<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 20:49:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98" g_stop="735" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98" e_stop="735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTACTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCACAGACATAGGTTTGTTCTATTCCAATGAATCCAAATCAGAACTAATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTTCATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138" g_stop="765" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138" e_stop="765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTACTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCACAGACATAGGTTTGTTCTATTCCAATGAATCCAAATCAGAACTAATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTTCATGTGGAGACACGGCAATATCTTGGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138" g_stop="713" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138" e_stop="713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTACTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCACAGACATAGGTTTGTTCTATTCCAATGAATCCAAATCAGAACTAATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1" stop="1040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="188" g_stop="740" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="188" e_stop="740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTACTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCACAGACATAGGTTTGTTCTATTCCAATGAATCCAAATCAGAACTAATTGGTTACGCAGATGCAGGGTATTTATCAGAT-CCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTTCATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211563" ref_strand="+" ref_description="SGN-E211563 [cLEC-67-I7]">
      <seq>ataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccataatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatgggtgagatagaagtncaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcancgtttgagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="53" stop="1416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="353" g_stop="1116" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E211563" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="353" e_stop="1116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTACTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCACAGACATAGGTTTGTTCTATTCCAATGAATCCAAATCAGAACTAATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTTCATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGTAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAAT-GGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCATTAAGGCATTGCCAACATCAACATTTGAGAAGTTG</genome_strand>
        <mrna_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCATAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGGTGAGATAGAAGTNCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCANCGTTTGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201786" ref_strand="+" ref_description="SGN-E201786 [cLEC-11-H5]">
      <seq>tggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccacccttattgtccgaagataatgctgcatgtatagctcaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="80" stop="1250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="380" g_stop="950" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E201786" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="380" e_stop="950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTACTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCACAGACATAGGTTTGTTCTATTCCAATGAATCCAAATCAGAACTAATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTTCATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGTAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAA</genome_strand>
        <mrna_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCACCCTTATTGTCCGAAGATAATGCTGCATGTATAGCTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200850" ref_strand="+" ref_description="SGN-E200850 [cLEC-5-I1]">
      <seq>tttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgcacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatctttaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="384" stop="1381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="684" g_stop="1082" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E200850" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="684" e_stop="1082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTTCATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGTAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAT</genome_strand>
        <mrna_strand>TTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGCACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTTAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351886" ref_strand="+" ref_description="SGN-E351886 [cTOS-8-D9]">
      <seq>ggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcaacgtttgagaagttgagatacaagattggaatgcgccgtctccaagatatcaagtaaagttttcatcagggggagtgaaatacgcgttgtactcttttccttaactatgggtttgtcccaagttgggttttcctggtaagggttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="570" stop="1549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="870" g_stop="1249" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E351886" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="870" e_stop="1249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCATTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATATAAGATT-GAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGTTTTTAAT</genome_strand>
        <mrna_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCAAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATACGCGTTGTACTCTTTTCCTTAACTATGGGTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGGTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4054" stop="5035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4367" g_stop="4735" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4367" e_stop="4735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGTTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTTTGGGTTGTACTATACAAGTATAATTACAGTTGAATCACATGCCATAGTAAACAAAAGGTTTAGTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5813" stop="7121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6113" g_stop="6821" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6113" e_stop="6821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACAAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATACAATTCAAGCTGAATTGCCTTCACTAGAAAAACGTGAAGTTTTTGAAACGATAATCTGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGAATTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAA-GTTTTTCTCAAAGACTTGGCATTGATTATATGGAGACATATTCTCCAGTGGTACATGCAATCACCTTCAGATATCTCATAAATCTGGTAGTTCATGAAAAACTTGAAATGCTTCTAATGGACATTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCATCTATCTCTGTATGTATTGAAACAATCAGAAAGGATGTGGTACAATCATCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGATCCGATTTGTCCTTGCATTTTCATTAAACGGTCGAGGTCTGAATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGACACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTG-AAAAAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="6486" stop="7629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6778" g_stop="7329" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6778" e_stop="7329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTG-AAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAACATTTTTACATGGATAACTCACATCCATTGAGTACTCTAATGGTGGTAAGATCGCTTGACATTAATACATATCCATTTCGACCTCAAGAGAACGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATAGGTTTGTTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGAT-CCGCATAAAGCTCGATCACAAACAAGCTATTCGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736591" ref_strand="+" ref_description="SGN-E736591 [LC06BE03]">
      <seq>tccctatgatcagtggaacacagaagcataatgctgaatatctactatatctgtctctaatttccttatattctaccgccttcttaaaaaatgaacatctcctcccgggtgggtcccgcacccctgttatccccttctttcatctttaaaattcaaagtatatataatatataaagggcttgtatagtttgatcggaattttaagaaaatggcgtcatcgacggtatcgtcatggatgattgggtcatgcatgtcagttcctggtaaaaaggagcatgaattacatggtttttttgggatttataagtctaaatgcaaatgggctattccaagtaaaacaaccaaaggggttttcataaactccaaatccaatagtgctcttacatttccaatctcttcttctttcttgtctcaacctaaccttaccattactggattttcctcttccaattcctgctttctctttaccggatccgcagctaatcctcctccaacaaaaattatctcttatgctcaaacaggggaggtaatggcaattgcatccgaatcggccatggaagccgcaccaaagaagaaacctccaaccaaggaaaggcgagttgttgtgacagggatgggtgtggccacatcagttggtcatgatccccacacgttttatgaaaacctgcttgaaggtgtcagtggcataagtgaaatagaagcttttgattgttctcagtatccaacaagaattgctggagagatcaagtctttctcaactgatggctggattgtacccaaactttctaaaagaatggacaagttcatgctttacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="12949" stop="15134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13193" g_stop="13636" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="521" r_length="446" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13637" i_stop="14462" i_length="826">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14463" g_stop="14668" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="727" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14669" i_stop="14743" i_length="75">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14744" g_stop="14834" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="818" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E736591" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13193" e_stop="13636"/>
          <exon e_start="14463" e_stop="14668"/>
          <exon e_start="14744" e_stop="14834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCTCCTTCTGAACTGAAC-TCTCCGCCC-TCTGCATTTTTCACCATTGCTATTGTCTTCTTTCATCTTTAGAGTTCAAAGTATATATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAGAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAGGTAAATTCTGGCTTTTATGCTTGATGAGTGCCCTTTTCATTTGTTTCGTTAAAATTAAGGATGGCTGGAACTGGAGATGCATTTGTTATTTTGGAGTCTGTTTATTCTCAAGGTTGCATGGTTGATTTTTATAGCTAGTTAGTGAGTGTTTGCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTTAAACAGACCCAGGTTGGTGAAATTGAATTGGGTTTATTGACTTGTTCATTTTGGCATTGCGTGTCATGTGAAAAGAGTGATGGATCATGCAATTTGTTTGTTGCTTAATATCTACAAACTTGTTTCTTGTTGGATTTTTAGATCATGCATCAACACCTCCCAACTGTGTTTCTTGGTTGTTTCTTTGGGCTATCATTAGTGTCTTTCTCATACTTGAAACCATTTGTTGGTTCTTATCAAAAGTTTGGTTGGGTAATAAAACATAAGTACTTATGATGATCATACAAGGTGGAAGATAAAATATGTGCATAACGTTGTGTGATATTTTCTTTTAGTATTAGAGATGAGAACAGCTTGTTGAAACAAGTTGAAGAGTTGTAGTTTTTGGCTGGACATAAAGGAATTCATTGTCCCCTTCTTTCTTTTTTTTTTTTTTTGTAGAAAATGGTTACTTTGTGTTGACCAAATGTTAGAAAATGATTTTAGATTTTTGGAAAATACTATCATTTTTCTGTATCAAGCTACACGATTGGGTTTTCTCTGGAGTACTGCCACAGAACTACAAAGTTGTGAATTTCTACATCATTTTGTAATACACATAGATTTTGATGTATTTGGCCACTCCTTGTACAGGGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACAGTACGTCTTCTTCTTGAGCCTCTTTTCCCTTCAACTTTAGTTATTTACATGTTGGTAATGAGGTACTTACCGCAGAGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGC</genome_strand>
        <mrna_strand>CCGCCTTCTTAAAAAATGAACATCTCCTCCCGGGTGGGTCCCGCACCCCTGTTATCCCCTTCTTTCATCTTTAAAATTCAAAGTATATATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAGAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACA...........................................................................AGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280827" ref_strand="-" ref_description="SGN-E280827 [cLEL-6-F2](-)">
      <seq>gcacgagctgaactctccgccctcttcatttttcaccattgctattgtctggtttcatctttagagttcaaagtatctataatatataaagggcttgtatagtttgatcggaattttaagaaaatggcgtcatcgacggtatcgtcatggatgattgggtcatgcatgtcagttcctggtaaaaaggagcatgaattacatggtttttttgggatttataagtctaaatgcaaatgggctattccaagtaaaacaaccaaaggggttttcataaactccaaatccaatagtgctcttacatttccaatctcttcttctttcttgtctcaacctaaccttaccattactggattttcctcttccaattcctgctttctctttaccggatccgcagctaatcctcctccaacaaaaattatctcttatgctcaaacagggaggtaatggcaattgcatccgaatcggccatggaagccgcaccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="12905" stop="14812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13201" g_stop="13636" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13637" i_stop="14462" i_length="826">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14463" g_stop="14512" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="485" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E280827" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280827" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13201" e_stop="13636"/>
          <exon e_start="14463" e_stop="14512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAACTGAACTCTCCGCCCTCTGCATTTTTCACCATTGCTATTGTCTTCTTTCATCTTTAGAGTTCAAAGTATATATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAGAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAGGTAAATTCTGGCTTTTATGCTTGATGAGTGCCCTTTTCATTTGTTTCGTTAAAATTAAGGATGGCTGGAACTGGAGATGCATTTGTTATTTTGGAGTCTGTTTATTCTCAAGGTTGCATGGTTGATTTTTATAGCTAGTTAGTGAGTGTTTGCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTTAAACAGACCCAGGTTGGTGAAATTGAATTGGGTTTATTGACTTGTTCATTTTGGCATTGCGTGTCATGTGAAAAGAGTGATGGATCATGCAATTTGTTTGTTGCTTAATATCTACAAACTTGTTTCTTGTTGGATTTTTAGATCATGCATCAACACCTCCCAACTGTGTTTCTTGGTTGTTTCTTTGGGCTATCATTAGTGTCTTTCTCATACTTGAAACCATTTGTTGGTTCTTATCAAAAGTTTGGTTGGGTAATAAAACATAAGTACTTATGATGATCATACAAGGTGGAAGATAAAATATGTGCATAACGTTGTGTGATATTTTCTTTTAGTATTAGAGATGAGAACAGCTTGTTGAAACAAGTTGAAGAGTTGTAGTTTTTGGCTGGACATAAAGGAATTCATTGTCCCCTTCTTTCTTTTTTTTTTTTTTTGTAGAAAATGGTTACTTTGTGTTGACCAAATGTTAGAAAATGATTTTAGATTTTTGGAAAATACTATCATTTTTCTGTATCAAGCTACACGATTGGGTTTTCTCTGGAGTACTGCCACAGAACTACAAAGTTGTGAATTTCTACATCATTTTGTAATACACATAGATTTTGATGTATTTGGCCACTCCTTGTACAGGGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAG</genome_strand>
        <mrna_strand>GCACGAGCTGAACTCTCCGCCCTCTTCATTTTTCACCATTGCTATTGTCTGGTTTCATCTTTAGAGTTCAAAGTATCTATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAGAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACA-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484723" ref_strand="+" ref_description="SGN-E484723 [cSTE-14-D6]">
      <seq>ctcccctgcttcgctctaaagtttttctgaactgaactctccgccctctgcatttttcaccattgctattgtcttctttcatcttttgagttcaaagtttatatatatataaaggggttgtatagtttgatcggaattataagaaaaatggcgtcatcgacggtatcgtcatggatgattgggtcatgcatgtcagttcctggtgaaaaggagcatgagttacatggtttttttgggatttataagtctaaatgcaaatgggctattccaagtaaaacaaccaaaggggttttcataaactccaaatccaataatcctgttacatttccaatctcttcttccttcttatctcaacctaaccgtaccattactggatttttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="12901" stop="13859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13201" g_stop="13559" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="383" r_length="359" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E484723" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13201" e_stop="13559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAACTGAACTCTCCGCCCTCTGCATTTTTCACCATTGCTATTGTCTTCTTTCATCTTTAGAGTTCAAAGTATATATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAG-AAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTC</genome_strand>
        <mrna_strand>TTCTGAACTGAACTCTCCGCCCTCTGCATTTTTCACCATTGCTATTGTCTTCTTTCATCTTTTGAGTTCAAAGTTTATAT-ATATATAAAGGGGTTGTATAGTTTGATCGGAATTATAAGAAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTGAAAAGGAGCATGAGTTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAATCCTGTTACATTTCCAATCTCTTCTTCCTTCTTATCTCAACCTAACCGTACCATTACTGGATTTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310476" ref_strand="+" ref_description="SGN-E310476 [cTOA-9-A5]">
      <seq>tgaactgaactctccgccctctgcatttttcaccattgctattgtcttctttcatctttagagttcaaagtatatataatatataaagggcttgtatagtttgatcggaattttaagaaaatggcgtcatcgacggtatcgtcatggatgattgggtcatgcatgtcagttcctggtaaaaaggagcatgaattacatggtttttttgggatttataagtctaaatgcaaatgggctattccaagtaaaacaaccaaaggggttttcataaactccaaatccaatagtgctcttacatttccaatctcttcttctttcttgtctcaacctaaccttaccattactggattttcctcttccaattcctgctttctctttaccggatccgcagctaatcctcctccaacaaaaattatctcttatgctcaaacaggggaggtaatggcaattgcatccgaatcggccatggaagccgcaccaaagaagaaacctccaaccaaggaaaggcgagttgttgtgacagggatgggtgtggccacatcagttggtcatgatccccacacgttttatgaaaacctgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="12904" stop="14913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13204" g_stop="13636" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13637" i_stop="14462" i_length="826">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14463" g_stop="14613" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="584" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E310476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13204" e_stop="13636"/>
          <exon e_start="14463" e_stop="14613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTGAACTCTCCGCCCTCTGCATTTTTCACCATTGCTATTGTCTTCTTTCATCTTTAGAGTTCAAAGTATATATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAGAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAGGTAAATTCTGGCTTTTATGCTTGATGAGTGCCCTTTTCATTTGTTTCGTTAAAATTAAGGATGGCTGGAACTGGAGATGCATTTGTTATTTTGGAGTCTGTTTATTCTCAAGGTTGCATGGTTGATTTTTATAGCTAGTTAGTGAGTGTTTGCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTTAAACAGACCCAGGTTGGTGAAATTGAATTGGGTTTATTGACTTGTTCATTTTGGCATTGCGTGTCATGTGAAAAGAGTGATGGATCATGCAATTTGTTTGTTGCTTAATATCTACAAACTTGTTTCTTGTTGGATTTTTAGATCATGCATCAACACCTCCCAACTGTGTTTCTTGGTTGTTTCTTTGGGCTATCATTAGTGTCTTTCTCATACTTGAAACCATTTGTTGGTTCTTATCAAAAGTTTGGTTGGGTAATAAAACATAAGTACTTATGATGATCATACAAGGTGGAAGATAAAATATGTGCATAACGTTGTGTGATATTTTCTTTTAGTATTAGAGATGAGAACAGCTTGTTGAAACAAGTTGAAGAGTTGTAGTTTTTGGCTGGACATAAAGGAATTCATTGTCCCCTTCTTTCTTTTTTTTTTTTTTTGTAGAAAATGGTTACTTTGTGTTGACCAAATGTTAGAAAATGATTTTAGATTTTTGGAAAATACTATCATTTTTCTGTATCAAGCTACACGATTGGGTTTTCTCTGGAGTACTGCCACAGAACTACAAAGTTGTGAATTTCTACATCATTTTGTAATACACATAGATTTTGATGTATTTGGCCACTCCTTGTACAGGGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGA</genome_strand>
        <mrna_strand>TGAACTGAACTCTCCGCCCTCTGCATTTTTCACCATTGCTATTGTCTTCTTTCATCTTTAGAGTTCAAAGTATATATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAGAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407297" ref_strand="+" ref_description="SGN-E407297 [PPI-6-L9]">
      <seq>ccgccctctgcatttttcaccattgctattgtctcctttcatcttttgagttcaaagtttatatatatataaaggggttgtatagtttgatcggaattttaagaaaaatggcgtcatcgacggtatcgtcatggatgattgggtcatgcatgtcagttcctggtgaaaaggagcatgaattacatggtttttttgggatttataagtctaaatgcaaatgggctattccaagtaaaacaaccaaaggggttttcataaactccaaatccaataatcctgttacatttccaatctcttcttccttcttatctcaacctaaccgtaccattactggattttcctcttccaattcctgctttctatttaccggatccgcagctactcgtcccccaacaaaaagtatctcttctgctcaaacaggggaggtaatggcaattgcttcccaatcggccatggaggctgcaccaaagaagaaacctccaaccaaggaaaggcgagttgttgtgacagggatgggtgtgaccacaccagttggtcatgatccccacacgttttatgaaaacctgcttgaaggtgtcagtggcataagtgaaatagaagcttttgattgttctcagtatccaacaagaattgctggagagatcaagtctttctcaactgatggctggattgtacccaaactttctaaaagaatggacaagttcatgctttacatgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="12917" stop="15137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13217" g_stop="13636" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13637" i_stop="14462" i_length="826">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14463" g_stop="14668" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="626" r_length="206" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14669" i_stop="14743" i_length="75">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14744" g_stop="14837" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="720" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E407297" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13217" e_stop="13636"/>
          <exon e_start="14463" e_stop="14668"/>
          <exon e_start="14744" e_stop="14837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCCTCTGCATTTTTCACCATTGCTATTGTCTTCTTTCATCTTTAGAGTTCAAAGTATATATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAG-AAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAGGTAAATTCTGGCTTTTATGCTTGATGAGTGCCCTTTTCATTTGTTTCGTTAAAATTAAGGATGGCTGGAACTGGAGATGCATTTGTTATTTTGGAGTCTGTTTATTCTCAAGGTTGCATGGTTGATTTTTATAGCTAGTTAGTGAGTGTTTGCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTTAAACAGACCCAGGTTGGTGAAATTGAATTGGGTTTATTGACTTGTTCATTTTGGCATTGCGTGTCATGTGAAAAGAGTGATGGATCATGCAATTTGTTTGTTGCTTAATATCTACAAACTTGTTTCTTGTTGGATTTTTAGATCATGCATCAACACCTCCCAACTGTGTTTCTTGGTTGTTTCTTTGGGCTATCATTAGTGTCTTTCTCATACTTGAAACCATTTGTTGGTTCTTATCAAAAGTTTGGTTGGGTAATAAAACATAAGTACTTATGATGATCATACAAGGTGGAAGATAAAATATGTGCATAACGTTGTGTGATATTTTCTTTTAGTATTAGAGATGAGAACAGCTTGTTGAAACAAGTTGAAGAGTTGTAGTTTTTGGCTGGACATAAAGGAATTCATTGTCCCCTTCTTTCTTTTTTTTTTTTTTTGTAGAAAATGGTTACTTTGTGTTGACCAAATGTTAGAAAATGATTTTAGATTTTTGGAAAATACTATCATTTTTCTGTATCAAGCTACACGATTGGGTTTTCTCTGGAGTACTGCCACAGAACTACAAAGTTGTGAATTTCTACATCATTTTGTAATACACATAGATTTTGATGTATTTGGCCACTCCTTGTACAGGGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACAGTACGTCTTCTTCTTGAGCCTCTTTTCCCTTCAACTTTAGTTATTTACATGTTGGTAATGAGGTACTTACCGCAGAGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCTAA</genome_strand>
        <mrna_strand>CCGCCCTCTGCATTTTTCACCATTGCTATTGTCTCCTTTCATCTTTTGAGTTCAAAGTTTATAT-ATATATAAAGGGGTTGTATAGTTTGATCGGAATTTTAAGAAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTGAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAATCCTGTTACATTTCCAATCTCTTCTTCCTTCTTATCTCAACCTAACCGTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTATTTACCGGATCCGCAGCTACTCGTCCCCCAACAAAAAGTATCTCTTCTGCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGTAATGGCAATTGCTTCCCAATCGGCCATGGAGGCTGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGACCACACCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACA...........................................................................AGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458248" ref_strand="+" ref_description="SGN-E458248 [cPRO-5-K3]">
      <seq>catcttttgagttcaaagtttatatatatataaaggggttgtatagtttgatcggaattataagaaaaatggcgtcatcgacggtatcgtcatggatgattgggtcatgcatgtcagttcctggtgaaaaggagcatgagttacatggtttttttgggatttataagtctaaatgcaaatgggctattccaagtaaaacaaccaaagggggtttcataaactcccaatccaataatcctggtacatttccaatctcttcttccttcttatctcaacctaaccggaccattactggattttcctcttccaattcctgctttctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="12956" stop="13880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13256" g_stop="13580" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E458248" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13256" e_stop="13580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTTAGAGTTCAAAGTATATATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAG-AAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTT</genome_strand>
        <mrna_strand>CATCTTTTGAGTTCAAAGTTTATAT-ATATATAAAGGGGTTGTATAGTTTGATCGGAATTATAAGAAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTGAAAAGGAGCATGAGTTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGGTTTCATAAACTCCCAATCCAATAATCCTGGTACATTTCCAATCTCTTCTTCCTTCTTATCTCAACCTAACCGGACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269969" ref_strand="+" ref_description="SGN-E269969 [cLEM-7-H21]">
      <seq>tcatggatgattgggtcatgcatgtcagttgctggtaaaaaggagcatgaattacatggtttttttgggatttataagtctaaatgcaaatgggctattccaagtaaaacaaccaaaggggttttcataaactccaaatccaatagtgctcttacatttccaatctcttcttctttcttgtctcaacctaaccttaccattactggattttcctcttccaattcctgctttctctttaccggatccgcagctaatcctcctccaacaaaaattatctcttatgctcaaacaggggaggtaatggcaattgcatccgaatcggccatggaagccgcaccaaagaagaaacctccaaccaaggaaaggcgagttgttgtgacagggatgggtgtggccacatcagttggtcatgatccccacacgttttatgaaaacctgcttgaaggtgtcagtggcataagtgaaatagaagcttttgattgttctcagtatccaacaagaattgctggagagatcaagtctttctcaactgatggctggattgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="13045" stop="15091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13345" g_stop="13636" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13637" i_stop="14462" i_length="826">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14463" g_stop="14668" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="498" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14669" i_stop="14743" i_length="75">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14744" g_stop="14791" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="546" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E269969" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13345" e_stop="13636"/>
          <exon e_start="14463" e_stop="14668"/>
          <exon e_start="14744" e_stop="14791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAGGTAAATTCTGGCTTTTATGCTTGATGAGTGCCCTTTTCATTTGTTTCGTTAAAATTAAGGATGGCTGGAACTGGAGATGCATTTGTTATTTTGGAGTCTGTTTATTCTCAAGGTTGCATGGTTGATTTTTATAGCTAGTTAGTGAGTGTTTGCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTTAAACAGACCCAGGTTGGTGAAATTGAATTGGGTTTATTGACTTGTTCATTTTGGCATTGCGTGTCATGTGAAAAGAGTGATGGATCATGCAATTTGTTTGTTGCTTAATATCTACAAACTTGTTTCTTGTTGGATTTTTAGATCATGCATCAACACCTCCCAACTGTGTTTCTTGGTTGTTTCTTTGGGCTATCATTAGTGTCTTTCTCATACTTGAAACCATTTGTTGGTTCTTATCAAAAGTTTGGTTGGGTAATAAAACATAAGTACTTATGATGATCATACAAGGTGGAAGATAAAATATGTGCATAACGTTGTGTGATATTTTCTTTTAGTATTAGAGATGAGAACAGCTTGTTGAAACAAGTTGAAGAGTTGTAGTTTTTGGCTGGACATAAAGGAATTCATTGTCCCCTTCTTTCTTTTTTTTTTTTTTTGTAGAAAATGGTTACTTTGTGTTGACCAAATGTTAGAAAATGATTTTAGATTTTTGGAAAATACTATCATTTTTCTGTATCAAGCTACACGATTGGGTTTTCTCTGGAGTACTGCCACAGAACTACAAAGTTGTGAATTTCTACATCATTTTGTAATACACATAGATTTTGATGTATTTGGCCACTCCTTGTACAGGGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACAGTACGTCTTCTTCTTGAGCCTCTTTTCCCTTCAACTTTAGTTATTTACATGTTGGTAATGAGGTACTTACCGCAGAGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTA</genome_strand>
        <mrna_strand>TCATGGATGATTGGGTCATGCATGTCAGTTGCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACA...........................................................................AGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418577" ref_strand="+" ref_description="SGN-E418577 [STM-27-H18]">
      <seq>ataaactccaaatccaataatcctcttacatttccaatctcttcttccttcttatctcaacctaaccgtaccattactggattttcctcttccaattcctgttttctatttaccggatccgcagttactcgtcccccaacaaaaagtatctcttctgctcaaacaggggaggtaatggcaattgcttcccaatcggccatggaggctgcaccaaagaagaaacctccaaccaaagaaaggcgagttgttgtgacagggatgggtgtgaccacaccagttggtcatgatccccacacgttttatgaaaacctgcttgaaggtgtcagtggcataagtgaaatagaagcttttgattgttctcagtatccaacaagaattgctggagagatcaagtctttctcaactgatggctggattgtacccaaactttctaaaagaatggacaagttcatgctttacatgctaacggctggtaagaaagcactctcagatggtggaattactgaagacatgatgaatgaattggataaaagaagatgtggagttttaattggctctgctatgggtgggatgaaggtttttaatgatgcaatagaggctctaagggtttcctataggaagatgaatcctttntgtgtcccatttgcaactacaaacatgggttctgccatgcttgccatggacctgggatggatgggtccaaattattcaatttcaacagcatgtgcaacaagcaacttctgcatattgaatgccgctaaccacatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="13171" stop="15803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13471" g_stop="13636" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13637" i_stop="14462" i_length="826">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14463" g_stop="14668" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="372" r_length="206" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14669" i_stop="14743" i_length="75">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14744" g_stop="14947" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="576" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14948" i_stop="15216" i_length="269">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15217" g_stop="15327" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="687" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15328" i_stop="15419" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15420" g_stop="15503" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="771" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E418577" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13471" e_stop="13636"/>
          <exon e_start="14463" e_stop="14668"/>
          <exon e_start="14744" e_stop="14947"/>
          <exon e_start="15217" e_stop="15327"/>
          <exon e_start="15420" e_stop="15503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAGGTAAATTCTGGCTTTTATGCTTGATGAGTGCCCTTTTCATTTGTTTCGTTAAAATTAAGGATGGCTGGAACTGGAGATGCATTTGTTATTTTGGAGTCTGTTTATTCTCAAGGTTGCATGGTTGATTTTTATAGCTAGTTAGTGAGTGTTTGCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTTAAACAGACCCAGGTTGGTGAAATTGAATTGGGTTTATTGACTTGTTCATTTTGGCATTGCGTGTCATGTGAAAAGAGTGATGGATCATGCAATTTGTTTGTTGCTTAATATCTACAAACTTGTTTCTTGTTGGATTTTTAGATCATGCATCAACACCTCCCAACTGTGTTTCTTGGTTGTTTCTTTGGGCTATCATTAGTGTCTTTCTCATACTTGAAACCATTTGTTGGTTCTTATCAAAAGTTTGGTTGGGTAATAAAACATAAGTACTTATGATGATCATACAAGGTGGAAGATAAAATATGTGCATAACGTTGTGTGATATTTTCTTTTAGTATTAGAGATGAGAACAGCTTGTTGAAACAAGTTGAAGAGTTGTAGTTTTTGGCTGGACATAAAGGAATTCATTGTCCCCTTCTTTCTTTTTTTTTTTTTTTGTAGAAAATGGTTACTTTGTGTTGACCAAATGTTAGAAAATGATTTTAGATTTTTGGAAAATACTATCATTTTTCTGTATCAAGCTACACGATTGGGTTTTCTCTGGAGTACTGCCACAGAACTACAAAGTTGTGAATTTCTACATCATTTTGTAATACACATAGATTTTGATGTATTTGGCCACTCCTTGTACAGGGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACAGTACGTCTTCTTCTTGAGCCTCTTTTCCCTTCAACTTTAGTTATTTACATGTTGGTAATGAGGTACTTACCGCAGAGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCTAACGGCTGGTAAGAAAGCACTCTCAGATGGTGGAATTACTGAAGACATGATGGATGAATTGGATAAAAGAAGATGTGGAGTTTTAATTGGCTCTGCTATGGGTGGGATGAAGGTGATCCACTTTCTTTTTCTTTAATCACAAATCTGATGAAAATTTCGCTGGTCAAATATGCCAACTTTCTTATTCCATTTTACTTTGTTATTTATGTCCTGGGATCAGCTCTCTTTGGTCTCCAACACCTCAAATATAATTGAGCAACAGCTTGTACATGATTGCCCAGCACTGAAATCTCCTCAGAGAGAATCCCTATGCAGACCAGTAGTCTTTGCTAGAACCAAGCTAAGTGACTACTCACTAACTGATTTGCTTTTCTTGAGCAGGTTTTCAATGATGCAATAGAGGCTCTAAGGGTTTCCTATAGGAAGATGAATCCTTTTTGTGTCCCATTTGCAACTACAAACATGGGTTCTGCCATGCTTGCCATGGACCTGGTTAGCCAAAGTTTTAAATTTTCAGTTATTACCTGTGATGTATGAATAAGTAACGCCCAGCTTTGTGTGCCTTCTTACAAATTCAATCGTAGGGATGGATGGGTCCAAATTATTCAATTTCAACAGCATGTGCAACAAGCAACTTCTGCATATTGAATGCCGCTAACCACATCATT</genome_strand>
        <mrna_strand>ATAAACTCCAAATCCAATAATCCTCTTACATTTCCAATCTCTTCTTCCTTCTTATCTCAACCTAACCGTACCATTACTGGATTTTCCTCTTCCAATTCCTGTTTTCTATTTACCGGATCCGCAGTTACTCGTCCCCCAACAAAAAGTATCTCTTCTGCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGTAATGGCAATTGCTTCCCAATCGGCCATGGAGGCTGCACCAAAGAAGAAACCTCCAACCAAAGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGACCACACCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACA...........................................................................AGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCTAACGGCTGGTAAGAAAGCACTCTCAGATGGTGGAATTACTGAAGACATGATGAATGAATTGGATAAAAGAAGATGTGGAGTTTTAATTGGCTCTGCTATGGGTGGGATGAAG.............................................................................................................................................................................................................................................................................GTTTTTAATGATGCAATAGAGGCTCTAAGGGTTTCCTATAGGAAGATGAATCCTTTNTGTGTCCCATTTGCAACTACAAACATGGGTTCTGCCATGCTTGCCATGGACCTG............................................................................................GGATGGATGGGTCCAAATTATTCAATTTCAACAGCATGTGCAACAAGCAACTTCTGCATATTGAATGCCGCTAACCACATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442321" ref_strand="+" ref_description="SGN-E442321 [cSTA-33-A17]">
      <seq>ataaactccaaatccaataatcctcttacatttccaatctcttcttccttcttatctcaacctaaccgtaccattactggattttcctcttccaattcctgttttctatttaccggatccgcagttactcgtcccccaacaaaaagtatctcttctgctcaaacaggggaggtaatggcaattgcttcccaatcggccatggaggctgcaccaaagaagaaacctccaaccaaagaaaggcgagttgttgtgacagggatgggtgtgaccacaccagttggtcatgatccccacacgttttatgaaaacctgcttgaaggtgtcagtggcataagtgaaatagaagcttttgattgttctcagtatccaacaagaattgctggagagatcaagtctttctcaactgatggctggattgtacccaaactttctaaaagaatggacaagttcatgctttacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="13171" stop="15135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13471" g_stop="13636" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13637" i_stop="14462" i_length="826">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14463" g_stop="14668" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="372" r_length="206" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14669" i_stop="14743" i_length="75">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14744" g_stop="14835" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="464" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E442321" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13471" e_stop="13636"/>
          <exon e_start="14463" e_stop="14668"/>
          <exon e_start="14744" e_stop="14835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAGGTAAATTCTGGCTTTTATGCTTGATGAGTGCCCTTTTCATTTGTTTCGTTAAAATTAAGGATGGCTGGAACTGGAGATGCATTTGTTATTTTGGAGTCTGTTTATTCTCAAGGTTGCATGGTTGATTTTTATAGCTAGTTAGTGAGTGTTTGCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTTAAACAGACCCAGGTTGGTGAAATTGAATTGGGTTTATTGACTTGTTCATTTTGGCATTGCGTGTCATGTGAAAAGAGTGATGGATCATGCAATTTGTTTGTTGCTTAATATCTACAAACTTGTTTCTTGTTGGATTTTTAGATCATGCATCAACACCTCCCAACTGTGTTTCTTGGTTGTTTCTTTGGGCTATCATTAGTGTCTTTCTCATACTTGAAACCATTTGTTGGTTCTTATCAAAAGTTTGGTTGGGTAATAAAACATAAGTACTTATGATGATCATACAAGGTGGAAGATAAAATATGTGCATAACGTTGTGTGATATTTTCTTTTAGTATTAGAGATGAGAACAGCTTGTTGAAACAAGTTGAAGAGTTGTAGTTTTTGGCTGGACATAAAGGAATTCATTGTCCCCTTCTTTCTTTTTTTTTTTTTTTGTAGAAAATGGTTACTTTGTGTTGACCAAATGTTAGAAAATGATTTTAGATTTTTGGAAAATACTATCATTTTTCTGTATCAAGCTACACGATTGGGTTTTCTCTGGAGTACTGCCACAGAACTACAAAGTTGTGAATTTCTACATCATTTTGTAATACACATAGATTTTGATGTATTTGGCCACTCCTTGTACAGGGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACAGTACGTCTTCTTCTTGAGCCTCTTTTCCCTTCAACTTTAGTTATTTACATGTTGGTAATGAGGTACTTACCGCAGAGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCT</genome_strand>
        <mrna_strand>ATAAACTCCAAATCCAATAATCCTCTTACATTTCCAATCTCTTCTTCCTTCTTATCTCAACCTAACCGTACCATTACTGGATTTTCCTCTTCCAATTCCTGTTTTCTATTTACCGGATCCGCAGTTACTCGTCCCCCAACAAAAAGTATCTCTTCTGCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGTAATGGCAATTGCTTCCCAATCGGCCATGGAGGCTGCACCAAAGAAGAAACCTCCAACCAAAGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGACCACACCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACA...........................................................................AGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263152" ref_strand="+" ref_description="SGN-E263152 [cLEG-62-O9]">
      <seq>aattgcatccgaatcggccatggaagccgcaccaaagaagaaacctccaaccaaggaaaggcgagttgttgtgacagggatgggtgtggccacatcagttggtcatgatccccacacgttttatgaaaacctgcttgaaggtgtcagtggcataagtgaaatagaagcttttgattgttctcagtatccaacaagaattgctggagagatcaagtctttctcaactgatggctggattgtacccaaactttctaaaagaatggacaagttcatgctttacatgctaacggctggtaagaaagcactctcagatggtggaattactgaagacatgatggatgaattggataaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="14176" stop="15205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14476" g_stop="14668" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14669" i_stop="14743" i_length="75">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14744" g_stop="14905" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="355" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E263152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14476" e_stop="14668"/>
          <exon e_start="14744" e_stop="14905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACAGTACGTCTTCTTCTTGAGCCTCTTTTCCCTTCAACTTTAGTTATTTACATGTTGGTAATGAGGTACTTACCGCAGAGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCTAACGGCTGGTAAGAAAGCACTCTCAGATGGTGGAATTACTGAAGACATGATGGATGAATTGGATAAAAGA</genome_strand>
        <mrna_strand>AATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACA...........................................................................AGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCTAACGGCTGGTAAGAAAGCACTCTCAGATGGTGGAATTACTGAAGACATGATGGATGAATTGGATAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279566" ref_strand="+" ref_description="SGN-E279566 [cLER-5-B24]">
      <seq>gccacatcagttggtcatgatccccacacgttttatgaaaacctgcttgaaggtgtcagtggcataagtgaaatagaagcttttgattgttctcagtatccaacaagaattgctggagagatcaagtctttctcaactgatggctggattgtacccaaactttctaaaagaatggacaagttcatgctttacatgctaacggctggtaagaaagcactctcagatggtggaattactgaagacatgatggatgaattggataaaagaagatgtggagttttaattggctctgctctgggtgggatgaaggttttcaatgatgcaatagaggctctaagggtttcctataggaagatgaatcctttctgtgttccatttgcaactacaaacatgggttctgccatgcttgccatggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="14264" stop="15625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14564" g_stop="14668" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14669" i_stop="14743" i_length="75">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14744" g_stop="14947" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="309" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14948" i_stop="15216" i_length="269">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15217" g_stop="15325" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="418" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E279566" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14564" e_stop="14668"/>
          <exon e_start="14744" e_stop="14947"/>
          <exon e_start="15217" e_stop="15325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACAGTACGTCTTCTTCTTGAGCCTCTTTTCCCTTCAACTTTAGTTATTTACATGTTGGTAATGAGGTACTTACCGCAGAGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCTAACGGCTGGTAAGAAAGCACTCTCAGATGGTGGAATTACTGAAGACATGATGGATGAATTGGATAAAAGAAGATGTGGAGTTTTAATTGGCTCTGCTATGGGTGGGATGAAGGTGATCCACTTTCTTTTTCTTTAATCACAAATCTGATGAAAATTTCGCTGGTCAAATATGCCAACTTTCTTATTCCATTTTACTTTGTTATTTATGTCCTGGGATCAGCTCTCTTTGGTCTCCAACACCTCAAATATAATTGAGCAACAGCTTGTACATGATTGCCCAGCACTGAAATCTCCTCAGAGAGAATCCCTATGCAGACCAGTAGTCTTTGCTAGAACCAAGCTAAGTGACTACTCACTAACTGATTTGCTTTTCTTGAGCAGGTTTTCAATGATGCAATAGAGGCTCTAAGGGTTTCCTATAGGAAGATGAATCCTTTTTGTGTCCCATTTGCAACTACAAACATGGGTTCTGCCATGCTTGCCATGGACC</genome_strand>
        <mrna_strand>GCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACA...........................................................................AGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCTAACGGCTGGTAAGAAAGCACTCTCAGATGGTGGAATTACTGAAGACATGATGGATGAATTGGATAAAAGAAGATGTGGAGTTTTAATTGGCTCTGCTCTGGGTGGGATGAAG.............................................................................................................................................................................................................................................................................GTTTTCAATGATGCAATAGAGGCTCTAAGGGTTTCCTATAGGAAGATGAATCCTTTCTGTGTTCCATTTGCAACTACAAACATGGGTTCTGCCATGCTTGCCATGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346254" ref_strand="+" ref_description="SGN-E346254 [cTOF-23-M14]">
      <seq>gtttcctataggaagatgaatcctttttgtgtcccatttgcaactacaaacatgggttctgccatgcttgccatggacctgggatggatgggtccaaattattcaatttcaacagcatgtgcaacaagcaacttctgcatattgaatgccgctaaccacatcattagaggtgaagctgacatgatgctgtgtggtggatcagatgcagcaattataccaattggattgggaggatttgttgcttgcagagcactttcacagagaaataccgacccttcaagagcttctcggccttgggatagtaatcgcgatggatttgtcatgggtgaaggagctggtgtcctgcttctggaagaacttgagcatgccaagcaaagaggtgcaacaatctatgctgaatttctaggtggaagttttacttgtgatgcttatcacatgactgagcctcatcctaaaggaactggagtcatcctatgtgtagagaaggcattagctcagtcaggggtatccaaggaagatgtgaactacattaatgcgcatgcaacatccacaccagcaggagatcttaaggagtatcaagctcttgttcattgttttggccaaaatccagagttgcgagttaactccacaaaatctatggttggtcacctgcttggagctgctggtgctgntgaggctgtggcaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="14947" stop="19770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15247" g_stop="15327" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15328" i_stop="15419" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15420" g_stop="15515" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="177" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15516" i_stop="15673" i_length="158">
            <donor d_prob="0.407" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15674" g_stop="15719" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="223" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15720" i_stop="15825" i_length="106">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15826" g_stop="15905" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="303" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15906" i_stop="16527" i_length="622">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16528" g_stop="16596" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="372" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16597" i_stop="16733" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16734" g_stop="16818" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="457" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16819" i_stop="19142" i_length="2324">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19143" g_stop="19297" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="612" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19298" i_stop="19394" i_length="97">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19395" g_stop="19470" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="688" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E346254" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15247" e_stop="15327"/>
          <exon e_start="15420" e_stop="15515"/>
          <exon e_start="15674" e_stop="15719"/>
          <exon e_start="15826" e_stop="15905"/>
          <exon e_start="16528" e_stop="16596"/>
          <exon e_start="16734" e_stop="16818"/>
          <exon e_start="19143" e_stop="19297"/>
          <exon e_start="19395" e_stop="19470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCTATAGGAAGATGAATCCTTTTTGTGTCCCATTTGCAACTACAAACATGGGTTCTGCCATGCTTGCCATGGACCTGGTTAGCCAAAGTTTTAAATTTTCAGTTATTACCTGTGATGTATGAATAAGTAACGCCCAGCTTTGTGTGCCTTCTTACAAATTCAATCGTAGGGATGGATGGGTCCAAATTATTCAATTTCAACAGCATGTGCAACAAGCAACTTCTGCATATTGAATGCCGCTAACCACATCATTAGAGGTGAAGCTGTAAGTTTCAAGCCTTTAAGTCATAGAAAGCTGTAGGAAGCAGAGGATTCAGTTTCGTCTTACCGTTGTTCACGGAGTTCCTTATACATAGACAGATGACTCCAAGACTTAACATTCTTAGTAGCTTAGTTCTCTCTTTTTACACAATGACAATGCAGGACATGATGCTGTGTGGTGGATCAGATGCAGCAATTATACCAATTGGTATGTACCTGTTCTCTTTTACCAGAAGTTTAGCCTATCAAGCTGAGGTTGTAAAACTATTGTTTTATATAACTTTATCTTATTTCGTTTTTTGTTACTTATGCAGGATTGGGAGGATTTGTTGCTTGCAGAGCACTTTCACAGAGAAATACCGACCCTTCAAGAGCTTCTCGGCCTTGGGATAGTGTAATGTCTTGTAATCTTTTGCTCTTGTTCCTCTGCTTTCTGTCTAGTTGTTAGCACAAAATTTTGTGGAATGGAGTGGTGATTCTAGTGTACTCGAGATATTCCTGTTGCAGTTCTTCAGTATGGGACAAGTAGGAAATTAGAAATATTCGACTTTGAATTTTTCTCCTGTTTACTGAGTGAGTTATGCATATCTCAATTTGCAATGTCCATTCCATGAGATTGAACTTGTGTGGCATATTTTCTTCAGAATTTATAATTATGTAGCTCCATTGGCACTCATGTGGACTTTGTGGAAGAGAGACATATAAGATATTTTGTAGGAACTGAAAACTCCTGTTTTATATTGGTGGAATATTCATATTTTGAGTGTACTTTTGGAGCAAATATGATATTCCAATCACCATGGACGATAGGATGCACTTTACAGAGAATCATGACCTTTTATGGGATTCTCAACTTTTTGCATACATCTTATGTGCCTGTGTTAATTGCTATTCAATGACTTGTTAGATGAAGCAAAAGCACTACAAAATTTAAAACCAATCCTTTTTCTGGTTGTGCGTGTGTAGCATATTTAGTAAGATTGCTTCCTTCTTATTTTTATTTTAATCCTGGATAGAATCGCGATGGATTTGTCATGGGTGAAGGAGCTGGTGTCCTGCTTCTGGAAGAACTTGAGCATGCCAAGGTGATATATGCTTCAAAATCAATAAATGCTTTCTTGCTCACCCGCTTGTTGATCCTCAAACAGATAATATGAAAGATAAAAAGCCAATTCTGGGTCATATAATTGTTTTAAGTTTTCTTTTTATATTTCATGAGCAGCAAAGAGGTGCAACAATCTATGCTGAATTTCTAGGTGGAAGTTTTACTTGTGATGCTTATCACATGACTGAGCCTCATCCTAAAGGTAATTTCTCTCATATATATATTCTTGATTTTATCCTTTGGGGTGGCCTAGTGGTTTGGGCTTGGACTTCCATGTTAGAGGTTTCAAGTTCGAAACCCATTGTCTATAAAAGCAAGGGGTTTGCCTTGGTTGAGCTCGTCGCACCGGGCTTGCCTGATTTGCGAGCTATTGCATAGGAGTGGGGGGTTTGCCTTGGGCGCACCCAAAGGGTAGCGACTGTGGGTTGCTCTTGTCATAAAAAATATATATTCTTAATTTGCGTAGATGTGTCCATTTTGAATGGGCGTGACATAGATATTCTTCTTGTGGACCTTTAAACTCAGTAAAACTTAGCAAAAATTGCATTTACTCATACCAGAGAGTTATACGGTTATGCACATCCTTATCGTATCCATATGGGTGCAGAAATCTATATCATCCAAAAACTGTATAGTTCTCTTGTGAAGCCACTCAGTTGTTGGGGTTCTTTTTCATTGGTTAATAAGATAGAGTTAATTAGATAGAGTTAGTAAGATTTCTCAAGAAACGAAGATCAATGTAGCTTGAGTCTAAGAAACCAAATGGGTAGGAACCAAGACTAGGGATGTAGACGGGTTTAAGTTGTGGTAATCAGAAAGCTTGGGGCACAGATATTTTAGTAGTCAAGGAACTCAGGGAGCAAGTGGTAGAGGTTAGGAGGATGAATGACATGATGATGGCCATTAAACTAGCTTTGTGAGGGCTCACTTTTAACATTATTTGTGCATATGCGATTTTTGTGGGTTTGGACGAGGAGATCAAAAAGCACTTCTAAAAGGAGTAGGATGAGGTTATCAGAGGTATTCGACCGACTGTGGAACTATTGTTAGGAGGAGACTTTAATGGTTACATATGGACCACTTCAACAGGATATGATGATGTTCATGGAGGTTTCAATTTTGGGGATAGAAATGAAGGAGTTTCCCTTTTAGATTGCGCAAAAGCTTTCGAGATGGTCATAGCTAACTCGAGATTCCAATAGAGGGAAGAGCACCTGGTGACCTATGCTAGTACGGTGGTTAAGACTCGGATAGATTGCGTGCTCCTTTGGAAGTGTGATAGAGGTTTATGCAAGACTGCGAGGTTATTATTGGTGAAAATTTTTCGTACTATATGCGGCTAGCCTCCTCCTTGCCTCTTCTCATGATTAGTAGTATTGTTAAGTAATTATGTAGTTTCTTATTCTTCTATGTGTATTACTATTTGTTGCTTCATTTACTTTGTATATTTGTATTTGCTTGTCATTTTTCATGGAATCCTGCTTTGATGACATCCCTTTTGAGCGAGGGTTTATGAGAAACGACCACTTTAATCCACAAAGGTAGGGGGTAAGGTCGGCGTCCATCTTCCCCTCTCTATACCCCACTCCAATAAAATTGGAACGATACAAATGTATGTTTGTCGAGCAACATCAAATGTAAGATTTACTTTTTGCATGATGAAACAGAAGCATTTTTAGGTTTAATTTACCCCTCCAACTACTAGCTGTGACATAGAGGCCTCCAAAATATGATTCCATCACTCTAACATCTTATAATCTGGAGGGGTCTAAATTTTGAGGGGAAAGTTATATGGCTAAACGGTTAGAGTAATACATCTCCTAAACCTCTTCTGTTTTCATGTTTTCTTTCTATGGCCTTAAATATCTGGTGCGTTGCTCCTTCTAACAAATATAGCAGCAGATATTCTTGAATCTGTCTATCCATCCATCTCATAAAAGGTAATGCCTCTAACCATATATAGGATTTGATCCTTTGATTATACGTTGGCTTCGTTTGAAAAAAAATATGTTTCTTTTCTTACCTAATGACTTATAACTTGCATGTTTTTCTTTAATCACCAAGATTTTGTTCCACAAGGTATTAACTCCTTTATTGACATCTTATAATAATTACATTTTATGGGATGCACGAGTCACACAAAACTCCTGATGGGTTCCTGTGTGGCCCACCTATCTTGTCATGCTTGACTTTATTCTTTTTCTCATGTCAACTGCAGATCTCGAAATAAACTGCTACTTCCTGGTTGTAGTGACTTCAATTGTATACTATTTCTTAGCTTCTTTTTCTGTTTTGCCTAAGTTGGAGATACAGTTGTACGAATCACGCCTAGTTCCTCAAGTTCTAGTATTTTTTGATAATTGTAGTTGAGAGATTCTTCCAAACCAGCTAGATATAGTTGCACAATTTGTAGCTTACTCAGAACAGAATTTAGTATAACATAATAAGAATGCACAATCTCATGTTTACTGAGATATACAATTAAGAAAGGAAACCTTTGAACTCTTCTATTCCCTAAACTAGCAGGAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTTAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAAAATCCAGAGGTTAGATTGAATTTCTCTCATTTAACTACTGTGTTCATGCCAATCCTCTCAGGTTTTTGGTTCAGCTGTTTAATCAGCCACTGCTCTATGTTTTCAGTTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAGGCTGTGGCAACTA</genome_strand>
        <mrna_strand>GTTTCCTATAGGAAGATGAATCCTTTTTGTGTCCCATTTGCAACTACAAACATGGGTTCTGCCATGCTTGCCATGGACCTG............................................................................................GGATGGATGGGTCCAAATTATTCAATTTCAACAGCATGTGCAACAAGCAACTTCTGCATATTGAATGCCGCTAACCACATCATTAGAGGTGAAGCT..............................................................................................................................................................GACATGATGCTGTGTGGTGGATCAGATGCAGCAATTATACCAATTG..........................................................................................................GATTGGGAGGATTTGTTGCTTGCAGAGCACTTTCACAGAGAAATACCGACCCTTCAAGAGCTTCTCGGCCTTGGGATAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCGATGGATTTGTCATGGGTGAAGGAGCTGGTGTCCTGCTTCTGGAAGAACTTGAGCATGCCAAG.........................................................................................................................................CAAAGAGGTGCAACAATCTATGCTGAATTTCTAGGTGGAAGTTTTACTTGTGATGCTTATCACATGACTGAGCCTCATCCTAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTTAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAAAATCCAGAG.................................................................................................TTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGNTGAGGCTGTGGCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418578" ref_strand="-" ref_description="SGN-E418578 [STM-27-H18]">
      <seq>gcaaagaggtgcaacaatctatgctgaattttaggtggaagttttacttgtgatgcttatcacatgacagagcttcatcctaaaggaactggagtcatcctatgtgtagagaaggcattagctcagtcaggggtatccaaggaagatgtgaactacattaatgcgcatgcaacatccacaccagcaggagatcttaaggagtatcaagctcttgttcattgttttggccagaatccagagttgcgagttaactccacaaaatctatgattggtcacctgcttggagctgctggtgctgttgaagctgtggcaactattcagcaattcgaactggttgggttcatccaaatattaatcttgaaaacccagatgaaggcgtggatacaaatatacttgttggtcccaaaaaggaacgactggatattaaggtggcattatctaattcatttggatttggtggccacaactcatcaatcttatttgctccttacaagtagatctctcgaacaatattgatgcatctgacagatacaaggaatatttgaaaggatccttgattcccagagttacttgaaggacactcgtacaagaggcctcagtctcgaagaatttgtcttttggaagatagtctaatgacggtggtacacttccctctgatatacagaattcgttttagatgattgttggagaaagaagatcctgaagtgaagaatgggggaaggatcaagttttatctccttttctcttagctaaattattatatactaaactaaattgtttctcatatatcctttacacataacagcaaatgatttatgtgacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="16433" stop="27408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16733" g_stop="16818" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16819" i_stop="19142" i_length="2324">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19143" g_stop="19297" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="240" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19298" i_stop="19394" i_length="97">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19395" g_stop="19475" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="320" r_length="80" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19476" i_stop="23951" i_length="4476">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23952" g_stop="24011" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="380" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24012" i_stop="24462" i_length="451">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24463" g_stop="24617" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="535" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24618" i_stop="26860" i_length="2243">
            <donor d_prob="0.883" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26861" g_stop="27100" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="783" r_length="248" r_score="0.829"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="821" polyA_stop="833"/>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E418578" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418578" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16733" e_stop="16818"/>
          <exon e_start="19143" e_stop="19297"/>
          <exon e_start="19395" e_stop="19475"/>
          <exon e_start="23952" e_stop="24011"/>
          <exon e_start="24463" e_stop="24617"/>
          <exon e_start="26861" e_stop="27100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGAGGTGCAACAATCTATGCTGAATTTCTAGGTGGAAGTTTTACTTGTGATGCTTATCACATGACTGAGCCTCATCCTAAAGGTAATTTCTCTCATATATATATTCTTGATTTTATCCTTTGGGGTGGCCTAGTGGTTTGGGCTTGGACTTCCATGTTAGAGGTTTCAAGTTCGAAACCCATTGTCTATAAAAGCAAGGGGTTTGCCTTGGTTGAGCTCGTCGCACCGGGCTTGCCTGATTTGCGAGCTATTGCATAGGAGTGGGGGGTTTGCCTTGGGCGCACCCAAAGGGTAGCGACTGTGGGTTGCTCTTGTCATAAAAAATATATATTCTTAATTTGCGTAGATGTGTCCATTTTGAATGGGCGTGACATAGATATTCTTCTTGTGGACCTTTAAACTCAGTAAAACTTAGCAAAAATTGCATTTACTCATACCAGAGAGTTATACGGTTATGCACATCCTTATCGTATCCATATGGGTGCAGAAATCTATATCATCCAAAAACTGTATAGTTCTCTTGTGAAGCCACTCAGTTGTTGGGGTTCTTTTTCATTGGTTAATAAGATAGAGTTAATTAGATAGAGTTAGTAAGATTTCTCAAGAAACGAAGATCAATGTAGCTTGAGTCTAAGAAACCAAATGGGTAGGAACCAAGACTAGGGATGTAGACGGGTTTAAGTTGTGGTAATCAGAAAGCTTGGGGCACAGATATTTTAGTAGTCAAGGAACTCAGGGAGCAAGTGGTAGAGGTTAGGAGGATGAATGACATGATGATGGCCATTAAACTAGCTTTGTGAGGGCTCACTTTTAACATTATTTGTGCATATGCGATTTTTGTGGGTTTGGACGAGGAGATCAAAAAGCACTTCTAAAAGGAGTAGGATGAGGTTATCAGAGGTATTCGACCGACTGTGGAACTATTGTTAGGAGGAGACTTTAATGGTTACATATGGACCACTTCAACAGGATATGATGATGTTCATGGAGGTTTCAATTTTGGGGATAGAAATGAAGGAGTTTCCCTTTTAGATTGCGCAAAAGCTTTCGAGATGGTCATAGCTAACTCGAGATTCCAATAGAGGGAAGAGCACCTGGTGACCTATGCTAGTACGGTGGTTAAGACTCGGATAGATTGCGTGCTCCTTTGGAAGTGTGATAGAGGTTTATGCAAGACTGCGAGGTTATTATTGGTGAAAATTTTTCGTACTATATGCGGCTAGCCTCCTCCTTGCCTCTTCTCATGATTAGTAGTATTGTTAAGTAATTATGTAGTTTCTTATTCTTCTATGTGTATTACTATTTGTTGCTTCATTTACTTTGTATATTTGTATTTGCTTGTCATTTTTCATGGAATCCTGCTTTGATGACATCCCTTTTGAGCGAGGGTTTATGAGAAACGACCACTTTAATCCACAAAGGTAGGGGGTAAGGTCGGCGTCCATCTTCCCCTCTCTATACCCCACTCCAATAAAATTGGAACGATACAAATGTATGTTTGTCGAGCAACATCAAATGTAAGATTTACTTTTTGCATGATGAAACAGAAGCATTTTTAGGTTTAATTTACCCCTCCAACTACTAGCTGTGACATAGAGGCCTCCAAAATATGATTCCATCACTCTAACATCTTATAATCTGGAGGGGTCTAAATTTTGAGGGGAAAGTTATATGGCTAAACGGTTAGAGTAATACATCTCCTAAACCTCTTCTGTTTTCATGTTTTCTTTCTATGGCCTTAAATATCTGGTGCGTTGCTCCTTCTAACAAATATAGCAGCAGATATTCTTGAATCTGTCTATCCATCCATCTCATAAAAGGTAATGCCTCTAACCATATATAGGATTTGATCCTTTGATTATACGTTGGCTTCGTTTGAAAAAAAATATGTTTCTTTTCTTACCTAATGACTTATAACTTGCATGTTTTTCTTTAATCACCAAGATTTTGTTCCACAAGGTATTAACTCCTTTATTGACATCTTATAATAATTACATTTTATGGGATGCACGAGTCACACAAAACTCCTGATGGGTTCCTGTGTGGCCCACCTATCTTGTCATGCTTGACTTTATTCTTTTTCTCATGTCAACTGCAGATCTCGAAATAAACTGCTACTTCCTGGTTGTAGTGACTTCAATTGTATACTATTTCTTAGCTTCTTTTTCTGTTTTGCCTAAGTTGGAGATACAGTTGTACGAATCACGCCTAGTTCCTCAAGTTCTAGTATTTTTTGATAATTGTAGTTGAGAGATTCTTCCAAACCAGCTAGATATAGTTGCACAATTTGTAGCTTACTCAGAACAGAATTTAGTATAACATAATAAGAATGCACAATCTCATGTTTACTGAGATATACAATTAAGAAAGGAAACCTTTGAACTCTTCTATTCCCTAAACTAGCAGGAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTTAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAAAATCCAGAGGTTAGATTGAATTTCTCTCATTTAACTACTGTGTTCATGCCAATCCTCTCAGGTTTTTGGTTCAGCTGTTTAATCAGCCACTGCTCTATGTTTTCAGTTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAGGCTGTGGCAACTATCCAGGTGCTTTTATTTCATAACCCCTCAAAGTTTGCTGCAGCTGTGGTTCAGTTGCTTTCTAGTTTCTTGTGTAACATTTCATCCAACTATTTTCTTGCATATAGATATCCTGGCTGCAGATTCTGATATTTCTGCTTGTGTATCCTGTGGGTTGATTTGGATATTATTTTGGTGTCATACTGTTGAATAGACCAAATCATTCTGTTATTTATGTAAGCATCTAATTGAACTATATAACGTCATTAGCATCTCTACTATTTTTAGCAACCCTTTCGGGGGAATTGAAGAAGCAACAGACTTATTTGGCTTCTCATTTGTTTGTGCGCTCTAGAACTTGTTTTTTCCTTGAGAGTGAACTCGTGGCTGCTAATACAGAGAGCACAAGTGAAGCTTATTTTCTTAGAGTTTCAATTTTTCACAATTTCGTGACATGAATTGCTTTCCTTTTGAATTTGAGTTCACGTATTGATGTAATAGACAGAAAAGAATATGCATGGTTGTTAATATCAGCTGCCAGTGAAAATGCATATTTATGCCAAATAGTAGCGATGGCACGTTGTGGGACCTAAAGAAGGGGAAGCAAAGGGACTGGCTATGTTTTTACAGAGAGGAGAATTAGTAAAGGCCTAATGACCTGGTCTTGATGATGTCGAATTGTTGGTCAATGTAACCTCAAGTAGACATAAATGACTTGTAGGAATAGAAACATCAACTACCTTGGAATCTGGAAAACTAAACCTAAAAGTGTTGACGCGATCCTTTAATATTTATCTGCTTTCAAGTTCAAGAATCTCTTTACAGACGGTTATGATTTACTTCTGATCTGCCAATCTGATTTGTTGAGCATAAACCTGGCAAGAGCATCAGCAACGATTTGCTTAGGACATGCATACATAAAAATGAAGTGCATGGCAGCGTATGTGAATATCATATTGAAAGCTGCACCCCTTTGATATTACCCTTAGATATGGGTATCTCCACTTCGTACAAAGTTCATCCAGTTAGAAGGTGTAAATGCATGGAATGGGGTAATGCAAGCTACTAAAATAACCAGTTTCTAGCCGCGATATCTGGGTACGCTCTGGAAAGCCACAGTAGGATGCCCTTAATGTTATTAGTGGTATATAGACCAACTTAATCAAGGTGAGGGTATACAAAATTGAGTTCTTTATATATATATATATATATTGTTGCTTAGAATATTGCACATCGGACAGATTTTTTGATGTTATCCTCCGTCGGAAGACGACGTGTCAAAGTAAAAATTAAGTTACCCATAATTCCTTGCCTCGAAGTTAAATAGGCCGTGATACATTATTTGTCATCTGAAATGTTGTCTTCAGATGTTATAAATGATAACGCAATACAGGTATTTTGCAAGCACTTATGCAGGTGGACTAGGAAATTCTTTTATCTAGAAAAGTTACTCCATTTTAGGCCTGGGTTAGGTCTTCTCTGATGTTTAGACTAGGGAAAAATACATGAAATTCAGGTATACTTTGTAAATATTTCCTGGCTACGTATTCGAACCATGAATATGTCATGGATATATTAGACAATAGTGATACTTCTGAGGTCTTTGTGTGTGTGTGTGTAAACAGGTTAACTTACACTAGATTTTTGGGTGTAATCTATAAATTTCTAGGTAACAACTGTTTATCATCAAATAATTGGGAAAAGAGTTCTGGAGAAAACAAAAATATGGATAGTTGGAGTCAAGTTGAAGGAAAGTTTCATATTCAATACAGTGGCCTTTCAATCTGTCGTTACCACCAGAAATGAGAGTGTCCTTTTAAATCTTTGAATAATTTCTGGTCAGGTGGTTATAAGGTAGGATGTAAATGATATAGGAGCTATACAAAATGTATATAATCAATTTAGTTTTATAAAAAAAGTGTGGGTACATGCTTAAGTCCTGAAACTGTGTGCAATGATGGCAATGTTTCGCATAACAGTGCTTTATGCTAGTATCAAGGTGCGAAGGTGTGTGCTTGTTGAAACCATGACTTTTGAGGGAACATAAGCAATAAATCTCTTGCAAGGTGATGTATTTTTACGTTAACAGAAATGTTATATTAATTCCTAATCAATGGATAAATATGTTAGTCATCTGAAATTCAAAATTACTAATTATTATAGCATAAAAGCTAATCCCTGACCAAGAAATCTGCAACCGTATTCTTTTATTTGACTCAGAATCTTAGTATGGATTTGGACTCGGTTGTCACGGTTTTCATTTCATATATTTCACTTCTTTTAGTTCCTTTGTTCACATGATAATGGTTTGTCTTTATACTTCTCTTGCAGAATGTGTGTTAAGTATAGCACGTGCTTCAATTACTTCTTTGGTGTAGAAGTCCAGCTGATCTTGTCATTTTTCCACACTTTTCACCTTTGAACAACATTAGTGCCCTCTCTCTAAGTTAGTAGTATAGATGTTCATAGCTAGGTGGTTCCAAATTCATAGTTTTTTTAGGTTGTAATCCAACTTTTAAAGGAAGACATCCATAGAAGTTGTAGGATGTTGTATTATTTTTTAAATGATAAAATCATATCTTCACCAACTTCTTGTTTGCATTTAAAGAAGAAGAAAAGAAGCATACTTCGGAAAAGGGCCTAAAATACCCTTGAAGTATTGAAAATGGTACAAAATTATCCTTCATCCACCTATTGGCTCCAAAATGCCCTTTTCATCCACCTATTGGGTCCAAAATACCCTTGTCATCCACCTTTGGGTTTAAAATTGACCACTTCTTTGATAATTTTAAAATTAAATTCTTTAAAAACTTTTTAAAATACTTGCCGTTCACTTTTGGTTATAATTTAATTTATTAATATAATTTATAAATCAACCCACTCATTACTAACTAAACCCCACCCAAGTAATAATCCAACTATAATATAAAAATCTTCATAAACACTACTAAAGCACAATGAAATTATATATTCCTGAAAATGACATCTAAAATTATTCGAGTCCGAATCGAAGCTTCAATTAAATTTAGATTGAACTGCTTATTTAGGAGGACACTTTCAATATGATTGATTGAATTTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTAATTCACGCCCTTTTTCAAAAATATAATTTTATAAATACTTATGATTTGTTTTAAAACCTTTAATATATTATTTTGAAAAAAAGTTGCCTATGAAGTAACATCACATAATTGAAACGTAAGAATAATTAAGATGAACATAGTCTGACTTTCAAGTTTATCGATAATTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGAGATATTTTTGCCTCAAATTTTTAAAAACACTCAATTGACAGTAGATTTTCTTTTATTGCATTAATAATGTGACGGGTTTATTAATTTGGAGGGGTTTAATTAGTTTTGGGTTGATAGTGGATTTATTTATAAATTATACTAATAAATTAAATTATAACAAATAGTTGAGTGCCACATATTTTAAAAAATATTTAAATAGTTTAAACATAAAACCGTTAAATAAGTGGTCAATTTTGAACCAATAGGTGGATAACAAGGGTATTTTGGATCCAATAGGTGGGTGGAAAGGGTATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCTAATACTTTGAGGGTATTTTAGGCCCTTTTCCGTTTTTTATTGTTAAGAAAAAGGCAGCATACTTGTACAAGGAAGTCGCATCATATTCATAAAAGTATATGTAATCTGAGTTTTGAAAGAACATATTCATGCCTGTAGAAGACATTTTCAAAGGAACATTGGTGGGAGCCTTGAAACAATTCACAGCAGGAGCTTTCCATAGTGGTTAATTATTTTATGTTAGATATTGTTGCTTGCTGCTGTGAGTTACTCTAGCCTGAAGTTAAGAACCCAAAAGAACTGGGAGTAGAATAACTTTGTCAACTTAAATTATTTAAATAGATGTTGACTGAAGAAGCAAAAGAGATGAACATTATCTAATTTTTCTTTACCATGTGGGTATAGTTTTTCTTTTTGGCTACGAGAGTAGCTATGGCGATTGTTTTAGGATAAGTGATTACCTATTTTGAGATAATTCAAAGACAATTTTCTGCTGCTAGATAGTTCCTTGCAGTTTGTTGGTGCTGCACAGTGTAATTGAAGTTAGATTAAAGTTTAATCATATCATCTTTGTTCTTGAGCTTCATTATAATCTGCCTTGACAGTGGAAAGGATGCTGAAGATAGACACTCCTTGGACATTTACTTGAGCATGTTGCAGTAACATGTTTTTGTTATAGTTTATTTGTGATAATGATTAATTAATCTGATAGTACATAGATGTTGCAGAACTTATTCTTAAGGTGATTGATGATTACAAATTTCATCCTGTAAATCTTTCTTGACTATTCTTTTAAACGTGCCTCTTGCAAAAATTATCTGGCTGAAACTGCTGACTGACGGTTGGAATTGGACTTCTCAGGCAATACGAACTGGTTGGGTTCATCCAAATATTAATCTTGAAAACCCAGATGAAGGCGTGGTAAGGATCTATATTGTGTGCATTGTCAACAAATTCTTGTTCATTTAAGCATGGAATATCATCATACATAAAGAATTTTATCACAAGAAACTGCTAAGAAAGTTTGCTGTATCAAGAGCATGCAGTTGGTTACACTTAATGGCTTGACCAGCTAGTTAAGTCTAACTTAGCAGCTTCTCTGAATTTTTTACTATATCGCCAAAAGCTGGTTTACAGTGGAGCCTTTTATGGCAATGAAACTACGAGTATGACTCACAAGTCTATTAGTTTGATTCACATTGTCTGCATTAGTAGGGCTTTGCTCTGATATGGCAACCAAGACAGATTCTTTTGTGACATGAATATACAAACCATTTGATATATCATGTCTCCCCTGTTTTACTATTTCAGCTTTACTTTTTATTGACCTGGTAATCACCGCATCTGATGATATGTAATATCAATGAAACAGGATACAAATATACTTGTTGGTCCCATAAAGGAACGACTGGATATTAAGGTGGCATTATCTAATTCATTTGGATTTGGTGGCCACAACTCATCAATCTTATTTGCTCCTTACAAGTAGATCTCTCAAACAATGTTGATGCATCTGACAGATACAAGGTATGTAGGTTCATGCTTGTTTGTATTGAGGAAGCGAGGAAGATTAAGAAAGCCATGTATTTTGGAGTGTACACTTAGCAAATCTAGTTAGTTGTTTGGTAGGGAACAAAATGGGAGAAGAAGGATCACTGTTTTAACATGTAACAACCTAGTTAGTTTGTTTCGGCAAAATAGAACTTCATTTCTTCTAGACTATGGGACCTGCTTCCTACTAAACCCCATATGCAGCAGTGATCAAAGTAAATTTGAGAATCTTGAGTCTGGAATATGACTATCTTATTCTTCGATTTTATTATTCGTTGTCTTTTTTGCTACAATTATCGTATGATTTGTTGTTGTTACTTTTCTCGTCTATGTTATTTTGATCGTGGCTTCTTCACTACTGCATTCCTTTTCAAAACTGCTTTCATATGCTTTAGTTTACTTGAGCCGAGGGTTTGTCGGAAACAACCTCTCGACGGTCTGCATACACACCACCCTACCCAGAACCCACTTGTGGGATTACATCGGGTATTGTTGCTGTCAAGTCTGGAAAAAGAGTGTGGTCGGAGACTATACTTTCTAGGCTATGCCAAGCTCTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCCAAGCTTGCTACTACTTGAACAAGTGGATTCAATATTTTGGTACATGAACACCTATTTGGCAAAAAGAGAAGTGTTAGCAATGACTAAAGGTTATATCAAACTGTTTGGTAAACAGATTACCTTTTTACGATAAAAGGGAATCACCTGAGCTTGGCAATTTAGCGAGAGTTGATAGCTTTTCTATTTCAAAATGTTGCTAGCTCCTTGTAGCATTGATTCACATCTGTAATGGAAACCAAATGAAACAAGCCTCCTTTCCCCCCACTTCTTTTTCTCTTACAGTTACTCCCTTTATATTCATTGAACATATGTTTTCATTTGCTTTATTTTAGGAATATTTGGAAGGATCCTTGATTCCCAGAGTTACTTGAAGGACACTCGTAGAAGAGGCCTCAGTCTCGAAGAATTTGTCTTCAGGAAGATAGTCTAATGACGGTGGT--ACTTCCCTCTGATATACAGAA------TT---TGATTGTTGGAGAAAGAAGATGCCGAAGCAAAGAATGGGGGGAGGATCAAGTTTTTTTTATCTCCATTTCTCTTAGCTAAATTA-TACTTACTTAACTAAATTGTTTCTC</genome_strand>
        <mrna_strand>GCAAAGAGGTGCAACAATCTATGCTGAATTT-TAGGTGGAAGTTTTACTTGTGATGCTTATCACATGACAGAGCTTCATCCTAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTTAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAGAATCCAGAG.................................................................................................TTGCGAGTTAACTCCACAAAATCTATGATTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAAGCTGTGGCAACTATTCA-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCGAACTGGTTGGGTTCATCCAAATATTAATCTTGAAAACCCAGATGAAGGCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAATATACTTGTTGGTCCCAAAAAGGAACGACTGGATATTAAGGTGGCATTATCTAATTCATTTGGATTTGGTGGCCACAACTCATCAATCTTATTTGCTCCTTACAAGTAGATCTCTCGAACAATATTGATGCATCTGACAGATACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTGAAAGGATCCTTGATTCCCAGAGTTACTTGAAGGACACTCGTACAAGAGGCCTCAGTCTCGAAGAATTTGTCTTTTGGAAGATAGTCTAATGACGGTGGTACACTTCCCTCTGATATACAGAATTCGTTTTAGATGATTGTTGGAGAAAGAAGATCCTGAAGTGAAGAATGGGGGAAGGATCAAG----TTTTATCTCCTTTTCTCTTAGCTAAATTATTATATACTAAACTAAATTGTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403789" ref_strand="+" ref_description="SGN-E403789 [PPC-11-B6]">
      <seq>gagagaactagtctcgagttttttttttttttttttagcttactcaaaacagaatttagcttaacataataagaatgcacaatctcatgtttactgagatatacaatagagaaaaggaaaactttgaactcttctattctctaaactatcaggaactggagtcatcctatgtgtagagaaggcattagctcagtcaggggtatccaaggaagatgtgaactacattaatgcgcatgcaacatccacaccagcaggagatctcaaggagtatcaagctcttgttcattgttttggccagaatccagaggttagattgaagttctctcattgaactactgtgtccatgccaatcctctcaggtttttggttcagctgtttaatcaaccactgctctatgttttcagttgcgagttaactccacaaaatctatgatcggtcacctgcttggagctgctggtgctgttgaagctgtggcaactattcaggttcttttatctcataactcctcaaagtttgctgcagctgtagttcagttgctttctagtttcttgtgtaacatttcatccaactattttcttgcatagtagatttcctggctgcagattctgatatttctgcttgtgtaccctgttgggtgatttggatattattttggtgtcatcctgttgaatagacaaatcattctgntatttatgtaagcatctaattgaactagataacgtcattagcatctcatactattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="13505" stop="20034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18754" g_stop="18776" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.522"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18777" i_stop="19014" i_length="238">
            <donor d_prob="0.356" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19015" g_stop="19734" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="745" r_length="722" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E403789" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18754" e_stop="18776"/>
          <exon e_start="19015" e_stop="19734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAACTCCTGATGGGTTCCTGTGTGGCCCACCTATCTTGTCATGCTTGACTTTATTCTTTTTCTCATGTCAACTGCAGATCTCGAAATAAACTGCTACTTCCTGGTTGTAGTGACTTCAATTGTATACTATTTCTTAGCTTCTTTTTCTGTTTTGCCTAAGTTGGAGATACAGTTGTACGAATCACGCCTAGTTCCTCAAGTTCTAGTATTTTTTGATAATTGTAGTTGAGAGATTCTTCCAAACCAGCTAGATATAGTTGCACAATTTGTAGCTTACTCAGAACAGAATTTAGTATAACATAATAAGAATGCACAATCTCATGTTTACTGAGATATACAATTAAG-AAAGGAAACCTTTGAACTCTTCTATTCCCTAAACTAGCAGGAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTTAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAAAATCCAGAGGTTAGATTGAATTTCTCTCATTTAACTACTGTGTTCATGCCAATCCTCTCAGGTTTTTGGTTCAGCTGTTTAATCAGCCACTGCTCTATGTTTTCAGTTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAGGCTGTGGCAACTATCCAGGTGCTTTTATTTCATAACCCCTCAAAGTTTGCTGCAGCTGTGGTTCAGTTGCTTTCTAGTTTCTTGTGTAACATTTCATCCAACTATTTTCTTGCATA-TAGATATCCTGGCTGCAGATTCTGATATTTCTGCTTGTGTATCCTGTGGGTTGATTTGGATATTATTTTGGTGTCATACTGTTGAATAGACCAAATCATTCTGTTATTTATGTAAGCATCTAATTGAACTATATAACGTCATTAGCATCTC-TACTATTTTT</genome_strand>
        <mrna_strand>GAGAGAACTAGTCTCGAGTTTTT..............................................................................................................................................................................................................................................TTTTTTTTTTTTTAGCTTACTCAAAACAGAATTTAGCTTAACATAATAAGAATGCACAATCTCATGTTTACTGAGATATACAATAGAGAAAAGGAAAACTTTGAACTCTTCTATTCTCTAAACTATCAGGAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTCAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAGAATCCAGAGGTTAGATTGAAGTTCTCTCATTGAACTACTGTGTCCATGCCAATCCTCTCAGGTTTTTGGTTCAGCTGTTTAATCAACCACTGCTCTATGTTTTCAGTTGCGAGTTAACTCCACAAAATCTATGATCGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAAGCTGTGGCAACTATTCAGGTTCTTTTATCTCATAACTCCTCAAAGTTTGCTGCAGCTGTAGTTCAGTTGCTTTCTAGTTTCTTGTGTAACATTTCATCCAACTATTTTCTTGCATAGTAGATTTCCTGGCTGCAGATTCTGATATTTCTGCTTGTGTACCCTGTTGGGTGATTTGGATATTATTTTGGTGTCATCCTGTTGAATAGA-CAAATCATTCTGNTATTTATGTAAGCATCTAATTGAACTAGATAACGTCATTAGCATCTCATACTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433505" ref_strand="+" ref_description="SGN-E433505 [STM-58-H13]">
      <seq>gagagaactagtctcgagttttttttttttttttttagcttactcaaaacagaatttagcttaacataataagaatgcacaatctcatgtttactgagatatacaatagagaaaaggaaaactttgaactcttctattctctaaactatcaggaactggagtcatcctatgtgtagagaaggcattagctcagtcaggggtatccaaggaagatgtgaactacattaatgcgcatgcaacatccacaccagcaggagatctcaaggagtatcaagctcttgttcattgttttggccagaatccagaggttagattgaagttctctcattgaactactgtgtccatgccaatcctctcaggtttttggttcagctgtttaatcaaccactgctctatgttttcagttgcgagttaactccacaaaatctatgatcggtcacctgcttggagctgctggtgctgttgaagctgtggcaactattcaggttcttttatctcataactcctcaaagtttgctgcagctgtagttcagttgctttctagtttcttgtgtaacatttcatccaactattttcttgcatagtagatttcctggctgcagattctgatatttctgcttgtgtaccctgttgggtgatttggatattattttggtgtcatcctgttgaatagaccaaatcattctgttatttatgtaagcatctaattgaactagataacgtcattagcatctcatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="13505" stop="20029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18754" g_stop="18776" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.522"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18777" i_stop="19014" i_length="238">
            <donor d_prob="0.356" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19015" g_stop="19729" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="741" r_length="718" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E433505" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18754" e_stop="18776"/>
          <exon e_start="19015" e_stop="19729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAACTCCTGATGGGTTCCTGTGTGGCCCACCTATCTTGTCATGCTTGACTTTATTCTTTTTCTCATGTCAACTGCAGATCTCGAAATAAACTGCTACTTCCTGGTTGTAGTGACTTCAATTGTATACTATTTCTTAGCTTCTTTTTCTGTTTTGCCTAAGTTGGAGATACAGTTGTACGAATCACGCCTAGTTCCTCAAGTTCTAGTATTTTTTGATAATTGTAGTTGAGAGATTCTTCCAAACCAGCTAGATATAGTTGCACAATTTGTAGCTTACTCAGAACAGAATTTAGTATAACATAATAAGAATGCACAATCTCATGTTTACTGAGATATACAATTAAG-AAAGGAAACCTTTGAACTCTTCTATTCCCTAAACTAGCAGGAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTTAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAAAATCCAGAGGTTAGATTGAATTTCTCTCATTTAACTACTGTGTTCATGCCAATCCTCTCAGGTTTTTGGTTCAGCTGTTTAATCAGCCACTGCTCTATGTTTTCAGTTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAGGCTGTGGCAACTATCCAGGTGCTTTTATTTCATAACCCCTCAAAGTTTGCTGCAGCTGTGGTTCAGTTGCTTTCTAGTTTCTTGTGTAACATTTCATCCAACTATTTTCTTGCATA-TAGATATCCTGGCTGCAGATTCTGATATTTCTGCTTGTGTATCCTGTGGGTTGATTTGGATATTATTTTGGTGTCATACTGTTGAATAGACCAAATCATTCTGTTATTTATGTAAGCATCTAATTGAACTATATAACGTCATTAGCATCTC-TACTA</genome_strand>
        <mrna_strand>GAGAGAACTAGTCTCGAGTTTTT..............................................................................................................................................................................................................................................TTTTTTTTTTTTTAGCTTACTCAAAACAGAATTTAGCTTAACATAATAAGAATGCACAATCTCATGTTTACTGAGATATACAATAGAGAAAAGGAAAACTTTGAACTCTTCTATTCTCTAAACTATCAGGAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTCAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAGAATCCAGAGGTTAGATTGAAGTTCTCTCATTGAACTACTGTGTCCATGCCAATCCTCTCAGGTTTTTGGTTCAGCTGTTTAATCAACCACTGCTCTATGTTTTCAGTTGCGAGTTAACTCCACAAAATCTATGATCGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAAGCTGTGGCAACTATTCAGGTTCTTTTATCTCATAACTCCTCAAAGTTTGCTGCAGCTGTAGTTCAGTTGCTTTCTAGTTTCTTGTGTAACATTTCATCCAACTATTTTCTTGCATAGTAGATTTCCTGGCTGCAGATTCTGATATTTCTGCTTGTGTACCCTGTTGGGTGATTTGGATATTATTTTGGTGTCATCCTGTTGAATAGACCAAATCATTCTGTTATTTATGTAAGCATCTAATTGAACTAGATAACGTCATTAGCATCTCATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251384" ref_strand="+" ref_description="SGN-E251384 [cLEG-23-N6]">
      <seq>aatccagagttgcgagttaactccacaaaatctatggttggtcacctgcttggagctgctggtgctgttgaggctgtggcaactatccaggcaatacgaactggttgggttcatccaaatattaatcttgaaaacccagatgaaggcgtggatacaaatatacttgttggtcccataaaggaacgactggatattaaggtggcattatctaattcatttggatttggtggccacaactcatcaatcttatttgctccttacaagtagatctctcaaacaatgttgatgcatctgacagatacaaggaatatttggaaggatccttgattcccagagttacttgaaggacactcgtagaagaggcctcagtctcgaagaatttgtcttcaggaagatagtctaatgacggtggtacttccctctgatatacagaatttgattgttggagaaagaagatgccgaagcaaagaatggggggaggatcaagttttttttatctccatttctcttagctaaattatacttacttaactaaattgtttctcttacacatagcagcaaatgacccttaggtgtttgcatatgggccttaatgctagtgtactagtttctttgtataccatatatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="19093" stop="27486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19289" g_stop="19297" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19298" i_stop="19394" i_length="97">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19395" g_stop="19475" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="90" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19476" i_stop="23951" i_length="4476">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23952" g_stop="24011" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="150" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24012" i_stop="24462" i_length="451">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24463" g_stop="24617" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="305" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24618" i_stop="26860" i_length="2243">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26861" g_stop="27186" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="631" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E251384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19289" e_stop="19297"/>
          <exon e_start="19395" e_stop="19475"/>
          <exon e_start="23952" e_stop="24011"/>
          <exon e_start="24463" e_stop="24617"/>
          <exon e_start="26861" e_stop="27186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCAGAGGTTAGATTGAATTTCTCTCATTTAACTACTGTGTTCATGCCAATCCTCTCAGGTTTTTGGTTCAGCTGTTTAATCAGCCACTGCTCTATGTTTTCAGTTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAGGCTGTGGCAACTATCCAGGTGCTTTTATTTCATAACCCCTCAAAGTTTGCTGCAGCTGTGGTTCAGTTGCTTTCTAGTTTCTTGTGTAACATTTCATCCAACTATTTTCTTGCATATAGATATCCTGGCTGCAGATTCTGATATTTCTGCTTGTGTATCCTGTGGGTTGATTTGGATATTATTTTGGTGTCATACTGTTGAATAGACCAAATCATTCTGTTATTTATGTAAGCATCTAATTGAACTATATAACGTCATTAGCATCTCTACTATTTTTAGCAACCCTTTCGGGGGAATTGAAGAAGCAACAGACTTATTTGGCTTCTCATTTGTTTGTGCGCTCTAGAACTTGTTTTTTCCTTGAGAGTGAACTCGTGGCTGCTAATACAGAGAGCACAAGTGAAGCTTATTTTCTTAGAGTTTCAATTTTTCACAATTTCGTGACATGAATTGCTTTCCTTTTGAATTTGAGTTCACGTATTGATGTAATAGACAGAAAAGAATATGCATGGTTGTTAATATCAGCTGCCAGTGAAAATGCATATTTATGCCAAATAGTAGCGATGGCACGTTGTGGGACCTAAAGAAGGGGAAGCAAAGGGACTGGCTATGTTTTTACAGAGAGGAGAATTAGTAAAGGCCTAATGACCTGGTCTTGATGATGTCGAATTGTTGGTCAATGTAACCTCAAGTAGACATAAATGACTTGTAGGAATAGAAACATCAACTACCTTGGAATCTGGAAAACTAAACCTAAAAGTGTTGACGCGATCCTTTAATATTTATCTGCTTTCAAGTTCAAGAATCTCTTTACAGACGGTTATGATTTACTTCTGATCTGCCAATCTGATTTGTTGAGCATAAACCTGGCAAGAGCATCAGCAACGATTTGCTTAGGACATGCATACATAAAAATGAAGTGCATGGCAGCGTATGTGAATATCATATTGAAAGCTGCACCCCTTTGATATTACCCTTAGATATGGGTATCTCCACTTCGTACAAAGTTCATCCAGTTAGAAGGTGTAAATGCATGGAATGGGGTAATGCAAGCTACTAAAATAACCAGTTTCTAGCCGCGATATCTGGGTACGCTCTGGAAAGCCACAGTAGGATGCCCTTAATGTTATTAGTGGTATATAGACCAACTTAATCAAGGTGAGGGTATACAAAATTGAGTTCTTTATATATATATATATATATTGTTGCTTAGAATATTGCACATCGGACAGATTTTTTGATGTTATCCTCCGTCGGAAGACGACGTGTCAAAGTAAAAATTAAGTTACCCATAATTCCTTGCCTCGAAGTTAAATAGGCCGTGATACATTATTTGTCATCTGAAATGTTGTCTTCAGATGTTATAAATGATAACGCAATACAGGTATTTTGCAAGCACTTATGCAGGTGGACTAGGAAATTCTTTTATCTAGAAAAGTTACTCCATTTTAGGCCTGGGTTAGGTCTTCTCTGATGTTTAGACTAGGGAAAAATACATGAAATTCAGGTATACTTTGTAAATATTTCCTGGCTACGTATTCGAACCATGAATATGTCATGGATATATTAGACAATAGTGATACTTCTGAGGTCTTTGTGTGTGTGTGTGTAAACAGGTTAACTTACACTAGATTTTTGGGTGTAATCTATAAATTTCTAGGTAACAACTGTTTATCATCAAATAATTGGGAAAAGAGTTCTGGAGAAAACAAAAATATGGATAGTTGGAGTCAAGTTGAAGGAAAGTTTCATATTCAATACAGTGGCCTTTCAATCTGTCGTTACCACCAGAAATGAGAGTGTCCTTTTAAATCTTTGAATAATTTCTGGTCAGGTGGTTATAAGGTAGGATGTAAATGATATAGGAGCTATACAAAATGTATATAATCAATTTAGTTTTATAAAAAAAGTGTGGGTACATGCTTAAGTCCTGAAACTGTGTGCAATGATGGCAATGTTTCGCATAACAGTGCTTTATGCTAGTATCAAGGTGCGAAGGTGTGTGCTTGTTGAAACCATGACTTTTGAGGGAACATAAGCAATAAATCTCTTGCAAGGTGATGTATTTTTACGTTAACAGAAATGTTATATTAATTCCTAATCAATGGATAAATATGTTAGTCATCTGAAATTCAAAATTACTAATTATTATAGCATAAAAGCTAATCCCTGACCAAGAAATCTGCAACCGTATTCTTTTATTTGACTCAGAATCTTAGTATGGATTTGGACTCGGTTGTCACGGTTTTCATTTCATATATTTCACTTCTTTTAGTTCCTTTGTTCACATGATAATGGTTTGTCTTTATACTTCTCTTGCAGAATGTGTGTTAAGTATAGCACGTGCTTCAATTACTTCTTTGGTGTAGAAGTCCAGCTGATCTTGTCATTTTTCCACACTTTTCACCTTTGAACAACATTAGTGCCCTCTCTCTAAGTTAGTAGTATAGATGTTCATAGCTAGGTGGTTCCAAATTCATAGTTTTTTTAGGTTGTAATCCAACTTTTAAAGGAAGACATCCATAGAAGTTGTAGGATGTTGTATTATTTTTTAAATGATAAAATCATATCTTCACCAACTTCTTGTTTGCATTTAAAGAAGAAGAAAAGAAGCATACTTCGGAAAAGGGCCTAAAATACCCTTGAAGTATTGAAAATGGTACAAAATTATCCTTCATCCACCTATTGGCTCCAAAATGCCCTTTTCATCCACCTATTGGGTCCAAAATACCCTTGTCATCCACCTTTGGGTTTAAAATTGACCACTTCTTTGATAATTTTAAAATTAAATTCTTTAAAAACTTTTTAAAATACTTGCCGTTCACTTTTGGTTATAATTTAATTTATTAATATAATTTATAAATCAACCCACTCATTACTAACTAAACCCCACCCAAGTAATAATCCAACTATAATATAAAAATCTTCATAAACACTACTAAAGCACAATGAAATTATATATTCCTGAAAATGACATCTAAAATTATTCGAGTCCGAATCGAAGCTTCAATTAAATTTAGATTGAACTGCTTATTTAGGAGGACACTTTCAATATGATTGATTGAATTTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTAATTCACGCCCTTTTTCAAAAATATAATTTTATAAATACTTATGATTTGTTTTAAAACCTTTAATATATTATTTTGAAAAAAAGTTGCCTATGAAGTAACATCACATAATTGAAACGTAAGAATAATTAAGATGAACATAGTCTGACTTTCAAGTTTATCGATAATTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGAGATATTTTTGCCTCAAATTTTTAAAAACACTCAATTGACAGTAGATTTTCTTTTATTGCATTAATAATGTGACGGGTTTATTAATTTGGAGGGGTTTAATTAGTTTTGGGTTGATAGTGGATTTATTTATAAATTATACTAATAAATTAAATTATAACAAATAGTTGAGTGCCACATATTTTAAAAAATATTTAAATAGTTTAAACATAAAACCGTTAAATAAGTGGTCAATTTTGAACCAATAGGTGGATAACAAGGGTATTTTGGATCCAATAGGTGGGTGGAAAGGGTATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCTAATACTTTGAGGGTATTTTAGGCCCTTTTCCGTTTTTTATTGTTAAGAAAAAGGCAGCATACTTGTACAAGGAAGTCGCATCATATTCATAAAAGTATATGTAATCTGAGTTTTGAAAGAACATATTCATGCCTGTAGAAGACATTTTCAAAGGAACATTGGTGGGAGCCTTGAAACAATTCACAGCAGGAGCTTTCCATAGTGGTTAATTATTTTATGTTAGATATTGTTGCTTGCTGCTGTGAGTTACTCTAGCCTGAAGTTAAGAACCCAAAAGAACTGGGAGTAGAATAACTTTGTCAACTTAAATTATTTAAATAGATGTTGACTGAAGAAGCAAAAGAGATGAACATTATCTAATTTTTCTTTACCATGTGGGTATAGTTTTTCTTTTTGGCTACGAGAGTAGCTATGGCGATTGTTTTAGGATAAGTGATTACCTATTTTGAGATAATTCAAAGACAATTTTCTGCTGCTAGATAGTTCCTTGCAGTTTGTTGGTGCTGCACAGTGTAATTGAAGTTAGATTAAAGTTTAATCATATCATCTTTGTTCTTGAGCTTCATTATAATCTGCCTTGACAGTGGAAAGGATGCTGAAGATAGACACTCCTTGGACATTTACTTGAGCATGTTGCAGTAACATGTTTTTGTTATAGTTTATTTGTGATAATGATTAATTAATCTGATAGTACATAGATGTTGCAGAACTTATTCTTAAGGTGATTGATGATTACAAATTTCATCCTGTAAATCTTTCTTGACTATTCTTTTAAACGTGCCTCTTGCAAAAATTATCTGGCTGAAACTGCTGACTGACGGTTGGAATTGGACTTCTCAGGCAATACGAACTGGTTGGGTTCATCCAAATATTAATCTTGAAAACCCAGATGAAGGCGTGGTAAGGATCTATATTGTGTGCATTGTCAACAAATTCTTGTTCATTTAAGCATGGAATATCATCATACATAAAGAATTTTATCACAAGAAACTGCTAAGAAAGTTTGCTGTATCAAGAGCATGCAGTTGGTTACACTTAATGGCTTGACCAGCTAGTTAAGTCTAACTTAGCAGCTTCTCTGAATTTTTTACTATATCGCCAAAAGCTGGTTTACAGTGGAGCCTTTTATGGCAATGAAACTACGAGTATGACTCACAAGTCTATTAGTTTGATTCACATTGTCTGCATTAGTAGGGCTTTGCTCTGATATGGCAACCAAGACAGATTCTTTTGTGACATGAATATACAAACCATTTGATATATCATGTCTCCCCTGTTTTACTATTTCAGCTTTACTTTTTATTGACCTGGTAATCACCGCATCTGATGATATGTAATATCAATGAAACAGGATACAAATATACTTGTTGGTCCCATAAAGGAACGACTGGATATTAAGGTGGCATTATCTAATTCATTTGGATTTGGTGGCCACAACTCATCAATCTTATTTGCTCCTTACAAGTAGATCTCTCAAACAATGTTGATGCATCTGACAGATACAAGGTATGTAGGTTCATGCTTGTTTGTATTGAGGAAGCGAGGAAGATTAAGAAAGCCATGTATTTTGGAGTGTACACTTAGCAAATCTAGTTAGTTGTTTGGTAGGGAACAAAATGGGAGAAGAAGGATCACTGTTTTAACATGTAACAACCTAGTTAGTTTGTTTCGGCAAAATAGAACTTCATTTCTTCTAGACTATGGGACCTGCTTCCTACTAAACCCCATATGCAGCAGTGATCAAAGTAAATTTGAGAATCTTGAGTCTGGAATATGACTATCTTATTCTTCGATTTTATTATTCGTTGTCTTTTTTGCTACAATTATCGTATGATTTGTTGTTGTTACTTTTCTCGTCTATGTTATTTTGATCGTGGCTTCTTCACTACTGCATTCCTTTTCAAAACTGCTTTCATATGCTTTAGTTTACTTGAGCCGAGGGTTTGTCGGAAACAACCTCTCGACGGTCTGCATACACACCACCCTACCCAGAACCCACTTGTGGGATTACATCGGGTATTGTTGCTGTCAAGTCTGGAAAAAGAGTGTGGTCGGAGACTATACTTTCTAGGCTATGCCAAGCTCTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCCAAGCTTGCTACTACTTGAACAAGTGGATTCAATATTTTGGTACATGAACACCTATTTGGCAAAAAGAGAAGTGTTAGCAATGACTAAAGGTTATATCAAACTGTTTGGTAAACAGATTACCTTTTTACGATAAAAGGGAATCACCTGAGCTTGGCAATTTAGCGAGAGTTGATAGCTTTTCTATTTCAAAATGTTGCTAGCTCCTTGTAGCATTGATTCACATCTGTAATGGAAACCAAATGAAACAAGCCTCCTTTCCCCCCACTTCTTTTTCTCTTACAGTTACTCCCTTTATATTCATTGAACATATGTTTTCATTTGCTTTATTTTAGGAATATTTGGAAGGATCCTTGATTCCCAGAGTTACTTGAAGGACACTCGTAGAAGAGGCCTCAGTCTCGAAGAATTTGTCTTCAGGAAGATAGTCTAATGACGGTGGTACTTCCCTCTGATATACAGAATTTGATTGTTGGAGAAAGAAGATGCCGAAGCAAAGAATGGGGGGAGGATCAAGTTTTTTTTATCTCCATTTCTCTTAGCTAAATTATACTTACTTAACTAAATTGTTTCTCTTACACATAGCAGCAAATGACCCTTAGGTGTTTGCATATGGGCCTTAATGCTAGTGTACTAGTTTCTTTGTATACCATATATATTC</genome_strand>
        <mrna_strand>AATCCAGAG.................................................................................................TTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAGGCTGTGGCAACTATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATACGAACTGGTTGGGTTCATCCAAATATTAATCTTGAAAACCCAGATGAAGGCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAATATACTTGTTGGTCCCATAAAGGAACGACTGGATATTAAGGTGGCATTATCTAATTCATTTGGATTTGGTGGCCACAACTCATCAATCTTATTTGCTCCTTACAAGTAGATCTCTCAAACAATGTTGATGCATCTGACAGATACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTGGAAGGATCCTTGATTCCCAGAGTTACTTGAAGGACACTCGTAGAAGAGGCCTCAGTCTCGAAGAATTTGTCTTCAGGAAGATAGTCTAATGACGGTGGTACTTCCCTCTGATATACAGAATTTGATTGTTGGAGAAAGAAGATGCCGAAGCAAAGAATGGGGGGAGGATCAAGTTTTTTTTATCTCCATTTCTCTTAGCTAAATTATACTTACTTAACTAAATTGTTTCTCTTACACATAGCAGCAAATGACCCTTAGGTGTTTGCATATGGGCCTTAATGCTAGTGTACTAGTTTCTTTGTATACCATATATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279149" ref_strand="+" ref_description="SGN-E279149 [cLEL-4-L1](-)">
      <seq>agattataatgaagctcaagaccaaagatgatatgattaaactttaatctaacttcaattacactgtgcagcaccaacaaactgcaaggaactatctagcagcagaaaattgtctttgaattatctcaaaataggtaatcacttatcctaaaacaatcgccatagctactctcgtagccaaaaagaaaaactatacccacatggtaaagaaaaattagataatgttcatctcttttgcttcttcagtcaacatctatttaaataatttaagttgacaaagttattctactcccagttcttttgggttcttaacttcaggctagagtaactcacagcagcaagcaacaatatctaacataaaataattaaccactatggaaagctcctgctgtgaattgtttcaaggctcccaccaatgttcctttgaaaatgtcttctacaggcatgaatatgttctttcaaaactcagattacatatacttttatgaatatgatgcgacttccctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="23985" stop="22876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23685" g_stop="23176" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E279149" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23685" e_stop="23176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTATAATGAAGCTCAAGAACAAAGATGATATGATTAAACTTTAATCTAACTTCAATTACACTGTGCAGCACCAACAAACTGCAAGGAACTATCTAGCAGCAGAAAATTGTCTTTGAATTATCTCAAAATAGGTAATCACTTATCCTAAAACAATCGCCATAGCTACTCTCGTAGCCAAAAAGAAAAACTATACCCACATGGTAAAGAAAAATTAGATAATGTTCATCTCTTTTGCTTCTTCAGTCAACATCTATTTAAATAATTTAAGTTGACAAAGTTATTCTACTCCCAGTTCTTTTGGGTTCTTAACTTCAGGCTAGAGTAACTCACAGCAGCAAGCAACAATATCTAACATAAAATAATTAACCACTATGGAAAGCTCCTGCTGTGAATTGTTTCAAGGCTCCCACCAATGTTCCTTTGAAAATGTCTTCTACAGGCATGAATATGTTCTTTCAAAACTCAGATTACATATACTTTTATGAATATGATGCGACTT-CCTTGTAC</genome_strand>
        <mrna_strand>AGATTATAATGAAGCTCAAGACCAAAGATGATATGATTAAACTTTAATCTAACTTCAATTACACTGTGCAGCACCAACAAACTGCAAGGAACTATCTAGCAGCAGAAAATTGTCTTTGAATTATCTCAAAATAGGTAATCACTTATCCTAAAACAATCGCCATAGCTACTCTCGTAGCCAAAAAGAAAAACTATACCCACATGGTAAAGAAAAATTAGATAATGTTCATCTCTTTTGCTTCTTCAGTCAACATCTATTTAAATAATTTAAGTTGACAAAGTTATTCTACTCCCAGTTCTTTTGGGTTCTTAACTTCAGGCTAGAGTAACTCACAGCAGCAAGCAACAATATCTAACATAAAATAATTAACCACTATGGAAAGCTCCTGCTGTGAATTGTTTCAAGGCTCCCACCAATGTTCCTTTGAAAATGTCTTCTACAGGCATGAATATGTTCTTTCAAAACTCAGATTACATATACTTTTATGAATATGATGCGACTTCCCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537667" ref_strand="+" ref_description="SGN-E537667 [TUS-56-G5]">
      <seq>ttttgaaagaacatattcatgcctgtagaagacattttcaaaggaacattggtgggagccttgaaacaattcacagcaggagctttccatagtggttaattattttatgttagatattgttgcttgctgctgtgagttactctagcctgaagttaagaacccaaaagaactgggagtagaataactttgtcaacttaaattatttaaatagatgttgactgaagaagcaaaagagatgaacattatctaatttttctttaccatgtgggtatagtttttctttttggctacgagagtacctatggcgattgttttaggataagtgattacctattttgagataattcaaagacaattttctgctgctagatagcttccttgcagtttgttgctgctgcacagtgtaattgaagttagattaaagtttaatcatatcatctttgttcttgagcttcattataatctgccttgacagtggaaaggatgctgaagatagacactccttggacatttacttgagcatgttgcagtaacatgtttttgttatagtttatttgtgataatgattaattaatctgatagtacatagatgttgcaaaacttattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="22922" stop="24128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23222" g_stop="23828" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E537667" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23222" e_stop="23828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAAGAACATATTCATGCCTGTAGAAGACATTTTCAAAGGAACATTGGTGGGAGCCTTGAAACAATTCACAGCAGGAGCTTTCCATAGTGGTTAATTATTTTATGTTAGATATTGTTGCTTGCTGCTGTGAGTTACTCTAGCCTGAAGTTAAGAACCCAAAAGAACTGGGAGTAGAATAACTTTGTCAACTTAAATTATTTAAATAGATGTTGACTGAAGAAGCAAAAGAGATGAACATTATCTAATTTTTCTTTACCATGTGGGTATAGTTTTTCTTTTTGGCTACGAGAGTAGCTATGGCGATTGTTTTAGGATAAGTGATTACCTATTTTGAGATAATTCAAAGACAATTTTCTGCTGCTAGATAG-TTCCTTGCAGTTTGTTGGTGCTGCACAGTGTAATTGAAGTTAGATTAAAGTTTAATCATATCATCTTTGTTCTTGAGCTTCATTATAATCTGCCTTGACAGTGGAAAGGATGCTGAAGATAGACACTCCTTGGACATTTACTTGAGCATGTTGCAGTAACATGTTTTTGTTATAGTTTATTTGTGATAATGATTAATTAATCTGATAGTACATAGATGTTGCAGAACTTATTCT</genome_strand>
        <mrna_strand>TTTTGAAAGAACATATTCATGCCTGTAGAAGACATTTTCAAAGGAACATTGGTGGGAGCCTTGAAACAATTCACAGCAGGAGCTTTCCATAGTGGTTAATTATTTTATGTTAGATATTGTTGCTTGCTGCTGTGAGTTACTCTAGCCTGAAGTTAAGAACCCAAAAGAACTGGGAGTAGAATAACTTTGTCAACTTAAATTATTTAAATAGATGTTGACTGAAGAAGCAAAAGAGATGAACATTATCTAATTTTTCTTTACCATGTGGGTATAGTTTTTCTTTTTGGCTACGAGAGTACCTATGGCGATTGTTTTAGGATAAGTGATTACCTATTTTGAGATAATTCAAAGACAATTTTCTGCTGCTAGATAGCTTCCTTGCAGTTTGTTGCTGCTGCACAGTGTAATTGAAGTTAGATTAAAGTTTAATCATATCATCTTTGTTCTTGAGCTTCATTATAATCTGCCTTGACAGTGGAAAGGATGCTGAAGATAGACACTCCTTGGACATTTACTTGAGCATGTTGCAGTAACATGTTTTTGTTATAGTTTATTTGTGATAATGATTAATTAATCTGATAGTACATAGATGTTGCAAAACTTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265959" ref_strand="+" ref_description="SGN-E265959 [cLEI-6-E14]">
      <seq>tttgaaagaacatattcatgcctgtagaagacattttcaaaggaacagtggtgggagccttgaaacaattcacagcaagagctttccatagtggttaattattttatgttagatattgttgcttgctgctgtgagttactctagcctgaagttaagaacccaaaagaactgggagtagaataactttgtcaacttaaattatttaaatagatgttgactgaagaagcaaaagagatgaacattatctaatttttctttaccatgtgggtatagtttatctttttggctacgagagtaactatggcgattgttttaagataagtgattacctattttgagataattcaaagacaattttctgctgctagatagttccttgcagtttgttggtgctgcacagtgtcattgaagttagattaaagtttaatcatatcatctttggtcttgagcttcattataatctgccttgacagtggaaaagatgctgaatatagacactccttggacatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="22923" stop="24035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23223" g_stop="23735" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E265959" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23223" e_stop="23735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAAGAACATATTCATGCCTGTAGAAGACATTTTCAAAGGAACATTGGTGGGAGCCTTGAAACAATTCACAGCAGGAGCTTTCCATAGTGGTTAATTATTTTATGTTAGATATTGTTGCTTGCTGCTGTGAGTTACTCTAGCCTGAAGTTAAGAACCCAAAAGAACTGGGAGTAGAATAACTTTGTCAACTTAAATTATTTAAATAGATGTTGACTGAAGAAGCAAAAGAGATGAACATTATCTAATTTTTCTTTACCATGTGGGTATAGTTTTTCTTTTTGGCTACGAGAGTAGCTATGGCGATTGTTTTAGGATAAGTGATTACCTATTTTGAGATAATTCAAAGACAATTTTCTGCTGCTAGATAGTTCCTTGCAGTTTGTTGGTGCTGCACAGTGTAATTGAAGTTAGATTAAAGTTTAATCATATCATCTTTGTTCTTGAGCTTCATTATAATCTGCCTTGACAGTGGAAAGGATGCTGAAGATAGACACTCCTTGGACATTTAC</genome_strand>
        <mrna_strand>TTTGAAAGAACATATTCATGCCTGTAGAAGACATTTTCAAAGGAACAGTGGTGGGAGCCTTGAAACAATTCACAGCAAGAGCTTTCCATAGTGGTTAATTATTTTATGTTAGATATTGTTGCTTGCTGCTGTGAGTTACTCTAGCCTGAAGTTAAGAACCCAAAAGAACTGGGAGTAGAATAACTTTGTCAACTTAAATTATTTAAATAGATGTTGACTGAAGAAGCAAAAGAGATGAACATTATCTAATTTTTCTTTACCATGTGGGTATAGTTTATCTTTTTGGCTACGAGAGTAACTATGGCGATTGTTTTAAGATAAGTGATTACCTATTTTGAGATAATTCAAAGACAATTTTCTGCTGCTAGATAGTTCCTTGCAGTTTGTTGGTGCTGCACAGTGTCATTGAAGTTAGATTAAAGTTTAATCATATCATCTTTGGTCTTGAGCTTCATTATAATCTGCCTTGACAGTGGAAAAGATGCTGAATATAGACACTCCTTGGACATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547929" ref_strand="+" ref_description="SGN-E547929 [TUS-56-G5](-)">
      <seq>cccataaaggaacgactggatattaaggtggcattatttaattcatttggatttggtggccacaactcatcaattttatttgctccttacaagtagatttctcaaacaatgttgatgcatttgacagatacaaggaatatttggaaggatccttgattcccagagttacttgaaggacacttgtagaagaggcctcagtctcgaagaatttgttttcaggaagatagtttaatgacgggggtacttccctttgatatacagaatttgattgttggagaaagaagatgccgaagcaaagaatggggggaggatcaagttttttttatctccattttttttagctaaattatacttacttaactaaattgttttttttacacatagcagcaaatgacccttaggtgtttgcatatgggccttaatgctagtgtactagtttctttgtataccatatatattttgcaaattggactttttgatatttgaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24184" stop="27521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24484" g_stop="24617" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24618" i_stop="26860" i_length="2243">
            <donor d_prob="0.883" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26861" g_stop="27212" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="486" r_length="352" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="528"/>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E547929" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24484" e_stop="24617"/>
          <exon e_start="26861" e_stop="27212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATAAAGGAACGACTGGATATTAAGGTGGCATTATCTAATTCATTTGGATTTGGTGGCCACAACTCATCAATCTTATTTGCTCCTTACAAGTAGATCTCTCAAACAATGTTGATGCATCTGACAGATACAAGGTATGTAGGTTCATGCTTGTTTGTATTGAGGAAGCGAGGAAGATTAAGAAAGCCATGTATTTTGGAGTGTACACTTAGCAAATCTAGTTAGTTGTTTGGTAGGGAACAAAATGGGAGAAGAAGGATCACTGTTTTAACATGTAACAACCTAGTTAGTTTGTTTCGGCAAAATAGAACTTCATTTCTTCTAGACTATGGGACCTGCTTCCTACTAAACCCCATATGCAGCAGTGATCAAAGTAAATTTGAGAATCTTGAGTCTGGAATATGACTATCTTATTCTTCGATTTTATTATTCGTTGTCTTTTTTGCTACAATTATCGTATGATTTGTTGTTGTTACTTTTCTCGTCTATGTTATTTTGATCGTGGCTTCTTCACTACTGCATTCCTTTTCAAAACTGCTTTCATATGCTTTAGTTTACTTGAGCCGAGGGTTTGTCGGAAACAACCTCTCGACGGTCTGCATACACACCACCCTACCCAGAACCCACTTGTGGGATTACATCGGGTATTGTTGCTGTCAAGTCTGGAAAAAGAGTGTGGTCGGAGACTATACTTTCTAGGCTATGCCAAGCTCTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCCAAGCTTGCTACTACTTGAACAAGTGGATTCAATATTTTGGTACATGAACACCTATTTGGCAAAAAGAGAAGTGTTAGCAATGACTAAAGGTTATATCAAACTGTTTGGTAAACAGATTACCTTTTTACGATAAAAGGGAATCACCTGAGCTTGGCAATTTAGCGAGAGTTGATAGCTTTTCTATTTCAAAATGTTGCTAGCTCCTTGTAGCATTGATTCACATCTGTAATGGAAACCAAATGAAACAAGCCTCCTTTCCCCCCACTTCTTTTTCTCTTACAGTTACTCCCTTTATATTCATTGAACATATGTTTTCATTTGCTTTATTTTAGGAATATTTGGAAGGATCCTTGATTCCCAGAGTTACTTGAAGGACACTCGTAGAAGAGGCCTCAGTCTCGAAGAATTTGTCTTCAGGAAGATAGTCTAATGACGGTGGTACTTCCCTCTGATATACAGAATTTGATTGTTGGAGAAAGAAGATGCCGAAGCAAAGAATGGGGGGAGGATCAAGTTTTTTTTATCTCCATTTCTCTTAGCTAAATTATACTTACTTAACTAAATTGTTTCTCTTACACATAGCAGCAAATGACCCTTAGGTGTTTGCATATGGGCCTTAATGCTAGTGTACTAGTTTCTTTGTATACCATATATATTCTGCAAATTGGACTTCTTGATATTTGA</genome_strand>
        <mrna_strand>CCCATAAAGGAACGACTGGATATTAAGGTGGCATTATTTAATTCATTTGGATTTGGTGGCCACAACTCATCAATTTTATTTGCTCCTTACAAGTAGATTTCTCAAACAATGTTGATGCATTTGACAGATACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTGGAAGGATCCTTGATTCCCAGAGTTACTTGAAGGACACTTGTAGAAGAGGCCTCAGTCTCGAAGAATTTGTTTTCAGGAAGATAGTTTAATGACGGGGGTACTTCCCTTTGATATACAGAATTTGATTGTTGGAGAAAGAAGATGCCGAAGCAAAGAATGGGGGGAGGATCAAGTTTTTTTTATCTCCATTTTTTTTAGCTAAATTATACTTACTTAACTAAATTGTTTTTTTTACACATAGCAGCAAATGACCCTTAGGTGTTTGCATATGGGCCTTAATGCTAGTGTACTAGTTTCTTTGTATACCATATATATTTTGCAAATTGGACTTTTTGATATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215508" ref_strand="+" ref_description="SGN-E215508 [cLEL-20-I20](-)">
      <seq>ccctctgatatacagaatttgattgttggagaaagaagatgccgaagcaaagaatggggggaggatcaagttttttttatctccatttctcttagctaaattatacttacttaactaaattgtttctcttacacatagcagcaaatgacccttaggtgtttgcatatgggccttaatgctagtgtactagtttctttgtataccatatatattctgcaaattggacttcttgatatttgaatgaacaaactctgaaggacttcctcaaaaaaaaaccccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="26673" stop="27547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26973" g_stop="27255" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="283" polyA_stop="293"/>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E215508" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26973" e_stop="27255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTGATATACAGAATTTGATTGTTGGAGAAAGAAGATGCCGAAGCAAAGAATGGGGGGAGGATCAAGTTTTTTTTATCTCCATTTCTCTTAGCTAAATTATACTTACTTAACTAAATTGTTTCTCTTACACATAGCAGCAAATGACCCTTAGGTGTTTGCATATGGGCCTTAATGCTAGTGTACTAGTTTCTTTGTATACCATATATATTCTGCAAATTGGACTTCTTGATATTTGAATGAACAAACTCTGAAGGACTTCCTCAAAACGAAAAAAATAAG</genome_strand>
        <mrna_strand>CCCTCTGATATACAGAATTTGATTGTTGGAGAAAGAAGATGCCGAAGCAAAGAATGGGGGGAGGATCAAGTTTTTTTTATCTCCATTTCTCTTAGCTAAATTATACTTACTTAACTAAATTGTTTCTCTTACACATAGCAGCAAATGACCCTTAGGTGTTTGCATATGGGCCTTAATGCTAGTGTACTAGTTTCTTTGTATACCATATATATTCTGCAAATTGGACTTCTTGATATTTGAATGAACAAACTCTGAAGGACTTCCTCAAAA-AAAAACCCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578374" ref_strand="-" ref_description="SGN-E578374 [LE12DA11]">
      <seq>atcagaagatgaagcagaaatagattctgaaggccgtttgatatttcacgatggagataagaagcaaaaaagagttaagccagcttctgatgatttagatgtaagaagcaaagcagggagtcgcttttcagagagctcaaggaagactcagaaacggaggagaacatctgaatcaggatgggcttacactggaacagagtatgcgagcaagaaggcaggtggtgatgtcaagaagaaagacagacttgagccgtatgcctactggccccttgaccgcaagatgatgagccggaggcctgaacatcgggcagcagcacgaaaaggaatgtcaagcattgtgaagctaacaaagaagcttgaaggcaagagtgcatcatctgtgctgtccgtgaagagatctaagactaaaaagaaaaatagatcataaatagaggatgaagtcgaagtctgatttgatgatactacgtcatgagggagagctctgtccagaggcttggtagtttttgtgccatagtttgtagttggggattctggatatccagtacacccatgttttctttcgtgtcctttttcatttaattcatccatatatatcaccttcaacaggtgatttgttttttttgatagggttgtatgtaggaaatagagtgtacgtatgcaaatgcattcaatacaagctacttgaattggtgagttattggtaatatataacattattgcaatatgcaatgacttaaaagtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="49993" stop="13503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49693" g_stop="48953" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48952" i_stop="47273" i_length="1680">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.700" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47272" g_stop="47250" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="764" r_length="23" r_score="0.739"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E578374" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578374" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49693" e_stop="48953"/>
          <exon e_start="47272" e_stop="47250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAGAAAGACAGACTTGAGCCGTATGCCTACTGGCCCCTTGACCGCAAGATGATGAGCCGGAGGCCTGAACATCGGGCAGCAGCACGAAAAGGAATGTCAAGCATTGTGAAGCTAACAAAGAAGCTTGAAGGCAAGAGTGCATCATCTGTGCTGTCCGTGAAGAGATCTAAGACTAAAAAGAAAAATAGATCATAAATAGAGGATGAAGTCGAAGTCTGATTTGATGATACTACGTCATGAGGGAGAGCTCTGTCCAGAGGCTTGGTAGTTTTTGTGCCATAGTTTGTAGTTGGGGATTCTGGATATCCAGTACACCCATGTTTTCTTTCGTGTCCTTTTTCATTTAATTCATCCATATATATCACCTTCAACAGGTGATTTGTTTTTTTTGATAGGGTTGTATGTAGGAAATAGAGTGTACGTATGCAAATGCATTCAATACAAGCTACTTGAATTGGTGAGTTATTGGTAATATATAACATTATTGCAATATGCAATGACTTAAAAGTATATCCGAGTCTTCTGTATTATACCAGTAAATTTTTTGATTGTATTTGATATTTTGCAGTTTCAATCAAGAGGGTTTCTTTTTACACCTTGTTTGGATGGTTGTTATCCATTGTATTGTATTATTAGTTTAAACGGAAAAGGGTTTAAAATACCTTCGTAATATTGAAAATGATACAAAACTATCCTTCATCTATCTATTGGCTCCAAAATATCTTTTTTATCTACCTATTGGCTCAAAAATAGACATCCACCTCTGGGTTCAAAATTAACCACTTATTTTGACGGTTTTAAATTTAAACCATTTGAATATTTTTTTAAAATGCTTGGTGCTCAACTATTGGATATAATTTAATTTATTAATATCATTTATAAATCAACTCAATACTCACCCATTACTAATTAAACCCTTCCCAATTAATAAACCAATTCTAATATCAAAATCACCCTAAACCCTATTGAAACACGACGAAATTACAGATTCTTGAAAATGACATTCAAAATTAGTCGAGTTCGAATTGAAACTCAATTAAATTTAGGTTGAGACTTCTTATTTAGAAGGACACTTTTAATAGGATTCTCTTTCAAGCTTAAATTAGAATTTTATAACTAAAAGTAAAGAAGTAGTACATTCCGAATCAATTAATGCGCTTTTTTAAATATTACTTTATATATATTTATTATTTGTTTTAAATATTTAAGCTTTAATATATTCTTTTTTAAAAAGTTATCTATTAAGCAACATCACATAATTTAGACGAATGAATAATTAAGATGAACATAGTCAAACTTTTAAGTTTATAAGTTTTTTTAGTTAGACAGTGAATTATAATATATTTTGATTGAAGACTTGAATGTATGATAATCTACTTCTATAGACATTTTCGTCTCAAATTTTTATAAACAATCATTGGCAGTAGCTTTTCCGTAGTTGCATTAGTAATGGGGCTTATCGGAAATTTTGACCAAAATGAGCTATTTTAAAAAACAATTTACCTAATTAATACGTTTTTAATTTTTTTTTTACAAAAATAGTATAAACGTACTTTATGGTAAGGTTTTAGGCTTTATTTGATTTTAAAAAAAATAACACCGTTAACTTAATAAACGTTATTGGCGGTAACGTTTTTATATTAAAACGTGACAACACCATATCCTCACTAAACGACGTCACTTTGTTATTAACTTAAATGTTATGTGGCTGCCAAACCCTTTCACCCCTTTCACCCTTTCAGCCCTTTCTCTGGAAAAAAAAAATTGGCAGCCGCCATTGTCACTTTCTAAGCCTCCATATTCCATTTTCGATCGGTAATTTGTGGACGAAGAGGAGGCGTGAAAGAACAAAAACACAGGAAGACAATGAATGGATCAAAACCTCATTTTGTGGATAAACGGTAGCAGTAGTTTTTCCAAATCAATTTTGGGGAAATCTTGTTATATAGAGTTTCACGATAAATTGCGGCTATCAATCTTCTGGAAAGCTTGGAATCAAGTTAATTTCCTGTGTTAGAGCCTTGAGGTATGTTTTTTTCCCTTACAAACTAGTAGATGGAATGCTTGAATTTTAGAATTTCTACCTTCTCGTATTTATATCGTTTTGATTATATGGAATAATCACTCAAGAAATTCTAATATGCATGTTCTGTTTTTATTTTGAATTCATGCATCTTGTTGATGCAAAGAGAAACAATGAAAAGAAAAACAA</genome_strand>
        <mrna_strand>ATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATATTTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAGAAAGACAGACTTGAGCCGTATGCCTACTGGCCCCTTGACCGCAAGATGATGAGCCGGAGGCCTGAACATCGGGCAGCAGCACGAAAAGGAATGTCAAGCATTGTGAAGCTAACAAAGAAGCTTGAAGGCAAGAGTGCATCATCTGTGCTGTCCGTGAAGAGATCTAAGACTAAAAAGAAAAATAGATCATAAATAGAGGATGAAGTCGAAGTCTGATTTGATGATACTACGTCATGAGGGAGAGCTCTGTCCAGAGGCTTGGTAGTTTTTGTGCCATAGTTTGTAGTTGGGGATTCTGGATATCCAGTACACCCATGTTTTCTTTCGTGTCCTTTTTCATTTAATTCATCCATATATATCACCTTCAACAGGTGATTTGTTTTTTTTGATAGGGTTGTATGTAGGAAATAGAGTGTACGTATGCAAATGCATTCAATACAAGCTACTTGAATTGGTGAGTTATTGGTAATATATAACATTATTGCAATATGCAATGACTTAAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344046" ref_strand="+" ref_description="SGN-E344046 [cTOF-12-L5]">
      <seq>gaagatctgtttgatcaattagatgatgagccacttgacttacttgaccagaagaagaccaggtcagctcttagagcatctggcaatctcaagaggaagtctgaatcagaagatgaagcagaaatagattctgaaggccgtttgattattcacgatggagataagaagcaaaaaagagttaagccagcttctgatgatttagatgtaagaagcaaagcagggagtcgcttttcagagagctcaaggaagactcagaaacggaggagaacatctgaatcaggatgggcttacactggaacagagtatgcgagcaagaaggcaggtggtgatgtcaagaagaaaacacggaaagcagccaagagtttgcaggaagatctgtttgatcaattagatgatgagccggaggcctgaacatcgggcagcagcacgaaaaggaatgtcaagcattgtgaagctaacaaagaagcttgaaggcaagagtgcatcatctgtgctgtccgtgaagagatctaagactaaaaagaaaaatagatcataaatagaggatgaagtcgaagtctgatttgatgatactacgtcatgagggagagctctgtccagaggcttggtagtttttgtgccatagtttgtagttggggattctggatatccagtacacccatgttttctttcgtgtcctttttcatttaattcatccatatatatcaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="50097" stop="48793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49797" g_stop="49093" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E344046" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49797" e_stop="49093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGCTCTTAGAGCATCTGGCAATCTCAAGAGGAAGTCTGAATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAG-AAAGACAGACTTGAGCC----GTATGC-CTACTGGCCCCTTGA-CCGCAAGATGATGAGCCGGAGGCCTGAACATCGGGCAGCAGCACGAAAAGGAATGTCAAGCATTGTGAAGCTAACAAAGAAGCTTGAAGGCAAGAGTGCATCATCTGTGCTGTCCGTGAAGAGATCTAAGACTAAAAAGAAAAATAGATCATAAATAGAGGATGAAGTCGAAGTCTGATTTGATGATACTACGTCATGAGGGAGAGCTCTGTCCAGAGGCTTGGTAGTTTTTGTGCCATAGTTTGTAGTTGGGGATTCTGGATATCCAGTACACCCATGTTTTCTTTCGTGTCCTTTTTCATTTAATTCATCCATATATATCACCTTC</genome_strand>
        <mrna_strand>GAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGCTCTTAGAGCATCTGGCAATCTCAAGAGGAAGTCTGAATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCGGAGGCCTGAACATCGGGCAGCAGCACGAAAAGGAATGTCAAGCATTGTGAAGCTAACAAAGAAGCTTGAAGGCAAGAGTGCATCATCTGTGCTGTCCGTGAAGAGATCTAAGACTAAAAAGAAAAATAGATCATAAATAGAGGATGAAGTCGAAGTCTGATTTGATGATACTACGTCATGAGGGAGAGCTCTGTCCAGAGGCTTGGTAGTTTTTGTGCCATAGTTTGTAGTTGGGGATTCTGGATATCCAGTACACCCATGTTTTCTTTCGTGTCCTTTTTCATTTAATTCATCCATATATATCACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378162" ref_strand="+" ref_description="SGN-E378162 [TUS-21-A4]">
      <seq>acatttaaggaacatggtataggcccttcttggttggcaaaatagtaccaagaaccatttcaaagccaaggttaaactgcttattgaaatgcttatcaagaagtgtggattggatgctgtaaaagaggtgatgcctgaagagcacatgaaactccttactaacataagaaagatcaaagagcgaagagagaggagcctcgcctcgaattctgaggaaagcagatcccgtatgacaaaagcaacgacatcaaggctaagcagatggaatcatacaaaaatattttctgagtttgatgatggagaatctgagaacagtgatgcagaatatatggacacgaaaactactgctggtcgtaggagcaaggctacattagtatcagactccaaagcatctttattacggtccaagaaaacacggaaagcagccaagagtttgcaggaagatctgtttgatcaattagatgatgagccacttgacttacttgaccagaagaagaccaggtcagctcttagagcatctggcaatctcaagaggaagtctgaatcagaagatgaagcagaaatagattctgaaggccgtttgattattcacgatggagataagaagcaaaaaagagttaagccagcttctgatgatttagatgtaagaagcaaagcagggagtcgcttttcagagagctcaaggaagactcagaaacggaggagaacatctgaatcaggatgggcttacactggaacagagtatgcgagcaagaaggcaggtggtgatgtcaagaagaaagacagacttgagccgtatgcctactgnccccttgacccgcagatgatgagccggaagcctgaacatcgggcagcagcacgaaaaggatgtcaagcattgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="52074" stop="49053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51774" g_stop="51705" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51704" i_stop="51532" i_length="173">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51531" g_stop="51430" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="172" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51429" i_stop="51340" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51260" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="252" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51259" i_stop="50125" i_length="1135">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50124" g_stop="49975" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="402" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49974" i_stop="49835" i_length="140">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49834" g_stop="49353" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="883" r_length="481" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E378162" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51774" e_stop="51705"/>
          <exon e_start="51531" e_stop="51430"/>
          <exon e_start="51339" e_stop="51260"/>
          <exon e_start="50124" e_stop="49975"/>
          <exon e_start="49834" e_stop="49353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAGGTTTTTGCTTTTCTCCTAAATTCTAAACTTGTGGTTTGAGTTGGTTTTGGTTCCTGTATGCAATTACTCAATTTTCAGTGGTCTTCTCTAATTTTGTTTGTGGAATTTCTTTCCTGTTATGAAAAGATTAGATGTTGATTGAAAGGTGGCTGGGTGCATGTTATGTTTGACAGGTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAGGTTAGTTATGATCTGGACTAGAACCTGTGAAAATGCTAGTGTGATATTAAATGTTCAGATGAATTATTTATTCTTCTGATGAAAATGTAGATCAAAGAGCGAAGAGAGAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAGATCCCGTATGACAAAAGCAACGACATCAAGGTTGGTTTCCTTTCCTCCATACCTACATACTGAAGTTAAGAAGAATATGCACAAGAATATTGGTAGGGATGGTAATGGGTCGGGGCATATGTGTGGCGGGGTTGATTTAAGGCTATGTGGGATAGGTTGAATTTTTCTTTTTAAAACTATGCGGGGCGGGGTGGGTTGCAGATATTTGTGATTTTATGCGGGTTCATAGTTAATTTTAACTTTTTAAATGTAGAGTGATAGAACATTATTTATTAAGACGATTTCTTTAAAGCTACTAAATTATTCAAGATAGTTTATGAATATGGTTCAATAAAAAATAATACAATTTGTTACATTATCTGTTAAATTAACACAACTTTTTAAGTCATTATTACGTTATGAACTTCTAAAAACATTCGGAGCAAAATGATCATGCATGAAAGAAGAAAGTAACTATTTTAGGAATTAACTTGACGCTTTTGCCAAGTTACCCAATCTTAAAGATAAATCAAAGACCATTCAAGGCTATGAATAACAAATGAAAGAGCAACTGTAAATTGATGGAGGTAAATGATAAGAGAACAAAACTGAATTACAAGTGTAGTTTGTGCAGAATCATATTCCATCAGAATCCTACGAAGACTAATGCTTAGTGCCCAAATATTTTTTTACGTCATTATCTATTAAATTAATACAGCTTAATTAAAAAATGAAATTTATTTTTATAAATTTCTAGAAAAAATATTAAAATAATTATGCGGGGCGGGTTGAAAATGAAAAGGGTTGTTATGCAGAGCGGAGCGAGGTGGATTAAAAATTTTGCGGGTTAAACTCAACCCACCCCATTGTCATCCCTAAATGTTGGATGAACACAAGAATATTGGATGCCTAATGCATGGTGAAGCGACTAAAACATATTGGAGTATTTTATGTACCTTTGCTGGGTTGGAACAATTTTTTATCATGAAACAAATATTTGCCTATTTTTGACCGTCTCTGTGTTAATGATGAATCTTCAGATCATTCCCAGTTAAGATGGACAATGACTCTTTGGTCTTCAGTCTTTTGTAGTTTGTATCACATGGATAATAAGTCATTTCAATGCCTTGGTATCTTGTCAACTAGTTATAGTACCTGTGGTATTAACTTTTCCATCCTGTTACAGGCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTTGATGATGGAGAATCTGAGAACAGTGATGCAGAATATATGGACACGAAAACTACTGCTGGTCGTAGGAGCAAGGCTACATTAGTATCAGACTCCAAAGCATCTTTATTACGGTGAGTTTGAATGTTTTAAGATGTTATGTCCTACAGTACGTAGGAAGTCAAACGTAATTTAGTTTAAAGGAAATGAATGATGCTTTGTAGCTTTAAACTATTTCACATGTAAGATGAATGGGTGTATGTCATATTTCCAGGTCCAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGCTCTTAGAGCATCTGGCAATCTCAAGAGGAAGTCTGAATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAGAAAGACAGACTTGAGCCGTATGCCTACTGGCCCCTTGACCGCAAGATGATGAGCCGGAGGCCTGAACATCGGGCAGCAGCACGAAAAGGAATGTCAAGCATTGTGA</genome_strand>
        <mrna_strand>ACATTTAAGGAACATGGTATAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAG.............................................................................................................................................................................GTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAG..........................................................................................ATCAAAGAGCGAAGAGAGAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAGATCCCGTATGACAAAAGCAACGACATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTTGATGATGGAGAATCTGAGAACAGTGATGCAGAATATATGGACACGAAAACTACTGCTGGTCGTAGGAGCAAGGCTACATTAGTATCAGACTCCAAAGCATCTTTATTACG............................................................................................................................................GTCCAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGCTCTTAGAGCATCTGGCAATCTCAAGAGGAAGTCTGAATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAGAAAGACAGACTTGAGCCGTATGCCTACTGNCCCCTTGACCCGCAGATGATGAGCCGGAAGCCTGAACATCGGGCAGCAGCACGAAAAGG-ATGTCAAGCATTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377384" ref_strand="+" ref_description="SGN-E377384 [TUS-21-A4]">
      <seq>acatttaaggaacatggtacaggcccttcttggttggcaaaatagtaccaagaaccatttcaaagccaaggttaaactgcttattgaaatgcttatcaagaagtgtggattggatgctgtaaaagaggtgatgcctgaagagcacatgaaactccttactaacataagaaagatcaaagagcgaagagagaggagcctcgcctcgaattctgaggaaagcagatcccgtatgacaaaagcaacgacatcaaggctaagcagatggaatcatacaaaaatattttctgagtttgatgatggagaatctgagaacagtgatgcagaatatatggacacgaaaactactgctggtcgtaggagcaaggctacattagtatcagactccaaagcatctttattacggtccaagaaaacacggaaagcagccaagagtttgcaggaagatctgtttgatcaattagatgatgagccacttgacttacttgaccagaagaagaccaggtcagctcttagagcatctggcaatctcaagaggaagtctgaatcaaaagatgaagcagaaatagattctgaaggccgtttgattattcacgatggagataaaaagcaaaaaagagttaaacccgcttctgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="52074" stop="49300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51774" g_stop="51705" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51704" i_stop="51532" i_length="173">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51531" g_stop="51430" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="172" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51429" i_stop="51340" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51260" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="252" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51259" i_stop="50125" i_length="1135">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50124" g_stop="49975" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="402" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49974" i_stop="49835" i_length="140">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49834" g_stop="49600" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="637" r_length="235" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E377384" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51774" e_stop="51705"/>
          <exon e_start="51531" e_stop="51430"/>
          <exon e_start="51339" e_stop="51260"/>
          <exon e_start="50124" e_stop="49975"/>
          <exon e_start="49834" e_stop="49600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAGGTTTTTGCTTTTCTCCTAAATTCTAAACTTGTGGTTTGAGTTGGTTTTGGTTCCTGTATGCAATTACTCAATTTTCAGTGGTCTTCTCTAATTTTGTTTGTGGAATTTCTTTCCTGTTATGAAAAGATTAGATGTTGATTGAAAGGTGGCTGGGTGCATGTTATGTTTGACAGGTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAGGTTAGTTATGATCTGGACTAGAACCTGTGAAAATGCTAGTGTGATATTAAATGTTCAGATGAATTATTTATTCTTCTGATGAAAATGTAGATCAAAGAGCGAAGAGAGAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAGATCCCGTATGACAAAAGCAACGACATCAAGGTTGGTTTCCTTTCCTCCATACCTACATACTGAAGTTAAGAAGAATATGCACAAGAATATTGGTAGGGATGGTAATGGGTCGGGGCATATGTGTGGCGGGGTTGATTTAAGGCTATGTGGGATAGGTTGAATTTTTCTTTTTAAAACTATGCGGGGCGGGGTGGGTTGCAGATATTTGTGATTTTATGCGGGTTCATAGTTAATTTTAACTTTTTAAATGTAGAGTGATAGAACATTATTTATTAAGACGATTTCTTTAAAGCTACTAAATTATTCAAGATAGTTTATGAATATGGTTCAATAAAAAATAATACAATTTGTTACATTATCTGTTAAATTAACACAACTTTTTAAGTCATTATTACGTTATGAACTTCTAAAAACATTCGGAGCAAAATGATCATGCATGAAAGAAGAAAGTAACTATTTTAGGAATTAACTTGACGCTTTTGCCAAGTTACCCAATCTTAAAGATAAATCAAAGACCATTCAAGGCTATGAATAACAAATGAAAGAGCAACTGTAAATTGATGGAGGTAAATGATAAGAGAACAAAACTGAATTACAAGTGTAGTTTGTGCAGAATCATATTCCATCAGAATCCTACGAAGACTAATGCTTAGTGCCCAAATATTTTTTTACGTCATTATCTATTAAATTAATACAGCTTAATTAAAAAATGAAATTTATTTTTATAAATTTCTAGAAAAAATATTAAAATAATTATGCGGGGCGGGTTGAAAATGAAAAGGGTTGTTATGCAGAGCGGAGCGAGGTGGATTAAAAATTTTGCGGGTTAAACTCAACCCACCCCATTGTCATCCCTAAATGTTGGATGAACACAAGAATATTGGATGCCTAATGCATGGTGAAGCGACTAAAACATATTGGAGTATTTTATGTACCTTTGCTGGGTTGGAACAATTTTTTATCATGAAACAAATATTTGCCTATTTTTGACCGTCTCTGTGTTAATGATGAATCTTCAGATCATTCCCAGTTAAGATGGACAATGACTCTTTGGTCTTCAGTCTTTTGTAGTTTGTATCACATGGATAATAAGTCATTTCAATGCCTTGGTATCTTGTCAACTAGTTATAGTACCTGTGGTATTAACTTTTCCATCCTGTTACAGGCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTTGATGATGGAGAATCTGAGAACAGTGATGCAGAATATATGGACACGAAAACTACTGCTGGTCGTAGGAGCAAGGCTACATTAGTATCAGACTCCAAAGCATCTTTATTACGGTGAGTTTGAATGTTTTAAGATGTTATGTCCTACAGTACGTAGGAAGTCAAACGTAATTTAGTTTAAAGGAAATGAATGATGCTTTGTAGCTTTAAACTATTTCACATGTAAGATGAATGGGTGTATGTCATATTTCCAGGTCCAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGCTCTTAGAGCATCTGGCAATCTCAAGAGGAAGTCTGAATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGAT</genome_strand>
        <mrna_strand>ACATTTAAGGAACATGGTACAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAG.............................................................................................................................................................................GTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAG..........................................................................................ATCAAAGAGCGAAGAGAGAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAGATCCCGTATGACAAAAGCAACGACATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTTGATGATGGAGAATCTGAGAACAGTGATGCAGAATATATGGACACGAAAACTACTGCTGGTCGTAGGAGCAAGGCTACATTAGTATCAGACTCCAAAGCATCTTTATTACG............................................................................................................................................GTCCAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGCTCTTAGAGCATCTGGCAATCTCAAGAGGAAGTCTGAATCAAAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAAAAGCAAAAAAGAGTTAAACCCGCTTCTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231897" ref_strand="+" ref_description="SGN-E231897 [cLED-7-L11]">
      <seq>acatttaaggaacatggtagaggcccttcttggttggcaaaatagtaccaagaaccatttcaaagccaaggttaaactgcttattgaaatgcttatcaagaagtgtggattggatgctgtaaaagaggtgatgcctgaagagcacatgaaactccttactaacataagaaagatcaaagagcgaagagagaggagcctcgcctcgaattctgaggaaagcagatcccgtatgacaaaagcaacgacatcaaggctaagcagatggaatcatacaaaaatattttctgagtttgatgatggagaatctgagaacagtgatgcagaatatatggacacgaaaactactgctggtcgtaggagcaaggctacattagtatcagactccaaagcatctttattacggtccaagaaaacacggaaagcagccaagagtttgcaggaagatctgtttgatcaattagatgatgagccacttgacttacttgaccagaagaagaccaggtcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="52074" stop="49430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51774" g_stop="51705" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51704" i_stop="51532" i_length="173">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51531" g_stop="51430" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="172" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51429" i_stop="51340" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51339" g_stop="51260" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="252" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51259" i_stop="50125" i_length="1135">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50124" g_stop="49975" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="402" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49974" i_stop="49835" i_length="140">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49834" g_stop="49730" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="507" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E231897" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51774" e_stop="51705"/>
          <exon e_start="51531" e_stop="51430"/>
          <exon e_start="51339" e_stop="51260"/>
          <exon e_start="50124" e_stop="49975"/>
          <exon e_start="49834" e_stop="49730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAGGTTTTTGCTTTTCTCCTAAATTCTAAACTTGTGGTTTGAGTTGGTTTTGGTTCCTGTATGCAATTACTCAATTTTCAGTGGTCTTCTCTAATTTTGTTTGTGGAATTTCTTTCCTGTTATGAAAAGATTAGATGTTGATTGAAAGGTGGCTGGGTGCATGTTATGTTTGACAGGTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAGGTTAGTTATGATCTGGACTAGAACCTGTGAAAATGCTAGTGTGATATTAAATGTTCAGATGAATTATTTATTCTTCTGATGAAAATGTAGATCAAAGAGCGAAGAGAGAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAGATCCCGTATGACAAAAGCAACGACATCAAGGTTGGTTTCCTTTCCTCCATACCTACATACTGAAGTTAAGAAGAATATGCACAAGAATATTGGTAGGGATGGTAATGGGTCGGGGCATATGTGTGGCGGGGTTGATTTAAGGCTATGTGGGATAGGTTGAATTTTTCTTTTTAAAACTATGCGGGGCGGGGTGGGTTGCAGATATTTGTGATTTTATGCGGGTTCATAGTTAATTTTAACTTTTTAAATGTAGAGTGATAGAACATTATTTATTAAGACGATTTCTTTAAAGCTACTAAATTATTCAAGATAGTTTATGAATATGGTTCAATAAAAAATAATACAATTTGTTACATTATCTGTTAAATTAACACAACTTTTTAAGTCATTATTACGTTATGAACTTCTAAAAACATTCGGAGCAAAATGATCATGCATGAAAGAAGAAAGTAACTATTTTAGGAATTAACTTGACGCTTTTGCCAAGTTACCCAATCTTAAAGATAAATCAAAGACCATTCAAGGCTATGAATAACAAATGAAAGAGCAACTGTAAATTGATGGAGGTAAATGATAAGAGAACAAAACTGAATTACAAGTGTAGTTTGTGCAGAATCATATTCCATCAGAATCCTACGAAGACTAATGCTTAGTGCCCAAATATTTTTTTACGTCATTATCTATTAAATTAATACAGCTTAATTAAAAAATGAAATTTATTTTTATAAATTTCTAGAAAAAATATTAAAATAATTATGCGGGGCGGGTTGAAAATGAAAAGGGTTGTTATGCAGAGCGGAGCGAGGTGGATTAAAAATTTTGCGGGTTAAACTCAACCCACCCCATTGTCATCCCTAAATGTTGGATGAACACAAGAATATTGGATGCCTAATGCATGGTGAAGCGACTAAAACATATTGGAGTATTTTATGTACCTTTGCTGGGTTGGAACAATTTTTTATCATGAAACAAATATTTGCCTATTTTTGACCGTCTCTGTGTTAATGATGAATCTTCAGATCATTCCCAGTTAAGATGGACAATGACTCTTTGGTCTTCAGTCTTTTGTAGTTTGTATCACATGGATAATAAGTCATTTCAATGCCTTGGTATCTTGTCAACTAGTTATAGTACCTGTGGTATTAACTTTTCCATCCTGTTACAGGCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTTGATGATGGAGAATCTGAGAACAGTGATGCAGAATATATGGACACGAAAACTACTGCTGGTCGTAGGAGCAAGGCTACATTAGTATCAGACTCCAAAGCATCTTTATTACGGTGAGTTTGAATGTTTTAAGATGTTATGTCCTACAGTACGTAGGAAGTCAAACGTAATTTAGTTTAAAGGAAATGAATGATGCTTTGTAGCTTTAAACTATTTCACATGTAAGATGAATGGGTGTATGTCATATTTCCAGGTCCAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGC</genome_strand>
        <mrna_strand>ACATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAG.............................................................................................................................................................................GTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAG..........................................................................................ATCAAAGAGCGAAGAGAGAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAGATCCCGTATGACAAAAGCAACGACATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTTGATGATGGAGAATCTGAGAACAGTGATGCAGAATATATGGACACGAAAACTACTGCTGGTCGTAGGAGCAAGGCTACATTAGTATCAGACTCCAAAGCATCTTTATTACG............................................................................................................................................GTCCAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416817" ref_strand="+" ref_description="SGN-E416817 [STM-23-N21]">
      <seq>attttgcttgcactcaaagaggctaacaagaaaacaaggaaccgagcgtatgaagattcttgtcaagattggccatgcttgtgcagatgaggacaaaggtggcagaaaggagaacctgcatcagttttttaatatgattgctgggggtcttgccggggaaacacctcatatgatcagtgcagcggttaaaggcctagctcgccttgcttatgaattttcagaccttgtttctgctgcttacagtgtcctaccatcaacatttcttctccttaagagagagaacaaagaaataattaaggctaatttagggctgttgaaggtactggtcacaaaatcgactgccgatggattgcaagcacatttaaagaacatggtagaggcccttcttggttggcaaaatagtaccaagaaccatttcaaagccaaggttaagctgcttattgaaatgcttatcaagaagtgtggattggatgctgtaaaagaggtgatgcctgaagggcatatgaaactccttactaacataagaaagatcaaggagcgaagagataggagcctcgcctcgaattctgaggaaagcaagtcccgtatgacaaaagcaacaacatcaaggctaagcagatggaatcatacaaaaatattttctgagttcgatgatggagaatctgagaatattgatgcagaatatatggacacgaaaactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="53595" stop="49731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53295" g_stop="53275" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53274" i_stop="52288" i_length="987">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52287" g_stop="52174" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="136" r_length="115" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52173" i_stop="52083" i_length="91">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52082" g_stop="51921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="298" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51920" i_stop="51834" i_length="87">
            <donor d_prob="0.821" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51833" g_stop="51705" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="427" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51704" i_stop="51532" i_length="173">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51531" g_stop="51430" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="529" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51429" i_stop="51340" i_length="90">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51339" g_stop="51260" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="609" r_length="80" r_score="0.938"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51259" i_stop="50125" i_length="1135">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50124" g_stop="50031" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="703" r_length="94" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E416817" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53295" e_stop="53275"/>
          <exon e_start="52287" e_stop="52174"/>
          <exon e_start="52082" e_stop="51921"/>
          <exon e_start="51833" e_stop="51705"/>
          <exon e_start="51531" e_stop="51430"/>
          <exon e_start="51339" e_stop="51260"/>
          <exon e_start="50124" e_stop="50031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGCTTGCACTCAAAGAGGTATACTTATTAATTGTGATAGAGTTTCACTGTAGAGTTTACCCAATTTTCTTTTCCATATTAATTTATATAGCTGTTAATCTGCCAATTTGTCCTCCATGATTTTCTCCCATAGTTGTGAAGTGGTACCAACCAGTTTGGTGACTGGCTAAATGGAACGTATGGAAACTCTAAGCTTGTTTTGCAATAAACAGTGCCGTGAAATAATTTTCATGAATCATTTTGTGGGGGACCTTGACTATAGAAAGTGCATAGTTCAATATATTGACATTCTATTTCTCAACCAAGAGTGCTGCTATTAATTAAATGAAAAGATAATTCCAGTGAATTTTTATTTGCATAATGGCATATTATGGGAGGACTCTACAGGAAATTGTATGCTCTCTTTTATTTAATATTCTAAACTTCATACTCTATCAAAATCAGTTTTGAGCCCTTTGCAAATTTTTATGGCAATAAGTTGCTAGCTATAATCAATGTTATCATCATGAATTTTACTTTCCTTTCTTTAGGTTTTATTCATGTTGTCAAACTTTTAAGAGTACCTAGCCTATACCTACGCGTGCTCTTTGTGAGTTAGTATTTACATGTGAAACGACATTCTAAAATACACTGGCTAAGCATTAGTTTTTTGTAGGATGCTGATGGAATATGATTGTACAAGCTACACTTGTAATCTCATTTTTGTGCTCTTATCATTTACCTCCATCAATTTACAGTTGCTCTTTCATTTGTCATTCATAGCCTTGAATGGTCTTCAATTTCTCTTTAATATCGGGTATCTTGCAAAAGCGTCAAGTTAATTCCCAAAATAGTTACTTTCTTCTTTCATGCATGATCATATTTGTCAGAGTTTTTTCAGAAGTTCATAGCGCAATAATTTCTCACCATTAACTAGTCTTGGCTGCATAACTGGAAGGACAGCTATATTGTTTACATCATAATTATTTGATTTATGTGCTGAGTTATTTGATGGTTCCATATAAGGCTAACAAGAAAACAAGGAACCGAGCGTACG-AGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATGGTATGACAATTATAATCTGATGAATTTATGTAATGGAGTAGGATCTTTCAGTTTGACATAAGCTTCATTGTCGTTGATGTTCCGCTGGCAGATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAGAGAGAACAAAGAAATAATTAAGGTGTGTTTTTGTCTGCATTAAGACACTCTTCGAATTATGTTCACCCGCCATCTTATGGATGTCAGCTGAAACTTGTCTTGAATGCAGGCTAATTTAGGGCTGTTGAAGGTACTGGTCACAAAATCGACGGCCGATGGATTGCAAGCACATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAGGTTTTTGCTTTTCTCCTAAATTCTAAACTTGTGGTTTGAGTTGGTTTTGGTTCCTGTATGCAATTACTCAATTTTCAGTGGTCTTCTCTAATTTTGTTTGTGGAATTTCTTTCCTGTTATGAAAAGATTAGATGTTGATTGAAAGGTGGCTGGGTGCATGTTATGTTTGACAGGTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAGGTTAGTTATGATCTGGACTAGAACCTGTGAAAATGCTAGTGTGATATTAAATGTTCAGATGAATTATTTATTCTTCTGATGAAAATGTAGATCAAAGAGCGAAGAGAGAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAGATCCCGTATGACAAAAGCAACGACATCAAGGTTGGTTTCCTTTCCTCCATACCTACATACTGAAGTTAAGAAGAATATGCACAAGAATATTGGTAGGGATGGTAATGGGTCGGGGCATATGTGTGGCGGGGTTGATTTAAGGCTATGTGGGATAGGTTGAATTTTTCTTTTTAAAACTATGCGGGGCGGGGTGGGTTGCAGATATTTGTGATTTTATGCGGGTTCATAGTTAATTTTAACTTTTTAAATGTAGAGTGATAGAACATTATTTATTAAGACGATTTCTTTAAAGCTACTAAATTATTCAAGATAGTTTATGAATATGGTTCAATAAAAAATAATACAATTTGTTACATTATCTGTTAAATTAACACAACTTTTTAAGTCATTATTACGTTATGAACTTCTAAAAACATTCGGAGCAAAATGATCATGCATGAAAGAAGAAAGTAACTATTTTAGGAATTAACTTGACGCTTTTGCCAAGTTACCCAATCTTAAAGATAAATCAAAGACCATTCAAGGCTATGAATAACAAATGAAAGAGCAACTGTAAATTGATGGAGGTAAATGATAAGAGAACAAAACTGAATTACAAGTGTAGTTTGTGCAGAATCATATTCCATCAGAATCCTACGAAGACTAATGCTTAGTGCCCAAATATTTTTTTACGTCATTATCTATTAAATTAATACAGCTTAATTAAAAAATGAAATTTATTTTTATAAATTTCTAGAAAAAATATTAAAATAATTATGCGGGGCGGGTTGAAAATGAAAAGGGTTGTTATGCAGAGCGGAGCGAGGTGGATTAAAAATTTTGCGGGTTAAACTCAACCCACCCCATTGTCATCCCTAAATGTTGGATGAACACAAGAATATTGGATGCCTAATGCATGGTGAAGCGACTAAAACATATTGGAGTATTTTATGTACCTTTGCTGGGTTGGAACAATTTTTTATCATGAAACAAATATTTGCCTATTTTTGACCGTCTCTGTGTTAATGATGAATCTTCAGATCATTCCCAGTTAAGATGGACAATGACTCTTTGGTCTTCAGTCTTTTGTAGTTTGTATCACATGGATAATAAGTCATTTCAATGCCTTGGTATCTTGTCAACTAGTTATAGTACCTGTGGTATTAACTTTTCCATCCTGTTACAGGCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTTGATGATGGAGAATCTGAGAACAGTGATGCAGAATATATGGACACGAAAACTACT</genome_strand>
        <mrna_strand>ATTTTGCTTGCACTCAAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAACAAGAAAACAAGGAACCGAGCGTATGAAGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAGGACAAAGGTGGCAGAAAGGAGAACCTGCATCAGTTTTTTAATATG...........................................................................................ATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTAGCTCGCCTTGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAGAGAGAGAACAAAGAAATAATTAAG.......................................................................................GCTAATTTAGGGCTGTTGAAGGTACTGGTCACAAAATCGACTGCCGATGGATTGCAAGCACATTTAAAGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAG.............................................................................................................................................................................GTTAAGCTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGGGCATATGAAACTCCTTACTAACATAAGAAAG..........................................................................................ATCAAGGAGCGAAGAGATAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAAGTCCCGTATGACAAAAGCAACAACATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTCGATGATGGAGAATCTGAGAATATTGATGCAGAATATATGGACACGAAAACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439478" ref_strand="+" ref_description="SGN-E439478 [cSTA-12-E14]">
      <seq>attttgcttgcactcaaagaggctaaccaagaaaacaaggaaccgagcgtatgagattcttgtcaagattggccatgccttgtgcagatgaggacaaaggtggcagaaaggagaacctgcatcagttttttaatatgattgctgggggtcttgccggggaaacacctcatatgatcagtgcagcggttaaaggcctagctcgccttgcttatgaattttcagaccttgtttctgctgcttacagtgtcctaccatcaacatttcttctccttaagagagagaacaaagaaataattaaggctaatttagggctgttgaaggtactggtcacaaaatcgactgccgatggattgcaagcaccatttaaagaacatggtagaggcccttcttggttggcaaaatagtaccaagaaccatttcaaagcccaggttaagctgcttattgaaatgcttatcaagaagtgtggattggatgctgtaaaagaggtgatgcctgaagggcatatgaaactccttactaacataagaaagatcaaggagcgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="52601" stop="51126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52287" g_stop="52174" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="137" r_length="116" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52173" i_stop="52083" i_length="91">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52082" g_stop="51921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="299" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51920" i_stop="51834" i_length="87">
            <donor d_prob="0.821" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51833" g_stop="51705" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="429" r_length="130" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51704" i_stop="51532" i_length="173">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51531" g_stop="51430" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="531" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51429" i_stop="51340" i_length="90">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51339" g_stop="51326" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="545" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E439478" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52287" e_stop="52174"/>
          <exon e_start="52082" e_stop="51921"/>
          <exon e_start="51833" e_stop="51705"/>
          <exon e_start="51531" e_stop="51430"/>
          <exon e_start="51339" e_stop="51326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAA-CAAGAAAACAAGGAACCGAGCGTACGAGATTCTTGTCAAGATTGGCCATG-CTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATGGTATGACAATTATAATCTGATGAATTTATGTAATGGAGTAGGATCTTTCAGTTTGACATAAGCTTCATTGTCGTTGATGTTCCGCTGGCAGATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAGAGAGAACAAAGAAATAATTAAGGTGTGTTTTTGTCTGCATTAAGACACTCTTCGAATTATGTTCACCCGCCATCTTATGGATGTCAGCTGAAACTTGTCTTGAATGCAGGCTAATTTAGGGCTGTTGAAGGTACTGGTCACAAAATCGACGGCCGATGGATTGCAAGCA-CATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAGGTTTTTGCTTTTCTCCTAAATTCTAAACTTGTGGTTTGAGTTGGTTTTGGTTCCTGTATGCAATTACTCAATTTTCAGTGGTCTTCTCTAATTTTGTTTGTGGAATTTCTTTCCTGTTATGAAAAGATTAGATGTTGATTGAAAGGTGGCTGGGTGCATGTTATGTTTGACAGGTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAGGTTAGTTATGATCTGGACTAGAACCTGTGAAAATGCTAGTGTGATATTAAATGTTCAGATGAATTATTTATTCTTCTGATGAAAATGTAGATCAAAGAGCGAAG</genome_strand>
        <mrna_strand>GCTAACCAAGAAAACAAGGAACCGAGCGTATGAGATTCTTGTCAAGATTGGCCATGCCTTGTGCAGATGAGGACAAAGGTGGCAGAAAGGAGAACCTGCATCAGTTTTTTAATATG...........................................................................................ATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTAGCTCGCCTTGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAGAGAGAGAACAAAGAAATAATTAAG.......................................................................................GCTAATTTAGGGCTGTTGAAGGTACTGGTCACAAAATCGACTGCCGATGGATTGCAAGCACCATTTAAAGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCCAG.............................................................................................................................................................................GTTAAGCTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGGGCATATGAAACTCCTTACTAACATAAGAAAG..........................................................................................ATCAAGGAGCGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339935" ref_strand="+" ref_description="SGN-E339935 [cTOF-3-F4]">
      <seq>gatgattgaagcactacctgcatgtcattttccagccaagcgtcacagacttgactgcctatactttttgattgtccatgttacgaaggatgaatcagaacagaggaggcgtgacagtattacttcttttatgactgaaattttgcttgcactcaaagaggctaacaagaaaacaaggaaccgagcgtacgagattcttgtcaagattggccatgcttgtgcagatgaagacaaaggtggcagaaaggagcacctgcatcagttttttaatatgattgctgggggtcttgccggggaaacacctcatatgatcagtgcagcggttaaaggccttgctcgactggcttatgaattttcagaccttgtttctgctgcttacagtgtcctaccatcaacatttcttctccttaaaagagagaacaaagaaataattaaggctaatttagggctgttgaaggtactggtcacaaaatcgacggccgatggattgcaagcacatttaaggaacatggtagaggcccttcttggttggcataatagtaccaagaaccatttcaaagccaaggttaaactgcttattgaaatgcttatcaagaagtgtggattggatgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="53835" stop="51182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53535" g_stop="53448" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53447" i_stop="53347" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53346" g_stop="53275" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="160" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53274" i_stop="52288" i_length="987">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52287" g_stop="52174" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="274" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52173" i_stop="52083" i_length="91">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52082" g_stop="51921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="436" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51920" i_stop="51834" i_length="87">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51833" g_stop="51705" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="565" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51704" i_stop="51532" i_length="173">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51531" g_stop="51482" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="615" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E339935" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53535" e_stop="53448"/>
          <exon e_start="53346" e_stop="53275"/>
          <exon e_start="52287" e_stop="52174"/>
          <exon e_start="52082" e_stop="51921"/>
          <exon e_start="51833" e_stop="51705"/>
          <exon e_start="51531" e_stop="51482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTGAAGCACTACCTGCATGTCATTTTCCAGCCAAGCGTCACAGACTTGACTGCCTATACTTTTTGATTGTCCATGTTACGAAGGTGAGGATTCTCCTCAAGTGGATGATACTAAGATGCCTCTGATTTATGCAAATTCTTACTGAATTTCGCGTAGTCTTTTAACGGTTTATTGCATTCTACAGGATGAATCAGAACAGAGGAGGCGTGACAGTATTACTTCTTTTATGACTGAAATTTTGCTTGCACTCAAAGAGGTATACTTATTAATTGTGATAGAGTTTCACTGTAGAGTTTACCCAATTTTCTTTTCCATATTAATTTATATAGCTGTTAATCTGCCAATTTGTCCTCCATGATTTTCTCCCATAGTTGTGAAGTGGTACCAACCAGTTTGGTGACTGGCTAAATGGAACGTATGGAAACTCTAAGCTTGTTTTGCAATAAACAGTGCCGTGAAATAATTTTCATGAATCATTTTGTGGGGGACCTTGACTATAGAAAGTGCATAGTTCAATATATTGACATTCTATTTCTCAACCAAGAGTGCTGCTATTAATTAAATGAAAAGATAATTCCAGTGAATTTTTATTTGCATAATGGCATATTATGGGAGGACTCTACAGGAAATTGTATGCTCTCTTTTATTTAATATTCTAAACTTCATACTCTATCAAAATCAGTTTTGAGCCCTTTGCAAATTTTTATGGCAATAAGTTGCTAGCTATAATCAATGTTATCATCATGAATTTTACTTTCCTTTCTTTAGGTTTTATTCATGTTGTCAAACTTTTAAGAGTACCTAGCCTATACCTACGCGTGCTCTTTGTGAGTTAGTATTTACATGTGAAACGACATTCTAAAATACACTGGCTAAGCATTAGTTTTTTGTAGGATGCTGATGGAATATGATTGTACAAGCTACACTTGTAATCTCATTTTTGTGCTCTTATCATTTACCTCCATCAATTTACAGTTGCTCTTTCATTTGTCATTCATAGCCTTGAATGGTCTTCAATTTCTCTTTAATATCGGGTATCTTGCAAAAGCGTCAAGTTAATTCCCAAAATAGTTACTTTCTTCTTTCATGCATGATCATATTTGTCAGAGTTTTTTCAGAAGTTCATAGCGCAATAATTTCTCACCATTAACTAGTCTTGGCTGCATAACTGGAAGGACAGCTATATTGTTTACATCATAATTATTTGATTTATGTGCTGAGTTATTTGATGGTTCCATATAAGGCTAACAAGAAAACAAGGAACCGAGCGTACGAGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATGGTATGACAATTATAATCTGATGAATTTATGTAATGGAGTAGGATCTTTCAGTTTGACATAAGCTTCATTGTCGTTGATGTTCCGCTGGCAGATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAGAGAGAACAAAGAAATAATTAAGGTGTGTTTTTGTCTGCATTAAGACACTCTTCGAATTATGTTCACCCGCCATCTTATGGATGTCAGCTGAAACTTGTCTTGAATGCAGGCTAATTTAGGGCTGTTGAAGGTACTGGTCACAAAATCGACGGCCGATGGATTGCAAGCACATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAGGTTTTTGCTTTTCTCCTAAATTCTAAACTTGTGGTTTGAGTTGGTTTTGGTTCCTGTATGCAATTACTCAATTTTCAGTGGTCTTCTCTAATTTTGTTTGTGGAATTTCTTTCCTGTTATGAAAAGATTAGATGTTGATTGAAAGGTGGCTGGGTGCATGTTATGTTTGACAGGTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGT</genome_strand>
        <mrna_strand>GATGATTGAAGCACTACCTGCATGTCATTTTCCAGCCAAGCGTCACAGACTTGACTGCCTATACTTTTTGATTGTCCATGTTACGAAG.....................................................................................................GATGAATCAGAACAGAGGAGGCGTGACAGTATTACTTCTTTTATGACTGAAATTTTGCTTGCACTCAAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAACAAGAAAACAAGGAACCGAGCGTACGAGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATG...........................................................................................ATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAGAGAGAACAAAGAAATAATTAAG.......................................................................................GCTAATTTAGGGCTGTTGAAGGTACTGGTCACAAAATCGACGGCCGATGGATTGCAAGCACATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCATAATAGTACCAAGAACCATTTCAAAGCCAAG.............................................................................................................................................................................GTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341621" ref_strand="+" ref_description="SGN-E341621 [cTOE-23-E10]">
      <seq>aggactgtgatgaatttatttccacgaagaccgaagagttgcttaatttgatgattgaagcactacctgcatgtcattttccagccaagcgtcacagacttgactgcctatactttttgattgtccatgttacgaaggatgaatcagaacagaggaggcgtgacagtattacttcttttatgactgaaattttgcttgcactcaaagaggctaacaagaaaacaaggaaccgagcgtacgagattcttgtcaagattggccatgcttgtgcagatgaagacaaaggtggcagaaaggagcacctgcatcagttttttaatatgattgctgggggtcttgccggggaaacacctcatatgatcagtgcagcggttaaaggccttgctcgactggcttatgaattttcagaccttgtttctgctgcttacagtgtcctaccatcaacatttcttctccttaaaagagagaacaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="53884" stop="51629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53584" g_stop="53448" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53447" i_stop="53347" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53346" g_stop="53275" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="209" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53274" i_stop="52288" i_length="987">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52287" g_stop="52174" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="323" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52173" i_stop="52083" i_length="91">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52082" g_stop="51929" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="477" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E341621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53584" e_stop="53448"/>
          <exon e_start="53346" e_stop="53275"/>
          <exon e_start="52287" e_stop="52174"/>
          <exon e_start="52082" e_stop="51929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACTGTGATGAATTTATTTCCACGAAGACCGAAGAGTTGCTTAATTTGATGATTGAAGCACTACCTGCATGTCATTTTCCAGCCAAGCGTCACAGACTTGACTGCCTATACTTTTTGATTGTCCATGTTACGAAGGTGAGGATTCTCCTCAAGTGGATGATACTAAGATGCCTCTGATTTATGCAAATTCTTACTGAATTTCGCGTAGTCTTTTAACGGTTTATTGCATTCTACAGGATGAATCAGAACAGAGGAGGCGTGACAGTATTACTTCTTTTATGACTGAAATTTTGCTTGCACTCAAAGAGGTATACTTATTAATTGTGATAGAGTTTCACTGTAGAGTTTACCCAATTTTCTTTTCCATATTAATTTATATAGCTGTTAATCTGCCAATTTGTCCTCCATGATTTTCTCCCATAGTTGTGAAGTGGTACCAACCAGTTTGGTGACTGGCTAAATGGAACGTATGGAAACTCTAAGCTTGTTTTGCAATAAACAGTGCCGTGAAATAATTTTCATGAATCATTTTGTGGGGGACCTTGACTATAGAAAGTGCATAGTTCAATATATTGACATTCTATTTCTCAACCAAGAGTGCTGCTATTAATTAAATGAAAAGATAATTCCAGTGAATTTTTATTTGCATAATGGCATATTATGGGAGGACTCTACAGGAAATTGTATGCTCTCTTTTATTTAATATTCTAAACTTCATACTCTATCAAAATCAGTTTTGAGCCCTTTGCAAATTTTTATGGCAATAAGTTGCTAGCTATAATCAATGTTATCATCATGAATTTTACTTTCCTTTCTTTAGGTTTTATTCATGTTGTCAAACTTTTAAGAGTACCTAGCCTATACCTACGCGTGCTCTTTGTGAGTTAGTATTTACATGTGAAACGACATTCTAAAATACACTGGCTAAGCATTAGTTTTTTGTAGGATGCTGATGGAATATGATTGTACAAGCTACACTTGTAATCTCATTTTTGTGCTCTTATCATTTACCTCCATCAATTTACAGTTGCTCTTTCATTTGTCATTCATAGCCTTGAATGGTCTTCAATTTCTCTTTAATATCGGGTATCTTGCAAAAGCGTCAAGTTAATTCCCAAAATAGTTACTTTCTTCTTTCATGCATGATCATATTTGTCAGAGTTTTTTCAGAAGTTCATAGCGCAATAATTTCTCACCATTAACTAGTCTTGGCTGCATAACTGGAAGGACAGCTATATTGTTTACATCATAATTATTTGATTTATGTGCTGAGTTATTTGATGGTTCCATATAAGGCTAACAAGAAAACAAGGAACCGAGCGTACGAGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATGGTATGACAATTATAATCTGATGAATTTATGTAATGGAGTAGGATCTTTCAGTTTGACATAAGCTTCATTGTCGTTGATGTTCCGCTGGCAGATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAGAGAGAACAAAGAAA</genome_strand>
        <mrna_strand>AGGACTGTGATGAATTTATTTCCACGAAGACCGAAGAGTTGCTTAATTTGATGATTGAAGCACTACCTGCATGTCATTTTCCAGCCAAGCGTCACAGACTTGACTGCCTATACTTTTTGATTGTCCATGTTACGAAG.....................................................................................................GATGAATCAGAACAGAGGAGGCGTGACAGTATTACTTCTTTTATGACTGAAATTTTGCTTGCACTCAAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAACAAGAAAACAAGGAACCGAGCGTACGAGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATG...........................................................................................ATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAGAGAGAACAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740448" ref_strand="+" ref_description="SGN-E740448 [LC21BH09]">
      <seq>ccgatatcaggcagaggcttttggaggtgacccaagaagctggggaggcagggaaggacaaaaaatcgcattcaatgcagattgatgactcatccagtaaaagttctttgtcagagagggcacagttatttgatctggcagtttcattcttgcctggtttaaacgctcaagaaattggtgtgctgtttggtgctttaaagcctgctttaaaggatgaggaaggcttgatccagaagaaggcatataaagttctctccatgatccttcaggactgtgatgaatttatttccacgaagaccgaagagttgcttaatttgatgattgaagcactacctgcatgtcattttccagccaagcgtcacagacttgactgcctatactttttgattgtccatgttacgaaggatgaatcagaacagaggaggcgtgacagtattacttcttttatgactgaaattttgcttgcactcaaagaggctaacaagaaaacaaggaaccgagcgtacgagattcttgtcaagattggccatgcttgtgcagatgaagacaaaggtggcagaaaggagcacctgcatcagttttttaatatgattgctgggggtcttgccggggaaacacctcatatgatcagtgcagcggttaaaggccttgctcgactggcttatgaattttcagaccttgtttctgctgcttacagtgtcctaccatcaacatttcttctccttaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="54727" stop="51643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54427" g_stop="54310" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54309" i_stop="54213" i_length="97">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54212" g_stop="54119" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="212" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54118" i_stop="54041" i_length="78">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.305" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54040" g_stop="53984" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="269" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53983" i_stop="53583" i_length="401">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53582" g_stop="53448" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="404" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53447" i_stop="53347" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53346" g_stop="53275" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="476" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53274" i_stop="52288" i_length="987">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52287" g_stop="52174" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="590" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52173" i_stop="52083" i_length="91">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52082" g_stop="51943" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="730" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E740448" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54427" e_stop="54310"/>
          <exon e_start="54212" e_stop="54119"/>
          <exon e_start="54040" e_stop="53984"/>
          <exon e_start="53582" e_stop="53448"/>
          <exon e_start="53346" e_stop="53275"/>
          <exon e_start="52287" e_stop="52174"/>
          <exon e_start="52082" e_stop="51943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAATCATGCAGAGGCTTTTGGAGGTGACCCAAGAAGCTGGGGAGGCAGGGAAGGACAAAAAATCGCATTCAATGCAGATTGATGACTCATCCAGTAAAAGTTCTTTGTCAGAGAGGTAGGATGACTAAATCACATTTGTTTCATTCCTTCTGCCGTTAAGCCCTTTTTCCTTTGTGTTAATGCCATTCATATCTCTTGCTTCTACCATTTAGGGCACAGTTATTTGATCTGGCAGTTTCATTCTTGCCTGGTTTAAACGCTCAAGAAATTGGTGTGCTGTTTGGTGCTTTAAAGCCTGCTTTAAAGGTTGGTAGCAGTTGTGGCTTTGCTTCTGCACTTTTAGCTTCTTCATGTAGAAAGTTTATTAACTAATATGAGGCACAGGATGAGGAAGGCTTGATCCAGAAGAAGGCATATAAAGTTCTCTCCATGATCCTTCAGGTAAGTTTTTTCCCAAAGTATCATGAAGTTATTATTGAAGTTTCTTCTCAGAATTCTTCTCAACATATCTAAGACTGGACGGTTATATCAAAACTTAGAAATGATTTCAAGATAACTTTTTAGTTGAGTAAGCTTTGTAAAATATCATTATCATGGTTCAGAATATTTGGAGGAAAGGCGATTTAGGCCTTTCATGTTAATGCAGTCATTTGATGGTACCCAATTGAATTAAATTCCAAGATTGAATACTTGAATTTGGCATGACAGTTATTTATGCCCTTGTCCTTGTTCTGAAGCAAGTAATCTGAACTATAATGTTAAAGCACCTCTTTTATGATTCTTAATTATATTTTTGACACATTTATTTTGTGGCTAATAAGTTTTGCAACTTCTGTGTACAGGACTGTGATGAATTTATTTCCACGAAGACCGAAGAGTTGCTTAATTTGATGATTGAAGCACTACCTGCATGTCATTTTCCAGCCAAGCGTCACAGACTTGACTGCCTATACTTTTTGATTGTCCATGTTACGAAGGTGAGGATTCTCCTCAAGTGGATGATACTAAGATGCCTCTGATTTATGCAAATTCTTACTGAATTTCGCGTAGTCTTTTAACGGTTTATTGCATTCTACAGGATGAATCAGAACAGAGGAGGCGTGACAGTATTACTTCTTTTATGACTGAAATTTTGCTTGCACTCAAAGAGGTATACTTATTAATTGTGATAGAGTTTCACTGTAGAGTTTACCCAATTTTCTTTTCCATATTAATTTATATAGCTGTTAATCTGCCAATTTGTCCTCCATGATTTTCTCCCATAGTTGTGAAGTGGTACCAACCAGTTTGGTGACTGGCTAAATGGAACGTATGGAAACTCTAAGCTTGTTTTGCAATAAACAGTGCCGTGAAATAATTTTCATGAATCATTTTGTGGGGGACCTTGACTATAGAAAGTGCATAGTTCAATATATTGACATTCTATTTCTCAACCAAGAGTGCTGCTATTAATTAAATGAAAAGATAATTCCAGTGAATTTTTATTTGCATAATGGCATATTATGGGAGGACTCTACAGGAAATTGTATGCTCTCTTTTATTTAATATTCTAAACTTCATACTCTATCAAAATCAGTTTTGAGCCCTTTGCAAATTTTTATGGCAATAAGTTGCTAGCTATAATCAATGTTATCATCATGAATTTTACTTTCCTTTCTTTAGGTTTTATTCATGTTGTCAAACTTTTAAGAGTACCTAGCCTATACCTACGCGTGCTCTTTGTGAGTTAGTATTTACATGTGAAACGACATTCTAAAATACACTGGCTAAGCATTAGTTTTTTGTAGGATGCTGATGGAATATGATTGTACAAGCTACACTTGTAATCTCATTTTTGTGCTCTTATCATTTACCTCCATCAATTTACAGTTGCTCTTTCATTTGTCATTCATAGCCTTGAATGGTCTTCAATTTCTCTTTAATATCGGGTATCTTGCAAAAGCGTCAAGTTAATTCCCAAAATAGTTACTTTCTTCTTTCATGCATGATCATATTTGTCAGAGTTTTTTCAGAAGTTCATAGCGCAATAATTTCTCACCATTAACTAGTCTTGGCTGCATAACTGGAAGGACAGCTATATTGTTTACATCATAATTATTTGATTTATGTGCTGAGTTATTTGATGGTTCCATATAAGGCTAACAAGAAAACAAGGAACCGAGCGTACGAGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATGGTATGACAATTATAATCTGATGAATTTATGTAATGGAGTAGGATCTTTCAGTTTGACATAAGCTTCATTGTCGTTGATGTTCCGCTGGCAGATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAG</genome_strand>
        <mrna_strand>CCGATATCAGGCAGAGGCTTTTGGAGGTGACCCAAGAAGCTGGGGAGGCAGGGAAGGACAAAAAATCGCATTCAATGCAGATTGATGACTCATCCAGTAAAAGTTCTTTGTCAGAGAG.................................................................................................GGCACAGTTATTTGATCTGGCAGTTTCATTCTTGCCTGGTTTAAACGCTCAAGAAATTGGTGTGCTGTTTGGTGCTTTAAAGCCTGCTTTAAAG..............................................................................GATGAGGAAGGCTTGATCCAGAAGAAGGCATATAAAGTTCTCTCCATGATCCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................GACTGTGATGAATTTATTTCCACGAAGACCGAAGAGTTGCTTAATTTGATGATTGAAGCACTACCTGCATGTCATTTTCCAGCCAAGCGTCACAGACTTGACTGCCTATACTTTTTGATTGTCCATGTTACGAAG.....................................................................................................GATGAATCAGAACAGAGGAGGCGTGACAGTATTACTTCTTTTATGACTGAAATTTTGCTTGCACTCAAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAACAAGAAAACAAGGAACCGAGCGTACGAGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATG...........................................................................................ATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740401" ref_strand="+" ref_description="SGN-E740401 [LC21BA10]">
      <seq>ccattaggaagctataagggctgcgctggaggcactcaagattttaatacatgaatgcattgatgaaaacttgatcaaacagggtgtggataacataattagttcgaatactgatgcgaaaaaatctggaccaactatcattgagaaaatctgtgccacaattgagagcttgcttacctatcactatgcagcagtttgggacatgtcatttcaagtggtggttgccatgtttgataagctaggttgctattcttctcaccttctgaagggaacactacagagtttggctgatatggaaaagttgccagatgaagacttccctttccgtagacagctgcacgaatgtgttggatcagctgttggtgcaatgggacctgaatcttttcttactcttcttcctcttaaactggatgtacaagatctgtcagagtccaacatctggcttttcccaattctaaagcaaaatattgttggtgcgcatttaagtttctttaccaactcaattttgccaatggttggagctatgaagcagaggtctgcaatgcttgagcgcgagggaaagatatattcagcaagaactattgatggaattgtgtactcattgtggtcactgttaccctcattttgcaattaccctgtcgacactgctgaaagcttcaaggatctggagaaggtattccgcaaagctctacatgaagagcctgatgtttgtgggataatatgctccagtttgcagatcctcgttcagcaaaatgatagcattttaaaagggacagttgatctgtctgatactgaaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="61051" stop="55464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60752" g_stop="60511" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60510" i_stop="60167" i_length="344">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60166" g_stop="60075" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="334" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60074" i_stop="56331" i_length="3744">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56330" g_stop="56121" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="544" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56120" i_stop="56022" i_length="99">
            <donor d_prob="0.347" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56021" g_stop="55764" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="802" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E740401" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60752" e_stop="60511"/>
          <exon e_start="60166" e_stop="60075"/>
          <exon e_start="56330" e_stop="56121"/>
          <exon e_start="56021" e_stop="55764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGAGGAAGCTATAAGGGTTGCGCTGGAGGCACTCAAGATTTTAATACATGAATGCATTGATGAAAACTTGATCAAACAGGGTGTGGATAACATAATTAGTTCGAATACTGATGCGAAAAAATCTGGACCAACTATCATTGAGAAAATCTGTGCCACAATTGAGAGCTTGCTTACCTATCACTATGCAGCAGTTTGGGACATGTCATTTCAAGTGGTGGTTGCCATGTTTGATAAGCTAGGTGATTATCTGTTAAAAAATCTATTAGCCATCTTAAGCTCTAAAACTCAATATTTAGTTTCAAGTTGTTGAATGGTCTATAAATTATTTTGTATATATAGTTTTCTACACTAACTCTAATTAGGTTTCATGGATTTGGACTTCCTAAAATGATATCCACTTTGATAAAACTGAGTACTTGTTGTTGCTTCTTTCCTTAGTATTCTACTACTGATCATGCCTATTGTAAGTGACTTATCATTGGACGGAATTGGTGATGTAATGAGCTAGATTTAATTGCGTTCTTCCTATACATCAACCAAGGAATGACTAGCAAAGTGCTACTTTTCATTGACTTCTTTTTAGGTTGCTATTCTTCTCACCTTCTGAAGGGAACACTACAGAGTTTGGCTGATATGGAAAAGTTGCCAGATGAAGACTTCCCTTTCCGTAGACAGGTGAGCCTTGCTTTTGGGGTTGTTTATTCATGGAAATGGCTTTTGTCGTGTTAACCTTGATGTCATTGGGGGAGTCCTTTTTTCTTTTTCTTTCTCCCTCACCTATTTATTCTTATATTGCTGCTATTTACAATTCAACCTTTTCGGCGACAGTTTGTCGTTTTTCCTATTTGGTATCTGACAGACAATGAGAATATTTTTTTAAACATTGATAAAATTGTATTCTTCCGTATTAAGGATATGCTGGCCACCTTAAATAATTTACAGCCCTAACCAAAATTACAAGCTCCCTATTAATTTTATTATTTGATCTACATCTTCTATATAGAGCTATTTGCACCAAAAAAGTAGTGATACCAAACAATTCCATTTTACTTTGTGAATGGAGTTAGATCTATCTTCAAAACTAGCTTCCACCATTTCTTTTTAGTCTTGCTACCCCCTTCTGATCCAGCAACTAAAAAGGTCAGAAGTTTGTCCTCGCATAGTCCACTTGAAACCTCTGATGTGGGGAACAACTTGCAGATCTGTGTTGTGAATTTGCAATGTAGGAAAAAGTGTTTGTTTGTTTCCCATATTAACTTGCATAGAGAACTCCTAGGGACTAGTTGCATTCCTCTCTTCTGTAGGACTTCTTGAGTTGAGCAGGCTCTTTTGATGACTAACCAAGTGAAGCATTTCACTTTAGTGAAGTTTATTGATTAAGTTGGTCTTTGCAATTAAAATAGTAGCGTACTGTTACTGCTCAGTCCTTGCGTTGAATGGAGATCTCAAAAATTGATAAACAATGTTTTATGATCATGATACTTAAAATGATGCAAATGAACACAAAAGTTTTGTATGTAGAATAGGATCAGAAAGGAATTTTTTAAAAATGAACTACAAGAATATGATGAGAGAGCATTGCAGGTTTTCTGATAGATCGTAGCTAAGGAAAGGAAATGAATAAAAATTTTAAGTATATGGATTTCTATCTGGATCAACTTGATTCAGTAAATGAGTTAAAAATAGAACTTGATGAGTAATTTCTAGTAGATGTTGGTAAAGTTTGTGCAGAAATTCCAGAAAGTATAAAATGTAGAGACAAAGGATGGAGTAGCATTTTAGTCTTCTTCCGAGACATCTTCGACTGATGTTTTATACATAATATTTGATTTGGCAAATGGCATACCCTCTTGATAAAAAAACAGGACTGATCCTTTTTGCACCAACAAGAGAATTGACTAGGAAAAATACAGAATAGAGACACTTGAGAATTAAAAAGAGTAGTTGAGACCTAGCAAAGAAAGGATCAACAAACTCCTTTTGTTGATGATTGCTGTGTCATGAAATAACAGTATTTATTTTTAAGTGTGATATACAGTTAAAAAACCACAATTTATTTATAAGTGTTGAGATACACTACAAAAATCATAAATTTGTACAAATATAATCAATGATTGTGTTGAACATTTGTTATAACGGCTCTTGATTTTTGGATGGTTCGTTTAGTGGGTGTGCCTTATCTTTTGCCTTTTGTCAACACCATCAATTTCCAAATGGGACCAACTCGATTCCTTGAATTGTCCTTATCATTATTTCCAAAAATGTGATTCAATGCAACAAATTTGTATAATATGTTTGACAACATTAGTGTCATGGTAAGGATGATTTCACTAACATGTTGATTGGATTAAAGAAGCAACTTAGGGGTATCGGGGTAGCCCAAATGAGTAAAAAAGGATTAGTGGTGAAATGGAGGGGTCTAAGGAAAAGTGGTATCCAAGAAGGTTAGATGGTTGAGAAGGATGTGAAGCTAGCGGTTACAACTACTAAATGACAGTTTTTGAGTTCATGTATGAGGAGCTTGAATGCAAAGGCAGGTATATAAAGTTGTATAAGCTTGCCAAGGTGATAGAGGAGGGCATGTAACCTAGGCCAAGTGAAGTGCATCAAGGATGATAATGACAAAGTGTTGGTGAAGAAGAGCCACATATTATAAAATAAAAAACCTACCCGATTATTTTGTATGGCTACAGATTTATATAAAAGTTTTTTTGTTTTAGTAAGAGAAACCTAATAATCATTTCACTTAGTAAATGGTTTTTTAAAAACCATGGACACCTCTACATTAGGGAAACTATAGATTGTACGATGGAGTTAAAATAATGGAGGTGACTCAATATCCTTCTCAATCATGATGGGATTGCATCAGGGATCACCCTTAGTTCATTCCTATGTGCCTTGGTGATGGATGAATTGACACGACATATTCAAGGGAAAGCATCGTGGATTATTTATTCTCATATACAATATTGATTGATGAGACGCACAGTGGAGTTAACGACACGTTGGAAGTTTGGAGAGAAACCTTAGAGTCTAAAGTTTCAGCTGAAGTAGGACTATGTGTAGTACCTGGAATGCAAGTTTAGTGAAAATTGATGCACAAGTTATACCCAAGAAAGGAAGTTTCAAGTATCTTCGAACCATAATCCAAGGAAACAAGGAGATTACTGATGATGTCTCACATCATATTAGAGTAGGGTGTATGAGATAGAGGCTTGCATTTGTGGTATTGTTCCATAAGAATGTGTCACCAAGCTTTAAAAGTAAGTTCTACCGGGTAGTGGTTAGACCAACTGTGTTGATGTGGCTAAGTGTTTGGACATTCAAGAAGATACAGTTCAGAAGATGAATGTAGGAGAGATGAAGATGGTCATATCAATGTGTGGGCAAACTAAAAGAGATTAGATTAGAAACAAAGTTATATTGGGTATGGTAGGAGTGGCCCTCGTTGCGGACAAGATGAAGAAGGTGAGGCTGAGATGATTCAAACATATGAAAAGAGGTGTCTGGATGTGTATCTATGGAGGTGTTAGCGTGGTATTTAGGTGAGGTAGAGATAGACCGAAGAAGAATTTGGGGAGGTGATTAGACAAAGACATGACACAACAACATGACAGGAAGGCTGATGATTACGGTAGAAGGTTAGTAGGTAGAAAAGTGTTGTCACACTATATATGGGAAAGGCAGCGGGCCAACCTCCTCTCGTCTCATTCTTATTAGTTGTAATATTTACTAATCGTATAATGTATCTTATTCTTCAATGTGTATTACTATTTGTTGCTTCATTTTTTTTTTCTTGCGATCCTACTTCAGTATACTTCGGAAACTTCTCGTTTGAGCCGAGGGTCTATCAGAAACAACCTCTCTACCCACGCAAAGGTATGGGTAAAGTTTGTGTACATTCTGCCCTCTCCAAAACCCCACTTGTGGGATTACACTGGATATGTTGTTGCTAACAATTTCCTTGATGATCAGTTTATGGCTTAAAGTAATGCTGGTTTTTGAAACAGTAATGGTTCTCGTATTCTCCAAGGTTTACCTTGTGCATCTTATTAGTCATGTAATGGAATGTGTGGAATTTTGCACAAGTATGATCTTGCTTTATGTGGATCTTCTTTCTCGCCTAAAATTAGATTCAGTCGGAAAAAAGAACCATGAAAATATGCCTGTGGCCTGCTTCGCTAGTTACTCAAATAACCTCCCGCTTTCAAAAATATTGGCAGAGAGTGACCATGGTCCCTAACCATTATCCGTGGAAATATAGGTTGTGTCTTAGCAGGGGATCTTTTCCCTTGTGGAGTTTTTTTTTCCTGTAGTTCCTTAATGTTCTTAGGGATCTGATTTGTGAGTATAGGTTTAGCTATAACATTTTCTTATCTAATAGAATATGCTGATAATTTACGGCTTTGTTGATAACAGCTGCACGAATGTGTTGGATCAGCTGTTGGTGCAATGGGACCTGAATCTTTTCTTACTCTTCTTCCTCTTAAACTGGATGTACAAGATCTGTCAGAGTCCAACATCTGGCTTTTCCCAATTCTAAAGCAAAATATTGTTGGTGCGCATTTAAGTTTCTTTACCAACTCAATTTTGCCAATGGTTGGAGCTATGAAGCAGAGGTCTGCAATGGTATGTTTGATGCTAAATCACACTCCCCCTCACCCCCTACACACACACACACTTTTTCTTTTATTTACATGGTGAGCTCATTCTTATGTTTTCTGCCAGCTTGAGCGCGAGGGAAAGATATATTCAGCAAGAACTATTGATGGAATTGTGTACTCATTGTGGTCACTGTTACCCTCATTTTGCAATTACCCTGTCGACACTGCTGAAAGCTTCAAGGATCTGGAGAAGGTATTCCGCAAAGCTCTACATGAAGAGCCTGATGTTTGTGGGATAATATGCTCCAGTTTGCAGATCCTCGTTCAGCAGAATGATAGCATTTTAAAAGGGACAGTTGATCTGTCTGATACTGAAACAAAC</genome_strand>
        <mrna_strand>CCATTAGGAAGCTATAAGGGCTGCGCTGGAGGCACTCAAGATTTTAATACATGAATGCATTGATGAAAACTTGATCAAACAGGGTGTGGATAACATAATTAGTTCGAATACTGATGCGAAAAAATCTGGACCAACTATCATTGAGAAAATCTGTGCCACAATTGAGAGCTTGCTTACCTATCACTATGCAGCAGTTTGGGACATGTCATTTCAAGTGGTGGTTGCCATGTTTGATAAGCTAG........................................................................................................................................................................................................................................................................................................................................................GTTGCTATTCTTCTCACCTTCTGAAGGGAACACTACAGAGTTTGGCTGATATGGAAAAGTTGCCAGATGAAGACTTCCCTTTCCGTAGACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACGAATGTGTTGGATCAGCTGTTGGTGCAATGGGACCTGAATCTTTTCTTACTCTTCTTCCTCTTAAACTGGATGTACAAGATCTGTCAGAGTCCAACATCTGGCTTTTCCCAATTCTAAAGCAAAATATTGTTGGTGCGCATTTAAGTTTCTTTACCAACTCAATTTTGCCAATGGTTGGAGCTATGAAGCAGAGGTCTGCAATG...................................................................................................CTTGAGCGCGAGGGAAAGATATATTCAGCAAGAACTATTGATGGAATTGTGTACTCATTGTGGTCACTGTTACCCTCATTTTGCAATTACCCTGTCGACACTGCTGAAAGCTTCAAGGATCTGGAGAAGGTATTCCGCAAAGCTCTACATGAAGAGCCTGATGTTTGTGGGATAATATGCTCCAGTTTGCAGATCCTCGTTCAGCAAAATGATAGCATTTTAAAAGGGACAGTTGATCTGTCTGATACTGAAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249530" ref_strand="+" ref_description="SGN-E249530 [cLEF-56-N19]">
      <seq>gccaatggttggagctatgaagcagaggtctgcaatgcttgagcgcgagggaaagatatattcagcaagaactattgatggaattgtgtactcattgtggtcactgttaccctcattttgcaattaccctgtcgacactgctgaaagcttcaaggatctggagaaggtattccgcaaagctctacatgaagagcctgatgtttgtgggataatatgctccagtttgcagatcctcgttcagcagaatgatagcattttaaaagggacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="56457" stop="55488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56157" g_stop="56121" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56120" i_stop="56022" i_length="99">
            <donor d_prob="0.347" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56021" g_stop="55788" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="271" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E249530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56157" e_stop="56121"/>
          <exon e_start="56021" e_stop="55788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATGGTTGGAGCTATGAAGCAGAGGTCTGCAATGGTATGTTTGATGCTAAATCACACTCCCCCTCACCCCCTACACACACACACACTTTTTCTTTTATTTACATGGTGAGCTCATTCTTATGTTTTCTGCCAGCTTGAGCGCGAGGGAAAGATATATTCAGCAAGAACTATTGATGGAATTGTGTACTCATTGTGGTCACTGTTACCCTCATTTTGCAATTACCCTGTCGACACTGCTGAAAGCTTCAAGGATCTGGAGAAGGTATTCCGCAAAGCTCTACATGAAGAGCCTGATGTTTGTGGGATAATATGCTCCAGTTTGCAGATCCTCGTTCAGCAGAATGATAGCATTTTAAAAGGGACAGTT</genome_strand>
        <mrna_strand>GCCAATGGTTGGAGCTATGAAGCAGAGGTCTGCAATG...................................................................................................CTTGAGCGCGAGGGAAAGATATATTCAGCAAGAACTATTGATGGAATTGTGTACTCATTGTGGTCACTGTTACCCTCATTTTGCAATTACCCTGTCGACACTGCTGAAAGCTTCAAGGATCTGGAGAAGGTATTCCGCAAAGCTCTACATGAAGAGCCTGATGTTTGTGGGATAATATGCTCCAGTTTGCAGATCCTCGTTCAGCAGAATGATAGCATTTTAAAAGGGACAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721395" ref_strand="+" ref_description="SGN-E721395 [FC13DA08]">
      <seq>gggcgattggcggccaatcggccgaattggcaattaaataaatcacagctaatccttgcccccctctctcttttttttgtctcccacataaatcataatacaatacaatactttgcttcctaccaacacatacattcacaaaaatgatgaaaactctacttgtttctctgtttctaatttcatcagtgactacatcatcatcttcttctgctagtgacattgtccgctcttcctgcgtgcacgccagctatcccacaatttgcgtcaaaacactctcttcatactcggacacacccattaacaccccgcaggatttagctcaagccgcggtgaaaattaccctttctcgagcaggtaaagcgtctgggttcctgtctcgggtgaaagtggaaagcaaaagagagaaaggggcattgagtgattgtatcgaacaaatgggtgactcgatggaggagctgaggaaaagtttgtcaaagcttaaacatgtacgcaggggaaatgcatttaagtggcaaatgagcaatttggagacgtgggtaagtgctgctttgacaaatgaaaatacatgtcttgatggattcaaggaaattgatggcaaaatcaggtctgatgtgaaacgaaagattacaaatgttgctagagttactagtaatgcactttaccttatcaatcgactggatgattctgcaaacaaaattactcatccttgatcattaattcggttaattaacattaccgggagaaataatagcgagagcttaatgcatttggttgttctttcttctttttctgcggtaactatgcattttattggttagaaaccagtattattaatggtgcaatatttataaggtaagaattatctaaattccaatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="69485" stop="68035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69185" g_stop="68335" g_length="851"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="880" r_length="851" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E721395" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69185" e_stop="68335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTAAATAAATCACAGCTAATCCTTGCCCCCCTCTCTCTTTTTTTTGTCTCCCACATAAATCATAATACAATACAATACTTTGCTTCCTACCAACACATACATTCACAAAAATGATGAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAGAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTATAAGGTAAGAATTATCTAAATTCCAATTTGGC</genome_strand>
        <mrna_strand>GCAATTAAATAAATCACAGCTAATCCTTGCCCCCCTCTCTCTTTTTTTTGTCTCCCACATAAATCATAATACAATACAATACTTTGCTTCCTACCAACACATACATTCACAAAAATGATGAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAAAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAAATGGGTGACTCGATGGAGGAGCTGAGGAAAAGTTTGTCAAAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAAATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACAAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTATAAGGTAAGAATTATCTAAATTCCAATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578175" ref_strand="+" ref_description="SGN-E578175 [LE12AB10]">
      <seq>gaaaactctacttgtttctctgtttctaatttcatcagtgactacatcatcatcttcttctgctagtgacattgtccgctcttcctgcgtgcacgccagctatcccacaatttgcgtcagaacactctcttcatactcggacacacccattaacaccccgcaggatttagctcaagccgcggtgaaaattaccctttctcgagcaggtaaagcgtctgggttcctgtctcgggtgaaagtggaaagcaaaagagagaaaggggcattgagtgattgtatcgaacagatgggtgactcgatggaggagctgaggaagagtttgtcagagcttaaacatgtacgcaggggaaatgcatttaagtggcaaatgagcaatttggagacgtgggtaagtgctgctttgacaaatgaagatacatgtcttgatggattcaaggaaattgatggcaaaatcaggtctgatgtgaaacgaaagattacgaatgttgctagagttactagtaatgcactttaccttatcaatcgactggatgattctgcaaacaaaattactcatccttgatcattaattcggttaattaacattaccgggagaaataatagcgagagcttaatgcatttggttgttctttcttctttttctgcggtaactatgcattttattggttagaaaccagtattattaatggtgcaatatttataaggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="69366" stop="68056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69066" g_stop="68363" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="716"/>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E578175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69066" e_stop="68363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAGAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTATAAG</genome_strand>
        <mrna_strand>GAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAGAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687669" ref_strand="+" ref_description="SGN-E687669 [T3_tus_79_F17]">
      <seq>gtaaagcaaaagagagaaaggggcattgagtgattgtatcgaacagatgggtgactcgatggaggagctgaggaagagtttgtcagagcttaaacatgtacgcaggggaaatgcatttaagtggcaaatgagcaatttggagacgtgggtaagtgctgctttgacaaatgaagatacatgtcttgatggattcaaggaaattgatggcaaaatcaggtctgatgtgaaacgaaagattacgaatgttgctagagttactagtaatgcactttaccttatcaatcgactggatgattctgcaaacaaaattactcatccttgatcattaattcggttaattaacattaccgggagaaataatagcgagagcttaatgcatttggttgttctttcttctttttctgcggtaactatgcattttattggttagaaaccagtattattaatggtgcaatatttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="69126" stop="68064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68826" g_stop="68363" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="474"/>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E687669" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68826" e_stop="68363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTATAAG</genome_strand>
        <mrna_strand>GTAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687695" ref_strand="+" ref_description="SGN-E687695 [T3_tus_79_H19]">
      <seq>ggaaagcaaaagagagaaaggggcattgagtgattgtatcgaacagatgggtgactcgatggaggagctgaggaagagtttgtcagagcttaaacatgtacgcaggggaaatgcatttaagtggcaaatgagcaatttggagacgtgggtaagtgctgctttgacaaatgaagatacatgtcttgatggattcaaggaaattgatggcaaaatcaggtctgatgtgaaacgaaagattacgaatgttgctagagttactagtaatgcactttaccttatcaatcgactggatgattctgcaaacaaaattactcatccttgatcattaattcggttaattaacattaccgggagaaataatagcgagagcttaatgcatttggttgttctttcttctttttctgcggtaactatgcattttattggttagaaaccagtattattaatggtgcaatatttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="69126" stop="68064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68826" g_stop="68363" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="474"/>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E687695" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68826" e_stop="68363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTATAAG</genome_strand>
        <mrna_strand>GGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323213" ref_strand="+" ref_description="SGN-E323213 [cTOB-28-O7]">
      <seq>gaaagcaaaagagagaaaggggcattgagtgattgtatcgaacagatgggtgactcgatggaggagctgaggaagagtttgtcagagcttaaacatgtacgcaggggaaatgcatttaagtggcaaatgagcaatttggagacgtgggtaagtgctgctttgacaaatgaagatacatgtcttgatggattcaaggaaattgatggcaaaatcaggtctgatgtgaaacgaaagattacgaatgttgctagagttactagtaatgcactttaccttatcaatcgactggatgattctgcaaacaaaattactcatccttgatcattaattcggttaattaacattaccgggagaaataatagcgagagcttaatgcatttggttgttctttcttctttttctgcggtaactatgcattttattggttagaaaccagtattattaatggtgcaatattttataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="69125" stop="68064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68825" g_stop="68363" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E323213" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68825" e_stop="68363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATA-TTTATAAG</genome_strand>
        <mrna_strand>GAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734904" ref_strand="+" ref_description="SGN-E734904 [LB13DF06]">
      <seq>aggaataaatcacagctaatccttgcccccctctctcttttttttgtctcccacataaatcataatacaatacaatactttgcttcctaccaacacatacattcacaaaaatgatgaaaactctacttgtttctctgtttctaatttcatcagtgactacatcatcatcttcttctgctagtgacattgtccgctcttcctgcgtgcacgccagctatcccacaatttgcgtcagaacactctcttcatactcggacacacccattaacaccccgcaggatttagctcaagccgcggtgaaaattaccctttctcgagcaggtaaagcgtctgggttcctgtctcgggtgaaagtggaaagcaaaagagagaaaggggcattgagtgattgtatcgaacagatgggtgactcgatggaggagctgaggaagagtttgtcagagcttaaacatgtacgcaggggaaatgcatttaagtggcaaatgagcaatttggagacgtgggtaagtgctgctttgacaaatgaagatacatgtcttgatggattcaaggaaattgatggcaaaatcaggtctgatgtgaaacgaaagattacgaatgttgctagagttactagtaatgcactttaccttatcaatcgactggatgattctgcaaacaaaattactcatccttgatcattaattcggttaattaacattaccgggagaanaaannnnanaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="69478" stop="68167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69181" g_stop="68457" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E734904" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69181" e_stop="68457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATAAATCACAGCTAATCCTTGCCCCCCTCTCTCTTTTTTTTGTCTCCCACATAAATCATAATACAATACAATACTTTGCTTCCTACCAACACATACATTCACAAAAATGATGAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAGAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGC</genome_strand>
        <mrna_strand>AGGAATAAATCACAGCTAATCCTTGCCCCCCTCTCTCTTTTTTTTGTCTCCCACATAAATCATAATACAATACAATACTTTGCTTCCTACCAACACATACATTCACAAAAATGATGAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAGAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAANAAANNNNANAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338743" ref_strand="+" ref_description="SGN-E338743 [cTOE-21-E2]">
      <seq>tccttgcccccctctcttttttttttgtctcccacataaatcataatacaatacaatactttgcttcctaccaacacatacattcacaaaaatgatgaaaactctacttgtttctctgtttctaatttcatcagtgactacatcatcatcttcttctgctagtgacattgtccgctcttcctgcgtgcacgccagctatcccacaatttgcgtcagaacactctcttcatactcggacacacccattaacaccccgcaggatttagctcaagccgcggtgaaaattaccctttctcgagcaggtaaagcgtctgggttcctgtctcgggtgaaagtggaaagcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="69462" stop="68515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69162" g_stop="68815" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E338743" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69162" e_stop="68815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGCCCCCCTCTCTCTTTTTTTTGTCTCCCACATAAATCATAATACAATACAATACTTTGCTTCCTACCAACACATACATTCACAAAAATGATGAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAGAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAG</genome_strand>
        <mrna_strand>TCCTTGCCCCCCTCTCTTTTTTTTTTGTCTCCCACATAAATCATAATACAATACAATACTTTGCTTCCTACCAACACATACATTCACAAAAATGATGAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAGAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389635" ref_strand="+" ref_description="SGN-E389635 [TUS-4-L16](-)">
      <seq>gaatttattttatttttttcaaattgagaaaatttttgttttattattatgttataccttgtatttttatattcgctgattatttgtatattgtatttattcattatttatcttgttgttggtatattatcattgcattcatggcataatattttccgtcaaacgataattatttcattttcactaaaggacgattatgcaggttcgcagtcgttcattaaccaaagattttctcgggacaccctgacgagtgtagttggctacttgatagtcaacgatcattaactgtcccaacccaagtagtccgcttggatcaccttttccactcaaaataaaacccactcctagtcaactagtgtagagccgagccaaattccgaaaatagcgccatttgaactaagatgactcaatacccaaggcgtgttgagcccattagaagaccaccttgagtctaaaacagtccactgcctaaatggacgttcatacttatgtgtttaaatttgaagggtgtatacgttgtttgagaaaatcattgtctcatagggtaaaaattaagttatagtttgcttaggttaaagaaagagcttcaccggctactagcatattcgaagatattggcacccggggatgacaacaaatcaagaaagcagaaggatctttcgtggaggcatagtttagggtcatatccctgtgtgggactgataattttgtatacatttcccctattatgatccccattcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="91035" stop="89693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90735" g_stop="89993" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E389635" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90735" e_stop="89993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTA-TTTA-TTTTTTCAAATTGAGGAAATTTTTGCTTTATTATTATGTTATACTTTGTATTTTTATATTTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCCTGTTGTGGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGACAATTATTTCATTTCCACTAAAGGACGATTATGTGGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGGCACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCGTTAACTGTCTCAGCTCAAGTAGTCCGCTTGGGTTAACTTTTCCACTATAAATACAACTCACTCCTTGTAAACTAGTGTAGAGTCGAGCAAAATCCCAAAAAATAGCG-CATTTGAACTAAGATGACCCAATACCCAAGGCGTGTTAGGTCCATTAGAAGACCACCTTGAGTCCAAAACGGCCCACGGCTTAAATGGACGTTCATACTTGTGTGTTTAAATTTGAAGGATGTATATGTTGTTTGAGAAAATCATTGTCTCATAGGATAAATATTAGATTATAGTTTGTTTAGGTTAAAGAAAGAGCTTCATCAGCTGCAAGCCTATTCGAAGATCTTAGCACCCGGATATGACAACAAATCAAGAAAGCAGAAGGATATTTCGCGGAGGCATAGTTTAGGGTCGTACCCATGTGTGAGACATATTATTTTGTATACATTTCCCCTATTATGTATCCCCATTAAGT</genome_strand>
        <mrna_strand>GAATTTATTTTATTTTTTTCAAATTGAGAAAATTTTTGTTTTATTATTATGTTATACCTTGTATTTTTATA-TTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCTTGTTGTTGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGATAATTATTTCATTTTCACTAAAGGACGATTATGCAGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGACACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCATTAACTGTCCCAACCCAAGTAGTCCGCTTGGATCACCTTTTCCACTCAAAATAAAACCCACTCCTAGTCAACTAGTGTAGAGCCGAGCCAAATTCC-GAAAATAGCGCCATTTGAACTAAGATGACTCAATACCCAAGGCGTGTTGAGCCCATTAGAAGACCACCTTGAGTCTAAAACAGTCCACTGCCTAAATGGACGTTCATACTTATGTGTTTAAATTTGAAGGGTGTATACGTTGTTTGAGAAAATCATTGTCTCATAGGGTAAAAATTAAGTTATAGTTTGCTTAGGTTAAAGAAAGAGCTTCACCGGCTACTAGCATATTCGAAGATATTGGCACCCGGGGATGACAACAAATCAAGAAAGCAGAAGGATCTTTCGTGGAGGCATAGTTTAGGGTCATATCCCTGTGTGGGACTGATAATTTTGTATACATTTCCCCTATTATG-ATCCCCATTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549958" ref_strand="+" ref_description="SGN-E549958 [TUS-5-L16]">
      <seq>gacatttattttatttttttcaaattgagaaaatttttgttttattattatgttataccttgtatttttatattcgctgattatttgtatattgtatttattcattatttatcttgttgttggtatattatcattgcattcatggcataatattttccgtcaaacgataattatttcattttcactaaaggacgattatgcaggttcgcagtcgttcattaaccaaagattttctcgggacaccctgacgagtgtagttggctacttgatagtcaacgatcattaactgtcccaacccaagtagtccgcttggatcaccttttccactcaaaataaaacccactcctagtcaactagtgtagagccgagccaaattccgaaaatagcgccatttgaactaagatgactcaatacccaaggcgtgttgagcccattagaagaccaccttgagtctaaaacagtccactgcctaaatggacgttcatacttatgtgtttaaatttgaagggtgtatacgttgtttgagaaaatcattgtctcatagggtaaaaattaagttatagtttgcttaggttaaagaaagagcttcaccggctactagcatattcgaagatattggcacccggggatgacaacaaatcaagaaagcagaaggatctttcgtggaggcatagtttagggtcatatccctgtgtgggactgattattttgtatacatttcccctattatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="91035" stop="89704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90740" g_stop="90004" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E549958" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90740" e_stop="90004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGAATTTATTTATTTTTTCAAATTGAGGAAATTTTTGCTTTATTATTATGTTATACTTTGTATTTTTATATTTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCCTGTTGTGGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGACAATTATTTCATTTCCACTAAAGGACGATTATGTGGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGGCACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCGTTAACTGTCTCAGCTCAAGTAGTCCGCTTGGGTTAACTTTTCCACTATAAATACAACTCACTCCTTGTAAACTAGTGTAGAGTCGAGCAAAATCCCAAAAAATAGCG-CATTTGAACTAAGATGACCCAATACCCAAGGCGTGTTAGGTCCATTAGAAGACCACCTTGAGTCCAAAACGGCCCACGGCTTAAATGGACGTTCATACTTGTGTGTTTAAATTTGAAGGATGTATATGTTGTTTGAGAAAATCATTGTCTCATAGGATAAATATTAGATTATAGTTTGTTTAGGTTAAAGAAAGAGCTTCATCAGCTGCAAGCCTATTCGAAGATCTTAGCACCCGGATATGACAACAAATCAAGAAAGCAGAAGGATATTTCGCGGAGGCATAGTTTAGGGTCGTACCCATGTGTGAGACATATTATTTTGTATACATTTCCCCTATTATGTAT</genome_strand>
        <mrna_strand>GACATTTATTT-TAT-TTTTTTCAAATTGAGAAAATTTTTGTTTTATTATTATGTTATACCTTGTATTTTTATA-TTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCTTGTTGTTGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGATAATTATTTCATTTTCACTAAAGGACGATTATGCAGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGACACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCATTAACTGTCCCAACCCAAGTAGTCCGCTTGGATCACCTTTTCCACTCAAAATAAAACCCACTCCTAGTCAACTAGTGTAGAGCCGAGCCAAATTCC-GAAAATAGCGCCATTTGAACTAAGATGACTCAATACCCAAGGCGTGTTGAGCCCATTAGAAGACCACCTTGAGTCTAAAACAGTCCACTGCCTAAATGGACGTTCATACTTATGTGTTTAAATTTGAAGGGTGTATACGTTGTTTGAGAAAATCATTGTCTCATAGGGTAAAAATTAAGTTATAGTTTGCTTAGGTTAAAGAAAGAGCTTCACCGGCTACTAGCATATTCGAAGATATTGGCACCCGGGGATGACAACAAATCAAGAAAGCAGAAGGATCTTTCGTGGAGGCATAGTTTAGGGTCATATCCCTGTGTGGGACTGATTATTTTGTATACATTTCCCCTATTATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389893" ref_strand="+" ref_description="SGN-E389893 [TUS-4-L16]">
      <seq>gtcttattttatttttttcaaattgagaaaatttttgttttattattatgttataccttgtatttttatattcgctgattatttgtatattgtatttattcattatttatcttgttgttggtatattatcattgcattcatggcataatattttccgtcaaacgataattatttcattttcactaaaggacgattatgcaggttcgcagtcgttcattaaccaaagattttctcgggacaccctgacgagtgtagttggctacttgatagtcaacgatcattaactgtcccaacccaagtagtccgcttggatcaccttttccactcaaaataaaacccactcctagtcaactagtgtagagccgagccaaattccgaaaatagcgccatttgaactaagatgactcaatacccaaggcgtgttgagcccattagaagaccaccttgagtctaaaacagtccactgcctaaatggacgttcatacttatgtgtttaaatttgaagggtgtatacgttgtttgagaaaatcattgtctcatagggtaaaaattaagttatagtttgcttaggttaaagaaagagcttcaccggctactagcatattcgaagatattggcacccggggatgacaacaaatcaagaaagcagaaggatctttcgtggaggcatagtttagggtcatatccctgtgtgggactgattattttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="91031" stop="89724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90735" g_stop="90024" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E389893" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90735" e_stop="90024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTATTTATTT-TTTCAAATTGAGGAAATTTTTGCTTTATTATTATGTTATACTTTGTATTTTTATATTTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCCTGTTGTGGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGACAATTATTTCATTTCCACTAAAGGACGATTATGTGGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGGCACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCGTTAACTGTCTCAGCTCAAGTAGTCCGCTTGGGTTAACTTTTCCACTATAAATACAACTCACTCCTTGTAAACTAGTGTAGAGTCGAGCAAAATCCCAAAAAATAGCG-CATTTGAACTAAGATGACCCAATACCCAAGGCGTGTTAGGTCCATTAGAAGACCACCTTGAGTCCAAAACGGCCCACGGCTTAAATGGACGTTCATACTTGTGTGTTTAAATTTGAAGGATGTATATGTTGTTTGAGAAAATCATTGTCTCATAGGATAAATATTAGATTATAGTTTGTTTAGGTTAAAGAAAGAGCTTCATCAGCTGCAAGCCTATTCGAAGATCTTAGCACCCGGATATGACAACAAATCAAGAAAGCAGAAGGATATTTCGCGGAGGCATAGTTTAGGGTCGTACCCATGTGTGAGACATATTATTTTGTAT</genome_strand>
        <mrna_strand>GTCTTATTTTATTTTTTTCAAATTGAGAAAATTTTTGTTTTATTATTATGTTATACCTTGTATTTTTATA-TTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCTTGTTGTTGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGATAATTATTTCATTTTCACTAAAGGACGATTATGCAGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGACACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCATTAACTGTCCCAACCCAAGTAGTCCGCTTGGATCACCTTTTCCACTCAAAATAAAACCCACTCCTAGTCAACTAGTGTAGAGCCGAGCCAAATTCC-GAAAATAGCGCCATTTGAACTAAGATGACTCAATACCCAAGGCGTGTTGAGCCCATTAGAAGACCACCTTGAGTCTAAAACAGTCCACTGCCTAAATGGACGTTCATACTTATGTGTTTAAATTTGAAGGGTGTATACGTTGTTTGAGAAAATCATTGTCTCATAGGGTAAAAATTAAGTTATAGTTTGCTTAGGTTAAAGAAAGAGCTTCACCGGCTACTAGCATATTCGAAGATATTGGCACCCGGGGATGACAACAAATCAAGAAAGCAGAAGGATCTTTCGTGGAGGCATAGTTTAGGGTCATATCCCTGTGTGGGACTGATTATTTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329966" ref_strand="+" ref_description="SGN-E329966 [cTOD-5-D11]">
      <seq>ctttatgagagttttaaccaatatgaatttattttatttttttcaaattgagaaaatttttgttttattattatgttataccttgtatttttatattcgctgattatttgtatattgtatttattcattatttatcttgttgttggtatattatcattgcattcatggcataatattttccgtcaaacgataattatttcattttcactaaaggacgattatgcaggttcgcagtcgttcattaaccaaagattttctcgggacaccctgacgagtgtagttggctacttgatagtcaacgatcattaactgtcccaacccaagtagtccgcttggatcaccttttccactcaaaataaaacccactcctagtcaactagtgtagagccgagccaaattccgaaaatagcgccatttgaactaagatgactcaatacccaaagcgtgttgagcccattagaagaccaccttgagtctaaaacagtccactgcctaaatggacgttcatacttatgtgtttaaatttgaagggtgtatacgttgtttgagaaaatcattgtctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="91056" stop="89896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90758" g_stop="90196" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E329966" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90758" e_stop="90196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAGAG-GTTTTAACTAATATGAATTTATT-TAT-TTTTTCAAATTGAGGAAATTTTTGCTTTATTATTATGTTATACTTTGTATTTTTATATTTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCCTGTTGTGGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGACAATTATTTCATTTCCACTAAAGGACGATTATGTGGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGGCACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCGTTAACTGTCTCAGCTCAAGTAGTCCGCTTGGGTTAACTTTTCCACTATAAATACAACTCACTCCTTGTAAACTAGTGTAGAGTCGAGCAAAATCCCAAAAAATAGCG-CATTTGAACTAAGATGACCCAATACCCAAGGCGTGTTAGGTCCATTAGAAGACCACCTTGAGTCCAAAACGGCCCACGGCTTAAATGGACGTTCATACTTGTGTGTTTAAATTTGAAGGATGTATATGTTGTTTGAGAAAATCATTGTCTCAT</genome_strand>
        <mrna_strand>CTTTATGAGAGTTTTAACCAATATGAATTTATTTTATTTTTTTCAAATTGAGAAAATTTTTGTTTTATTATTATGTTATACCTTGTATTTTTATA-TTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCTTGTTGTTGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGATAATTATTTCATTTTCACTAAAGGACGATTATGCAGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGACACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCATTAACTGTCCCAACCCAAGTAGTCCGCTTGGATCACCTTTTCCACTCAAAATAAAACCCACTCCTAGTCAACTAGTGTAGAGCCGAGCCAAATTCC-GAAAATAGCGCCATTTGAACTAAGATGACTCAATACCCAAAGCGTGTTGAGCCCATTAGAAGACCACCTTGAGTCTAAAACAGTCCACTGCCTAAATGGACGTTCATACTTATGTGTTTAAATTTGAAGGGTGTATACGTTGTTTGAGAAAATCATTGTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233763" ref_strand="+" ref_description="SGN-E233763 [cLED-14-E12]">
      <seq>aatttattttatttttttcaaattgagaaaatttttgttttattattatgttataccttgtatttttatattcgctgattatttgtatattgtatttattcattatttatcttgttgttggtatattatcattgcattcatggcataatattttccgtcaaacgataattatttcattttcactaaaggacgattatgcaggttcgcagtcgttcattaaccaaagattttctcgggacaccctgacgagtgtagttggctacttgatagtcaacgatcattaactgtcccaacccaagtagtccgcttggatcaccttttccactcaaaataaaacccactcctagtcaactagtgtagagccgagccaaattccgaaaatagcgccatttgaactaagatgactcaatacccaaggcgtgttgagcccattagaagaccaccttgagtctaaaacagtccactgcctaaatggacgttcatacttatgtgtttaaatttgnaaggtgtatacgttgtttgagaaaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="91034" stop="89903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90734" g_stop="90203" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E233763" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90734" e_stop="90203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTA-TTTA-TTTTTTCAAATTGAGGAAATTTTTGCTTTATTATTATGTTATACTTTGTATTTTTATATTTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCCTGTTGTGGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGACAATTATTTCATTTCCACTAAAGGACGATTATGTGGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGGCACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCGTTAACTGTCTCAGCTCAAGTAGTCCGCTTGGGTTAACTTTTCCACTATAAATACAACTCACTCCTTGTAAACTAGTGTAGAGTCGAGCAAAATCCCAAAAAATAGCG-CATTTGAACTAAGATGACCCAATACCCAAGGCGTGTTAGGTCCATTAGAAGACCACCTTGAGTCCAAAACGGCCCACGGCTTAAATGGACGTTCATACTTGTGTGTTTAAATTTGAAGGATGTATATGTTGTTTGAGAAAATCATT</genome_strand>
        <mrna_strand>AATTTATTTTATTTTTTTCAAATTGAGAAAATTTTTGTTTTATTATTATGTTATACCTTGTATTTTTATA-TTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCTTGTTGTTGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGATAATTATTTCATTTTCACTAAAGGACGATTATGCAGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGACACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCATTAACTGTCCCAACCCAAGTAGTCCGCTTGGATCACCTTTTCCACTCAAAATAAAACCCACTCCTAGTCAACTAGTGTAGAGCCGAGCCAAATTCC-GAAAATAGCGCCATTTGAACTAAGATGACTCAATACCCAAGGCGTGTTGAGCCCATTAGAAGACCACCTTGAGTCTAAAACAGTCCACTGCCTAAATGGACGTTCATACTTATGTGTTTAAATTTGNAAGGTGTATACGTTGTTTGAGAAAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244758" ref_strand="+" ref_description="SGN-E244758 [cLED-38-N3]">
      <seq>aatttattttatttttttcaaattgagaaaatttttgttttattattatgttataccttgtatttttatattcgctgattatttgtatattgtatttattcattatttatcttgttgttggtatattatcattgcattcatggcataatattttccgtcaaacgataattatttcattttcactaaaggacgattatgcaggttcgcagtcgttcattaaccaaagattttctcgggacaccctgacgagtgtagttggctacttgatagtcaacgatcattaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="91034" stop="90150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90734" g_stop="90450" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E244758" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90734" e_stop="90450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTA-TTTA-TTTTTTCAAATTGAGGAAATTTTTGCTTTATTATTATGTTATACTTTGTATTTTTATATTTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCCTGTTGTGGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGACAATTATTTCATTTCCACTAAAGGACGATTATGTGGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGGCACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCGTTAACT</genome_strand>
        <mrna_strand>AATTTATTTTATTTTTTTCAAATTGAGAAAATTTTTGTTTTATTATTATGTTATACCTTGTATTTTTATA-TTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCTTGTTGTTGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGATAATTATTTCATTTTCACTAAAGGACGATTATGCAGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGACACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCATTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744421" ref_strand="+" ref_description="SGN-E744421 [GI|399650]">
      <seq>aattctgctttgcttcttgcccaattcctcaagataatctgccatccatatcatctctttcccagcttcagctattgccacaaactcagctttagtggatgaaagagaaacatacttctaaagacacggacatccaacttactgcttttccacctatggtgtaaatgtacccggacgtactcttgctcgagtcaacatccccaccaagatcagcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="95690" stop="96505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95988" g_stop="96205" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E744421" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95988" e_stop="96205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCGCTCTGCTTCTTGCCCAATTCCTCAAGATAATCTGTCAGCCATATCATCTCTTTCCCAACTTCAGCTATTGCCACATACTCAGCTTCAGTAGATGAAAGAGAAACACACTTCTGAAG-CCTGGACATCCAACTCACTGTTGTTCCACCTATGGTGTAAATGTACCCGGATGTACTCTTGCTCGATTCAACATCCCCACCAAGATCAGCATCC</genome_strand>
        <mrna_strand>AATTCT-GCTTTGCTTCTTGCCCAATTCCTCAAGATAATCTGCCATCCATATCATCTCTTTCCCAGCTTCAGCTATTGCCACAAACTCAGCTTTAGTGGATGAAAGAGAAACATACTTCTAAAGACACGGACATCCAACTTACTGCTTTTCCACCTATGGTGTAAATGTACCCGGACGTACTCTTGCTCGAGTCAACATCCCCACCAAGATCAGCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715516" ref_strand="+" ref_description="SGN-E715516 [FB14CA10]">
      <seq>gtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttccccttctacattcttttcctgcctctagccaataaagttcttgtactttttctgccactaatgtgtgccaattgtatgttatctgataggctgtacaacgacttatatttcatagatgccaaaggagctgttagtttaaagtcattctacaatttatgttgtagaatgttgaactcggtctcccgcgagagataaatttgtatatgggcctttgctatggttgtagtaactgcataatggagaattttcttcnnnanaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaanaancccttgggggggggggggggaccccttttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="122987" stop="13481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122687" g_stop="122643" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="135" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121084" g_stop="120596" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="624" r_length="489" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120595" i_stop="118892" i_length="1704">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.981" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118891" g_stop="118847" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="669" r_length="45" r_score="0.556"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118846" i_stop="115168" i_length="3679">
            <donor d_prob="0.382" d_score="0.56"/>
            <acceptor a_prob="0.362" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115167" g_stop="115141" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="696" r_length="27" r_score="0.519"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E715516" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122687" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120596"/>
          <exon e_start="118891" e_stop="118847"/>
          <exon e_start="115167" e_stop="115141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTGTAAATGAGAATGGAGTCACTTGTGATGATCTTGAAATATTAATCTTTATTCATTACTTTTACTGATAAAAATAGAAGTTCTAAGTCATAAGCTGAGGTATTTAACATTTGTGGATACCTTGCTTGACCTTTCATACATGTATGTTTATTCCTTAAAATGAGTAGATAAATATACTGTATAAGCACTAGGTATAGAAGAAATAATAAGTTAATTAAGTAGGAAAGTTTCAAATGTTATTGAGTGAAGCTACTTCTCCTCTGCATAATCTTGGCTGTTGTAGGGGCTAAAGGCTTCAGCCAACCAGTTCGTCTTCCTCCAAACTTGCCATCCCATCTCTTGGCAGATTTCATCGCTATGGTTAATACTGAAAGTGGAAATGCAATTTCTCTTGTAGAATCTTGTCGTCCTCTTCATAATCTCCATCTCTTGTGTTATCTGTTCAAGCATTTTCTCAACAGATGGAAGCTTAAACAGATCATCAACAAGTCGTGATAGCCATATGCAACGTATCTCAGCTGAATGCAGGTTTGAAACACTTTCAAGGTAACCCACGAAAGCCATATTTGGTATCAACGGGTGGATTGTACCCCTGTACAAGGGTATCATGCCTGAGGGGAACTCTACCAGACTGCGAAAGGGATCAGGTAATATAGCTTTAATCTTTTTCTTCCCATCAAAACCAGTTGCAAGTATGACAACATCAGCTTCCAACTTGGTGTTGTCCTCGAATTCAACGCCTCCTTCCCAGAACCACCACTTGGATGTTCTTTTGAACATGATTTTTCCCTTATCCGCCTCAGTGAAGAAATTCTCAGGCAAGATAGCCATCTGACATGATGCATAATCTTCCTCAAAAGGGTGTTCTGGTTTCAGTCCATACTTCTCTAGTGGAAGTTTCCATTCCAAATACGACTCGATTAACTTAGAAGCTGCTTTTCTCTGTCACCATATGTATAAGCGCGCTTTTGTTAGTCCTACGCCAAATGATGCACTAGATTGAAAAAGAAAAAAAAGAATGGAGCTCACCATGGGAGAAAGCATGTGGCAAAGAAGGGTCCTAAACAATCCTTGATTGGGTCTTTCATGGAGAAACTGAGAAGATCTAGTTGAATAGAACAAGTAGAATGGTAAACCCCAAATAGAGTAATGTGGAACTGTCCAATGCAAAGTCCTTACAACCATTGTACAGGGTTGCCCTTCAGGTCCTACAAACAAATTAATGTGTAGCGTTTGTTTGGCTCAAATTATAGAATTTGTATTGAAAATTTATTAAATTATGATTCAAAATTTATAACTCGGACGGTTTTCAATTCTATGTGAAAAAAACTTCTATCTGTGATGTTATCTTGAGGTCAAAGCATGAGACTTGAGATAACAAAAAGGTGTTTTTGACATTTAGATAAAAATCAAGTTTCTTTTTTTCCTTATTTTGGTGACATTTTCATTGAAAAAAAAAACAAATATAATTGTGAAGTTGACCATCATGATGTATGTTTGTAGTTTGGTAAATCAATATATGCACTTTCAATTTTCTAAAAGAATAGTACTACTGATGTGAACAATCACAATTTATTTTCCTTTTATGGATTTAGACAAATCAACTTCTGCCTGTTTTTGGAAATTTATTTTTTGTTGTAACAATTATTATTAGGAACCACACAAACAAACAAACAATCAATAGATGGGAAGCCCCTTCGTATCCAAATTGGCTTAAATATATACAGTTGAAAAATAGTCTATTATGATGAATTCGCTACTAGTTAAAAATAAATAAACATAAATTACCAAGTCTATTTTAAAGATAATACATTCCAATTGCCTTCCTGACGTGTGACAATCCCATTTTAGACTATCATAAATTGTTATAACATAGTATACTTTAAGATATTTAAAATTCAATACACTAGGTTAATTAATTAATTAAGAAGGATCGTATACTTTGACTTATAAGGAATTACTAGTAATTAATTAATTACCTTGATTAGCTTCAGCACATTCCACTGCAAGATCAATAGCTGATTTTTTATAGCCAACAACAACAACTTTCTTCCCTTTCATAAGTTTAGTAGATGCTTCTTGGTCAAGTTTAGAGTAATCAAGGGTATGAAGAACTTGACCATTAAACTCTTTTGGCCCTTTTTTTGGTGGAAAATTTGGTATATTTGGGATATCTCCATATTTACCAGTGCACATCACCACAAAATCAAATGCATACCACTGATTAAAAAAAAAAAAAACCTAAGAATATCGAAATTTGAATTGTTTCACATAAAACTATATTGAGAAAAAAAAGAGAACCTGTAGAGTTTGAGATTGATTGTTACGAACAGCAACTTCCCAAACAGGATTGCCAGTCAATAAACTTCCATATTCACCAAAATAATTCATTTCTCGATCACCTACAAACTTAATTTCCACAACCTTAGAGTTGAAGTTGAAGAATTTCAAGACATCAAAATGTTTAGCATAAGAATACAAGTAGTCTAATATTTCCTCATAAGTAGGGAAATTTGTGTTATCCCTTTGAGTCCATGGAAAATCAGAAAACTCATAATCACATCGAGGGGTTTGCAATTTTGTGGACCTATAAGAACAGTGTTTCCACACCCCTCCTACACACTCCGTTGCCTCAAACACCATTGGATCGTACTTGGCTAGTTGTTTAGCGGCTGCTATGCCACTTATTCCACCACCAATTATTCCGATTTTCGAGCGGATAATAGCCATATCTATCTCAAGTAAATCAAAGTAGAAATTTGAAGTGTGTTTGTATAAGTAAATATTTCTCAAAGATGGGATGGTTTAGAAGTGGTGATATAAGGTGGTATTTATAGGAGTTTGCATGAGATGTGAAATGAATGGCACGTGATTAGACTAATTCTAACGAGGAATCCTAAACATGTTAGCTATAACTTAAGTTGCACGTACTTTTCACTTTTGATACAGTATTAGTATCAAATTTTTCAAAATTACATTATTTTAAAACAATCTGACATAATATTTTTGAAAAGTCTGAGCGACATAAGCTACTAGTAAAGATAAATTAATTTATATACCGTTAGTAGTGTACAAAATATTTATACTGTCAAATTATTCAAGTAATGTGAAATTTGTAAATTTAAGTATAAAAATTTGTAATACGAGAGATTGTTATAACTTAAAACTTATTAATTTATACTAAATGAATAATTAGAGATTAATAAATACTCCAACATATAATATAGTTTAAGATTTGGTTGACCTTTGCCTCCTTGGCTAAATTTTATTGTATTATTGTACTAGTATCGTTGTTATGGGAAGTTTGTTGGTTATGAAAAGGAAATTTCATGTTGGTCAAATACATATTCAATTTGCTTAATTAATTCTAAAACCATGTGTATCTGTTAAACTTCATTGCATCTTTCGACCTTTTATTTAGCATCTGACTTTTGGAGAATTCCACAGCTGGTTGGGAGATCAAATTTGCTGCCTAATTCAGTACATTTTGTCATATTTATTGAAATATGTCTATACTATTCGAACAATTATACTCCCTCATTCTATACGAGTTATCTAGGTTATTAAAAATATTCGTCATCATATTTTATAAAATCAAGAGTAATTAATTTTGTCCAACTTCTCCCTTAATATTGACACTTTATTTGAATGGTTGTTATGTATTATCTCATACTACCGATCAAAACAGGAATTACTCCCCTGCACATTTTTATCTATCCACAATATCACCTTTTTTTTTAAAATTGGAATTAATAAAAGTGAATGGAGTGAGTATAAATTTGAAAAACTCACACTAGCGATTAGAAATAATTTTAACACTACCCCACCATCGATCAATGTTTTATAAATCAATTTCATCCCTCAACTTTGAATAAGAGACATTCTGTCTCGACCTTCGATCCCTCTCGAAATGTTTGTATTACTTATAGTATTTTCGCTCGCCATCAATGTGATACCTTTTATTATAGATTTTTATTTAAATTTGTTATCATTATAACTAGAATAATCTATTGTTATGAATTTGTTACAAAATCTAATGCAACTATTTTATGATTTTTATTTTAGTATTACATTTATTGAGTATATGTATAGTAATATATACGTATCTCGGTATTGACTTGACAGTATTATAAAGAGCATAATTTTTTTGGAAGTATAAATAATTAAAGATGAAACGTGTATACTAGTATTATACATGAGTAAAACAGAAAGTCACACAACTCCTTTTTATATCATATGAAATACAATACTTTTATCTTTTCTTATTTTATATGATAGAGTTTTGCTAGGAAACTTTTTCGAGTGTTTATTTTGACTATATATTAAACAATAGTATAGGGTACATTTGAAAATTTCGTTCAAGAGAGAAAGTCATTTTTTAATATATTTGCCAAGTGAAATTTTGTTAGATCAAAATGATGTTAGTTGAATGTGATTGTTGTACCATTGGTGAAGAAGGATGGCTCCTCCTTTCATTTGAAGTTTTGGATTTAATTTTTGTGTTTTGTATATGAAATTTTATTGGATAAGGAACATTTTGTTCTTAAGTGAACCTTGTCCATAGTAAATTTACCAAAATGATTTTTAGAGATACTTAAAGTAAAATATTAAAATTTATGACGATATTAGATTTAATGACAATTAAGTAATAATATCAATAAAAATTTTAATATTCTTTTTTAATATGTATATTTGTTATGGTTAAAAAAATATTTTTATTATTGTATAATATCGAAGACCAAGTGAAAATAAAATAAATAAATATTATTTGTTGCGTCTGAGTTTTTTTATTTGATGATTTATTTTTTCACAAAGCTTAATGAAGACGGAAAAATAAGTATAGTGCCAAATCCGTATGCCTTAACCCCTAAATTAGCATTCAAATTATTATTTATTTGTTCTAACTAATAATATCTTACAAACTGGGACAAAGAAAATTCTTTAAAGAAAAGTAAAATTATCAAGAATAATTTCGAAGTCGAAGGAGTGTGAGCTGGCCAATCACAACAAGCCGTGTGTTTGTGTGTGCTTTGTGCTGCTTATTCTTAATTTTGGCCCCCTCTTAGCTTAAGCATCAGATAATATTTTTATTTATTTGGGAAAATGCACAAGTACCCCCTCAACCTATGTCCGAAATCTCAGAGATATACTTGTACTATATTAAGGTTCTATTACCCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTTAACCTACGTGGCACTAGTTTGAAAAAAAAAAGTCAACCATCGTTGGACCCACAAGATAGTGCCACGTAGGCTAAAAAGGGGTAAAAAATTATTAATAGAATAAGTTCAAGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGGGCATAGGTTGAGGGGTAGTTGGGCATTATCCCT</genome_strand>
        <mrna_strand>GTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCNNNAN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANCCCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGGGGGGGGGGACCCCTTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221449" ref_strand="+" ref_description="SGN-E221449 [cLEL-10-H17](-)">
      <seq>agaatggagtggttcaactcataataataatcagttccaacctgaaaagcatattgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttcccattatacattcttttcctgcctctagccaataaagttcttggactttttctgccactaatgtgtgccaaatgtatgttatctgataggctgtacaacgacctatatttcatagatgccaaaggagctgttagtttaaagtcattctacaatttatgttgtagaatgttgaacaaggtctcccgcgagagataaatttgtatatgggcctatggtatggttgtagtaactgcataatggagaattttcttcaaaaaaaaaaaaaaaaatggattctctcgtgatagtcggaacctttttattatctactcactcaaatgacatcgcaattttaactgtaactgtttgatcttctgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="121254" stop="13949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120954" g_stop="120600" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120599" i_stop="119548" i_length="1052">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.022" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119547" g_stop="119499" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="400" r_length="46" r_score="0.571"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119498" i_stop="117820" i_length="1679">
            <donor d_prob="0.964" d_score="0.57"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117819" g_stop="117805" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="414" r_length="14" r_score="0.667"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117804" i_stop="115731" i_length="2074">
            <donor d_prob="0.877" d_score="0.00"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115730" g_stop="115693" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="453" r_length="39" r_score="0.474"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115692" i_stop="115314" i_length="379">
            <donor d_prob="0.830" d_score="0.00"/>
            <acceptor a_prob="0.268" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115313" g_stop="115292" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="475" r_length="22" r_score="0.682"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E221449" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120954" e_stop="120600"/>
          <exon e_start="119547" e_stop="119499"/>
          <exon e_start="117819" e_stop="117805"/>
          <exon e_start="115730" e_stop="115693"/>
          <exon e_start="115313" e_stop="115292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTGTAAATGAGAATGGAGTCACTTGTGATGATCTTGAAATATTAATCTTTATTCATTACTTTTACTGATAAAAATAGAAGTTCTAAGTCATAAGCTGAGGTATTTAACATTTGTGGATACCTTGCTTGACCTTTCATACATGTATGTTTATTCCTTAAAATGAGTAGATAAATATACTGTATAAGCACTAGGTATAGAAGAAATAATAAGTTAATTAAGTAGGAAAGTTTCAAATGTTATTGAGTGAAGCTACTTCTCCTCTGCATAATCTTGGCTGTTGTAGGGGCTAAAGGCTTCAGCCAACCAGTTCGTCTTCCTCCAAACTTGCCATCCCATCTCTTGGCAGATTTCATCGCTATGGTTAATACTGAAAGTGGAAATGCAATTTCTCTTGTAGAATCTTGTCGTCCTCTTCATAATCTCCATCTCTTGTGTTATCTGTTCAAGCATTTTCTCAACAGATGGAAGCTTAAACAGATCATCAACAAGTCGTGATAGCCATATGCAACGTATCTCAGCTGAATGCAGGTTTGAAACACTTTCAAGGTAACCCACGAAAGCCATATTTGGTATCAACGGGTGGATTGTACCCCTGTACAAGGGTATCATGCCTGAGGGGAACTCTACCAGACTGCGAAAGGGATCAGGTAATATAGCTTTAATCTTTTTCTTCCCATCAAAACCAGTTGCAAGTATGACAACATCAGCTTCCAACTTGGTGTTGTCCTCGAATTCAACGCCTCCTTCCCAGAACCACCACTTGGATGTTCTTTTGAACATGATTTTTCCCTTATCCGCCTCAGTGAAGAAATTCTCAGGCAAGATAGCCATCTGACATGATGCATAATCTTCCTCAAAAGGGTGTTCTGGTTTCAGTCCATACTTCTCTAGTGGAAGTTTCCATTCCAAATACGACTCGATTAACTTAGAAGCTGCTTTTCTCTGTCACCATATGTATAAGCGCGCTTTTGTTAGTCCTACGCCAAATGATGCACTAGATTGAAAAAGAAAAAAAAGAATGGAGCTCACCATGGGAGAAAGCATGTGGCAAAGAAGGGTCCTAAACAATCCTTGATTGGGTCTTTCATGGAGAAACTGAGAAGATCTAGTTGAATAGAACAAGTAGAATGGTAAACCCCAAATAGAGTAATGTGGAACTGTCCAATGCAAAGTCCTTACAACCATTGTACAGGGTTGCCCTTCAGGTCCTACAAACAAATTAATGTGTAGCGTTTGTTTGGCTCAAATTATAGAATTTGTATTGAAAATTTATTAAATTATGATTCAAAATTTATAACTCGGACGGTTTTCAATTCTATGTGAAAAAAACTTCTATCTGTGATGTTATCTTGAGGTCAAAGCATGAGACTTGAGATAACAAAAAGGTGTTTTTGACATTTAGATAAAAATCAAGTTTCTTTTTTTCCTTATTTTGGTGACATTTTCATTGAAAAAAAAAACAAATATAATTGTGAAGTTGACCATCATGATGTATGTTTGTAGTTTGGTAAATCAATATATGCACTTTCAATTTTCTAAAAGAATAGTACTACTGATGTGAACAATCACAATTTATTTTCCTTTTATGGATTTAGACAAATCAACTTCTGCCTGTTTTTGGAAATTTATTTTTTGTTGTAACAATTATTATTAGGAACCACACAAACAAACAAACAATCAATAGATGGGAAGCCCCTTCGTATCCAAATTGGCTTAAATATATACAGTTGAAAAATAGTCTATTATGATGAATTCGCTACTAGTTAAAAATAAATAAACATAAATTACCAAGTCTATTTTAAAGATAATACATTCCAATTGCCTTCCTGACGTGTGACAATCCCATTTTAGACTATCATAAATTGTTATAACATAGTATACTTTAAGATATTTAAAATTCAATACACTAGGTTAATTAATTAATTAAGAAGGATCGTATACTTTGACTTATAAGGAATTACTAGTAATTAATTAATTACCTTGATTAGCTTCAGCACATTCCACTGCAAGATCAATAGCTGATTTTTTATAGCCAACAACAACAACTTTCTTCCCTTTCATAAGTTTAGTAGATGCTTCTTGGTCAAGTTTAGAGTAATCAAGGGTATGAAGAACTTGACCATTAAACTCTTTTGGCCCTTTTTTTGGTGGAAAATTTGGTATATTTGGGATATCTCCATATTTACCAGTGCACATCACCACAAAATCAAATGCATACCACTGATTAAAAAAAAAAAAAACCTAAGAATATCGAAATTTGAATTGTTTCACATAAAACTATATTGAGAAAAAAAAGAGAACCTGTAGAGTTTGAGATTGATTGTTACGAACAGCAACTTCCCAAACAGGATTGCCAGTCAATAAACTTCCATATTCACCAAAATAATTCATTTCTCGATCACCTACAAACTTAATTTCCACAACCTTAGAGTTGAAGTTGAAGAATTTCAAGACATCAAAATGTTTAGCATAAGAATACAAGTAGTCTAATATTTCCTCATAAGTAGGGAAATTTGTGTTATCCCTTTGAGTCCATGGAAAATCAGAAAACTCATAATCACATCGAGGGGTTTGCAATTTTGTGGACCTATAAGAACAGTGTTTCCACACCCCTCCTACACACTCCGTTGCCTCAAACACCATTGGATCGTACTTGGCTAGTTGTTTAGCGGCTGCTATGCCACTTATTCCACCACCAATTATTCCGATTTTCGAGCGGATAATAGCCATATCTATCTCAAGTAAATCAAAGTAGAAATTTGAAGTGTGTTTGTATAAGTAAATATTTCTCAAAGATGGGATGGTTTAGAAGTGGTGATATAAGGTGGTATTTATAGGAGTTTGCATGAGATGTGAAATGAATGGCACGTGATTAGACTAATTCTAACGAGGAATCCTAAACATGTTAGCTATAACTTAAGTTGCACGTACTTTTCACTTTTGATACAGTATTAGTATCAAATTTTTCAAAATTACATTATTTTAAAACAATCTGACATAATATTTTTGAAAAGTCTGAGCGACATAAGCTACTAGTAAAGATAAATTAATTTATATACCGTTAGTAGTGTACAAAATATTTATACTGTCAAATTATTCAAGTAATGTGAAATTTGTAAATTTAAGTATAAAAATTTGTAATACGAGAGATTGTTATAACTTAAAACTTATTAATTTATACTAAATGAATAATTAGAGATTAATAAATACTCCAACATATAATATAGTTTAAGATTTGGTTGACCTTTGCCTCCTTGGCTAAATTTTATTGTATTATTGTACTAGTATCGTTGTTATGGGAAGTTTGTTGGTTATGAAAAGGAAATTTCATGTTGGTCAAATACATATTCAATTTGCTTAATTAATTCTAAAACCATGTGTATCTGTTAAACTTCATTGCATCTTTCGACCTTTTATTTAGCATCTGACTTTTGGAGAATTCCACAGCTGGTTGGGAGATCAAATTTGCTGCCTAATTCAGTACATTTTGTCATATTTATTGAAATATGTCTATACTATTCGAACAATTATACTCCCTCATTCTATACGAGTTATCTAGGTTATTAAAAATATTCGTCATCATATTTTATAAAATCAAGAGTAATTAATTTTGTCCAACTTCTCCCTTAATATTGACACTTTATTTGAATGGTTGTTATGTATTATCTCATACTACCGATCAAAACAGGAATTACTCCCCTGCACATTTTTATCTATCCACAATATCACCTTTTTTTTTAAAATTGGAATTAATAAAAGTGAATGGAGTGAGTATAAATTTGAAAAACTCACACTAGCGATTAGAAATAATTTTAACACTACCCCACCATCGATCAATGTTTTATAAATCAATTTCATCCCTCAACTTTGAATAAGAGACATTCTGTCTCGACCTTCGATCCCTCTCGAAATGTTTGTATTACTTATAGTATTTTCGCTCGCCATCAATGTGATACCTTTTATTATAGATTTTTATTTAAATTTGTTATCATTATAACTAGAATAATCTATTGTTATGAATTTGTTACAAAATCTAATGCAACTATTTTATGATTTTTATTTTAGTATTACATTTATTGAGTATATGTATAGTAATATATACGTATCTCGGTATTGACTTGACAGTATTATAAAGAGCATAATTTTTTTGGAAGTATAAATAATTAAAGATGAAACGTGTATACTAGTATTATACATGAGTAAAACAGAAAGTCACACAACTCCTTTTTATATCATATGAAATACAATACTTTTATCTTTTCTTATTTTATATGATAGAGTTTTGCTAGGAAACTTTTTCGAGTGTTTATTTTGACTATATATTAAACAATAGTATAGGGTACATTTGAAAATTTCGTTCAAGAGAGAAAGTCATTTTTTAATATATTTGCCAAGTGAAATTTTGTTAGATCAAAATGATGTTAGTTGAATGTGATTGTTGTACCATTGGTGAAGAAGGATGGCTCCTCCTTTCATTTGAAGTTTTGGATTTAATTTTTGTGTTTTGTATATGAAATTTTATTGGATAAGGAACATTTTGTTCTTAAGTGAACCTTGTCCATAGTAAATTTACCAAAATGATTTTTAGAGATACTTAAAGTAAAATATTAAAATTTATGACGATATTAGATTTAATGACAATTAAGTAATAATATCAATAAAAATTTTAATATTCTTTTTTAATATGTATATTTGTTATGGTTAAAAAAATATTTTTATTATTGTATAATATCGAAGACCAAGTGAAAATAAAATAAATAAATATTATTTGTTGCGTCTGAGTTTTTTTATTTGATGATTTATTTTTTCACAAAGCTTAATGAAGACGGAAAAATAAGTAT-AGTGCCAAATCCGTATGCCTTAACCCCTAAATTAGCATTCAAATTATTATTTATTTGTTCTAACTAATAATATCTTACAAACTGGGACAAAGAAAATTCTTTAAAGAAAAGTAAAATTATCAAGAATAATTTCGAAGTCGAAGGAGTGTGAGCTGGCCAATCACAACAAGCCGTGTGTTTGTGTGTGCTTTGTGCTGCTTATTCTTAATTTTGGCCCCCTCTTAGCTTAAGCATCAGATAATATTTTTATTTATTTGGGAAAATGCACAAGTACCCCCTCAACCTATGTCCGAAATCTCAGAGATATACTTGTACTATATTAAGGTTCTATTACCCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTTAACCTACGTGGCACTAGTTTGAAAAAAAAAAGTCAACCA</genome_strand>
        <mrna_strand>AGAATGGAGTGGTTCAACTCATA-ATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCATTATACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGGACTTTTTCTGCCACTAATGTGTGCCAAATGTATGTTATCTGATAGGCTGTACAACGACCTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACAAGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTATGGTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAAAAAAAAAAAAAATGGAT-TCTCTCGTGATAGTCGGAA-CCTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATCTA-CTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATGACATCGCAATTTTAACTGTAACTGTTTGATCT...........................................................................................................................................................................................................................................................................................................................................................................................TCTGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543814" ref_strand="+" ref_description="SGN-E543814 [TUS-65-N5]">
      <seq>caatctcaaactctacagtggtatgcatttgattttgtggtgatgtgcactggtaaatatggagatatcccaaatataccaaattttccaccaaaaaaagggccaaaagagtttaatggtcaagttcttcatacccttgattactctaaacttgaccaagaagcatctactaaacttatgaaagggaagaaagttgttgttgttggctataaaaaatcagctattgatcttgcagtggaatgtgctgaagctaatcaaggacctgaagggcaaccctgtacaatggttgtaaggactttgcattggacagttccacattactctatttggggtttaccattctacttgttctattcaactagatcttctcagtttctccatgaaagacccaatcaaggattgtttaggacccttctttgccacatgctttctcccatgagaaaagcagcttctaagttaatcgagtcgtatttggaatggaaacttccactagagaagtatggactgaaaccagaacacccttttgaggaagattatgcatcatgtcagatggctatcttgcctgagaatttcttcactgaggcggataagggaaaaatcatgttcaaaagaacatccaagtggtggttctgggaaggaggcgttgaattcgaggacaacaccaagttggaagctgatgttgtcatacttgcaactggttttgatgggaagaaaagattaaagctatattacctgatccctttcgcagtctggtagagttcccctcaggcatgataccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="118017" stop="120246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118227" g_stop="118244" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118245" i_stop="118325" i_length="81">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118326" g_stop="118566" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="259" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118567" i_stop="119337" i_length="771">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119338" g_stop="119516" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="438" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119517" i_stop="119603" i_length="87">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119604" g_stop="119946" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="780" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E543814" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118227" e_stop="118244"/>
          <exon e_start="118326" e_stop="118566"/>
          <exon e_start="119338" e_stop="119516"/>
          <exon e_start="119604" e_stop="119946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTCAAACTCTACAGGTTCTCTTTTTTTTCTCAATATAGTTTTATGTGAAACAATTCAAATTTCGATATTCTTAGGTTTTTTTTTTTTTTAATCAGTGGTATGCATTTGATTTTGTGGTGATGTGCACTGGTAAATATGGAGATATCCCAAATATACCAAATTTTCCACCAAAAAAAGGGCCAAAAGAGTTTAATGGTCAAGTTCTTCATACCCTTGATTACTCTAAACTTGACCAAGAAGCATCTACTAAACTTATGAAAGGGAAGAAAGTTGTTGTTGTTGGCTATAAAAAATCAGCTATTGATCTTGCAGTGGAATGTGCTGAAGCTAATCAAGGTAATTAATTAATTACTAGTAATTCCTTATAAGTCAAAGTATACGATCCTTCTTAATTAATTAATTAACCTAGTGTATTGAATTTTAAATATCTTAAAGTATACTATGTTATAACAATTTATGATAGTCTAAAATGGGATTGTCACACGTCAGGAAGGCAATTGGAATGTATTATCTTTAAAATAGACTTGGTAATTTATGTTTATTTATTTTTAACTAGTAGCGAATTCATCATAATAGACTATTTTTCAACTGTATATATTTAAGCCAATTTGGATACGAAGGGGCTTCCCATCTATTGATTGTTTGTTTGTTTGTGTGGTTCCTAATAATAATTGTTACAACAAAAAATAAATTTCCAAAAACAGGCAGAAGTTGATTTGTCTAAATCCATAAAAGGAAAATAAATTGTGATTGTTCACATCAGTAGTACTATTCTTTTAGAAAATTGAAAGTGCATATATTGATTTACCAAACTACAAACATACATCATGATGGTCAACTTCACAATTATATTTGTTTTTTTTTTCAATGAAAATGTCACCAAAATAAGGAAAAAAAGAAACTTGATTTTTATCTAAATGTCAAAAACACCTTTTTGTTATCTCAAGTCTCATGCTTTGACCTCAAGATAACATCACAGATAGAAGTTTTTTTCACATAGAATTGAAAACCGTCCGAGTTATAAATTTTGAATCATAATTTAATAAATTTTCAATACAAATTCTATAATTTGAGCCAAACAAACGCTACACATTAATTTGTTTGTAGGACCTGAAGGGCAACCCTGTACAATGGTTGTAAGGACTTTGCATTGGACAGTTCCACATTACTCTATTTGGGGTTTACCATTCTACTTGTTCTATTCAACTAGATCTTCTCAGTTTCTCCATGAAAGACCCAATCAAGGATTGTTTAGGACCCTTCTTTGCCACATGCTTTCTCCCATGGTGAGCTCCATTCTTTTTTTTCTTTTTCAATCTAGTGCATCATTTGGCGTAGGACTAACAAAAGCGCGCTTATACATATGGTGACAGAGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGGAATGGAAACTTCCACTAGAGAAGTATGGACTGAAACCAGAACACCCTTTTGAGGAAGATTATGCATCATGTCAGATGGCTATCTTGCCTGAGAATTTCTTCACTGAGGCGGATAAGGGAAAAATCATGTTCAAAAGAACATCCAAGTGGTGGTTCTGGGAAGGAGGCGTTGAATTCGAGGACAACACCAAGTTGGAAGCTGATGTTGTCATACTTGCAACTGGTTTTGATGGGAAGAAAAAGATTAAAGCTATATTACCTGATCCCTTTCGCAGTCTGGTAGAGTTCCCCTCAGGCATGATACCCT</genome_strand>
        <mrna_strand>CAATCTCAAACTCTACAG.................................................................................TGGTATGCATTTGATTTTGTGGTGATGTGCACTGGTAAATATGGAGATATCCCAAATATACCAAATTTTCCACCAAAAAAAGGGCCAAAAGAGTTTAATGGTCAAGTTCTTCATACCCTTGATTACTCTAAACTTGACCAAGAAGCATCTACTAAACTTATGAAAGGGAAGAAAGTTGTTGTTGTTGGCTATAAAAAATCAGCTATTGATCTTGCAGTGGAATGTGCTGAAGCTAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGAAGGGCAACCCTGTACAATGGTTGTAAGGACTTTGCATTGGACAGTTCCACATTACTCTATTTGGGGTTTACCATTCTACTTGTTCTATTCAACTAGATCTTCTCAGTTTCTCCATGAAAGACCCAATCAAGGATTGTTTAGGACCCTTCTTTGCCACATGCTTTCTCCCATG.......................................................................................AGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGGAATGGAAACTTCCACTAGAGAAGTATGGACTGAAACCAGAACACCCTTTTGAGGAAGATTATGCATCATGTCAGATGGCTATCTTGCCTGAGAATTTCTTCACTGAGGCGGATAAGGGAAAAATCATGTTCAAAAGAACATCCAAGTGGTGGTTCTGGGAAGGAGGCGTTGAATTCGAGGACAACACCAAGTTGGAAGCTGATGTTGTCATACTTGCAACTGGTTTTGATGGGAAG-AAAAGATTAAAGCTATATTACCTGATCCCTTTCGCAGTCTGGTAGAGTTCCCCTCAGGCATGATACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548941" ref_strand="+" ref_description="SGN-E548941 [TUS-65-N9]">
      <seq>caatctcaaactctacagtggtatgcatttgattttgtggtgatgtgcactggtaaatatggagatatcccaaatataccaaattttccaccaaaaaaagggccaaaagagtttaatggtcaagttcttcatacccttgattactctaaacttgaccaagaagcatctactaaacttatgaaagggaagaaagttgttgttgttggctataaaaaatcagctattgatcttgcagtggaatgtgctgaagctaatcaaggacctgaagggcaaccctgtacaatggttgtaaggactttgcattggacagttccacattactctatttggggtttaccattctacttgttctattcaactagatcttctcagtttctccatgaaagacccaatcaaggattgtttaggacccttctttgccacatgctttctcccatgagaaaagcagcttctaagttaatcgagtcgtatttggaatggaaacttccactagagaagtatggactgaaaccagaacacccttttgaggaagattatgcatcatgtcagatggctatcttgcctgagaatttcttcactgaggcggataagggaaaaatcatgttcaaaagaacatccaagtggtggttctgggaaagaggcgttgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="118017" stop="120116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118227" g_stop="118244" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118245" i_stop="118325" i_length="81">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118326" g_stop="118566" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="259" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118567" i_stop="119337" i_length="771">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119338" g_stop="119516" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="438" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119517" i_stop="119603" i_length="87">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119604" g_stop="119816" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="651" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E548941" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118227" e_stop="118244"/>
          <exon e_start="118326" e_stop="118566"/>
          <exon e_start="119338" e_stop="119516"/>
          <exon e_start="119604" e_stop="119816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTCAAACTCTACAGGTTCTCTTTTTTTTCTCAATATAGTTTTATGTGAAACAATTCAAATTTCGATATTCTTAGGTTTTTTTTTTTTTTAATCAGTGGTATGCATTTGATTTTGTGGTGATGTGCACTGGTAAATATGGAGATATCCCAAATATACCAAATTTTCCACCAAAAAAAGGGCCAAAAGAGTTTAATGGTCAAGTTCTTCATACCCTTGATTACTCTAAACTTGACCAAGAAGCATCTACTAAACTTATGAAAGGGAAGAAAGTTGTTGTTGTTGGCTATAAAAAATCAGCTATTGATCTTGCAGTGGAATGTGCTGAAGCTAATCAAGGTAATTAATTAATTACTAGTAATTCCTTATAAGTCAAAGTATACGATCCTTCTTAATTAATTAATTAACCTAGTGTATTGAATTTTAAATATCTTAAAGTATACTATGTTATAACAATTTATGATAGTCTAAAATGGGATTGTCACACGTCAGGAAGGCAATTGGAATGTATTATCTTTAAAATAGACTTGGTAATTTATGTTTATTTATTTTTAACTAGTAGCGAATTCATCATAATAGACTATTTTTCAACTGTATATATTTAAGCCAATTTGGATACGAAGGGGCTTCCCATCTATTGATTGTTTGTTTGTTTGTGTGGTTCCTAATAATAATTGTTACAACAAAAAATAAATTTCCAAAAACAGGCAGAAGTTGATTTGTCTAAATCCATAAAAGGAAAATAAATTGTGATTGTTCACATCAGTAGTACTATTCTTTTAGAAAATTGAAAGTGCATATATTGATTTACCAAACTACAAACATACATCATGATGGTCAACTTCACAATTATATTTGTTTTTTTTTTCAATGAAAATGTCACCAAAATAAGGAAAAAAAGAAACTTGATTTTTATCTAAATGTCAAAAACACCTTTTTGTTATCTCAAGTCTCATGCTTTGACCTCAAGATAACATCACAGATAGAAGTTTTTTTCACATAGAATTGAAAACCGTCCGAGTTATAAATTTTGAATCATAATTTAATAAATTTTCAATACAAATTCTATAATTTGAGCCAAACAAACGCTACACATTAATTTGTTTGTAGGACCTGAAGGGCAACCCTGTACAATGGTTGTAAGGACTTTGCATTGGACAGTTCCACATTACTCTATTTGGGGTTTACCATTCTACTTGTTCTATTCAACTAGATCTTCTCAGTTTCTCCATGAAAGACCCAATCAAGGATTGTTTAGGACCCTTCTTTGCCACATGCTTTCTCCCATGGTGAGCTCCATTCTTTTTTTTCTTTTTCAATCTAGTGCATCATTTGGCGTAGGACTAACAAAAGCGCGCTTATACATATGGTGACAGAGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGGAATGGAAACTTCCACTAGAGAAGTATGGACTGAAACCAGAACACCCTTTTGAGGAAGATTATGCATCATGTCAGATGGCTATCTTGCCTGAGAATTTCTTCACTGAGGCGGATAAGGGAAAAATCATGTTCAAAAGAACATCCAAGTGGTGGTTCTGGGAAGGAGGCGTTGAATTC</genome_strand>
        <mrna_strand>CAATCTCAAACTCTACAG.................................................................................TGGTATGCATTTGATTTTGTGGTGATGTGCACTGGTAAATATGGAGATATCCCAAATATACCAAATTTTCCACCAAAAAAAGGGCCAAAAGAGTTTAATGGTCAAGTTCTTCATACCCTTGATTACTCTAAACTTGACCAAGAAGCATCTACTAAACTTATGAAAGGGAAGAAAGTTGTTGTTGTTGGCTATAAAAAATCAGCTATTGATCTTGCAGTGGAATGTGCTGAAGCTAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGAAGGGCAACCCTGTACAATGGTTGTAAGGACTTTGCATTGGACAGTTCCACATTACTCTATTTGGGGTTTACCATTCTACTTGTTCTATTCAACTAGATCTTCTCAGTTTCTCCATGAAAGACCCAATCAAGGATTGTTTAGGACCCTTCTTTGCCACATGCTTTCTCCCATG.......................................................................................AGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGGAATGGAAACTTCCACTAGAGAAGTATGGACTGAAACCAGAACACCCTTTTGAGGAAGATTATGCATCATGTCAGATGGCTATCTTGCCTGAGAATTTCTTCACTGAGGCGGATAAGGGAAAAATCATGTTCAAAAGAACATCCAAGTGGTGGTTCTGGGAAAGAGGCGTTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306506" ref_strand="+" ref_description="SGN-E306506 [cLEX-13-K12]">
      <seq>aatctcaaactctacagtggtatgcatttgattttgtggtgatgtgcactggtaaatatggagatatcccaaatataccaaattttccaccaaaaaaagggccaaaagagtttaatggtcaagttcttcatacccttgattactctaaacttgaccaagaagcatctactaaacttatgaaagggaagaaagttgttgttgttggctataaaaaatcagctattgatcttgcagtggaatgtgctgaagctaatcaaggacctgaagggcaaccctgtacaatggttgtaaggactttgcattggacagttccacattactctatttggggtttaccattctacttgttctattcaactagatcttctcagtttctccatgaaagacccaatcaaggattgtttaggacccttctttgccacatgctttctcccatgagaaaagcagcttctaagttaatcgagtcgtatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="118017" stop="119940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118228" g_stop="118244" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118245" i_stop="118325" i_length="81">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118326" g_stop="118566" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="258" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118567" i_stop="119337" i_length="771">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119338" g_stop="119516" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="437" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119517" i_stop="119603" i_length="87">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119604" g_stop="119640" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="474" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E306506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118228" e_stop="118244"/>
          <exon e_start="118326" e_stop="118566"/>
          <exon e_start="119338" e_stop="119516"/>
          <exon e_start="119604" e_stop="119640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCAAACTCTACAGGTTCTCTTTTTTTTCTCAATATAGTTTTATGTGAAACAATTCAAATTTCGATATTCTTAGGTTTTTTTTTTTTTTAATCAGTGGTATGCATTTGATTTTGTGGTGATGTGCACTGGTAAATATGGAGATATCCCAAATATACCAAATTTTCCACCAAAAAAAGGGCCAAAAGAGTTTAATGGTCAAGTTCTTCATACCCTTGATTACTCTAAACTTGACCAAGAAGCATCTACTAAACTTATGAAAGGGAAGAAAGTTGTTGTTGTTGGCTATAAAAAATCAGCTATTGATCTTGCAGTGGAATGTGCTGAAGCTAATCAAGGTAATTAATTAATTACTAGTAATTCCTTATAAGTCAAAGTATACGATCCTTCTTAATTAATTAATTAACCTAGTGTATTGAATTTTAAATATCTTAAAGTATACTATGTTATAACAATTTATGATAGTCTAAAATGGGATTGTCACACGTCAGGAAGGCAATTGGAATGTATTATCTTTAAAATAGACTTGGTAATTTATGTTTATTTATTTTTAACTAGTAGCGAATTCATCATAATAGACTATTTTTCAACTGTATATATTTAAGCCAATTTGGATACGAAGGGGCTTCCCATCTATTGATTGTTTGTTTGTTTGTGTGGTTCCTAATAATAATTGTTACAACAAAAAATAAATTTCCAAAAACAGGCAGAAGTTGATTTGTCTAAATCCATAAAAGGAAAATAAATTGTGATTGTTCACATCAGTAGTACTATTCTTTTAGAAAATTGAAAGTGCATATATTGATTTACCAAACTACAAACATACATCATGATGGTCAACTTCACAATTATATTTGTTTTTTTTTTCAATGAAAATGTCACCAAAATAAGGAAAAAAAGAAACTTGATTTTTATCTAAATGTCAAAAACACCTTTTTGTTATCTCAAGTCTCATGCTTTGACCTCAAGATAACATCACAGATAGAAGTTTTTTTCACATAGAATTGAAAACCGTCCGAGTTATAAATTTTGAATCATAATTTAATAAATTTTCAATACAAATTCTATAATTTGAGCCAAACAAACGCTACACATTAATTTGTTTGTAGGACCTGAAGGGCAACCCTGTACAATGGTTGTAAGGACTTTGCATTGGACAGTTCCACATTACTCTATTTGGGGTTTACCATTCTACTTGTTCTATTCAACTAGATCTTCTCAGTTTCTCCATGAAAGACCCAATCAAGGATTGTTTAGGACCCTTCTTTGCCACATGCTTTCTCCCATGGTGAGCTCCATTCTTTTTTTTCTTTTTCAATCTAGTGCATCATTTGGCGTAGGACTAACAAAAGCGCGCTTATACATATGGTGACAGAGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGG</genome_strand>
        <mrna_strand>AATCTCAAACTCTACAG.................................................................................TGGTATGCATTTGATTTTGTGGTGATGTGCACTGGTAAATATGGAGATATCCCAAATATACCAAATTTTCCACCAAAAAAAGGGCCAAAAGAGTTTAATGGTCAAGTTCTTCATACCCTTGATTACTCTAAACTTGACCAAGAAGCATCTACTAAACTTATGAAAGGGAAGAAAGTTGTTGTTGTTGGCTATAAAAAATCAGCTATTGATCTTGCAGTGGAATGTGCTGAAGCTAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGAAGGGCAACCCTGTACAATGGTTGTAAGGACTTTGCATTGGACAGTTCCACATTACTCTATTTGGGGTTTACCATTCTACTTGTTCTATTCAACTAGATCTTCTCAGTTTCTCCATGAAAGACCCAATCAAGGATTGTTTAGGACCCTTCTTTGCCACATGCTTTCTCCCATG.......................................................................................AGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222021" ref_strand="+" ref_description="SGN-E222021 [cLEL-10-H17](-)">
      <seq>atcagttccaacctgaaaagcatattgatgagacattgaagttgcttcaaagtctttaaacgtcaaggtttccccttatacattcttttcctgcctctagccaataaagttcttggactttttctgccactaatgtgtgccaattgtatgttatctgataggctgtacaacgacctatatttcatagatgccaaaggagctgttagtttaaagtcattctacaatttatgttgtagaatgttgaactcggtctcccgcgagagataaatttgtatatgggcctttggtatggttgtagtaactgcataatggagaattttcttcaaaaaaaaaaaaaaaatggattctctcgtgatagtcgaaacctttttattatctactcactcaaatgacatcacaattttaactgttactgtttgatcttctgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="121224" stop="13949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120924" g_stop="120600" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120599" i_stop="119548" i_length="1052">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.022" a_score="0.59"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119547" g_stop="119499" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="371" r_length="46" r_score="0.592"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119498" i_stop="119286" i_length="213">
            <donor d_prob="0.964" d_score="0.59"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119285" g_stop="119229" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="426" r_length="55" r_score="0.596"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119228" i_stop="118892" i_length="337">
            <donor d_prob="0.000" d_score="0.62"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118891" g_stop="118873" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="445" r_length="19" r_score="0.632"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E222021" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120924" e_stop="120600"/>
          <exon e_start="119547" e_stop="119499"/>
          <exon e_start="119285" e_stop="119229"/>
          <exon e_start="118891" e_stop="118873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTGTAAATGAGAATGGAGTCACTTGTGATGATCTTGAAATATTAATCTTTATTCATTACTTTTACTGATAAAAATAGAAGTTCTAAGTCATAAGCTGAGGTATTTAACATTTGTGGATACCTTGCTTGACCTTTCATACATGTATGTTTATTCCTTAAAATGAGTAGATAAATATACTGTATAAGCACTAGGTATAGAAGAAATAATAAGTTAATTAAGTAGGAAAGTTTCAAATGTTATTGAGTGAAGCTACTTCTCCTCTGCATAATCTTGGCTGTTGTAGGGGCTAAAGGCTTCAGCCAACCAGTTCGTCTTCCTCCAAACTTGCCATCCCATCTCTTGGCAGATTTCATCGCTATGGTTAATACTGAAAGTGGAAATGCAATTTCTCTTGTAGAATCTTGTCGTCCTCTTCATAATCTCCATCTCTTGTGTTATCTGTTCAAGCATTTTCTCAACAGATGGAAGCTTAAACAGATCATCAACAAGTCGTGATAGCCATATGCAACGTATCTCAGCTGAATGCAGGTTTGAAACACTTTCAAGGTAACCCACGAAAGCCATATTTGGTATCAACGGGTGGATTGTACCCCTGTACAAGGGTATCATGCCTGAGGGGAACTCTACCAGACTGCGAAAGGGATCAGGTAATATAGCTTTAATCTTTTTCTTCCCATCAAAACCAGTTGCAAGTATGACAACATCAGCTTCCAACTTGGTGTTGTCCTCGAATTCAACGCCTCCTTCCCAGAACCACCACTTGGATGTTCTTTTGAACATGATTTTTCCCTTATCCGCCTCAGTGAAGAAATTCTCAGGCAAGATAGCCATCTGACATGATGCATAATCTTCCTCAAAAGGGTGTTCTGGTTTCAGTCCATACTTCTCTAGTGGAAGTTTCCATTCCAAATACGACTCGATTAACTTAGAAGCTGCTTTTCTCTGTCACCATATGTATAAGCGCGCTTTTGTTAGTCCTACGCCAAATGATGCACTAGATTGAAAAAGAAAAAAAAGAATGGAGCTCACCATGGGAGAAAGCATGTGGCAAAGAAGGGTCCTAAACAATCCTTGATTGGGTCTTTCATGGAGAAACTGAGAAGATCTAGTTGAATAGAACAAGTAGAATGGTAAACCCCAAATAGAGTAATGTGGAACTGTCCAATGCAAAGTCCTTACAACCATTGTACAGGGTTGCCCTTCAGGTCCTACAAACAAATTAATGTGTAGCGTTTGTTTGGCTCAAATTATAGAATTTGTATTGAAAATTTATTAAATTATGATTCAAAATTTATAACTCGGACGGTTTTCAATTCTATGTGAAAAAAACTTCTATCTGTGATGTTATCTTGAGGTCAAAGCATGAGACTTGAGATAACAAAAAGGTGTTTTTGACATTTAGATAAAAATCAAGTTTCTTTTTTTCCTTATTTTGGTGACATTTTCATTGAAAAAAAAAACAAATATAATTGTGAAGTTGACCATCATGATGTATGTTTGTAGTTTGGTAAATCAATATATGCACTTTCAATTTTCTAAAAGAATAGTACTACTGATGTGAACAATCACAATTTATTTTCCTTTTATGGATTTAGACAAATCAACTTCTGCCTGTTTTTGGAAATTTATTTTTTGTTGTAACAATTATTATTAGGAACCACACAAACAAACAA</genome_strand>
        <mrna_strand>ATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTGCTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTATACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGGACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACCTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGGTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AAAAAAAAAAAAAATGGAT-TCTCTCGTGATAGTCGAAACCTTTTT.....................................................................................................................................................................................................................ATTATCTACTCACTCAAATGACA-TCACAATTT-TAACTGTTACTGTTTGATCTTCT.................................................................................................................................................................................................................................................................................................................................................GCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250010" ref_strand="+" ref_description="SGN-E250010 [cLEG-4-L3]">
      <seq>gacccttctttgccacatgctttctcccatggtgagctccattcttttttttctttttcaatctagtgcatcatttggcgtaggactaacaaaagcgcgcttatacatatggtgacagagaaaagcagcttctaagttaatcgagtcgtatttggaatggaaacttccactagagaagtatggactgaaaccagaacacccttttgaggaagattatgcatcatgtcagatggctatcttgcctgagaatttcttcactgaggcggataaaggaaaaatcatgttcaaaagaacatccaagtggtggttctgggaaggaggcgttgaattcgaggacaacaccaagttggaagctgatgttgtcatacttgcaactggttttgatgggaagaaaaagattaaagctatattacctgatccctttcgcagtctggtagagttcccctcaagcatgatacccttgtacaggggtacaatccacccgttgataccaaatatggctttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="119186" stop="120292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119486" g_stop="119992" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E250010" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119486" e_stop="119992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCTTCTTTGCCACATGCTTTCTCCCATGGTGAGCTCCATTCTTTTTTTTCTTTTTCAATCTAGTGCATCATTTGGCGTAGGACTAACAAAAGCGCGCTTATACATATGGTGACAGAGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGGAATGGAAACTTCCACTAGAGAAGTATGGACTGAAACCAGAACACCCTTTTGAGGAAGATTATGCATCATGTCAGATGGCTATCTTGCCTGAGAATTTCTTCACTGAGGCGGATAAGGGAAAAATCATGTTCAAAAGAACATCCAAGTGGTGGTTCTGGGAAGGAGGCGTTGAATTCGAGGACAACACCAAGTTGGAAGCTGATGTTGTCATACTTGCAACTGGTTTTGATGGGAAGAAAAAGATTAAAGCTATATTACCTGATCCCTTTCGCAGTCTGGTAGAGTTCCCCTCAGGCATGATACCCTTGTACAGGGGTACAATCCACCCGTTGATACCAAATATGGCTTTCGT</genome_strand>
        <mrna_strand>GACCCTTCTTTGCCACATGCTTTCTCCCATGGTGAGCTCCATTCTTTTTTTTCTTTTTCAATCTAGTGCATCATTTGGCGTAGGACTAACAAAAGCGCGCTTATACATATGGTGACAGAGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGGAATGGAAACTTCCACTAGAGAAGTATGGACTGAAACCAGAACACCCTTTTGAGGAAGATTATGCATCATGTCAGATGGCTATCTTGCCTGAGAATTTCTTCACTGAGGCGGATAAAGGAAAAATCATGTTCAAAAGAACATCCAAGTGGTGGTTCTGGGAAGGAGGCGTTGAATTCGAGGACAACACCAAGTTGGAAGCTGATGTTGTCATACTTGCAACTGGTTTTGATGGGAAGAAAAAGATTAAAGCTATATTACCTGATCCCTTTCGCAGTCTGGTAGAGTTCCCCTCAAGCATGATACCCTTGTACAGGGGTACAATCCACCCGTTGATACCAAATATGGCTTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543820" ref_strand="+" ref_description="SGN-E543820 [TUS-65-N9](-)">
      <seq>atatggctatcacgacttgttgatgatctgtttaagcttccatctgttgagaaaatgcttgaacagataacacaagagatggagattatgaagaggacgacaagattctacaagagaaattgcatttccactttcagtattaaccatagcgatgaaatctgccaagagatgggatggcaagtttggaggaagacgaactggttggctgaagcctttagcccctacaacagccaagattatgcagaggagaagtagcttcactcaataacatttgaaactttcctacttaattaacttattatttcttctatacctagtgcttatacagtatatttatctactcattttaaggaataaacatacatgtatgaaaggtcaagcaaggtatccacaaatgttaaatacctcagcttatgacttagaacttctatttttatcagtaaaagtaatgaataaagattaatatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="119742" stop="120811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120042" g_stop="120511" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E543820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120042" e_stop="120511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGCTATCACGACTTGTTGATGATCTGTTTAAGCTTCCATCTGTTGAGAAAATGCTTGAACAGATAACACAAGAGATGGAGATTATGAAGAGGACGACAAGATTCTACAAGAGAAATTGCATTTCCACTTTCAGTATTAACCATAGCGATGAAATCTGCCAAGAGATGGGATGGCAAGTTTGGAGGAAGACGAACTGGTTGGCTGAAGCCTTTAGCCCCTACAACAGCCAAGATTATGCAGAGGAGAAGTAGCTTCACTCAATAACATTTGAAACTTTCCTACTTAATTAACTTATTATTTCTTCTATACCTAGTGCTTATACAGTATATTTATCTACTCATTTTAAGGAATAAACATACATGTATGAAAGGTCAAGCAAGGTATCCACAAATGTTAAATACCTCAGCTTATGACTTAGAACTTCTATTTTTATCAGTAAAAGTAATGAATAAAGATTAATATTTCA</genome_strand>
        <mrna_strand>ATATGGCTATCACGACTTGTTGATGATCTGTTTAAGCTTCCATCTGTTGAGAAAATGCTTGAACAGATAACACAAGAGATGGAGATTATGAAGAGGACGACAAGATTCTACAAGAGAAATTGCATTTCCACTTTCAGTATTAACCATAGCGATGAAATCTGCCAAGAGATGGGATGGCAAGTTTGGAGGAAGACGAACTGGTTGGCTGAAGCCTTTAGCCCCTACAACAGCCAAGATTATGCAGAGGAGAAGTAGCTTCACTCAATAACATTTGAAACTTTCCTACTTAATTAACTTATTATTTCTTCTATACCTAGTGCTTATACAGTATATTTATCTACTCATTTTAAGGAATAAACATACATGTATGAAAGGTCAAGCAAGGTATCCACAAATGTTAAATACCTCAGCTTATGACTTAGAACTTCTATTTTTATCAGTAAAAGTAATGAATAAAGATTAATATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543813" ref_strand="+" ref_description="SGN-E543813 [TUS-65-N5](-)">
      <seq>agaaaatgcttgaccagataacacaagagatggagattatgaagagggacggacaagattttctaccaagagaaattngcatttccactttcagtattaaccatagcgatgaaatctgccaagagatgggatggcaagtttggaggaagacgaactggttggctgaagcctttagcccctacaacagccaagattatgnccagagggagagaagtagcttcactcaataacatttgaaactttcctacttaattaacttattatttcttctatacctagtgcttatacagtatatttatctactcattttaaggaataaacatacatgtatgaaaggtcaagcaaggtatccacaaatgttaaatacctcagcttatgacttagaacttctatttttatcagtaaaagtaatgaataaagattaatatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="+" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="119791" stop="120823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120091" g_stop="120527" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="+" ref_id="SGN-E543813" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120091" e_stop="120527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGCTTGAACAGATAACACAAGAGATGGAGATTATGAAGA-GGAC-GACAAGA--TTCTA-CAAGAGAAATT-GCATTTCCACTTTCAGTATTAACCATAGCGATGAAATCTGCCAAGAGATGGGATGGCAAGTTTGGAGGAAGACGAACTGGTTGGCTGAAGCCTTTAGCCCCTACAACAGCCAAGATTATG--CAGA--G-GAGAAGTAGCTTCACTCAATAACATTTGAAACTTTCCTACTTAATTAACTTATTATTTCTTCTATACCTAGTGCTTATACAGTATATTTATCTACTCATTTTAAGGAATAAACATACATGTATGAAAGGTCAAGCAAGGTATCCACAAATGTTAAATACCTCAGCTTATGACTTAGAACTTCTATTTTTATCAGTAAAAGTAATGAATAAAGATTAATATTTCAAGATCATCACAAGTGA</genome_strand>
        <mrna_strand>AGAAAATGCTTGACCAGATAACACAAGAGATGGAGATTATGAAGAGGGACGGACAAGATTTTCTACCAAGAGAAATTNGCATTTCCACTTTCAGTATTAACCATAGCGATGAAATCTGCCAAGAGATGGGATGGCAAGTTTGGAGGAAGACGAACTGGTTGGCTGAAGCCTTTAGCCCCTACAACAGCCAAGATTATGNCCAGAGGGAGAGAAGTAGCTTCACTCAATAACATTTGAAACTTTCCTACTTAATTAACTTATTATTTCTTCTATACCTAGTGCTTATACAGTATATTTATCTACTCATTTTAAGGAATAAACATACATGTATGAAAGGTCAAGCAAGGTATCCACAAATGTTAAATACCTCAGCTTATGACTTAGAACTTCTATTTTTATCAGTAAAAGTAATGAATAAAGATTAATATTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346148" ref_strand="+" ref_description="SGN-E346148 [cTOF-34-C13]">
      <seq>ggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttccccttctacattcttttcctgcctctagccaataaagttcttgtactttttctgccactaatgtgtgccaattgtatgttatctgataggctgtacaacgacttatatttcatagatgccaaaggagctgttagtttaaagtcattctacaatttatgttgtagaatgttgaactcggtctcccgcgagagataaatttgtatatgggcctttgctatggttgtagtaactgcataatggagaattttcttcaattggcacttcttacagttgttgaaaccccaacagtggtggatcatatagtaaattgtaaatgagaatggagtcacttgtgatgatcttgaaatattaatctttattcattacttttactgataaaaatagaagttctaagtcataagctgaggtatttaacatttgtggataccttgcttgacctttatacatgtatgtttattccttaaaatgagtagataaatatactgtataagcactangtatagaagaaataataagttaattaagtaggaaagtttcaaatgttattgagtgaagctacttctcctctgcataatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="121279" stop="119973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120979" g_stop="120273" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E346148" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120979" e_stop="120273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTGTAAATGAGAATGGAGTCACTTGTGATGATCTTGAAATATTAATCTTTATTCATTACTTTTACTGATAAAAATAGAAGTTCTAAGTCATAAGCTGAGGTATTTAACATTTGTGGATACCTTGCTTGACCTTTCATACATGTATGTTTATTCCTTAAAATGAGTAGATAAATATACTGTATAAGCACTAGGTATAGAAGAAATAATAAGTTAATTAAGTAGGAAAGTTTCAAATGTTATTGAGTGAAGCTACTTCTCCTCTGCATAATCTTG</genome_strand>
        <mrna_strand>GGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTGTAAATGAGAATGGAGTCACTTGTGATGATCTTGAAATATTAATCTTTATTCATTACTTTTACTGATAAAAATAGAAGTTCTAAGTCATAAGCTGAGGTATTTAACATTTGTGGATACCTTGCTTGACCTTT-ATACATGTATGTTTATTCCTTAAAATGAGTAGATAAATATACTGTATAAGCACTANGTATAGAAGAAATAATAAGTTAATTAAGTAGGAAAGTTTCAAATGTTATTGAGTGAAGCTACTTCTCCTCTGCATAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284262" ref_strand="+" ref_description="SGN-E284262 [cLER-16-F21]">
      <seq>tagtggtgatcatattgaatcccataaggccactgcaaagaaggacaggtcttaccatggcctttgttgtgtcattaaggcaacaaagataggaaagagtggggaatcccgggagacctttttgacacattgcctggtgaacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttccccttctacattcttttactgcctctagccaataaagttcttgtactttttctgccactaatgtgtgccaattgtatgttatctgataggctgtacaacgacttatatttcatagatgccaaaggagctgttagtttaaagtcattctacaatttatgttgtagaatgttgaactcggtctcccgcgagagataaatttgtatatgggcctttgctatggttgtagtaactgcataatggagaattttcttcaattggcacttcttacagttgttgaaaccccaacagtggtggatcatatagtaaatttgtaatgagaatggagtcacttgtgatgatcttgaaatattaatctttattcattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="121386" stop="118006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121084" g_stop="120475" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="640" r_length="612" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E284262" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121084" e_stop="120475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTGCAAAGAAGTACAGG-CTC-CCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTGTAAATGAGAATGGAGTCACTTGTGATGATCTTGAAATATTAATCTTTATTCATTACTTTTACTGATAA</genome_strand>
        <mrna_strand>GCCACTGCAAAGAAGGACAGGTCTTACCATGGCCTTTGTTGTGTCATTAAGGCAACAAAGATAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGACACATTGCCTGGTGAACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTACTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTTGTAATGAGAATGGAGTCACTTGTGATGATCTTGAAATATTAATCTTTATTCATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746943" ref_strand="+" ref_description="SGN-E746943 [GI|47104339]">
      <seq>aaaatggcttctctatcggtctctgtaaaacacactcttccttctctgctccaatatgctcaaaccccaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttccccttctacattcttttcctgcctctagccaataaagttcttgtactttttctgccactaatgtgtgccaattgtatgttatctgataggctgtacaacgacttatatttcatagatgccaaaggagctgttagtttaaagtcattctacaatttatgttgtagaatgttgaactcggtctcccgcgagagataaatttgtatatgggcctttgctatggttgtagtaactgcataatggagaattttcttcaattggcacttcttacagttgttgaaaccccaacagtggtggatcatatagtaaattgtaaatgagaatggagtcacttgtgatgatcttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123349" stop="120201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123049" g_stop="122852" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="336" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="426" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="120495" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="1016" r_length="590" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E746943" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1016</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123049" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTGTAAATGAGAATGGAGTCACTTGTGATGATCTTGAAATATTAATCTTTA</genome_strand>
        <mrna_strand>AAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTGTAAATGAGAATGGAGTCACTTGTGATGATCTTGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266939" ref_strand="+" ref_description="SGN-E266939 [cLEI-7-M14]">
      <seq>tttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacattgaagttacttcaaagtctttaaacgtcaaggctgtacaacgacttatatttcatagatgccaaaggagctgttagtttaaagtcattctacaatttatgttgtagaatgttgaactcggtctcccgcgagagataaatttgtatatgggcctttgctatggttgtagtaactgcataatggagaattttcttcaattggcacttcttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="122986" stop="120284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122686" g_stop="122643" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="134" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121084" g_stop="120858" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="361" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120857" i_stop="120764" i_length="94">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120763" g_stop="120584" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="541" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E266939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122686" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120858"/>
          <exon e_start="120763" e_stop="120584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACA</genome_strand>
        <mrna_strand>TTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAG..............................................................................................GCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735110" ref_strand="+" ref_description="SGN-E735110 [LB14BH05]">
      <seq>catctcatagtagaaagagagaaaaaaatggcttctctatcggtctctgtaaaacacactcttccttctctgctccaatatgctcaaaccccaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttccccttctacattcttttcctgcctctagccaataaagttcttgtactttttctgccactaatgtgtgccaattgtatgttatctgataggctgtacaacgacttatatttcatagatgccaaaggagctgttagtttaaagtcattctacaatttatgttgtagaatgttgaactcggtctcccgcgagagataaatttgtatatgggcctttgctatggttgtagtaactgcataatggagaattttcttcaatgggcactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123373" stop="120291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123073" g_stop="122852" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="360" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="450" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="120591" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="944" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="945" polyA_stop="957"/>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E735110" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>944</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123073" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACT</genome_strand>
        <mrna_strand>CATCTCATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATGGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366942" ref_strand="+" ref_description="SGN-E366942 [cLPT-6-A20]">
      <seq>ctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatatcgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttccccttctacattcttttcctgcctctagccaataaagttcttctactttttctgccactaatgtgtgccaattgtatgttatctgataggctgtacaacgacttatatttaatagatgtcaaaggagctgttagtttaaagtcatgctacaatttatgttgtagaatgttgaactcggtctcccgcgagagataaatttgtatatggtcctttgctatggttgtagtaactgcataatggagaattttcttcaattgccttttggaacaaagatatggntgaagtaactgcataatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="121382" stop="120287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121082" g_stop="120596" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E366942" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121082" e_stop="120596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTG</genome_strand>
        <mrna_strand>CTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATCGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTCTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTAATAGATGTCAAAGGAGCTGTTAGTTTAAAGTCATGCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGTCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409016" ref_strand="+" ref_description="SGN-E409016 [PPI-12-J22]">
      <seq>ggggaatcccgggagacctatttggtacattgccaggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatatcgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttccccttctacattcttttcctgcctctagccaataaacttcttgtactttttctgccactaatgtgtgccaattgtatgttatatgataggctgtacaaccacttatatttaatagatgtcaaaggagctgttagtttaaagtcatgctacaatttatgctgtagaatgttgaactcgggtctcccgtgagagataagtttgtatatgagcctttgctctggttgtagtaactgcataatggagaattttctataattgcctgaacttggcacttcttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="121314" stop="120291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121014" g_stop="120596" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="451"/>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E409016" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121014" e_stop="120596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTC-GGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTG</genome_strand>
        <mrna_strand>GGGGAATCCCGGGAGACCTATTTGGTACATTGCCAGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATCGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAACTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATATGATAGGCTGTACAACCACTTATATTTAATAGATGTCAAAGGAGCTGTTAGTTTAAAGTCATGCTACAATTTATGCTGTAGAATGTTGAACTCGGGTCTCCCGTGAGAGATAAGTTTGTATATGAGCCTTTGCTCTGGTTGTAGTAACTGCATAATGGAGAATTTTCTATAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704026" ref_strand="+" ref_description="SGN-E704026 [FA23AF05]">
      <seq>gaaagagagaaaaaaatggcttctctatcggtctctgtaaaacacactcttccttctctgctccaatatgctcaaaccccaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttccccttctacattcttttcctgcctctagccaataaagttcttgtactttttctgccactaatgtgtgccaattgtatgttatctgataggctgtacaacgacttatatttcatagatgccaaaggagctgttagtttaaagtcattctacaatttatgttgtagaatgttgaactcggtctcccgcgagagataaatttgtatatgggcctttgctatggttgtagtaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123361" stop="120320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123061" g_stop="122852" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="348" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="438" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="120620" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="903" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E704026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123061" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGC</genome_strand>
        <mrna_strand>GAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617279" ref_strand="+" ref_description="SGN-E617279 [90755]">
      <seq>tgacgaaggcaacaaagttaggaaagagtggggaatcccgggagactatttggtacattgcaggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatatcgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttccccttctacattcttttcctgcctctagccaataaacttcttgtactttttctgccactaatgtgtgccaattgtatgttatatgataggctgtacaaccacttatatatttaataggctgtcaaaggagctgttagtttaaagtcatgctacaatttatgctgtagaatgttgaactcgggtctcccgtgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="121343" stop="120362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121043" g_stop="120662" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E617279" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121043" e_stop="120662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGAC-T-TATATTTCATA-GATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTC-GGTCTCCCGCGAGAG</genome_strand>
        <mrna_strand>TGACGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGA-CTATTTGGTACATTG-CAGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATCGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAACTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATATGATAGGCTGTACAACCACTTATATATTTAATAGGCTGTCAAAGGAGCTGTTAGTTTAAAGTCATGCTACAATTTATGCTGTAGAATGTTGAACTCGGGTCTCCCGTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283426" ref_strand="+" ref_description="SGN-E283426 [cLER-12-F1]">
      <seq>gaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagaccttttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacattgaagttacttcaaagtctttaaacgtcaaggctgtacaacgacttatatttcatagatgccaaaggagctgttagtttaaagtcattctacaatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123001" stop="120395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122701" g_stop="122643" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="149" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121084" g_stop="120858" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="377" r_length="228" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120857" i_stop="120764" i_length="94">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120763" g_stop="120695" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="446" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E283426" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122701" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120858"/>
          <exon e_start="120763" e_stop="120695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACC-TTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATG</genome_strand>
        <mrna_strand>GAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAG..............................................................................................GCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345723" ref_strand="+" ref_description="SGN-E345723 [cTOF-18-D16]">
      <seq>catctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttccccttctacattcttttcctgcctctagccaataaagttcttgtactttttctgccactaatgtgtgccaattgtatgntatctgataggctgtacacgacttatatttcatagatgccaaggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123272" stop="120424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122972" g_stop="122852" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="259" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="349" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="120724" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="708" r_length="359" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E345723" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122972" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCT</genome_strand>
        <mrna_strand>CATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGNTATCTGATAGGCTGTAC-ACGACTTATATTTCATAGATGCC-AAGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319052" ref_strand="+" ref_description="SGN-E319052 [cTOB-14-J7]">
      <seq>catctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttccccttctacattcttttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123272" stop="120532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122972" g_stop="122852" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="259" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="349" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="120832" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="602" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E319052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122972" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTG</genome_strand>
        <mrna_strand>CATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712996" ref_strand="+" ref_description="SGN-E712996 [FB06BG02]">
      <seq>gtataaagagagaaaaaaatggcttctctatcggtctctgtaaaacacactcttccttctctgctccaatatgctcaaaccccaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacaattgcctggtacacagacttatgtgcttgacaacaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacattgaagttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123364" stop="120580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123064" g_stop="122852" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="351" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="441" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="120880" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="647" r_length="206" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E712996" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123064" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTAC-ATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTAC</genome_strand>
        <mrna_strand>GTATAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACAATTGCCTGGTACACAGACTTATGTGCTTGACAACAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282462" ref_strand="+" ref_description="SGN-E282462 [cLER-18-K13]">
      <seq>ttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123086" stop="120588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122859" g_stop="122852" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="146" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="236" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="120888" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="433" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E282462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122859" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATT</genome_strand>
        <mrna_strand>TTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271948" ref_strand="+" ref_description="SGN-E271948 [cLEM-8-M15]">
      <seq>gaaagagagaaaaaaatggcttctgtatcggtctctgtaaaacacactcttccttctctgctccaatatgctcaaaccccaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123361" stop="120590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123061" g_stop="122852" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="348" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="438" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="120890" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="633" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E271948" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123061" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACA</genome_strand>
        <mrna_strand>GAAAGAGAGAAAAAAATGGCTTCTGTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475147" ref_strand="+" ref_description="SGN-E475147 [cSTB-39-K8]">
      <seq>gtaaaacacactcttccttctctgctccagtatgctcaaaccccaaaaaaaccccatctcccaaaacctcaccattgtctccagatcatcacaatcccagttttatggccttaaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgcgaaggtgaataaaggttcggcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggcaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttgggattagtggtgatgatattgaatctcacaaggcctttgcaaagaagtacagactcccatttaccttgttgtgtgacgaaggcaacaaagttaggaaagagtggggaatcccgggagacctatttggtacattgccaggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatatcgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123325" stop="120593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123025" g_stop="122852" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="313" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="403" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="120893" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="595" r_length="192" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E475147" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123025" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAA-CCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAG</genome_strand>
        <mrna_strand>GTAAAACACACTCTTCCTTCTCTGCTCCAGTATGCTCAAACCCCAAAAAAACCCCATCTCCCAAAACCTCACCATTGTCTCCAGATCATCACAATCCCAGTTTTATGGCCTTAAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCGAAG.......................................................................GTGAATAAAGGTTCGGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGCAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGGATTAGTGGTGATGATATTGAATCTCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGACTCCCATTTACCTTGTTGTGTGACGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTATTTGGTACATTGCCAGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATCGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278050" ref_strand="+" ref_description="SGN-E278050 [cLER-4-G3]">
      <seq>aaaatggcttgtctatcggactctgtaaaacacactcttgcttctctgctccaatatgctcaaaccccaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123349" stop="120621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123049" g_stop="122852" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="336" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="426" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="120921" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="590" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E278050" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123049" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCA</genome_strand>
        <mrna_strand>AAAATGGCTTGTCTATCGGACTCTGTAAAACACACTCTTGCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299202" ref_strand="+" ref_description="SGN-E299202 [cLET-43-A23]">
      <seq>aaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgctggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123277" stop="120622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122977" g_stop="122852" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="264" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="354" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="120922" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="517" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E299202" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122977" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="120922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATC</genome_strand>
        <mrna_strand>AAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGCTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281790" ref_strand="+" ref_description="SGN-E281790 [cLER-14-J13]">
      <seq>aaaaaaatggcttctctatcggtctctgtaaaacacactcttccttctctgctccaatatgctcaaaccccaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123352" stop="120711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123052" g_stop="122852" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="339" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="429" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="121011" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="503" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E281790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123052" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="121011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGG</genome_strand>
        <mrna_strand>AAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370751" ref_strand="+" ref_description="SGN-E370751 [TUS-28-P8]">
      <seq>gaaagagagaaaaaaatggcttctctatcggtctctgtaaaacacactcttccttctctgctccaatatgctcaaaccccaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggtcctttcaaagaagtacaggctcccattttaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123361" stop="120749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123061" g_stop="122852" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="348" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="438" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="121049" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="475" r_length="37" r_score="0.861"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E370751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123061" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="121049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCA-TTTACCTTG</genome_strand>
        <mrna_strand>GAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTTCAAAGAAGTACAGGCTCCCATTTTACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314047" ref_strand="+" ref_description="SGN-E314047 [cTOA-19-I15]">
      <seq>caagaccaacaatctgctaataatacaaatttcactatcatcatcacatagtagaaagagagaaaaaaatggcttctctatcggtctctgtaaaacacactcttccttctctgctccaatatgctcaaaccccaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123414" stop="120750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123114" g_stop="122852" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="401" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="491" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="121050" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="526" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E314047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123114" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="121050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGACCAACAATCTGCTAATAATACAAATTTCACTATCATCATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTT</genome_strand>
        <mrna_strand>CAAGACCAACAATCTGCTAATAATACAAATTTCACTATCATCATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285839" ref_strand="+" ref_description="SGN-E285839 [cLES-5-D4]">
      <seq>tcactatcatcatcacatagtagaaagagagaaaaaaatggcttctctatcggtctctgtaaaacacactcttccttctctgctccaatatgctcaaaccccaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123383" stop="120750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123083" g_stop="122852" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122643" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="370" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121942" g_stop="121853" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="460" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121084" g_stop="121050" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="495" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E285839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123083" e_stop="122852"/>
          <exon e_start="122780" e_stop="122643"/>
          <exon e_start="121942" e_stop="121853"/>
          <exon e_start="121084" e_stop="121050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTATCATCATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTT</genome_strand>
        <mrna_strand>TCACTATCATCATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295989" ref_strand="+" ref_description="SGN-E295989 [cLET-27-E8]">
      <seq>aaaatggcttctctatcggtctctgtaaaacacactcttccttctctgctccaatatgctcaaaccccaaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123349" stop="122417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123049" g_stop="122852" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122780" g_stop="122717" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="263" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E295989" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123049" e_stop="122852"/>
          <exon e_start="122780" e_stop="122717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAA-ACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTC</genome_strand>
        <mrna_strand>AAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291422" ref_strand="+" ref_description="SGN-E291422 [cLET-2-P24]">
      <seq>aaatggcttctctatcgggctctgtaaaacacactcttccttctctgctccaatatgctcaaaccccaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-6zSWJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K09.2" temp_strand="-" temp_description="C07HBa0025K09.2  AC212608.2 htgs_phase:2 submitted_to_sgn_as:gi|239582800|gb|AC212608.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="123348" stop="122561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123048" g_stop="122861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.2" gen_strand="-" ref_id="SGN-E291422" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123048" e_stop="122861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATT</genome_strand>
        <mrna_strand>AAATGGCTTCTCTATCGGGCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>91</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="98" PGL_stop="1249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98" e_stop="1249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="98" e_stop="1249" e_length="1152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98" stop="735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138" stop="765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138" stop="713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="188" stop="740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="353" stop="1116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="380" stop="950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="684" stop="1082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="870" stop="1249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTACTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCACAGACATAGGTTTGTTCTATTCCAATGAATCCAAATCAGAACTAATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTTCATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGTAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCATTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATATAAGATTGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGTTTTTAAT</gDNA_template>
            <first_frame> R  F  V  P  A  F  S  L  N  G  W  G  L  N  L  *  *  *  L  C  M  L  M  I  *  T  S  L  E  L  V  K  S  F  *  K  L  L  S  V  *  K  E  N  L  K  *  K  I  S  G  R  Q  N  F  V  L  V  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  L  L  T  S  I  Q  I  H  F  D  L  K  R  M  M  K  S  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  V  Y  W  Q  D  S  V  T  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  I  F  E  G  P  Q  T  *  V  C  S  I  P  M  N  P  N  Q  N  *  L  V  T  Q  M  Q  G  I  Y  Q  I  R  I  K  L  D  H  K  Q  A  I  C  F  H  V  E  T  R  Q  Y  L  G  D  Q  *  S  K  H  W  *  P  L  L  Q  I  M  *  K  *  *  P  S  M  K  Q  V  E  S  A  S  G  *  D  Q  *  P  I  I  F  R  K  C  V  V  F  L  *  K  R  I  Y  Q  P  Q  C  T  K  I  M  L  H  V  *  L  N  *  K  E  D  T  S  K  E  T  G  Q  S  I  S  H  Q  S  S  F  S  R  M  I  F  N  K  M  V  R  *  K  F  N  K  F  V  Q  V  I  I  L  L  I  Y  S  L  R  H  C  Q  H  Q  H  L  R  S  *  D  I  R  L  N  A  P  S  P  R  Y  Q  V  K  F  S  S  G  G  A  K  Y  A  L  Y  S  F  P  *  L  W  F  C  P  K  L  G  F  P  G  K  V  F  N </first_frame>
            <second_frame>  D  L  S  L  H  F  H  *  T  V  G  V  *  I  C  N  N  S  C  V  C  *  *  F  E  H  H  W  N  S  *  R  A  F  R  S  C  *  V  S  E  K  R  I  *  N  E  R  S  R  E  D  K  I  L  S  W  S  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  S  I  E  Y  S  N  G  G  K  I  S  *  H  Q  Y  R  S  I  S  T  S  R  E  *  *  R  A  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  G  K  I  Q  L  L  P  N  K  K  T  L  E  W  C  *  T  H  T  S  I  S  S  R  D  H  R  H  R  F  V  L  F  Q  *  I  Q  I  R  T  N  W  L  R  R  C  R  V  F  I  R  S  A  *  S  S  I  T  N  R  L  F  V  F  M  W  R  H  G  N  I  L  A  I  N  E  A  N  I  G  S  H  F  F  K  S  C  R  N  N  S  H  P  *  S  K  S  R  V  R  L  V  E  I  N  D  P  S  Y  S  E  N  V  W  F  F  F  E  K  E  Y  T  N  H  N  V  R  R  *  C  C  M  Y  S  S  I  E  R  R  I  H  Q  R  R  P  D  K  A  Y  L  T  K  V  L  F  H  A  *  S  S  T  K  W  *  D  R  S  S  T  N  S  F  K  *  *  S  C  *  F  I  H  *  G  I  A  N  I  N  I  *  E  V  E  I  *  D  *  M  R  R  L  R  D  I  K  *  S  F  H  Q  G  E  R  N  T  R  C  T  L  F  L  N  Y  G  F  V  P  S  W  V  F  L  V  R  F  L   </second_frame>
            <third_frame>   I  C  P  C  I  F  I  K  R  L  G  S  E  F  V  I  I  A  V  Y  V  D  D  L  N  I  I  G  T  R  K  E  L  L  E  A  V  E  C  L  K  R  E  F  E  M  K  D  L  G  K  T  K  F  C  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  R  F  Y  M  D  N  S  H  P  L  S  T  P  M  V  V  R  S  L  D  I  N  T  D  P  F  R  P  Q  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  A  N  N  T  R  P  D  I  C  F  A  V  S  L  L  A  R  F  S  Y  S  P  T  K  R  H  W  N  G  V  K  H  I  L  R  Y  L  R  G  T  T  D  I  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  D  P  H  K  A  R  S  Q  T  G  Y  L  F  S  C  G  D  T  A  I  S  W  R  S  M  K  Q  T  L  V  A  T  S  S  N  H  V  E  I  I  A  I  H  E  A  S  R  E  C  V  W  L  R  S  M  T  H  H  I  Q  K  M  C  G  F  S  L  K  K  N  I  P  T  T  M  Y  E  D  N  A  A  C  I  A  Q  L  K  G  G  Y  I  K  G  D  R  T  K  H  I  S  P  K  F  F  F  T  H  D  L  Q  Q  N  G  E  I  E  V  Q  Q  I  R  S  S  D  N  L  A  D  L  F  I  K  A  L  P  T  S  T  F  E  K  L  R  Y  K  I  E  C  A  V  S  E  I  S  S  K  V  F  I  R  G  S  E  I  R  V  V  L  F  S  L  T  M  V  L  S  Q  V  G  F  S  W  *  G  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100" stop="1239"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICPCIFIKRLGSEFVIIAVYVDDLNIIGTRKELLEAVECLKREFEMKDLGKTKFCLGLQIENLSNGILVHQSTYTEKILKRFYMDNSHPLSTPMVVRSLDINTDPFRPQENDEELLGDETPYLSAIGALMYLANNTRPDICFAVSLLARFSYSPTKRHWNGVKHILRYLRGTTDIGLFYSNESKSELIGYADAGYLSDPHKARSQTGYLFSCGDTAISWRSMKQTLVATSSNHVEIIAIHEASRECVWLRSMTHHIQKMCGFSLKKNIPTTMYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHDLQQNGEIEVQQIRSSDNLADLFIKALPTSTFEKLRYKIECAVSEISSKVFIRGSEIRVVLFSLTMVLSQVGFSW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4367" PGL_stop="4735"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4367" e_stop="4735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="4367" e_stop="4735" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4367" stop="4735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGTTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTTTGGGTTGTACTATACAAGTATAATTACAGTTGAATCACATGCCATAGTAAACAAAAGGTTTAGTAATTTTAATGATTTTATCATTTGGCATG</gDNA_template>
            <first_frame> L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  V  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  C  T  I  Q  V  *  L  Q  L  N  H  M  P  *  *  T  K  G  L  V  I  L  M  I  L  S  F  G  M </first_frame>
            <second_frame>  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  F  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  D  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  R  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  N  Y  S  *  I  T  C  H  S  K  Q  K  V  *  *  F  *  *  F  Y  H  L  A   </second_frame>
            <third_frame>   M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  T  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  A  F  S  F  G  L  Y  Y  T  S  I  I  T  V  E  S  H  A  I  V  N  K  R  F  S  N  F  N  D  F  I  I  W  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4369" stop="4734"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETTNEGKVEYLYITTINVEKKIVHEKLPAFSFGLYYTSIITVESHAIVNKRFSNFNDFIIWH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="6113" PGL_stop="7329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6113" e_stop="7329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="6113" e_stop="7329" e_length="1217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6113" stop="6821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6778" stop="7329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACAAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATACAATTCAAGCTGAATTGCCTTCACTAGAAAAACGTGAAGTTTTTGAAACGATAATCTGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGAATTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGTTTTTCTCAAAGACTTGGCATTGATTATATGGAGACATATTCTCCAGTGGTACATGCAATCACCTTCAGATATCTCATAAATCTGGTAGTTCATGAAAAACTTGAAATGCTTCTAATGGACATTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCATCTATCTCTGTATGTATTGAAACAATCAGAAAGGATGTGGTACAATCATCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGATCCGATTTGTCCTTGCATTTTCATTAAACGGTCGAGGTCTGAATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGACACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAACATTTTTACATGGATAACTCACATCCATTGAGTACTCTAATGGTGGTAAGATCGCTTGACATTAATACATATCCATTTCGACCTCAAGAGAACGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATAGGTTTGTTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAAGCTATTCGTTTACATGTGGAGA</gDNA_template>
            <first_frame> K  *  C  N  K  M  K  I  L  S  Q  N  L  F  T  N  V  D  R  E  M  I  G  Q  N  G  R  I  Q  F  K  L  N  C  L  H  *  K  N  V  K  F  L  K  R  *  S  E  H  L  K  V  S  S  Q  W  G  T  N  E  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  K  F  F  S  K  T  W  H  *  L  Y  G  D  I  F  S  S  G  T  C  N  H  L  Q  I  S  H  K  S  G  S  S  *  K  T  *  N  A  S  N  G  H  C  H  S  L  S  I  W  L  I  G  P  Q  H  F  H  E  N  S  *  S  I  Q  S  A  *  S  I  Q  R  F  K  R  N  L  F  N  K  A  S  S  I  S  V  C  I  E  T  I  R  K  D  V  V  Q  S  S  E  *  I  F  V  K  E  R  V  Q  K  *  S  D  L  S  L  H  F  H  *  T  V  E  V  *  I  C  N  N  S  C  V  C  *  *  F  E  H  H  *  H  S  *  R  A  F  R  S  C  *  V  S  E  K  E  F  E  M  K  D  L  G  K  T  K  F  C  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  H  F  Y  M  D  N  S  H  P  L  S  T  L  M  V  V  R  S  L  D  I  N  T  Y  P  F  R  P  Q  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  A  N  N  T  R  P  D  I  C  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  L  R  Y  L  R  G  T  M  D  I  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  D  P  H  K  A  R  S  Q  T  S  Y  S  F  T  C  G   </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  Q  M  *  T  E  K  *  L  A  K  M  E  G  Y  N  S  S  *  I  A  F  T  R  K  T  *  S  F  *  N  D  N  L  N  T  *  R  Y  Q  A  S  G  V  Q  M  N  F  C  T  K  K  K  *  E  R  *  S  H  E  I  *  G  P  T  R  C  S  S  F  S  Q  R  L  G  I  D  Y  M  E  T  Y  S  P  V  V  H  A  I  T  F  R  Y  L  I  N  L  V  V  H  E  K  L  E  M  L  L  M  D  I  V  T  A  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  E  A  F  K  V  P  E  A  Y  K  D  S  R  E  T  C  S  I  K  L  H  L  S  L  Y  V  L  K  Q  S  E  R  M  W  Y  N  H  L  S  E  Y  L  L  K  K  G  Y  K  N  D  P  I  C  P  C  I  F  I  K  R  S  R  S  E  F  V  I  I  V  V  Y  V  D  D  L  N  I  I  D  T  R  K  E  L  L  E  A  V  E  C  L  K  K  N  L  K  *  K  I  S  A  R  Q  N  F  V  L  A  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  N  I  F  T  W  I  T  H  I  H  *  V  L  *  W  W  *  D  R  L  T  L  I  H  I  H  F  D  L  K  R  T  M  K  S  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  V  Y  W  Q  D  S  V  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  I  F  E  G  P  W  T  *  V  C  S  I  P  M  N  P  N  Q  N  *  L  V  T  Q  M  Q  G  I  Y  Q  I  R  I  K  L  D  H  K  Q  A  I  R  L  H  V  E  </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  P  K  S  V  H  K  C  R  Q  R  N  D  W  P  K  W  K  D  T  I  Q  A  E  L  P  S  L  E  K  R  E  V  F  E  T  I  I  *  T  P  E  G  I  K  P  V  G  Y  K  *  I  F  V  R  K  R  N  E  K  G  E  V  M  R  Y  K  A  R  L  V  A  Q  V  F  L  K  D  L  A  L  I  I  W  R  H  I  L  Q  W  Y  M  Q  S  P  S  D  I  S  *  I  W  *  F  M  K  N  L  K  C  F  *  W  T  L  S  Q  P  I  Y  M  A  H  W  T  T  T  F  S  *  K  F  L  K  H  S  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  S  F  I  Y  L  C  M  Y  *  N  N  Q  K  G  C  G  T  I  I  *  V  N  I  C  *  R  K  G  T  K  M  I  R  F  V  L  A  F  S  L  N  G  R  G  L  N  L  *  *  *  L  C  M  L  M  I  *  T  S  L  T  L  V  K  S  F  *  K  L  L  S  V  *  K  R  I  *  N  E  R  S  R  Q  D  K  I  L  S  W  P  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  T  F  L  H  G  *  L  T  S  I  E  Y  S  N  G  G  K  I  A  *  H  *  Y  I  S  I  S  T  S  R  E  R  *  R  A  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  G  K  I  Q  F  L  P  N  K  K  T  L  E  W  C  *  T  H  T  S  I  S  S  R  D  H  G  H  R  F  V  L  F  Q  *  I  Q  I  R  T  D  W  L  R  R  C  R  V  F  I  R  S  A  *  S  S  I  T  N  K  L  F  V  Y  M  W  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6803" stop="7327"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSEKEFEMKDLGKTKFCLGLQIENLSNGILVHQSTYTEKILKHFYMDNSHPLSTLMVVRSLDINTYPFRPQENDEELLGDETPYLSAIGALMYLANNTRPDICFAVSLLARFSSSPTKRHWNGVKHILRYLRGTMDIGLFYSNESKSELIGYADAGYLSDPHKARSQTSYSFTCG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6339" stop="6827"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPTRCSSFSQRLGIDYMETYSPVVHAITFRYLINLVVHEKLEMLLMDIVTAYLYGSLDHNIFMKIPEAFKVPEAYKDSRETCSIKLHLSLYVLKQSERMWYNHLSEYLLKKGYKNDPICPCIFIKRSRSEFVIIVVYVDDLNIIDTRKELLEAVECLKKNLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13193" PGL_stop="27255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13193" e_stop="13636"/>
            <exon e_start="14463" e_stop="14668"/>
            <exon e_start="14744" e_stop="14947"/>
            <exon e_start="15217" e_stop="15327"/>
            <exon e_start="15420" e_stop="15515"/>
            <exon e_start="15674" e_stop="15719"/>
            <exon e_start="15826" e_stop="15905"/>
            <exon e_start="16528" e_stop="16596"/>
            <exon e_start="16734" e_stop="16818"/>
            <exon e_start="19143" e_stop="19297"/>
            <exon e_start="19395" e_stop="19475"/>
            <exon e_start="23952" e_stop="24011"/>
            <exon e_start="24463" e_stop="24617"/>
            <exon e_start="26861" e_stop="27255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.843" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.992" e_score="0.995"/>
          <exon-intron don_prob="0.997" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.407" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13193" e_stop="13636" e_length="444"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="13637" i_stop="14462" i_length="826"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14463" e_stop="14668" e_length="206"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.843">
            <gDNA_intron_boundary i_start="14669" i_stop="14743" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="14744" e_stop="14947" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.992">
            <gDNA_intron_boundary i_start="14948" i_stop="15216" i_length="269"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15217" e_stop="15327" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.854">
            <gDNA_intron_boundary i_start="15328" i_stop="15419" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15420" e_stop="15515" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.407" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15516" i_stop="15673" i_length="158"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15674" e_stop="15719" e_length="46"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15720" i_stop="15825" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="15826" e_stop="15905" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.994">
            <gDNA_intron_boundary i_start="15906" i_stop="16527" i_length="622"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16528" e_stop="16596" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.816">
            <gDNA_intron_boundary i_start="16597" i_stop="16733" i_length="137"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16734" e_stop="16818" e_length="85"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.932">
            <gDNA_intron_boundary i_start="16819" i_stop="19142" i_length="2324"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="19143" e_stop="19297" e_length="155"/>
          </exon>
          <intron i_serial="10" don_prob="0.990" acc_prob="0.799">
            <gDNA_intron_boundary i_start="19298" i_stop="19394" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="19395" e_stop="19475" e_length="81"/>
          </exon>
          <intron i_serial="11" don_prob="0.952" acc_prob="0.955">
            <gDNA_intron_boundary i_start="19476" i_stop="23951" i_length="4476"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="23952" e_stop="24011" e_length="60"/>
          </exon>
          <intron i_serial="12" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="24012" i_stop="24462" i_length="451"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="24463" e_stop="24617" e_length="155"/>
          </exon>
          <intron i_serial="13" don_prob="0.883" acc_prob="0.994">
            <gDNA_intron_boundary i_start="24618" i_stop="26860" i_length="2243"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="26861" e_stop="27255" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13193" stop="13636"/>
              <exon start="14463" stop="14668"/>
              <exon start="14744" stop="14834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13201" stop="13636"/>
              <exon start="14463" stop="14512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280827" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13201" stop="13559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13204" stop="13636"/>
              <exon start="14463" stop="14613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13217" stop="13636"/>
              <exon start="14463" stop="14668"/>
              <exon start="14744" stop="14837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13256" stop="13580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13345" stop="13636"/>
              <exon start="14463" stop="14668"/>
              <exon start="14744" stop="14791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13471" stop="13636"/>
              <exon start="14463" stop="14668"/>
              <exon start="14744" stop="14947"/>
              <exon start="15217" stop="15327"/>
              <exon start="15420" stop="15503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13471" stop="13636"/>
              <exon start="14463" stop="14668"/>
              <exon start="14744" stop="14835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14476" stop="14668"/>
              <exon start="14744" stop="14905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14564" stop="14668"/>
              <exon start="14744" stop="14947"/>
              <exon start="15217" stop="15325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15247" stop="15327"/>
              <exon start="15420" stop="15515"/>
              <exon start="15674" stop="15719"/>
              <exon start="15826" stop="15905"/>
              <exon start="16528" stop="16596"/>
              <exon start="16734" stop="16818"/>
              <exon start="19143" stop="19297"/>
              <exon start="19395" stop="19470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19289" stop="19297"/>
              <exon start="19395" stop="19475"/>
              <exon start="23952" stop="24011"/>
              <exon start="24463" stop="24617"/>
              <exon start="26861" stop="27186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24484" stop="24617"/>
              <exon start="26861" stop="27212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26973" stop="27255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215508" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCCCTCCTTCTGAACTGAACTCTCCGCCCTCTGCATTTTTCACCATTGCTATTGTCTTCTTTCATCTTTAGAGTTCAAAGTATATATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAGAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAG : GGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACA : AGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCTAACGGCTGGTAAGAAAGCACTCTCAGATGGTGGAATTACTGAAGACATGATGGATGAATTGGATAAAAGAAGATGTGGAGTTTTAATTGGCTCTGCTATGGGTGGGATGAAG : GTTTTCAATGATGCAATAGAGGCTCTAAGGGTTTCCTATAGGAAGATGAATCCTTTTTGTGTCCCATTTGCAACTACAAACATGGGTTCTGCCATGCTTGCCATGGACCTG : GGATGGATGGGTCCAAATTATTCAATTTCAACAGCATGTGCAACAAGCAACTTCTGCATATTGAATGCCGCTAACCACATCATTAGAGGTGAAGCT : GACATGATGCTGTGTGGTGGATCAGATGCAGCAATTATACCAATTG : GATTGGGAGGATTTGTTGCTTGCAGAGCACTTTCACAGAGAAATACCGACCCTTCAAGAGCTTCTCGGCCTTGGGATAGT : AATCGCGATGGATTTGTCATGGGTGAAGGAGCTGGTGTCCTGCTTCTGGAAGAACTTGAGCATGCCAAG : CAAAGAGGTGCAACAATCTATGCTGAATTTCTAGGTGGAAGTTTTACTTGTGATGCTTATCACATGACTGAGCCTCATCCTAAAG : GAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTTAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAAAATCCAGAG : TTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAGGCTGTGGCAACTATCCAG : GCAATACGAACTGGTTGGGTTCATCCAAATATTAATCTTGAAAACCCAGATGAAGGCGTG : GATACAAATATACTTGTTGGTCCCATAAAGGAACGACTGGATATTAAGGTGGCATTATCTAATTCATTTGGATTTGGTGGCCACAACTCATCAATCTTATTTGCTCCTTACAAGTAGATCTCTCAAACAATGTTGATGCATCTGACAGATACAAG : GAATATTTGGAAGGATCCTTGATTCCCAGAGTTACTTGAAGGACACTCGTAGAAGAGGCCTCAGTCTCGAAGAATTTGTCTTCAGGAAGATAGTCTAATGACGGTGGTACTTCCCTCTGATATACAGAATTTGATTGTTGGAGAAAGAAGATGCCGAAGCAAAGAATGGGGGGAGGATCAAGTTTTTTTTATCTCCATTTCTCTTAGCTAAATTATACTTACTTAACTAAATTGTTTCTCTTACACATAGCAGCAAATGACCCTTAGGTGTTTGCATATGGGCCTTAATGCTAGTGTACTAGTTTCTTTGTATACCATATATATTCTGCAAATTGGACTTCTTGATATTTGAATGAACAAACTCTGAAGGACTTCCTCAAAACGAAAAAAATAAG</gDNA_template>
            <first_frame> P  P  P  S  E  L  N  S  P  P  S  A  F  F  T  I  A  I  V  F  F  H  L  *  S  S  K  Y  I  *  Y  I  K  G  L  Y  S  L  I  G  I  L  R  K  W  R  H  R  R  Y  R  H  G  *  L  G  H  A  C  Q  F  L  V  K  R  S  M  N  Y  M  V  F  L  G  F  I  S  L  N  A  N  G  L  F  Q  V  K  Q  P  K  G  F  S  *  T  P  N  P  I  V  L  L  H  F  Q  S  L  L  L  S  C  L  N  L  T  L  P  L  L  D  F  P  L  P  I  P  A  F  S  L  P  D  P  Q  L  I  L  L  Q  Q  K  L  S  L  M  L  K  Q  :  G  R  *  W  Q  L  H  P  N  R  P  W  K  P  H  Q  R  R  N  L  Q  P  R  K  G  E  L  L  *  Q  G  W  V  W  P  H  Q  L  V  M  I  P  T  R  F  M  K  T  C  L  K  V  S  V  A  *  V  K  *  K  L  L  I  V  L  S  I  Q  Q :   E  L  L  E  R  S  S  L  S  Q  L  M  A  G  L  Y  P  N  F  L  K  E  W  T  S  S  C  F  T  C  *  R  L  V  R  K  H  S  Q  M  V  E  L  L  K  T  *  W  M  N  W  I  K  E  D  V  E  F  *  L  A  L  L  W  V  G  *  R :   F  S  M  M  Q  *  R  L  *  G  F  P  I  G  R  *  I  L  F  V  S  H  L  Q  L  Q  T  W  V  L  P  C  L  P  W  T  W :   D  G  W  V  Q  I  I  Q  F  Q  Q  H  V  Q  Q  A  T  S  A  Y  *  M  P  L  T  T  S  L  E  V  K  L :   T  *  C  C  V  V  D  Q  M  Q  Q  L  Y  Q  L  :  D  W  E  D  L  L  L  A  E  H  F  H  R  E  I  P  T  L  Q  E  L  L  G  L  G  I  V :   I  A  M  D  L  S  W  V  K  E  L  V  S  C  F  W  K  N  L  S  M  P  S :   K  E  V  Q  Q  S  M  L  N  F  *  V  E  V  L  L  V  M  L  I  T  *  L  S  L  I  L  K  :  E  L  E  S  S  Y  V  *  R  R  H  *  L  S  Q  G  Y  P  R  K  M  *  T  T  L  M  R  M  Q  H  P  H  Q  Q  E  I  L  R  S  I  K  L  L  F  I  V  L  A  K  I  Q  S :   C  E  L  T  P  Q  N  L  W  L  V  T  C  L  E  L  L  V  L  L  R  L  W  Q  L  S  R :   Q  Y  E  L  V  G  F  I  Q  I  L  I  L  K  T  Q  M  K  A  W :   I  Q  I  Y  L  L  V  P  *  R  N  D  W  I  L  R  W  H  Y  L  I  H  L  D  L  V  A  T  T  H  Q  S  Y  L  L  L  T  S  R  S  L  K  Q  C  *  C  I  *  Q  I  Q   : G  I  F  G  R  I  L  D  S  Q  S  Y  L  K  D  T  R  R  R  G  L  S  L  E  E  F  V  F  R  K  I  V  *  *  R  W  Y  F  P  L  I  Y  R  I  *  L  L  E  K  E  D  A  E  A  K  N  G  G  R  I  K  F  F  L  S  P  F  L  L  A  K  L  Y  L  L  N  *  I  V  S  L  T  H  S  S  K  *  P  L  G  V  C  I  W  A  L  M  L  V  Y  *  F  L  C  I  P  Y  I  F  C  K  L  D  F  L  I  F  E  *  T  N  S  E  G  L  P  Q  N  E  K  N  K </first_frame>
            <second_frame>  P  L  L  L  N  *  T  L  R  P  L  H  F  S  P  L  L  L  S  S  F  I  F  R  V  Q  S  I  Y  N  I  *  R  A  C  I  V  *  S  E  F  *  E  N  G  V  I  D  G  I  V  M  D  D  W  V  M  H  V  S  S  W  *  K  G  A  *  I  T  W  F  F  W  D  L  *  V  *  M  Q  M  G  Y  S  K  *  N  N  Q  R  G  F  H  K  L  Q  I  Q  *  C  S  Y  I  S  N  L  F  F  F  L  V  S  T  *  P  Y  H  Y  W  I  F  L  F  Q  F  L  L  S  L  Y  R  I  R  S  *  S  S  S  N  K  N  Y  L  L  C  S  N  R :   G  G  N  G  N  C  I  R  I  G  H  G  S  R  T  K  E  E  T  S  N  Q  G  K  A  S  C  C  D  R  D  G  C  G  H  I  S  W  S  *  S  P  H  V  L  *  K  P  A  *  R  C  Q  W  H  K  *  N  R  S  F  *  L  F  S  V  S  N   : K  N  C  W  R  D  Q  V  F  L  N  *  W  L  D  C  T  Q  T  F  *  K  N  G  Q  V  H  A  L  H  A  N  G  W  *  E  S  T  L  R  W  W  N  Y  *  R  H  D  G  *  I  G  *  K  K  M  W  S  F  N  W  L  C  Y  G  W  D  E   : G  F  Q  *  C  N  R  G  S  K  G  F  L  *  E  D  E  S  F  L  C  P  I  C  N  Y  K  H  G  F  C  H  A  C  H  G  P   : G  M  D  G  S  K  L  F  N  F  N  S  M  C  N  K  Q  L  L  H  I  E  C  R  *  P  H  H  *  R  *  S   : *  H  D  A  V  W  W  I  R  C  S  N  Y  T  N  W :   I  G  R  I  C  C  L  Q  S  T  F  T  E  K  Y  R  P  F  K  S  F  S  A  L  G  *   : *  S  R  W  I  C  H  G  *  R  S  W  C  P  A  S  G  R  T  *  A  C  Q   : A  K  R  C  N  N  L  C  *  I  S  R  W  K  F  Y  L  *  C  L  S  H  D  *  A  S  S  *  R :   N  W  S  H  P  M  C  R  E  G  I  S  S  V  R  G  I  Q  G  R  C  E  L  H  *  C  A  C  N  I  H  T  S  R  R  S  *  G  V  S  S  S  C  S  L  F  W  P  K  S  R   : V  A  S  *  L  H  K  I  Y  G  W  S  P  A  W  S  C  W  C  C  *  G  C  G  N  Y  P   : G  N  T  N  W  L  G  S  S  K  Y  *  S  *  K  P  R  *  R  R   : G  Y  K  Y  T  C  W  S  H  K  G  T  T  G  Y  *  G  G  I  I  *  F  I  W  I  W  W  P  Q  L  I  N  L  I  C  S  L  Q  V  D  L  S  N  N  V  D  A  S  D  R  Y  K  :  E  Y  L  E  G  S  L  I  P  R  V  T  *  R  T  L  V  E  E  A  S  V  S  K  N  L  S  S  G  R  *  S  N  D  G  G  T  S  L  *  Y  T  E  F  D  C  W  R  K  K  M  P  K  Q  R  M  G  G  G  S  S  F  F  Y  L  H  F  S  *  L  N  Y  T  Y  L  T  K  L  F  L  L  H  I  A  A  N  D  P  *  V  F  A  Y  G  P  *  C  *  C  T  S  F  F  V  Y  H  I  Y  S  A  N  W  T  S  *  Y  L  N  E  Q  T  L  K  D  F  L  K  T  K  K  I   </second_frame>
            <third_frame>   P  S  F  *  T  E  L  S  A  L  C  I  F  H  H  C  Y  C  L  L  S  S  L  E  F  K  V  Y  I  I  Y  K  G  L  V  *  F  D  R  N  F  K  K  M  A  S  S  T  V  S  S  W  M  I  G  S  C  M  S  V  P  G  K  K  E  H  E  L  H  G  F  F  G  I  Y  K  S  K  C  K  W  A  I  P  S  K  T  T  K  G  V  F  I  N  S  K  S  N  S  A  L  T  F  P  I  S  S  S  F  L  S  Q  P  N  L  T  I  T  G  F  S  S  S  N  S  C  F  L  F  T  G  S  A  A  N  P  P  P  T  K  I  I  S  Y  A  Q  T   : G  E  V  M  A  I  A  S  E  S  A  M  E  A  A  P  K  K  K  P  P  T  K  E  R  R  V  V  V  T  G  M  G  V  A  T  S  V  G  H  D  P  H  T  F  Y  E  N  L  L  E  G  V  S  G  I  S  E  I  E  A  F  D  C  S  Q  Y  P  T  :  R  I  A  G  E  I  K  S  F  S  T  D  G  W  I  V  P  K  L  S  K  R  M  D  K  F  M  L  Y  M  L  T  A  G  K  K  A  L  S  D  G  G  I  T  E  D  M  M  D  E  L  D  K  R  R  C  G  V  L  I  G  S  A  M  G  G  M  K  :  V  F  N  D  A  I  E  A  L  R  V  S  Y  R  K  M  N  P  F  C  V  P  F  A  T  T  N  M  G  S  A  M  L  A  M  D  L  :  G  W  M  G  P  N  Y  S  I  S  T  A  C  A  T  S  N  F  C  I  L  N  A  A  N  H  I  I  R  G  E  A  :  D  M  M  L  C  G  G  S  D  A  A  I  I  P  I   : G  L  G  G  F  V  A  C  R  A  L  S  Q  R  N  T  D  P  S  R  A  S  R  P  W  D  S  :  N  R  D  G  F  V  M  G  E  G  A  G  V  L  L  L  E  E  L  E  H  A  K  :  Q  R  G  A  T  I  Y  A  E  F  L  G  G  S  F  T  C  D  A  Y  H  M  T  E  P  H  P  K   : G  T  G  V  I  L  C  V  E  K  A  L  A  Q  S  G  V  S  K  E  D  V  N  Y  I  N  A  H  A  T  S  T  P  A  G  D  L  K  E  Y  Q  A  L  V  H  C  F  G  Q  N  P  E  :  L  R  V  N  S  T  K  S  M  V  G  H  L  L  G  A  A  G  A  V  E  A  V  A  T  I  Q  :  A  I  R  T  G  W  V  H  P  N  I  N  L  E  N  P  D  E  G  V  :  D  T  N  I  L  V  G  P  I  K  E  R  L  D  I  K  V  A  L  S  N  S  F  G  F  G  G  H  N  S  S  I  L  F  A  P  Y  K  *  I  S  Q  T  M  L  M  H  L  T  D  T  R :   N  I  W  K  D  P  *  F  P  E  L  L  E  G  H  S  *  K  R  P  Q  S  R  R  I  C  L  Q  E  D  S  L  M  T  V  V  L  P  S  D  I  Q  N  L  I  V  G  E  R  R  C  R  S  K  E  W  G  E  D  Q  V  F  F  I  S  I  S  L  S  *  I  I  L  T  *  L  N  C  F  S  Y  T  *  Q  Q  M  T  L  R  C  L  H  M  G  L  N  A  S  V  L  V  S  L  Y  T  I  Y  I  L  Q  I  G  L  L  D  I  *  M  N  K  L  *  R  T  S  S  K  R  K  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13303" stop="13636"/>
                    <exon start="14463" stop="14668"/>
                    <exon start="14744" stop="14947"/>
                    <exon start="15217" stop="15327"/>
                    <exon start="15420" stop="15515"/>
                    <exon start="15674" stop="15719"/>
                    <exon start="15826" stop="15905"/>
                    <exon start="16528" stop="16596"/>
                    <exon start="16734" stop="16818"/>
                    <exon start="19143" stop="19297"/>
                    <exon start="19395" stop="19475"/>
                    <exon start="23952" stop="24011"/>
                    <exon start="24463" stop="24579"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1641</number_coding_nucleotides>
                  <number_encoded_amino_acids>547</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDRNFKKMASSTVSSWMIGSCMSVPGKKEHELHGFFGIYKSKCKWAIPSKTTKGVFINSKSNSALTFPISSSFLSQPNLTITGFSSSNSCFLFTGSAANPPPTKIISYAQTGEVMAIASESAMEAAPKKKPPTKERRVVVTGMGVATSVGHDPHTFYENLLEGVSGISEIEAFDCSQYPTRIAGEIKSFSTDGWIVPKLSKRMDKFMLYMLTAGKKALSDGGITEDMMDELDKRRCGVLIGSAMGGMKVFNDAIEALRVSYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADMMLCGGSDAAIIPIGLGGFVACRALSQRNTDPSRASRPWDSNRDGFVMGEGAGVLLLEELEHAKQRGATIYAEFLGGSFTCDAYHMTEPHPKGTGVILCVEKALAQSGVSKEDVNYINAHATSTPAGDLKEYQALVHCFGQNPELRVNSTKSMVGHLLGAAGAVEAVATIQAIRTGWVHPNINLENPDEGVDTNILVGPIKERLDIKVALSNSFGFGGHNSSILFAPYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16733" e_stop="16818"/>
            <exon e_start="19143" e_stop="19297"/>
            <exon e_start="19395" e_stop="19475"/>
            <exon e_start="23952" e_stop="24011"/>
            <exon e_start="24463" e_stop="24617"/>
            <exon e_start="26861" e_stop="27255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.932" e_score="0.965"/>
          <exon-intron don_prob="0.990" acc_prob="0.799" e_score="0.994"/>
          <exon-intron don_prob="0.952" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="16733" e_stop="16818" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.932">
            <gDNA_intron_boundary i_start="16819" i_stop="19142" i_length="2324"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="19143" e_stop="19297" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.799">
            <gDNA_intron_boundary i_start="19298" i_stop="19394" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19395" e_stop="19475" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.955">
            <gDNA_intron_boundary i_start="19476" i_stop="23951" i_length="4476"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23952" e_stop="24011" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="24012" i_stop="24462" i_length="451"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24463" e_stop="24617" e_length="155"/>
          </exon>
          <intron i_serial="5" don_prob="0.883" acc_prob="0.994">
            <gDNA_intron_boundary i_start="24618" i_stop="26860" i_length="2243"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26861" e_stop="27255" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16733" stop="16818"/>
              <exon start="19143" stop="19297"/>
              <exon start="19395" stop="19475"/>
              <exon start="23952" stop="24011"/>
              <exon start="24463" stop="24617"/>
              <exon start="26861" stop="27100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418578" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19289" stop="19297"/>
              <exon start="19395" stop="19475"/>
              <exon start="23952" stop="24011"/>
              <exon start="24463" stop="24617"/>
              <exon start="26861" stop="27186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24484" stop="24617"/>
              <exon start="26861" stop="27212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26973" stop="27255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215508" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAAGAGGTGCAACAATCTATGCTGAATTTCTAGGTGGAAGTTTTACTTGTGATGCTTATCACATGACTGAGCCTCATCCTAAAG : GAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTTAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAAAATCCAGAG : TTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAGGCTGTGGCAACTATCCAG : GCAATACGAACTGGTTGGGTTCATCCAAATATTAATCTTGAAAACCCAGATGAAGGCGTG : GATACAAATATACTTGTTGGTCCCATAAAGGAACGACTGGATATTAAGGTGGCATTATCTAATTCATTTGGATTTGGTGGCCACAACTCATCAATCTTATTTGCTCCTTACAAGTAGATCTCTCAAACAATGTTGATGCATCTGACAGATACAAG : GAATATTTGGAAGGATCCTTGATTCCCAGAGTTACTTGAAGGACACTCGTAGAAGAGGCCTCAGTCTCGAAGAATTTGTCTTCAGGAAGATAGTCTAATGACGGTGGTACTTCCCTCTGATATACAGAATTTGATTGTTGGAGAAAGAAGATGCCGAAGCAAAGAATGGGGGGAGGATCAAGTTTTTTTTATCTCCATTTCTCTTAGCTAAATTATACTTACTTAACTAAATTGTTTCTCTTACACATAGCAGCAAATGACCCTTAGGTGTTTGCATATGGGCCTTAATGCTAGTGTACTAGTTTCTTTGTATACCATATATATTCTGCAAATTGGACTTCTTGATATTTGAATGAACAAACTCTGAAGGACTTCCTCAAAACGAAAAAAATAAG</gDNA_template>
            <first_frame> A  K  R  C  N  N  L  C  *  I  S  R  W  K  F  Y  L  *  C  L  S  H  D  *  A  S  S  *  R :   N  W  S  H  P  M  C  R  E  G  I  S  S  V  R  G  I  Q  G  R  C  E  L  H  *  C  A  C  N  I  H  T  S  R  R  S  *  G  V  S  S  S  C  S  L  F  W  P  K  S  R   : V  A  S  *  L  H  K  I  Y  G  W  S  P  A  W  S  C  W  C  C  *  G  C  G  N  Y  P   : G  N  T  N  W  L  G  S  S  K  Y  *  S  *  K  P  R  *  R  R   : G  Y  K  Y  T  C  W  S  H  K  G  T  T  G  Y  *  G  G  I  I  *  F  I  W  I  W  W  P  Q  L  I  N  L  I  C  S  L  Q  V  D  L  S  N  N  V  D  A  S  D  R  Y  K  :  E  Y  L  E  G  S  L  I  P  R  V  T  *  R  T  L  V  E  E  A  S  V  S  K  N  L  S  S  G  R  *  S  N  D  G  G  T  S  L  *  Y  T  E  F  D  C  W  R  K  K  M  P  K  Q  R  M  G  G  G  S  S  F  F  Y  L  H  F  S  *  L  N  Y  T  Y  L  T  K  L  F  L  L  H  I  A  A  N  D  P  *  V  F  A  Y  G  P  *  C  *  C  T  S  F  F  V  Y  H  I  Y  S  A  N  W  T  S  *  Y  L  N  E  Q  T  L  K  D  F  L  K  T  K  K  I   </first_frame>
            <second_frame>  Q  R  G  A  T  I  Y  A  E  F  L  G  G  S  F  T  C  D  A  Y  H  M  T  E  P  H  P  K   : G  T  G  V  I  L  C  V  E  K  A  L  A  Q  S  G  V  S  K  E  D  V  N  Y  I  N  A  H  A  T  S  T  P  A  G  D  L  K  E  Y  Q  A  L  V  H  C  F  G  Q  N  P  E  :  L  R  V  N  S  T  K  S  M  V  G  H  L  L  G  A  A  G  A  V  E  A  V  A  T  I  Q  :  A  I  R  T  G  W  V  H  P  N  I  N  L  E  N  P  D  E  G  V  :  D  T  N  I  L  V  G  P  I  K  E  R  L  D  I  K  V  A  L  S  N  S  F  G  F  G  G  H  N  S  S  I  L  F  A  P  Y  K  *  I  S  Q  T  M  L  M  H  L  T  D  T  R :   N  I  W  K  D  P  *  F  P  E  L  L  E  G  H  S  *  K  R  P  Q  S  R  R  I  C  L  Q  E  D  S  L  M  T  V  V  L  P  S  D  I  Q  N  L  I  V  G  E  R  R  C  R  S  K  E  W  G  E  D  Q  V  F  F  I  S  I  S  L  S  *  I  I  L  T  *  L  N  C  F  S  Y  T  *  Q  Q  M  T  L  R  C  L  H  M  G  L  N  A  S  V  L  V  S  L  Y  T  I  Y  I  L  Q  I  G  L  L  D  I  *  M  N  K  L  *  R  T  S  S  K  R  K  K  *  </second_frame>
            <third_frame>   K  E  V  Q  Q  S  M  L  N  F  *  V  E  V  L  L  V  M  L  I  T  *  L  S  L  I  L  K  :  E  L  E  S  S  Y  V  *  R  R  H  *  L  S  Q  G  Y  P  R  K  M  *  T  T  L  M  R  M  Q  H  P  H  Q  Q  E  I  L  R  S  I  K  L  L  F  I  V  L  A  K  I  Q  S :   C  E  L  T  P  Q  N  L  W  L  V  T  C  L  E  L  L  V  L  L  R  L  W  Q  L  S  R :   Q  Y  E  L  V  G  F  I  Q  I  L  I  L  K  T  Q  M  K  A  W :   I  Q  I  Y  L  L  V  P  *  R  N  D  W  I  L  R  W  H  Y  L  I  H  L  D  L  V  A  T  T  H  Q  S  Y  L  L  L  T  S  R  S  L  K  Q  C  *  C  I  *  Q  I  Q   : G  I  F  G  R  I  L  D  S  Q  S  Y  L  K  D  T  R  R  R  G  L  S  L  E  E  F  V  F  R  K  I  V  *  *  R  W  Y  F  P  L  I  Y  R  I  *  L  L  E  K  E  D  A  E  A  K  N  G  G  R  I  K  F  F  L  S  P  F  L  L  A  K  L  Y  L  L  N  *  I  V  S  L  T  H  S  S  K  *  P  L  G  V  C  I  W  A  L  M  L  V  Y  *  F  L  C  I  P  Y  I  F  C  K  L  D  F  L  I  F  E  *  T  N  S  E  G  L  P  Q  N  E  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16734" stop="16818"/>
                    <exon start="19143" stop="19297"/>
                    <exon start="19395" stop="19475"/>
                    <exon start="23952" stop="24011"/>
                    <exon start="24463" stop="24579"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRGATIYAEFLGGSFTCDAYHMTEPHPKGTGVILCVEKALAQSGVSKEDVNYINAHATSTPAGDLKEYQALVHCFGQNPELRVNSTKSMVGHLLGAAGAVEAVATIQAIRTGWVHPNINLENPDEGVDTNILVGPIKERLDIKVALSNSFGFGGHNSSILFAPYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="23222" e_stop="23828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="23222" e_stop="23828" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23222" stop="23828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23223" stop="23735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGAAAGAACATATTCATGCCTGTAGAAGACATTTTCAAAGGAACATTGGTGGGAGCCTTGAAACAATTCACAGCAGGAGCTTTCCATAGTGGTTAATTATTTTATGTTAGATATTGTTGCTTGCTGCTGTGAGTTACTCTAGCCTGAAGTTAAGAACCCAAAAGAACTGGGAGTAGAATAACTTTGTCAACTTAAATTATTTAAATAGATGTTGACTGAAGAAGCAAAAGAGATGAACATTATCTAATTTTTCTTTACCATGTGGGTATAGTTTTTCTTTTTGGCTACGAGAGTAGCTATGGCGATTGTTTTAGGATAAGTGATTACCTATTTTGAGATAATTCAAAGACAATTTTCTGCTGCTAGATAGTTCCTTGCAGTTTGTTGGTGCTGCACAGTGTAATTGAAGTTAGATTAAAGTTTAATCATATCATCTTTGTTCTTGAGCTTCATTATAATCTGCCTTGACAGTGGAAAGGATGCTGAAGATAGACACTCCTTGGACATTTACTTGAGCATGTTGCAGTAACATGTTTTTGTTATAGTTTATTTGTGATAATGATTAATTAATCTGATAGTACATAGATGTTGCAGAACTTATTCT</gDNA_template>
            <first_frame> F  *  K  N  I  F  M  P  V  E  D  I  F  K  G  T  L  V  G  A  L  K  Q  F  T  A  G  A  F  H  S  G  *  L  F  Y  V  R  Y  C  C  L  L  L  *  V  T  L  A  *  S  *  E  P  K  R  T  G  S  R  I  T  L  S  T  *  I  I  *  I  D  V  D  *  R  S  K  R  D  E  H  Y  L  I  F  L  Y  H  V  G  I  V  F  L  F  G  Y  E  S  S  Y  G  D  C  F  R  I  S  D  Y  L  F  *  D  N  S  K  T  I  F  C  C  *  I  V  P  C  S  L  L  V  L  H  S  V  I  E  V  R  L  K  F  N  H  I  I  F  V  L  E  L  H  Y  N  L  P  *  Q  W  K  G  C  *  R  *  T  L  L  G  H  L  L  E  H  V  A  V  T  C  F  C  Y  S  L  F  V  I  M  I  N  *  S  D  S  T  *  M  L  Q  N  L  F  </first_frame>
            <second_frame>  F  E  R  T  Y  S  C  L  *  K  T  F  S  K  E  H  W  W  E  P  *  N  N  S  Q  Q  E  L  S  I  V  V  N  Y  F  M  L  D  I  V  A  C  C  C  E  L  L  *  P  E  V  K  N  P  K  E  L  G  V  E  *  L  C  Q  L  K  L  F  K  *  M  L  T  E  E  A  K  E  M  N  I  I  *  F  F  F  T  M  W  V  *  F  F  F  L  A  T  R  V  A  M  A  I  V  L  G  *  V  I  T  Y  F  E  I  I  Q  R  Q  F  S  A  A  R  *  F  L  A  V  C  W  C  C  T  V  *  L  K  L  D  *  S  L  I  I  S  S  L  F  L  S  F  I  I  I  C  L  D  S  G  K  D  A  E  D  R  H  S  L  D  I  Y  L  S  M  L  Q  *  H  V  F  V  I  V  Y  L  *  *  *  L  I  N  L  I  V  H  R  C  C  R  T  Y  S </second_frame>
            <third_frame>   L  K  E  H  I  H  A  C  R  R  H  F  Q  R  N  I  G  G  S  L  E  T  I  H  S  R  S  F  P  *  W  L  I  I  L  C  *  I  L  L  L  A  A  V  S  Y  S  S  L  K  L  R  T  Q  K  N  W  E  *  N  N  F  V  N  L  N  Y  L  N  R  C  *  L  K  K  Q  K  R  *  T  L  S  N  F  S  L  P  C  G  Y  S  F  S  F  W  L  R  E  *  L  W  R  L  F  *  D  K  *  L  P  I  L  R  *  F  K  D  N  F  L  L  L  D  S  S  L  Q  F  V  G  A  A  Q  C  N  *  S  *  I  K  V  *  S  Y  H  L  C  S  *  A  S  L  *  S  A  L  T  V  E  R  M  L  K  I  D  T  P  W  T  F  T  *  A  C  C  S  N  M  F  L  L  *  F  I  C  D  N  D  *  L  I  *  *  Y  I  D  V  A  E  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0025K09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="18754" e_stop="18776"/>
            <exon e_start="19015" e_stop="19734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.356" acc_prob="0.000" e_score="0.522"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.522">
            <gDNA_exon_boundary e_start="18754" e_stop="18776" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.356" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18777" i_stop="19014" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="19015" e_stop="19734" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18754" stop="18776"/>
              <exon start="19015" stop="19734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18754" stop="18776"/>
              <exon start="19015" stop="19729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433505" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAAACTCCTGATGGGTTCCT : TTGCACAATTTGTAGCTTACTCAGAACAGAATTTAGTATAACATAATAAGAATGCACAATCTCATGTTTACTGAGATATACAATTAAGAAAGGAAACCTTTGAACTCTTCTATTCCCTAAACTAGCAGGAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTTAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAAAATCCAGAGGTTAGATTGAATTTCTCTCATTTAACTACTGTGTTCATGCCAATCCTCTCAGGTTTTTGGTTCAGCTGTTTAATCAGCCACTGCTCTATGTTTTCAGTTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAGGCTGTGGCAACTATCCAGGTGCTTTTATTTCATAACCCCTCAAAGTTTGCTGCAGCTGTGGTTCAGTTGCTTTCTAGTTTCTTGTGTAACATTTCATCCAACTATTTTCTTGCATATAGATATCCTGGCTGCAGATTCTGATATTTCTGCTTGTGTATCCTGTGGGTTGATTTGGATATTATTTTGGTGTCATACTGTTGAATAGACCAAATCATTCTGTTATTTATGTAAGCATCTAATTGAACTATATAACGTCATTAGCATCTCTACTATTTTT</gDNA_template>
            <first_frame> H  K  T  P  D  G  F  L :   C  T  I  C  S  L  L  R  T  E  F  S  I  T  *  *  E  C  T  I  S  C  L  L  R  Y  T  I  K  K  G  N  L  *  T  L  L  F  P  K  L  A  G  T  G  V  I  L  C  V  E  K  A  L  A  Q  S  G  V  S  K  E  D  V  N  Y  I  N  A  H  A  T  S  T  P  A  G  D  L  K  E  Y  Q  A  L  V  H  C  F  G  Q  N  P  E  V  R  L  N  F  S  H  L  T  T  V  F  M  P  I  L  S  G  F  W  F  S  C  L  I  S  H  C  S  M  F  S  V  A  S  *  L  H  K  I  Y  G  W  S  P  A  W  S  C  W  C  C  *  G  C  G  N  Y  P  G  A  F  I  S  *  P  L  K  V  C  C  S  C  G  S  V  A  F  *  F  L  V  *  H  F  I  Q  L  F  S  C  I  *  I  S  W  L  Q  I  L  I  F  L  L  V  Y  P  V  G  *  F  G  Y  Y  F  G  V  I  L  L  N  R  P  N  H  S  V  I  Y  V  S  I  *  L  N  Y  I  T  S  L  A  S  L  L  F   </first_frame>
            <second_frame>  T  K  L  L  M  G  S   : F  A  Q  F  V  A  Y  S  E  Q  N  L  V  *  H  N  K  N  A  Q  S  H  V  Y  *  D  I  Q  L  R  K  E  T  F  E  L  F  Y  S  L  N  *  Q  E  L  E  S  S  Y  V  *  R  R  H  *  L  S  Q  G  Y  P  R  K  M  *  T  T  L  M  R  M  Q  H  P  H  Q  Q  E  I  L  R  S  I  K  L  L  F  I  V  L  A  K  I  Q  R  L  D  *  I  S  L  I  *  L  L  C  S  C  Q  S  S  Q  V  F  G  S  A  V  *  S  A  T  A  L  C  F  Q  L  R  V  N  S  T  K  S  M  V  G  H  L  L  G  A  A  G  A  V  E  A  V  A  T  I  Q  V  L  L  F  H  N  P  S  K  F  A  A  A  V  V  Q  L  L  S  S  F  L  C  N  I  S  S  N  Y  F  L  A  Y  R  Y  P  G  C  R  F  *  Y  F  C  L  C  I  L  W  V  D  L  D  I  I  L  V  S  Y  C  *  I  D  Q  I  I  L  L  F  M  *  A  S  N  *  T  I  *  R  H  *  H  L  Y  Y  F  </second_frame>
            <third_frame>   Q  N  S  *  W  V  P  :  L  H  N  L  *  L  T  Q  N  R  I  *  Y  N  I  I  R  M  H  N  L  M  F  T  E  I  Y  N  *  E  R  K  P  L  N  S  S  I  P  *  T  S  R  N  W  S  H  P  M  C  R  E  G  I  S  S  V  R  G  I  Q  G  R  C  E  L  H  *  C  A  C  N  I  H  T  S  R  R  S  *  G  V  S  S  S  C  S  L  F  W  P  K  S  R  G  *  I  E  F  L  S  F  N  Y  C  V  H  A  N  P  L  R  F  L  V  Q  L  F  N  Q  P  L  L  Y  V  F  S  C  E  L  T  P  Q  N  L  W  L  V  T  C  L  E  L  L  V  L  L  R  L  W  Q  L  S  R  C  F  Y  F  I  T  P  Q  S  L  L  Q  L  W  F  S  C  F  L  V  S  C  V  T  F  H  P  T  I  F  L  H  I  D  I  L  A  A  D  S  D  I  S  A  C  V  S  C  G  L  I  W  I  L  F  W  C  H  T  V  E  *  T  K  S  F  C  Y  L  C  K  H  L  I  E  L  Y  N  V  I  S  I  S  T  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19303" stop="19662"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEFLSFNYCVHANPLRFLVQLFNQPLLYVFSCELTPQNLWLVTCLELLVLLRLWQLSRCFYFITPQSLLQLWFSCFLVSCVTFHPTIFLHIDILAADSDISACVSCGLIWILFWCHTVE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19118" stop="19405"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLLFPKLAGTGVILCVEKALAQSGVSKEDVNYINAHATSTPAGDLKEYQALVHCFGQNPEVRLNFSHLTTVFMPILSGFWFSCLISHCSMFSVAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="23685" PGL_stop="23176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23685" e_stop="23176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="23685" e_stop="23176" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23685" stop="23176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279149" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTATAATGAAGCTCAAGAACAAAGATGATATGATTAAACTTTAATCTAACTTCAATTACACTGTGCAGCACCAACAAACTGCAAGGAACTATCTAGCAGCAGAAAATTGTCTTTGAATTATCTCAAAATAGGTAATCACTTATCCTAAAACAATCGCCATAGCTACTCTCGTAGCCAAAAAGAAAAACTATACCCACATGGTAAAGAAAAATTAGATAATGTTCATCTCTTTTGCTTCTTCAGTCAACATCTATTTAAATAATTTAAGTTGACAAAGTTATTCTACTCCCAGTTCTTTTGGGTTCTTAACTTCAGGCTAGAGTAACTCACAGCAGCAAGCAACAATATCTAACATAAAATAATTAACCACTATGGAAAGCTCCTGCTGTGAATTGTTTCAAGGCTCCCACCAATGTTCCTTTGAAAATGTCTTCTACAGGCATGAATATGTTCTTTCAAAACTCAGATTACATATACTTTTATGAATATGATGCGACTTCCTTGTAC</gDNA_template>
            <first_frame> R  L  *  *  S  S  R  T  K  M  I  *  L  N  F  N  L  T  S  I  T  L  C  S  T  N  K  L  Q  G  T  I  *  Q  Q  K  I  V  F  E  L  S  Q  N  R  *  S  L  I  L  K  Q  S  P  *  L  L  S  *  P  K  R  K  T  I  P  T  W  *  R  K  I  R  *  C  S  S  L  L  L  L  Q  S  T  S  I  *  I  I  *  V  D  K  V  I  L  L  P  V  L  L  G  S  *  L  Q  A  R  V  T  H  S  S  K  Q  Q  Y  L  T  *  N  N  *  P  L  W  K  A  P  A  V  N  C  F  K  A  P  T  N  V  P  L  K  M  S  S  T  G  M  N  M  F  F  Q  N  S  D  Y  I  Y  F  Y  E  Y  D  A  T  S  L  Y </first_frame>
            <second_frame>  D  Y  N  E  A  Q  E  Q  R  *  Y  D  *  T  L  I  *  L  Q  L  H  C  A  A  P  T  N  C  K  E  L  S  S  S  R  K  L  S  L  N  Y  L  K  I  G  N  H  L  S  *  N  N  R  H  S  Y  S  R  S  Q  K  E  K  L  Y  P  H  G  K  E  K  L  D  N  V  H  L  F  C  F  F  S  Q  H  L  F  K  *  F  K  L  T  K  L  F  Y  S  Q  F  F  W  V  L  N  F  R  L  E  *  L  T  A  A  S  N  N  I  *  H  K  I  I  N  H  Y  G  K  L  L  L  *  I  V  S  R  L  P  P  M  F  L  *  K  C  L  L  Q  A  *  I  C  S  F  K  T  Q  I  T  Y  T  F  M  N  M  M  R  L  P  C   </second_frame>
            <third_frame>   I  I  M  K  L  K  N  K  D  D  M  I  K  L  *  S  N  F  N  Y  T  V  Q  H  Q  Q  T  A  R  N  Y  L  A  A  E  N  C  L  *  I  I  S  K  *  V  I  T  Y  P  K  T  I  A  I  A  T  L  V  A  K  K  K  N  Y  T  H  M  V  K  K  N  *  I  M  F  I  S  F  A  S  S  V  N  I  Y  L  N  N  L  S  *  Q  S  Y  S  T  P  S  S  F  G  F  L  T  S  G  *  S  N  S  Q  Q  Q  A  T  I  S  N  I  K  *  L  T  T  M  E  S  S  C  C  E  L  F  Q  G  S  H  Q  C  S  F  E  N  V  F  Y  R  H  E  Y  V  L  S  K  L  R  L  H  I  L  L  *  I  *  C  D  F  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0025K09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="54427" PGL_stop="47250"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53584" e_stop="53448"/>
            <exon e_start="53346" e_stop="53275"/>
            <exon e_start="52287" e_stop="52174"/>
            <exon e_start="52082" e_stop="51921"/>
            <exon e_start="51833" e_stop="51705"/>
            <exon e_start="51531" e_stop="51430"/>
            <exon e_start="51339" e_stop="51260"/>
            <exon e_start="50124" e_stop="49975"/>
            <exon e_start="49834" e_stop="48953"/>
            <exon e_start="47272" e_stop="47250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.976" e_score="0.992"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.700" e_score="0.997"/>
          <exon-only e_score="0.739"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53584" e_stop="53448" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53447" i_stop="53347" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53346" e_stop="53275" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.952">
            <gDNA_intron_boundary i_start="53274" i_stop="52288" i_length="987"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52287" e_stop="52174" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.973">
            <gDNA_intron_boundary i_start="52173" i_stop="52083" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52082" e_stop="51921" e_length="162"/>
          </exon>
          <intron i_serial="4" don_prob="0.821" acc_prob="0.982">
            <gDNA_intron_boundary i_start="51920" i_stop="51834" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="51833" e_stop="51705" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.976">
            <gDNA_intron_boundary i_start="51704" i_stop="51532" i_length="173"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51531" e_stop="51430" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51429" i_stop="51340" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51339" e_stop="51260" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.978" acc_prob="0.980">
            <gDNA_intron_boundary i_start="51259" i_stop="50125" i_length="1135"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="50124" e_stop="49975" e_length="150"/>
          </exon>
          <intron i_serial="8" don_prob="0.872" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49974" i_stop="49835" i_length="140"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="49834" e_stop="48953" e_length="882"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.700">
            <gDNA_intron_boundary i_start="48952" i_stop="47273" i_length="1680"/>
          </intron>
          <exon e_serial="10" e_score="0.739">
            <gDNA_exon_boundary e_start="47272" e_stop="47250" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53584" stop="53448"/>
              <exon start="53346" stop="53275"/>
              <exon start="52287" stop="52174"/>
              <exon start="52082" stop="51929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53535" stop="53448"/>
              <exon start="53346" stop="53275"/>
              <exon start="52287" stop="52174"/>
              <exon start="52082" stop="51921"/>
              <exon start="51833" stop="51705"/>
              <exon start="51531" stop="51482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53295" stop="53275"/>
              <exon start="52287" stop="52174"/>
              <exon start="52082" stop="51921"/>
              <exon start="51833" stop="51705"/>
              <exon start="51531" stop="51430"/>
              <exon start="51339" stop="51260"/>
              <exon start="50124" stop="50031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52287" stop="52174"/>
              <exon start="52082" stop="51921"/>
              <exon start="51833" stop="51705"/>
              <exon start="51531" stop="51430"/>
              <exon start="51339" stop="51326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51774" stop="51705"/>
              <exon start="51531" stop="51430"/>
              <exon start="51339" stop="51260"/>
              <exon start="50124" stop="49975"/>
              <exon start="49834" stop="49353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51774" stop="51705"/>
              <exon start="51531" stop="51430"/>
              <exon start="51339" stop="51260"/>
              <exon start="50124" stop="49975"/>
              <exon start="49834" stop="49600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51774" stop="51705"/>
              <exon start="51531" stop="51430"/>
              <exon start="51339" stop="51260"/>
              <exon start="50124" stop="49975"/>
              <exon start="49834" stop="49730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49797" stop="49093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49693" stop="48953"/>
              <exon start="47272" stop="47250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578374" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGACTGTGATGAATTTATTTCCACGAAGACCGAAGAGTTGCTTAATTTGATGATTGAAGCACTACCTGCATGTCATTTTCCAGCCAAGCGTCACAGACTTGACTGCCTATACTTTTTGATTGTCCATGTTACGAAG : GATGAATCAGAACAGAGGAGGCGTGACAGTATTACTTCTTTTATGACTGAAATTTTGCTTGCACTCAAAGAG : GCTAACAAGAAAACAAGGAACCGAGCGTACGAGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATG : ATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAGAGAGAACAAAGAAATAATTAAG : GCTAATTTAGGGCTGTTGAAGGTACTGGTCACAAAATCGACGGCCGATGGATTGCAAGCACATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAG : GTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAG : ATCAAAGAGCGAAGAGAGAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAGATCCCGTATGACAAAAGCAACGACATCAAG : GCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTTGATGATGGAGAATCTGAGAACAGTGATGCAGAATATATGGACACGAAAACTACTGCTGGTCGTAGGAGCAAGGCTACATTAGTATCAGACTCCAAAGCATCTTTATTACG : GTCCAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGCTCTTAGAGCATCTGGCAATCTCAAGAGGAAGTCTGAATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAGAAAGACAGACTTGAGCCGTATGCCTACTGGCCCCTTGACCGCAAGATGATGAGCCGGAGGCCTGAACATCGGGCAGCAGCACGAAAAGGAATGTCAAGCATTGTGAAGCTAACAAAGAAGCTTGAAGGCAAGAGTGCATCATCTGTGCTGTCCGTGAAGAGATCTAAGACTAAAAAGAAAAATAGATCATAAATAGAGGATGAAGTCGAAGTCTGATTTGATGATACTACGTCATGAGGGAGAGCTCTGTCCAGAGGCTTGGTAGTTTTTGTGCCATAGTTTGTAGTTGGGGATTCTGGATATCCAGTACACCCATGTTTTCTTTCGTGTCCTTTTTCATTTAATTCATCCATATATATCACCTTCAACAGGTGATTTGTTTTTTTTGATAGGGTTGTATGTAGGAAATAGAGTGTACGTATGCAAATGCATTCAATACAAGCTACTTGAATTGGTGAGTTATTGGTAATATATAACATTATTGCAATATGCAATGACTTAAAAGT : AGAAACAATGAAAAGAAAAACAA</gDNA_template>
            <first_frame> R  T  V  M  N  L  F  P  R  R  P  K  S  C  L  I  *  *  L  K  H  Y  L  H  V  I  F  Q  P  S  V  T  D  L  T  A  Y  T  F  *  L  S  M  L  R  R :   M  N  Q  N  R  G  G  V  T  V  L  L  L  L  *  L  K  F  C  L  H  S  K  R :   L  T  R  K  Q  G  T  E  R  T  R  F  L  S  R  L  A  M  L  V  Q  M  K  T  K  V  A  E  R  S  T  C  I  S  F  L  I  * :   L  L  G  V  L  P  G  K  H  L  I  *  S  V  Q  R  L  K  A  L  L  D  W  L  M  N  F  Q  T  L  F  L  L  L  T  V  S  Y  H  Q  H  F  F  S  L  K  E  R  T  K  K  *  L  R :   L  I  *  G  C  *  R  Y  W  S  Q  N  R  R  P  M  D  C  K  H  I  *  G  T  W  *  R  P  F  L  V  G  K  I  V  P  R  T  I  S  K  P  R :   L  N  C  L  L  K  C  L  S  R  S  V  D  W  M  L  *  K  R  *  C  L  K  S  T  *  N  S  L  L  T  *  E  R :   S  K  S  E  E  R  G  A  S  P  R  I  L  R  K  A  D  P  V  *  Q  K  Q  R  H  Q   : G  *  A  D  G  I  I  Q  K  Y  F  L  S  L  M  M  E  N  L  R  T  V  M  Q  N  I  W  T  R  K  L  L  L  V  V  G  A  R  L  H  *  Y  Q  T  P  K  H  L  Y  Y   : G  P  R  K  H  G  K  Q  P  R  V  C  R  K  I  C  L  I  N  *  M  M  S  H  L  T  Y  L  T  R  R  R  P  G  Q  L  L  E  H  L  A  I  S  R  G  S  L  N  Q  K  M  K  Q  K  *  I  L  K  A  V  *  L  F  T  M  E  I  R  S  K  K  E  L  S  Q  L  L  M  I  *  M  *  E  A  K  Q  G  V  A  F  Q  R  A  Q  G  R  L  R  N  G  G  E  H  L  N  Q  D  G  L  T  L  E  Q  S  M  R  A  R  R  Q  V  V  M  S  R  R  K  T  D  L  S  R  M  P  T  G  P  L  T  A  R  *  *  A  G  G  L  N  I  G  Q  Q  H  E  K  E  C  Q  A  L  *  S  *  Q  R  S  L  K  A  R  V  H  H  L  C  C  P  *  R  D  L  R  L  K  R  K  I  D  H  K  *  R  M  K  S  K  S  D  L  M  I  L  R  H  E  G  E  L  C  P  E  A  W  *  F  L  C  H  S  L  *  L  G  I  L  D  I  Q  Y  T  H  V  F  F  R  V  L  F  H  L  I  H  P  Y  I  S  P  S  T  G  D  L  F  F  L  I  G  L  Y  V  G  N  R  V  Y  V  C  K  C  I  Q  Y  K  L  L  E  L  V  S  Y  W  *  Y  I  T  L  L  Q  Y  A  M  T  *  K   : *  K  Q  *  K  E  K  Q </first_frame>
            <second_frame>  G  L  *  *  I  Y  F  H  E  D  R  R  V  A  *  F  D  D  *  S  T  T  C  M  S  F  S  S  Q  A  S  Q  T  *  L  P  I  L  F  D  C  P  C  Y  E   : G  *  I  R  T  E  E  A  *  Q  Y  Y  F  F  Y  D  *  N  F  A  C  T  Q  R   : G  *  Q  E  N  K  E  P  S  V  R  D  S  C  Q  D  W  P  C  L  C  R  *  R  Q  R  W  Q  K  G  A  P  A  S  V  F  *  Y   : D  C  W  G  S  C  R  G  N  T  S  Y  D  Q  C  S  G  *  R  P  C  S  T  G  L  *  I  F  R  P  C  F  C  C  L  Q  C  P  T  I  N  I  S  S  P  *  K  R  E  Q  R  N  N  *   : G  *  F  R  A  V  E  G  T  G  H  K  I  D  G  R  W  I  A  S  T  F  K  E  H  G  R  G  P  S  W  L  A  K  *  Y  Q  E  P  F  Q  S  Q   : G  *  T  A  Y  *  N  A  Y  Q  E  V  W  I  G  C  C  K  R  G  D  A  *  R  A  H  E  T  P  Y  *  H  K  K   : D  Q  R  A  K  R  E  E  P  R  L  E  F  *  G  K  Q  I  P  Y  D  K  S  N  D  I  K  :  A  K  Q  M  E  S  Y  K  N  I  F  *  V  *  *  W  R  I  *  E  Q  *  C  R  I  Y  G  H  E  N  Y  C  W  S  *  E  Q  G  Y  I  S  I  R  L  Q  S  I  F  I  T  :  V  Q  E  N  T  E  S  S  Q  E  F  A  G  R  S  V  *  S  I  R  *  *  A  T  *  L  T  *  P  E  E  D  Q  V  S  S  *  S  I  W  Q  S  Q  E  E  V  *  I  R  R  *  S  R  N  R  F  *  R  P  F  D  Y  S  R  W  R  *  E  A  K  K  S  *  A  S  F  *  *  F  R  C  K  K  Q  S  R  E  S  L  F  R  E  L  K  E  D  S  E  T  E  E  N  I  *  I  R  M  G  L  H  W  N  R  V  C  E  Q  E  G  R  W  *  C  Q  E  E  R  Q  T  *  A  V  C  L  L  A  P  *  P  Q  D  D  E  P  E  A  *  T  S  G  S  S  T  K  R  N  V  K  H  C  E  A  N  K  E  A  *  R  Q  E  C  I  I  C  A  V  R  E  E  I  *  D  *  K  E  K  *  I  I  N  R  G  *  S  R  S  L  I  *  *  Y  Y  V  M  R  E  S  S  V  Q  R  L  G  S  F  C  A  I  V  C  S  W  G  F  W  I  S  S  T  P  M  F  S  F  V  S  F  F  I  *  F  I  H  I  Y  H  L  Q  Q  V  I  C  F  F  *  *  G  C  M  *  E  I  E  C  T  Y  A  N  A  F  N  T  S  Y  L  N  W  *  V  I  G  N  I  *  H  Y  C  N  M  Q  *  L  K  S  :  R  N  N  E  K  K  N   </second_frame>
            <third_frame>   D  C  D  E  F  I  S  T  K  T  E  E  L  L  N  L  M  I  E  A  L  P  A  C  H  F  P  A  K  R  H  R  L  D  C  L  Y  F  L  I  V  H  V  T  K  :  D  E  S  E  Q  R  R  R  D  S  I  T  S  F  M  T  E  I  L  L  A  L  K  E  :  A  N  K  K  T  R  N  R  A  Y  E  I  L  V  K  I  G  H  A  C  A  D  E  D  K  G  G  R  K  E  H  L  H  Q  F  F  N  M  :  I  A  G  G  L  A  G  E  T  P  H  M  I  S  A  A  V  K  G  L  A  R  L  A  Y  E  F  S  D  L  V  S  A  A  Y  S  V  L  P  S  T  F  L  L  L  K  R  E  N  K  E  I  I  K  :  A  N  L  G  L  L  K  V  L  V  T  K  S  T  A  D  G  L  Q  A  H  L  R  N  M  V  E  A  L  L  G  W  Q  N  S  T  K  N  H  F  K  A  K  :  V  K  L  L  I  E  M  L  I  K  K  C  G  L  D  A  V  K  E  V  M  P  E  E  H  M  K  L  L  T  N  I  R  K  :  I  K  E  R  R  E  R  S  L  A  S  N  S  E  E  S  R  S  R  M  T  K  A  T  T  S  R :   L  S  R  W  N  H  T  K  I  F  S  E  F  D  D  G  E  S  E  N  S  D  A  E  Y  M  D  T  K  T  T  A  G  R  R  S  K  A  T  L  V  S  D  S  K  A  S  L  L  R :   S  K  K  T  R  K  A  A  K  S  L  Q  E  D  L  F  D  Q  L  D  D  E  P  L  D  L  L  D  Q  K  K  T  R  S  A  L  R  A  S  G  N  L  K  R  K  S  E  S  E  D  E  A  E  I  D  S  E  G  R  L  I  I  H  D  G  D  K  K  Q  K  R  V  K  P  A  S  D  D  L  D  V  R  S  K  A  G  S  R  F  S  E  S  S  R  K  T  Q  K  R  R  R  T  S  E  S  G  W  A  Y  T  G  T  E  Y  A  S  K  K  A  G  G  D  V  K  K  K  D  R  L  E  P  Y  A  Y  W  P  L  D  R  K  M  M  S  R  R  P  E  H  R  A  A  A  R  K  G  M  S  S  I  V  K  L  T  K  K  L  E  G  K  S  A  S  S  V  L  S  V  K  R  S  K  T  K  K  K  N  R  S  *  I  E  D  E  V  E  V  *  F  D  D  T  T  S  *  G  R  A  L  S  R  G  L  V  V  F  V  P  *  F  V  V  G  D  S  G  Y  P  V  H  P  C  F  L  S  C  P  F  S  F  N  S  S  I  Y  I  T  F  N  R  *  F  V  F  F  D  R  V  V  C  R  K  *  S  V  R  M  Q  M  H  S  I  Q  A  T  *  I  G  E  L  L  V  I  Y  N  I  I  A  I  C  N  D  L  K  V :   E  T  M  K  R  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53582" stop="53448"/>
                    <exon start="53346" stop="53275"/>
                    <exon start="52287" stop="52174"/>
                    <exon start="52082" stop="51921"/>
                    <exon start="51833" stop="51705"/>
                    <exon start="51531" stop="51430"/>
                    <exon start="51339" stop="51260"/>
                    <exon start="50124" stop="49975"/>
                    <exon start="49834" stop="49267"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1509</number_coding_nucleotides>
                  <number_encoded_amino_acids>503</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DCDEFISTKTEELLNLMIEALPACHFPAKRHRLDCLYFLIVHVTKDESEQRRRDSITSFMTEILLALKEANKKTRNRAYEILVKIGHACADEDKGGRKEHLHQFFNMIAGGLAGETPHMISAAVKGLARLAYEFSDLVSAAYSVLPSTFLLLKRENKEIIKANLGLLKVLVTKSTADGLQAHLRNMVEALLGWQNSTKNHFKAKVKLLIEMLIKKCGLDAVKEVMPEEHMKLLTNIRKIKERRERSLASNSEESRSRMTKATTSRLSRWNHTKIFSEFDDGESENSDAEYMDTKTTAGRRSKATLVSDSKASLLRSKKTRKAAKSLQEDLFDQLDDEPLDLLDQKKTRSALRASGNLKRKSESEDEAEIDSEGRLIIHDGDKKQKRVKPASDDLDVRSKAGSRFSESSRKTQKRRRTSESGWAYTGTEYASKKAGGDVKKKDRLEPYAYWPLDRKMMSRRPEHRAAARKGMSSIVKLTKKLEGKSASSVLSVKRSKTKKKNRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54427" e_stop="54310"/>
            <exon e_start="54212" e_stop="54119"/>
            <exon e_start="54040" e_stop="53984"/>
            <exon e_start="53582" e_stop="53448"/>
            <exon e_start="53346" e_stop="53275"/>
            <exon e_start="52287" e_stop="52174"/>
            <exon e_start="52082" e_stop="51921"/>
            <exon e_start="51833" e_stop="51705"/>
            <exon e_start="51531" e_stop="51430"/>
            <exon e_start="51339" e_stop="51260"/>
            <exon e_start="50124" e_stop="49975"/>
            <exon e_start="49834" e_stop="48953"/>
            <exon e_start="47272" e_stop="47250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.951" e_score="0.966"/>
          <exon-intron don_prob="0.928" acc_prob="0.305" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.976" e_score="0.992"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.700" e_score="0.997"/>
          <exon-only e_score="0.739"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="54427" e_stop="54310" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.951">
            <gDNA_intron_boundary i_start="54309" i_stop="54213" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54212" e_stop="54119" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.305">
            <gDNA_intron_boundary i_start="54118" i_stop="54041" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54040" e_stop="53984" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="53983" i_stop="53583" i_length="401"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53582" e_stop="53448" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53447" i_stop="53347" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53346" e_stop="53275" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.952">
            <gDNA_intron_boundary i_start="53274" i_stop="52288" i_length="987"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52287" e_stop="52174" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.935" acc_prob="0.973">
            <gDNA_intron_boundary i_start="52173" i_stop="52083" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52082" e_stop="51921" e_length="162"/>
          </exon>
          <intron i_serial="7" don_prob="0.821" acc_prob="0.982">
            <gDNA_intron_boundary i_start="51920" i_stop="51834" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="51833" e_stop="51705" e_length="129"/>
          </exon>
          <intron i_serial="8" don_prob="0.976" acc_prob="0.976">
            <gDNA_intron_boundary i_start="51704" i_stop="51532" i_length="173"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="51531" e_stop="51430" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51429" i_stop="51340" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="51339" e_stop="51260" e_length="80"/>
          </exon>
          <intron i_serial="10" don_prob="0.978" acc_prob="0.980">
            <gDNA_intron_boundary i_start="51259" i_stop="50125" i_length="1135"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="50124" e_stop="49975" e_length="150"/>
          </exon>
          <intron i_serial="11" don_prob="0.872" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49974" i_stop="49835" i_length="140"/>
          </intron>
          <exon e_serial="12" e_score="0.997">
            <gDNA_exon_boundary e_start="49834" e_stop="48953" e_length="882"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.700">
            <gDNA_intron_boundary i_start="48952" i_stop="47273" i_length="1680"/>
          </intron>
          <exon e_serial="13" e_score="0.739">
            <gDNA_exon_boundary e_start="47272" e_stop="47250" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54427" stop="54310"/>
              <exon start="54212" stop="54119"/>
              <exon start="54040" stop="53984"/>
              <exon start="53582" stop="53448"/>
              <exon start="53346" stop="53275"/>
              <exon start="52287" stop="52174"/>
              <exon start="52082" stop="51943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53535" stop="53448"/>
              <exon start="53346" stop="53275"/>
              <exon start="52287" stop="52174"/>
              <exon start="52082" stop="51921"/>
              <exon start="51833" stop="51705"/>
              <exon start="51531" stop="51482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53295" stop="53275"/>
              <exon start="52287" stop="52174"/>
              <exon start="52082" stop="51921"/>
              <exon start="51833" stop="51705"/>
              <exon start="51531" stop="51430"/>
              <exon start="51339" stop="51260"/>
              <exon start="50124" stop="50031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52287" stop="52174"/>
              <exon start="52082" stop="51921"/>
              <exon start="51833" stop="51705"/>
              <exon start="51531" stop="51430"/>
              <exon start="51339" stop="51326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51774" stop="51705"/>
              <exon start="51531" stop="51430"/>
              <exon start="51339" stop="51260"/>
              <exon start="50124" stop="49975"/>
              <exon start="49834" stop="49353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51774" stop="51705"/>
              <exon start="51531" stop="51430"/>
              <exon start="51339" stop="51260"/>
              <exon start="50124" stop="49975"/>
              <exon start="49834" stop="49600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51774" stop="51705"/>
              <exon start="51531" stop="51430"/>
              <exon start="51339" stop="51260"/>
              <exon start="50124" stop="49975"/>
              <exon start="49834" stop="49730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49797" stop="49093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49693" stop="48953"/>
              <exon start="47272" stop="47250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578374" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAAATCATGCAGAGGCTTTTGGAGGTGACCCAAGAAGCTGGGGAGGCAGGGAAGGACAAAAAATCGCATTCAATGCAGATTGATGACTCATCCAGTAAAAGTTCTTTGTCAGAGAG : GGCACAGTTATTTGATCTGGCAGTTTCATTCTTGCCTGGTTTAAACGCTCAAGAAATTGGTGTGCTGTTTGGTGCTTTAAAGCCTGCTTTAAAG : GATGAGGAAGGCTTGATCCAGAAGAAGGCATATAAAGTTCTCTCCATGATCCTTCAG : GACTGTGATGAATTTATTTCCACGAAGACCGAAGAGTTGCTTAATTTGATGATTGAAGCACTACCTGCATGTCATTTTCCAGCCAAGCGTCACAGACTTGACTGCCTATACTTTTTGATTGTCCATGTTACGAAG : GATGAATCAGAACAGAGGAGGCGTGACAGTATTACTTCTTTTATGACTGAAATTTTGCTTGCACTCAAAGAG : GCTAACAAGAAAACAAGGAACCGAGCGTACGAGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATG : ATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAGAGAGAACAAAGAAATAATTAAG : GCTAATTTAGGGCTGTTGAAGGTACTGGTCACAAAATCGACGGCCGATGGATTGCAAGCACATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAG : GTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAG : ATCAAAGAGCGAAGAGAGAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAGATCCCGTATGACAAAAGCAACGACATCAAG : GCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTTGATGATGGAGAATCTGAGAACAGTGATGCAGAATATATGGACACGAAAACTACTGCTGGTCGTAGGAGCAAGGCTACATTAGTATCAGACTCCAAAGCATCTTTATTACG : GTCCAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGCTCTTAGAGCATCTGGCAATCTCAAGAGGAAGTCTGAATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAGAAAGACAGACTTGAGCCGTATGCCTACTGGCCCCTTGACCGCAAGATGATGAGCCGGAGGCCTGAACATCGGGCAGCAGCACGAAAAGGAATGTCAAGCATTGTGAAGCTAACAAAGAAGCTTGAAGGCAAGAGTGCATCATCTGTGCTGTCCGTGAAGAGATCTAAGACTAAAAAGAAAAATAGATCATAAATAGAGGATGAAGTCGAAGTCTGATTTGATGATACTACGTCATGAGGGAGAGCTCTGTCCAGAGGCTTGGTAGTTTTTGTGCCATAGTTTGTAGTTGGGGATTCTGGATATCCAGTACACCCATGTTTTCTTTCGTGTCCTTTTTCATTTAATTCATCCATATATATCACCTTCAACAGGTGATTTGTTTTTTTTGATAGGGTTGTATGTAGGAAATAGAGTGTACGTATGCAAATGCATTCAATACAAGCTACTTGAATTGGTGAGTTATTGGTAATATATAACATTATTGCAATATGCAATGACTTAAAAGT : AGAAACAATGAAAAGAAAAACAA</gDNA_template>
            <first_frame> R  K  S  C  R  G  F  W  R  *  P  K  K  L  G  R  Q  G  R  T  K  N  R  I  Q  C  R  L  M  T  H  P  V  K  V  L  C  Q  R   : G  H  S  Y  L  I  W  Q  F  H  S  C  L  V  *  T  L  K  K  L  V  C  C  L  V  L  *  S  L  L  *  R :   M  R  K  A  *  S  R  R  R  H  I  K  F  S  P  *  S  F  R :   T  V  M  N  L  F  P  R  R  P  K  S  C  L  I  *  *  L  K  H  Y  L  H  V  I  F  Q  P  S  V  T  D  L  T  A  Y  T  F  *  L  S  M  L  R  R :   M  N  Q  N  R  G  G  V  T  V  L  L  L  L  *  L  K  F  C  L  H  S  K  R :   L  T  R  K  Q  G  T  E  R  T  R  F  L  S  R  L  A  M  L  V  Q  M  K  T  K  V  A  E  R  S  T  C  I  S  F  L  I  * :   L  L  G  V  L  P  G  K  H  L  I  *  S  V  Q  R  L  K  A  L  L  D  W  L  M  N  F  Q  T  L  F  L  L  L  T  V  S  Y  H  Q  H  F  F  S  L  K  E  R  T  K  K  *  L  R :   L  I  *  G  C  *  R  Y  W  S  Q  N  R  R  P  M  D  C  K  H  I  *  G  T  W  *  R  P  F  L  V  G  K  I  V  P  R  T  I  S  K  P  R :   L  N  C  L  L  K  C  L  S  R  S  V  D  W  M  L  *  K  R  *  C  L  K  S  T  *  N  S  L  L  T  *  E  R :   S  K  S  E  E  R  G  A  S  P  R  I  L  R  K  A  D  P  V  *  Q  K  Q  R  H  Q   : G  *  A  D  G  I  I  Q  K  Y  F  L  S  L  M  M  E  N  L  R  T  V  M  Q  N  I  W  T  R  K  L  L  L  V  V  G  A  R  L  H  *  Y  Q  T  P  K  H  L  Y  Y   : G  P  R  K  H  G  K  Q  P  R  V  C  R  K  I  C  L  I  N  *  M  M  S  H  L  T  Y  L  T  R  R  R  P  G  Q  L  L  E  H  L  A  I  S  R  G  S  L  N  Q  K  M  K  Q  K  *  I  L  K  A  V  *  L  F  T  M  E  I  R  S  K  K  E  L  S  Q  L  L  M  I  *  M  *  E  A  K  Q  G  V  A  F  Q  R  A  Q  G  R  L  R  N  G  G  E  H  L  N  Q  D  G  L  T  L  E  Q  S  M  R  A  R  R  Q  V  V  M  S  R  R  K  T  D  L  S  R  M  P  T  G  P  L  T  A  R  *  *  A  G  G  L  N  I  G  Q  Q  H  E  K  E  C  Q  A  L  *  S  *  Q  R  S  L  K  A  R  V  H  H  L  C  C  P  *  R  D  L  R  L  K  R  K  I  D  H  K  *  R  M  K  S  K  S  D  L  M  I  L  R  H  E  G  E  L  C  P  E  A  W  *  F  L  C  H  S  L  *  L  G  I  L  D  I  Q  Y  T  H  V  F  F  R  V  L  F  H  L  I  H  P  Y  I  S  P  S  T  G  D  L  F  F  L  I  G  L  Y  V  G  N  R  V  Y  V  C  K  C  I  Q  Y  K  L  L  E  L  V  S  Y  W  *  Y  I  T  L  L  Q  Y  A  M  T  *  K   : *  K  Q  *  K  E  K  Q </first_frame>
            <second_frame>  E  N  H  A  E  A  F  G  G  D  P  R  S  W  G  G  R  E  G  Q  K  I  A  F  N  A  D  *  *  L  I  Q  *  K  F  F  V  R  E  :  G  T  V  I  *  S  G  S  F  I  L  A  W  F  K  R  S  R  N  W  C  A  V  W  C  F  K  A  C  F  K   : G  *  G  R  L  D  P  E  E  G  I  *  S  S  L  H  D  P  S   : G  L  *  *  I  Y  F  H  E  D  R  R  V  A  *  F  D  D  *  S  T  T  C  M  S  F  S  S  Q  A  S  Q  T  *  L  P  I  L  F  D  C  P  C  Y  E   : G  *  I  R  T  E  E  A  *  Q  Y  Y  F  F  Y  D  *  N  F  A  C  T  Q  R   : G  *  Q  E  N  K  E  P  S  V  R  D  S  C  Q  D  W  P  C  L  C  R  *  R  Q  R  W  Q  K  G  A  P  A  S  V  F  *  Y   : D  C  W  G  S  C  R  G  N  T  S  Y  D  Q  C  S  G  *  R  P  C  S  T  G  L  *  I  F  R  P  C  F  C  C  L  Q  C  P  T  I  N  I  S  S  P  *  K  R  E  Q  R  N  N  *   : G  *  F  R  A  V  E  G  T  G  H  K  I  D  G  R  W  I  A  S  T  F  K  E  H  G  R  G  P  S  W  L  A  K  *  Y  Q  E  P  F  Q  S  Q   : G  *  T  A  Y  *  N  A  Y  Q  E  V  W  I  G  C  C  K  R  G  D  A  *  R  A  H  E  T  P  Y  *  H  K  K   : D  Q  R  A  K  R  E  E  P  R  L  E  F  *  G  K  Q  I  P  Y  D  K  S  N  D  I  K  :  A  K  Q  M  E  S  Y  K  N  I  F  *  V  *  *  W  R  I  *  E  Q  *  C  R  I  Y  G  H  E  N  Y  C  W  S  *  E  Q  G  Y  I  S  I  R  L  Q  S  I  F  I  T  :  V  Q  E  N  T  E  S  S  Q  E  F  A  G  R  S  V  *  S  I  R  *  *  A  T  *  L  T  *  P  E  E  D  Q  V  S  S  *  S  I  W  Q  S  Q  E  E  V  *  I  R  R  *  S  R  N  R  F  *  R  P  F  D  Y  S  R  W  R  *  E  A  K  K  S  *  A  S  F  *  *  F  R  C  K  K  Q  S  R  E  S  L  F  R  E  L  K  E  D  S  E  T  E  E  N  I  *  I  R  M  G  L  H  W  N  R  V  C  E  Q  E  G  R  W  *  C  Q  E  E  R  Q  T  *  A  V  C  L  L  A  P  *  P  Q  D  D  E  P  E  A  *  T  S  G  S  S  T  K  R  N  V  K  H  C  E  A  N  K  E  A  *  R  Q  E  C  I  I  C  A  V  R  E  E  I  *  D  *  K  E  K  *  I  I  N  R  G  *  S  R  S  L  I  *  *  Y  Y  V  M  R  E  S  S  V  Q  R  L  G  S  F  C  A  I  V  C  S  W  G  F  W  I  S  S  T  P  M  F  S  F  V  S  F  F  I  *  F  I  H  I  Y  H  L  Q  Q  V  I  C  F  F  *  *  G  C  M  *  E  I  E  C  T  Y  A  N  A  F  N  T  S  Y  L  N  W  *  V  I  G  N  I  *  H  Y  C  N  M  Q  *  L  K  S  :  R  N  N  E  K  K  N   </second_frame>
            <third_frame>   K  I  M  Q  R  L  L  E  V  T  Q  E  A  G  E  A  G  K  D  K  K  S  H  S  M  Q  I  D  D  S  S  S  K  S  S  L  S  E  R :   A  Q  L  F  D  L  A  V  S  F  L  P  G  L  N  A  Q  E  I  G  V  L  F  G  A  L  K  P  A  L  K  :  D  E  E  G  L  I  Q  K  K  A  Y  K  V  L  S  M  I  L  Q  :  D  C  D  E  F  I  S  T  K  T  E  E  L  L  N  L  M  I  E  A  L  P  A  C  H  F  P  A  K  R  H  R  L  D  C  L  Y  F  L  I  V  H  V  T  K  :  D  E  S  E  Q  R  R  R  D  S  I  T  S  F  M  T  E  I  L  L  A  L  K  E  :  A  N  K  K  T  R  N  R  A  Y  E  I  L  V  K  I  G  H  A  C  A  D  E  D  K  G  G  R  K  E  H  L  H  Q  F  F  N  M  :  I  A  G  G  L  A  G  E  T  P  H  M  I  S  A  A  V  K  G  L  A  R  L  A  Y  E  F  S  D  L  V  S  A  A  Y  S  V  L  P  S  T  F  L  L  L  K  R  E  N  K  E  I  I  K  :  A  N  L  G  L  L  K  V  L  V  T  K  S  T  A  D  G  L  Q  A  H  L  R  N  M  V  E  A  L  L  G  W  Q  N  S  T  K  N  H  F  K  A  K  :  V  K  L  L  I  E  M  L  I  K  K  C  G  L  D  A  V  K  E  V  M  P  E  E  H  M  K  L  L  T  N  I  R  K  :  I  K  E  R  R  E  R  S  L  A  S  N  S  E  E  S  R  S  R  M  T  K  A  T  T  S  R :   L  S  R  W  N  H  T  K  I  F  S  E  F  D  D  G  E  S  E  N  S  D  A  E  Y  M  D  T  K  T  T  A  G  R  R  S  K  A  T  L  V  S  D  S  K  A  S  L  L  R :   S  K  K  T  R  K  A  A  K  S  L  Q  E  D  L  F  D  Q  L  D  D  E  P  L  D  L  L  D  Q  K  K  T  R  S  A  L  R  A  S  G  N  L  K  R  K  S  E  S  E  D  E  A  E  I  D  S  E  G  R  L  I  I  H  D  G  D  K  K  Q  K  R  V  K  P  A  S  D  D  L  D  V  R  S  K  A  G  S  R  F  S  E  S  S  R  K  T  Q  K  R  R  R  T  S  E  S  G  W  A  Y  T  G  T  E  Y  A  S  K  K  A  G  G  D  V  K  K  K  D  R  L  E  P  Y  A  Y  W  P  L  D  R  K  M  M  S  R  R  P  E  H  R  A  A  A  R  K  G  M  S  S  I  V  K  L  T  K  K  L  E  G  K  S  A  S  S  V  L  S  V  K  R  S  K  T  K  K  K  N  R  S  *  I  E  D  E  V  E  V  *  F  D  D  T  T  S  *  G  R  A  L  S  R  G  L  V  V  F  V  P  *  F  V  V  G  D  S  G  Y  P  V  H  P  C  F  L  S  C  P  F  S  F  N  S  S  I  Y  I  T  F  N  R  *  F  V  F  F  D  R  V  V  C  R  K  *  S  V  R  M  Q  M  H  S  I  Q  A  T  *  I  G  E  L  L  V  I  Y  N  I  I  A  I  C  N  D  L  K  V :   E  T  M  K  R  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54425" stop="54310"/>
                    <exon start="54212" stop="54119"/>
                    <exon start="54040" stop="53984"/>
                    <exon start="53582" stop="53448"/>
                    <exon start="53346" stop="53275"/>
                    <exon start="52287" stop="52174"/>
                    <exon start="52082" stop="51921"/>
                    <exon start="51833" stop="51705"/>
                    <exon start="51531" stop="51430"/>
                    <exon start="51339" stop="51260"/>
                    <exon start="50124" stop="49975"/>
                    <exon start="49834" stop="49267"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1776</number_coding_nucleotides>
                  <number_encoded_amino_acids>592</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIMQRLLEVTQEAGEAGKDKKSHSMQIDDSSSKSSLSERAQLFDLAVSFLPGLNAQEIGVLFGALKPALKDEEGLIQKKAYKVLSMILQDCDEFISTKTEELLNLMIEALPACHFPAKRHRLDCLYFLIVHVTKDESEQRRRDSITSFMTEILLALKEANKKTRNRAYEILVKIGHACADEDKGGRKEHLHQFFNMIAGGLAGETPHMISAAVKGLARLAYEFSDLVSAAYSVLPSTFLLLKRENKEIIKANLGLLKVLVTKSTADGLQAHLRNMVEALLGWQNSTKNHFKAKVKLLIEMLIKKCGLDAVKEVMPEEHMKLLTNIRKIKERRERSLASNSEESRSRMTKATTSRLSRWNHTKIFSEFDDGESENSDAEYMDTKTTAGRRSKATLVSDSKASLLRSKKTRKAAKSLQEDLFDQLDDEPLDLLDQKKTRSALRASGNLKRKSESEDEAEIDSEGRLIIHDGDKKQKRVKPASDDLDVRSKAGSRFSESSRKTQKRRRTSESGWAYTGTEYASKKAGGDVKKKDRLEPYAYWPLDRKMMSRRPEHRAAARKGMSSIVKLTKKLEGKSASSVLSVKRSKTKKKNRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="60752" PGL_stop="55764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60752" e_stop="60511"/>
            <exon e_start="60166" e_stop="60075"/>
            <exon e_start="56330" e_stop="56121"/>
            <exon e_start="56021" e_stop="55764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.878" acc_prob="0.796" e_score="0.988"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.347" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="60752" e_stop="60511" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.878" acc_prob="0.796">
            <gDNA_intron_boundary i_start="60510" i_stop="60167" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60166" e_stop="60075" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60074" i_stop="56331" i_length="3744"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56330" e_stop="56121" e_length="210"/>
          </exon>
          <intron i_serial="3" don_prob="0.347" acc_prob="0.989">
            <gDNA_intron_boundary i_start="56120" i_stop="56022" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56021" e_stop="55764" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60752" stop="60511"/>
              <exon start="60166" stop="60075"/>
              <exon start="56330" stop="56121"/>
              <exon start="56021" stop="55764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56157" stop="56121"/>
              <exon start="56021" stop="55788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATGAGGAAGCTATAAGGGTTGCGCTGGAGGCACTCAAGATTTTAATACATGAATGCATTGATGAAAACTTGATCAAACAGGGTGTGGATAACATAATTAGTTCGAATACTGATGCGAAAAAATCTGGACCAACTATCATTGAGAAAATCTGTGCCACAATTGAGAGCTTGCTTACCTATCACTATGCAGCAGTTTGGGACATGTCATTTCAAGTGGTGGTTGCCATGTTTGATAAGCTAG : GTTGCTATTCTTCTCACCTTCTGAAGGGAACACTACAGAGTTTGGCTGATATGGAAAAGTTGCCAGATGAAGACTTCCCTTTCCGTAGACAG : CTGCACGAATGTGTTGGATCAGCTGTTGGTGCAATGGGACCTGAATCTTTTCTTACTCTTCTTCCTCTTAAACTGGATGTACAAGATCTGTCAGAGTCCAACATCTGGCTTTTCCCAATTCTAAAGCAAAATATTGTTGGTGCGCATTTAAGTTTCTTTACCAACTCAATTTTGCCAATGGTTGGAGCTATGAAGCAGAGGTCTGCAATG : CTTGAGCGCGAGGGAAAGATATATTCAGCAAGAACTATTGATGGAATTGTGTACTCATTGTGGTCACTGTTACCCTCATTTTGCAATTACCCTGTCGACACTGCTGAAAGCTTCAAGGATCTGGAGAAGGTATTCCGCAAAGCTCTACATGAAGAGCCTGATGTTTGTGGGATAATATGCTCCAGTTTGCAGATCCTCGTTCAGCAGAATGATAGCATTTTAAAAGGGACAGTTGATCTGTCTGATACTGAAACAAAC</gDNA_template>
            <first_frame> T  *  G  S  Y  K  G  C  A  G  G  T  Q  D  F  N  T  *  M  H  *  *  K  L  D  Q  T  G  C  G  *  H  N  *  F  E  Y  *  C  E  K  I  W  T  N  Y  H  *  E  N  L  C  H  N  *  E  L  A  Y  L  S  L  C  S  S  L  G  H  V  I  S  S  G  G  C  H  V  *  *  A  R :   L  L  F  F  S  P  S  E  G  N  T  T  E  F  G  *  Y  G  K  V  A  R  *  R  L  P  F  P  *  T   : A  A  R  M  C  W  I  S  C  W  C  N  G  T  *  I  F  S  Y  S  S  S  S  *  T  G  C  T  R  S  V  R  V  Q  H  L  A  F  P  N  S  K  A  K  Y  C  W  C  A  F  K  F  L  Y  Q  L  N  F  A  N  G  W  S  Y  E  A  E  V  C  N   : A  *  A  R  G  K  D  I  F  S  K  N  Y  *  W  N  C  V  L  I  V  V  T  V  T  L  I  L  Q  L  P  C  R  H  C  *  K  L  Q  G  S  G  E  G  I  P  Q  S  S  T  *  R  A  *  C  L  W  D  N  M  L  Q  F  A  D  P  R  S  A  E  *  *  H  F  K  R  D  S  *  S  V  *  Y  *  N  K  </first_frame>
            <second_frame>  H  E  E  A  I  R  V  A  L  E  A  L  K  I  L  I  H  E  C  I  D  E  N  L  I  K  Q  G  V  D  N  I  I  S  S  N  T  D  A  K  K  S  G  P  T  I  I  E  K  I  C  A  T  I  E  S  L  L  T  Y  H  Y  A  A  V  W  D  M  S  F  Q  V  V  V  A  M  F  D  K  L   : G  C  Y  S  S  H  L  L  K  G  T  L  Q  S  L  A  D  M  E  K  L  P  D  E  D  F  P  F  R  R  Q  :  L  H  E  C  V  G  S  A  V  G  A  M  G  P  E  S  F  L  T  L  L  P  L  K  L  D  V  Q  D  L  S  E  S  N  I  W  L  F  P  I  L  K  Q  N  I  V  G  A  H  L  S  F  F  T  N  S  I  L  P  M  V  G  A  M  K  Q  R  S  A  M  :  L  E  R  E  G  K  I  Y  S  A  R  T  I  D  G  I  V  Y  S  L  W  S  L  L  P  S  F  C  N  Y  P  V  D  T  A  E  S  F  K  D  L  E  K  V  F  R  K  A  L  H  E  E  P  D  V  C  G  I  I  C  S  S  L  Q  I  L  V  Q  Q  N  D  S  I  L  K  G  T  V  D  L  S  D  T  E  T  N </second_frame>
            <third_frame>   M  R  K  L  *  G  L  R  W  R  H  S  R  F  *  Y  M  N  A  L  M  K  T  *  S  N  R  V  W  I  T  *  L  V  R  I  L  M  R  K  N  L  D  Q  L  S  L  R  K  S  V  P  Q  L  R  A  C  L  P  I  T  M  Q  Q  F  G  T  C  H  F  K  W  W  L  P  C  L  I  S  *  :  V  A  I  L  L  T  F  *  R  E  H  Y  R  V  W  L  I  W  K  S  C  Q  M  K  T  S  L  S  V  D  S :   C  T  N  V  L  D  Q  L  L  V  Q  W  D  L  N  L  F  L  L  F  F  L  L  N  W  M  Y  K  I  C  Q  S  P  T  S  G  F  S  Q  F  *  S  K  I  L  L  V  R  I  *  V  S  L  P  T  Q  F  C  Q  W  L  E  L  *  S  R  G  L  Q  C :   L  S  A  R  E  R  Y  I  Q  Q  E  L  L  M  E  L  C  T  H  C  G  H  C  Y  P  H  F  A  I  T  L  S  T  L  L  K  A  S  R  I  W  R  R  Y  S  A  K  L  Y  M  K  S  L  M  F  V  G  *  Y  A  P  V  C  R  S  S  F  S  R  M  I  A  F  *  K  G  Q  L  I  C  L  I  L  K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60751" stop="60511"/>
                    <exon start="60166" stop="60075"/>
                    <exon start="56330" stop="56121"/>
                    <exon start="56021" stop="55764"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEEAIRVALEALKILIHECIDENLIKQGVDNIISSNTDAKKSGPTIIEKICATIESLLTYHYAAVWDMSFQVVVAMFDKLGCYSSHLLKGTLQSLADMEKLPDEDFPFRRQLHECVGSAVGAMGPESFLTLLPLKLDVQDLSESNIWLFPILKQNIVGAHLSFFTNSILPMVGAMKQRSAMLEREGKIYSARTIDGIVYSLWSLLPSFCNYPVDTAESFKDLEKVFRKALHEEPDVCGIICSSLQILVQQNDSILKGTVDLSDTETN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="69185" PGL_stop="68335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69185" e_stop="68335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="69185" e_stop="68335" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69181" stop="68457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69162" stop="68815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69066" stop="68363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68826" stop="68363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68826" stop="68363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68825" stop="68363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAATTAAATAAATCACAGCTAATCCTTGCCCCCCTCTCTCTTTTTTTTGTCTCCCACATAAATCATAATACAATACAATACTTTGCTTCCTACCAACACATACATTCACAAAAATGATGAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAGAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTATAAGGTAAGAATTATCTAAATTCCAATTTGGC</gDNA_template>
            <first_frame> A  I  K  *  I  T  A  N  P  C  P  P  L  S  F  F  C  L  P  H  K  S  *  Y  N  T  I  L  C  F  L  P  T  H  T  F  T  K  M  M  K  T  L  L  V  S  L  F  L  I  S  S  V  T  T  S  S  S  S  S  A  S  D  I  V  R  S  S  C  V  H  A  S  Y  P  T  I  C  V  R  T  L  S  S  Y  S  D  T  P  I  N  T  P  Q  D  L  A  Q  A  A  V  K  I  T  L  S  R  A  G  K  A  S  G  F  L  S  R  V  K  V  E  S  K  R  E  K  G  A  L  S  D  C  I  E  Q  M  G  D  S  M  E  E  L  R  K  S  L  S  E  L  K  H  V  R  R  G  N  A  F  K  W  Q  M  S  N  L  E  T  W  V  S  A  A  L  T  N  E  D  T  C  L  D  G  F  K  E  I  D  G  K  I  R  S  D  V  K  R  K  I  T  N  V  A  R  V  T  S  N  A  L  Y  L  I  N  R  L  D  D  S  A  N  K  I  T  H  P  *  S  L  I  R  L  I  N  I  T  G  R  N  N  S  E  S  L  M  H  L  V  V  L  S  S  F  S  A  V  T  M  H  F  I  G  *  K  P  V  L  L  M  V  Q  Y  L  *  G  K  N  Y  L  N  S  N  L   </first_frame>
            <second_frame>  Q  L  N  K  S  Q  L  I  L  A  P  L  S  L  F  F  V  S  H  I  N  H  N  T  I  Q  Y  F  A  S  Y  Q  H  I  H  S  Q  K  *  *  K  L  Y  L  F  L  C  F  *  F  H  Q  *  L  H  H  H  L  L  L  L  V  T  L  S  A  L  P  A  C  T  P  A  I  P  Q  F  A  S  E  H  S  L  H  T  R  T  H  P  L  T  P  R  R  I  *  L  K  P  R  *  K  L  P  F  L  E  Q  V  K  R  L  G  S  C  L  G  *  K  W  K  A  K  E  R  K  G  H  *  V  I  V  S  N  R  W  V  T  R  W  R  S  *  G  R  V  C  Q  S  L  N  M  Y  A  G  E  M  H  L  S  G  K  *  A  I  W  R  R  G  *  V  L  L  *  Q  M  K  I  H  V  L  M  D  S  R  K  L  M  A  K  S  G  L  M  *  N  E  R  L  R  M  L  L  E  L  L  V  M  H  F  T  L  S  I  D  W  M  I  L  Q  T  K  L  L  I  L  D  H  *  F  G  *  L  T  L  P  G  E  I  I  A  R  A  *  C  I  W  L  F  F  L  L  F  L  R  *  L  C  I  L  L  V  R  N  Q  Y  Y  *  W  C  N  I  Y  K  V  R  I  I  *  I  P  I  W  </second_frame>
            <third_frame>   N  *  I  N  H  S  *  S  L  P  P  S  L  F  F  L  S  P  T  *  I  I  I  Q  Y  N  T  L  L  P  T  N  T  Y  I  H  K  N  D  E  N  S  T  C  F  S  V  S  N  F  I  S  D  Y  I  I  I  F  F  C  *  *  H  C  P  L  F  L  R  A  R  Q  L  S  H  N  L  R  Q  N  T  L  F  I  L  G  H  T  H  *  H  P  A  G  F  S  S  S  R  G  E  N  Y  P  F  S  S  R  *  S  V  W  V  P  V  S  G  E  S  G  K  Q  K  R  E  R  G  I  E  *  L  Y  R  T  D  G  *  L  D  G  G  A  E  E  E  F  V  R  A  *  T  C  T  Q  G  K  C  I  *  V  A  N  E  Q  F  G  D  V  G  K  C  C  F  D  K  *  R  Y  M  S  *  W  I  Q  G  N  *  W  Q  N  Q  V  *  C  E  T  K  D  Y  E  C  C  *  S  Y  *  *  C  T  L  P  Y  Q  S  T  G  *  F  C  K  Q  N  Y  S  S  L  I  I  N  S  V  N  *  H  Y  R  E  K  *  *  R  E  L  N  A  F  G  C  S  F  F  F  F  C  G  N  Y  A  F  Y  W  L  E  T  S  I  I  N  G  A  I  F  I  R  *  E  L  S  K  F  Q  F  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69116" stop="68505"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNTILCFLPTHTFTKMMKTLLVSLFLISSVTTSSSSSASDIVRSSCVHASYPTICVRTLSSYSDTPINTPQDLAQAAVKITLSRAGKASGFLSRVKVESKREKGALSDCIEQMGDSMEELRKSLSELKHVRRGNAFKWQMSNLETWVSAALTNEDTCLDGFKEIDGKIRSDVKRKITNVARVTSNALYLINRLDDSANKITHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="90758" PGL_stop="89993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90758" e_stop="89993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="90758" e_stop="89993" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90758" stop="90196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90740" stop="90004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90735" stop="89993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90735" stop="90024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90734" stop="90203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90734" stop="90450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTAGAGGTTTTAACTAATATGAATTTATTTATTTTTTCAAATTGAGGAAATTTTTGCTTTATTATTATGTTATACTTTGTATTTTTATATTTCGCTGATTATTTGTATATTGTATTTATTCATTATTTATCCTGTTGTGGGTATATTATCATTGCATTCATGGCATAATATTTTCCGTCAAACGACAATTATTTCATTTCCACTAAAGGACGATTATGTGGGTTCGCAGTCGTTCATTAACCAAAGATTTTCTCGGGGCACCCTGACGAGTGTAGTTGGCTACTTGATAGTCAACGATCGTTAACTGTCTCAGCTCAAGTAGTCCGCTTGGGTTAACTTTTCCACTATAAATACAACTCACTCCTTGTAAACTAGTGTAGAGTCGAGCAAAATCCCAAAAAATAGCGCATTTGAACTAAGATGACCCAATACCCAAGGCGTGTTAGGTCCATTAGAAGACCACCTTGAGTCCAAAACGGCCCACGGCTTAAATGGACGTTCATACTTGTGTGTTTAAATTTGAAGGATGTATATGTTGTTTGAGAAAATCATTGTCTCATAGGATAAATATTAGATTATAGTTTGTTTAGGTTAAAGAAAGAGCTTCATCAGCTGCAAGCCTATTCGAAGATCTTAGCACCCGGATATGACAACAAATCAAGAAAGCAGAAGGATATTTCGCGGAGGCATAGTTTAGGGTCGTACCCATGTGTGAGACATATTATTTTGTATACATTTCCCCTATTATGTATCCCCATTAAGT</gDNA_template>
            <first_frame> V  L  E  V  L  T  N  M  N  L  F  I  F  S  N  *  G  N  F  C  F  I  I  M  L  Y  F  V  F  L  Y  F  A  D  Y  L  Y  I  V  F  I  H  Y  L  S  C  C  G  Y  I  I  I  A  F  M  A  *  Y  F  P  S  N  D  N  Y  F  I  S  T  K  G  R  L  C  G  F  A  V  V  H  *  P  K  I  F  S  G  H  P  D  E  C  S  W  L  L  D  S  Q  R  S  L  T  V  S  A  Q  V  V  R  L  G  *  L  F  H  Y  K  Y  N  S  L  L  V  N  *  C  R  V  E  Q  N  P  K  K  *  R  I  *  T  K  M  T  Q  Y  P  R  R  V  R  S  I  R  R  P  P  *  V  Q  N  G  P  R  L  K  W  T  F  I  L  V  C  L  N  L  K  D  V  Y  V  V  *  E  N  H  C  L  I  G  *  I  L  D  Y  S  L  F  R  L  K  K  E  L  H  Q  L  Q  A  Y  S  K  I  L  A  P  G  Y  D  N  K  S  R  K  Q  K  D  I  S  R  R  H  S  L  G  S  Y  P  C  V  R  H  I  I  L  Y  T  F  P  L  L  C  I  P  I  K  </first_frame>
            <second_frame>  F  *  R  F  *  L  I  *  I  Y  L  F  F  Q  I  E  E  I  F  A  L  L  L  C  Y  T  L  Y  F  Y  I  S  L  I  I  C  I  L  Y  L  F  I  I  Y  P  V  V  G  I  L  S  L  H  S  W  H  N  I  F  R  Q  T  T  I  I  S  F  P  L  K  D  D  Y  V  G  S  Q  S  F  I  N  Q  R  F  S  R  G  T  L  T  S  V  V  G  Y  L  I  V  N  D  R  *  L  S  Q  L  K  *  S  A  W  V  N  F  S  T  I  N  T  T  H  S  L  *  T  S  V  E  S  S  K  I  P  K  N  S  A  F  E  L  R  *  P  N  T  Q  G  V  L  G  P  L  E  D  H  L  E  S  K  T  A  H  G  L  N  G  R  S  Y  L  C  V  *  I  *  R  M  Y  M  L  F  E  K  I  I  V  S  *  D  K  Y  *  I  I  V  C  L  G  *  R  K  S  F  I  S  C  K  P  I  R  R  S  *  H  P  D  M  T  T  N  Q  E  S  R  R  I  F  R  G  G  I  V  *  G  R  T  H  V  *  D  I  L  F  C  I  H  F  P  Y  Y  V  S  P  L  S </second_frame>
            <third_frame>   F  R  G  F  N  *  Y  E  F  I  Y  F  F  K  L  R  K  F  L  L  Y  Y  Y  V  I  L  C  I  F  I  F  R  *  L  F  V  Y  C  I  Y  S  L  F  I  L  L  W  V  Y  Y  H  C  I  H  G  I  I  F  S  V  K  R  Q  L  F  H  F  H  *  R  T  I  M  W  V  R  S  R  S  L  T  K  D  F  L  G  A  P  *  R  V  *  L  A  T  *  *  S  T  I  V  N  C  L  S  S  S  S  P  L  G  L  T  F  P  L  *  I  Q  L  T  P  C  K  L  V  *  S  R  A  K  S  Q  K  I  A  H  L  N  *  D  D  P  I  P  K  A  C  *  V  H  *  K  T  T  L  S  P  K  R  P  T  A  *  M  D  V  H  T  C  V  F  K  F  E  G  C  I  C  C  L  R  K  S  L  S  H  R  I  N  I  R  L  *  F  V  *  V  K  E  R  A  S  S  A  A  S  L  F  E  D  L  S  T  R  I  *  Q  Q  I  K  K  A  E  G  Y  F  A  E  A  *  F  R  V  V  P  M  C  E  T  Y  Y  F  V  Y  I  S  P  I  M  Y  P  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90733" stop="90452"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLFFQIEEIFALLLCYTLYFYISLIICILYLFIIYPVVGILSLHSWHNIFRQTTIISFPLKDDYVGSQSFINQRFSRGTLTSVVGYLIVNDR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90188" stop="89994"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILDYSLFRLKKELHQLQAYSKILAPGYDNKSRKQKDISRRHSLGSYPCVRHIILYTFPLLCIPIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="95988" PGL_stop="96205"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95988" e_stop="96205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="95988" e_stop="96205" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95988" stop="96205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCTCGCTCTGCTTCTTGCCCAATTCCTCAAGATAATCTGTCAGCCATATCATCTCTTTCCCAACTTCAGCTATTGCCACATACTCAGCTTCAGTAGATGAAAGAGAAACACACTTCTGAAGCCTGGACATCCAACTCACTGTTGTTCCACCTATGGTGTAAATGTACCCGGATGTACTCTTGCTCGATTCAACATCCCCACCAAGATCAGCATCC</gDNA_template>
            <first_frame> S  S  R  S  A  S  C  P  I  P  Q  D  N  L  S  A  I  S  S  L  S  Q  L  Q  L  L  P  H  T  Q  L  Q  *  M  K  E  K  H  T  S  E  A  W  T  S  N  S  L  L  F  H  L  W  C  K  C  T  R  M  Y  S  C  S  I  Q  H  P  H  Q  D  Q  H   </first_frame>
            <second_frame>  L  L  A  L  L  L  A  Q  F  L  K  I  I  C  Q  P  Y  H  L  F  P  N  F  S  Y  C  H  I  L  S  F  S  R  *  K  R  N  T  L  L  K  P  G  H  P  T  H  C  C  S  T  Y  G  V  N  V  P  G  C  T  L  A  R  F  N  I  P  T  K  I  S  I  </second_frame>
            <third_frame>   F  S  L  C  F  L  P  N  S  S  R  *  S  V  S  H  I  I  S  F  P  T  S  A  I  A  T  Y  S  A  S  V  D  E  R  E  T  H  F  *  S  L  D  I  Q  L  T  V  V  P  P  M  V  *  M  Y  P  D  V  L  L  L  D  S  T  S  P  P  R  S  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0025K09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="123114" PGL_stop="115141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123114" e_stop="122852"/>
            <exon e_start="122780" e_stop="122643"/>
            <exon e_start="121942" e_stop="121853"/>
            <exon e_start="121084" e_stop="120273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123114" e_stop="122852" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122780" e_stop="122643" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.964">
            <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121942" e_stop="121853" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="121084" e_stop="120273" e_length="812"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123114" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123083" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123073" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123064" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123052" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123049" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123049" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123049" stop="122852"/>
              <exon start="122780" stop="122717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123048" stop="122861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123025" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122977" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122972" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122972" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122859" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121084" stop="120475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121082" stop="120596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121043" stop="120662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121014" stop="120596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120979" stop="120273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346148" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGACCAACAATCTGCTAATAATACAAATTTCACTATCATCATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG : GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG : GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG : GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTGTAAATGAGAATGGAGTCACTTGTGATGATCTTGAAATATTAATCTTTATTCATTACTTTTACTGATAAAAATAGAAGTTCTAAGTCATAAGCTGAGGTATTTAACATTTGTGGATACCTTGCTTGACCTTTCATACATGTATGTTTATTCCTTAAAATGAGTAGATAAATATACTGTATAAGCACTAGGTATAGAAGAAATAATAAGTTAATTAAGTAGGAAAGTTTCAAATGTTATTGAGTGAAGCTACTTCTCCTCTGCATAATCTTG</gDNA_template>
            <first_frame> Q  D  Q  Q  S  A  N  N  T  N  F  T  I  I  I  T  *  *  K  E  R  K  K  W  L  L  Y  R  S  L  *  N  T  L  F  L  L  C  S  N  M  L  K  P  Q  K  N  P  S  P  K  T  L  P  L  S  P  D  H  H  N  P  I  F  M  A  L  K  S  F  I  H  L  L  F  Q  P  H  L  L  Q  E  L  Q  L  L  L  R :   *  I  K  V  Q  R  L  H  H  S  H  *  K  I  K  M  E  K  M  *  V  S  P  S  L  K  E  S  L  W  W  F  I  S  T  L  L  M  K  L  L  V  A  P  N  R :   H  V  P  S  G  T  L  M  K  N  S  R  K  Q  G  L  K  L  L  E  L  V  V  M  I  L  N  P  T  R :   P  L  Q  R  S  T  G  S  H  L  P  C  C  V  M  K  A  T  K  L  G  K  S  G  E  S  R  E  T  F  L  V  H  C  L  V  D  R  L  M  C  L  T  R  M  E  W  F  N  S  Y  I  I  I  S  S  N  L  K  S  I  L  M  R  H  *  S  Y  F  K  V  F  K  R  Q  G  F  P  F  Y  I  L  F  L  P  L  A  N  K  V  L  V  L  F  L  P  L  M  C  A  N  C  M  L  S  D  R  L  Y  N  D  L  Y  F  I  D  A  K  G  A  V  S  L  K  S  F  Y  N  L  C  C  R  M  L  N  S  V  S  R  E  R  *  I  C  I  W  A  F  A  M  V  V  V  T  A  *  W  R  I  F  F  N  W  H  F  L  Q  L  L  K  P  Q  Q  W  W  I  I  *  *  I  V  N  E  N  G  V  T  C  D  D  L  E  I  L  I  F  I  H  Y  F  Y  *  *  K  *  K  F  *  V  I  S  *  G  I  *  H  L  W  I  P  C  L  T  F  H  T  C  M  F  I  P  *  N  E  *  I  N  I  L  Y  K  H  *  V  *  K  K  *  *  V  N  *  V  G  K  F  Q  M  L  L  S  E  A  T  S  P  L  H  N  L  </first_frame>
            <second_frame>  K  T  N  N  L  L  I  I  Q  I  S  L  S  S  S  H  S  R  K  R  E  K  N  G  F  S  I  G  L  C  K  T  H  S  S  F  S  A  P  I  C  S  N  P  K  K  T  H  L  P  K  P  Y  H  C  L  Q  I  I  T  I  P  F  L  W  P  *  S  P  S  F  T  F  F  F  N  P  I  F  F  K  N  F  N  C  C  *   : G  E  *  R  F  S  A  S  T  I  H  I  E  R  S  R  W  K  K  C  E  S  L  Q  V  *  R  K  A  C  G  G  L  F  L  P  C  *  *  N  S  W  L  H  Q  T   : G  M  C  L  Q  G  L  L  *  K  I  Q  E  S  R  G  S  S  C  W  N  *  W  *  *  Y  *  I  P  Q   : G  L  C  K  E  V  Q  A  P  I  Y  L  V  V  *  *  R  Q  Q  S  *  E  R  V  G  N  P  G  R  P  F  W  Y  I  A  W  *  T  D  L  C  A  *  Q  E  W  S  G  S  T  H  I  *  *  S  V  P  T  *  K  A  Y  *  *  D  I  E  V  T  S  K  S  L  N  V  K  V  S  P  S  T  F  F  S  C  L  *  P  I  K  F  L  Y  F  F  C  H  *  C  V  P  I  V  C  Y  L  I  G  C  T  T  T  Y  I  S  *  M  P  K  E  L  L  V  *  S  H  S  T  I  Y  V  V  E  C  *  T  R  S  P  A  R  D  K  F  V  Y  G  P  L  L  W  L  *  *  L  H  N  G  E  F  S  S  I  G  T  S  Y  S  C  *  N  P  N  S  G  G  S  Y  S  K  L  *  M  R  M  E  S  L  V  M  I  L  K  Y  *  S  L  F  I  T  F  T  D  K  N  R  S  S  K  S  *  A  E  V  F  N  I  C  G  Y  L  A  *  P  F  I  H  V  C  L  F  L  K  M  S  R  *  I  Y  C  I  S  T  R  Y  R  R  N  N  K  L  I  K  *  E  S  F  K  C  Y  *  V  K  L  L  L  L  C  I  I  L </second_frame>
            <third_frame>   R  P  T  I  C  *  *  Y  K  F  H  Y  H  H  H  I  V  E  R  E  K  K  M  A  S  L  S  V  S  V  K  H  T  L  P  S  L  L  Q  Y  A  Q  T  P  K  K  P  I  S  Q  N  L  T  I  V  S  R  S  S  Q  S  H  F  Y  G  L  E  V  L  H  S  P  S  F  S  T  P  S  S  S  R  T  S  I  V  A  K  :  V  N  K  G  S  A  P  P  P  F  T  L  K  D  Q  D  G  K  N  V  S  L  S  K  F  K  G  K  P  V  V  V  Y  F  Y  P  A  D  E  T  P  G  C  T  K  Q  :  A  C  A  F  R  D  S  Y  E  K  F  K  K  A  G  A  Q  V  V  G  I  S  G  D  D  I  E  S  H  K  :  A  F  A  K  K  Y  R  L  P  F  T  L  L  C  D  E  G  N  K  V  R  K  E  W  G  I  P  G  D  L  F  G  T  L  P  G  R  Q  T  Y  V  L  D  K  N  G  V  V  Q  L  I  Y  N  N  Q  F  Q  P  E  K  H  I  D  E  T  L  K  L  L  Q  S  L  *  T  S  R  F  P  L  L  H  S  F  P  A  S  S  Q  *  S  S  C  T  F  S  A  T  N  V  C  Q  L  Y  V  I  *  *  A  V  Q  R  L  I  F  H  R  C  Q  R  S  C  *  F  K  V  I  L  Q  F  M  L  *  N  V  E  L  G  L  P  R  E  I  N  L  Y  M  G  L  C  Y  G  C  S  N  C  I  M  E  N  F  L  Q  L  A  L  L  T  V  V  E  T  P  T  V  V  D  H  I  V  N  C  K  *  E  W  S  H  L  *  *  S  *  N  I  N  L  Y  S  L  L  L  L  I  K  I  E  V  L  S  H  K  L  R  Y  L  T  F  V  D  T  L  L  D  L  S  Y  M  Y  V  Y  S  L  K  *  V  D  K  Y  T  V  *  A  L  G  I  E  E  I  I  S  *  L  S  R  K  V  S  N  V  I  E  *  S  Y  F  S  S  A  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123091" stop="122852"/>
                    <exon start="122780" stop="122643"/>
                    <exon start="121942" stop="121853"/>
                    <exon start="121084" stop="120866"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKFHYHHHIVEREKKMASLSVSVKHTLPSLLQYAQTPKKPISQNLTIVSRSSQSHFYGLEVLHSPSFSTPSSSRTSIVAKVNKGSAPPPFTLKDQDGKNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAQVVGISGDDIESHKAFAKKYRLPFTLLCDEGNKVRKEWGIPGDLFGTLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKLLQSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120885" stop="120658"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYFKVFKRQGFPFYILFLPLANKVLVLFLPLMCANCMLSDRLYNDLYFIDAKGAVSLKSFYNLCCRMLNSVSRER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123114" e_stop="122852"/>
            <exon e_start="122780" e_stop="122643"/>
            <exon e_start="121942" e_stop="121853"/>
            <exon e_start="121084" e_stop="120596"/>
            <exon e_start="118891" e_stop="118847"/>
            <exon e_start="115167" e_stop="115141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.382" acc_prob="0.362" e_score="0.556"/>
          <exon-only e_score="0.519"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123114" e_stop="122852" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122780" e_stop="122643" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.964">
            <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121942" e_stop="121853" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121084" e_stop="120596" e_length="489"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="120595" i_stop="118892" i_length="1704"/>
          </intron>
          <exon e_serial="5" e_score="0.556">
            <gDNA_exon_boundary e_start="118891" e_stop="118847" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.382" acc_prob="0.362">
            <gDNA_intron_boundary i_start="118846" i_stop="115168" i_length="3679"/>
          </intron>
          <exon e_serial="6" e_score="0.519">
            <gDNA_exon_boundary e_start="115167" e_stop="115141" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123114" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123083" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123064" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123052" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123049" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123049" stop="122852"/>
              <exon start="122780" stop="122717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123048" stop="122861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123025" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122977" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122972" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122972" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122859" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122687" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120596"/>
              <exon start="118891" stop="118847"/>
              <exon start="115167" stop="115141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121082" stop="120596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121043" stop="120662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121014" stop="120596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGACCAACAATCTGCTAATAATACAAATTTCACTATCATCATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG : GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG : GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG : GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTG : GAACCACACAAACAAACAAACAATCAATAGATGGGAAGCCCCTTC : GTTGAGGGGTAGTTGGGCATTATCCCT</gDNA_template>
            <first_frame> Q  D  Q  Q  S  A  N  N  T  N  F  T  I  I  I  T  *  *  K  E  R  K  K  W  L  L  Y  R  S  L  *  N  T  L  F  L  L  C  S  N  M  L  K  P  Q  K  N  P  S  P  K  T  L  P  L  S  P  D  H  H  N  P  I  F  M  A  L  K  S  F  I  H  L  L  F  Q  P  H  L  L  Q  E  L  Q  L  L  L  R :   *  I  K  V  Q  R  L  H  H  S  H  *  K  I  K  M  E  K  M  *  V  S  P  S  L  K  E  S  L  W  W  F  I  S  T  L  L  M  K  L  L  V  A  P  N  R :   H  V  P  S  G  T  L  M  K  N  S  R  K  Q  G  L  K  L  L  E  L  V  V  M  I  L  N  P  T  R :   P  L  Q  R  S  T  G  S  H  L  P  C  C  V  M  K  A  T  K  L  G  K  S  G  E  S  R  E  T  F  L  V  H  C  L  V  D  R  L  M  C  L  T  R  M  E  W  F  N  S  Y  I  I  I  S  S  N  L  K  S  I  L  M  R  H  *  S  Y  F  K  V  F  K  R  Q  G  F  P  F  Y  I  L  F  L  P  L  A  N  K  V  L  V  L  F  L  P  L  M  C  A  N  C  M  L  S  D  R  L  Y  N  D  L  Y  F  I  D  A  K  G  A  V  S  L  K  S  F  Y  N  L  C  C  R  M  L  N  S  V  S  R  E  R  *  I  C  I  W  A  F  A  M  V  V  V  T  A  *  W  R  I  F  F  N  W :   N  H  T  N  K  Q  T  I  N  R  W  E  A  P  S :   L  R  G  S  W  A  L  S   </first_frame>
            <second_frame>  K  T  N  N  L  L  I  I  Q  I  S  L  S  S  S  H  S  R  K  R  E  K  N  G  F  S  I  G  L  C  K  T  H  S  S  F  S  A  P  I  C  S  N  P  K  K  T  H  L  P  K  P  Y  H  C  L  Q  I  I  T  I  P  F  L  W  P  *  S  P  S  F  T  F  F  F  N  P  I  F  F  K  N  F  N  C  C  *   : G  E  *  R  F  S  A  S  T  I  H  I  E  R  S  R  W  K  K  C  E  S  L  Q  V  *  R  K  A  C  G  G  L  F  L  P  C  *  *  N  S  W  L  H  Q  T   : G  M  C  L  Q  G  L  L  *  K  I  Q  E  S  R  G  S  S  C  W  N  *  W  *  *  Y  *  I  P  Q   : G  L  C  K  E  V  Q  A  P  I  Y  L  V  V  *  *  R  Q  Q  S  *  E  R  V  G  N  P  G  R  P  F  W  Y  I  A  W  *  T  D  L  C  A  *  Q  E  W  S  G  S  T  H  I  *  *  S  V  P  T  *  K  A  Y  *  *  D  I  E  V  T  S  K  S  L  N  V  K  V  S  P  S  T  F  F  S  C  L  *  P  I  K  F  L  Y  F  F  C  H  *  C  V  P  I  V  C  Y  L  I  G  C  T  T  T  Y  I  S  *  M  P  K  E  L  L  V  *  S  H  S  T  I  Y  V  V  E  C  *  T  R  S  P  A  R  D  K  F  V  Y  G  P  L  L  W  L  *  *  L  H  N  G  E  F  S  S  I   : G  T  T  Q  T  N  K  Q  S  I  D  G  K  P  L   : R  *  G  V  V  G  H  Y  P  </second_frame>
            <third_frame>   R  P  T  I  C  *  *  Y  K  F  H  Y  H  H  H  I  V  E  R  E  K  K  M  A  S  L  S  V  S  V  K  H  T  L  P  S  L  L  Q  Y  A  Q  T  P  K  K  P  I  S  Q  N  L  T  I  V  S  R  S  S  Q  S  H  F  Y  G  L  E  V  L  H  S  P  S  F  S  T  P  S  S  S  R  T  S  I  V  A  K  :  V  N  K  G  S  A  P  P  P  F  T  L  K  D  Q  D  G  K  N  V  S  L  S  K  F  K  G  K  P  V  V  V  Y  F  Y  P  A  D  E  T  P  G  C  T  K  Q  :  A  C  A  F  R  D  S  Y  E  K  F  K  K  A  G  A  Q  V  V  G  I  S  G  D  D  I  E  S  H  K  :  A  F  A  K  K  Y  R  L  P  F  T  L  L  C  D  E  G  N  K  V  R  K  E  W  G  I  P  G  D  L  F  G  T  L  P  G  R  Q  T  Y  V  L  D  K  N  G  V  V  Q  L  I  Y  N  N  Q  F  Q  P  E  K  H  I  D  E  T  L  K  L  L  Q  S  L  *  T  S  R  F  P  L  L  H  S  F  P  A  S  S  Q  *  S  S  C  T  F  S  A  T  N  V  C  Q  L  Y  V  I  *  *  A  V  Q  R  L  I  F  H  R  C  Q  R  S  C  *  F  K  V  I  L  Q  F  M  L  *  N  V  E  L  G  L  P  R  E  I  N  L  Y  M  G  L  C  Y  G  C  S  N  C  I  M  E  N  F  L  Q  L  :  E  P  H  K  Q  T  N  N  Q  *  M  G  S  P  F  :  V  E  G  *  L  G  I  I  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123091" stop="122852"/>
                    <exon start="122780" stop="122643"/>
                    <exon start="121942" stop="121853"/>
                    <exon start="121084" stop="120866"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKFHYHHHIVEREKKMASLSVSVKHTLPSLLQYAQTPKKPISQNLTIVSRSSQSHFYGLEVLHSPSFSTPSSSRTSIVAKVNKGSAPPPFTLKDQDGKNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAQVVGISGDDIESHKAFAKKYRLPFTLLCDEGNKVRKEWGIPGDLFGTLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKLLQSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120885" stop="120658"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYFKVFKRQGFPFYILFLPLANKVLVLFLPLMCANCMLSDRLYNDLYFIDAKGAVSLKSFYNLCCRMLNSVSRER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="123114" e_stop="122852"/>
            <exon e_start="122780" e_stop="122643"/>
            <exon e_start="121942" e_stop="121853"/>
            <exon e_start="121084" e_stop="120600"/>
            <exon e_start="119547" e_stop="119499"/>
            <exon e_start="119285" e_stop="119229"/>
            <exon e_start="118891" e_stop="118873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.022" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="0.592"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="0.596"/>
          <exon-only e_score="0.632"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123114" e_stop="122852" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122780" e_stop="122643" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.964">
            <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121942" e_stop="121853" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121084" e_stop="120600" e_length="485"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.022">
            <gDNA_intron_boundary i_start="120599" i_stop="119548" i_length="1052"/>
          </intron>
          <exon e_serial="5" e_score="0.592">
            <gDNA_exon_boundary e_start="119547" e_stop="119499" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119498" i_stop="119286" i_length="213"/>
          </intron>
          <exon e_serial="6" e_score="0.596">
            <gDNA_exon_boundary e_start="119285" e_stop="119229" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="119228" i_stop="118892" i_length="337"/>
          </intron>
          <exon e_serial="7" e_score="0.632">
            <gDNA_exon_boundary e_start="118891" e_stop="118873" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123114" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123083" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123064" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123052" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123049" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123049" stop="122852"/>
              <exon start="122780" stop="122717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123048" stop="122861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123025" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122977" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122972" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122972" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122859" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121043" stop="120662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120924" stop="120600"/>
              <exon start="119547" stop="119499"/>
              <exon start="119285" stop="119229"/>
              <exon start="118891" stop="118873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGACCAACAATCTGCTAATAATACAAATTTCACTATCATCATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG : GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG : GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG : GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCA : ATTGAAAAAGAAAAAAAAGAATGGAGCTCACCATGGGAGAAAGCATGTG : ATTGAAAATTTATTAAATTATGATTCAAAATTTATAACTCGGACGGTTTTCAATTCT : GAACCACACAAACAAACAA</gDNA_template>
            <first_frame> Q  D  Q  Q  S  A  N  N  T  N  F  T  I  I  I  T  *  *  K  E  R  K  K  W  L  L  Y  R  S  L  *  N  T  L  F  L  L  C  S  N  M  L  K  P  Q  K  N  P  S  P  K  T  L  P  L  S  P  D  H  H  N  P  I  F  M  A  L  K  S  F  I  H  L  L  F  Q  P  H  L  L  Q  E  L  Q  L  L  L  R :   *  I  K  V  Q  R  L  H  H  S  H  *  K  I  K  M  E  K  M  *  V  S  P  S  L  K  E  S  L  W  W  F  I  S  T  L  L  M  K  L  L  V  A  P  N  R :   H  V  P  S  G  T  L  M  K  N  S  R  K  Q  G  L  K  L  L  E  L  V  V  M  I  L  N  P  T  R :   P  L  Q  R  S  T  G  S  H  L  P  C  C  V  M  K  A  T  K  L  G  K  S  G  E  S  R  E  T  F  L  V  H  C  L  V  D  R  L  M  C  L  T  R  M  E  W  F  N  S  Y  I  I  I  S  S  N  L  K  S  I  L  M  R  H  *  S  Y  F  K  V  F  K  R  Q  G  F  P  F  Y  I  L  F  L  P  L  A  N  K  V  L  V  L  F  L  P  L  M  C  A  N  C  M  L  S  D  R  L  Y  N  D  L  Y  F  I  D  A  K  G  A  V  S  L  K  S  F  Y  N  L  C  C  R  M  L  N  S  V  S  R  E  R  *  I  C  I  W  A  F  A  M  V  V  V  T  A  *  W  R  I  F  F   : N  *  K  R  K  K  R  M  E  L  T  M  G  E  S  M  * :   L  K  I  Y  *  I  M  I  Q  N  L  *  L  G  R  F  S  I  L :   N  H  T  N  K  Q </first_frame>
            <second_frame>  K  T  N  N  L  L  I  I  Q  I  S  L  S  S  S  H  S  R  K  R  E  K  N  G  F  S  I  G  L  C  K  T  H  S  S  F  S  A  P  I  C  S  N  P  K  K  T  H  L  P  K  P  Y  H  C  L  Q  I  I  T  I  P  F  L  W  P  *  S  P  S  F  T  F  F  F  N  P  I  F  F  K  N  F  N  C  C  *   : G  E  *  R  F  S  A  S  T  I  H  I  E  R  S  R  W  K  K  C  E  S  L  Q  V  *  R  K  A  C  G  G  L  F  L  P  C  *  *  N  S  W  L  H  Q  T   : G  M  C  L  Q  G  L  L  *  K  I  Q  E  S  R  G  S  S  C  W  N  *  W  *  *  Y  *  I  P  Q   : G  L  C  K  E  V  Q  A  P  I  Y  L  V  V  *  *  R  Q  Q  S  *  E  R  V  G  N  P  G  R  P  F  W  Y  I  A  W  *  T  D  L  C  A  *  Q  E  W  S  G  S  T  H  I  *  *  S  V  P  T  *  K  A  Y  *  *  D  I  E  V  T  S  K  S  L  N  V  K  V  S  P  S  T  F  F  S  C  L  *  P  I  K  F  L  Y  F  F  C  H  *  C  V  P  I  V  C  Y  L  I  G  C  T  T  T  Y  I  S  *  M  P  K  E  L  L  V  *  S  H  S  T  I  Y  V  V  E  C  *  T  R  S  P  A  R  D  K  F  V  Y  G  P  L  L  W  L  *  *  L  H  N  G  E  F  S  S  :  I  E  K  E  K  K  E  W  S  S  P  W  E  K  A  C   : D  *  K  F  I  K  L  *  F  K  I  Y  N  S  D  G  F  Q  F   : *  T  T  Q  T  N   </second_frame>
            <third_frame>   R  P  T  I  C  *  *  Y  K  F  H  Y  H  H  H  I  V  E  R  E  K  K  M  A  S  L  S  V  S  V  K  H  T  L  P  S  L  L  Q  Y  A  Q  T  P  K  K  P  I  S  Q  N  L  T  I  V  S  R  S  S  Q  S  H  F  Y  G  L  E  V  L  H  S  P  S  F  S  T  P  S  S  S  R  T  S  I  V  A  K  :  V  N  K  G  S  A  P  P  P  F  T  L  K  D  Q  D  G  K  N  V  S  L  S  K  F  K  G  K  P  V  V  V  Y  F  Y  P  A  D  E  T  P  G  C  T  K  Q  :  A  C  A  F  R  D  S  Y  E  K  F  K  K  A  G  A  Q  V  V  G  I  S  G  D  D  I  E  S  H  K  :  A  F  A  K  K  Y  R  L  P  F  T  L  L  C  D  E  G  N  K  V  R  K  E  W  G  I  P  G  D  L  F  G  T  L  P  G  R  Q  T  Y  V  L  D  K  N  G  V  V  Q  L  I  Y  N  N  Q  F  Q  P  E  K  H  I  D  E  T  L  K  L  L  Q  S  L  *  T  S  R  F  P  L  L  H  S  F  P  A  S  S  Q  *  S  S  C  T  F  S  A  T  N  V  C  Q  L  Y  V  I  *  *  A  V  Q  R  L  I  F  H  R  C  Q  R  S  C  *  F  K  V  I  L  Q  F  M  L  *  N  V  E  L  G  L  P  R  E  I  N  L  Y  M  G  L  C  Y  G  C  S  N  C  I  M  E  N  F  L  Q :   L  K  K  K  K  K  N  G  A  H  H  G  R  K  H  V  :  I  E  N  L  L  N  Y  D  S  K  F  I  T  R  T  V  F  N  S  :  E  P  H  K  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123091" stop="122852"/>
                    <exon start="122780" stop="122643"/>
                    <exon start="121942" stop="121853"/>
                    <exon start="121084" stop="120866"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKFHYHHHIVEREKKMASLSVSVKHTLPSLLQYAQTPKKPISQNLTIVSRSSQSHFYGLEVLHSPSFSTPSSSRTSIVAKVNKGSAPPPFTLKDQDGKNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAQVVGISGDDIESHKAFAKKYRLPFTLLCDEGNKVRKEWGIPGDLFGTLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKLLQSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120885" stop="120658"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYFKVFKRQGFPFYILFLPLANKVLVLFLPLMCANCMLSDRLYNDLYFIDAKGAVSLKSFYNLCCRMLNSVSRER*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120688" stop="120600"/>
                    <exon start="119547" stop="119499"/>
                    <exon start="119285" stop="119229"/>
                    <exon start="118891" stop="118874"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVELGLPREINLYMGLCYGCSNCIMENFLQLKKKKKNGAHHGRKHVIENLLNYDSKFITRTVFNSEPHKQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="123114" e_stop="122852"/>
            <exon e_start="122780" e_stop="122643"/>
            <exon e_start="121942" e_stop="121853"/>
            <exon e_start="121084" e_stop="120600"/>
            <exon e_start="119547" e_stop="119499"/>
            <exon e_start="117819" e_stop="117805"/>
            <exon e_start="115730" e_stop="115693"/>
            <exon e_start="115313" e_stop="115292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.022" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="0.571"/>
          <exon-intron don_prob="0.877" acc_prob="0.929" e_score="0.667"/>
          <exon-intron don_prob="0.830" acc_prob="0.268" e_score="0.474"/>
          <exon-only e_score="0.682"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123114" e_stop="122852" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122780" e_stop="122643" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.964">
            <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121942" e_stop="121853" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121084" e_stop="120600" e_length="485"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.022">
            <gDNA_intron_boundary i_start="120599" i_stop="119548" i_length="1052"/>
          </intron>
          <exon e_serial="5" e_score="0.571">
            <gDNA_exon_boundary e_start="119547" e_stop="119499" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119498" i_stop="117820" i_length="1679"/>
          </intron>
          <exon e_serial="6" e_score="0.667">
            <gDNA_exon_boundary e_start="117819" e_stop="117805" e_length="15"/>
          </exon>
          <intron i_serial="6" don_prob="0.877" acc_prob="0.929">
            <gDNA_intron_boundary i_start="117804" i_stop="115731" i_length="2074"/>
          </intron>
          <exon e_serial="7" e_score="0.474">
            <gDNA_exon_boundary e_start="115730" e_stop="115693" e_length="38"/>
          </exon>
          <intron i_serial="7" don_prob="0.830" acc_prob="0.268">
            <gDNA_intron_boundary i_start="115692" i_stop="115314" i_length="379"/>
          </intron>
          <exon e_serial="8" e_score="0.682">
            <gDNA_exon_boundary e_start="115313" e_stop="115292" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123114" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123083" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123064" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123052" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123049" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123049" stop="122852"/>
              <exon start="122780" stop="122717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123048" stop="122861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123025" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122977" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122972" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122972" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122859" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121043" stop="120662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120954" stop="120600"/>
              <exon start="119547" stop="119499"/>
              <exon start="117819" stop="117805"/>
              <exon start="115730" stop="115693"/>
              <exon start="115313" stop="115292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGACCAACAATCTGCTAATAATACAAATTTCACTATCATCATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG : GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG : GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG : GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCA : ATTGAAAAAGAAAAAAAAGAATGGAGCTCACCATGGGAGAAAGCATGTG : CCATATCTATCTCAA : CTTAATGAAGACGGAAAAATAAGTATAGTGCCAAATCC : TTTGAAAAAAAAAAGTCAACCA</gDNA_template>
            <first_frame> Q  D  Q  Q  S  A  N  N  T  N  F  T  I  I  I  T  *  *  K  E  R  K  K  W  L  L  Y  R  S  L  *  N  T  L  F  L  L  C  S  N  M  L  K  P  Q  K  N  P  S  P  K  T  L  P  L  S  P  D  H  H  N  P  I  F  M  A  L  K  S  F  I  H  L  L  F  Q  P  H  L  L  Q  E  L  Q  L  L  L  R :   *  I  K  V  Q  R  L  H  H  S  H  *  K  I  K  M  E  K  M  *  V  S  P  S  L  K  E  S  L  W  W  F  I  S  T  L  L  M  K  L  L  V  A  P  N  R :   H  V  P  S  G  T  L  M  K  N  S  R  K  Q  G  L  K  L  L  E  L  V  V  M  I  L  N  P  T  R :   P  L  Q  R  S  T  G  S  H  L  P  C  C  V  M  K  A  T  K  L  G  K  S  G  E  S  R  E  T  F  L  V  H  C  L  V  D  R  L  M  C  L  T  R  M  E  W  F  N  S  Y  I  I  I  S  S  N  L  K  S  I  L  M  R  H  *  S  Y  F  K  V  F  K  R  Q  G  F  P  F  Y  I  L  F  L  P  L  A  N  K  V  L  V  L  F  L  P  L  M  C  A  N  C  M  L  S  D  R  L  Y  N  D  L  Y  F  I  D  A  K  G  A  V  S  L  K  S  F  Y  N  L  C  C  R  M  L  N  S  V  S  R  E  R  *  I  C  I  W  A  F  A  M  V  V  V  T  A  *  W  R  I  F  F   : N  *  K  R  K  K  R  M  E  L  T  M  G  E  S  M  C :   H  I  Y  L  N :   L  M  K  T  E  K  *  V  *  C  Q  I   : L  *  K  K  K  V  N   </first_frame>
            <second_frame>  K  T  N  N  L  L  I  I  Q  I  S  L  S  S  S  H  S  R  K  R  E  K  N  G  F  S  I  G  L  C  K  T  H  S  S  F  S  A  P  I  C  S  N  P  K  K  T  H  L  P  K  P  Y  H  C  L  Q  I  I  T  I  P  F  L  W  P  *  S  P  S  F  T  F  F  F  N  P  I  F  F  K  N  F  N  C  C  *   : G  E  *  R  F  S  A  S  T  I  H  I  E  R  S  R  W  K  K  C  E  S  L  Q  V  *  R  K  A  C  G  G  L  F  L  P  C  *  *  N  S  W  L  H  Q  T   : G  M  C  L  Q  G  L  L  *  K  I  Q  E  S  R  G  S  S  C  W  N  *  W  *  *  Y  *  I  P  Q   : G  L  C  K  E  V  Q  A  P  I  Y  L  V  V  *  *  R  Q  Q  S  *  E  R  V  G  N  P  G  R  P  F  W  Y  I  A  W  *  T  D  L  C  A  *  Q  E  W  S  G  S  T  H  I  *  *  S  V  P  T  *  K  A  Y  *  *  D  I  E  V  T  S  K  S  L  N  V  K  V  S  P  S  T  F  F  S  C  L  *  P  I  K  F  L  Y  F  F  C  H  *  C  V  P  I  V  C  Y  L  I  G  C  T  T  T  Y  I  S  *  M  P  K  E  L  L  V  *  S  H  S  T  I  Y  V  V  E  C  *  T  R  S  P  A  R  D  K  F  V  Y  G  P  L  L  W  L  *  *  L  H  N  G  E  F  S  S  :  I  E  K  E  K  K  E  W  S  S  P  W  E  K  A  C   : A  I  S  I  S   : T  *  *  R  R  K  N  K  Y  S  A  K  S  :  F  E  K  K  K  S  T  </second_frame>
            <third_frame>   R  P  T  I  C  *  *  Y  K  F  H  Y  H  H  H  I  V  E  R  E  K  K  M  A  S  L  S  V  S  V  K  H  T  L  P  S  L  L  Q  Y  A  Q  T  P  K  K  P  I  S  Q  N  L  T  I  V  S  R  S  S  Q  S  H  F  Y  G  L  E  V  L  H  S  P  S  F  S  T  P  S  S  S  R  T  S  I  V  A  K  :  V  N  K  G  S  A  P  P  P  F  T  L  K  D  Q  D  G  K  N  V  S  L  S  K  F  K  G  K  P  V  V  V  Y  F  Y  P  A  D  E  T  P  G  C  T  K  Q  :  A  C  A  F  R  D  S  Y  E  K  F  K  K  A  G  A  Q  V  V  G  I  S  G  D  D  I  E  S  H  K  :  A  F  A  K  K  Y  R  L  P  F  T  L  L  C  D  E  G  N  K  V  R  K  E  W  G  I  P  G  D  L  F  G  T  L  P  G  R  Q  T  Y  V  L  D  K  N  G  V  V  Q  L  I  Y  N  N  Q  F  Q  P  E  K  H  I  D  E  T  L  K  L  L  Q  S  L  *  T  S  R  F  P  L  L  H  S  F  P  A  S  S  Q  *  S  S  C  T  F  S  A  T  N  V  C  Q  L  Y  V  I  *  *  A  V  Q  R  L  I  F  H  R  C  Q  R  S  C  *  F  K  V  I  L  Q  F  M  L  *  N  V  E  L  G  L  P  R  E  I  N  L  Y  M  G  L  C  Y  G  C  S  N  C  I  M  E  N  F  L  Q :   L  K  K  K  K  K  N  G  A  H  H  G  R  K  H  V  :  P  Y  L  S  Q  :  L  N  E  D  G  K  I  S  I  V  P  N  P :   L  K  K  K  S  Q  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123091" stop="122852"/>
                    <exon start="122780" stop="122643"/>
                    <exon start="121942" stop="121853"/>
                    <exon start="121084" stop="120866"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKFHYHHHIVEREKKMASLSVSVKHTLPSLLQYAQTPKKPISQNLTIVSRSSQSHFYGLEVLHSPSFSTPSSSRTSIVAKVNKGSAPPPFTLKDQDGKNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAQVVGISGDDIESHKAFAKKYRLPFTLLCDEGNKVRKEWGIPGDLFGTLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKLLQSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120885" stop="120658"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYFKVFKRQGFPFYILFLPLANKVLVLFLPLMCANCMLSDRLYNDLYFIDAKGAVSLKSFYNLCCRMLNSVSRER*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120688" stop="120600"/>
                    <exon start="119547" stop="119499"/>
                    <exon start="117819" stop="117805"/>
                    <exon start="115730" stop="115693"/>
                    <exon start="115313" stop="115292"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVELGLPREINLYMGLCYGCSNCIMENFLQLKKKKKNGAHHGRKHVPYLSQLNEDGKISIVPNPLKKKSQP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="123114" e_stop="122852"/>
            <exon e_start="122780" e_stop="122643"/>
            <exon e_start="121942" e_stop="121853"/>
            <exon e_start="121084" e_stop="120858"/>
            <exon e_start="120763" e_stop="120584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.815" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123114" e_stop="122852" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122851" i_stop="122781" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122780" e_stop="122643" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.964">
            <gDNA_intron_boundary i_start="122642" i_stop="121943" i_length="700"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121942" e_stop="121853" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="121852" i_stop="121085" i_length="768"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121084" e_stop="120858" e_length="227"/>
          </exon>
          <intron i_serial="4" don_prob="0.815" acc_prob="0.944">
            <gDNA_intron_boundary i_start="120857" i_stop="120764" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120763" e_stop="120584" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123114" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123083" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123064" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123061" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123052" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="121011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123049" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123049" stop="122852"/>
              <exon start="122780" stop="122717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123048" stop="122861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123025" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122977" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122859" stop="122852"/>
              <exon start="122780" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122701" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120858"/>
              <exon start="120763" stop="120695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122686" stop="122643"/>
              <exon start="121942" stop="121853"/>
              <exon start="121084" stop="120858"/>
              <exon start="120763" stop="120584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGACCAACAATCTGCTAATAATACAAATTTCACTATCATCATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG : GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG : GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG : GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAG : GCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACA</gDNA_template>
            <first_frame> Q  D  Q  Q  S  A  N  N  T  N  F  T  I  I  I  T  *  *  K  E  R  K  K  W  L  L  Y  R  S  L  *  N  T  L  F  L  L  C  S  N  M  L  K  P  Q  K  N  P  S  P  K  T  L  P  L  S  P  D  H  H  N  P  I  F  M  A  L  K  S  F  I  H  L  L  F  Q  P  H  L  L  Q  E  L  Q  L  L  L  R :   *  I  K  V  Q  R  L  H  H  S  H  *  K  I  K  M  E  K  M  *  V  S  P  S  L  K  E  S  L  W  W  F  I  S  T  L  L  M  K  L  L  V  A  P  N  R :   H  V  P  S  G  T  L  M  K  N  S  R  K  Q  G  L  K  L  L  E  L  V  V  M  I  L  N  P  T  R :   P  L  Q  R  S  T  G  S  H  L  P  C  C  V  M  K  A  T  K  L  G  K  S  G  E  S  R  E  T  F  L  V  H  C  L  V  D  R  L  M  C  L  T  R  M  E  W  F  N  S  Y  I  I  I  S  S  N  L  K  S  I  L  M  R  H  *  S  Y  F  K  V  F  K  R  Q   : G  C  T  T  T  Y  I  S  *  M  P  K  E  L  L  V  *  S  H  S  T  I  Y  V  V  E  C  *  T  R  S  P  A  R  D  K  F  V  Y  G  P  L  L  W  L  *  *  L  H  N  G  E  F  S  S  I  G  T  S  Y  </first_frame>
            <second_frame>  K  T  N  N  L  L  I  I  Q  I  S  L  S  S  S  H  S  R  K  R  E  K  N  G  F  S  I  G  L  C  K  T  H  S  S  F  S  A  P  I  C  S  N  P  K  K  T  H  L  P  K  P  Y  H  C  L  Q  I  I  T  I  P  F  L  W  P  *  S  P  S  F  T  F  F  F  N  P  I  F  F  K  N  F  N  C  C  *   : G  E  *  R  F  S  A  S  T  I  H  I  E  R  S  R  W  K  K  C  E  S  L  Q  V  *  R  K  A  C  G  G  L  F  L  P  C  *  *  N  S  W  L  H  Q  T   : G  M  C  L  Q  G  L  L  *  K  I  Q  E  S  R  G  S  S  C  W  N  *  W  *  *  Y  *  I  P  Q   : G  L  C  K  E  V  Q  A  P  I  Y  L  V  V  *  *  R  Q  Q  S  *  E  R  V  G  N  P  G  R  P  F  W  Y  I  A  W  *  T  D  L  C  A  *  Q  E  W  S  G  S  T  H  I  *  *  S  V  P  T  *  K  A  Y  *  *  D  I  E  V  T  S  K  S  L  N  V  K  :  A  V  Q  R  L  I  F  H  R  C  Q  R  S  C  *  F  K  V  I  L  Q  F  M  L  *  N  V  E  L  G  L  P  R  E  I  N  L  Y  M  G  L  C  Y  G  C  S  N  C  I  M  E  N  F  L  Q  L  A  L  L  T </second_frame>
            <third_frame>   R  P  T  I  C  *  *  Y  K  F  H  Y  H  H  H  I  V  E  R  E  K  K  M  A  S  L  S  V  S  V  K  H  T  L  P  S  L  L  Q  Y  A  Q  T  P  K  K  P  I  S  Q  N  L  T  I  V  S  R  S  S  Q  S  H  F  Y  G  L  E  V  L  H  S  P  S  F  S  T  P  S  S  S  R  T  S  I  V  A  K  :  V  N  K  G  S  A  P  P  P  F  T  L  K  D  Q  D  G  K  N  V  S  L  S  K  F  K  G  K  P  V  V  V  Y  F  Y  P  A  D  E  T  P  G  C  T  K  Q  :  A  C  A  F  R  D  S  Y  E  K  F  K  K  A  G  A  Q  V  V  G  I  S  G  D  D  I  E  S  H  K  :  A  F  A  K  K  Y  R  L  P  F  T  L  L  C  D  E  G  N  K  V  R  K  E  W  G  I  P  G  D  L  F  G  T  L  P  G  R  Q  T  Y  V  L  D  K  N  G  V  V  Q  L  I  Y  N  N  Q  F  Q  P  E  K  H  I  D  E  T  L  K  L  L  Q  S  L  *  T  S  R :   L  Y  N  D  L  Y  F  I  D  A  K  G  A  V  S  L  K  S  F  Y  N  L  C  C  R  M  L  N  S  V  S  R  E  R  *  I  C  I  W  A  F  A  M  V  V  V  T  A  *  W  R  I  F  F  N  W  H  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123091" stop="122852"/>
                    <exon start="122780" stop="122643"/>
                    <exon start="121942" stop="121853"/>
                    <exon start="121084" stop="120866"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKFHYHHHIVEREKKMASLSVSVKHTLPSLLQYAQTPKKPISQNLTIVSRSSQSHFYGLEVLHSPSFSTPSSSRTSIVAKVNKGSAPPPFTLKDQDGKNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAQVVGISGDDIESHKAFAKKYRLPFTLLCDEGNKVRKEWGIPGDLFGTLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKLLQSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="118227" PGL_stop="119992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118227" e_stop="118244"/>
            <exon e_start="118326" e_stop="118566"/>
            <exon e_start="119338" e_stop="119516"/>
            <exon e_start="119604" e_stop="119946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.672" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118227" e_stop="118244" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.672">
            <gDNA_intron_boundary i_start="118245" i_stop="118325" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118326" e_stop="118566" e_length="241"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="118567" i_stop="119337" i_length="771"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119338" e_stop="119516" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119517" i_stop="119603" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="119604" e_stop="119946" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118227" stop="118244"/>
              <exon start="118326" stop="118566"/>
              <exon start="119338" stop="119516"/>
              <exon start="119604" stop="119946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118227" stop="118244"/>
              <exon start="118326" stop="118566"/>
              <exon start="119338" stop="119516"/>
              <exon start="119604" stop="119816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118228" stop="118244"/>
              <exon start="118326" stop="118566"/>
              <exon start="119338" stop="119516"/>
              <exon start="119604" stop="119640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306506" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATCTCAAACTCTACAG : TGGTATGCATTTGATTTTGTGGTGATGTGCACTGGTAAATATGGAGATATCCCAAATATACCAAATTTTCCACCAAAAAAAGGGCCAAAAGAGTTTAATGGTCAAGTTCTTCATACCCTTGATTACTCTAAACTTGACCAAGAAGCATCTACTAAACTTATGAAAGGGAAGAAAGTTGTTGTTGTTGGCTATAAAAAATCAGCTATTGATCTTGCAGTGGAATGTGCTGAAGCTAATCAAG : GACCTGAAGGGCAACCCTGTACAATGGTTGTAAGGACTTTGCATTGGACAGTTCCACATTACTCTATTTGGGGTTTACCATTCTACTTGTTCTATTCAACTAGATCTTCTCAGTTTCTCCATGAAAGACCCAATCAAGGATTGTTTAGGACCCTTCTTTGCCACATGCTTTCTCCCATG : AGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGGAATGGAAACTTCCACTAGAGAAGTATGGACTGAAACCAGAACACCCTTTTGAGGAAGATTATGCATCATGTCAGATGGCTATCTTGCCTGAGAATTTCTTCACTGAGGCGGATAAGGGAAAAATCATGTTCAAAAGAACATCCAAGTGGTGGTTCTGGGAAGGAGGCGTTGAATTCGAGGACAACACCAAGTTGGAAGCTGATGTTGTCATACTTGCAACTGGTTTTGATGGGAAGAAAAAGATTAAAGCTATATTACCTGATCCCTTTCGCAGTCTGGTAGAGTTCCCCTCAGGCATGATACCCT</gDNA_template>
            <first_frame> Q  S  Q  T  L  Q  :  W  Y  A  F  D  F  V  V  M  C  T  G  K  Y  G  D  I  P  N  I  P  N  F  P  P  K  K  G  P  K  E  F  N  G  Q  V  L  H  T  L  D  Y  S  K  L  D  Q  E  A  S  T  K  L  M  K  G  K  K  V  V  V  V  G  Y  K  K  S  A  I  D  L  A  V  E  C  A  E  A  N  Q   : G  P  E  G  Q  P  C  T  M  V  V  R  T  L  H  W  T  V  P  H  Y  S  I  W  G  L  P  F  Y  L  F  Y  S  T  R  S  S  Q  F  L  H  E  R  P  N  Q  G  L  F  R  T  L  L  C  H  M  L  S  P  M  :  R  K  A  A  S  K  L  I  E  S  Y  L  E  W  K  L  P  L  E  K  Y  G  L  K  P  E  H  P  F  E  E  D  Y  A  S  C  Q  M  A  I  L  P  E  N  F  F  T  E  A  D  K  G  K  I  M  F  K  R  T  S  K  W  W  F  W  E  G  G  V  E  F  E  D  N  T  K  L  E  A  D  V  V  I  L  A  T  G  F  D  G  K  K  K  I  K  A  I  L  P  D  P  F  R  S  L  V  E  F  P  S  G  M  I  P  </first_frame>
            <second_frame>  N  L  K  L  Y  S :   G  M  H  L  I  L  W  *  C  A  L  V  N  M  E  I  S  Q  I  Y  Q  I  F  H  Q  K  K  G  Q  K  S  L  M  V  K  F  F  I  P  L  I  T  L  N  L  T  K  K  H  L  L  N  L  *  K  G  R  K  L  L  L  L  A  I  K  N  Q  L  L  I  L  Q  W  N  V  L  K  L  I  K  :  D  L  K  G  N  P  V  Q  W  L  *  G  L  C  I  G  Q  F  H  I  T  L  F  G  V  Y  H  S  T  C  S  I  Q  L  D  L  L  S  F  S  M  K  D  P  I  K  D  C  L  G  P  F  F  A  T  C  F  L  P  * :   E  K  Q  L  L  S  *  S  S  R  I  W  N  G  N  F  H  *  R  S  M  D  *  N  Q  N  T  L  L  R  K  I  M  H  H  V  R  W  L  S  C  L  R  I  S  S  L  R  R  I  R  E  K  S  C  S  K  E  H  P  S  G  G  S  G  K  E  A  L  N  S  R  T  T  P  S  W  K  L  M  L  S  Y  L  Q  L  V  L  M  G  R  K  R  L  K  L  Y  Y  L  I  P  F  A  V  W  *  S  S  P  Q  A  *  Y  P </second_frame>
            <third_frame>   I  S  N  S  T   : V  V  C  I  *  F  C  G  D  V  H  W  *  I  W  R  Y  P  K  Y  T  K  F  S  T  K  K  R  A  K  R  V  *  W  S  S  S  S  Y  P  *  L  L  *  T  *  P  R  S  I  Y  *  T  Y  E  R  E  E  S  C  C  C  W  L  *  K  I  S  Y  *  S  C  S  G  M  C  *  S  *  S  R :   T  *  R  A  T  L  Y  N  G  C  K  D  F  A  L  D  S  S  T  L  L  Y  L  G  F  T  I  L  L  V  L  F  N  *  I  F  S  V  S  P  *  K  T  Q  S  R  I  V  *  D  P  S  L  P  H  A  F  S  H   : E  K  S  S  F  *  V  N  R  V  V  F  G  M  E  T  S  T  R  E  V  W  T  E  T  R  T  P  F  *  G  R  L  C  I  M  S  D  G  Y  L  A  *  E  F  L  H  *  G  G  *  G  K  N  H  V  Q  K  N  I  Q  V  V  V  L  G  R  R  R  *  I  R  G  Q  H  Q  V  G  S  *  C  C  H  T  C  N  W  F  *  W  E  E  K  D  *  S  Y  I  T  *  S  L  S  Q  S  G  R  V  P  L  R  H  D  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118227" stop="118244"/>
                    <exon start="118326" stop="118566"/>
                    <exon start="119338" stop="119516"/>
                    <exon start="119604" stop="119945"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSQTLQWYAFDFVVMCTGKYGDIPNIPNFPPKKGPKEFNGQVLHTLDYSKLDQEASTKLMKGKKVVVVGYKKSAIDLAVECAEANQGPEGQPCTMVVRTLHWTVPHYSIWGLPFYLFYSTRSSQFLHERPNQGLFRTLLCHMLSPMRKAASKLIESYLEWKLPLEKYGLKPEHPFEEDYASCQMAILPENFFTEADKGKIMFKRTSKWWFWEGGVEFEDNTKLEADVVILATGFDGKKKIKAILPDPFRSLVEFPSGMIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="119486" e_stop="119992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="119486" e_stop="119992" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119486" stop="119992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250010" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACCCTTCTTTGCCACATGCTTTCTCCCATGGTGAGCTCCATTCTTTTTTTTCTTTTTCAATCTAGTGCATCATTTGGCGTAGGACTAACAAAAGCGCGCTTATACATATGGTGACAGAGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGGAATGGAAACTTCCACTAGAGAAGTATGGACTGAAACCAGAACACCCTTTTGAGGAAGATTATGCATCATGTCAGATGGCTATCTTGCCTGAGAATTTCTTCACTGAGGCGGATAAGGGAAAAATCATGTTCAAAAGAACATCCAAGTGGTGGTTCTGGGAAGGAGGCGTTGAATTCGAGGACAACACCAAGTTGGAAGCTGATGTTGTCATACTTGCAACTGGTTTTGATGGGAAGAAAAAGATTAAAGCTATATTACCTGATCCCTTTCGCAGTCTGGTAGAGTTCCCCTCAGGCATGATACCCTTGTACAGGGGTACAATCCACCCGTTGATACCAAATATGGCTTTCGT</gDNA_template>
            <first_frame> D  P  S  L  P  H  A  F  S  H  G  E  L  H  S  F  F  S  F  S  I  *  C  I  I  W  R  R  T  N  K  S  A  L  I  H  M  V  T  E  K  S  S  F  *  V  N  R  V  V  F  G  M  E  T  S  T  R  E  V  W  T  E  T  R  T  P  F  *  G  R  L  C  I  M  S  D  G  Y  L  A  *  E  F  L  H  *  G  G  *  G  K  N  H  V  Q  K  N  I  Q  V  V  V  L  G  R  R  R  *  I  R  G  Q  H  Q  V  G  S  *  C  C  H  T  C  N  W  F  *  W  E  E  K  D  *  S  Y  I  T  *  S  L  S  Q  S  G  R  V  P  L  R  H  D  T  L  V  Q  G  Y  N  P  P  V  D  T  K  Y  G  F  R </first_frame>
            <second_frame>  T  L  L  C  H  M  L  S  P  M  V  S  S  I  L  F  F  L  F  Q  S  S  A  S  F  G  V  G  L  T  K  A  R  L  Y  I  W  *  Q  R  K  A  A  S  K  L  I  E  S  Y  L  E  W  K  L  P  L  E  K  Y  G  L  K  P  E  H  P  F  E  E  D  Y  A  S  C  Q  M  A  I  L  P  E  N  F  F  T  E  A  D  K  G  K  I  M  F  K  R  T  S  K  W  W  F  W  E  G  G  V  E  F  E  D  N  T  K  L  E  A  D  V  V  I  L  A  T  G  F  D  G  K  K  K  I  K  A  I  L  P  D  P  F  R  S  L  V  E  F  P  S  G  M  I  P  L  Y  R  G  T  I  H  P  L  I  P  N  M  A  F   </second_frame>
            <third_frame>   P  F  F  A  T  C  F  L  P  W  *  A  P  F  F  F  F  F  F  N  L  V  H  H  L  A  *  D  *  Q  K  R  A  Y  T  Y  G  D  R  E  K  Q  L  L  S  *  S  S  R  I  W  N  G  N  F  H  *  R  S  M  D  *  N  Q  N  T  L  L  R  K  I  M  H  H  V  R  W  L  S  C  L  R  I  S  S  L  R  R  I  R  E  K  S  C  S  K  E  H  P  S  G  G  S  G  K  E  A  L  N  S  R  T  T  P  S  W  K  L  M  L  S  Y  L  Q  L  V  L  M  G  R  K  R  L  K  L  Y  Y  L  I  P  F  A  V  W  *  S  S  P  Q  A  *  Y  P  C  T  G  V  Q  S  T  R  *  Y  Q  I  W  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119601" stop="119990"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRKAASKLIESYLEWKLPLEKYGLKPEHPFEEDYASCQMAILPENFFTEADKGKIMFKRTSKWWFWEGGVEFEDNTKLEADVVILATGFDGKKKIKAILPDPFRSLVEFPSGMIPLYRGTIHPLIPNMAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="120042" PGL_stop="120527"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120042" e_stop="120527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120042" e_stop="120527" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120042" stop="120511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120091" stop="120527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543813" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATGGCTATCACGACTTGTTGATGATCTGTTTAAGCTTCCATCTGTTGAGAAAATGCTTGAACAGATAACACAAGAGATGGAGATTATGAAGAGGACGACAAGATTCTACAAGAGAAATTGCATTTCCACTTTCAGTATTAACCATAGCGATGAAATCTGCCAAGAGATGGGATGGCAAGTTTGGAGGAAGACGAACTGGTTGGCTGAAGCCTTTAGCCCCTACAACAGCCAAGATTATGCAGAGGAGAAGTAGCTTCACTCAATAACATTTGAAACTTTCCTACTTAATTAACTTATTATTTCTTCTATACCTAGTGCTTATACAGTATATTTATCTACTCATTTTAAGGAATAAACATACATGTATGAAAGGTCAAGCAAGGTATCCACAAATGTTAAATACCTCAGCTTATGACTTAGAACTTCTATTTTTATCAGTAAAAGTAATGAATAAAGATTAATATTTCAAGATCATCACAAGTGA</gDNA_template>
            <first_frame> I  W  L  S  R  L  V  D  D  L  F  K  L  P  S  V  E  K  M  L  E  Q  I  T  Q  E  M  E  I  M  K  R  T  T  R  F  Y  K  R  N  C  I  S  T  F  S  I  N  H  S  D  E  I  C  Q  E  M  G  W  Q  V  W  R  K  T  N  W  L  A  E  A  F  S  P  Y  N  S  Q  D  Y  A  E  E  K  *  L  H  S  I  T  F  E  T  F  L  L  N  *  L  I  I  S  S  I  P  S  A  Y  T  V  Y  L  S  T  H  F  K  E  *  T  Y  M  Y  E  R  S  S  K  V  S  T  N  V  K  Y  L  S  L  *  L  R  T  S  I  F  I  S  K  S  N  E  *  R  L  I  F  Q  D  H  H  K  * </first_frame>
            <second_frame>  Y  G  Y  H  D  L  L  M  I  C  L  S  F  H  L  L  R  K  C  L  N  R  *  H  K  R  W  R  L  *  R  G  R  Q  D  S  T  R  E  I  A  F  P  L  S  V  L  T  I  A  M  K  S  A  K  R  W  D  G  K  F  G  G  R  R  T  G  W  L  K  P  L  A  P  T  T  A  K  I  M  Q  R  R  S  S  F  T  Q  *  H  L  K  L  S  Y  L  I  N  L  L  F  L  L  Y  L  V  L  I  Q  Y  I  Y  L  L  I  L  R  N  K  H  T  C  M  K  G  Q  A  R  Y  P  Q  M  L  N  T  S  A  Y  D  L  E  L  L  F  L  S  V  K  V  M  N  K  D  *  Y  F  K  I  I  T  S   </second_frame>
            <third_frame>   M  A  I  T  T  C  *  *  S  V  *  A  S  I  C  *  E  N  A  *  T  D  N  T  R  D  G  D  Y  E  E  D  D  K  I  L  Q  E  K  L  H  F  H  F  Q  Y  *  P  *  R  *  N  L  P  R  D  G  M  A  S  L  E  E  D  E  L  V  G  *  S  L  *  P  L  Q  Q  P  R  L  C  R  G  E  V  A  S  L  N  N  I  *  N  F  P  T  *  L  T  Y  Y  F  F  Y  T  *  C  L  Y  S  I  F  I  Y  S  F  *  G  I  N  I  H  V  *  K  V  K  Q  G  I  H  K  C  *  I  P  Q  L  M  T  *  N  F  Y  F  Y  Q  *  K  *  *  I  K  I  N  I  S  R  S  S  Q  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120042" stop="120296"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWLSRLVDDLFKLPSVEKMLEQITQEMEIMKRTTRFYKRNCISTFSINHSDEICQEMGWQVWRKTNWLAEAFSPYNSQDYAEEK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120310" stop="120504"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLKLSYLINLLFLLYLVLIQYIYLLILRNKHTCMKGQARYPQMLNTSAYDLELLFLSVKVMNKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 169 chains have been computed
$ 
$ memory statistics:
$ 898824 bytes spliced alignments in total
$ 91 spliced alignments have been stored
$ 9877 bytes was the average size of a spliced alignment
$ 23472 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1805 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 210 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 20:53:46
-->
