGRLKPRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="37370" PGL_stop="34604"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37370" e_stop="37274"/>
            <exon e_start="34945" e_stop="34604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.973" e_score="0.918"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="37370" e_stop="37274" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.973">
            <gDNA_intron_boundary i_start="37273" i_stop="34946" i_length="2328"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="34945" e_stop="34604" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37370" stop="37274"/>
              <exon start="34945" stop="34604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGTTTACAGACATAGTTTATGGTAACAGAAATGGTTTTCTTACTATTTTGACAGAGCCATTAAGTTGTGCAGAAGAACCATTAATTGTACAGCAG : GTCAGGGTACTTGAGGTGGCTCTTGTGAACAGATGGTCTAGCCAGGGGATGAAGCCAACCACTCACACACTTCTTCCTGATTGCCAGCAGTGTGTAAAAGACGATCCGCTTTAGGTTTTTTTTCTTTAGATGAAGAAGTGAGAAACAGTCATCTCCTCCCCACCTCCACCCTCTCAAGGAAAAGAAAACAGCCCCACCATGAACAACAATTTTTGTTACAGACACAAATAATTATACAGGAATATTTCCATGGGTTTGCTTCTTGTGTCTGGAATCTAATAACAATGCTGTATCAATCATTTCGTCATTTGTTTGACTGAATTATAGAAGAACTTTCCCTTT</gDNA_template>
            <first_frame> A  V  Y  R  H  S  L  W  *  Q  K  W  F  S  Y  Y  F  D  R  A  I  K  L  C  R  R  T  I  N  C  T  A   : G  Q  G  T  *  G  G  S  C  E  Q  M  V  *  P  G  D  E  A  N  H  S  H  T  S  S  *  L  P  A  V  C  K  R  R  S  A  L  G  F  F  S  L  D  E  E  V  R  N  S  H  L  L  P  T  S  T  L  S  R  K  R  K  Q  P  H  H  E  Q  Q  F  L  L  Q  T  Q  I  I  I  Q  E  Y  F  H  G  F  A  S  C  V  W  N  L  I  T  M  L  Y  Q  S  F  R  H  L  F  D  *  I  I  E  E  L  S  L  </first_frame>
            <second_frame>  P  F  T  D  I  V  Y  G  N  R  N  G  F  L  T  I  L  T  E  P  L  S  C  A  E  E  P  L  I  V  Q  Q  :  V  R  V  L  E  V  A  L  V  N  R  W  S  S  Q  G  M  K  P  T  T  H  T  L  L  P  D  C  Q  Q  C  V  K  D  D  P  L  *  V  F  F  L  *  M  K  K  *  E  T  V  I  S  S  P  P  P  P  S  Q  G  K  E  N  S  P  T  M  N  N  N  F  C  Y  R  H  K  *  L  Y  R  N  I  S  M  G  L  L  L  V  S  G  I  *  *  Q  C  C  I  N  H  F  V  I  C  L  T  E  L  *  K  N  F  P  F </second_frame>
            <third_frame>   R  L  Q  T  *  F  M  V  T  E  M  V  F  L  L  F  *  Q  S  H  *  V  V  Q  K  N  H  *  L  Y  S  R :   S  G  Y  L  R  W  L  L  *  T  D  G  L  A  R  G  *  S  Q  P  L  T  H  F  F  L  I  A  S  S  V  *  K  T  I  R  F  R  F  F  F  F  R  *  R  S  E  K  Q  S  S  P  P  H  L  H  P  L  K  E  K  K  T  A  P  P  *  T  T  I  F  V  T  D  T  N  N  Y  T  G  I  F  P  W  V  C  F  L  C  L  E  S  N  N  N  A  V  S  I  I  S  S  F  V  *  L  N  Y  R  R  T  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34865" stop="34626"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPAVCKRRSALGFFSLDEEVRNSHLLPTSTLSRKRKQPHHEQQFLLQTQIIIQEYFHGFASCVWNLITMLYQSFRHLFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37369" stop="37274"/>
                    <exon start="34945" stop="34832"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFTDIVYGNRNGFLTILTEPLSCAEEPLIVQQVRVLEVALVNRWSSQGMKPTTHTLLPDCQQCVKDDPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="38754" PGL_stop="37879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38754" e_stop="38039"/>
            <exon e_start="37950" e_stop="37879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.706" acc_prob="0.997" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="38754" e_stop="38039" e_length="716"/>
          </exon>
          <intron i_serial="1" don_prob="0.706" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38038" i_stop="37951" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37950" e_stop="37879" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38754" stop="38121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38751" stop="38318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38747" stop="38191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38685" stop="38124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38666" stop="38039"/>
              <exon start="37950" stop="37879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38663" stop="38293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAATCGATGAATACAATAATTGTTATTATAATATATAAAACCCATAACCAATACCAGATTTGAGCTCTGATTATGCAGTCTACCTCAATTACTCCACTCCATACTTGCCCAATTCTTAGCCATTTTCACTCCATTAATCTCAACAACAACAAGAAAAGTTTGAAGCTTTCTATCAGAAAATCAAAGTGTTGTTGTTTTACTCTCAGTTCTACACATAGTTGCTGCAAAGACCAAGAAAAACCCCAAAACAATAGCTACAGTATCGACCCAGATCGACAGAAGAACCCCATAATAAATTGGGAAGAATTTATTCTTCTATTCAAGAACAAGAAGAGATAACCCAGTACAACGAGGAGGAGGAAGAAGAAGAGCCGGAATTTGAGCTTCCAGATCATTCAGGCATTAGAACAAACATGTGGTGGACTGAACTGAAAGCTGCATTGGGTCAGAGGATTAATGTGGAAGGGATTGTTTCTTCATTAGGGGTTTTCTCTAAAGACAAGCATTTGGCGATCCCACATGTTAGTGTGCCGGATATAAGGTATATTGATTGGGCTGAGCTAAAGAAAAGAGGGTTTGAAGGTGTGGTGTTTGATAAGGATAATACCATTACTGTTCCTTATTCTTTGAGCTTGTGGTCTCCTTTAGCTTCTTCTATTGATCAGTGCAAATCTCTGTTTGGTAACAATATTGCAGTGTATAGCAACTCAGCAG : GATTAGATGAATATGACCCTGATGGTAGAAAGGCCAGAATTCTCGAACGTGCTATTGGAATTAAAGTCATTA</gDNA_template>
            <first_frame> C  N  R  *  I  Q  *  L  L  L  *  Y  I  K  P  I  T  N  T  R  F  E  L  *  L  C  S  L  P  Q  L  L  H  S  I  L  A  Q  F  L  A  I  F  T  P  L  I  S  T  T  T  R  K  V  *  S  F  L  S  E  N  Q  S  V  V  V  L  L  S  V  L  H  I  V  A  A  K  T  K  K  N  P  K  T  I  A  T  V  S  T  Q  I  D  R  R  T  P  *  *  I  G  K  N  L  F  F  Y  S  R  T  R  R  D  N  P  V  Q  R  G  G  G  R  R  R  A  G  I  *  A  S  R  S  F  R  H  *  N  K  H  V  V  D  *  T  E  S  C  I  G  S  E  D  *  C  G  R  D  C  F  F  I  R  G  F  L  *  R  Q  A  F  G  D  P  T  C  *  C  A  G  Y  K  V  Y  *  L  G  *  A  K  E  K  R  V  *  R  C  G  V  *  *  G  *  Y  H  Y  C  S  L  F  F  E  L  V  V  S  F  S  F  F  Y  *  S  V  Q  I  S  V  W  *  Q  Y  C  S  V  *  Q  L  S  R :   I  R  *  I  *  P  *  W  *  K  G  Q  N  S  R  T  C  Y  W  N  *  S  H   </first_frame>
            <second_frame>  V  I  D  E  Y  N  N  C  Y  Y  N  I  *  N  P  *  P  I  P  D  L  S  S  D  Y  A  V  Y  L  N  Y  S  T  P  Y  L  P  N  S  *  P  F  S  L  H  *  S  Q  Q  Q  Q  E  K  F  E  A  F  Y  Q  K  I  K  V  L  L  F  Y  S  Q  F  Y  T  *  L  L  Q  R  P  R  K  T  P  K  Q  *  L  Q  Y  R  P  R  S  T  E  E  P  H  N  K  L  G  R  I  Y  S  S  I  Q  E  Q  E  E  I  T  Q  Y  N  E  E  E  E  E  E  E  P  E  F  E  L  P  D  H  S  G  I  R  T  N  M  W  W  T  E  L  K  A  A  L  G  Q  R  I  N  V  E  G  I  V  S  S  L  G  V  F  S  K  D  K  H  L  A  I  P  H  V  S  V  P  D  I  R  Y  I  D  W  A  E  L  K  K  R  G  F  E  G  V  V  F  D  K  D  N  T  I  T  V  P  Y  S  L  S  L  W  S  P  L  A  S  S  I  D  Q  C  K  S  L  F  G  N  N  I  A  V  Y  S  N  S  A   : G  L  D  E  Y  D  P  D  G  R  K  A  R  I  L  E  R  A  I  G  I  K  V  I  </second_frame>
            <third_frame>   *  S  M  N  T  I  I  V  I  I  I  Y  K  T  H  N  Q  Y  Q  I  *  A  L  I  M  Q  S  T  S  I  T  P  L  H  T  C  P  I  L  S  H  F  H  S  I  N  L  N  N  N  K  K  S  L  K  L  S  I  R  K  S  K  C  C  C  F  T  L  S  S  T  H  S  C  C  K  D  Q  E  K  P  Q  N  N  S  Y  S  I  D  P  D  R  Q  K  N  P  I  I  N  W  E  E  F  I  L  L  F  K  N  K  K  R  *  P  S  T  T  R  R  R  K  K  K  S  R  N  L  S  F  Q  I  I  Q  A  L  E  Q  T  C  G  G  L  N  *  K  L  H  W  V  R  G  L  M  W  K  G  L  F  L  H  *  G  F  S  L  K  T  S  I  W  R  S  H  M  L  V  C  R  I  *  G  I  L  I  G  L  S  *  R  K  E  G  L  K  V  W  C  L  I  R  I  I  P  L  L  F  L  I  L  *  A  C  G  L  L  *  L  L  L  L  I  S  A  N  L  C  L  V  T  I  L  Q  C  I  A  T  Q  Q  :  D  *  M  N  M  T  L  M  V  E  R  P  E  F  S  N  V  L  L  E  L  K  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38498" stop="38039"/>
                    <exon start="37950" stop="37880"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQYRPRSTEEPHNKLGRIYSSIQEQEEITQYNEEEEEEEPEFELPDHSGIRTNMWWTELKAALGQRINVEGIVSSLGVFSKDKHLAIPHVSVPDIRYIDWAELKKRGFEGVVFDKDNTITVPYSLSLWSPLASSIDQCKSLFGNNIAVYSNSAGLDEYDPDGRKARILERAIGIKVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="46294" PGL_stop="48325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46294" e_stop="46587"/>
            <exon e_start="46679" e_stop="47293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46294" e_stop="46587" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46588" i_stop="46678" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46679" e_stop="47293" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46294" stop="46587"/>
              <exon start="46679" stop="46869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46295" stop="46587"/>
              <exon start="46679" stop="46888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46297" stop="46587"/>
              <exon start="46679" stop="46753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46306" stop="46587"/>
              <exon start="46679" stop="46846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46585" stop="46587"/>
              <exon start="46679" stop="47293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46585" stop="46587"/>
              <exon start="46679" stop="47277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTTCAGCTAATTTGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTT : CTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGTGTAAGGCGCTATACTTGTACGTAATTTTTTTTCAAAAAAAATGACATATTTCTTATATGAACTTTTCATTTACCCATTTATTCATGATTATAGTCTCACACAAATAATAAAGCATATTTAAAATGGCATGTTTCGGAGGTCGCTACTAAAAAAGTGAATTTACAATGGATGAAATCCATTAAAAATTGAATCGACCGGACGTCCATGGAAACTCATATTTCTTTATTAGTATGATTTAGAGTCACACAAATTTATTACATATCTGATACTATAAGTTTTAAAAATCTTATTTTTTATCCTCAAACTTTGTCACAATCAAACTGCTCCACGTCAAGGGTGGATCTAGACTTCGAGTATCGATCATCACCTATAAGTTCACGTGAACTTAATAGTTTTTCAAAAGAATATAATAAATAGTAAT</gDNA_template>
            <first_frame> I  F  Q  L  I  *  K  K  M  A  N  S  H  L  L  L  I  S  I  V  L  M  G  N  L  V  A  V  L  A  A  G  N  F  N  D  L  T  E  I  T  W  G  D  G  R  G  K  I  L  D  G  G  K  G  L  S  L  S  L  D  N  Y  S  G  S  G  F  Q  S  K  N  E  Y  L  Y  G  R  F  D  M  Q  L  K  L  V  P  K  N  S  A  G  T  V  T  T  F  F  :  L  S  S  Q  G  E  G  H  D  E  I  D  F  E  F  L  G  N  V  T  G  E  P  Y  T  V  H  T  N  V  Y  S  Q  G  K  G  N  K  E  Q  Q  F  H  L  W  F  D  P  T  A  A  F  H  T  Y  T  I  V  W  N  A  N  R  I  V  *  G  A  I  L  V  R  N  F  F  S  K  K  M  T  Y  F  L  Y  E  L  F  I  Y  P  F  I  H  D  Y  S  L  T  Q  I  I  K  H  I  *  N  G  M  F  R  R  S  L  L  K  K  *  I  Y  N  G  *  N  P  L  K  I  E  S  T  G  R  P  W  K  L  I  F  L  Y  *  Y  D  L  E  S  H  K  F  I  T  Y  L  I  L  *  V  L  K  I  L  F  F  I  L  K  L  C  H  N  Q  T  A  P  R  Q  G  W  I  *  T  S  S  I  D  H  H  L  *  V  H  V  N  L  I  V  F  Q  K  N  I  I  N  S  N </first_frame>
            <second_frame>  Y  F  S  *  F  E  K  K  W  L  I  L  I  Y  F  *  F  P  L  Y  *  W  A  I  *  W  L  Y  *  Q  L  V  I  L  M  T  L  Q  K  S  L  G  V  M  D  V  V  K  Y  *  M  E  V  K  V  S  L  C  H  L  I  I  I  P  G  R  V  F  N  R  K  M  N  I  S  T  E  D  S  T  C  N  S  N  S  S  L  K  T  L  L  A  L  S  P  R  S  F :   Y  R  H  K  E  K  D  T  M  R  S  I  S  S  S  W  E  M  *  L  V  S  L  I  R  Y  T  P  M  F  I  L  K  E  K  E  T  K  N  N  N  F  T  F  G  S  I  Q  L  Q  H  F  T  L  T  P  L  F  G  T  L  T  A  *  C  K  A  L  Y  L  Y  V  I  F  F  Q  K  K  *  H  I  S  Y  M  N  F  S  F  T  H  L  F  M  I  I  V  S  H  K  *  *  S  I  F  K  M  A  C  F  G  G  R  Y  *  K  S  E  F  T  M  D  E  I  H  *  K  L  N  R  P  D  V  H  G  N  S  Y  F  F  I  S  M  I  *  S  H  T  N  L  L  H  I  *  Y  Y  K  F  *  K  S  Y  F  L  S  S  N  F  V  T  I  K  L  L  H  V  K  G  G  S  R  L  R  V  S  I  I  T  Y  K  F  T  *  T  *  *  F  F  K  R  I  *  *  I  V   </second_frame>
            <third_frame>   I  S  A  N  L  K  K  N  G  *  F  S  F  T  F  N  F  H  C  I  N  G  Q  F  S  G  C  I  S  S  W  *  F  *  *  P  Y  R  N  H  L  G  *  W  T  W  *  N  I  R  W  R  *  R  S  L  F  V  T  *  *  L  F  R  V  G  F  S  I  E  K  *  I  S  L  R  K  I  R  H  A  T  Q  T  R  P  *  K  L  C  W  H  C  H  H  V  L   : S  I  V  T  R  R  R  T  R  *  D  R  F  R  V  L  G  K  C  D  W  *  A  L  Y  G  T  H  Q  C  L  F  S  R  K  R  K  Q  R  T  T  I  S  P  L  V  R  S  N  C  S  I  S  H  L  H  H  C  L  E  R  *  P  H  S  V  R  R  Y  T  C  T  *  F  F  F  K  K  N  D  I  F  L  I  *  T  F  H  L  P  I  Y  S  *  L  *  S  H  T  N  N  K  A  Y  L  K  W  H  V  S  E  V  A  T  K  K  V  N  L  Q  W  M  K  S  I  K  N  *  I  D  R  T  S  M  E  T  H  I  S  L  L  V  *  F  R  V  T  Q  I  Y  Y  I  S  D  T  I  S  F  K  N  L  I  F  Y  P  Q  T  L  S  Q  S  N  C  S  T  S  R  V  D  L  D  F  E  Y  R  S  S  P  I  S  S  R  E  L  N  S  F  S  K  E  Y  N  K  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46312" stop="46587"/>
                    <exon start="46679" stop="46876"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMANSHLLLISIVLMGNLVAVLAAGNFNDLTEITWGDGRGKILDGGKGLSLSLDNYSGSGFQSKNEYLYGRFDMQLKLVPKNSAGTVTTFFLSSQGEGHDEIDFEFLGNVTGEPYTVHTNVYSQGKGNKEQQFHLWFDPTAAFHTYTIVWNANRIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46294" e_stop="46587"/>
            <exon e_start="46679" e_stop="46872"/>
            <exon e_start="47642" e_stop="48325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46294" e_stop="46587" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46588" i_stop="46678" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46679" e_stop="46872" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46873" i_stop="47641" i_length="769"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="47642" e_stop="48325" e_length="684"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46294" stop="46587"/>
              <exon start="46679" stop="46869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46297" stop="46587"/>
              <exon start="46679" stop="46753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46306" stop="46587"/>
              <exon start="46679" stop="46872"/>
              <exon start="47642" stop="47890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46306" stop="46587"/>
              <exon start="46679" stop="46846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46717" stop="46872"/>
              <exon start="47642" stop="48125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47976" stop="48325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393321" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTTCAGCTAATTTGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTT : CTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGT : GTTTTTGGTGGATCAGATTCCAATTAGAGTATACAACAACCATGAGAGCATTGGAATTGCATACCCCAAAAGTCAACCAATGAAAGTCTATTGTAGTTTATGGAATGCAGATGAATGGGCTACACAAGGTGGTAGAGTCAAAACTGATTGGTCACAAGCACCATTTACTGCCTATTATAGGAACATTAACATTGATGGCTGCGTCGTTAAATCAGGCGCTTCCTCATGTGCCTCACGGTCTACTGAATCCACGAACAGTGCTAAGTCGTGGGAGACACATGAGCTTGATGCTAAGGGTCGGAACAGGGTCCGATGGGTACAGAGCAAACATATGGTTTATAATTATTGCGCGGATTCTAAGAGGTTTCCTCAAGGATATTCACAAGAGTGTAAACGATCAAGGTTTTAAAAAATCGAATTTAATTTAATTACGTATGGTTCGAAACTCGATGAATATGTAAGCTGGTTATGCGATTGATTGTTTTTGTGTGTGAAATTCTTTATTGTTTTGTTTTGTTGTATTACCAATAAAATAAAAGGTTGCTTATTTATTTTTTTTGATTAAATGATATATGTACTATTCAAGTTTTATACTTTTGTAGTGGGAGAATACCGTCAATCCCTTTATCTAAATTAATGAATATTTTTTCCCTTTAATGAGTTCTAATGGGAGCAAAAATTGAA</gDNA_template>
            <first_frame> I  F  Q  L  I  *  K  K  M  A  N  S  H  L  L  L  I  S  I  V  L  M  G  N  L  V  A  V  L  A  A  G  N  F  N  D  L  T  E  I  T  W  G  D  G  R  G  K  I  L  D  G  G  K  G  L  S  L  S  L  D  N  Y  S  G  S  G  F  Q  S  K  N  E  Y  L  Y  G  R  F  D  M  Q  L  K  L  V  P  K  N  S  A  G  T  V  T  T  F  F  :  L  S  S  Q  G  E  G  H  D  E  I  D  F  E  F  L  G  N  V  T  G  E  P  Y  T  V  H  T  N  V  Y  S  Q  G  K  G  N  K  E  Q  Q  F  H  L  W  F  D  P  T  A  A  F  H  T  Y  T  I  V  W  N  A  N  R  I  V :   F  L  V  D  Q  I  P  I  R  V  Y  N  N  H  E  S  I  G  I  A  Y  P  K  S  Q  P  M  K  V  Y  C  S  L  W  N  A  D  E  W  A  T  Q  G  G  R  V  K  T  D  W  S  Q  A  P  F  T  A  Y  Y  R  N  I  N  I  D  G  C  V  V  K  S  G  A  S  S  C  A  S  R  S  T  E  S  T  N  S  A  K  S  W  E  T  H  E  L  D  A  K  G  R  N  R  V  R  W  V  Q  S  K  H  M  V  Y  N  Y  C  A  D  S  K  R  F  P  Q  G  Y  S  Q  E  C  K  R  S  R  F  *  K  I  E  F  N  L  I  T  Y  G  S  K  L  D  E  Y  V  S  W  L  C  D  *  L  F  L  C  V  K  F  F  I  V  L  F  C  C  I  T  N  K  I  K  G  C  L  F  I  F  F  D  *  M  I  Y  V  L  F  K  F  Y  T  F  V  V  G  E  Y  R  Q  S  L  Y  L  N  *  *  I  F  F  P  F  N  E  F  *  W  E  Q  K  L   </first_frame>
            <second_frame>  Y  F  S  *  F  E  K  K  W  L  I  L  I  Y  F  *  F  P  L  Y  *  W  A  I  *  W  L  Y  *  Q  L  V  I  L  M  T  L  Q  K  S  L  G  V  M  D  V  V  K  Y  *  M  E  V  K  V  S  L  C  H  L  I  I  I  P  G  R  V  F  N  R  K  M  N  I  S  T  E  D  S  T  C  N  S  N  S  S  L  K  T  L  L  A  L  S  P  R  S  F :   Y  R  H  K  E  K  D  T  M  R  S  I  S  S  S  W  E  M  *  L  V  S  L  I  R  Y  T  P  M  F  I  L  K  E  K  E  T  K  N  N  N  F  T  F  G  S  I  Q  L  Q  H  F  T  L  T  P  L  F  G  T  L  T  A  *   : C  F  W  W  I  R  F  Q  L  E  Y  T  T  T  M  R  A  L  E  L  H  T  P  K  V  N  Q  *  K  S  I  V  V  Y  G  M  Q  M  N  G  L  H  K  V  V  E  S  K  L  I  G  H  K  H  H  L  L  P  I  I  G  T  L  T  L  M  A  A  S  L  N  Q  A  L  P  H  V  P  H  G  L  L  N  P  R  T  V  L  S  R  G  R  H  M  S  L  M  L  R  V  G  T  G  S  D  G  Y  R  A  N  I  W  F  I  I  I  A  R  I  L  R  G  F  L  K  D  I  H  K  S  V  N  D  Q  G  F  K  K  S  N  L  I  *  L  R  M  V  R  N  S  M  N  M  *  A  G  Y  A  I  D  C  F  C  V  *  N  S  L  L  F  C  F  V  V  L  P  I  K  *  K  V  A  Y  L  F  F  L  I  K  *  Y  M  Y  Y  S  S  F  I  L  L  *  W  E  N  T  V  N  P  F  I  *  I  N  E  Y  F  F  P  L  M  S  S  N  G  S  K  N  *  </second_frame>
            <third_frame>   I  S  A  N  L  K  K  N  G  *  F  S  F  T  F  N  F  H  C  I  N  G  Q  F  S  G  C  I  S  S  W  *  F  *  *  P  Y  R  N  H  L  G  *  W  T  W  *  N  I  R  W  R  *  R  S  L  F  V  T  *  *  L  F  R  V  G  F  S  I  E  K  *  I  S  L  R  K  I  R  H  A  T  Q  T  R  P  *  K  L  C  W  H  C  H  H  V  L   : S  I  V  T  R  R  R  T  R  *  D  R  F  R  V  L  G  K  C  D  W  *  A  L  Y  G  T  H  Q  C  L  F  S  R  K  R  K  Q  R  T  T  I  S  P  L  V  R  S  N  C  S  I  S  H  L  H  H  C  L  E  R  *  P  H  S  :  V  F  G  G  S  D  S  N  *  S  I  Q  Q  P  *  E  H  W  N  C  I  P  Q  K  S  T  N  E  S  L  L  *  F  M  E  C  R  *  M  G  Y  T  R  W  *  S  Q  N  *  L  V  T  S  T  I  Y  C  L  L  *  E  H  *  H  *  W  L  R  R  *  I  R  R  F  L  M  C  L  T  V  Y  *  I  H  E  Q  C  *  V  V  G  D  T  *  A  *  C  *  G  S  E  Q  G  P  M  G  T  E  Q  T  Y  G  L  *  L  L  R  G  F  *  E  V  S  S  R  I  F  T  R  V  *  T  I  K  V  L  K  N  R  I  *  F  N  Y  V  W  F  E  T  R  *  I  C  K  L  V  M  R  L  I  V  F  V  C  E  I  L  Y  C  F  V  L  L  Y  Y  Q  *  N  K  R  L  L  I  Y  F  F  *  L  N  D  I  C  T  I  Q  V  L  Y  F  C  S  G  R  I  P  S  I  P  L  S  K  L  M  N  I  F  S  L  *  *  V  L  M  G  A  K  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46312" stop="46587"/>
                    <exon start="46679" stop="46872"/>
                    <exon start="47642" stop="48050"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMANSHLLLISIVLMGNLVAVLAAGNFNDLTEITWGDGRGKILDGGKGLSLSLDNYSGSGFQSKNEYLYGRFDMQLKLVPKNSAGTVTTFFLSSQGEGHDEIDFEFLGNVTGEPYTVHTNVYSQGKGNKEQQFHLWFDPTAAFHTYTIVWNANRIVFLVDQIPIRVYNNHESIGIAYPKSQPMKVYCSLWNADEWATQGGRVKTDWSQAPFTAYYRNINIDGCVVKSGASSCASRSTESTNSAKSWETHELDAKGRNRVRWVQSKHMVYNYCADSKRFPQGYSQECKRSRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="46294" e_stop="46587"/>
            <exon e_start="46679" e_stop="46888"/>
            <exon e_start="47642" e_stop="47707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46294" e_stop="46587" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46588" i_stop="46678" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46679" e_stop="46888" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46889" i_stop="47641" i_length="753"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47642" e_stop="47707" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46294" stop="46587"/>
              <exon start="46679" stop="46869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46295" stop="46587"/>
              <exon start="46679" stop="46888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46296" stop="46587"/>
              <exon start="46679" stop="46888"/>
              <exon start="47642" stop="47707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46297" stop="46587"/>
              <exon start="46679" stop="46753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46306" stop="46587"/>
              <exon start="46679" stop="46846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203901" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTTCAGCTAATTTGAAAAAAAATGGCTAATTCTCATTTACTTTTAATTTCCATTGTATTAATGGGCAATTTAGTGGCTGTATTAGCAGCTGGTAATTTTAATGACCTTACAGAAATCACTTGGGGTGATGGACGTGGTAAAATATTAGATGGAGGTAAAGGTCTCTCTTTGTCACTTGATAATTATTCCGGGTCGGGTTTTCAATCGAAAAATGAATATCTCTACGGAAGATTCGACATGCAACTCAAACTCGTCCCTAAAAACTCTGCTGGCACTGTCACCACGTTCTTT : CTATCGTCACAAGGAGAAGGACACGATGAGATCGATTTCGAGTTCTTGGGAAATGTGACTGGTGAGCCTTATACGGTACACACCAATGTTTATTCTCAAGGAAAAGGAAACAAAGAACAACAATTTCACCTTTGGTTCGATCCAACTGCAGCATTTCACACTTACACCATTGTTTGGAACGCTAACCGCATAGTGTAAGGCGCTATACTT : GTTTTTGGTGGATCAGATTCCAATTAGAGTATACAACAACCATGAGAGCATTGGAATTGCATACCC</gDNA_template>
            <first_frame> I  F  Q  L  I  *  K  K  M  A  N  S  H  L  L  L  I  S  I  V  L  M  G  N  L  V  A  V  L  A  A  G  N  F  N  D  L  T  E  I  T  W  G  D  G  R  G  K  I  L  D  G  G  K  G  L  S  L  S  L  D  N  Y  S  G  S  G  F  Q  S  K  N  E  Y  L  Y  G  R  F  D  M  Q  L  K  L  V  P  K  N  S  A  G  T  V  T  T  F  F  :  L  S  S  Q  G  E  G  H  D  E  I  D  F  E  F  L  G  N  V  T  G  E  P  Y  T  V  H  T  N  V  Y  S  Q  G  K  G  N  K  E  Q  Q  F  H  L  W  F  D  P  T  A  A  F  H  T  Y  T  I  V  W  N  A  N  R  I  V  *  G  A  I  L  :  V  F  G  G  S  D  S  N  *  S  I  Q  Q  P  *  E  H  W  N  C  I  P </first_frame>
            <second_frame>  Y  F  S  *  F  E  K  K  W  L  I  L  I  Y  F  *  F  P  L  Y  *  W  A  I  *  W  L  Y  *  Q  L  V  I  L  M  T  L  Q  K  S  L  G  V  M  D  V  V  K  Y  *  M  E  V  K  V  S  L  C  H  L  I  I  I  P  G  R  V  F  N  R  K  M  N  I  S  T  E  D  S  T  C  N  S  N  S  S  L  K  T  L  L  A  L  S  P  R  S  F :   Y  R  H  K  E  K  D  T  M  R  S  I  S  S  S  W  E  M  *  L  V  S  L  I  R  Y  T  P  M  F  I  L  K  E  K  E  T  K  N  N  N  F  T  F  G  S  I  Q  L  Q  H  F  T  L  T  P  L  F  G  T  L  T  A  *  C  K  A  L  Y  L :   F  L  V  D  Q  I  P  I  R  V  Y  N  N  H  E  S  I  G  I  A  Y   </second_frame>
            <third_frame>   I  S  A  N  L  K  K  N  G  *  F  S  F  T  F  N  F  H  C  I  N  G  Q  F  S  G  C  I  S  S  W  *  F  *  *  P  Y  R  N  H  L  G  *  W  T  W  *  N  I  R  W  R  *  R  S  L  F  V  T  *  *  L  F  R  V  G  F  S  I  E  K  *  I  S  L  R  K  I  R  H  A  T  Q  T  R  P  *  K  L  C  W  H  C  H  H  V  L   : S  I  V  T  R  R  R  T  R  *  D  R  F  R  V  L  G  K  C  D  W  *  A  L  Y  G  T  H  Q  C  L  F  S  R  K  R  K  Q  R  T  T  I  S  P  L  V  R  S  N  C  S  I  S  H  L  H  H  C  L  E  R  *  P  H  S  V  R  R  Y  T   : C  F  W  W  I  R  F  Q  L  E  Y  T  T  T  M  R  A  L  E  L  H  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46312" stop="46587"/>
                    <exon start="46679" stop="46876"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMANSHLLLISIVLMGNLVAVLAAGNFNDLTEITWGDGRGKILDGGKGLSLSLDNYSGSGFQSKNEYLYGRFDMQLKLVPKNSAGTVTTFFLSSQGEGHDEIDFEFLGNVTGEPYTVHTNVYSQGKGNKEQQFHLWFDPTAAFHTYTIVWNANRIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="47607" e_stop="48325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="47607" e_stop="48325" e_length="719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47607" stop="48305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47976" stop="48325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393321" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTAGATACTTACATGTTTGATTATGAAAATCAGGTTTTTGGTGGATCAGATTCCAATTAGAGTATACAACAACCATGAGAGCATTGGAATTGCATACCCCAAAAGTCAACCAATGAAAGTCTATTGTAGTTTATGGAATGCAGATGAATGGGCTACACAAGGTGGTAGAGTCAAAACTGATTGGTCACAAGCACCATTTACTGCCTATTATAGGAACATTAACATTGATGGCTGCGTCGTTAAATCAGGCGCTTCCTCATGTGCCTCACGGTCTACTGAATCCACGAACAGTGCTAAGTCGTGGGAGACACATGAGCTTGATGCTAAGGGTCGGAACAGGGTCCGATGGGTACAGAGCAAACATATGGTTTATAATTATTGCGCGGATTCTAAGAGGTTTCCTCAAGGATATTCACAAGAGTGTAAACGATCAAGGTTTTAAAAAATCGAATTTAATTTAATTACGTATGGTTCGAAACTCGATGAATATGTAAGCTGGTTATGCGATTGATTGTTTTTGTGTGTGAAATTCTTTATTGTTTTGTTTTGTTGTATTACCAATAAAATAAAAGGTTGCTTATTTATTTTTTTTGATTAAATGATATATGTACTATTCAAGTTTTATACTTTTGTAGTGGGAGAATACCGTCAATCCCTTTATCTAAATTAATGAATATTTTTTCCCTTTAATGAGTTCTAATGGGAGCAAAAATTGAA</gDNA_template>
            <first_frame> W  *  I  L  T  C  L  I  M  K  I  R  F  L  V  D  Q  I  P  I  R  V  Y  N  N  H  E  S  I  G  I  A  Y  P  K  S  Q  P  M  K  V  Y  C  S  L  W  N  A  D  E  W  A  T  Q  G  G  R  V  K  T  D  W  S  Q  A  P  F  T  A  Y  Y  R  N  I  N  I  D  G  C  V  V  K  S  G  A  S  S  C  A  S  R  S  T  E  S  T  N  S  A  K  S  W  E  T  H  E  L  D  A  K  G  R  N  R  V  R  W  V  Q  S  K  H  M  V  Y  N  Y  C  A  D  S  K  R  F  P  Q  G  Y  S  Q  E  C  K  R  S  R  F  *  K  I  E  F  N  L  I  T  Y  G  S  K  L  D  E  Y  V  S  W  L  C  D  *  L  F  L  C  V  K  F  F  I  V  L  F  C  C  I  T  N  K  I  K  G  C  L  F  I  F  F  D  *  M  I  Y  V  L  F  K  F  Y  T  F  V  V  G  E  Y  R  Q  S  L  Y  L  N  *  *  I  F  F  P  F  N  E  F  *  W  E  Q  K  L   </first_frame>
            <second_frame>  G  R  Y  L  H  V  *  L  *  K  S  G  F  W  W  I  R  F  Q  L  E  Y  T  T  T  M  R  A  L  E  L  H  T  P  K  V  N  Q  *  K  S  I  V  V  Y  G  M  Q  M  N  G  L  H  K  V  V  E  S  K  L  I  G  H  K  H  H  L  L  P  I  I  G  T  L  T  L  M  A  A  S  L  N  Q  A  L  P  H  V  P  H  G  L  L  N  P  R  T  V  L  S  R  G  R  H  M  S  L  M  L  R  V  G  T  G  S  D  G  Y  R  A  N  I  W  F  I  I  I  A  R  I  L  R  G  F  L  K  D  I  H  K  S  V  N  D  Q  G  F  K  K  S  N  L  I  *  L  R  M  V  R  N  S  M  N  M  *  A  G  Y  A  I  D  C  F  C  V  *  N  S  L  L  F  C  F  V  V  L  P  I  K  *  K  V  A  Y  L  F  F  L  I  K  *  Y  M  Y  Y  S  S  F  I  L  L  *  W  E  N  T  V  N  P  F  I  *  I  N  E  Y  F  F  P  L  M  S  S  N  G  S  K  N  *  </second_frame>
            <third_frame>   V  D  T  Y  M  F  D  Y  E  N  Q  V  F  G  G  S  D  S  N  *  S  I  Q  Q  P  *  E  H  W  N  C  I  P  Q  K  S  T  N  E  S  L  L  *  F  M  E  C  R  *  M  G  Y  T  R  W  *  S  Q  N  *  L  V  T  S  T  I  Y  C  L  L  *  E  H  *  H  *  W  L  R  R  *  I  R  R  F  L  M  C  L  T  V  Y  *  I  H  E  Q  C  *  V  V  G  D  T  *  A  *  C  *  G  S  E  Q  G  P  M  G  T  E  Q  T  Y  G  L  *  L  L  R  G  F  *  E  V  S  S  R  I  F  T  R  V  *  T  I  K  V  L  K  N  R  I  *  F  N  Y  V  W  F  E  T  R  *  I  C  K  L  V  M  R  L  I  V  F  V  C  E  I  L  Y  C  F  V  L  L  Y  Y  Q  *  N  K  R  L  L  I  Y  F  F  *  L  N  D  I  C  T  I  Q  V  L  Y  F  C  S  G  R  I  P  S  I  P  L  S  K  L  M  N  I  F  S  L  *  *  V  L  M  G  A  K  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47613" stop="48050"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILTCLIMKIRFLVDQIPIRVYNNHESIGIAYPKSQPMKVYCSLWNADEWATQGGRVKTDWSQAPFTAYYRNINIDGCVVKSGASSCASRSTESTNSAKSWETHELDAKGRNRVRWVQSKHMVYNYCADSKRFPQGYSQECKRSRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="48475" PGL_stop="47727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48475" e_stop="48424"/>
            <exon e_start="48139" e_stop="47727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.538"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.538">
            <gDNA_exon_boundary e_start="48475" e_stop="48424" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48423" i_stop="48140" i_length="284"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="48139" e_stop="47727" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48475" stop="48424"/>
              <exon start="48139" stop="47727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725177" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTTTTGTAGAGTATAATCTTTTATTTTTTTACATAATAATATTCCATAA : AATTTCACACACAAAAACAATCAATCGCATAACCAGCTTACATATTCATCGAGTTTCGAACCATACGTAATTAAATTAAATTCGATTTTTTAAAACCTTGATCGTTTACACTCTTGTGAATATCCTTGAGGAAACCTCTTAGAATCCGCGCAATAATTATAAACCATATGTTTGCTCTGTACCCATCGGACCCTGTTCCGACCCTTAGCATCAAGCTCATGTGTCTCCCACGACTTAGCACTGTTCGTGGATTCAGTAGACCGTGAGGCACATGAGGAAGCGCCTGATTTAACGACGCAGCCATCAATGTTAATGTTCCTATAATAGGCAGTAAATGGTGCTTGTGACCAATCAGTTTTGACTCTACCACCTTGTGTAGCCCATTCATCTGCATTCCATAAACTACAATAGAC</gDNA_template>
            <first_frame> I  F  L  *  S  I  I  F  Y  F  F  T  *  *  Y  S  I   : K  F  H  T  Q  K  Q  S  I  A  *  P  A  Y  I  F  I  E  F  R  T  I  R  N  *  I  K  F  D  F  L  K  P  *  S  F  T  L  L  *  I  S  L  R  K  P  L  R  I  R  A  I  I  I  N  H  M  F  A  L  Y  P  S  D  P  V  P  T  L  S  I  K  L  M  C  L  P  R  L  S  T  V  R  G  F  S  R  P  *  G  T  *  G  S  A  *  F  N  D  A  A  I  N  V  N  V  P  I  I  G  S  K  W  C  L  *  P  I  S  F  D  S  T  T  L  C  S  P  F  I  C  I  P  *  T  T  I  D </first_frame>
            <second_frame>  F  F  C  R  V  *  S  F  I  F  L  H  N  N  I  P  *  :  N  F  T  H  K  N  N  Q  S  H  N  Q  L  T  Y  S  S  S  F  E  P  Y  V  I  K  L  N  S  I  F  *  N  L  D  R  L  H  S  C  E  Y  P  *  G  N  L  L  E  S  A  Q  *  L  *  T  I  C  L  L  C  T  H  R  T  L  F  R  P  L  A  S  S  S  C  V  S  H  D  L  A  L  F  V  D  S  V  D  R  E  A  H  E  E  A  P  D  L  T  T  Q  P  S  M  L  M  F  L  *  *  A  V  N  G  A  C  D  Q  S  V  L  T  L  P  P  C  V  A  H  S  S  A  F  H  K  L  Q  *   </second_frame>
            <third_frame>   F  F  V  E  Y  N  L  L  F  F  Y  I  I  I  F  H  K :   I  S  H  T  K  T  I  N  R  I  T  S  L  H  I  H  R  V  S  N  H  T  *  L  N  *  I  R  F  F  K  T  L  I  V  Y  T  L  V  N  I  L  E  E  T  S  *  N  P  R  N  N  Y  K  P  Y  V  C  S  V  P  I  G  P  C  S  D  P  *  H  Q  A  H  V  S  P  T  T  *  H  C  S  W  I  Q  *  T  V  R  H  M  R  K  R  L  I  *  R  R  S  H  Q  C  *  C  S  Y  N  R  Q  *  M  V  L  V  T  N  Q  F  *  L  Y  H  L  V  *  P  I  H  L  H  S  I  N  Y  N  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0018L21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="54910" PGL_stop="54619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54910" e_stop="54619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="54910" e_stop="54619" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54910" stop="54619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54909" stop="54735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGTTTACGTGCGGGCTAAGGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCCGAAATTGCTGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</gDNA_template>
            <first_frame> R  N  L  L  D  L  T  T  C  R  H  A  K  D  L  G  I  G  L  G  M  D  D  G  K  T  V  Q  H  K  F  K  V  L  G  C  W  Q  G  S  L  N  V  H  G  L  R  A  G  *  G  R  W  Q  D  S  M  L  T  *  *  S  K  A  V  K  T  W  Q  G  Q  R  Q  R  Q  F  T  R  N  C  *  N  K  T  K  C  G  R  Q  L  K  Y  S  K  C  W  K  </first_frame>
            <second_frame>  A  I  Y  L  I  *  L  R  A  D  M  P  R  T  W  A  L  V  L  A  W  M  M  A  K  Q  C  N  T  S  S  R  C  L  G  V  G  K  A  A  *  T  C  M  V  Y  V  R  A  K  G  V  G  K  T  A  C  *  L  D  E  A  R  L  *  R  L  G  K  V  K  D  K  G  S  S  P  E  I  A  E  I  K  L  S  V  E  D  S  *  N  I  L  S  V  G  S </second_frame>
            <third_frame>   Q  S  T  *  S  N  Y  V  Q  T  C  Q  G  L  G  H  W  S  W  H  G  *  W  Q  N  S  A  T  Q  V  Q  G  A  W  V  L  A  R  Q  L  E  R  A  W  F  T  C  G  L  R  A  L  A  R  Q  H  V  D  L  M  K  Q  G  C  E  D  L  A  R  S  K  T  K  A  V  H  P  K  L  L  K  *  N  *  V  W  K  T  A  K  I  F  *  V  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0018L21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="56242" PGL_stop="57469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56242" e_stop="56558"/>
            <exon e_start="56658" e_stop="56851"/>
            <exon e_start="56931" e_stop="57469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56242" e_stop="56558" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56559" i_stop="56657" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56658" e_stop="56851" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56852" i_stop="56930" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="56931" e_stop="57469" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56242" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="56935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56267" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="57201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56267" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="57148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56329" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="57234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56336" stop="56558"/>
              <exon start="56658" stop="56696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56357" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="57199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56365" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="57191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392903" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56389" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="57074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56401" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="56956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56425" stop="56558"/>
              <exon start="56658" stop="56769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56466" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="57231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56467" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="57276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56467" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="57206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56467" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="57164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56467" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="56936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56540" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="57279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56540" stop="56558"/>
              <exon start="56658" stop="56851"/>
              <exon start="56931" stop="57144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56794" stop="56851"/>
              <exon start="56931" stop="57293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56801" stop="56851"/>
              <exon start="56931" stop="57246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56936" stop="57469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACACATTCACAATAACAAATTCTAATTTATCCCTTTAAATCACTACTCTAATTTTCTATAATGTTGCTGCAGCTTTCTCTTCTTACACTAGTCTTACTATCCCCTGTTTCCGCTGATAATTTCTACCAAGACGCGGCGGTCACGTTTGGTGACCAGCGCGCTCAGATACAAGATGGAGGGCGCCTTCTCACATTGTCACTTGATAAAATTTCAGGTTCCGGATTTCAGTCTAAGAATGAGTATTTATTCGGAAGGTTCGATATGCAGCTTAAACTCGTACCTGGAAATTCTGCTGGCACTGTCACCACATTCTAT : TTGTCTTCTCAAGGAGCAGGGCATGATGAAATTGATTTTGAGTTTCTAGGAAATTCATCAGGACTACCTTACACGGTTCATACCAATGTTTACTCTCAAGGAAAAGGCAATAAAGAACAACAATTTCGTCTCTGGTTTGATCCAACTTCGTCGTTCCACACTTACTCTATTGTTTGGAACTCTCAACGGATCAT : ATTTTTGGTGGATAATATCCCAATTAGAGTGTTCAACAACCACGAAGCACTTGGTGTTGCATACCCAAAGAATCAAGCAATGAGAGTTTACGCGAGTCTATGGAATGCTGATGATTGGGCTACACAAGGAGGACGGGTGAAGACAGATTGGTCTATGGCTCCGTTTACAGCTTCTTACAGGAATTTCAATACAAATGCTTGTGTTTGGTCAGCTGCTACGTCTACTTCGTCTTGTGGAGGTTCTAAGACTGAGTCAGTAAACAATGATGAGACATGGCAAACGCAACAACTGAACGCTAATGGAAGAAATAGAATACGATGGGTTCAGCAGAAGTACATGATCTACAATTACTGTGCAGATGCTAATAGGTTCTCTCAAGGCTTTTCTCCTGAATGCAAGCGTTCAAGGTTCTAAGGCGGATATATATAGTATATGAATGTAAAATTATGTTTGTTTCACTTTTCTATTCTTTTAATTTTGATCAGGTAAAAAAAAGAACATAGTGTAATTATTTGTGTATGCAATATATTCTTTATTC</gDNA_template>
            <first_frame> T  H  I  H  N  N  K  F  *  F  I  P  L  N  H  Y  S  N  F  L  *  C  C  C  S  F  L  F  L  H  *  S  Y  Y  P  L  F  P  L  I  I  S  T  K  T  R  R  S  R  L  V  T  S  A  L  R  Y  K  M  E  G  A  F  S  H  C  H  L  I  K  F  Q  V  P  D  F  S  L  R  M  S  I  Y  S  E  G  S  I  C  S  L  N  S  Y  L  E  I  L  L  A  L  S  P  H  S  I :   C  L  L  K  E  Q  G  M  M  K  L  I  L  S  F  *  E  I  H  Q  D  Y  L  T  R  F  I  P  M  F  T  L  K  E  K  A  I  K  N  N  N  F  V  S  G  L  I  Q  L  R  R  S  T  L  T  L  L  F  G  T  L  N  G  S   : Y  F  W  W  I  I  S  Q  L  E  C  S  T  T  T  K  H  L  V  L  H  T  Q  R  I  K  Q  *  E  F  T  R  V  Y  G  M  L  M  I  G  L  H  K  E  D  G  *  R  Q  I  G  L  W  L  R  L  Q  L  L  T  G  I  S  I  Q  M  L  V  F  G  Q  L  L  R  L  L  R  L  V  E  V  L  R  L  S  Q  *  T  M  M  R  H  G  K  R  N  N  *  T  L  M  E  E  I  E  Y  D  G  F  S  R  S  T  *  S  T  I  T  V  Q  M  L  I  G  S  L  K  A  F  L  L  N  A  S  V  Q  G  S  K  A  D  I  Y  S  I  *  M  *  N  Y  V  C  F  T  F  L  F  F  *  F  *  S  G  K  K  K  N  I  V  *  L  F  V  Y  A  I  Y  S  L  F </first_frame>
            <second_frame>  H  T  F  T  I  T  N  S  N  L  S  L  *  I  T  T  L  I  F  Y  N  V  A  A  A  F  S  S  Y  T  S  L  T  I  P  C  F  R  *  *  F  L  P  R  R  G  G  H  V  W  *  P  A  R  S  D  T  R  W  R  A  P  S  H  I  V  T  *  *  N  F  R  F  R  I  S  V  *  E  *  V  F  I  R  K  V  R  Y  A  A  *  T  R  T  W  K  F  C  W  H  C  H  H  I  L   : F  V  F  S  R  S  R  A  *  *  N  *  F  *  V  S  R  K  F  I  R  T  T  L  H  G  S  Y  Q  C  L  L  S  R  K  R  Q  *  R  T  T  I  S  S  L  V  *  S  N  F  V  V  P  H  L  L  Y  C  L  E  L  S  T  D  H  :  I  F  G  G  *  Y  P  N  *  S  V  Q  Q  P  R  S  T  W  C  C  I  P  K  E  S  S  N  E  S  L  R  E  S  M  E  C  *  *  L  G  Y  T  R  R  T  G  E  D  R  L  V  Y  G  S  V  Y  S  F  L  Q  E  F  Q  Y  K  C  L  C  L  V  S  C  Y  V  Y  F  V  L  W  R  F  *  D  *  V  S  K  Q  *  *  D  M  A  N  A  T  T  E  R  *  W  K  K  *  N  T  M  G  S  A  E  V  H  D  L  Q  L  L  C  R  C  *  *  V  L  S  R  L  F  S  *  M  Q  A  F  K  V  L  R  R  I  Y  I  V  Y  E  C  K  I  M  F  V  S  L  F  Y  S  F  N  F  D  Q  V  K  K  R  T  *  C  N  Y  L  C  M  Q  Y  I  L  Y   </second_frame>
            <third_frame>   T  H  S  Q  *  Q  I  L  I  Y  P  F  K  S  L  L  *  F  S  I  M  L  L  Q  L  S  L  L  T  L  V  L  L  S  P  V  S  A  D  N  F  Y  Q  D  A  A  V  T  F  G  D  Q  R  A  Q  I  Q  D  G  G  R  L  L  T  L  S  L  D  K  I  S  G  S  G  F  Q  S  K  N  E  Y  L  F  G  R  F  D  M  Q  L  K  L  V  P  G  N  S  A  G  T  V  T  T  F  Y  :  L  S  S  Q  G  A  G  H  D  E  I  D  F  E  F  L  G  N  S  S  G  L  P  Y  T  V  H  T  N  V  Y  S  Q  G  K  G  N  K  E  Q  Q  F  R  L  W  F  D  P  T  S  S  F  H  T  Y  S  I  V  W  N  S  Q  R  I  I :   F  L  V  D  N  I  P  I  R  V  F  N  N  H  E  A  L  G  V  A  Y  P  K  N  Q  A  M  R  V  Y  A  S  L  W  N  A  D  D  W  A  T  Q  G  G  R  V  K  T  D  W  S  M  A  P  F  T  A  S  Y  R  N  F  N  T  N  A  C  V  W  S  A  A  T  S  T  S  S  C  G  G  S  K  T  E  S  V  N  N  D  E  T  W  Q  T  Q  Q  L  N  A  N  G  R  N  R  I  R  W  V  Q  Q  K  Y  M  I  Y  N  Y  C  A  D  A  N  R  F  S  Q  G  F  S  P  E  C  K  R  S  R  F  *  G  G  Y  I  *  Y  M  N  V  K  L  C  L  F  H  F  S  I  L  L  I  L  I  R  *  K  K  E  H  S  V  I  I  C  V  C  N  I  F  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56295" stop="56558"/>
                    <exon start="56658" stop="56851"/>
                    <exon start="56931" stop="57345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSIMLLQLSLLTLVLLSPVSADNFYQDAAVTFGDQRAQIQDGGRLLTLSLDKISGSGFQSKNEYLFGRFDMQLKLVPGNSAGTVTTFYLSSQGAGHDEIDFEFLGNSSGLPYTVHTNVYSQGKGNKEQQFRLWFDPTSSFHTYSIVWNSQRIIFLVDNIPIRVFNNHEALGVAYPKNQAMRVYASLWNADDWATQGGRVKTDWSMAPFTASYRNFNTNACVWSAATSTSSCGGSKTESVNNDETWQTQQLNANGRNRIRWVQQKYMIYNYCADANRFSQGFSPECKRSRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="69994" PGL_stop="63680"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69994" e_stop="68318"/>
            <exon e_start="65825" e_stop="65048"/>
            <exon e_start="64703" e_stop="64675"/>
            <exon e_start="64356" e_stop="64334"/>
            <exon e_start="63702" e_stop="63680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="0.998"/>
          <exon-intron don_prob="0.463" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.687" acc_prob="0.724" e_score="0.483"/>
          <exon-intron don_prob="0.653" acc_prob="0.884" e_score="0.478"/>
          <exon-only e_score="0.565"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="69994" e_stop="68318" e_length="1677"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="68317" i_stop="65826" i_length="2492"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="65825" e_stop="65048" e_length="778"/>
          </exon>
          <intron i_serial="2" don_prob="0.463" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65047" i_stop="64704" i_length="344"/>
          </intron>
          <exon e_serial="3" e_score="0.483">
            <gDNA_exon_boundary e_start="64703" e_stop="64675" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.687" acc_prob="0.724">
            <gDNA_intron_boundary i_start="64674" i_stop="64357" i_length="318"/>
          </intron>
          <exon e_serial="4" e_score="0.478">
            <gDNA_exon_boundary e_start="64356" e_stop="64334" e_length="23"/>
          </exon>
          <intron i_serial="4" don_prob="0.653" acc_prob="0.884">
            <gDNA_intron_boundary i_start="64333" i_stop="63703" i_length="631"/>
          </intron>
          <exon e_serial="5" e_score="0.565">
            <gDNA_exon_boundary e_start="63702" e_stop="63680" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69994" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69938" stop="69573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69237" stop="68778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68910" stop="68318"/>
              <exon start="65825" stop="65614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65641" stop="65048"/>
              <exon start="64703" stop="64675"/>
              <exon start="64356" stop="64334"/>
              <exon start="63702" stop="63680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCAATTTTCCCTCAAAAATAGTTCAAAGCTTCACGAAATGAACCCAAAATAACACTTACAGGTTCGAGAAATTCGTCAAATTTGGCCGGAAAAAATGGCTTCCGACGAAGGAACCAATTTAGATTCATCTCGGTTGAAATTTGGGACACCGGAGGCGTTGGAAGAGGTGCGGAATCTCACTGACGTTGGAGACATGACTAGACTTCTCCACGAGTGCATTGCATATCAACGAGCCCTAGATCTAGAACTGGATACTATCCTTTCACATAGATCTGACCTTGACAAGCAGCTTTCCGGCCTTCAAAAATCCGCTCAAGTTCTCGACATTGTTAAAGCTGACGCGGATCACTTATTCTCCAACATCAGTTCAACTTCTCTCCTTGCTGATCAGGTAAGCGCAAAAGTCCGTCAGCTCGATCTAGGTCAGTCGCGTGTTAACGACACTCTCCTTCGAATAGATGCTATCGTTGATCGCTCTAATTGTTTAGACGGTGTACGTAAGGCACTTGCATCTGAGGACTTTGAATCTGCTGCTAATTATGTTCAGACGTTCCTTCAACTTGACGCTAAGTACAAGGATTCAGCTGCTTCTGACCAGAGAGACCAGCTCCTTGCCTCTAAGAAGCAGCTTGAAGGGATTGTCCGGCGTAAATTGGCAGAAGCAGTTGATCAGCGTGATCACTCCACCGTTCTGCGGTTCATAAGGCTGTATCCTCCGTTGGCATTGGAGGAGGAGGGACTGCAAGTGTACGTGATGTATTTGAAGAAGGTAATTGCCATGAGATCGCGCCTTGAGTATGAGCAATTGGTTGAAATGATGAGTGATCAGCAGGGATCCAGCCAGAACCAGCTTAATTTTGTATCCTGTTTGACTAATTTATTCAAAGATATCGTCTTGGCTATTGAAGAGAATGATGAAACTTTAAGGAGCTTGTGTGGAGAGGATGGCATTGTTTATGCAATATGTGAACTTCAAGAAGAGTGTGATTCTCGTGGTTCTACTATTATAAAGAAGTACATGGAGTACAGGAAACTAGCGAAAGTGACTTCTGAGATTAATTCTTACAAGAGCGATTTGCTGTCTGTTGGAATCGAAGGACCAGACCCCAGAGATATCGAAGTATATTTGGAGGAGATCTTGTCTTTGACACAGTTGGGTGAGGATTACACGGGGTATATGATATCGAAGATTAGGGGTTTGAGTTCTGTTGATCCCGAATTAGGTCCCCGTGCCACAAAGGCTTTTAGGAGTGGTAATTTCAGTAAAGTTGTGCAAGACATTACCGGTTATTATGTGATATTGGAAGGATACTTCATGGTTGAGAATGTGAGAAAAGCTATAAAAATTGATGAACTCGTGTTCGATAGTCTCACAACTTCCATGGTGGACGATGTCTTCTATGTTCTGCAGAGCTGTTGTCGAAGGTCCATTTCCACTTCAAATATCAACTCTGTGATTGCAGTTTTAAGCAGTGCTGTAAGTCTATTAGGCGGTGAGTTCAATGAGGCTTTGCAACAGAAAGTCAGAGAGCCTAATCTTGGAGCCAAGCTGTTCTCTGGCGGCGTTGCTGTACAAAAGAATGGTACAGAGATTGCCACGGCTTTGAATAATATGGATGTGAGTGGTGAGTATGCATTGAAATTACGGCATGAGATTGAAGAACAATGTGCTGAG : GTGTTTTCTGCACCAGCAGATAGAGAGAGGGTCAAATCATGTTTATCTGAATTAAATGAGACAAGCAATGGTTTCAAGAAGGCCTTGAACATTGGCTTGGAACAACTAGTGGCTACTGTGACGCCTCGAATTCGGCCAGTGTTGGATACTGTTGCAACAATCAGTTATGAGCTGTCTGAATCTGAATATGCTGACAATGAGGTAAATGACCCATGGGTTCAAAGGCTTCTCCATGCGGTAGAGACCAATGTGGCTTGGCTTCAACCATTAATGACTGCTAACAATTATGACTCGTTTGTACATCTGGTCATTGACTTTGTTGTTAAGAGGCTTGAGGTTATCATGATGCAAAAGAGATTCAGTCAACTTGGTGGTCTTCAACTTGACAGAGATATTCGAGCACTTGTGAGCTACTTCTCCAACATGACCCAGAGGACTGTTAGGGACAAGTTTGCTCGTCTAACCCAAATGGCTACAATATTAAACTTGGAGAAGGTCTCTGAGATTCTGGATTTCTGGGGTGAGAACTCAGGACCCATGACCTGGCGACTTACTCCAGCTGAGGTTAGAAGAGTGTTGAGTTTGAGGGTTGACTTCAAATCTGAGGCAATATCGGCTCTTAAGTTGTAAACCTTTTTATGGTTCAATTTTGTTCAATATCTCTTTATATGCTTGGTGTTGCCACATTTAAAATTTTCAGGTTTATTTACTTCTATAAGAGATTGTATTGGGCACGAAATCTATGAAATATTGTTCAATCGAACACTTCTTTTTCATT : ATGATATAATTTCTCTATTATATAAAAAG : GGATCATCTTGAAAGAAAGAGAA : TGGGAAAAAAACTAGAAAGATGA</gDNA_template>
            <first_frame> L  Q  F  S  L  K  N  S  S  K  L  H  E  M  N  P  K  *  H  L  Q  V  R  E  I  R  Q  I  W  P  E  K  M  A  S  D  E  G  T  N  L  D  S  S  R  L  K  F  G  T  P  E  A  L  E  E  V  R  N  L  T  D  V  G  D  M  T  R  L  L  H  E  C  I  A  Y  Q  R  A  L  D  L  E  L  D  T  I  L  S  H  R  S  D  L  D  K  Q  L  S  G  L  Q  K  S  A  Q  V  L  D  I  V  K  A  D  A  D  H  L  F  S  N  I  S  S  T  S  L  L  A  D  Q  V  S  A  K  V  R  Q  L  D  L  G  Q  S  R  V  N  D  T  L  L  R  I  D  A  I  V  D  R  S  N  C  L  D  G  V  R  K  A  L  A  S  E  D  F  E  S  A  A  N  Y  V  Q  T  F  L  Q  L  D  A  K  Y  K  D  S  A  A  S  D  Q  R  D  Q  L  L  A  S  K  K  Q  L  E  G  I  V  R  R  K  L  A  E  A  V  D  Q  R  D  H  S  T  V  L  R  F  I  R  L  Y  P  P  L  A  L  E  E  E  G  L  Q  V  Y  V  M  Y  L  K  K  V  I  A  M  R  S  R  L  E  Y  E  Q  L  V  E  M  M  S  D  Q  Q  G  S  S  Q  N  Q  L  N  F  V  S  C  L  T  N  L  F  K  D  I  V  L  A  I  E  E  N  D  E  T  L  R  S  L  C  G  E  D  G  I  V  Y  A  I  C  E  L  Q  E  E  C  D  S  R  G  S  T  I  I  K  K  Y  M  E  Y  R  K  L  A  K  V  T  S  E  I  N  S  Y  K  S  D  L  L  S  V  G  I  E  G  P  D  P  R  D  I  E  V  Y  L  E  E  I  L  S  L  T  Q  L  G  E  D  Y  T  G  Y  M  I  S  K  I  R  G  L  S  S  V  D  P  E  L  G  P  R  A  T  K  A  F  R  S  G  N  F  S  K  V  V  Q  D  I  T  G  Y  Y  V  I  L  E  G  Y  F  M  V  E  N  V  R  K  A  I  K  I  D  E  L  V  F  D  S  L  T  T  S  M  V  D  D  V  F  Y  V  L  Q  S  C  C  R  R  S  I  S  T  S  N  I  N  S  V  I  A  V  L  S  S  A  V  S  L  L  G  G  E  F  N  E  A  L  Q  Q  K  V  R  E  P  N  L  G  A  K  L  F  S  G  G  V  A  V  Q  K  N  G  T  E  I  A  T  A  L  N  N  M  D  V  S  G  E  Y  A  L  K  L  R  H  E  I  E  E  Q  C  A  E  :  V  F  S  A  P  A  D  R  E  R  V  K  S  C  L  S  E  L  N  E  T  S  N  G  F  K  K  A  L  N  I  G  L  E  Q  L  V  A  T  V  T  P  R  I  R  P  V  L  D  T  V  A  T  I  S  Y  E  L  S  E  S  E  Y  A  D  N  E  V  N  D  P  W  V  Q  R  L  L  H  A  V  E  T  N  V  A  W  L  Q  P  L  M  T  A  N  N  Y  D  S  F  V  H  L  V  I  D  F  V  V  K  R  L  E  V  I  M  M  Q  K  R  F  S  Q  L  G  G  L  Q  L  D  R  D  I  R  A  L  V  S  Y  F  S  N  M  T  Q  R  T  V  R  D  K  F  A  R  L  T  Q  M  A  T  I  L  N  L  E  K  V  S  E  I  L  D  F  W  G  E  N  S  G  P  M  T  W  R  L  T  P  A  E  V  R  R  V  L  S  L  R  V  D  F  K  S  E  A  I  S  A  L  K  L  *  T  F  L  W  F  N  F  V  Q  Y  L  F  I  C  L  V  L  P  H  L  K  F  S  G  L  F  T  S  I  R  D  C  I  G  H  E  I  Y  E  I  L  F  N  R  T  L  L  F  H   : Y  D  I  I  S  L  L  Y  K  K  :  G  S  S  *  K  K  E  N :   G  K  K  T  R  K  M  </first_frame>
            <second_frame>  C  N  F  P  S  K  I  V  Q  S  F  T  K  *  T  Q  N  N  T  Y  R  F  E  K  F  V  K  F  G  R  K  K  W  L  P  T  K  E  P  I  *  I  H  L  G  *  N  L  G  H  R  R  R  W  K  R  C  G  I  S  L  T  L  E  T  *  L  D  F  S  T  S  A  L  H  I  N  E  P  *  I  *  N  W  I  L  S  F  H  I  D  L  T  L  T  S  S  F  P  A  F  K  N  P  L  K  F  S  T  L  L  K  L  T  R  I  T  Y  S  P  T  S  V  Q  L  L  S  L  L  I  R  *  A  Q  K  S  V  S  S  I  *  V  S  R  V  L  T  T  L  S  F  E  *  M  L  S  L  I  A  L  I  V  *  T  V  Y  V  R  H  L  H  L  R  T  L  N  L  L  L  I  M  F  R  R  S  F  N  L  T  L  S  T  R  I  Q  L  L  L  T  R  E  T  S  S  L  P  L  R  S  S  L  K  G  L  S  G  V  N  W  Q  K  Q  L  I  S  V  I  T  P  P  F  C  G  S  *  G  C  I  L  R  W  H  W  R  R  R  D  C  K  C  T  *  C  I  *  R  R  *  L  P  *  D  R  A  L  S  M  S  N  W  L  K  *  *  V  I  S  R  D  P  A  R  T  S  L  I  L  Y  P  V  *  L  I  Y  S  K  I  S  S  W  L  L  K  R  M  M  K  L  *  G  A  C  V  E  R  M  A  L  F  M  Q  Y  V  N  F  K  K  S  V  I  L  V  V  L  L  L  *  R  S  T  W  S  T  G  N  *  R  K  *  L  L  R  L  I  L  T  R  A  I  C  C  L  L  E  S  K  D  Q  T  P  E  I  S  K  Y  I  W  R  R  S  C  L  *  H  S  W  V  R  I  T  R  G  I  *  Y  R  R  L  G  V  *  V  L  L  I  P  N  *  V  P  V  P  Q  R  L  L  G  V  V  I  S  V  K  L  C  K  T  L  P  V  I  M  *  Y  W  K  D  T  S  W  L  R  M  *  E  K  L  *  K  L  M  N  S  C  S  I  V  S  Q  L  P  W  W  T  M  S  S  M  F  C  R  A  V  V  E  G  P  F  P  L  Q  I  S  T  L  *  L  Q  F  *  A  V  L  *  V  Y  *  A  V  S  S  M  R  L  C  N  R  K  S  E  S  L  I  L  E  P  S  C  S  L  A  A  L  L  Y  K  R  M  V  Q  R  L  P  R  L  *  I  I  W  M  *  V  V  S  M  H  *  N  Y  G  M  R  L  K  N  N  V  L  R :   C  F  L  H  Q  Q  I  E  R  G  S  N  H  V  Y  L  N  *  M  R  Q  A  M  V  S  R  R  P  *  T  L  A  W  N  N  *  W  L  L  *  R  L  E  F  G  Q  C  W  I  L  L  Q  Q  S  V  M  S  C  L  N  L  N  M  L  T  M  R  *  M  T  H  G  F  K  G  F  S  M  R  *  R  P  M  W  L  G  F  N  H  *  *  L  L  T  I  M  T  R  L  Y  I  W  S  L  T  L  L  L  R  G  L  R  L  S  *  C  K  R  D  S  V  N  L  V  V  F  N  L  T  E  I  F  E  H  L  *  A  T  S  P  T  *  P  R  G  L  L  G  T  S  L  L  V  *  P  K  W  L  Q  Y  *  T  W  R  R  S  L  R  F  W  I  S  G  V  R  T  Q  D  P  *  P  G  D  L  L  Q  L  R  L  E  E  C  *  V  *  G  L  T  S  N  L  R  Q  Y  R  L  L  S  C  K  P  F  Y  G  S  I  L  F  N  I  S  L  Y  A  W  C  C  H  I  *  N  F  Q  V  Y  L  L  L  *  E  I  V  L  G  T  K  S  M  K  Y  C  S  I  E  H  F  F  F  I  :  M  I  *  F  L  Y  Y  I  K  R :   D  H  L  E  R  K  R   : M  G  K  K  L  E  R  * </second_frame>
            <third_frame>   A  I  F  P  Q  K  *  F  K  A  S  R  N  E  P  K  I  T  L  T  G  S  R  N  S  S  N  L  A  G  K  N  G  F  R  R  R  N  Q  F  R  F  I  S  V  E  I  W  D  T  G  G  V  G  R  G  A  E  S  H  *  R  W  R  H  D  *  T  S  P  R  V  H  C  I  S  T  S  P  R  S  R  T  G  Y  Y  P  F  T  *  I  *  P  *  Q  A  A  F  R  P  S  K  I  R  S  S  S  R  H  C  *  S  *  R  G  S  L  I  L  Q  H  Q  F  N  F  S  P  C  *  S  G  K  R  K  S  P  S  A  R  S  R  S  V  A  C  *  R  H  S  P  S  N  R  C  Y  R  *  S  L  *  L  F  R  R  C  T  *  G  T  C  I  *  G  L  *  I  C  C  *  L  C  S  D  V  P  S  T  *  R  *  V  Q  G  F  S  C  F  *  P  E  R  P  A  P  C  L  *  E  A  A  *  R  D  C  P  A  *  I  G  R  S  S  *  S  A  *  S  L  H  R  S  A  V  H  K  A  V  S  S  V  G  I  G  G  G  G  T  A  S  V  R  D  V  F  E  E  G  N  C  H  E  I  A  P  *  V  *  A  I  G  *  N  D  E  *  S  A  G  I  Q  P  E  P  A  *  F  C  I  L  F  D  *  F  I  Q  R  Y  R  L  G  Y  *  R  E  *  *  N  F  K  E  L  V  W  R  G  W  H  C  L  C  N  M  *  T  S  R  R  V  *  F  S  W  F  Y  Y  Y  K  E  V  H  G  V  Q  E  T  S  E  S  D  F  *  D  *  F  L  Q  E  R  F  A  V  C  W  N  R  R  T  R  P  Q  R  Y  R  S  I  F  G  G  D  L  V  F  D  T  V  G  *  G  L  H  G  V  Y  D  I  E  D  *  G  F  E  F  C  *  S  R  I  R  S  P  C  H  K  G  F  *  E  W  *  F  Q  *  S  C  A  R  H  Y  R  L  L  C  D  I  G  R  I  L  H  G  *  E  C  E  K  S  Y  K  N  *  *  T  R  V  R  *  S  H  N  F  H  G  G  R  C  L  L  C  S  A  E  L  L  S  K  V  H  F  H  F  K  Y  Q  L  C  D  C  S  F  K  Q  C  C  K  S  I  R  R  *  V  Q  *  G  F  A  T  E  S  Q  R  A  *  S  W  S  Q  A  V  L  W  R  R  C  C  T  K  E  W  Y  R  D  C  H  G  F  E  *  Y  G  C  E  W  *  V  C  I  E  I  T  A  *  D  *  R  T  M  C  *   : G  V  F  C  T  S  R  *  R  E  G  Q  I  M  F  I  *  I  K  *  D  K  Q  W  F  Q  E  G  L  E  H  W  L  G  T  T  S  G  Y  C  D  A  S  N  S  A  S  V  G  Y  C  C  N  N  Q  L  *  A  V  *  I  *  I  C  *  Q  *  G  K  *  P  M  G  S  K  A  S  P  C  G  R  D  Q  C  G  L  A  S  T  I  N  D  C  *  Q  L  *  L  V  C  T  S  G  H  *  L  C  C  *  E  A  *  G  Y  H  D  A  K  E  I  Q  S  T  W  W  S  S  T  *  Q  R  Y  S  S  T  C  E  L  L  L  Q  H  D  P  E  D  C  *  G  Q  V  C  S  S  N  P  N  G  Y  N  I  K  L  G  E  G  L  *  D  S  G  F  L  G  *  E  L  R  T  H  D  L  A  T  Y  S  S  *  G  *  K  S  V  E  F  E  G  *  L  Q  I  *  G  N  I  G  S  *  V  V  N  L  F  M  V  Q  F  C  S  I  S  L  Y  M  L  G  V  A  T  F  K  I  F  R  F  I  Y  F  Y  K  R  L  Y  W  A  R  N  L  *  N  I  V  Q  S  N  T  S  F  S  L :   *  Y  N  F  S  I  I  *  K   : G  I  I  L  K  E  R  E  :  W  E  K  N  *  K  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69940" stop="68318"/>
                    <exon start="65825" stop="65196"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2250</number_coding_nucleotides>
                  <number_encoded_amino_acids>750</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLQVREIRQIWPEKMASDEGTNLDSSRLKFGTPEALEEVRNLTDVGDMTRLLHECIAYQRALDLELDTILSHRSDLDKQLSGLQKSAQVLDIVKADADHLFSNISSTSLLADQVSAKVRQLDLGQSRVNDTLLRIDAIVDRSNCLDGVRKALASEDFESAANYVQTFLQLDAKYKDSAASDQRDQLLASKKQLEGIVRRKLAEAVDQRDHSTVLRFIRLYPPLALEEEGLQVYVMYLKKVIAMRSRLEYEQLVEMMSDQQGSSQNQLNFVSCLTNLFKDIVLAIEENDETLRSLCGEDGIVYAICELQEECDSRGSTIIKKYMEYRKLAKVTSEINSYKSDLLSVGIEGPDPRDIEVYLEEILSLTQLGEDYTGYMISKIRGLSSVDPELGPRATKAFRSGNFSKVVQDITGYYVILEGYFMVENVRKAIKIDELVFDSLTTSMVDDVFYVLQSCCRRSISTSNINSVIAVLSSAVSLLGGEFNEALQQKVREPNLGAKLFSGGVAVQKNGTEIATALNNMDVSGEYALKLRHEIEEQCAEVFSAPADRERVKSCLSELNETSNGFKKALNIGLEQLVATVTPRIRPVLDTVATISYELSESEYADNEVNDPWVQRLLHAVETNVAWLQPLMTANNYDSFVHLVIDFVVKRLEVIMMQKRFSQLGGLQLDRDIRALVSYFSNMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLSLRVDFKSEAISALKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="70200" PGL_stop="70847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70200" e_stop="70220"/>
            <exon e_start="70608" e_stop="70847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.810"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.810">
            <gDNA_exon_boundary e_start="70200" e_stop="70220" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70221" i_stop="70607" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="70608" e_stop="70847" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70200" stop="70220"/>
              <exon start="70608" stop="70847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTTTTCCTTTTCTTTTT : TACTTGTTCCCTTGTTTTCTGAATTTCATTTCAAATTGAATGATATTGAGTTTACAAGATGAGGCATCTAACCTAGATGAGGCATCCTAAGATTTTCAATATTGGGGAACTTCATTTCTCCATGCTACTATGACTACATGTGTTATCATCATTCATCTTGAGCAATTCAAACAAATGATGGACTTGTGGCCCTTTACAAAAGAGGAACTCAAATGTGTTGTATCACTATATACATTGCAA</gDNA_template>
            <first_frame> L  F  F  P  F  L  F  :  Y  L  F  P  C  F  L  N  F  I  S  N  *  M  I  L  S  L  Q  D  E  A  S  N  L  D  E  A  S  *  D  F  Q  Y  W  G  T  S  F  L  H  A  T  M  T  T  C  V  I  I  I  H  L  E  Q  F  K  Q  M  M  D  L  W  P  F  T  K  E  E  L  K  C  V  V  S  L  Y  T  L  Q </first_frame>
            <second_frame>  F  F  F  L  F  F  F :   T  C  S  L  V  F  *  I  S  F  Q  I  E  *  Y  *  V  Y  K  M  R  H  L  T  *  M  R  H  P  K  I  F  N  I  G  E  L  H  F  S  M  L  L  *  L  H  V  L  S  S  F  I  L  S  N  S  N  K  *  W  T  C  G  P  L  Q  K  R  N  S  N  V  L  Y  H  Y  I  H  C   </second_frame>
            <third_frame>   F  F  S  F  S  F   : L  L  V  P  L  F  S  E  F  H  F  K  L  N  D  I  E  F  T  R  *  G  I  *  P  R  *  G  I  L  R  F  S  I  L  G  N  F  I  S  P  C  Y  Y  D  Y  M  C  Y  H  H  S  S  *  A  I  Q  T  N  D  G  L  V  A  L  Y  K  R  G  T  Q  M  C  C  I  T  I  Y  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0018L21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70200" e_stop="70225"/>
            <exon e_start="70619" e_stop="70827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.808"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.808">
            <gDNA_exon_boundary e_start="70200" e_stop="70225" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70226" i_stop="70618" i_length="393"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="70619" e_stop="70827" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70200" stop="70225"/>
              <exon start="70619" stop="70827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217077" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTTTTCCTTTTCTTTTTGTTTT : TTGTTTTCTGAATTTCATTTCAAATTGAATGATATTGAGTTTACAAGATGAGGCATCTAACCTAGATGAGGCATCCTAAGATTTTCAATATTGGGGAACTTCATTTCTCCATGCTACTATGACTACATGTGTTATCATCATTCATCTTGAGCAATTCAAACAAATGATGGACTTGTGGCCCTTTACAAAAGAGGAACTCAAATGTGTTG</gDNA_template>
            <first_frame> L  F  F  P  F  L  F  V  F :   C  F  L  N  F  I  S  N  *  M  I  L  S  L  Q  D  E  A  S  N  L  D  E  A  S  *  D  F  Q  Y  W  G  T  S  F  L  H  A  T  M  T  T  C  V  I  I  I  H  L  E  Q  F  K  Q  M  M  D  L  W  P  F  T  K  E  E  L  K  C  V  </first_frame>
            <second_frame>  F  F  F  L  F  F  L  F   : F  V  F  *  I  S  F  Q  I  E  *  Y  *  V  Y  K  M  R  H  L  T  *  M  R  H  P  K  I  F  N  I  G  E  L  H  F  S  M  L  L  *  L  H  V  L  S  S  F  I  L  S  N  S  N  K  *  W  T  C  G  P  L  Q  K  R  N  S  N  V  L </second_frame>
            <third_frame>   F  F  S  F  S  F  C  F  :  L  F  S  E  F  H  F  K  L  N  D  I  E  F  T  R  *  G  I  *  P  R  *  G  I  L  R  F  S  I  L  G  N  F  I  S  P  C  Y  Y  D  Y  M  C  Y  H  H  S  S  *  A  I  Q  T  N  D  G  L  V  A  L  Y  K  R  G  T  Q  M  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0018L21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="76836" PGL_stop="70586"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76836" e_stop="76758"/>
            <exon e_start="76664" e_stop="76566"/>
            <exon e_start="76489" e_stop="76427"/>
            <exon e_start="75674" e_stop="75519"/>
            <exon e_start="75291" e_stop="75226"/>
            <exon e_start="74423" e_stop="74193"/>
            <exon e_start="73250" e_stop="72975"/>
            <exon e_start="72450" e_stop="72262"/>
            <exon e_start="71210" e_stop="70586"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76836" e_stop="76758" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="76757" i_stop="76665" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76664" e_stop="76566" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="76565" i_stop="76490" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76489" e_stop="76427" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="76426" i_stop="75675" i_length="752"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75674" e_stop="75519" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75518" i_stop="75292" i_length="227"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75291" e_stop="75226" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75225" i_stop="74424" i_length="802"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74423" e_stop="74193" e_length="231"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74192" i_stop="73251" i_length="942"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73250" e_stop="72975" e_length="276"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72974" i_stop="72451" i_length="524"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72450" e_stop="72262" e_length="189"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72261" i_stop="71211" i_length="1051"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="71210" e_stop="70586" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76836" stop="76758"/>
              <exon start="76664" stop="76566"/>
              <exon start="76489" stop="76427"/>
              <exon start="75674" stop="75519"/>
              <exon start="75291" stop="75226"/>
              <exon start="74423" stop="74193"/>
              <exon start="73250" stop="73160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76835" stop="76758"/>
              <exon start="76664" stop="76566"/>
              <exon start="76489" stop="76427"/>
              <exon start="75674" stop="75519"/>
              <exon start="75291" stop="75226"/>
              <exon start="74423" stop="74267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76475" stop="76427"/>
              <exon start="75674" stop="75519"/>
              <exon start="75291" stop="75226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277169" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75664" stop="75519"/>
              <exon start="75291" stop="75226"/>
              <exon start="74423" stop="74227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74239" stop="74193"/>
              <exon start="73250" stop="72975"/>
              <exon start="72450" stop="72262"/>
              <exon start="71210" stop="70890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73250" stop="72975"/>
              <exon start="72450" stop="72262"/>
              <exon start="71210" stop="70963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71152" stop="70612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71131" stop="70586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71131" stop="70586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71013" stop="70586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71013" stop="70586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71012" stop="70586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294447" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71012" stop="70586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAATTCGGCCTCAGACAAATGAGGCTATAGCACATGCCAAGGCTGCCGGAGTTCCAATTGTGATTGCCATAAATAAG : GTTGATAAGGATGGAGCAAATCCCGACCGAGTCATGCAAGAACTTTCCACCATTGGTTTGATGCCGGAAGATTGGGGCGGCGACGTTCCAATGGTTAAG : ATCAGTGCTCTTAAAGGAGAGAATATAGATGATTTGCTGGAAATGGTCATGCTTGTTGCCGAG : TTGCAAGAGTTGAAGGCTAATCCTCAAAGAAATGCCAAGGGGACTGTGATTGAGGCAGGTCTCGATAAATCTAAAGGACCTGTAGCAACGTTCATTGTGCAGAATGGTACACTGAAAGGAGGAGATGTAGTAGTTTGTGGTGGAGCTTATGGAAAG : GTGCGGGCTCTGTTTGATGATAAGGGAAAACGTGTTGATGAAGCAGGACCCTCCATGCCTGTGCAG : GTGATTGGACTGAACAATGTTCCATTTGCTGGTGACGAGTTTGAGGTTGTTGAGTCCCTTGATATTGCTCGTGAAAAGGCTGAAGAACGAGCGGAGTCCTTGCGGAGTGAACGTTTATCGGAAAAGGCCGGAGATGGGAAAATTACACTCTCTTCTTTTGCTTCTGCTGTTTCAGGAGGAACTGGTCTAGACTTGCACCAACTAAATATTATTCTGAAAGTTGATCTTCAG : GGATCCATTGAGGCCGTCAGACAAGCTCTTCAGGTTCTTCCACAGGATAATGTCACTTTGAAGTTCCTACTGCAAGCTACTGGTGATGTGAGCGCCAGTGATGTTGATCTTGCTGTAGCAAGTAAAGCTATTATTTTTGGCTTTAATGTTAGAACTCCGGGTGCTGTGAAGAGCTATGCTGACAATAAAGGTGTTGAAATCCGACTATACAAAGTTATCTATGATCTTATTGATGATGTACGAAAAGCAATGGAGGGACTTCTGGAATCAGTTGAG : GAACAAGTGCCAATTGGTTCAGCAGAAGTACGTGCTGTTTTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTAACAGAGGGAAAAGTAGTGGAAGAATGTGGTGTTCGTGTCACTAGAAAAGGCAAAGCAGTTCATGTTGGTGTGGTCGAATCTTTAAGACGGGTGAAGGAAACTGTGAAAGAG : GTTAATGCGGGACTGGAGTGTGGTATTGGGGTTGAAGATTTCGATGACTTTGAGGTGGGTGATATTCTGGAGGCTTTCAACTCAGTTCAGAAAAGACGAACACTCGAGGAGGCCTCAGCATCAATGGCAGCAGCACTTGAAGAAGTGGGGAGAGGCCTGTGAAGAAACTAGAGGTGAGTTATTGCGTGGCGGTTATAGTTGGGGTTATACATGGCTCCTCTCCTCATGCATAGGTTTAATCAATTGCTAGAGGAGTGCGATGATCAGCACATCACGTTGGGTAAGTTTTGCCGGTTGTTTGTCAAATATACTTGATGCTGTAGAAGATGAGAGCTGCAGAGAATTGGCCATTGTTATGTGCTGTTGCAATGTATATAGTGATACAACACATTTGAGTTCCTCTTTTGTAAAGGGCCACAAGTCCATCATTTGTTTGAATTGCTCAAGATGAATGATGATAACACATGTAGTCATAGTAGCATGGAGAAATGAAGTTCCCCAATATTGAAAATCTTAGGATGCCTCATCTAGGTTAGATGCCTCATCTTGTAAACTCAATATCATTCAATTTGAAATGAAATTCAGAAAACAAGGGAACAAGTAGTTCTACTGTTTCCGTTACATG</gDNA_template>
            <first_frame> R  N  S  A  S  D  K  *  G  Y  S  T  C  Q  G  C  R  S  S  N  C  D  C  H  K  *   : G  *  *  G  W  S  K  S  R  P  S  H  A  R  T  F  H  H  W  F  D  A  G  R  L  G  R  R  R  S  N  G  *   : D  Q  C  S  *  R  R  E  Y  R  *  F  A  G  N  G  H  A  C  C  R   : V  A  R  V  E  G  *  S  S  K  K  C  Q  G  D  C  D  *  G  R  S  R  *  I  *  R  T  C  S  N  V  H  C  A  E  W  Y  T  E  R  R  R  C  S  S  L  W  W  S  L  W  K   : G  A  G  S  V  *  *  *  G  K  T  C  *  *  S  R  T  L  H  A  C  A   : G  D  W  T  E  Q  C  S  I  C  W  *  R  V  *  G  C  *  V  P  *  Y  C  S  *  K  G  *  R  T  S  G  V  L  A  E  *  T  F  I  G  K  G  R  R  W  E  N  Y  T  L  F  F  C  F  C  C  F  R  R  N  W  S  R  L  A  P  T  K  Y  Y  S  E  S  *  S  S   : G  I  H  *  G  R  Q  T  S  S  S  G  S  S  T  G  *  C  H  F  E  V  P  T  A  S  Y  W  *  C  E  R  Q  *  C  *  S  C  C  S  K  *  S  Y  Y  F  W  L  *  C  *  N  S  G  C  C  E  E  L  C  *  Q  *  R  C  *  N  P  T  I  Q  S  Y  L  *  S  Y  *  *  C  T  K  S  N  G  G  T  S  G  I  S  *   : G  T  S  A  N  W  F  S  R  S  T  C  C  F  Q  Q  W  *  W  S  C  C  W  M  H  G  N  R  G  K  S  S  G  R  M  W  C  S  C  H  *  K  R  Q  S  S  S  C  W  C  G  R  I  F  K  T  G  E  G  N  C  E  R   : G  *  C  G  T  G  V  W  Y  W  G  *  R  F  R  *  L  *  G  G  *  Y  S  G  G  F  Q  L  S  S  E  K  T  N  T  R  G  G  L  S  I  N  G  S  S  T  *  R  S  G  E  R  P  V  K  K  L  E  V  S  Y  C  V  A  V  I  V  G  V  I  H  G  S  S  P  H  A  *  V  *  S  I  A  R  G  V  R  *  S  A  H  H  V  G  *  V  L  P  V  V  C  Q  I  Y  L  M  L  *  K  M  R  A  A  E  N  W  P  L  L  C  A  V  A  M  Y  I  V  I  Q  H  I  *  V  P  L  L  *  R  A  T  S  P  S  F  V  *  I  A  Q  D  E  *  *  *  H  M  *  S  *  *  H  G  E  M  K  F  P  N  I  E  N  L  R  M  P  H  L  G  *  M  P  H  L  V  N  S  I  S  F  N  L  K  *  N  S  E  N  K  G  T  S  S  S  T  V  S  V  T   </first_frame>
            <second_frame>  G  I  R  P  Q  T  N  E  A  I  A  H  A  K  A  A  G  V  P  I  V  I  A  I  N  K  :  V  D  K  D  G  A  N  P  D  R  V  M  Q  E  L  S  T  I  G  L  M  P  E  D  W  G  G  D  V  P  M  V  K  :  I  S  A  L  K  G  E  N  I  D  D  L  L  E  M  V  M  L  V  A  E  :  L  Q  E  L  K  A  N  P  Q  R  N  A  K  G  T  V  I  E  A  G  L  D  K  S  K  G  P  V  A  T  F  I  V  Q  N  G  T  L  K  G  G  D  V  V  V  C  G  G  A  Y  G  K  :  V  R  A  L  F  D  D  K  G  K  R  V  D  E  A  G  P  S  M  P  V  Q  :  V  I  G  L  N  N  V  P  F  A  G  D  E  F  E  V  V  E  S  L  D  I  A  R  E  K  A  E  E  R  A  E  S  L  R  S  E  R  L  S  E  K  A  G  D  G  K  I  T  L  S  S  F  A  S  A  V  S  G  G  T  G  L  D  L  H  Q  L  N  I  I  L  K  V  D  L  Q  :  G  S  I  E  A  V  R  Q  A  L  Q  V  L  P  Q  D  N  V  T  L  K  F  L  L  Q  A  T  G  D  V  S  A  S  D  V  D  L  A  V  A  S  K  A  I  I  F  G  F  N  V  R  T  P  G  A  V  K  S  Y  A  D  N  K  G  V  E  I  R  L  Y  K  V  I  Y  D  L  I  D  D  V  R  K  A  M  E  G  L  L  E  S  V  E  :  E  Q  V  P  I  G  S  A  E  V  R  A  V  F  S  S  G  S  G  R  V  A  G  C  M  V  T  E  G  K  V  V  E  E  C  G  V  R  V  T  R  K  G  K  A  V  H  V  G  V  V  E  S  L  R  R  V  K  E  T  V  K  E  :  V  N  A  G  L  E  C  G  I  G  V  E  D  F  D  D  F  E  V  G  D  I  L  E  A  F  N  S  V  Q  K  R  R  T  L  E  E  A  S  A  S  M  A  A  A  L  E  E  V  G  R  G  L  *  R  N  *  R  *  V  I  A  W  R  L  *  L  G  L  Y  M  A  P  L  L  M  H  R  F  N  Q  L  L  E  E  C  D  D  Q  H  I  T  L  G  K  F  C  R  L  F  V  K  Y  T  *  C  C  R  R  *  E  L  Q  R  I  G  H  C  Y  V  L  L  Q  C  I  *  *  Y  N  T  F  E  F  L  F  C  K  G  P  Q  V  H  H  L  F  E  L  L  K  M  N  D  D  N  T  C  S  H  S  S  M  E  K  *  S  S  P  I  L  K  I  L  G  C  L  I  *  V  R  C  L  I  L  *  T  Q  Y  H  S  I  *  N  E  I  Q  K  T  R  E  Q  V  V  L  L  F  P  L  H  </second_frame>
            <third_frame>   E  F  G  L  R  Q  M  R  L  *  H  M  P  R  L  P  E  F  Q  L  *  L  P  *  I  R :   L  I  R  M  E  Q  I  P  T  E  S  C  K  N  F  P  P  L  V  *  C  R  K  I  G  A  A  T  F  Q  W  L  R :   S  V  L  L  K  E  R  I  *  M  I  C  W  K  W  S  C  L  L  P  S :   C  K  S  *  R  L  I  L  K  E  M  P  R  G  L  *  L  R  Q  V  S  I  N  L  K  D  L  *  Q  R  S  L  C  R  M  V  H  *  K  E  E  M  *  *  F  V  V  E  L  M  E  R :   C  G  L  C  L  M  I  R  E  N  V  L  M  K  Q  D  P  P  C  L  C  R :   *  L  D  *  T  M  F  H  L  L  V  T  S  L  R  L  L  S  P  L  I  L  L  V  K  R  L  K  N  E  R  S  P  C  G  V  N  V  Y  R  K  R  P  E  M  G  K  L  H  S  L  L  L  L  L  L  F  Q  E  E  L  V  *  T  C  T  N  *  I  L  F  *  K  L  I  F  R :   D  P  L  R  P  S  D  K  L  F  R  F  F  H  R  I  M  S  L  *  S  S  Y  C  K  L  L  V  M  *  A  P  V  M  L  I  L  L  *  Q  V  K  L  L  F  L  A  L  M  L  E  L  R  V  L  *  R  A  M  L  T  I  K  V  L  K  S  D  Y  T  K  L  S  M  I  L  L  M  M  Y  E  K  Q  W  R  D  F  W  N  Q  L  R :   N  K  C  Q  L  V  Q  Q  K  Y  V  L  F  S  A  V  V  V  V  V  L  L  D  A  W  *  Q  R  E  K  *  W  K  N  V  V  F  V  S  L  E  K  A  K  Q  F  M  L  V  W  S  N  L  *  D  G  *  R  K  L  *  K  R :   L  M  R  D  W  S  V  V  L  G  L  K  I  S  M  T  L  R  W  V  I  F  W  R  L  S  T  Q  F  R  K  D  E  H  S  R  R  P  Q  H  Q  W  Q  Q  H  L  K  K  W  G  E  A  C  E  E  T  R  G  E  L  L  R  G  G  Y  S  W  G  Y  T  W  L  L  S  S  C  I  G  L  I  N  C  *  R  S  A  M  I  S  T  S  R  W  V  S  F  A  G  C  L  S  N  I  L  D  A  V  E  D  E  S  C  R  E  L  A  I  V  M  C  C  C  N  V  Y  S  D  T  T  H  L  S  S  S  F  V  K  G  H  K  S  I  I  C  L  N  C  S  R  *  M  M  I  T  H  V  V  I  V  A  W  R  N  E  V  P  Q  Y  *  K  S  *  D  A  S  S  R  L  D  A  S  S  C  K  L  N  I  I  Q  F  E  M  K  F  R  K  Q  G  N  K  *  F  Y  C  F  R  Y  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76835" stop="76758"/>
                    <exon start="76664" stop="76566"/>
                    <exon start="76489" stop="76427"/>
                    <exon start="75674" stop="75519"/>
                    <exon start="75291" stop="75226"/>
                    <exon start="74423" stop="74193"/>
                    <exon start="73250" stop="72975"/>
                    <exon start="72450" stop="72262"/>
                    <exon start="71210" stop="71049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1317</number_coding_nucleotides>
                  <number_encoded_amino_acids>439</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIRPQTNEAIAHAKAAGVPIVIAINKVDKDGANPDRVMQELSTIGLMPEDWGGDVPMVKISALKGENIDDLLEMVMLVAELQELKANPQRNAKGTVIEAGLDKSKGPVATFIVQNGTLKGGDVVVCGGAYGKVRALFDDKGKRVDEAGPSMPVQVIGLNNVPFAGDEFEVVESLDIAREKAEERAESLRSERLSEKAGDGKITLSSFASAVSGGTGLDLHQLNIILKVDLQGSIEAVRQALQVLPQDNVTLKFLLQATGDVSASDVDLAVASKAIIFGFNVRTPGAVKSYADNKGVEIRLYKVIYDLIDDVRKAMEGLLESVEEQVPIGSAEVRAVFSSGSGRVAGCMVTEGKVVEECGVRVTRKGKAVHVGVVESLRRVKETVKEVNAGLECGIGVEDFDDFEVGDILEAFNSVQKRRTLEEASASMAAALEEVGRGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70960" stop="70760"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSAMISTSRWVSFAGCLSNILDAVEDESCRELAIVMCCCNVYSDTTHLSSSFVKGHKSIICLNCSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="79432" PGL_stop="77750"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79351" e_stop="77750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79351" e_stop="77750" e_length="1602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79351" stop="78983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79296" stop="78548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78715" stop="77960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78651" stop="77855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78500" stop="77750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAAACTAACACCAGCTAACTGTGTGTTGGTAACTTAACCCTTGGCTCTCTATTGCTCTTCCACTCCTCATTAGCCAATTTCTTATGCAAGAACAAGGTCATTACTTCATAAAGGTAACACCTTTTCAGCTCCCATGTGATAAATAGAAGAAATTCCATCTGGGGTTCCTTTCTTGATTTCAAAAAGATTAGATTTTTATTAGTTTTTTGCTTTAGTTTTCATGATTCTGGTTATTGAATTGAATTTCATTGTATACCCAGGTTCTTGATTTTTGATATTTGGAGGTGAATTTTGGGAAGTGAGGATTTTAAGTGCTACATTGTTGTTAGGTAGTTTTTGTGGGGATTTGGTTGGATAAGTAAATGGTTGAGGTGTAAGTTAAGTGTACAGAGAGATGAGTAGTATGGCTTCCCTGGTGAGTTTGGGGAGTGTGTGTGGATGTTCTTCTGGACAGTTTGAAGGGTCATTCTCACTAGTTAGGAGGGTTTCTTTTTCGAAGAATTTTGGAAGCGTAAATAGAATTTGGGGTGGGAAAAGATGGCGTTATGTTTCTGTTTGTAGATATTCAGTCACCACGGATTTCGTTGCTGATCAGGGGACATCAATATCTCTTGAATCCTCATCCAGTAGTAATAAGGATGATGATGCTGATCTTATGCTTAAGCCGGCTCCTAAGCCACAATTGAAACCTGGACCCAGACCTGGCCCTGTTTTAGGGAATGGACCAGTCCTTAGCTCTAATTCTGATGGTGAAAAAAGAAATCCTATTGAAGAAGAGAGAAGCAAGGTGATTGAGTCACTTGGAGAGGCATTAGAGACAGCGGAGAAGCTAGAAACTAACAGAAAAACAAATGTTTCGGTTAACAAGGCGTCTGCCAGTGCACGTACTACACAAAGAAATAGCAAGACAGTTGATTCTGATGATTCTTCCAACAGGAAGTCGAAAACTTTGAAGAGTGTCTGGAAAAAAGGGAATCCGATTGCTGCTGTACAAAAAGTTGTAAAACCACCCCCTAAACAGGAACCAATGACTGATGGTGGAAGGAATAGTGAATCCCAAAGTGTTGCTCCAATAAAACCCCCTCAGCCACCCCAGAAAGTTCAACCACAGTTACTAGCAAGACCATCTGTAGCTCCTCCTCCTCCTATTATCAAGAAACCGGTGATATTGAAGGATGTTGGTGCTGCGGCGAAGTCCCCACCCTCTGATGGAGTTGAATCTGTTGGAAAGACCAAAGAACTTGAAGCAGCTGGAAAGACCAAAGAACGCAAGACAATATTGGTTGATAAATTTGCCTCCAAGAAATCAGCTGTTGATCCTGTGATTGCTCAAGCTGTTTTAGCCCCTCCTAAATTTGGAAAGAGCGCACCTCCTGGTAAATTCAGGGAGGAGTTCCGTAAAAAGAGTGGTGTATCTGGAGGACAACGCAGGCGTATGGTTGATGATGGGATTCCCGACGAGGAAGCATCAGAGCTTGATGTTTCTCTTCCTGGTAGAGCAAGGAAGGGAAGGAAGTGGACTAAGGCAAGTCGCAAGGCAGCTCGACTTAAGGCTGCTCAAGAGTCTGCACCTGTCAAAGTAGAAATTCTAGAGGTTGGT</gDNA_template>
            <first_frame> H  K  L  T  P  A  N  C  V  L  V  T  *  P  L  A  L  Y  C  S  S  T  P  H  *  P  I  S  Y  A  R  T  R  S  L  L  H  K  G  N  T  F  S  A  P  M  *  *  I  E  E  I  P  S  G  V  P  F  L  I  S  K  R  L  D  F  Y  *  F  F  A  L  V  F  M  I  L  V  I  E  L  N  F  I  V  Y  P  G  S  *  F  L  I  F  G  G  E  F  W  E  V  R  I  L  S  A  T  L  L  L  G  S  F  C  G  D  L  V  G  *  V  N  G  *  G  V  S  *  V  Y  R  E  M  S  S  M  A  S  L  V  S  L  G  S  V  C  G  C  S  S  G  Q  F  E  G  S  F  S  L  V  R  R  V  S  F  S  K  N  F  G  S  V  N  R  I  W  G  G  K  R  W  R  Y  V  S  V  C  R  Y  S  V  T  T  D  F  V  A  D  Q  G  T  S  I  S  L  E  S  S  S  S  S  N  K  D  D  D  A  D  L  M  L  K  P  A  P  K  P  Q  L  K  P  G  P  R  P  G  P  V  L  G  N  G  P  V  L  S  S  N  S  D  G  E  K  R  N  P  I  E  E  E  R  S  K  V  I  E  S  L  G  E  A  L  E  T  A  E  K  L  E  T  N  R  K  T  N  V  S  V  N  K  A  S  A  S  A  R  T  T  Q  R  N  S  K  T  V  D  S  D  D  S  S  N  R  K  S  K  T  L  K  S  V  W  K  K  G  N  P  I  A  A  V  Q  K  V  V  K  P  P  P  K  Q  E  P  M  T  D  G  G  R  N  S  E  S  Q  S  V  A  P  I  K  P  P  Q  P  P  Q  K  V  Q  P  Q  L  L  A  R  P  S  V  A  P  P  P  P  I  I  K  K  P  V  I  L  K  D  V  G  A  A  A  K  S  P  P  S  D  G  V  E  S  V  G  K  T  K  E  L  E  A  A  G  K  T  K  E  R  K  T  I  L  V  D  K  F  A  S  K  K  S  A  V  D  P  V  I  A  Q  A  V  L  A  P  P  K  F  G  K  S  A  P  P  G  K  F  R  E  E  F  R  K  K  S  G  V  S  G  G  Q  R  R  R  M  V  D  D  G  I  P  D  E  E  A  S  E  L  D  V  S  L  P  G  R  A  R  K  G  R  K  W  T  K  A  S  R  K  A  A  R  L  K  A  A  Q  E  S  A  P  V  K  V  E  I  L  E  V  G </first_frame>
            <second_frame>  T  N  *  H  Q  L  T  V  C  W  *  L  N  P  W  L  S  I  A  L  P  L  L  I  S  Q  F  L  M  Q  E  Q  G  H  Y  F  I  K  V  T  P  F  Q  L  P  C  D  K  *  K  K  F  H  L  G  F  L  S  *  F  Q  K  D  *  I  F  I  S  F  L  L  *  F  S  *  F  W  L  L  N  *  I  S  L  Y  T  Q  V  L  D  F  *  Y  L  E  V  N  F  G  K  *  G  F  *  V  L  H  C  C  *  V  V  F  V  G  I  W  L  D  K  *  M  V  E  V  *  V  K  C  T  E  R  *  V  V  W  L  P  W  *  V  W  G  V  C  V  D  V  L  L  D  S  L  K  G  H  S  H  *  L  G  G  F  L  F  R  R  I  L  E  A  *  I  E  F  G  V  G  K  D  G  V  M  F  L  F  V  D  I  Q  S  P  R  I  S  L  L  I  R  G  H  Q  Y  L  L  N  P  H  P  V  V  I  R  M  M  M  L  I  L  C  L  S  R  L  L  S  H  N  *  N  L  D  P  D  L  A  L  F  *  G  M  D  Q  S  L  A  L  I  L  M  V  K  K  E  I  L  L  K  K  R  E  A  R  *  L  S  H  L  E  R  H  *  R  Q  R  R  S  *  K  L  T  E  K  Q  M  F  R  L  T  R  R  L  P  V  H  V  L  H  K  E  I  A  R  Q  L  I  L  M  I  L  P  T  G  S  R  K  L  *  R  V  S  G  K  K  G  I  R  L  L  L  Y  K  K  L  *  N  H  P  L  N  R  N  Q  *  L  M  V  E  G  I  V  N  P  K  V  L  L  Q  *  N  P  L  S  H  P  R  K  F  N  H  S  Y  *  Q  D  H  L  *  L  L  L  L  L  L  S  R  N  R  *  Y  *  R  M  L  V  L  R  R  S  P  H  P  L  M  E  L  N  L  L  E  R  P  K  N  L  K  Q  L  E  R  P  K  N  A  R  Q  Y  W  L  I  N  L  P  P  R  N  Q  L  L  I  L  *  L  L  K  L  F  *  P  L  L  N  L  E  R  A  H  L  L  V  N  S  G  R  S  S  V  K  R  V  V  Y  L  E  D  N  A  G  V  W  L  M  M  G  F  P  T  R  K  H  Q  S  L  M  F  L  F  L  V  E  Q  G  R  E  G  S  G  L  R  Q  V  A  R  Q  L  D  L  R  L  L  K  S  L  H  L  S  K  *  K  F  *  R  L   </second_frame>
            <third_frame>   Q  T  N  T  S  *  L  C  V  G  N  L  T  L  G  S  L  L  L  F  H  S  S  L  A  N  F  L  C  K  N  K  V  I  T  S  *  R  *  H  L  F  S  S  H  V  I  N  R  R  N  S  I  W  G  S  F  L  D  F  K  K  I  R  F  L  L  V  F  C  F  S  F  H  D  S  G  Y  *  I  E  F  H  C  I  P  R  F  L  I  F  D  I  W  R  *  I  L  G  S  E  D  F  K  C  Y  I  V  V  R  *  F  L  W  G  F  G  W  I  S  K  W  L  R  C  K  L  S  V  Q  R  D  E  *  Y  G  F  P  G  E  F  G  E  C  V  W  M  F  F  W  T  V  *  R  V  I  L  T  S  *  E  G  F  F  F  E  E  F  W  K  R  K  *  N  L  G  W  E  K  M  A  L  C  F  C  L  *  I  F  S  H  H  G  F  R  C  *  S  G  D  I  N  I  S  *  I  L  I  Q  *  *  *  G  *  *  C  *  S  Y  A  *  A  G  S  *  A  T  I  E  T  W  T  Q  T  W  P  C  F  R  E  W  T  S  P  *  L  *  F  *  W  *  K  K  K  S  Y  *  R  R  E  K  Q  G  D  *  V  T  W  R  G  I  R  D  S  G  E  A  R  N  *  Q  K  N  K  C  F  G  *  Q  G  V  C  Q  C  T  Y  Y  T  K  K  *  Q  D  S  *  F  *  *  F  F  Q  Q  E  V  E  N  F  E  E  C  L  E  K  R  E  S  D  C  C  C  T  K  S  C  K  T  T  P  *  T  G  T  N  D  *  W  W  K  E  *  *  I  P  K  C  C  S  N  K  T  P  S  A  T  P  E  S  S  T  T  V  T  S  K  T  I  C  S  S  S  S  S  Y  Y  Q  E  T  G  D  I  E  G  C  W  C  C  G  E  V  P  T  L  *  W  S  *  I  C  W  K  D  Q  R  T  *  S  S  W  K  D  Q  R  T  Q  D  N  I  G  *  *  I  C  L  Q  E  I  S  C  *  S  C  D  C  S  S  C  F  S  P  S  *  I  W  K  E  R  T  S  W  *  I  Q  G  G  V  P  *  K  E  W  C  I  W  R  T  T  Q  A  Y  G  *  *  W  D  S  R  R  G  S  I  R  A  *  C  F  S  S  W  *  S  K  E  G  K  E  V  D  *  G  K  S  Q  G  S  S  T  *  G  C  S  R  V  C  T  C  Q  S  R  N  S  R  G  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78967" stop="77750"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1218</number_coding_nucleotides>
                  <number_encoded_amino_acids>406</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYREMSSMASLVSLGSVCGCSSGQFEGSFSLVRRVSFSKNFGSVNRIWGGKRWRYVSVCRYSVTTDFVADQGTSISLESSSSSNKDDDADLMLKPAPKPQLKPGPRPGPVLGNGPVLSSNSDGEKRNPIEEERSKVIESLGEALETAEKLETNRKTNVSVNKASASARTTQRNSKTVDSDDSSNRKSKTLKSVWKKGNPIAAVQKVVKPPPKQEPMTDGGRNSESQSVAPIKPPQPPQKVQPQLLARPSVAPPPPIIKKPVILKDVGAAAKSPPSDGVESVGKTKELEAAGKTKERKTILVDKFASKKSAVDPVIAQAVLAPPKFGKSAPPGKFREEFRKKSGVSGGQRRRMVDDGIPDEEASELDVSLPGRARKGRKWTKASRKAARLKAAQESAPVKVEILEVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79432" e_stop="79237"/>
            <exon e_start="79089" e_stop="77750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.938" acc_prob="0.717" e_score="0.980"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="79432" e_stop="79237" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.938" acc_prob="0.717">
            <gDNA_intron_boundary i_start="79236" i_stop="79090" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79089" e_stop="77750" e_length="1340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79432" stop="79237"/>
              <exon start="79089" stop="78526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79318" stop="79237"/>
              <exon start="79089" stop="78812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78715" stop="77960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78651" stop="77855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78500" stop="77750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTTGTATATCCGTTCACTTTGATTTCAATTCCTTCTCAGCCACTCGCTTCTTTCATCTTTGTCTATCTCTCTGTACACACAAACTAACACCAGCTAACTGTGTGTTGGTAACTTAACCCTTGGCTCTCTATTGCTCTTCCACTCCTCATTAGCCAATTTCTTATGCAAGAACAAGGTCATTACTTCATAAAG : GTTCTTGATTTTTGATATTTGGAGGTGAATTTTGGGAAGTGAGGATTTTAAGTGCTACATTGTTGTTAGGTAGTTTTTGTGGGGATTTGGTTGGATAAGTAAATGGTTGAGGTGTAAGTTAAGTGTACAGAGAGATGAGTAGTATGGCTTCCCTGGTGAGTTTGGGGAGTGTGTGTGGATGTTCTTCTGGACAGTTTGAAGGGTCATTCTCACTAGTTAGGAGGGTTTCTTTTTCGAAGAATTTTGGAAGCGTAAATAGAATTTGGGGTGGGAAAAGATGGCGTTATGTTTCTGTTTGTAGATATTCAGTCACCACGGATTTCGTTGCTGATCAGGGGACATCAATATCTCTTGAATCCTCATCCAGTAGTAATAAGGATGATGATGCTGATCTTATGCTTAAGCCGGCTCCTAAGCCACAATTGAAACCTGGACCCAGACCTGGCCCTGTTTTAGGGAATGGACCAGTCCTTAGCTCTAATTCTGATGGTGAAAAAAGAAATCCTATTGAAGAAGAGAGAAGCAAGGTGATTGAGTCACTTGGAGAGGCATTAGAGACAGCGGAGAAGCTAGAAACTAACAGAAAAACAAATGTTTCGGTTAACAAGGCGTCTGCCAGTGCACGTACTACACAAAGAAATAGCAAGACAGTTGATTCTGATGATTCTTCCAACAGGAAGTCGAAAACTTTGAAGAGTGTCTGGAAAAAAGGGAATCCGATTGCTGCTGTACAAAAAGTTGTAAAACCACCCCCTAAACAGGAACCAATGACTGATGGTGGAAGGAATAGTGAATCCCAAAGTGTTGCTCCAATAAAACCCCCTCAGCCACCCCAGAAAGTTCAACCACAGTTACTAGCAAGACCATCTGTAGCTCCTCCTCCTCCTATTATCAAGAAACCGGTGATATTGAAGGATGTTGGTGCTGCGGCGAAGTCCCCACCCTCTGATGGAGTTGAATCTGTTGGAAAGACCAAAGAACTTGAAGCAGCTGGAAAGACCAAAGAACGCAAGACAATATTGGTTGATAAATTTGCCTCCAAGAAATCAGCTGTTGATCCTGTGATTGCTCAAGCTGTTTTAGCCCCTCCTAAATTTGGAAAGAGCGCACCTCCTGGTAAATTCAGGGAGGAGTTCCGTAAAAAGAGTGGTGTATCTGGAGGACAACGCAGGCGTATGGTTGATGATGGGATTCCCGACGAGGAAGCATCAGAGCTTGATGTTTCTCTTCCTGGTAGAGCAAGGAAGGGAAGGAAGTGGACTAAGGCAAGTCGCAAGGCAGCTCGACTTAAGGCTGCTCAAGAGTCTGCACCTGTCAAAGTAGAAATTCTAGAGGTTGGT</gDNA_template>
            <first_frame> Q  I  C  I  S  V  H  F  D  F  N  S  F  S  A  T  R  F  F  H  L  C  L  S  L  C  T  H  K  L  T  P  A  N  C  V  L  V  T  *  P  L  A  L  Y  C  S  S  T  P  H  *  P  I  S  Y  A  R  T  R  S  L  L  H  K   : G  S  *  F  L  I  F  G  G  E  F  W  E  V  R  I  L  S  A  T  L  L  L  G  S  F  C  G  D  L  V  G  *  V  N  G  *  G  V  S  *  V  Y  R  E  M  S  S  M  A  S  L  V  S  L  G  S  V  C  G  C  S  S  G  Q  F  E  G  S  F  S  L  V  R  R  V  S  F  S  K  N  F  G  S  V  N  R  I  W  G  G  K  R  W  R  Y  V  S  V  C  R  Y  S  V  T  T  D  F  V  A  D  Q  G  T  S  I  S  L  E  S  S  S  S  S  N  K  D  D  D  A  D  L  M  L  K  P  A  P  K  P  Q  L  K  P  G  P  R  P  G  P  V  L  G  N  G  P  V  L  S  S  N  S  D  G  E  K  R  N  P  I  E  E  E  R  S  K  V  I  E  S  L  G  E  A  L  E  T  A  E  K  L  E  T  N  R  K  T  N  V  S  V  N  K  A  S  A  S  A  R  T  T  Q  R  N  S  K  T  V  D  S  D  D  S  S  N  R  K  S  K  T  L  K  S  V  W  K  K  G  N  P  I  A  A  V  Q  K  V  V  K  P  P  P  K  Q  E  P  M  T  D  G  G  R  N  S  E  S  Q  S  V  A  P  I  K  P  P  Q  P  P  Q  K  V  Q  P  Q  L  L  A  R  P  S  V  A  P  P  P  P  I  I  K  K  P  V  I  L  K  D  V  G  A  A  A  K  S  P  P  S  D  G  V  E  S  V  G  K  T  K  E  L  E  A  A  G  K  T  K  E  R  K  T  I  L  V  D  K  F  A  S  K  K  S  A  V  D  P  V  I  A  Q  A  V  L  A  P  P  K  F  G  K  S  A  P  P  G  K  F  R  E  E  F  R  K  K  S  G  V  S  G  G  Q  R  R  R  M  V  D  D  G  I  P  D  E  E  A  S  E  L  D  V  S  L  P  G  R  A  R  K  G  R  K  W  T  K  A  S  R  K  A  A  R  L  K  A  A  Q  E  S  A  P  V  K  V  E  I  L  E  V  G </first_frame>
            <second_frame>  K  F  V  Y  P  F  T  L  I  S  I  P  S  Q  P  L  A  S  F  I  F  V  Y  L  S  V  H  T  N  *  H  Q  L  T  V  C  W  *  L  N  P  W  L  S  I  A  L  P  L  L  I  S  Q  F  L  M  Q  E  Q  G  H  Y  F  I  K  :  V  L  D  F  *  Y  L  E  V  N  F  G  K  *  G  F  *  V  L  H  C  C  *  V  V  F  V  G  I  W  L  D  K  *  M  V  E  V  *  V  K  C  T  E  R  *  V  V  W  L  P  W  *  V  W  G  V  C  V  D  V  L  L  D  S  L  K  G  H  S  H  *  L  G  G  F  L  F  R  R  I  L  E  A  *  I  E  F  G  V  G  K  D  G  V  M  F  L  F  V  D  I  Q  S  P  R  I  S  L  L  I  R  G  H  Q  Y  L  L  N  P  H  P  V  V  I  R  M  M  M  L  I  L  C  L  S  R  L  L  S  H  N  *  N  L  D  P  D  L  A  L  F  *  G  M  D  Q  S  L  A  L  I  L  M  V  K  K  E  I  L  L  K  K  R  E  A  R  *  L  S  H  L  E  R  H  *  R  Q  R  R  S  *  K  L  T  E  K  Q  M  F  R  L  T  R  R  L  P  V  H  V  L  H  K  E  I  A  R  Q  L  I  L  M  I  L  P  T  G  S  R  K  L  *  R  V  S  G  K  K  G  I  R  L  L  L  Y  K  K  L  *  N  H  P  L  N  R  N  Q  *  L  M  V  E  G  I  V  N  P  K  V  L  L  Q  *  N  P  L  S  H  P  R  K  F  N  H  S  Y  *  Q  D  H  L  *  L  L  L  L  L  L  S  R  N  R  *  Y  *  R  M  L  V  L  R  R  S  P  H  P  L  M  E  L  N  L  L  E  R  P  K  N  L  K  Q  L  E  R  P  K  N  A  R  Q  Y  W  L  I  N  L  P  P  R  N  Q  L  L  I  L  *  L  L  K  L  F  *  P  L  L  N  L  E  R  A  H  L  L  V  N  S  G  R  S  S  V  K  R  V  V  Y  L  E  D  N  A  G  V  W  L  M  M  G  F  P  T  R  K  H  Q  S  L  M  F  L  F  L  V  E  Q  G  R  E  G  S  G  L  R  Q  V  A  R  Q  L  D  L  R  L  L  K  S  L  H  L  S  K  *  K  F  *  R  L   </second_frame>
            <third_frame>   N  L  Y  I  R  S  L  *  F  Q  F  L  L  S  H  S  L  L  S  S  L  S  I  S  L  Y  T  Q  T  N  T  S  *  L  C  V  G  N  L  T  L  G  S  L  L  L  F  H  S  S  L  A  N  F  L  C  K  N  K  V  I  T  S  *  R :   F  L  I  F  D  I  W  R  *  I  L  G  S  E  D  F  K  C  Y  I  V  V  R  *  F  L  W  G  F  G  W  I  S  K  W  L  R  C  K  L  S  V  Q  R  D  E  *  Y  G  F  P  G  E  F  G  E  C  V  W  M  F  F  W  T  V  *  R  V  I  L  T  S  *  E  G  F  F  F  E  E  F  W  K  R  K  *  N  L  G  W  E  K  M  A  L  C  F  C  L  *  I  F  S  H  H  G  F  R  C  *  S  G  D  I  N  I  S  *  I  L  I  Q  *  *  *  G  *  *  C  *  S  Y  A  *  A  G  S  *  A  T  I  E  T  W  T  Q  T  W  P  C  F  R  E  W  T  S  P  *  L  *  F  *  W  *  K  K  K  S  Y  *  R  R  E  K  Q  G  D  *  V  T  W  R  G  I  R  D  S  G  E  A  R  N  *  Q  K  N  K  C  F  G  *  Q  G  V  C  Q  C  T  Y  Y  T  K  K  *  Q  D  S  *  F  *  *  F  F  Q  Q  E  V  E  N  F  E  E  C  L  E  K  R  E  S  D  C  C  C  T  K  S  C  K  T  T  P  *  T  G  T  N  D  *  W  W  K  E  *  *  I  P  K  C  C  S  N  K  T  P  S  A  T  P  E  S  S  T  T  V  T  S  K  T  I  C  S  S  S  S  S  Y  Y  Q  E  T  G  D  I  E  G  C  W  C  C  G  E  V  P  T  L  *  W  S  *  I  C  W  K  D  Q  R  T  *  S  S  W  K  D  Q  R  T  Q  D  N  I  G  *  *  I  C  L  Q  E  I  S  C  *  S  C  D  C  S  S  C  F  S  P  S  *  I  W  K  E  R  T  S  W  *  I  Q  G  G  V  P  *  K  E  W  C  I  W  R  T  T  Q  A  Y  G  *  *  W  D  S  R  R  G  S  I  R  A  *  C  F  S  S  W  *  S  K  E  G  K  E  V  D  *  G  K  S  Q  G  S  S  T  *  G  C  S  R  V  C  T  C  Q  S  R  N  S  R  G  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78967" stop="77750"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1218</number_coding_nucleotides>
                  <number_encoded_amino_acids>406</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYREMSSMASLVSLGSVCGCSSGQFEGSFSLVRRVSFSKNFGSVNRIWGGKRWRYVSVCRYSVTTDFVADQGTSISLESSSSSNKDDDADLMLKPAPKPQLKPGPRPGPVLGNGPVLSSNSDGEKRNPIEEERSKVIESLGEALETAEKLETNRKTNVSVNKASASARTTQRNSKTVDSDDSSNRKSKTLKSVWKKGNPIAAVQKVVKPPPKQEPMTDGGRNSESQSVAPIKPPQPPQKVQPQLLARPSVAPPPPIIKKPVILKDVGAAAKSPPSDGVESVGKTKELEAAGKTKERKTILVDKFASKKSAVDPVIAQAVLAPPKFGKSAPPGKFREEFRKKSGVSGGQRRRMVDDGIPDEEASELDVSLPGRARKGRKWTKASRKAARLKAAQESAPVKVEILEVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="84077" PGL_stop="87939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84077" e_stop="84255"/>
            <exon e_start="85256" e_stop="85505"/>
            <exon e_start="85864" e_stop="85987"/>
            <exon e_start="87742" e_stop="87939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84077" e_stop="84255" e_length="179"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84256" i_stop="85255" i_length="1000"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85256" e_stop="85505" e_length="250"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.974">
            <gDNA_intron_boundary i_start="85506" i_stop="85863" i_length="358"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85864" e_stop="85987" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="85988" i_stop="87741" i_length="1754"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87742" e_stop="87939" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84077" stop="84255"/>
              <exon start="85256" stop="85505"/>
              <exon start="85864" stop="85987"/>
              <exon start="87742" stop="87939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84080" stop="84255"/>
              <exon start="85256" stop="85505"/>
              <exon start="85864" stop="85971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84085" stop="84255"/>
              <exon start="85256" stop="85505"/>
              <exon start="85864" stop="85913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337297" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACAAGTATAGCTCTCAACACCATCACCGAAAGAGAGAAAACCCACACCATTATACACGCATTTTCACACAGTAGAAGGTGAAAAATCATGAAGGAAGAAGCTATAAGCTCTTCCCATGATCCTCAATTGCCGCCCAAATCATCGTCTCCTCCCCCTATCCCTACACCTGCTGCTAG : TTCCGTAGGGGCATCATCTCCAGCAGTTCCAACAAATGCTGGGGGCACAGATTGGTTTGCACAAGCACAGGGTTCAAAAGCAGCTTCACTTTCCCGTATTGGTTCACAGCCCATGTGGACTTCAGTTAGCAATAGTGCTGGTGGTTCTGCACTAGGATCATCACAACCTTCATGTAGACCATGGGAAAGGGGTGATCTATTGAGGCGTCTGTCCACTTTCCAACCCACAAACTGGTTTGGGAAGCCAAAG : GCTTCAAGCTCACTGGCTTGTGCTAGAAGAGGCTGGGTGAATGTGGATGCTGATACGATTGAGTGTGAAGCTTGTGGTGCTAATCTGAGATTCGTTTCTTCTGCAACATGGACCTCTGGTGAAG : CTGATATCGCGGGGGAAGAATTTGCAAAGAAACTTGATGAAGGGCACAAGGCCACTTGCCCTTGGCGAGGAAACAGCTGTGCAGAAAGCTTGGTCCAGTTCCCTCCTACACCACCATCAGCCTTAATTGGTGGTTATAAGGATCGATGTGATGGATTGCTTCAGTTTCCTTCACTTCCAATAGTGGCTGCATCTGCAA</gDNA_template>
            <first_frame> Q  T  S  I  A  L  N  T  I  T  E  R  E  K  T  H  T  I  I  H  A  F  S  H  S  R  R  *  K  I  M  K  E  E  A  I  S  S  S  H  D  P  Q  L  P  P  K  S  S  S  P  P  P  I  P  T  P  A  A  S :   S  V  G  A  S  S  P  A  V  P  T  N  A  G  G  T  D  W  F  A  Q  A  Q  G  S  K  A  A  S  L  S  R  I  G  S  Q  P  M  W  T  S  V  S  N  S  A  G  G  S  A  L  G  S  S  Q  P  S  C  R  P  W  E  R  G  D  L  L  R  R  L  S  T  F  Q  P  T  N  W  F  G  K  P  K  :  A  S  S  S  L  A  C  A  R  R  G  W  V  N  V  D  A  D  T  I  E  C  E  A  C  G  A  N  L  R  F  V  S  S  A  T  W  T  S  G  E   : A  D  I  A  G  E  E  F  A  K  K  L  D  E  G  H  K  A  T  C  P  W  R  G  N  S  C  A  E  S  L  V  Q  F  P  P  T  P  P  S  A  L  I  G  G  Y  K  D  R  C  D  G  L  L  Q  F  P  S  L  P  I  V  A  A  S  A  </first_frame>
            <second_frame>  K  Q  V  *  L  S  T  P  S  P  K  E  R  K  P  T  P  L  Y  T  H  F  H  T  V  E  G  E  K  S  *  R  K  K  L  *  A  L  P  M  I  L  N  C  R  P  N  H  R  L  L  P  L  S  L  H  L  L  L   : V  P  *  G  H  H  L  Q  Q  F  Q  Q  M  L  G  A  Q  I  G  L  H  K  H  R  V  Q  K  Q  L  H  F  P  V  L  V  H  S  P  C  G  L  Q  L  A  I  V  L  V  V  L  H  *  D  H  H  N  L  H  V  D  H  G  K  G  V  I  Y  *  G  V  C  P  L  S  N  P  Q  T  G  L  G  S  Q  R :   L  Q  A  H  W  L  V  L  E  E  A  G  *  M  W  M  L  I  R  L  S  V  K  L  V  V  L  I  *  D  S  F  L  L  Q  H  G  P  L  V  K  :  L  I  S  R  G  K  N  L  Q  R  N  L  M  K  G  T  R  P  L  A  L  G  E  E  T  A  V  Q  K  A  W  S  S  S  L  L  H  H  H  Q  P  *  L  V  V  I  R  I  D  V  M  D  C  F  S  F  L  H  F  Q  *  W  L  H  L  Q </second_frame>
            <third_frame>   N  K  Y  S  S  Q  H  H  H  R  K  R  E  N  P  H  H  Y  T  R  I  F  T  Q  *  K  V  K  N  H  E  G  R  S  Y  K  L  F  P  *  S  S  I  A  A  Q  I  I  V  S  S  P  Y  P  Y  T  C  C  *  :  F  R  R  G  I  I  S  S  S  S  N  K  C  W  G  H  R  L  V  C  T  S  T  G  F  K  S  S  F  T  F  P  Y  W  F  T  A  H  V  D  F  S  *  Q  *  C  W  W  F  C  T  R  I  I  T  T  F  M  *  T  M  G  K  G  *  S  I  E  A  S  V  H  F  P  T  H  K  L  V  W  E  A  K   : G  F  K  L  T  G  L  C  *  K  R  L  G  E  C  G  C  *  Y  D  *  V  *  S  L  W  C  *  S  E  I  R  F  F  C  N  M  D  L  W  *  S :   *  Y  R  G  G  R  I  C  K  E  T  *  *  R  A  Q  G  H  L  P  L  A  R  K  Q  L  C  R  K  L  G  P  V  P  S  Y  T  T  I  S  L  N  W  W  L  *  G  S  M  *  W  I  A  S  V  S  F  T  S  N  S  G  C  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84161" stop="84255"/>
                    <exon start="85256" stop="85505"/>
                    <exon start="85864" stop="85987"/>
                    <exon start="87742" stop="87938"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIMKEEAISSSHDPQLPPKSSSPPPIPTPAASSVGASSPAVPTNAGGTDWFAQAQGSKAASLSRIGSQPMWTSVSNSAGGSALGSSQPSCRPWERGDLLRRLSTFQPTNWFGKPKASSSLACARRGWVNVDADTIECEACGANLRFVSSATWTSGEADIAGEEFAKKLDEGHKATCPWRGNSCAESLVQFPPTPPSALIGGYKDRCDGLLQFPSLPIVAASA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="88610" PGL_stop="89168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88610" e_stop="89168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="88610" e_stop="89168" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88610" stop="89168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249201" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGATGAGGCTGCAACAAATGATGTGGGAAGGTCTTTGTCAAATATAGGAGTAGATCTGAATCTCACAATGGCTGGTGGATTATCCTCTTCACAGGTGAACATGGATGCAAAGCCTGAACAATTCGAAGATGGACATAAACGAAGATATCCAGTTACTGGGCAGCCTTCAAGCAGTGAAGTTGGTGGTCAAGCAGCTTCATATGAATCTCGAGGCCCTAGTTCCCGCAAACGAAACTTAGAGGAAGGTGGAAGCACGGTTGACAGGCCACAATTGCCTCTACAACCGGCTGATAGTGTTGAAGGCACTGTGATAGACCGTGACGGAGATGAAGTAAATGATGGTAGTCAGTACTCAGCTGGCCCATCAAAGCGCCCATGTCAGTCTGATGCCTTCGGGACCCACCATACTTCATATGGCAAGGATTCATCAGGTGCTGGTCCTAGCCTGTCACTTGGTTTTGAGATTGGTACAAGTGCTCCCAGAGATGATACCTTTGGCCGAAGACACGAACAGCTAACTGGTGTGCCCTCTACTCGAGACTCAACACATGTTTCAT</gDNA_template>
            <first_frame> L  D  E  A  A  T  N  D  V  G  R  S  L  S  N  I  G  V  D  L  N  L  T  M  A  G  G  L  S  S  S  Q  V  N  M  D  A  K  P  E  Q  F  E  D  G  H  K  R  R  Y  P  V  T  G  Q  P  S  S  S  E  V  G  G  Q  A  A  S  Y  E  S  R  G  P  S  S  R  K  R  N  L  E  E  G  G  S  T  V  D  R  P  Q  L  P  L  Q  P  A  D  S  V  E  G  T  V  I  D  R  D  G  D  E  V  N  D  G  S  Q  Y  S  A  G  P  S  K  R  P  C  Q  S  D  A  F  G  T  H  H  T  S  Y  G  K  D  S  S  G  A  G  P  S  L  S  L  G  F  E  I  G  T  S  A  P  R  D  D  T  F  G  R  R  H  E  Q  L  T  G  V  P  S  T  R  D  S  T  H  V  S  </first_frame>
            <second_frame>  L  M  R  L  Q  Q  M  M  W  E  G  L  C  Q  I  *  E  *  I  *  I  S  Q  W  L  V  D  Y  P  L  H  R  *  T  W  M  Q  S  L  N  N  S  K  M  D  I  N  E  D  I  Q  L  L  G  S  L  Q  A  V  K  L  V  V  K  Q  L  H  M  N  L  E  A  L  V  P  A  N  E  T  *  R  K  V  E  A  R  L  T  G  H  N  C  L  Y  N  R  L  I  V  L  K  A  L  *  *  T  V  T  E  M  K  *  M  M  V  V  S  T  Q  L  A  H  Q  S  A  H  V  S  L  M  P  S  G  P  T  I  L  H  M  A  R  I  H  Q  V  L  V  L  A  C  H  L  V  L  R  L  V  Q  V  L  P  E  M  I  P  L  A  E  D  T  N  S  *  L  V  C  P  L  L  E  T  Q  H  M  F  H </second_frame>
            <third_frame>   *  *  G  C  N  K  *  C  G  K  V  F  V  K  Y  R  S  R  S  E  S  H  N  G  W  W  I  I  L  F  T  G  E  H  G  C  K  A  *  T  I  R  R  W  T  *  T  K  I  S  S  Y  W  A  A  F  K  Q  *  S  W  W  S  S  S  F  I  *  I  S  R  P  *  F  P  Q  T  K  L  R  G  R  W  K  H  G  *  Q  A  T  I  A  S  T  T  G  *  *  C  *  R  H  C  D  R  P  *  R  R  *  S  K  *  W  *  S  V  L  S  W  P  I  K  A  P  M  S  V  *  C  L  R  D  P  P  Y  F  I  W  Q  G  F  I  R  C  W  S  *  P  V  T  W  F  *  D  W  Y  K  C  S  Q  R  *  Y  L  W  P  K  T  R  T  A  N  W  C  A  L  Y  S  R  L  N  T  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88610" stop="89167"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDEAATNDVGRSLSNIGVDLNLTMAGGLSSSQVNMDAKPEQFEDGHKRRYPVTGQPSSSEVGGQAASYESRGPSSRKRNLEEGGSTVDRPQLPLQPADSVEGTVIDRDGDEVNDGSQYSAGPSKRPCQSDAFGTHHTSYGKDSSGAGPSLSLGFEIGTSAPRDDTFGRRHEQLTGVPSTRDSTHVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="89224" PGL_stop="89722"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89224" e_stop="89722"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89224" e_stop="89722" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89224" stop="89722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240225" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCTTCCCGGAGACTTTGATGATGTTCATTTCCCTTCTACATCTATGTTAAGAAGTGCAGACCCAGTGGAAACTTCAGAATTGAACTACAGTAACCAAGCACAACAAAGTACTTGTCCGGCTGTGGTCAGGAGTGCTGGTGAAATGGGTGTTAGTAGCACAAATGATGAAGAAGTCGTGAATGCTGATACTGCCACTGCCAATGTGAGGGATGGCCCTAGCTTTGGAATCAGTGGAGGAAGTATTGGAATGGGTGCTAGTCATGAAGCTGAAATCCATGGGACAGATGCTTCAGTGCATAGAGCAGATAGCGTTGCTGGTGAGGTAGAAGCGGTTGCTGAAATTACTGAAAATCAGGGGCAAACAGGTGAATTTGCTCCAGATCCAGGACTTATGGGTGACTATGTCCCTGAAGAGGTGGACCGTGGAGATCCTAATGGTGATAGTCAAGATCTGACGTCTCGTTCAGTGGGAAGGGCTGATAGTGGCTCAAAAGTT</gDNA_template>
            <first_frame> E  S  S  R  R  L  *  *  C  S  F  P  F  Y  I  Y  V  K  K  C  R  P  S  G  N  F  R  I  E  L  Q  *  P  S  T  T  K  Y  L  S  G  C  G  Q  E  C  W  *  N  G  C  *  *  H  K  *  *  R  S  R  E  C  *  Y  C  H  C  Q  C  E  G  W  P  *  L  W  N  Q  W  R  K  Y  W  N  G  C  *  S  *  S  *  N  P  W  D  R  C  F  S  A  *  S  R  *  R  C  W  *  G  R  S  G  C  *  N  Y  *  K  S  G  A  N  R  *  I  C  S  R  S  R  T  Y  G  *  L  C  P  *  R  G  G  P  W  R  S  *  W  *  *  S  R  S  D  V  S  F  S  G  K  G  *  *  W  L  K  S  </first_frame>
            <second_frame>  N  L  P  G  D  F  D  D  V  H  F  P  S  T  S  M  L  R  S  A  D  P  V  E  T  S  E  L  N  Y  S  N  Q  A  Q  Q  S  T  C  P  A  V  V  R  S  A  G  E  M  G  V  S  S  T  N  D  E  E  V  V  N  A  D  T  A  T  A  N  V  R  D  G  P  S  F  G  I  S  G  G  S  I  G  M  G  A  S  H  E  A  E  I  H  G  T  D  A  S  V  H  R  A  D  S  V  A  G  E  V  E  A  V  A  E  I  T  E  N  Q  G  Q  T  G  E  F  A  P  D  P  G  L  M  G  D  Y  V  P  E  E  V  D  R  G  D  P  N  G  D  S  Q  D  L  T  S  R  S  V  G  R  A  D  S  G  S  K  V </second_frame>
            <third_frame>   I  F  P  E  T  L  M  M  F  I  S  L  L  H  L  C  *  E  V  Q  T  Q  W  K  L  Q  N  *  T  T  V  T  K  H  N  K  V  L  V  R  L  W  S  G  V  L  V  K  W  V  L  V  A  Q  M  M  K  K  S  *  M  L  I  L  P  L  P  M  *  G  M  A  L  A  L  E  S  V  E  E  V  L  E  W  V  L  V  M  K  L  K  S  M  G  Q  M  L  Q  C  I  E  Q  I  A  L  L  V  R  *  K  R  L  L  K  L  L  K  I  R  G  K  Q  V  N  L  L  Q  I  Q  D  L  W  V  T  M  S  L  K  R  W  T  V  E  I  L  M  V  I  V  K  I  *  R  L  V  Q  W  E  G  L  I  V  A  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89225" stop="89722"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLPGDFDDVHFPSTSMLRSADPVETSELNYSNQAQQSTCPAVVRSAGEMGVSSTNDEEVVNADTATANVRDGPSFGISGGSIGMGASHEAEIHGTDASVHRADSVAGEVEAVAEITENQGQTGEFAPDPGLMGDYVPEEVDRGDPNGDSQDLTSRSVGRADSGSKV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="90590" PGL_stop="93453"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90590" e_stop="90669"/>
            <exon e_start="91181" e_stop="91283"/>
            <exon e_start="91724" e_stop="91770"/>
            <exon e_start="91848" e_stop="92101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.461" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90590" e_stop="90669" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.798">
            <gDNA_intron_boundary i_start="90670" i_stop="91180" i_length="511"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91181" e_stop="91283" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91284" i_stop="91723" i_length="440"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91724" e_stop="91770" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.461">
            <gDNA_intron_boundary i_start="91771" i_stop="91847" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="91848" e_stop="92101" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90590" stop="90669"/>
              <exon start="91181" stop="91283"/>
              <exon start="91724" stop="91770"/>
              <exon start="91848" stop="92101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90591" stop="90669"/>
              <exon start="91181" stop="91283"/>
              <exon start="91724" stop="91770"/>
              <exon start="91848" stop="92087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335774" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCTTTGGATTCTTTCCAGTCACTTGGACATATTCCAGTCCAAACTGTTGAATCTGAATCAGCTGCATCTCTGTACAAG : GATGATCATCGTGCACCAGGTAGGAAGCTCTTGGCGCGCCACTCTTTTAGCAAACATCATGGACACAACTGAATGTGAAAGTAGGCGTGAGACTTGCAATCTG : GGCTTGAACCAGCAATGTCGAAGTACCCCAATGGTCAACTTTGCAGT : CTAGTTATATATGCGGAGTTGTGAAGGATATTCTAGCTATATTCTGGATTTTCGTGGATTCCCTTGCTTTTCTTAGTTCGAACTATTAATAATGCCTCAAATGAAGAGGCTGATTTAGTTGAGGATACTTTTCTGTTTAATGATTTAGTAGGTTTGGCTTTCAGACATCCTGAAATTTGAGACTATGAAGTTGAGCGAGTAATTCTGTAAAACTTATAAATGCTCAAGCAATATTTATATGAAGCATTTGTCCA</gDNA_template>
            <first_frame> M  L  W  I  L  S  S  H  L  D  I  F  Q  S  K  L  L  N  L  N  Q  L  H  L  C  T  R :   M  I  I  V  H  Q  V  G  S  S  W  R  A  T  L  L  A  N  I  M  D  T  T  E  C  E  S  R  R  E  T  C  N  L  :  G  L  N  Q  Q  C  R  S  T  P  M  V  N  F  A  V :   *  L  Y  M  R  S  C  E  G  Y  S  S  Y  I  L  D  F  R  G  F  P  C  F  S  *  F  E  L  L  I  M  P  Q  M  K  R  L  I  *  L  R  I  L  F  C  L  M  I  *  *  V  W  L  S  D  I  L  K  F  E  T  M  K  L  S  E  *  F  C  K  T  Y  K  C  S  S  N  I  Y  M  K  H  L  S  </first_frame>
            <second_frame>  C  F  G  F  F  P  V  T  W  T  Y  S  S  P  N  C  *  I  *  I  S  C  I  S  V  Q   : G  *  S  S  C  T  R  *  E  A  L  G  A  P  L  F  *  Q  T  S  W  T  Q  L  N  V  K  V  G  V  R  L  A  I  W :   A  *  T  S  N  V  E  V  P  Q  W  S  T  L  Q   : S  S  Y  I  C  G  V  V  K  D  I  L  A  I  F  W  I  F  V  D  S  L  A  F  L  S  S  N  Y  *  *  C  L  K  *  R  G  *  F  S  *  G  Y  F  S  V  *  *  F  S  R  F  G  F  Q  T  S  *  N  L  R  L  *  S  *  A  S  N  S  V  K  L  I  N  A  Q  A  I  F  I  *  S  I  C  P </second_frame>
            <third_frame>   A  L  D  S  F  Q  S  L  G  H  I  P  V  Q  T  V  E  S  E  S  A  A  S  L  Y  K  :  D  D  H  R  A  P  G  R  K  L  L  A  R  H  S  F  S  K  H  H  G  H  N  *  M  *  K  *  A  *  D  L  Q  S   : G  L  E  P  A  M  S  K  Y  P  N  G  Q  L  C  S  :  L  V  I  Y  A  E  L  *  R  I  F  *  L  Y  S  G  F  S  W  I  P  L  L  F  L  V  R  T  I  N  N  A  S  N  E  E  A  D  L  V  E  D  T  F  L  F  N  D  L  V  G  L  A  F  R  H  P  E  I  *  D  Y  E  V  E  R  V  I  L  *  N  L  *  M  L  K  Q  Y  L  Y  E  A  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90590" stop="90669"/>
                    <exon start="91181" stop="91283"/>
                    <exon start="91724" stop="91770"/>
                    <exon start="91848" stop="91851"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLWILSSHLDIFQSKLLNLNQLHLCTRMIIVHQVGSSWRATLLANIMDTTECESRRETCNLGLNQQCRSTPMVNFAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92351" e_stop="92365"/>
            <exon e_start="93017" e_stop="93450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.913" acc_prob="0.000" e_score="0.533"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.533">
            <gDNA_exon_boundary e_start="92351" e_stop="92365" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.913" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92366" i_stop="93016" i_length="651"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="93017" e_stop="93450" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92351" stop="92365"/>
              <exon start="93017" stop="93450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695335" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92352" stop="92365"/>
              <exon start="93017" stop="93405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232506" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCATTTATTGAGG : TTTGAAGGTCACAAATTTACCAGATATGATATTTCAAGACAAAACAACATCCTTTTCACGAAGAAAAAAAGAAGAGAAAAAGTAAAGCAACATCCTTGATTGTACCTAATTATCTAATTTATTAGCATTAGCCGTGTACATGATATAGTAAAAACCAACACCAACAACCAAAACTAAAGAGGGATCAGTTTCAAAATCTCAATAGTTAGCAATCTCAATTCCCCCTTTGTTGTTGTACGATCCAACTGGTGCATCATACTTGCTAAAAAGCCGATAAGACGAAAGCAACGAAAGCCCTGCATAACAAAGGCTTACTATGAAAGTAATGGACACAGATGCTGTAGCTTTGTGGCAAAAACCTCGAAATGAACCACATGATTCACTCCATGAAACTTCTGGATCTCCTTTATATGCTAAATACATCACCTCCGTCG</gDNA_template>
            <first_frame> F  H  L  L  R  :  F  E  G  H  K  F  T  R  Y  D  I  S  R  Q  N  N  I  L  F  T  K  K  K  R  R  E  K  V  K  Q  H  P  *  L  Y  L  I  I  *  F  I  S  I  S  R  V  H  D  I  V  K  T  N  T  N  N  Q  N  *  R  G  I  S  F  K  I  S  I  V  S  N  L  N  S  P  F  V  V  V  R  S  N  W  C  I  I  L  A  K  K  P  I  R  R  K  Q  R  K  P  C  I  T  K  A  Y  Y  E  S  N  G  H  R  C  C  S  F  V  A  K  T  S  K  *  T  T  *  F  T  P  *  N  F  W  I  S  F  I  C  *  I  H  H  L  R   </first_frame>
            <second_frame>  F  I  Y  *  G :   L  K  V  T  N  L  P  D  M  I  F  Q  D  K  T  T  S  F  S  R  R  K  K  E  E  K  K  *  S  N  I  L  D  C  T  *  L  S  N  L  L  A  L  A  V  Y  M  I  *  *  K  P  T  P  T  T  K  T  K  E  G  S  V  S  K  S  Q  *  L  A  I  S  I  P  P  L  L  L  Y  D  P  T  G  A  S  Y  L  L  K  S  R  *  D  E  S  N  E  S  P  A  *  Q  R  L  T  M  K  V  M  D  T  D  A  V  A  L  W  Q  K  P  R  N  E  P  H  D  S  L  H  E  T  S  G  S  P  L  Y  A  K  Y  I  T  S  V  </second_frame>
            <third_frame>   S  F  I  E   : V  *  R  S  Q  I  Y  Q  I  *  Y  F  K  T  K  Q  H  P  F  H  E  E  K  K  K  R  K  S  K  A  T  S  L  I  V  P  N  Y  L  I  Y  *  H  *  P  C  T  *  Y  S  K  N  Q  H  Q  Q  P  K  L  K  R  D  Q  F  Q  N  L  N  S  *  Q  S  Q  F  P  L  C  C  C  T  I  Q  L  V  H  H  T  C  *  K  A  D  K  T  K  A  T  K  A  L  H  N  K  G  L  L  *  K  *  W  T  Q  M  L  *  L  C  G  K  N  L  E  M  N  H  M  I  H  S  M  K  L  L  D  L  L  Y  M  L  N  T  S  P  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0018L21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="92342" e_stop="92365"/>
            <exon e_start="93024" e_stop="93453"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.913" acc_prob="0.000" e_score="0.542"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.542">
            <gDNA_exon_boundary e_start="92342" e_stop="92365" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.913" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92366" i_stop="93023" i_length="658"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="93024" e_stop="93453" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92342" stop="92365"/>
              <exon start="93024" stop="93453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92345" stop="92365"/>
              <exon start="93024" stop="93418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221452" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGGCAATTTCATTTATTGAGG : GTCACAAATTTACCAGATATGATATTTCAAGACAAAACAACATCCTTTTCACGAAGAAAAAAAGAAGAGAAAAAGTAAAGCAACATCCTTGATTGTACCTAATTATCTAATTTATTAGCATTAGCCGTGTACATGATATAGTAAAAACCAACACCAACAACCAAAACTAAAGAGGGATCAGTTTCAAAATCTCAATAGTTAGCAATCTCAATTCCCCCTTTGTTGTTGTACGATCCAACTGGTGCATCATACTTGCTAAAAAGCCGATAAGACGAAAGCAACGAAAGCCCTGCATAACAAAGGCTTACTATGAAAGTAATGGACACAGATGCTGTAGCTTTGTGGCAAAAACCTCGAAATGAACCACATGATTCACTCCATGAAACTTCTGGATCTCCTTTATATGCTAAATACATCACCTCCGTCGATA</gDNA_template>
            <first_frame> V  W  Q  F  H  L  L  R  :  V  T  N  L  P  D  M  I  F  Q  D  K  T  T  S  F  S  R  R  K  K  E  E  K  K  *  S  N  I  L  D  C  T  *  L  S  N  L  L  A  L  A  V  Y  M  I  *  *  K  P  T  P  T  T  K  T  K  E  G  S  V  S  K  S  Q  *  L  A  I  S  I  P  P  L  L  L  Y  D  P  T  G  A  S  Y  L  L  K  S  R  *  D  E  S  N  E  S  P  A  *  Q  R  L  T  M  K  V  M  D  T  D  A  V  A  L  W  Q  K  P  R  N  E  P  H  D  S  L  H  E  T  S  G  S  P  L  Y  A  K  Y  I  T  S  V  D  </first_frame>
            <second_frame>  F  G  N  F  I  Y  *  G :   S  Q  I  Y  Q  I  *  Y  F  K  T  K  Q  H  P  F  H  E  E  K  K  K  R  K  S  K  A  T  S  L  I  V  P  N  Y  L  I  Y  *  H  *  P  C  T  *  Y  S  K  N  Q  H  Q  Q  P  K  L  K  R  D  Q  F  Q  N  L  N  S  *  Q  S  Q  F  P  L  C  C  C  T  I  Q  L  V  H  H  T  C  *  K  A  D  K  T  K  A  T  K  A  L  H  N  K  G  L  L  *  K  *  W  T  Q  M  L  *  L  C  G  K  N  L  E  M  N  H  M  I  H  S  M  K  L  L  D  L  L  Y  M  L  N  T  S  P  P  S  I </second_frame>
            <third_frame>   L  A  I  S  F  I  E   : G  H  K  F  T  R  Y  D  I  S  R  Q  N  N  I  L  F  T  K  K  K  R  R  E  K  V  K  Q  H  P  *  L  Y  L  I  I  *  F  I  S  I  S  R  V  H  D  I  V  K  T  N  T  N  N  Q  N  *  R  G  I  S  F  K  I  S  I  V  S  N  L  N  S  P  F  V  V  V  R  S  N  W  C  I  I  L  A  K  K  P  I  R  R  K  Q  R  K  P  C  I  T  K  A  Y  Y  E  S  N  G  H  R  C  C  S  F  V  A  K  T  S  K  *  T  T  *  F  T  P  *  N  F  W  I  S  F  I  C  *  I  H  H  L  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0018L21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="91254" e_stop="91283"/>
            <exon e_start="91724" e_stop="92101"/>
            <exon e_start="93076" e_stop="93097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="1.000" e_score="0.967"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.818"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="91254" e_stop="91283" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91284" i_stop="91723" i_length="440"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91724" e_stop="92101" e_length="378"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92102" i_stop="93075" i_length="974"/>
          </intron>
          <exon e_serial="3" e_score="0.818">
            <gDNA_exon_boundary e_start="93076" e_stop="93097" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91254" stop="91283"/>
              <exon start="91724" stop="92101"/>
              <exon start="93076" stop="93097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGAAAGTAGGCGTGAGACTTGCAATCTG : GGCTTGAACCAGCAATGTCGAAGTACCCCAATGGTCAACTTTGCAGTGTATGTCAATATACATCAAACTGTTTTCTTTCATAATGACTCATTGTTGTCTCACTAAAGATGAAATACTGTTACAGCTAGTTATATATGCGGAGTTGTGAAGGATATTCTAGCTATATTCTGGATTTTCGTGGATTCCCTTGCTTTTCTTAGTTCGAACTATTAATAATGCCTCAAATGAAGAGGCTGATTTAGTTGAGGATACTTTTCTGTTTAATGATTTAGTAGGTTTGGCTTTCAGACATCCTGAAATTTGAGACTATGAAGTTGAGCGAGTAATTCTGTAAAACTTATAAATGCTCAAGCAATATTTATATGAAGCATTTGTCCA : GAAGAAAAAAAGAAGAGAAAAA</gDNA_template>
            <first_frame> C  E  S  R  R  E  T  C  N  L  :  G  L  N  Q  Q  C  R  S  T  P  M  V  N  F  A  V  Y  V  N  I  H  Q  T  V  F  F  H  N  D  S  L  L  S  H  *  R  *  N  T  V  T  A  S  Y  I  C  G  V  V  K  D  I  L  A  I  F  W  I  F  V  D  S  L  A  F  L  S  S  N  Y  *  *  C  L  K  *  R  G  *  F  S  *  G  Y  F  S  V  *  *  F  S  R  F  G  F  Q  T  S  *  N  L  R  L  *  S  *  A  S  N  S  V  K  L  I  N  A  Q  A  I  F  I  *  S  I  C  P  :  E  E  K  K  K  R  K  </first_frame>
            <second_frame>  V  K  V  G  V  R  L  A  I  W :   A  *  T  S  N  V  E  V  P  Q  W  S  T  L  Q  C  M  S  I  Y  I  K  L  F  S  F  I  M  T  H  C  C  L  T  K  D  E  I  L  L  Q  L  V  I  Y  A  E  L  *  R  I  F  *  L  Y  S  G  F  S  W  I  P  L  L  F  L  V  R  T  I  N  N  A  S  N  E  E  A  D  L  V  E  D  T  F  L  F  N  D  L  V  G  L  A  F  R  H  P  E  I  *  D  Y  E  V  E  R  V  I  L  *  N  L  *  M  L  K  Q  Y  L  Y  E  A  F  V  Q :   K  K  K  R  R  E  K </second_frame>
            <third_frame>   *  K  *  A  *  D  L  Q  S   : G  L  E  P  A  M  S  K  Y  P  N  G  Q  L  C  S  V  C  Q  Y  T  S  N  C  F  L  S  *  *  L  I  V  V  S  L  K  M  K  Y  C  Y  S  *  L  Y  M  R  S  C  E  G  Y  S  S  Y  I  L  D  F  R  G  F  P  C  F  S  *  F  E  L  L  I  M  P  Q  M  K  R  L  I  *  L  R  I  L  F  C  L  M  I  *  *  V  W  L  S  D  I  L  K  F  E  T  M  K  L  S  E  *  F  C  K  T  Y  K  C  S  S  N  I  Y  M  K  H  L  S   : R  R  K  K  E  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0018L21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="94644" PGL_stop="91758"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94644" e_stop="94319"/>
            <exon e_start="93731" e_stop="93614"/>
            <exon e_start="93487" e_stop="93017"/>
            <exon e_start="92951" e_stop="92938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="0.987"/>
          <exon-intron don_prob="0.973" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.774" e_score="0.998"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="94644" e_stop="94319" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="94318" i_stop="93732" i_length="587"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93731" e_stop="93614" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.992">
            <gDNA_intron_boundary i_start="93613" i_stop="93488" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="93487" e_stop="93017" e_length="471"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.774">
            <gDNA_intron_boundary i_start="93016" i_stop="92952" i_length="65"/>
          </intron>
          <exon e_serial="4" e_score="0.500">
            <gDNA_exon_boundary e_start="92951" e_stop="92938" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94644" stop="94319"/>
              <exon start="93731" stop="93614"/>
              <exon start="93487" stop="93139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94621" stop="94319"/>
              <exon start="93731" stop="93614"/>
              <exon start="93487" stop="93115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94608" stop="94319"/>
              <exon start="93731" stop="93614"/>
              <exon start="93487" stop="93018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94596" stop="94319"/>
              <exon start="93731" stop="93614"/>
              <exon start="93487" stop="93044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94583" stop="94319"/>
              <exon start="93731" stop="93614"/>
              <exon start="93487" stop="93397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93618" stop="93614"/>
              <exon start="93487" stop="93017"/>
              <exon start="92951" stop="92938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232286" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTAGTAGTGCTACCTATCATTCACCCAATTTCTTCTCTTACAATAAAATCATTTTTTAGAAAGGAAAAAAAAAAAGCCAAAAAGCCAAAAGAGAGTACAATATTACATAATGAAAACTAGTAGTACAAATATGGCTGGAAGTAGTCCACTACAAAAGAGAGAATTAGAAGATGACAATGAAAGTAGTAGCAGTATGAGAACAGCTGAGACTATGCTGCGTTTGTTACCTATGGGGCTTTGTGTTGTGGCTCTTGTTATTATGCTCAAAAATCAACAAACTAATGATTATGGTTCCATTACTTACTCTGATCTTGGAACCTTTAG : GTATTTAGTACATGCAAATGGAATTTGTGCAGGTTATTCACTTTTATCAGCAATTGTAGCAGTCGTACCTCGTCCCATAACGATGTCTAGAGCCTGGACCTTCTTCCTCCTTGATCAG : TTATTGACATATGCAATACTGGCTGCTGGAGCTGTATCGACGGAGGTGATGTATTTAGCATATAAAGGAGATCCAGAAGTTTCATGGAGTGAATCATGTGGTTCATTTCGAGGTTTTTGCCACAAAGCTACAGCATCTGTGTCCATTACTTTCATAGTAAGCCTTTGTTATGCAGGGCTTTCGTTGCTTTCGTCTTATCGGCTTTTTAGCAAGTATGATGCACCAGTTGGATCGTACAACAACAAAGGGGGAATTGAGATTGCTAACTATTGAGATTTTGAAACTGATCCCTCTTTAGTTTTGGTTGTTGGTGTTGGTTTTTACTATATCATGTACACGGCTAATGCTAATAAATTAGATAATTAGGTACAATCAAGGATGTTGCTTTACTTTTTCTCTTCTTTTTTTCTTCGTGAAAAGGATGTTGTTTTGTCTTGAAATATCATATCTGGTAAATTTGTGACCTTCAAA : GGAAACGATGAAAG</gDNA_template>
            <first_frame> Y  *  *  C  Y  L  S  F  T  Q  F  L  L  L  Q  *  N  H  F  L  E  R  K  K  K  K  P  K  S  Q  K  R  V  Q  Y  Y  I  M  K  T  S  S  T  N  M  A  G  S  S  P  L  Q  K  R  E  L  E  D  D  N  E  S  S  S  S  M  R  T  A  E  T  M  L  R  L  L  P  M  G  L  C  V  V  A  L  V  I  M  L  K  N  Q  Q  T  N  D  Y  G  S  I  T  Y  S  D  L  G  T  F  R :   Y  L  V  H  A  N  G  I  C  A  G  Y  S  L  L  S  A  I  V  A  V  V  P  R  P  I  T  M  S  R  A  W  T  F  F  L  L  D  Q  :  L  L  T  Y  A  I  L  A  A  G  A  V  S  T  E  V  M  Y  L  A  Y  K  G  D  P  E  V  S  W  S  E  S  C  G  S  F  R  G  F  C  H  K  A  T  A  S  V  S  I  T  F  I  V  S  L  C  Y  A  G  L  S  L  L  S  S  Y  R  L  F  S  K  Y  D  A  P  V  G  S  Y  N  N  K  G  G  I  E  I  A  N  Y  *  D  F  E  T  D  P  S  L  V  L  V  V  G  V  G  F  Y  Y  I  M  Y  T  A  N  A  N  K  L  D  N  *  V  Q  S  R  M  L  L  Y  F  F  S  S  F  F  L  R  E  K  D  V  V  L  S  *  N  I  I  S  G  K  F  V  T  F  K  :  G  N  D  E   </first_frame>
            <second_frame>  T  S  S  A  T  Y  H  S  P  N  F  F  S  Y  N  K  I  I  F  *  K  G  K  K  K  S  Q  K  A  K  R  E  Y  N  I  T  *  *  K  L  V  V  Q  I  W  L  E  V  V  H  Y  K  R  E  N  *  K  M  T  M  K  V  V  A  V  *  E  Q  L  R  L  C  C  V  C  Y  L  W  G  F  V  L  W  L  L  L  L  C  S  K  I  N  K  L  M  I  M  V  P  L  L  T  L  I  L  E  P  L   : G  I  *  Y  M  Q  M  E  F  V  Q  V  I  H  F  Y  Q  Q  L  *  Q  S  Y  L  V  P  *  R  C  L  E  P  G  P  S  S  S  L  I  S :   Y  *  H  M  Q  Y  W  L  L  E  L  Y  R  R  R  *  C  I  *  H  I  K  E  I  Q  K  F  H  G  V  N  H  V  V  H  F  E  V  F  A  T  K  L  Q  H  L  C  P  L  L  S  *  *  A  F  V  M  Q  G  F  R  C  F  R  L  I  G  F  L  A  S  M  M  H  Q  L  D  R  T  T  T  K  G  E  L  R  L  L  T  I  E  I  L  K  L  I  P  L  *  F  W  L  L  V  L  V  F  T  I  S  C  T  R  L  M  L  I  N  *  I  I  R  Y  N  Q  G  C  C  F  T  F  S  L  L  F  F  F  V  K  R  M  L  F  C  L  E  I  S  Y  L  V  N  L  *  P  S  K :   E  T  M  K  </second_frame>
            <third_frame>   L  V  V  L  P  I  I  H  P  I  S  S  L  T  I  K  S  F  F  R  K  E  K  K  K  A  K  K  P  K  E  S  T  I  L  H  N  E  N  *  *  Y  K  Y  G  W  K  *  S  T  T  K  E  R  I  R  R  *  Q  *  K  *  *  Q  Y  E  N  S  *  D  Y  A  A  F  V  T  Y  G  A  L  C  C  G  S  C  Y  Y  A  Q  K  S  T  N  *  *  L  W  F  H  Y  L  L  *  S  W  N  L  *  :  V  F  S  T  C  K  W  N  L  C  R  L  F  T  F  I  S  N  C  S  S  R  T  S  S  H  N  D  V  *  S  L  D  L  L  P  P  *  S   : V  I  D  I  C  N  T  G  C  W  S  C  I  D  G  G  D  V  F  S  I  *  R  R  S  R  S  F  M  E  *  I  M  W  F  I  S  R  F  L  P  Q  S  Y  S  I  C  V  H  Y  F  H  S  K  P  L  L  C  R  A  F  V  A  F  V  L  S  A  F  *  Q  V  *  C  T  S  W  I  V  Q  Q  Q  R  G  N  *  D  C  *  L  L  R  F  *  N  *  S  L  F  S  F  G  C  W  C  W  F  L  L  Y  H  V  H  G  *  C  *  *  I  R  *  L  G  T  I  K  D  V  A  L  L  F  L  F  F  F  S  S  *  K  G  C  C  F  V  L  K  Y  H  I  W  *  I  C  D  L  Q   : R  K  R  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94596" stop="94319"/>
                    <exon start="93731" stop="93614"/>
                    <exon start="93487" stop="93215"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHFLERKKKKPKSQKRVQYYIMKTSSTNMAGSSPLQKRELEDDNESSSSMRTAETMLRLLPMGLCVVALVIMLKNQQTNDYGSITYSDLGTFRYLVHANGICAGYSLLSAIVAVVPRPITMSRAWTFFLLDQLLTYAILAAGAVSTEVMYLAYKGDPEVSWSESCGSFRGFCHKATASVSITFIVSLCYAGLSLLSSYRLFSKYDAPVGSYNNKGGIEIANY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93098" e_stop="93076"/>
            <exon e_start="92102" e_stop="91758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.739"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.739">
            <gDNA_exon_boundary e_start="93098" e_stop="93076" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93075" i_stop="92103" i_length="973"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="92102" e_stop="91758" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93098" stop="93076"/>
              <exon start="92102" stop="91758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230072" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTCTCTTCTTTTTTTCTTC : CTGGACAAATGCTTCATATAAATATTGCTTGAGCATTTATAAGTTTTACAGAATTACTCGCTCAACTTCATAGTCTCAAATTTCAGGATGTCTGAAAGCCAAACCTACTAAATCATTAAACAGAAAAGTATCCTCAACTAAATCAGCCTCTTCATTTGAGGCATTATTAATAGTTCGAACTAAGAAAAGCAAGGGAATCCACGAAAATCCAGAATATAGCTAGAATATCCTTCACAACTCCGCATATATAACTAGCTGTAACAGTATTTCATCTTTAGTGAGACAACAATGAGTCATTATGAAAGAAAACAGTTTGATGTATATTGACATACACTGCAAAGTTGA</gDNA_template>
            <first_frame> L  F  L  F  F  F  S  S :   W  T  N  A  S  Y  K  Y  C  L  S  I  Y  K  F  Y  R  I  T  R  S  T  S  *  S  Q  I  S  G  C  L  K  A  K  P  T  K  S  L  N  R  K  V  S  S  T  K  S  A  S  S  F  E  A  L  L  I  V  R  T  K  K  S  K  G  I  H  E  N  P  E  Y  S  *  N  I  L  H  N  S  A  Y  I  T  S  C  N  S  I  S  S  L  V  R  Q  Q  *  V  I  M  K  E  N  S  L  M  Y  I  D  I  H  C  K  V   </first_frame>
            <second_frame>  F  F  S  S  F  F  L   : P  G  Q  M  L  H  I  N  I  A  *  A  F  I  S  F  T  E  L  L  A  Q  L  H  S  L  K  F  Q  D  V  *  K  P  N  L  L  N  H  *  T  E  K  Y  P  Q  L  N  Q  P  L  H  L  R  H  Y  *  *  F  E  L  R  K  A  R  E  S  T  K  I  Q  N  I  A  R  I  S  F  T  T  P  H  I  *  L  A  V  T  V  F  H  L  *  *  D  N  N  E  S  L  *  K  K  T  V  *  C  I  L  T  Y  T  A  K  L  </second_frame>
            <third_frame>   F  S  L  L  F  F  F  :  L  D  K  C  F  I  *  I  L  L  E  H  L  *  V  L  Q  N  Y  S  L  N  F  I  V  S  N  F  R  M  S  E  S  Q  T  Y  *  I  I  K  Q  K  S  I  L  N  *  I  S  L  F  I  *  G  I  I  N  S  S  N  *  E  K  Q  G  N  P  R  K  S  R  I  *  L  E  Y  P  S  Q  L  R  I  Y  N  *  L  *  Q  Y  F  I  F  S  E  T  T  M  S  H  Y  E  R  K  Q  F  D  V  Y  *  H  T  L  Q  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0018L21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="101889" PGL_stop="103215"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101889" e_stop="103215"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="101889" e_stop="103215" e_length="1327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101889" stop="102637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102069" stop="102926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102582" stop="102921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102714" stop="103215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102798" stop="103174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAAAGAGGCTCAGGCACAGATGAATGAGGAGCTTTCTGGTTGGAAGCTTGTGGTGGGAGATGTTTTCAGAGAGCCAAATCACTCGAAGTTACTGTGTGTGATGATTGGAGATGGGGTTCAAATTACTGGAATGGCAGTTGTCACTATTGTTTTTGCAGCATTTGGTTTCATGTCACCAGCTTCACGAGGCATGCTGCTAACAGGCATGATATTGCTTTATCTTTTTCTGGGAATTGCTGCTGGTTACGTTAGTGTGCGTGCTTGGAGAACAATAAAGGGTACTTCGGAAAGTTGGAGATCTGTTGCATGGTCAACTGCATGCTTCTTTCCTGGGATTGTCTTTGTCATCCTCACTGTGCTGAATTTCATCCTTTGGGGAAGCAAGAGCACTGGCGCACTCCCCATCTCATTATATTTCATTCTCATATCACTTTGGTTCTGTATTTCAGTGCCTCTCACCCTCGTGGGAGGATATTTGGGCACTCGAGCTGAGCCTATTCAATATCCAGTGAGGACTAACCAGATTCCTAGGGAGATCCCTGCACGCAAGTATCCCTCTTGGCTTCTTGTTCTTGGTGCTGGAACTCTGCCATTTGGAACCCTCTTTATTGAACTCTTCTTCATCCTCTCTAGTATTTGGCTTGGAAGATTCTACTATGTTTTCGGTTTTCTGCTTATAGTCCTCCTCCTGTTGGTTACTGTTTGTGCTGAAGTTTCAGTTGTGCTCACTTATATGCACCTTTGTGTGGAGGATTGGATGTGGTGGTGGAAAGCATTCTATGCATCAGGTTCTGTTTCTCTATATGTGTTCCTCTACTCCATCAACTACTTGGTTTTTGACCTTCAGAGCTTAAGTGGCCCAGTATCAGCTATACTTTACCTTGGCTACTCTTTGATAATGGCAGTAGCGATCATGCTTTCAACTGGCACGATTGGCTTCCTCACATCATTTTACTTTGTGCATTATCTTTTTGCATCAGTGAAGATTGACTGAACAGGTGTGCAGAGCCGCAATTATTATTGTTTAGATGGCTAAAGAAAGACCTGTTGTGCATTGTGGAACTTTACATAGTCCTACCAGAAAGAGTATCTAAAATTGCAGATGAGGGACGTTTGTACTTTTCTATTTTACTGTAATGTTCTGAGGCTAGATAATTTGTTAGTCCAAAAGCTATTGTTTAGTATTTTCATCTTTCATTGTGTTTTAATTACATTTTCCCCATATTTCTTGTATCTTTACAACCTCTACTTTCAATGGGAAAATTACCAGAAAACTCATTGTAGCTTTGAAATTGAAAAGAAAGATAGGTTTAAGGTGGTTTTGT</gDNA_template>
            <first_frame> D  K  E  A  Q  A  Q  M  N  E  E  L  S  G  W  K  L  V  V  G  D  V  F  R  E  P  N  H  S  K  L  L  C  V  M  I  G  D  G  V  Q  I  T  G  M  A  V  V  T  I  V  F  A  A  F  G  F  M  S  P  A  S  R  G  M  L  L  T  G  M  I  L  L  Y  L  F  L  G  I  A  A  G  Y  V  S  V  R  A  W  R  T  I  K  G  T  S  E  S  W  R  S  V  A  W  S  T  A  C  F  F  P  G  I  V  F  V  I  L  T  V  L  N  F  I  L  W  G  S  K  S  T  G  A  L  P  I  S  L  Y  F  I  L  I  S  L  W  F  C  I  S  V  P  L  T  L  V  G  G  Y  L  G  T  R  A  E  P  I  Q  Y  P  V  R  T  N  Q  I  P  R  E  I  P  A  R  K  Y  P  S  W  L  L  V  L  G  A  G  T  L  P  F  G  T  L  F  I  E  L  F  F  I  L  S  S  I  W  L  G  R  F  Y  Y  V  F  G  F  L  L  I  V  L  L  L  L  V  T  V  C  A  E  V  S  V  V  L  T  Y  M  H  L  C  V  E  D  W  M  W  W  W  K  A  F  Y  A  S  G  S  V  S  L  Y  V  F  L  Y  S  I  N  Y  L  V  F  D  L  Q  S  L  S  G  P  V  S  A  I  L  Y  L  G  Y  S  L  I  M  A  V  A  I  M  L  S  T  G  T  I  G  F  L  T  S  F  Y  F  V  H  Y  L  F  A  S  V  K  I  D  *  T  G  V  Q  S  R  N  Y  Y  C  L  D  G  *  R  K  T  C  C  A  L  W  N  F  T  *  S  Y  Q  K  E  Y  L  K  L  Q  M  R  D  V  C  T  F  L  F  Y  C  N  V  L  R  L  D  N  L  L  V  Q  K  L  L  F  S  I  F  I  F  H  C  V  L  I  T  F  S  P  Y  F  L  Y  L  Y  N  L  Y  F  Q  W  E  N  Y  Q  K  T  H  C  S  F  E  I  E  K  K  D  R  F  K  V  V  L  </first_frame>
            <second_frame>  I  K  R  L  R  H  R  *  M  R  S  F  L  V  G  S  L  W  W  E  M  F  S  E  S  Q  I  T  R  S  Y  C  V  *  *  L  E  M  G  F  K  L  L  E  W  Q  L  S  L  L  F  L  Q  H  L  V  S  C  H  Q  L  H  E  A  C  C  *  Q  A  *  Y  C  F  I  F  F  W  E  L  L  L  V  T  L  V  C  V  L  G  E  Q  *  R  V  L  R  K  V  G  D  L  L  H  G  Q  L  H  A  S  F  L  G  L  S  L  S  S  S  L  C  *  I  S  S  F  G  E  A  R  A  L  A  H  S  P  S  H  Y  I  S  F  S  Y  H  F  G  S  V  F  Q  C  L  S  P  S  W  E  D  I  W  A  L  E  L  S  L  F  N  I  Q  *  G  L  T  R  F  L  G  R  S  L  H  A  S  I  P  L  G  F  L  F  L  V  L  E  L  C  H  L  E  P  S  L  L  N  S  S  S  S  S  L  V  F  G  L  E  D  S  T  M  F  S  V  F  C  L  *  S  S  S  C  W  L  L  F  V  L  K  F  Q  L  C  S  L  I  C  T  F  V  W  R  I  G  C  G  G  G  K  H  S  M  H  Q  V  L  F  L  Y  M  C  S  S  T  P  S  T  T  W  F  L  T  F  R  A  *  V  A  Q  Y  Q  L  Y  F  T  L  A  T  L  *  *  W  Q  *  R  S  C  F  Q  L  A  R  L  A  S  S  H  H  F  T  L  C  I  I  F  L  H  Q  *  R  L  T  E  Q  V  C  R  A  A  I  I  I  V  *  M  A  K  E  R  P  V  V  H  C  G  T  L  H  S  P  T  R  K  S  I  *  N  C  R  *  G  T  F  V  L  F  Y  F  T  V  M  F  *  G  *  I  I  C  *  S  K  S  Y  C  L  V  F  S  S  F  I  V  F  *  L  H  F  P  H  I  S  C  I  F  T  T  S  T  F  N  G  K  I  T  R  K  L  I  V  A  L  K  L  K  R  K  I  G  L  R  W  F  C </second_frame>
            <third_frame>   *  R  G  S  G  T  D  E  *  G  A  F  W  L  E  A  C  G  G  R  C  F  Q  R  A  K  S  L  E  V  T  V  C  D  D  W  R  W  G  S  N  Y  W  N  G  S  C  H  Y  C  F  C  S  I  W  F  H  V  T  S  F  T  R  H  A  A  N  R  H  D  I  A  L  S  F  S  G  N  C  C  W  L  R  *  C  A  C  L  E  N  N  K  G  Y  F  G  K  L  E  I  C  C  M  V  N  C  M  L  L  S  W  D  C  L  C  H  P  H  C  A  E  F  H  P  L  G  K  Q  E  H  W  R  T  P  H  L  I  I  F  H  S  H  I  T  L  V  L  Y  F  S  A  S  H  P  R  G  R  I  F  G  H  S  S  *  A  Y  S  I  S  S  E  D  *  P  D  S  *  G  D  P  C  T  Q  V  S  L  L  A  S  C  S  W  C  W  N  S  A  I  W  N  P  L  Y  *  T  L  L  H  P  L  *  Y  L  A  W  K  I  L  L  C  F  R  F  S  A  Y  S  P  P  P  V  G  Y  C  L  C  *  S  F  S  C  A  H  L  Y  A  P  L  C  G  G  L  D  V  V  V  E  S  I  L  C  I  R  F  C  F  S  I  C  V  P  L  L  H  Q  L  L  G  F  *  P  S  E  L  K  W  P  S  I  S  Y  T  L  P  W  L  L  F  D  N  G  S  S  D  H  A  F  N  W  H  D  W  L  P  H  I  I  L  L  C  A  L  S  F  C  I  S  E  D  *  L  N  R  C  A  E  P  Q  L  L  L  F  R  W  L  K  K  D  L  L  C  I  V  E  L  Y  I  V  L  P  E  R  V  S  K  I  A  D  E  G  R  L  Y  F  S  I  L  L  *  C  S  E  A  R  *  F  V  S  P  K  A  I  V  *  Y  F  H  L  S  L  C  F  N  Y  I  F  P  I  F  L  V  S  L  Q  P  L  L  S  M  G  K  L  P  E  N  S  L  *  L  *  N  *  K  E  R  *  V  *  G  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101889" stop="102884"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKEAQAQMNEELSGWKLVVGDVFREPNHSKLLCVMIGDGVQITGMAVVTIVFAAFGFMSPASRGMLLTGMILLYLFLGIAAGYVSVRAWRTIKGTSESWRSVAWSTACFFPGIVFVILTVLNFILWGSKSTGALPISLYFILISLWFCISVPLTLVGGYLGTRAEPIQYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVTVCAEVSVVLTYMHLCVEDWMWWWKAFYASGSVSLYVFLYSINYLVFDLQSLSGPVSAILYLGYSLIMAVAIMLSTGTIGFLTSFYFVHYLFASVKID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102963" stop="103214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYQKEYLKLQMRDVCTFLFYCNVLRLDNLLVQKLLFSIFIFHCVLITFSPYFLYLYNLYFQWENYQKTHCSFEIEKKDRFKVVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="111415" PGL_stop="112124"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111415" e_stop="111478"/>
            <exon e_start="111610" e_stop="111747"/>
            <exon e_start="111850" e_stop="112008"/>
            <exon e_start="112111" e_stop="112124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.392" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.719" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111415" e_stop="111478" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.392">
            <gDNA_intron_boundary i_start="111479" i_stop="111609" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111610" e_stop="111747" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111748" i_stop="111849" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111850" e_stop="112008" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.719">
            <gDNA_intron_boundary i_start="112009" i_stop="112110" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112111" e_stop="112124" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111415" stop="111478"/>
              <exon start="111610" stop="111747"/>
              <exon start="111850" stop="112008"/>
              <exon start="112111" stop="112124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATATAATGGTATGGATAGAAGATATGCAGCTTCACTTACTTGAGCTTTGCAAGGCAGAAAAG : GTGTTATGGTCTGGAGTTGTTACAAACTATTCGACTTCTCCTTTTGCTGAAGAAATGTTCGAAAAAACCAAACAAATGTTAACTGAGTATGAAGTAGTGATCAACCGTTGGCCTCAGTACACCATCATTCTGGAGAAT : GCTGTTGCTAATGTAGAAAGAGCAATTATAAAAGCCATGGAGAAACAGTACAATGAGATCTTGACCCCCCTGAAAGACAGCATTCCAAAGAAGCTCGGAATGCAAGTTCAGAAATTAGCAAGAAGGCAATCAACTACTCTTTATAGCATTCCTAATCAG : TTGGGGACTTTCTT</gDNA_template>
            <first_frame> L  Y  N  G  M  D  R  R  Y  A  A  S  L  T  *  A  L  Q  G  R  K   : G  V  M  V  W  S  C  Y  K  L  F  D  F  S  F  C  *  R  N  V  R  K  N  Q  T  N  V  N  *  V  *  S  S  D  Q  P  L  A  S  V  H  H  H  S  G  E   : C  C  C  *  C  R  K  S  N  Y  K  S  H  G  E  T  V  Q  *  D  L  D  P  P  E  R  Q  H  S  K  E  A  R  N  A  S  S  E  I  S  K  K  A  I  N  Y  S  L  *  H  S  *  S   : V  G  D  F  L </first_frame>
            <second_frame>  Y  I  M  V  W  I  E  D  M  Q  L  H  L  L  E  L  C  K  A  E  K  :  V  L  W  S  G  V  V  T  N  Y  S  T  S  P  F  A  E  E  M  F  E  K  T  K  Q  M  L  T  E  Y  E  V  V  I  N  R  W  P  Q  Y  T  I  I  L  E  N  :  A  V  A  N  V  E  R  A  I  I  K  A  M  E  K  Q  Y  N  E  I  L  T  P  L  K  D  S  I  P  K  K  L  G  M  Q  V  Q  K  L  A  R  R  Q  S  T  T  L  Y  S  I  P  N  Q  :  L  G  T  F   </second_frame>
            <third_frame>   I  *  W  Y  G  *  K  I  C  S  F  T  Y  L  S  F  A  R  Q  K  R :   C  Y  G  L  E  L  L  Q  T  I  R  L  L  L  L  L  K  K  C  S  K  K  P  N  K  C  *  L  S  M  K  *  *  S  T  V  G  L  S  T  P  S  F  W  R  M :   L  L  L  M  *  K  E  Q  L  *  K  P  W  R  N  S  T  M  R  S  *  P  P  *  K  T  A  F  Q  R  S  S  E  C  K  F  R  N  *  Q  E  G  N  Q  L  L  F  I  A  F  L  I  S :   W  G  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111416" stop="111478"/>
                    <exon start="111610" stop="111747"/>
                    <exon start="111850" stop="112008"/>
                    <exon start="112111" stop="112122"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIMVWIEDMQLHLLELCKAEKVLWSGVVTNYSTSPFAEEMFEKTKQMLTEYEVVINRWPQYTIILENAVANVERAIIKAMEKQYNEILTPLKDSIPKKLGMQVQKLARRQSTTLYSIPNQLGTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="112929" PGL_stop="113612"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112929" e_stop="113321"/>
            <exon e_start="113597" e_stop="113612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.827" e_score="0.995"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="112929" e_stop="113321" e_length="393"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.827">
            <gDNA_intron_boundary i_start="113322" i_stop="113596" i_length="275"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="113597" e_stop="113612" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112929" stop="113321"/>
              <exon start="113597" stop="113612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113000" stop="113321"/>
              <exon start="113597" stop="113612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAAATGCAAAGATTGCAAGGAAACGCGTTGCAAGAGAAAGATATTGAGCCCCCTCGTTCAATTGTCGAAGCTCGAGCTATACTCTGTAGAGACACTAGCAACTGTCCAGATTCCTCCAACTACTTGTATTTTTAGGAATACAAACACTCCTCCATATGCTCTTGATGTACTGTAATGTTTTTTGTGGCTTACTATTTTTTCATGTCCATATATCTACTATCTATATTCTTTTGTATGTAAAATTTCCAATTCTTTTTGTAAGCAAGATGTCATCAATTAGAATAAAATACTCTTTGCTCATCAGAATTCCAAAGTTATTTCAGATTGTGTCTTGAGTTTTAGTTCTTTTTTTGATGCGTGAATCCATATATAACTAGTGGGATCTTTGTTA : AAATGAGACAAAAAAA</gDNA_template>
            <first_frame> P  K  C  K  D  C  K  E  T  R  C  K  R  K  I  L  S  P  L  V  Q  L  S  K  L  E  L  Y  S  V  E  T  L  A  T  V  Q  I  P  P  T  T  C  I  F  R  N  T  N  T  P  P  Y  A  L  D  V  L  *  C  F  L  W  L  T  I  F  S  C  P  Y  I  Y  Y  L  Y  S  F  V  C  K  I  S  N  S  F  C  K  Q  D  V  I  N  *  N  K  I  L  F  A  H  Q  N  S  K  V  I  S  D  C  V  L  S  F  S  S  F  F  D  A  *  I  H  I  *  L  V  G  S  L  L  :  K  *  D  K  K  </first_frame>
            <second_frame>  P  N  A  K  I  A  R  K  R  V  A  R  E  R  Y  *  A  P  S  F  N  C  R  S  S  S  Y  T  L  *  R  H  *  Q  L  S  R  F  L  Q  L  L  V  F  L  G  I  Q  T  L  L  H  M  L  L  M  Y  C  N  V  F  C  G  L  L  F  F  H  V  H  I  S  T  I  Y  I  L  L  Y  V  K  F  P  I  L  F  V  S  K  M  S  S  I  R  I  K  Y  S  L  L  I  R  I  P  K  L  F  Q  I  V  S  *  V  L  V  L  F  L  M  R  E  S  I  Y  N  *  W  D  L  C  * :   N  E  T  K  K </second_frame>
            <third_frame>   Q  M  Q  R  L  Q  G  N  A  L  Q  E  K  D  I  E  P  P  R  S  I  V  E  A  R  A  I  L  C  R  D  T  S  N  C  P  D  S  S  N  Y  L  Y  F  *  E  Y  K  H  S  S  I  C  S  *  C  T  V  M  F  F  V  A  Y  Y  F  F  M  S  I  Y  L  L  S  I  F  F  C  M  *  N  F  Q  F  F  L  *  A  R  C  H  Q  L  E  *  N  T  L  C  S  S  E  F  Q  S  Y  F  R  L  C  L  E  F  *  F  F  F  *  C  V  N  P  Y  I  T  S  G  I  F  V   : K  M  R  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113029" stop="113265"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLSRFLQLLVFLGIQTLLHMLLMYCNVFCGLLFFHVHISTIYILLYVKFPILFVSKMSSIRIKYSLLIRIPKLFQIVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="114508" PGL_stop="115180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114508" e_stop="115180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="114508" e_stop="115180" e_length="673"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114508" stop="115176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114508" stop="114815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114509" stop="115180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114509" stop="115011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312754" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGTACATCATCTACAGATCTACTTAGCTTTCTTTCTGAGGTCAGTGATTTTGGTTTTGAAAAACTTGTGAGTGTATTATTATTTTTGAAATAGAAAAAAAATGCATGTTTACAGCAAATTCTCTTTTTTTTTTTGAGAACAGATTATTTTTGTTTAACAAGAATGAACTTGGTCCTGTAAGGTTGTGATGAAATTGTGTTTTCTACTTTTTATAATCCTTAATTAATGTTTTATTCTTAGGTATATTGGTCCAAGTCTCTAATTGGTATAGTAGTTTTCTAGATGTTTGGAGGGGTTATCTTTGGTTTTCATGACTATCTAGATAACTAATTTAGTAGTGTTAAAGTTTTTTTTGTAGATATTTTCCTTTGTTTCATGAGGTTTGTTTCTTATTCACGAGTGTGTATCAATATGGCTGAAGCAGAACAAGGCTTGCTTTGAAGCTCGCGTTTCTAGAATGAAGAGTAGATGTTTCCGAAAATTGTACTTTGGGTGTAAAAGTGTAGCTCAATAGATAGTTTGAACCAGTATATGGATTTCGAAGAAGAGTGTTGTAGGCTGCTTTCTGTTCTATTCTGTTATTGTTTCTCTTTTTTGTACCATCTTGGTATCTCTCTTTAAAATACATACCTTTTAAAAAAAAGTGTGTGTATATCTATATGTATATATA</gDNA_template>
            <first_frame> L  S  T  S  S  T  D  L  L  S  F  L  S  E  V  S  D  F  G  F  E  K  L  V  S  V  L  L  F  L  K  *  K  K  N  A  C  L  Q  Q  I  L  F  F  F  L  R  T  D  Y  F  C  L  T  R  M  N  L  V  L  *  G  C  D  E  I  V  F  S  T  F  Y  N  P  *  L  M  F  Y  S  *  V  Y  W  S  K  S  L  I  G  I  V  V  F  *  M  F  G  G  V  I  F  G  F  H  D  Y  L  D  N  *  F  S  S  V  K  V  F  F  V  D  I  F  L  C  F  M  R  F  V  S  Y  S  R  V  C  I  N  M  A  E  A  E  Q  G  L  L  *  S  S  R  F  *  N  E  E  *  M  F  P  K  I  V  L  W  V  *  K  C  S  S  I  D  S  L  N  Q  Y  M  D  F  E  E  E  C  C  R  L  L  S  V  L  F  C  Y  C  F  S  F  L  Y  H  L  G  I  S  L  *  N  T  Y  L  L  K  K  S  V  C  I  S  I  C  I  Y  </first_frame>
            <second_frame>  L  V  H  H  L  Q  I  Y  L  A  F  F  L  R  S  V  I  L  V  L  K  N  L  *  V  Y  Y  Y  F  *  N  R  K  K  M  H  V  Y  S  K  F  S  F  F  F  *  E  Q  I  I  F  V  *  Q  E  *  T  W  S  C  K  V  V  M  K  L  C  F  L  L  F  I  I  L  N  *  C  F  I  L  R  Y  I  G  P  S  L  *  L  V  *  *  F  S  R  C  L  E  G  L  S  L  V  F  M  T  I  *  I  T  N  L  V  V  L  K  F  F  L  *  I  F  S  F  V  S  *  G  L  F  L  I  H  E  C  V  S  I  W  L  K  Q  N  K  A  C  F  E  A  R  V  S  R  M  K  S  R  C  F  R  K  L  Y  F  G  C  K  S  V  A  Q  *  I  V  *  T  S  I  W  I  S  K  K  S  V  V  G  C  F  L  F  Y  S  V  I  V  S  L  F  C  T  I  L  V  S  L  F  K  I  H  T  F  *  K  K  V  C  V  Y  L  Y  V  Y  I </second_frame>
            <third_frame>   *  Y  I  I  Y  R  S  T  *  L  S  F  *  G  Q  *  F  W  F  *  K  T  C  E  C  I  I  I  F  E  I  E  K  K  C  M  F  T  A  N  S  L  F  F  F  E  N  R  L  F  L  F  N  K  N  E  L  G  P  V  R  L  *  *  N  C  V  F  Y  F  L  *  S  L  I  N  V  L  F  L  G  I  L  V  Q  V  S  N  W  Y  S  S  F  L  D  V  W  R  G  Y  L  W  F  S  *  L  S  R  *  L  I  *  *  C  *  S  F  F  C  R  Y  F  P  L  F  H  E  V  C  F  L  F  T  S  V  Y  Q  Y  G  *  S  R  T  R  L  A  L  K  L  A  F  L  E  *  R  V  D  V  S  E  N  C  T  L  G  V  K  V  *  L  N  R  *  F  E  P  V  Y  G  F  R  R  R  V  L  *  A  A  F  C  S  I  L  L  L  F  L  F  F  V  P  S  W  Y  L  S  L  K  Y  I  P  F  K  K  K  C  V  Y  I  Y  M  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0018L21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="+" PGL_start="116932" PGL_stop="117664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116932" e_stop="117664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="116932" e_stop="117664" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116932" stop="117664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116982" stop="117664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGATGTTTTCTTCATGCTGGTAGTGTAAGAGAATCTTTACACTTTTAGTCACCGTTGAGATATACTAATAGCGACTTAGTTTAATGTGTCTGTCTTGAGACTGTGATTCTTTGTGCAGAGAAATCCGTGTACTGAGCTGCTTTCGTAACCAAGAAATGAACTTTGGGAGACTAAAGAATGTGGTAGCTGCTGCAGCCATTGAAGGGTTGGCTGAAGCAAGGGCCAGGATATTTGGTCATGTGCTTAATCCAACCGGGCAGAGATCATCCCACAAGGTTTTACGCAAGAAGCTCATCGGTGAGAAGGTTTCACAATGGTACCCACATGATATCATGAAAGATGATCCTCTTGTGATGGCACGTCAAGAGCAAGAGCGCCTGAGCAAGCTTGAAATGCTTAGACGTCGTGGAAAGGGACCTCCTAAGAAGGGTCAAGGCAAGCAGGCTAAAAAACGTAACAAATAGAGATGATACTTTCACAATCTTGCAAATTGGCTGTTTCTATGGGTTACTCTGCGCGATTTGATCGCCTTCTTGTTTCTGATCTCATAGCATCTTACTTTCAATATAGTTTTTTGTTTTCATGCTTGTTTCTGACTTGTAATACTACTGATACACATTTGTTAGTATCAAGTAAAGTGAATTTAGGGGTTGATTGGTTTGGAAGAACATTTGTGGTTTTATTAGTTCGAATGAATAAATAGCGTATCCAAACTTTATTAACTACGAAA</gDNA_template>
            <first_frame> N  *  C  F  L  H  A  G  S  V  R  E  S  L  H  F  *  S  P  L  R  Y  T  N  S  D  L  V  *  C  V  C  L  E  T  V  I  L  C  A  E  K  S  V  Y  *  A  A  F  V  T  K  K  *  T  L  G  D  *  R  M  W  *  L  L  Q  P  L  K  G  W  L  K  Q  G  P  G  Y  L  V  M  C  L  I  Q  P  G  R  D  H  P  T  R  F  Y  A  R  S  S  S  V  R  R  F  H  N  G  T  H  M  I  S  *  K  M  I  L  L  *  W  H  V  K  S  K  S  A  *  A  S  L  K  C  L  D  V  V  E  R  D  L  L  R  R  V  K  A  S  R  L  K  N  V  T  N  R  D  D  T  F  T  I  L  Q  I  G  C  F  Y  G  L  L  C  A  I  *  S  P  S  C  F  *  S  H  S  I  L  L  S  I  *  F  F  V  F  M  L  V  S  D  L  *  Y  Y  *  Y  T  F  V  S  I  K  *  S  E  F  R  G  *  L  V  W  K  N  I  C  G  F  I  S  S  N  E  *  I  A  Y  P  N  F  I  N  Y  E  </first_frame>
            <second_frame>  I  D  V  F  F  M  L  V  V  *  E  N  L  Y  T  F  S  H  R  *  D  I  L  I  A  T  *  F  N  V  S  V  L  R  L  *  F  F  V  Q  R  N  P  C  T  E  L  L  S  *  P  R  N  E  L  W  E  T  K  E  C  G  S  C  C  S  H  *  R  V  G  *  S  K  G  Q  D  I  W  S  C  A  *  S  N  R  A  E  I  I  P  Q  G  F  T  Q  E  A  H  R  *  E  G  F  T  M  V  P  T  *  Y  H  E  R  *  S  S  C  D  G  T  S  R  A  R  A  P  E  Q  A  *  N  A  *  T  S  W  K  G  T  S  *  E  G  S  R  Q  A  G  *  K  T  *  Q  I  E  M  I  L  S  Q  S  C  K  L  A  V  S  M  G  Y  S  A  R  F  D  R  L  L  V  S  D  L  I  A  S  Y  F  Q  Y  S  F  L  F  S  C  L  F  L  T  C  N  T  T  D  T  H  L  L  V  S  S  K  V  N  L  G  V  D  W  F  G  R  T  F  V  V  L  L  V  R  M  N  K  *  R  I  Q  T  L  L  T  T  K </second_frame>
            <third_frame>   L  M  F  S  S  C  W  *  C  K  R  I  F  T  L  L  V  T  V  E  I  Y  *  *  R  L  S  L  M  C  L  S  *  D  C  D  S  L  C  R  E  I  R  V  L  S  C  F  R  N  Q  E  M  N  F  G  R  L  K  N  V  V  A  A  A  A  I  E  G  L  A  E  A  R  A  R  I  F  G  H  V  L  N  P  T  G  Q  R  S  S  H  K  V  L  R  K  K  L  I  G  E  K  V  S  Q  W  Y  P  H  D  I  M  K  D  D  P  L  V  M  A  R  Q  E  Q  E  R  L  S  K  L  E  M  L  R  R  R  G  K  G  P  P  K  K  G  Q  G  K  Q  A  K  K  R  N  K  *  R  *  Y  F  H  N  L  A  N  W  L  F  L  W  V  T  L  R  D  L  I  A  F  L  F  L  I  S  *  H  L  T  F  N  I  V  F  C  F  H  A  C  F  *  L  V  I  L  L  I  H  I  C  *  Y  Q  V  K  *  I  *  G  L  I  G  L  E  E  H  L  W  F  Y  *  F  E  *  I  N  S  V  S  K  L  Y  *  L  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117033" stop="117398"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DCDSLCREIRVLSCFRNQEMNFGRLKNVVAAAAIEGLAEARARIFGHVLNPTGQRSSHKVLRKKLIGEKVSQWYPHDIMKDDPLVMARQEQERLSKLEMLRRRGKGPPKKGQGKQAKKRNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="+"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117392" stop="117637"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIEMILSQSCKLAVSMGYSARFDRLLVSDLIASYFQYSFLFSCLFLTCNTTDTHLLVSSKVNLGVDWFGRTFVVLLVRMNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="-" PGL_start="120521" PGL_stop="120138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120521" e_stop="120138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="120521" e_stop="120138" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120521" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120521" stop="120151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120520" stop="120139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308423" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTAATAAGAAGAATATAACTATTTCTTCAGATAATTACATAAATTAAAGTCGATACATATAAATATATATGGCAAGATTCTATGGTGTGGGATCAGATGGTGGCACAACACTTGATGATTCGAGCTTAATAATAATAGTGGGAATGGTTATTATGTCTGTTTTAATGGTTTCTATGGTCATTTTTGCTTGTGGAGACTCCTCAAATGGTGAAAAGGACGATGATTGGTACTATCATGGAAGCGGAGGAGACGGTGGAGCAGGCTGCGGTGGTGGTTGCGATTAAATTTTTCTTCTTGAATCTGCTTTTTTTTTTTTTATCAATGTAGATTCCAGTCCAAGTAAAAAATAATTTTTTTTTAAAAAAAAGATCTATAGTAGTG</gDNA_template>
            <first_frame> R  L  I  R  R  I  *  L  F  L  Q  I  I  T  *  I  K  V  D  T  Y  K  Y  I  W  Q  D  S  M  V  W  D  Q  M  V  A  Q  H  L  M  I  R  A  *  *  *  *  W  E  W  L  L  C  L  F  *  W  F  L  W  S  F  L  L  V  E  T  P  Q  M  V  K  R  T  M  I  G  T  I  M  E  A  E  E  T  V  E  Q  A  A  V  V  V  A  I  K  F  F  F  L  N  L  L  F  F  F  L  S  M  *  I  P  V  Q  V  K  N  N  F  F  L  K  K  R  S  I  V  V </first_frame>
            <second_frame>  D  *  *  E  E  Y  N  Y  F  F  R  *  L  H  K  L  K  S  I  H  I  N  I  Y  G  K  I  L  W  C  G  I  R  W  W  H  N  T  *  *  F  E  L  N  N  N  S  G  N  G  Y  Y  V  C  F  N  G  F  Y  G  H  F  C  L  W  R  L  L  K  W  *  K  G  R  *  L  V  L  S  W  K  R  R  R  R  W  S  R  L  R  W  W  L  R  L  N  F  S  S  *  I  C  F  F  F  F  Y  Q  C  R  F  Q  S  K  *  K  I  I  F  F  *  K  K  D  L  *  *   </second_frame>
            <third_frame>   T  N  K  K  N  I  T  I  S  S  D  N  Y  I  N  *  S  R  Y  I  *  I  Y  M  A  R  F  Y  G  V  G  S  D  G  G  T  T  L  D  D  S  S  L  I  I  I  V  G  M  V  I  M  S  V  L  M  V  S  M  V  I  F  A  C  G  D  S  S  N  G  E  K  D  D  D  W  Y  Y  H  G  S  G  G  D  G  G  A  G  C  G  G  G  C  D  *  I  F  L  L  E  S  A  F  F  F  F  I  N  V  D  S  S  P  S  K  K  *  F  F  F  K  K  K  I  Y  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0018L21.1" strand="-"/>
                <serials PGL_serial="29" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120456" stop="120235"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYMARFYGVGSDGGTTLDDSSLIIIVGMVIMSVLMVSMVIFACGDSSNGEKDDDWYYHGSGGDGGAGCGGGCD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 214 chains have been computed
$ 
$ memory statistics:
$ 1437160 bytes spliced alignments in total
$ 139 spliced alignments have been stored
$ 10339 bytes was the average size of a spliced alignment
$ 41824 bytes predicted gene locations in total
$ 29 predicted gene locations have been stored
$ 1442 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 254 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 15:39:20
-->
