<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 21:06:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M791" ref_strand="+" ref_description="SGN-M791 SSR118 [est_by_read_no_qc_info]">
      <seq>ggaattatcttcctaccaaaacacttgactgaatgaataatcagatcaaacactctcttaaaaaacccgaaaaaattaaaatgaatttagtggttccacttgtttagacccttccttcttcttcttcttcttcttcttctctgcattacatacaagatttttctctgttcccctcacatttcttggagtatccccactgacccagatcggattcttgcaatatttatcaagtttcctgttacccatttcagattctgttggcaattgagagtgacaacttagtaaactgttttaaggaaaaagaaaggatttttagtgcataaagatcttatctttaagtttcttttgggtaactgaaatgcaaatctgttgttaaggacagatttcatgggttcttgttttagtattgaagaagatgaatcagaaccgcgaccacataacaagccagttggccatggagttggtgcatatcccagatcaaatcctgtaattccccagaatgcaaatcttaatgctcatgaccccgaaaaggcaaacagcattgtggtgattcccaaaaatgtcaaggacctgcggcagaatcctgggagtagcgaccttgatatcttcacatatgaagagatgaagttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15917" stop="13843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15617" g_stop="15170" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14326" g_stop="14143" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="632" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-M791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15617" e_stop="15170"/>
          <exon e_start="14326" e_stop="14143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTATCTTCCTACCAAAACACTTGACTGAATGAATAATCAGATCAAACACTCTCTTAAAAAACCCGAAAAAATTAAAATGAATTTAGTGGTTCCACTTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAGGTTTTTTTTTCTCTTTCTCTTTTTTTTTAATTGGTGGTTTTGATAGTTTTGTTATAGAATGCAAGTTTAAATTGTTCAGTGACTATAAAGCATATATGTGTGATGGATCCATTGATTAAGATCAATTGTTGTGTAAATGGAAAATTGTGCATTGATCTGTTTTTGTTGCGAATTGTGATGCTGCTTATGGAACTTCAAAAGTATAGTGAAGTTACTCCCTCCCTTCGCTTTTACTTGTCTAGTATTGACTTGGCATACCAATGGCAATTTTACTATATCGCTCCAAGTGATAAATTATCTTGATTTTTGAAACTGGACAAGTAAAAGTGGACGAGGGAGTACTATTATTGGTATTACCGTTGTTGCTAATCTCGAAATGGTTAAGGCCCTCTGATTGCCAAATATGGAAGGTGCCAGTCTGATTGGAATTTGGATGTCAGTAACCATTTGAGAATTATCAATTAAGTAGAGCCTGTGGCTCTAAATTTCGATGGCATTGCCTCTGAACTTGAATCACAATTGCCCTAATTCTTTTGATCAGGGAAATTACTTTGACCTTTTACTTACCCGAAGACCTTGAGATGTGAAACTTCGTGGTGATTTAAAGGGTAAAACTGACAGTTTACTAAGCTGTCATTCCATCTTAGACTATAATAGCTGTTGTCTAAATGAGAATCTCTGCAAATGTCATGAATGATACTATCTGATGTAAAAAAAGAAAAGGCTTTTACAGCATTGGATCTCCTAACTGCAAAGTAATTGAGTAAAAATTGTATCTTATCTTGAAGAGAATCTAATGTGAATATGATAATTGACGGCTTCTGTTTTTTCTTTTACTTCCAGTTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTC</genome_strand>
        <mrna_strand>GGAATTATCTTCCTACCAAAACACTTGACTGAATGAATAATCAGATCAAACACTCTCTTAAAAAACCCGAAAAAATTAAAATGAATTTAGTGGTTCCACTTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M791-2" ref_strand="+" ref_description="SGN-M791-2 SSR118-2 [est_by_read]">
      <seq>aattatcttcctaccaaaacacttgactgaatgaataatcagatcaaacactctcttaaaaaacccgaaaaaattaaaatgaatttagtggttccacttgtttagacccttccttcttcttcttcttcttcttcttctctgcattacatacaagatttttctctgttcccctcacatttcttggagtatccccactgacccagatcggattcttgcaatatttatcaagtttcctgttacccatttcagattctgttggcaattgagagtgacaacttagtaaactgttttaaggaaaaagaaaggatttttagtgcataaagatcttatctttaagtttcttttgggtaactgaaatgcaaatctgttgttaaggacagatttcatgggttcttgttttagtattgaagaagatgaatcagaaccgcgaccacataacaagccagttggccatggagttggtgcatatcccagatcaaatcctgtaattccccagaatgcaaatcttaatgctcatgaccccgaaaaggcaaacagcattgtggtgattcccaaaaatgtcaaagacctgcggcagaatcctaggagtagcgaccttgatatcttcacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15915" stop="13861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15615" g_stop="15170" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14326" g_stop="14161" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="612" r_length="166" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-M791-2" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M791-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15615" e_stop="15170"/>
          <exon e_start="14326" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCTTCCTACCAAAACACTTGACTGAATGAATAATCAGATCAAACACTCTCTTAAAAAACCCGAAAAAATTAAAATGAATTTAGTGGTTCCACTTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAGGTTTTTTTTTCTCTTTCTCTTTTTTTTTAATTGGTGGTTTTGATAGTTTTGTTATAGAATGCAAGTTTAAATTGTTCAGTGACTATAAAGCATATATGTGTGATGGATCCATTGATTAAGATCAATTGTTGTGTAAATGGAAAATTGTGCATTGATCTGTTTTTGTTGCGAATTGTGATGCTGCTTATGGAACTTCAAAAGTATAGTGAAGTTACTCCCTCCCTTCGCTTTTACTTGTCTAGTATTGACTTGGCATACCAATGGCAATTTTACTATATCGCTCCAAGTGATAAATTATCTTGATTTTTGAAACTGGACAAGTAAAAGTGGACGAGGGAGTACTATTATTGGTATTACCGTTGTTGCTAATCTCGAAATGGTTAAGGCCCTCTGATTGCCAAATATGGAAGGTGCCAGTCTGATTGGAATTTGGATGTCAGTAACCATTTGAGAATTATCAATTAAGTAGAGCCTGTGGCTCTAAATTTCGATGGCATTGCCTCTGAACTTGAATCACAATTGCCCTAATTCTTTTGATCAGGGAAATTACTTTGACCTTTTACTTACCCGAAGACCTTGAGATGTGAAACTTCGTGGTGATTTAAAGGGTAAAACTGACAGTTTACTAAGCTGTCATTCCATCTTAGACTATAATAGCTGTTGTCTAAATGAGAATCTCTGCAAATGTCATGAATGATACTATCTGATGTAAAAAAAGAAAAGGCTTTTACAGCATTGGATCTCCTAACTGCAAAGTAATTGAGTAAAAATTGTATCTTATCTTGAAGAGAATCTAATGTGAATATGATAATTGACGGCTTCTGTTTTTTCTTTTACTTCCAGTTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATA</genome_strand>
        <mrna_strand>AATTATCTTCCTACCAAAACACTTGACTGAATGAATAATCAGATCAAACACTCTCTTAAAAAACCCGAAAAAATTAAAATGAATTTAGTGGTTCCACTTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAAGACCTGCGGCAGAATCCTAGGAGTAGCGACCTTGATATCTTCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1526" ref_strand="+" ref_description="SGN-M1526 T0655 [cos_markers]">
      <seq>gaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacgtaagttttgaactgaagtctatcgtgttgctgttatctgaaaaaaggaaaaggatatgtgcatcatatacattattgacctggaattttcaaatttttctacttttgtacttatctcactcagaacaatcttttatgtgcagatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaggtaaagaatacactctgtactggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="87636" stop="79316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87336" g_stop="87291" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84891" g_stop="84657" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="281" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79851" g_stop="79616" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="517" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-M1526" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87336" e_stop="87291"/>
          <exon e_start="84891" e_stop="84657"/>
          <exon e_start="79851" e_stop="79616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCT</genome_strand>
        <mrna_strand>GAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="15617" PGL_stop="14143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15617" e_stop="15170"/>
            <exon e_start="14326" e_stop="14143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15617" e_stop="15170" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14326" e_stop="14143" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15617" stop="15170"/>
              <exon start="14326" stop="14143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15615" stop="15170"/>
              <exon start="14326" stop="14161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M791-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATTATCTTCCTACCAAAACACTTGACTGAATGAATAATCAGATCAAACACTCTCTTAAAAAACCCGAAAAAATTAAAATGAATTTAGTGGTTCCACTTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG : TTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTC</gDNA_template>
            <first_frame> G  I  I  F  L  P  K  H  L  T  E  *  I  I  R  S  N  T  L  L  K  N  P  K  K  L  K  *  I  *  W  F  H  L  F  R  P  F  L  L  L  L  L  L  L  L  L  C  I  T  Y  K  I  F  L  C  S  P  H  I  S  W  S  I  P  T  D  P  D  R  I  L  A  I  F  I  K  F  P  V  T  H  F  R  F  C  W  Q  L  R  V  T  T  *  *  T  V  L  R  K  K  K  G  F  L  V  H  K  D  L  I  F  K  F  L  L  G  N  *  N  A  N  L  L  L  R  T  D  F  M  G  S  C  F  S  I  E  E  D  E  S  E  P  R  P  H  N  K  P   : V  G  H  G  V  G  A  Y  P  R  S  N  P  V  I  P  Q  N  A  N  L  N  A  H  D  P  E  K  A  N  S  I  V  V  I  P  K  N  V  K  D  L  R  Q  N  P  G  S  S  D  L  D  I  F  T  Y  E  E  M  K  L   </first_frame>
            <second_frame>  E  L  S  S  Y  Q  N  T  *  L  N  E  *  S  D  Q  T  L  S  *  K  T  R  K  N  *  N  E  F  S  G  S  T  C  L  D  P  S  F  F  F  F  F  F  F  F  S  A  L  H  T  R  F  F  S  V  P  L  T  F  L  G  V  S  P  L  T  Q  I  G  F  L  Q  Y  L  S  S  F  L  L  P  I  S  D  S  V  G  N  *  E  *  Q  L  S  K  L  F  *  G  K  R  K  D  F  *  C  I  K  I  L  S  L  S  F  F  W  V  T  E  M  Q  I  C  C  *  G  Q  I  S  W  V  L  V  L  V  L  K  K  M  N  Q  N  R  D  H  I  T  S  Q  :  L  A  M  E  L  V  H  I  P  D  Q  I  L  *  F  P  R  M  Q  I  L  M  L  M  T  P  K  R  Q  T  A  L  W  *  F  P  K  M  S  R  T  C  G  R  I  L  G  V  A  T  L  I  S  S  H  M  K  R  *  S  C  </second_frame>
            <third_frame>   N  Y  L  P  T  K  T  L  D  *  M  N  N  Q  I  K  H  S  L  K  K  P  E  K  I  K  M  N  L  V  V  P  L  V  *  T  L  P  S  S  S  S  S  S  S  S  L  H  Y  I  Q  D  F  S  L  F  P  S  H  F  L  E  Y  P  H  *  P  R  S  D  S  C  N  I  Y  Q  V  S  C  Y  P  F  Q  I  L  L  A  I  E  S  D  N  L  V  N  C  F  K  E  K  E  R  I  F  S  A  *  R  S  Y  L  *  V  S  F  G  *  L  K  C  K  S  V  V  K  D  R  F  H  G  F  L  F  *  Y  *  R  R  *  I  R  T  A  T  T  *  Q  A  S :   W  P  W  S  W  C  I  S  Q  I  K  S  C  N  S  P  E  C  K  S  *  C  S  *  P  R  K  G  K  Q  H  C  G  D  S  Q  K  C  Q  G  P  A  A  E  S  W  E  *  R  P  *  Y  L  H  I  *  R  D  E  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15260" stop="15170"/>
                    <exon start="14326" stop="14145"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NANLLLRTDFMGSCFSIEEDESEPRPHNKPVGHGVGAYPRSNPVIPQNANLNAHDPEKANSIVVIPKNVKDLRQNPGSSDLDIFTYEEMKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="87336" PGL_stop="79616"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87336" e_stop="87291"/>
            <exon e_start="84891" e_stop="84657"/>
            <exon e_start="79851" e_stop="79616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.356" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87336" e_stop="87291" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84891" e_stop="84657" e_length="235"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.356">
            <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79851" e_stop="79616" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87336" stop="87291"/>
              <exon start="84891" stop="84657"/>
              <exon start="79851" stop="79616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1526" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG : GAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG : ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCT</gDNA_template>
            <first_frame> E  L  K  Q  L  S  D  D  T  N  T  Y  K  A  I   : G  R  T  *  V  L  N  *  S  L  S  C  C  C  Y  L  K  K  G  K  G  Y  V  H  H  I  H  Y  *  P  G  I  F  K  F  F  Y  F  C  T  Y  L  T  Q  N  N  L  L  C  A  D  L  S  *  S  Q  R  L  C  *  *  T  S  K  S  K  N  S  R  M  V  K  L  Q  L  P  L  C  R :   L  L  K  S  I  W  K  S  T  W  R  R  W  R  I  T  L  G  S  S  C  N  K  I  L  V  L  L  V  R  *  *  P  C  L  *  R  R  Y  L  L  L  L  K  F  L  L  S  T  L  S  L  E  E  K  K  N  D  S  F  S  K  I  F  W  N  F  K  F  *  V  K  N  T  L  C  T  G  </first_frame>
            <second_frame>  N  *  N  S  C  L  M  T  L  I  H  T  K  P  *  :  E  E  R  K  F  *  T  E  V  Y  R  V  A  V  I  *  K  K  E  K  D  M  C  I  I  Y  I  I  D  L  E  F  S  N  F  S  T  F  V  L  I  S  L  R  T  I  F  Y  V  Q  I  C  L  R  A  K  G  C  V  N  E  R  A  R  A  K  T  Q  G  W  *  N  C  N  C  L  F  A   : D  F  *  R  V  F  G  K  A  H  G  G  G  G  E  *  P  *  G  A  L  A  T  R  S  W  S  C  S  S  D  N  D  H  V  C  S  V  D  I  F  C  F  *  S  S  F  C  Q  L  F  P  W  K  K  K  K  T  I  A  S  Q  R  F  F  G  T  S  N  S  R  *  R  I  H  S  V  L  A </second_frame>
            <third_frame>   T  E  T  A  V  *  *  H  *  Y  I  Q  S  H  R :   K  N  V  S  F  E  L  K  S  I  V  L  L  L  S  E  K  R  K  R  I  C  A  S  Y  T  L  L  T  W  N  F  Q  I  F  L  L  L  Y  L  S  H  S  E  Q  S  F  M  C  R  F  V  L  E  P  K  A  V  L  M  N  E  Q  E  Q  K  L  K  D  G  E  T  A  I  A  S  L  Q  :  T  S  K  E  Y  L  E  K  H  M  A  E  V  E  N  N  L  R  E  L  L  Q  Q  D  P  G  L  A  R  Q  I  M  T  M  S  V  A  *  I  S  S  A  S  E  V  P  F  V  N  S  F  L  G  R  K  K  K  R  *  L  L  K  D  F  L  E  L  Q  I  L  G  K  E  Y  T  L  Y  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87307" stop="87291"/>
                    <exon start="84891" stop="84657"/>
                    <exon start="79851" stop="79738"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIQSHRKNVSFELKSIVLLLSEKRKRICASYTLLTWNFQIFLLLYLSHSEQSFMCRFVLEPKAVLMNEQEQKLKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLARQIMTMSVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 12 chains have been computed
$ 
$ memory statistics:
$ 6840 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 6800 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3400 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 12 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:06:24
-->
