<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 20:59:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249994" ref_strand="+" ref_description="SGN-E249994 [cLEG-4-F5]">
      <seq>cccccgggctgcaagtttatgttcttcaagttcatttgttaaaagagaagtagaaaactggtatttacaactttctaagaagagattataagttctataccatctttgcctttgtttaaattttgatgcaggaatttaacgcaaagctttctgactttggacttgcaaaagatgggcccatgggagatcaaacacatgtatcaactcgtgtgatgggcacttatggctatgctgctccagagtatgtcatgaccggacatttaacagccagaagtgatgtttatggttttggcgttgttttgcttgaaatgctcattggaaggagagctatggacaaaagtaaacctagccgggagcataaccttgtagagtttgctcggcctctcttgaatcatggcaagaagcttttcaagataattgaccccagactggacggtcaatactcctctaaaactgctttgaaagttgctaatctagcctatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="11989" stop="10609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11674" g_stop="11449" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="255" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11448" i_stop="11061" i_length="388">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11060" g_stop="10829" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="487" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E249994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11674" e_stop="11449"/>
          <exon e_start="11060" e_stop="10829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTGTTAAAAGAGAAGTAGAAAACTGGTATTTACAACTTTCTAAGAAGAGATTATAAGTTCTATACCATCTTTGCCTTTGTTTAAATTTTGATGCAGGAATTTAACGCAAAGCTTTCTGACTTTGGACTTGCAAAAGATGGGCCCATGGGAGATCAAACACATGTATCAACTCGTGTGATGGGCACTTATGGCTATGCTGCTCCAGAGTATGTCATGACCGGTAAGTCCTGTGGTTGCTTGTTGCACAAATCAGGCAAGCACAGAATAAATGCTTATGAGATACAGTAGTAAAGTAACTTCTGAGCCTAGCAAAGAACGATGGTTAGACCCATTTATGCCCAATTTCTCCTCAACCTTTAAAAAATTAGTGATTTGATGTTTTGGCTATCTTCTCTAACACTTATAGCACATCCATTTGCCTTCTGTAGCTGTTCAAAGGAACAGATTTGAAGACTCAAGTATTAAAATTCTTCTACATAAACCAGAGCATCTTGTTTATGCAGCCAAAGACCAAAATGTTATATACACCTTACTGGTTATCGTTTACTTTGAATAGGCATCGCTACCACCTGATGCTGTGAACTAAGATGTTTAATTGCATTATTCAGGACATTTAACAGCCAGAAGTGATGTTTATGGTTTTGGCGTTGTTTTGCTTGAAATGCTCATTGGAAGGAGAGCTATGGACAAAAGTAAACCTAGCCGGGAGCATAACCTTGTAGAGTTTGCTCGGCCTCTCTTGAATCATGGCAAGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GTTCATTTGTTAAAAGAGAAGTAGAAAACTGGTATTTACAACTTTCTAAGAAGAGATTATAAGTTCTATACCATCTTTGCCTTTGTTTAAATTTTGATGCAGGAATTTAACGCAAAGCTTTCTGACTTTGGACTTGCAAAAGATGGGCCCATGGGAGATCAAACACATGTATCAACTCGTGTGATGGGCACTTATGGCTATGCTGCTCCAGAGTATGTCATGACCG....................................................................................................................................................................................................................................................................................................................................................................................................GACATTTAACAGCCAGAAGTGATGTTTATGGTTTTGGCGTTGTTTTGCTTGAAATGCTCATTGGAAGGAGAGCTATGGACAAAAGTAAACCTAGCCGGGAGCATAACCTTGTAGAGTTTGCTCGGCCTCTCTTGAATCATGGCAAGAAGCTTTTCAAGATAATTGACCCCAGACTGGACGGTCAATACTCCTCTAAAACTGCTTTGAAAGTTGCTAATCTAGCCTATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208768" ref_strand="+" ref_description="SGN-E208768 [cLEC-51-B15]">
      <seq>attgtctacaaaggagttattgatgaaaatgtcagaccaggatacaagaccacatatgttgccattaaggagcttgatccagaaagtcttcagggcgacagagagtggctggcagaggtgaattacttggggcatattcgacatccgaatctggtgaagctgatagggtattgctgtgaggattaccatagactgttggcttatgaatatatggcatctggcagcctggaaaagcaccttttccctaaagtgtgtgctactctatcttggtcaagaagaatgagaattgctttggatgctgctaaagggcttgcttttcttcatggggctgaaaggcctataatatatagggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="14393" stop="11470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14093" g_stop="13983" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13982" i_stop="12346" i_length="1637">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12345" g_stop="12210" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="247" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12209" i_stop="11878" i_length="332">
            <donor d_prob="0.807" d_score="0.98"/>
            <acceptor a_prob="0.087" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11877" g_stop="11770" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="355" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E208768" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14093" e_stop="13983"/>
          <exon e_start="12345" e_stop="12210"/>
          <exon e_start="11877" e_stop="11770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCTACAAAGGAGTTATTGATGAAAATGTCAGACCAGGATACAAGACCACATATGTTGCCATTAAGGAGCTTGATCCAGAAAGTCTTCAGGGCGACAGAGAGTGGCTGGTAGGATTTCAGATTATTGACTATTAAACACCATTATACTAATTTACAGTCTCTGTAGAATTGAACTTTGGAATTCTGAGTGTCACTAGATTAGTAAAAGGATATTCTTTATATCTTTGAACCAATAAAATCAGCATATCCGTTTCTTGCATCAACTTTACAGAATTTTTGAACACCGACACTACCAAAATGGGGGGTTGACATGAAAATTGTAAAATACTGCTGCTGTTTTCCATGTTTTACGTTCTAATGATATCCCAGCATAAAAAGCTAATATGGGAACGTGGCATAAGGTGAAAAGAGAAGCATATAGATAGTTCTATAAAACATATACTGCCTGATATGTCTCCAGAAACTAGATGAAATCACCAAGTTTAGGATAGATTCCTCAGATTATTATTTTGAAGCATAACGGTGACTTGATTGTGGAAATGTGGCTTGATATTGTGATGTTAGTTGTAATATCATGCTGCTGTTCAGCTTTTGAGGTACAATTGTGTTGTCTAATCCAAAACATTCATGTTAACAAATCTCCTGAACGACATGATCTTTCCGTCTTATTTTACTAAGACTGAATGTTTATAACTTATATGAAACTGTGTAAATTGAGGGTGTGTTCAGTATGATGGAAATATTTTTCTTACAAAGTGCTTTCTCGGAAACTAAATGGGTTTCTTATTTATTTTCTTTGTGTTCGGTATGCAAGCAAAAAAATATTATCCTAAAAGCATTTGTATATAATCTAGACATATACTAAGAGGTGGAGGTGGAGGGTAGGGGGTGTGGGATGAAGATGAGGTGTGTTGGAAGGGAAGGGTGGGTATTTGTGCGGGGGTGGGGGGGTGGGGTGCAATATCAATGTGGAATGCCACTAGTAACTTGTTTTCAATACTTCCATTAGGGAAGTAATTTTTTCTCAAAATGTTTTCCTCCGTACCTAACATACTCTGTATGTTGGCTTCATGGACAATCGTGTAAACCATTGAACAATAAAAGAAACTTACATATTTTTGTATGATGCAACTTAATTGTGTTCAGAAGTGCCCTTGTGTCTTTCTCTTTCTCCAATATTCGATATAAAGAGGTCAGTTCTCCAGTTTTCTGATTGTAATTATAAGCAGTTGTATCATTCTGGTTCATCTGTTGTGTTTTTTCCATGGTTTTTGGTTGCTTCTTGTCTTTTAATAAATTCTTTTCACAAAATTTCTTTCTTTGTTTCCACTTGTCACTTATCTCTGTGCCAATCGCCTTTGTCTATTTCTCTAGCTACTCAAACAAGTAGTGTTTTTCAAGATGCTTCAGTGGATTTGACTTGTGGTCCAACTTTTTCTTTTTTTCCTTTGTGATATAAAGACCAAATATTTTGTTTTCAATCAATTCTTTGATGTCAATTAATATATTTTACATCTCAACCGCATACAAATTAATAGTGATGCATTTGGGAGTGTGGAAAGACATGTAAAGGTCGTGTACATTTTAGTCTGCTGTTCGACGAAAAAAATTGTCTTATGAACCAGACTTGCCACAATCACTCAGGTGTAAGTTCTACTACGATAATTTTCTTGAATGTGCAGCCAATTCAGCGACTTTGTTGTTCAATGGCATATCAATCTTTTATTTAACTCATTTACATGCAGGCAGAGGTGAATTACTTGGGGCATATTCGACATCCGAATCTGGTGAAGCTGATAGGGTATTGCTGTGAGGATTACCATAGACTGTTGGTTTATGAATATATGGCATCTGGCAGCCTGGAAAAGCACCTTTTCCCTAGTGAGTACTCAGTATCCATGTCAGTCCATGTTGATAAAGGGTAATAAGACTAATGTCCATTCTAGAACACAGAGAAACAACAGGCACTCATGAATTTTGGATTTACTTCCTAAACTCTCAGAGAGACTTTAAAATTTTGAATTAGTTCTATATAATCATGATGAAGACAATGCACCTATCTGTGCAGTGTCACTGAACTTAAAGAAATTAAGATATATTTCGTGAAAACTGTTCTTTGTTTCCAAATCCTTATTTAACTGGTCTGTATTTTCAGTAGTTTGTCCTCTATGAAAATTTTCTCTTCCTCTCTTCAACTATGGCTTGTGCTGTAGAAGTGTGTGCTACTCTATCTTGGTCAAGAAGAATGAGAATTGCTTTGGATGCTGCTAAAGGGCTTGCTTTTCTTCATGGGGCTGAAAGGCCTATAATATATAGGGACT</genome_strand>
        <mrna_strand>ATTGTCTACAAAGGAGTTATTGATGAAAATGTCAGACCAGGATACAAGACCACATATGTTGCCATTAAGGAGCTTGATCCAGAAAGTCTTCAGGGCGACAGAGAGTGGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGTGAATTACTTGGGGCATATTCGACATCCGAATCTGGTGAAGCTGATAGGGTATTGCTGTGAGGATTACCATAGACTGTTGGCTTATGAATATATGGCATCTGGCAGCCTGGAAAAGCACCTTTTCCCTA............................................................................................................................................................................................................................................................................................................................................AAGTGTGTGCTACTCTATCTTGGTCAAGAAGAATGAGAATTGCTTTGGATGCTGCTAAAGGGCTTGCTTTTCTTCATGGGGCTGAAAGGCCTATAATATATAGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316457" ref_strand="+" ref_description="SGN-E316457 [cTOA-25-N16]">
      <seq>aagatttttctctgttcccctcacatttcttggagtatccccactgacccagatcggattcttgcaatatttatcaagtttcctgttacccatttcagattctgttggcaattgagagtgacaacttagtaaactgttttaaggaaaaagaaaggatttttagtgcataaagatcttatctttaagtttcttttgggtaactgaaatgcaaatctgttgttaaggacagatttcatgggttcttgttttagtattgaagaagatgaatcagaaccgcgaccacataacaagccagttggccatggagttggtgcatatcccagatcaaatcctgtaattccccagaatgcaaatcttaatgctcatgaccccgaaaaggcaaacagcattgtggtgattcccaaaaatgtcaaggacctgcggcagaatcctgggagtagcgaccttgatatcttcacatatgaagagatgaagttgtctaccaagcacttccgaccagataaggtactcggagagggtgggtttggcattgtctacaaaggagttattgatgaaaatgtcagaccaggatacaagaccacatatgttgccattaaggagcttgatccagaaagtcttcagggcgacagagagtggctggcagaggtgaattacttggggcatattcgacatccgaatctggtgaagctgatanggtattgctgtgaggattacatagactgttggtttatgaatatatggcatctggcagcctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15764" stop="11926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15464" g_stop="15170" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14326" g_stop="13983" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="639" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13982" i_stop="12346" i_length="1637">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12345" g_stop="12226" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="758" r_length="119" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E316457" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15464" e_stop="15170"/>
          <exon e_start="14326" e_stop="13983"/>
          <exon e_start="12345" e_stop="12226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAGGTTTTTTTTTCTCTTTCTCTTTTTTTTTAATTGGTGGTTTTGATAGTTTTGTTATAGAATGCAAGTTTAAATTGTTCAGTGACTATAAAGCATATATGTGTGATGGATCCATTGATTAAGATCAATTGTTGTGTAAATGGAAAATTGTGCATTGATCTGTTTTTGTTGCGAATTGTGATGCTGCTTATGGAACTTCAAAAGTATAGTGAAGTTACTCCCTCCCTTCGCTTTTACTTGTCTAGTATTGACTTGGCATACCAATGGCAATTTTACTATATCGCTCCAAGTGATAAATTATCTTGATTTTTGAAACTGGACAAGTAAAAGTGGACGAGGGAGTACTATTATTGGTATTACCGTTGTTGCTAATCTCGAAATGGTTAAGGCCCTCTGATTGCCAAATATGGAAGGTGCCAGTCTGATTGGAATTTGGATGTCAGTAACCATTTGAGAATTATCAATTAAGTAGAGCCTGTGGCTCTAAATTTCGATGGCATTGCCTCTGAACTTGAATCACAATTGCCCTAATTCTTTTGATCAGGGAAATTACTTTGACCTTTTACTTACCCGAAGACCTTGAGATGTGAAACTTCGTGGTGATTTAAAGGGTAAAACTGACAGTTTACTAAGCTGTCATTCCATCTTAGACTATAATAGCTGTTGTCTAAATGAGAATCTCTGCAAATGTCATGAATGATACTATCTGATGTAAAAAAAGAAAAGGCTTTTACAGCATTGGATCTCCTAACTGCAAAGTAATTGAGTAAAAATTGTATCTTATCTTGAAGAGAATCTAATGTGAATATGATAATTGACGGCTTCTGTTTTTTCTTTTACTTCCAGTTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTCCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGCATTGTCTACAAAGGAGTTATTGATGAAAATGTCAGACCAGGATACAAGACCACATATGTTGCCATTAAGGAGCTTGATCCAGAAAGTCTTCAGGGCGACAGAGAGTGGCTGGTAGGATTTCAGATTATTGACTATTAAACACCATTATACTAATTTACAGTCTCTGTAGAATTGAACTTTGGAATTCTGAGTGTCACTAGATTAGTAAAAGGATATTCTTTATATCTTTGAACCAATAAAATCAGCATATCCGTTTCTTGCATCAACTTTACAGAATTTTTGAACACCGACACTACCAAAATGGGGGGTTGACATGAAAATTGTAAAATACTGCTGCTGTTTTCCATGTTTTACGTTCTAATGATATCCCAGCATAAAAAGCTAATATGGGAACGTGGCATAAGGTGAAAAGAGAAGCATATAGATAGTTCTATAAAACATATACTGCCTGATATGTCTCCAGAAACTAGATGAAATCACCAAGTTTAGGATAGATTCCTCAGATTATTATTTTGAAGCATAACGGTGACTTGATTGTGGAAATGTGGCTTGATATTGTGATGTTAGTTGTAATATCATGCTGCTGTTCAGCTTTTGAGGTACAATTGTGTTGTCTAATCCAAAACATTCATGTTAACAAATCTCCTGAACGACATGATCTTTCCGTCTTATTTTACTAAGACTGAATGTTTATAACTTATATGAAACTGTGTAAATTGAGGGTGTGTTCAGTATGATGGAAATATTTTTCTTACAAAGTGCTTTCTCGGAAACTAAATGGGTTTCTTATTTATTTTCTTTGTGTTCGGTATGCAAGCAAAAAAATATTATCCTAAAAGCATTTGTATATAATCTAGACATATACTAAGAGGTGGAGGTGGAGGGTAGGGGGTGTGGGATGAAGATGAGGTGTGTTGGAAGGGAAGGGTGGGTATTTGTGCGGGGGTGGGGGGGTGGGGTGCAATATCAATGTGGAATGCCACTAGTAACTTGTTTTCAATACTTCCATTAGGGAAGTAATTTTTTCTCAAAATGTTTTCCTCCGTACCTAACATACTCTGTATGTTGGCTTCATGGACAATCGTGTAAACCATTGAACAATAAAAGAAACTTACATATTTTTGTATGATGCAACTTAATTGTGTTCAGAAGTGCCCTTGTGTCTTTCTCTTTCTCCAATATTCGATATAAAGAGGTCAGTTCTCCAGTTTTCTGATTGTAATTATAAGCAGTTGTATCATTCTGGTTCATCTGTTGTGTTTTTTCCATGGTTTTTGGTTGCTTCTTGTCTTTTAATAAATTCTTTTCACAAAATTTCTTTCTTTGTTTCCACTTGTCACTTATCTCTGTGCCAATCGCCTTTGTCTATTTCTCTAGCTACTCAAACAAGTAGTGTTTTTCAAGATGCTTCAGTGGATTTGACTTGTGGTCCAACTTTTTCTTTTTTTCCTTTGTGATATAAAGACCAAATATTTTGTTTTCAATCAATTCTTTGATGTCAATTAATATATTTTACATCTCAACCGCATACAAATTAATAGTGATGCATTTGGGAGTGTGGAAAGACATGTAAAGGTCGTGTACATTTTAGTCTGCTGTTCGACGAAAAAAATTGTCTTATGAACCAGACTTGCCACAATCACTCAGGTGTAAGTTCTACTACGATAATTTTCTTGAATGTGCAGCCAATTCAGCGACTTTGTTGTTCAATGGCATATCAATCTTTTATTTAACTCATTTACATGCAGGCAGAGGTGAATTACTTGGGGCATATTCGACATCCGAATCTGGTGAAGCTGATAGGGTATTGCTGTGAGGATTACCATAGACTGTTGGTTTATGAATATATGGCATCTGGCAGCCTGGAA</genome_strand>
        <mrna_strand>AAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTCCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGCATTGTCTACAAAGGAGTTATTGATGAAAATGTCAGACCAGGATACAAGACCACATATGTTGCCATTAAGGAGCTTGATCCAGAAAGTCTTCAGGGCGACAGAGAGTGGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGTGAATTACTTGGGGCATATTCGACATCCGAATCTGGTGAAGCTGATANGGTATTGCTGTGAGGATTA-CATAGACTGTTGGTTTATGAATATATGGCATCTGGCAGCCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211102" ref_strand="+" ref_description="SGN-E211102 [cLEC-69-B4]">
      <seq>gtttcctgttacccatttcagattctgttggcaattgagagtgacaacttagtaaactgttttaaggaaaaagaaaggatttttagtgcataaagatcttatctttaagtttcttttgggtaactgaaatgcaaatctgttgttaaggacagatttcatgggttcttgttttagtattgaagaagatgaatcagaaccgcgaccacataacaagccagttggccatggagttggtgcatatcccagatcaaatcctgtaattccccagaatgcaaatcttaatgctcatgaccccgaaaaggcaaacagcattgtggtgattcccaaaaatgtcaaggacctgcggcagaatcctgggagtagcgaccttgatatcttcacatatgaagagatgaagttgtctaccaagcacttccgaccagataaggtactcggagagggtgggtttggcattgtctacaaaggagttattgatgaaaatgtcagaccaggatacaagaccacatatgttgccattaaggagcttgatccagaaagtcttcagggcgacagagagtggctggcagaggtgaattacttggggcatattcgacatccgaatctggtgaagctgatagggtattgctgtgaggattacatagactgttggtttatgaatatatggcatctggcagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15687" stop="11930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15387" g_stop="15170" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14326" g_stop="13983" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="562" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13982" i_stop="12346" i_length="1637">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12345" g_stop="12230" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="677" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E211102" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15387" e_stop="15170"/>
          <exon e_start="14326" e_stop="13983"/>
          <exon e_start="12345" e_stop="12230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAGGTTTTTTTTTCTCTTTCTCTTTTTTTTTAATTGGTGGTTTTGATAGTTTTGTTATAGAATGCAAGTTTAAATTGTTCAGTGACTATAAAGCATATATGTGTGATGGATCCATTGATTAAGATCAATTGTTGTGTAAATGGAAAATTGTGCATTGATCTGTTTTTGTTGCGAATTGTGATGCTGCTTATGGAACTTCAAAAGTATAGTGAAGTTACTCCCTCCCTTCGCTTTTACTTGTCTAGTATTGACTTGGCATACCAATGGCAATTTTACTATATCGCTCCAAGTGATAAATTATCTTGATTTTTGAAACTGGACAAGTAAAAGTGGACGAGGGAGTACTATTATTGGTATTACCGTTGTTGCTAATCTCGAAATGGTTAAGGCCCTCTGATTGCCAAATATGGAAGGTGCCAGTCTGATTGGAATTTGGATGTCAGTAACCATTTGAGAATTATCAATTAAGTAGAGCCTGTGGCTCTAAATTTCGATGGCATTGCCTCTGAACTTGAATCACAATTGCCCTAATTCTTTTGATCAGGGAAATTACTTTGACCTTTTACTTACCCGAAGACCTTGAGATGTGAAACTTCGTGGTGATTTAAAGGGTAAAACTGACAGTTTACTAAGCTGTCATTCCATCTTAGACTATAATAGCTGTTGTCTAAATGAGAATCTCTGCAAATGTCATGAATGATACTATCTGATGTAAAAAAAGAAAAGGCTTTTACAGCATTGGATCTCCTAACTGCAAAGTAATTGAGTAAAAATTGTATCTTATCTTGAAGAGAATCTAATGTGAATATGATAATTGACGGCTTCTGTTTTTTCTTTTACTTCCAGTTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTCCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGCATTGTCTACAAAGGAGTTATTGATGAAAATGTCAGACCAGGATACAAGACCACATATGTTGCCATTAAGGAGCTTGATCCAGAAAGTCTTCAGGGCGACAGAGAGTGGCTGGTAGGATTTCAGATTATTGACTATTAAACACCATTATACTAATTTACAGTCTCTGTAGAATTGAACTTTGGAATTCTGAGTGTCACTAGATTAGTAAAAGGATATTCTTTATATCTTTGAACCAATAAAATCAGCATATCCGTTTCTTGCATCAACTTTACAGAATTTTTGAACACCGACACTACCAAAATGGGGGGTTGACATGAAAATTGTAAAATACTGCTGCTGTTTTCCATGTTTTACGTTCTAATGATATCCCAGCATAAAAAGCTAATATGGGAACGTGGCATAAGGTGAAAAGAGAAGCATATAGATAGTTCTATAAAACATATACTGCCTGATATGTCTCCAGAAACTAGATGAAATCACCAAGTTTAGGATAGATTCCTCAGATTATTATTTTGAAGCATAACGGTGACTTGATTGTGGAAATGTGGCTTGATATTGTGATGTTAGTTGTAATATCATGCTGCTGTTCAGCTTTTGAGGTACAATTGTGTTGTCTAATCCAAAACATTCATGTTAACAAATCTCCTGAACGACATGATCTTTCCGTCTTATTTTACTAAGACTGAATGTTTATAACTTATATGAAACTGTGTAAATTGAGGGTGTGTTCAGTATGATGGAAATATTTTTCTTACAAAGTGCTTTCTCGGAAACTAAATGGGTTTCTTATTTATTTTCTTTGTGTTCGGTATGCAAGCAAAAAAATATTATCCTAAAAGCATTTGTATATAATCTAGACATATACTAAGAGGTGGAGGTGGAGGGTAGGGGGTGTGGGATGAAGATGAGGTGTGTTGGAAGGGAAGGGTGGGTATTTGTGCGGGGGTGGGGGGGTGGGGTGCAATATCAATGTGGAATGCCACTAGTAACTTGTTTTCAATACTTCCATTAGGGAAGTAATTTTTTCTCAAAATGTTTTCCTCCGTACCTAACATACTCTGTATGTTGGCTTCATGGACAATCGTGTAAACCATTGAACAATAAAAGAAACTTACATATTTTTGTATGATGCAACTTAATTGTGTTCAGAAGTGCCCTTGTGTCTTTCTCTTTCTCCAATATTCGATATAAAGAGGTCAGTTCTCCAGTTTTCTGATTGTAATTATAAGCAGTTGTATCATTCTGGTTCATCTGTTGTGTTTTTTCCATGGTTTTTGGTTGCTTCTTGTCTTTTAATAAATTCTTTTCACAAAATTTCTTTCTTTGTTTCCACTTGTCACTTATCTCTGTGCCAATCGCCTTTGTCTATTTCTCTAGCTACTCAAACAAGTAGTGTTTTTCAAGATGCTTCAGTGGATTTGACTTGTGGTCCAACTTTTTCTTTTTTTCCTTTGTGATATAAAGACCAAATATTTTGTTTTCAATCAATTCTTTGATGTCAATTAATATATTTTACATCTCAACCGCATACAAATTAATAGTGATGCATTTGGGAGTGTGGAAAGACATGTAAAGGTCGTGTACATTTTAGTCTGCTGTTCGACGAAAAAAATTGTCTTATGAACCAGACTTGCCACAATCACTCAGGTGTAAGTTCTACTACGATAATTTTCTTGAATGTGCAGCCAATTCAGCGACTTTGTTGTTCAATGGCATATCAATCTTTTATTTAACTCATTTACATGCAGGCAGAGGTGAATTACTTGGGGCATATTCGACATCCGAATCTGGTGAAGCTGATAGGGTATTGCTGTGAGGATTACCATAGACTGTTGGTTTATGAATATATGGCATCTGGCAGCCT</genome_strand>
        <mrna_strand>GTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTCCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGCATTGTCTACAAAGGAGTTATTGATGAAAATGTCAGACCAGGATACAAGACCACATATGTTGCCATTAAGGAGCTTGATCCAGAAAGTCTTCAGGGCGACAGAGAGTGGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGTGAATTACTTGGGGCATATTCGACATCCGAATCTGGTGAAGCTGATAGGGTATTGCTGTGAGGATTA-CATAGACTGTTGGTTTATGAATATATGGCATCTGGCAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730785" ref_strand="+" ref_description="SGN-E730785 [LA25AG07]">
      <seq>cttgtttagacccttccttcttcttcttcttcttcttcttctctgcattacatacaagatttttctctgttcccctcacatttcttggagtatccccactgacccagatcggattcttgcaatatttatcaagtttcctgttacccatttcagattctgttggcaattgagagtgacaacttagtaaactgttttaaggaaaaagaaaggatttttagtgcataaagatcttatctttaagtttcttttgggtaactgaaatgcaaatctgttgttaaggacagatttcatgggttcttgttttagtattgaagaagatgaatcagaaccgcgaccacataacaagccagttggccatggagttggtgcatatcccagatcaaatcctgtaattccccagaatgcaaatcttaatgctcatgaccccgaaaaggcaaacagcattgtggtgattcccaaaaatgtcaaggacctgcggcagaatcctgggagtagcgaccttgatatcttcacatatgaagagatgaagttgtctaccaagcacttccgaccagataaggtactcggagagggtgggcctgccattgtctacaaaggagcttattgatgaaaatgtcagaccaggatacaagaccacatatgttgccattaaggagcttgatccagaaagtcttcaaggcgacagagagtggctggcagaggtgaattacttggggcatattcgacatccgaatctggtgaagctgataaggtattgctgtgaggactaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15819" stop="11968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15519" g_stop="15170" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14326" g_stop="13983" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="695" r_length="345" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13982" i_stop="12346" i_length="1637">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12345" g_stop="12268" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="773" r_length="78" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E730785" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15519" e_stop="15170"/>
          <exon e_start="14326" e_stop="13983"/>
          <exon e_start="12345" e_stop="12268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAGGTTTTTTTTTCTCTTTCTCTTTTTTTTTAATTGGTGGTTTTGATAGTTTTGTTATAGAATGCAAGTTTAAATTGTTCAGTGACTATAAAGCATATATGTGTGATGGATCCATTGATTAAGATCAATTGTTGTGTAAATGGAAAATTGTGCATTGATCTGTTTTTGTTGCGAATTGTGATGCTGCTTATGGAACTTCAAAAGTATAGTGAAGTTACTCCCTCCCTTCGCTTTTACTTGTCTAGTATTGACTTGGCATACCAATGGCAATTTTACTATATCGCTCCAAGTGATAAATTATCTTGATTTTTGAAACTGGACAAGTAAAAGTGGACGAGGGAGTACTATTATTGGTATTACCGTTGTTGCTAATCTCGAAATGGTTAAGGCCCTCTGATTGCCAAATATGGAAGGTGCCAGTCTGATTGGAATTTGGATGTCAGTAACCATTTGAGAATTATCAATTAAGTAGAGCCTGTGGCTCTAAATTTCGATGGCATTGCCTCTGAACTTGAATCACAATTGCCCTAATTCTTTTGATCAGGGAAATTACTTTGACCTTTTACTTACCCGAAGACCTTGAGATGTGAAACTTCGTGGTGATTTAAAGGGTAAAACTGACAGTTTACTAAGCTGTCATTCCATCTTAGACTATAATAGCTGTTGTCTAAATGAGAATCTCTGCAAATGTCATGAATGATACTATCTGATGTAAAAAAAGAAAAGGCTTTTACAGCATTGGATCTCCTAACTGCAAAGTAATTGAGTAAAAATTGTATCTTATCTTGAAGAGAATCTAATGTGAATATGATAATTGACGGCTTCTGTTTTTTCTTTTACTTCCAGTTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTCCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGCATTGTCTACAAAGGAG-TTATTGATGAAAATGTCAGACCAGGATACAAGACCACATATGTTGCCATTAAGGAGCTTGATCCAGAAAGTCTTCAGGGCGACAGAGAGTGGCTGGTAGGATTTCAGATTATTGACTATTAAACACCATTATACTAATTTACAGTCTCTGTAGAATTGAACTTTGGAATTCTGAGTGTCACTAGATTAGTAAAAGGATATTCTTTATATCTTTGAACCAATAAAATCAGCATATCCGTTTCTTGCATCAACTTTACAGAATTTTTGAACACCGACACTACCAAAATGGGGGGTTGACATGAAAATTGTAAAATACTGCTGCTGTTTTCCATGTTTTACGTTCTAATGATATCCCAGCATAAAAAGCTAATATGGGAACGTGGCATAAGGTGAAAAGAGAAGCATATAGATAGTTCTATAAAACATATACTGCCTGATATGTCTCCAGAAACTAGATGAAATCACCAAGTTTAGGATAGATTCCTCAGATTATTATTTTGAAGCATAACGGTGACTTGATTGTGGAAATGTGGCTTGATATTGTGATGTTAGTTGTAATATCATGCTGCTGTTCAGCTTTTGAGGTACAATTGTGTTGTCTAATCCAAAACATTCATGTTAACAAATCTCCTGAACGACATGATCTTTCCGTCTTATTTTACTAAGACTGAATGTTTATAACTTATATGAAACTGTGTAAATTGAGGGTGTGTTCAGTATGATGGAAATATTTTTCTTACAAAGTGCTTTCTCGGAAACTAAATGGGTTTCTTATTTATTTTCTTTGTGTTCGGTATGCAAGCAAAAAAATATTATCCTAAAAGCATTTGTATATAATCTAGACATATACTAAGAGGTGGAGGTGGAGGGTAGGGGGTGTGGGATGAAGATGAGGTGTGTTGGAAGGGAAGGGTGGGTATTTGTGCGGGGGTGGGGGGGTGGGGTGCAATATCAATGTGGAATGCCACTAGTAACTTGTTTTCAATACTTCCATTAGGGAAGTAATTTTTTCTCAAAATGTTTTCCTCCGTACCTAACATACTCTGTATGTTGGCTTCATGGACAATCGTGTAAACCATTGAACAATAAAAGAAACTTACATATTTTTGTATGATGCAACTTAATTGTGTTCAGAAGTGCCCTTGTGTCTTTCTCTTTCTCCAATATTCGATATAAAGAGGTCAGTTCTCCAGTTTTCTGATTGTAATTATAAGCAGTTGTATCATTCTGGTTCATCTGTTGTGTTTTTTCCATGGTTTTTGGTTGCTTCTTGTCTTTTAATAAATTCTTTTCACAAAATTTCTTTCTTTGTTTCCACTTGTCACTTATCTCTGTGCCAATCGCCTTTGTCTATTTCTCTAGCTACTCAAACAAGTAGTGTTTTTCAAGATGCTTCAGTGGATTTGACTTGTGGTCCAACTTTTTCTTTTTTTCCTTTGTGATATAAAGACCAAATATTTTGTTTTCAATCAATTCTTTGATGTCAATTAATATATTTTACATCTCAACCGCATACAAATTAATAGTGATGCATTTGGGAGTGTGGAAAGACATGTAAAGGTCGTGTACATTTTAGTCTGCTGTTCGACGAAAAAAATTGTCTTATGAACCAGACTTGCCACAATCACTCAGGTGTAAGTTCTACTACGATAATTTTCTTGAATGTGCAGCCAATTCAGCGACTTTGTTGTTCAATGGCATATCAATCTTTTATTTAACTCATTTACATGCAGGCAGAGGTGAATTACTTGGGGCATATTCGACATCCGAATCTGGTGAAGCTGATAGGGTATTGCTGTGAGGATTACCAT</genome_strand>
        <mrna_strand>CTTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTCCGACCAGATAAGGTACTCGGAGAGGGTGGGCCTGCCATTGTCTACAAAGGAGCTTATTGATGAAAATGTCAGACCAGGATACAAGACCACATATGTTGCCATTAAGGAGCTTGATCCAGAAAGTCTTCAAGGCGACAGAGAGTGGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGTGAATTACTTGGGGCATATTCGACATCCGAATCTGGTGAAGCTGATAAGGTATTGCTGTGAGGACTACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358944" ref_strand="+" ref_description="SGN-E358944 [cLHT-24-F1]">
      <seq>attttttctgtttccttcacatttcttggaatatccccaccgacccagatcggattcttgcaatatttatcaagtttcctgtaacccatttcagattctgttggcaattgagagtgacaacttagtaaactgttttaaggaaaaagaaaggatttttagtgcagaaagattgtatctttaagttatttttgggtaaatgaaatgcaaatctgttgttaaggacagatttcatgggttcttgttttagtattgaagaagatgaatcagaaccgcgaccacataacaagccagttggccatggagttggtgcatatcccaggtcaaatcctgtaattccccagaatgcaaatcttaatgctcatgaccccgaaaaggcaaacagcattgtggtgattcccaaaaatgtcaaggacctgcggcagaatcctgggagtagcgaccttgatatcttcacatatgaagagatgaagttgtctaccaagcactttcgaccagataaggtactcggagagggtgggtttggcattgtctacaaaggagttattgatgaaaatgtcagaccaggatacaagaccacatatgttgccattaaggagcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15761" stop="13716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15461" g_stop="15170" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14326" g_stop="14016" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="602" r_length="311" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E358944" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15461" e_stop="15170"/>
          <exon e_start="14326" e_stop="14016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAGGTTTTTTTTTCTCTTTCTCTTTTTTTTTAATTGGTGGTTTTGATAGTTTTGTTATAGAATGCAAGTTTAAATTGTTCAGTGACTATAAAGCATATATGTGTGATGGATCCATTGATTAAGATCAATTGTTGTGTAAATGGAAAATTGTGCATTGATCTGTTTTTGTTGCGAATTGTGATGCTGCTTATGGAACTTCAAAAGTATAGTGAAGTTACTCCCTCCCTTCGCTTTTACTTGTCTAGTATTGACTTGGCATACCAATGGCAATTTTACTATATCGCTCCAAGTGATAAATTATCTTGATTTTTGAAACTGGACAAGTAAAAGTGGACGAGGGAGTACTATTATTGGTATTACCGTTGTTGCTAATCTCGAAATGGTTAAGGCCCTCTGATTGCCAAATATGGAAGGTGCCAGTCTGATTGGAATTTGGATGTCAGTAACCATTTGAGAATTATCAATTAAGTAGAGCCTGTGGCTCTAAATTTCGATGGCATTGCCTCTGAACTTGAATCACAATTGCCCTAATTCTTTTGATCAGGGAAATTACTTTGACCTTTTACTTACCCGAAGACCTTGAGATGTGAAACTTCGTGGTGATTTAAAGGGTAAAACTGACAGTTTACTAAGCTGTCATTCCATCTTAGACTATAATAGCTGTTGTCTAAATGAGAATCTCTGCAAATGTCATGAATGATACTATCTGATGTAAAAAAAGAAAAGGCTTTTACAGCATTGGATCTCCTAACTGCAAAGTAATTGAGTAAAAATTGTATCTTATCTTGAAGAGAATCTAATGTGAATATGATAATTGACGGCTTCTGTTTTTTCTTTTACTTCCAGTTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTCCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGCATTGTCTACAAAGGAGTTATTGATGAAAATGTCAGACCAGGATACAAGACCACATATGTTGCCATTAAGGAGCTTGAT</genome_strand>
        <mrna_strand>ATTTTT-TCTGTTTCCTTCACATTTCTTGGAATATCCCCACCGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTAACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCAGAAAGATTGTATCTTTAAGTTATTTTTGGGTAAATGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATGGAGTTGGTGCATATCCCAGGTCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTTCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGCATTGTCTACAAAGGAGTTATTGATGAAAATGTCAGACCAGGATACAAGACCACATATGTTGCCATTAAGGAGCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476157" ref_strand="+" ref_description="SGN-E476157 [cSTB-43-D7]">
      <seq>atttttgggttaatgaaatgcaaatctgttgttaaggacagatttcatggggtcttgttttagtattgaagaagatgaatcagaaccgcgaccacataacaagccagttggccatggagttggtgcatatcccaggtcaaatcctgtaattccccagaacacaaatcttaattctgatgacactgaaaaggcaaacagcattgtggtgattcccaaaaatgtcaaggacctgcggcagaatcctgggagtagcgaccttgatatcttcacatatgaagagatgaagttgtctaccaagcactttcgaccagataaggtactcggagagggtgggtttggcattgtctacaaaggagttattgatgaaaatgtcagaccaggatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15574" stop="13749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15276" g_stop="15170" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14326" g_stop="14049" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="385" r_length="278" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E476157" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15276" e_stop="15170"/>
          <exon e_start="14326" e_stop="14049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAGGTTTTTTTTTCTCTTTCTCTTTTTTTTTAATTGGTGGTTTTGATAGTTTTGTTATAGAATGCAAGTTTAAATTGTTCAGTGACTATAAAGCATATATGTGTGATGGATCCATTGATTAAGATCAATTGTTGTGTAAATGGAAAATTGTGCATTGATCTGTTTTTGTTGCGAATTGTGATGCTGCTTATGGAACTTCAAAAGTATAGTGAAGTTACTCCCTCCCTTCGCTTTTACTTGTCTAGTATTGACTTGGCATACCAATGGCAATTTTACTATATCGCTCCAAGTGATAAATTATCTTGATTTTTGAAACTGGACAAGTAAAAGTGGACGAGGGAGTACTATTATTGGTATTACCGTTGTTGCTAATCTCGAAATGGTTAAGGCCCTCTGATTGCCAAATATGGAAGGTGCCAGTCTGATTGGAATTTGGATGTCAGTAACCATTTGAGAATTATCAATTAAGTAGAGCCTGTGGCTCTAAATTTCGATGGCATTGCCTCTGAACTTGAATCACAATTGCCCTAATTCTTTTGATCAGGGAAATTACTTTGACCTTTTACTTACCCGAAGACCTTGAGATGTGAAACTTCGTGGTGATTTAAAGGGTAAAACTGACAGTTTACTAAGCTGTCATTCCATCTTAGACTATAATAGCTGTTGTCTAAATGAGAATCTCTGCAAATGTCATGAATGATACTATCTGATGTAAAAAAAGAAAAGGCTTTTACAGCATTGGATCTCCTAACTGCAAAGTAATTGAGTAAAAATTGTATCTTATCTTGAAGAGAATCTAATGTGAATATGATAATTGACGGCTTCTGTTTTTTCTTTTACTTCCAGTTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTCCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGCATTGTCTACAAAGGAGTTATTGATGAAAATGTCAGACCAGGATAC</genome_strand>
        <mrna_strand>ATTTTTGGGTTAATGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGGTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATGGAGTTGGTGCATATCCCAGGTCAAATCCTGTAATTCCCCAGAACACAAATCTTAATTCTGATGACACTGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTTCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGCATTGTCTACAAAGGAGTTATTGATGAAAATGTCAGACCAGGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576719" ref_strand="+" ref_description="SGN-E576719 [59981]">
      <seq>attttctagaagatttttctctgttcccctcacatttcttggaatatcccccaccgacccagatcgtattcttgcaaaattaatcaagtttcctgttacccatttcagattctgttggcaattgagagtggcaacttagtagagtgatttaaggaaaaagaaaggatttttagtgcataaagatcttatctttagtgggttttaagttatttttgggttaatgaaatgcaaatctgttgttaaggacagatttcatggggtcttgttttagtattgaagaagatgaatcagaaccgcgaccacataacaagccagttggccatggagttggtgcatatcccaggtcaaatcctgtaattccccagaacacaaatcttaattctcatgacactgaaaaggcaaacagcattgtggtgattcccaaaaatgtcaaggacctgcggcagaatcctgggagtagcgaccttgatatcttcacatatgaacgagatgaagttgtctaccaagcactttcgaccagataaggtactcggagagggtgggtttgggcattgtctacaaaggagttattgatgaaaaattgtcagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15772" stop="13757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15473" g_stop="15170" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14326" g_stop="14057" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="589" r_length="274" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E576719" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15473" e_stop="15170"/>
          <exon e_start="14326" e_stop="14057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTAT-CCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATC----------TTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAGGTTTTTTTTTCTCTTTCTCTTTTTTTTTAATTGGTGGTTTTGATAGTTTTGTTATAGAATGCAAGTTTAAATTGTTCAGTGACTATAAAGCATATATGTGTGATGGATCCATTGATTAAGATCAATTGTTGTGTAAATGGAAAATTGTGCATTGATCTGTTTTTGTTGCGAATTGTGATGCTGCTTATGGAACTTCAAAAGTATAGTGAAGTTACTCCCTCCCTTCGCTTTTACTTGTCTAGTATTGACTTGGCATACCAATGGCAATTTTACTATATCGCTCCAAGTGATAAATTATCTTGATTTTTGAAACTGGACAAGTAAAAGTGGACGAGGGAGTACTATTATTGGTATTACCGTTGTTGCTAATCTCGAAATGGTTAAGGCCCTCTGATTGCCAAATATGGAAGGTGCCAGTCTGATTGGAATTTGGATGTCAGTAACCATTTGAGAATTATCAATTAAGTAGAGCCTGTGGCTCTAAATTTCGATGGCATTGCCTCTGAACTTGAATCACAATTGCCCTAATTCTTTTGATCAGGGAAATTACTTTGACCTTTTACTTACCCGAAGACCTTGAGATGTGAAACTTCGTGGTGATTTAAAGGGTAAAACTGACAGTTTACTAAGCTGTCATTCCATCTTAGACTATAATAGCTGTTGTCTAAATGAGAATCTCTGCAAATGTCATGAATGATACTATCTGATGTAAAAAAAGAAAAGGCTTTTACAGCATTGGATCTCCTAACTGCAAAGTAATTGAGTAAAAATTGTATCTTATCTTGAAGAGAATCTAATGTGAATATGATAATTGACGGCTTCTGTTTTTTCTTTTACTTCCAGTTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAA-GAGATGAAGTTGTCTACCAAGCACTTCCGACCAGATAAGGTACTCGGAGAGGGTGGGTTT-GGCATTGTCTACAAAGGAGTTATTGATG-AAAA-TGTCAGAC</genome_strand>
        <mrna_strand>ATTTTCTAGAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAATATCCCCCACCGACCCAGATCGTATTCTTGCAAAATTAATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGGCAACTTAGTAGAGTGATTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAGTGGGTTTTAAGTTATTTTTGGGTTAATGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGGTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATGGAGTTGGTGCATATCCCAGGTCAAATCCTGTAATTCCCCAGAACACAAATCTTAATTCTCATGACACTGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAACGAGATGAAGTTGTCTACCAAGCACTTTCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGGCATTGTCTACAAAGGAGTTATTGATGAAAAATTGTCAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373499" ref_strand="+" ref_description="SGN-E373499 [TUS-31-F6]">
      <seq>ttgtttagacccttccttcttcttcttcttcttcttcttctctgcattacatacaagatttttctctgttcccctcacatttcttggagtatccccactgacccagatcggattcttgcaatatttatcaagtttcctgttacccatttcagattctgttggcaattgagagtgacaacttagtaaactgttttaaggaaaaagaaaggatttttagtgcataaagatcttatctttaagtttcttttgggtaactgaaatgcaaatctgttgttaaggacagatttcatgggttcttgttttagtattgaagaagatgaatcagaaccgcgaccacataacaagccagttggccatggagttggtgcatatcccagatcaaatcctgtaattccccagaatgcaaatcttaatgctcatgaccccgaaaaggcaaacagcattgtggtgattcccaaaaatgtcaaggacctgcggcagaatcctgggagtagcgaccttgatatcttcacatatgaagagatgaagttgtctaccaagcacttccgaccagataaggtactcggagagggtgggtttggcattgtctacaaaggagttattgatgaaaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15818" stop="13761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15518" g_stop="15170" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14326" g_stop="14061" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="615" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E373499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15518" e_stop="15170"/>
          <exon e_start="14326" e_stop="14061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAGGTTTTTTTTTCTCTTTCTCTTTTTTTTTAATTGGTGGTTTTGATAGTTTTGTTATAGAATGCAAGTTTAAATTGTTCAGTGACTATAAAGCATATATGTGTGATGGATCCATTGATTAAGATCAATTGTTGTGTAAATGGAAAATTGTGCATTGATCTGTTTTTGTTGCGAATTGTGATGCTGCTTATGGAACTTCAAAAGTATAGTGAAGTTACTCCCTCCCTTCGCTTTTACTTGTCTAGTATTGACTTGGCATACCAATGGCAATTTTACTATATCGCTCCAAGTGATAAATTATCTTGATTTTTGAAACTGGACAAGTAAAAGTGGACGAGGGAGTACTATTATTGGTATTACCGTTGTTGCTAATCTCGAAATGGTTAAGGCCCTCTGATTGCCAAATATGGAAGGTGCCAGTCTGATTGGAATTTGGATGTCAGTAACCATTTGAGAATTATCAATTAAGTAGAGCCTGTGGCTCTAAATTTCGATGGCATTGCCTCTGAACTTGAATCACAATTGCCCTAATTCTTTTGATCAGGGAAATTACTTTGACCTTTTACTTACCCGAAGACCTTGAGATGTGAAACTTCGTGGTGATTTAAAGGGTAAAACTGACAGTTTACTAAGCTGTCATTCCATCTTAGACTATAATAGCTGTTGTCTAAATGAGAATCTCTGCAAATGTCATGAATGATACTATCTGATGTAAAAAAAGAAAAGGCTTTTACAGCATTGGATCTCCTAACTGCAAAGTAATTGAGTAAAAATTGTATCTTATCTTGAAGAGAATCTAATGTGAATATGATAATTGACGGCTTCTGTTTTTTCTTTTACTTCCAGTTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTCCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGCATTGTCTACAAAGGAGTTATTGATGAAAATGTC</genome_strand>
        <mrna_strand>TTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTCCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGCATTGTCTACAAAGGAGTTATTGATGAAAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316569" ref_strand="+" ref_description="SGN-E316569 [cTOA-25-N15]">
      <seq>aagatttttctctgttcccctcacatttcttggagtatccccactgacccagatcggattcttgcaatatttatcaagtttcctgttacccatttcagattctgttggcaattgagagtgacaacttactaaactgttttaaggaaaaagaaaggatttttagtgcataaagatcttatctttaaatttcttttgggaaactgaaatgctaatctgttgataaggacagatttcatgggttcttgttttagtattgaagaagatgaatcataaccgccaccacataacaagccaattggccatggagttggtgcatatcccagatcaaatcctgtaattccccagaatgcaaatcttaatgctcatgaccccgaaaaggcaaacagcattgtggggattcccaaaaatgtcaaggacctgcagcagaatcctgtgagtatcgaccttgatatcttcacgtatgaagagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15764" stop="13850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15464" g_stop="15170" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14326" g_stop="14150" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="472" r_length="177" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E316569" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15464" e_stop="15170"/>
          <exon e_start="14326" e_stop="14150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAGGTTTTTTTTTCTCTTTCTCTTTTTTTTTAATTGGTGGTTTTGATAGTTTTGTTATAGAATGCAAGTTTAAATTGTTCAGTGACTATAAAGCATATATGTGTGATGGATCCATTGATTAAGATCAATTGTTGTGTAAATGGAAAATTGTGCATTGATCTGTTTTTGTTGCGAATTGTGATGCTGCTTATGGAACTTCAAAAGTATAGTGAAGTTACTCCCTCCCTTCGCTTTTACTTGTCTAGTATTGACTTGGCATACCAATGGCAATTTTACTATATCGCTCCAAGTGATAAATTATCTTGATTTTTGAAACTGGACAAGTAAAAGTGGACGAGGGAGTACTATTATTGGTATTACCGTTGTTGCTAATCTCGAAATGGTTAAGGCCCTCTGATTGCCAAATATGGAAGGTGCCAGTCTGATTGGAATTTGGATGTCAGTAACCATTTGAGAATTATCAATTAAGTAGAGCCTGTGGCTCTAAATTTCGATGGCATTGCCTCTGAACTTGAATCACAATTGCCCTAATTCTTTTGATCAGGGAAATTACTTTGACCTTTTACTTACCCGAAGACCTTGAGATGTGAAACTTCGTGGTGATTTAAAGGGTAAAACTGACAGTTTACTAAGCTGTCATTCCATCTTAGACTATAATAGCTGTTGTCTAAATGAGAATCTCTGCAAATGTCATGAATGATACTATCTGATGTAAAAAAAGAAAAGGCTTTTACAGCATTGGATCTCCTAACTGCAAAGTAATTGAGTAAAAATTGTATCTTATCTTGAAGAGAATCTAATGTGAATATGATAATTGACGGCTTCTGTTTTTTCTTTTACTTCCAGTTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGA</genome_strand>
        <mrna_strand>AAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTACTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAATTTCTTTTGGGAAACTGAAATGCTAATCTGTTGATAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCATAACCGCCACCACATAACAAGCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGGGATTCCCAAAAATGTCAAGGACCTGCAGCAGAATCCTGTGAGTATCGACCTTGATATCTTCACGTATGAAGAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330131" ref_strand="+" ref_description="SGN-E330131 [cTOD-5-H5]">
      <seq>aattatcttcctaccaaaacacttgactgaatgaataatcagatcaaacactctcttaaaaaacccgaaaaaattaaaatgaatttagtggttccacttgtttagacccttccttcttcttcttcttcttcttcttctctgcattacatacaagatttttctctgttcccctcacatttcttggagtatccccactgacccagatcggattcttgcaatatttatcaagtttcctgttacccatttcagattctgttggcaattgagagtgacaacttagtaaactgttttaaggaaaaagaaaggatttttagtgcataaagatcttatctttaagtttcttttgggtaactgaaatgcaaatctgttgttaaggacagatttcatgggttcttgttttagtattgaagaagatgaatcagaaccgcgaccacataacaagccagttggccatggagttggtgcatatcccagatcaaatcctgtaattccccagaatgcaaatcttaatgctcatgaccccgaaaaggcaaacagcattgtggtgattcccaaaaatgtcaaagacctgcggcagaatcctaggagtagcgaccttgatatcttcacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15915" stop="13861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15615" g_stop="15170" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14326" g_stop="14161" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="612" r_length="166" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E330131" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15615" e_stop="15170"/>
          <exon e_start="14326" e_stop="14161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATCTTCCTACCAAAACACTTGACTGAATGAATAATCAGATCAAACACTCTCTTAAAAAACCCGAAAAAATTAAAATGAATTTAGTGGTTCCACTTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAGGTTTTTTTTTCTCTTTCTCTTTTTTTTTAATTGGTGGTTTTGATAGTTTTGTTATAGAATGCAAGTTTAAATTGTTCAGTGACTATAAAGCATATATGTGTGATGGATCCATTGATTAAGATCAATTGTTGTGTAAATGGAAAATTGTGCATTGATCTGTTTTTGTTGCGAATTGTGATGCTGCTTATGGAACTTCAAAAGTATAGTGAAGTTACTCCCTCCCTTCGCTTTTACTTGTCTAGTATTGACTTGGCATACCAATGGCAATTTTACTATATCGCTCCAAGTGATAAATTATCTTGATTTTTGAAACTGGACAAGTAAAAGTGGACGAGGGAGTACTATTATTGGTATTACCGTTGTTGCTAATCTCGAAATGGTTAAGGCCCTCTGATTGCCAAATATGGAAGGTGCCAGTCTGATTGGAATTTGGATGTCAGTAACCATTTGAGAATTATCAATTAAGTAGAGCCTGTGGCTCTAAATTTCGATGGCATTGCCTCTGAACTTGAATCACAATTGCCCTAATTCTTTTGATCAGGGAAATTACTTTGACCTTTTACTTACCCGAAGACCTTGAGATGTGAAACTTCGTGGTGATTTAAAGGGTAAAACTGACAGTTTACTAAGCTGTCATTCCATCTTAGACTATAATAGCTGTTGTCTAAATGAGAATCTCTGCAAATGTCATGAATGATACTATCTGATGTAAAAAAAGAAAAGGCTTTTACAGCATTGGATCTCCTAACTGCAAAGTAATTGAGTAAAAATTGTATCTTATCTTGAAGAGAATCTAATGTGAATATGATAATTGACGGCTTCTGTTTTTTCTTTTACTTCCAGTTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATA</genome_strand>
        <mrna_strand>AATTATCTTCCTACCAAAACACTTGACTGAATGAATAATCAGATCAAACACTCTCTTAAAAAACCCGAAAAAATTAAAATGAATTTAGTGGTTCCACTTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAAGACCTGCGGCAGAATCCTAGGAGTAGCGACCTTGATATCTTCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287765" ref_strand="+" ref_description="SGN-E287765 [cLES-19-E7]">
      <seq>ttgtttagacccttccttcttcttcttcttcttcttcttctctgcattacatacaagatttttctctgttcccctcacatttcttggagtatccccactgacccagatcggattcttgcaatatttatcaagtttcctgttacccatttcagattctgttggcaattgagagtgacaacttagtaaactgttttaaggaaaaagaaaggatttttagtgcataaagatcttatctttaagtttcttttgggtaactgaaatgcaaatctgttgttaaggacagatttcatgggttcttgttttagtattgaagaagatgaatcagaaccgcgaccacataacaagccagttggccatggagttggtgcatatcccagatcaaatcctgtaattccccagaatgcaaatcttaatgctcatgaccccgaaaaggcaaacagcattgtggtgattcccaaaaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="15818" stop="13911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15518" g_stop="15170" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14326" g_stop="14211" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="465" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E287765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15518" e_stop="15170"/>
          <exon e_start="14326" e_stop="14211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAGGTTTTTTTTTCTCTTTCTCTTTTTTTTTAATTGGTGGTTTTGATAGTTTTGTTATAGAATGCAAGTTTAAATTGTTCAGTGACTATAAAGCATATATGTGTGATGGATCCATTGATTAAGATCAATTGTTGTGTAAATGGAAAATTGTGCATTGATCTGTTTTTGTTGCGAATTGTGATGCTGCTTATGGAACTTCAAAAGTATAGTGAAGTTACTCCCTCCCTTCGCTTTTACTTGTCTAGTATTGACTTGGCATACCAATGGCAATTTTACTATATCGCTCCAAGTGATAAATTATCTTGATTTTTGAAACTGGACAAGTAAAAGTGGACGAGGGAGTACTATTATTGGTATTACCGTTGTTGCTAATCTCGAAATGGTTAAGGCCCTCTGATTGCCAAATATGGAAGGTGCCAGTCTGATTGGAATTTGGATGTCAGTAACCATTTGAGAATTATCAATTAAGTAGAGCCTGTGGCTCTAAATTTCGATGGCATTGCCTCTGAACTTGAATCACAATTGCCCTAATTCTTTTGATCAGGGAAATTACTTTGACCTTTTACTTACCCGAAGACCTTGAGATGTGAAACTTCGTGGTGATTTAAAGGGTAAAACTGACAGTTTACTAAGCTGTCATTCCATCTTAGACTATAATAGCTGTTGTCTAAATGAGAATCTCTGCAAATGTCATGAATGATACTATCTGATGTAAAAAAAGAAAAGGCTTTTACAGCATTGGATCTCCTAACTGCAAAGTAATTGAGTAAAAATTGTATCTTATCTTGAAGAGAATCTAATGTGAATATGATAATTGACGGCTTCTGTTTTTTCTTTTACTTCCAGTTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTC</genome_strand>
        <mrna_strand>TTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211645" ref_strand="+" ref_description="SGN-E211645 [cLEC-67-N11]">
      <seq>gctgtggaaaggtacaaggctcgacttgtggcaaagggttatagccaacaagaggggttagattacactgagatcttctctccagtttctaagatggttactgtcaggtcggttgtggctgtggcaacagctaaacattggtctatttttcagatggatgttcataatgcttttcttcaaggggatttaatggaggaggtgtatttagaggttccttctggttttgccagccaggaggggaaacatgttgtctgcaaattacataagtctctttatggactcaaacaggcgcctaggcaatggaacaagaaactcacagatgcattggtacaacttggcttctcacaaagtcattttgactattctttattcaccaagacagttcaaggaaagctggtaattgtcttagtttatgtggatgattttcaggtaacaggaagcaatacagacttgattctacaaacaaggatgacttaaagctaaagttcaaaatgaaagatcttggagaattgaagttttttctaggaattcaatttgctagatcacaaaagggaatagtgatgagccaaaggaagtatgcattggaactaattattgagttgggattangaggaactaaactagnttacacacctttggaacaaatctgaagctacatcagttgactatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="49377" stop="50652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49677" g_stop="50352" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E211645" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49677" e_stop="50352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGGAAAGGTACAAGGCTTGACTTGTAGCTAAAGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTGCTAAGATGGTCACTGTCAGGTCAGTTGTGGCTGTGGTAGCAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAAGTGTATTTGGAGGTTCCTTCTGGTTTTGCTAGCCAGGAGGGGAATCATGTTGTCTGCAAATTACATAAGTCTTTTTATGGACTCAAACAGGCACCTAGGCAATGGAACAAGAAATTCACTGATGCATTGATACAACTTGGCTTCTCATAAAGTCATTTTGACTATTCCTTATTCACCAAGACAGTTCAAGGAGAGTTGGCAGTTGTTTTAGTTTATGTGGATGATTTGCTGGTGACAGGAAGCAGTACAGATCTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTCTTTCTTGTAATTGAATTTGTGAGATCACGAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTAGTGAGTTGGGATTGAGTGGCTCTAAACCAGTTAACACACCTTTGGAGACAAATCTGAAACTTACATCAGTTGACTATGATG</genome_strand>
        <mrna_strand>GCTGTGGAAAGGTACAAGGCTCGACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGATCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGCAACAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAATGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGCCAGGAGGGGAAACATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCGCCTAGGCAATGGAACAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAAAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTTCAGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGG-ATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTCAATTTGCTAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTATTGAGTTGGGATTANGAGGAACTAAACTAGNTTACACACCTTTGGA-ACAAATCTGAAGC-TACATCAGTTGACTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551307" ref_strand="+" ref_description="SGN-E551307 [TUS-50-P10]">
      <seq>tcgacttgtggcaaagggttatagccaacaagaggggttagattacactgagatcttctctccagtttctaagatggttactgtcaggtcggttgtggctgtggcaacagctaaacattggtctatttttcagatggatgttcataatgcttttcttcaaggggatttaatggaggaggtgtatttagaggttccttctggttttgccagccaggaggggaaacatgttgtctgcaaattacataagtctctttatggactcaaacaggcgcctaggcaatggaacaagaaactcacagatgcattggtacaacttggcttctcacaaagtcattttgactattctttattcaccaagacagttcaaggaaagctggtaattgtcttagtttatgtggatgattttcaggtaacaggaagcaatacagacttgattctacaaacaaggatgacttaaagctaaagttcaaaatgaaagatcttggagaattgaagttttttctaggaattcaatttgctagatcacaaaagggaatagtgatgagccaaaggaagtatgcattggaactaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="49399" stop="50571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49697" g_stop="50271" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E551307" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49697" e_stop="50271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTTGTAGCTAAAGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTGCTAAGATGGTCACTGTCAGGTCAGTTGTGGCTGTGGTAGCAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAAGTGTATTTGGAGGTTCCTTCTGGTTTTGCTAGCCAGGAGGGGAATCATGTTGTCTGCAAATTACATAAGTCTTTTTATGGACTCAAACAGGCACCTAGGCAATGGAACAAGAAATTCACTGATGCATTGATACAACTTGGCTTCTCATAAAGTCATTTTGACTATTCCTTATTCACCAAGACAGTTCAAGGAGAGTTGGCAGTTGTTTTAGTTTATGTGGATGATTTGCTGGTGACAGGAAGCAGTACAGATCTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTCTTTCTTGTAATTGAATTTGTGAGATCACGAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTA</genome_strand>
        <mrna_strand>TCGACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGATCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGCAACAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAATGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGCCAGGAGGGGAAACATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCGCCTAGGCAATGGAACAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAAAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTTCAGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGG-ATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTCAATTTGCTAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688557" ref_strand="+" ref_description="SGN-E688557 [t3_tus_50_p10]">
      <seq>gacttgtggcaaagggttatagccaacaagaggggttagattacactgagatcttctctccagtttctaagatggttactgtcaggtcggttgtggctgtggcaacagctaaacattggtctatttttcagatggatgttcataatgcttttcttcaaggggatttaatggaggaggtgtatttagaggttccttctggttttgccagccaggaggggaaacatgttgtctgcaaattacataagtctctttatggactcaaacaggcgcctaggcaatggaacaagaaactcacagatgcattggtacaacttggcttctcacaaagtcattttgactattctttattcaccaagacagttcaaggaaagctggtaattgtcttagtttatgtggatgattttcaggtaacaggaagcaatacagacttgattctacaaacaaggatgacttaaagctaaagttcaaaatgaaagatcttggagaattgaagttttttctaggaattcaatttgctagatcacaaaagggaatagtgatgagccaaaggaagtatgcattggaactaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="49399" stop="50571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49699" g_stop="50271" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E688557" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49699" e_stop="50271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGTAGCTAAAGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTGCTAAGATGGTCACTGTCAGGTCAGTTGTGGCTGTGGTAGCAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAAGTGTATTTGGAGGTTCCTTCTGGTTTTGCTAGCCAGGAGGGGAATCATGTTGTCTGCAAATTACATAAGTCTTTTTATGGACTCAAACAGGCACCTAGGCAATGGAACAAGAAATTCACTGATGCATTGATACAACTTGGCTTCTCATAAAGTCATTTTGACTATTCCTTATTCACCAAGACAGTTCAAGGAGAGTTGGCAGTTGTTTTAGTTTATGTGGATGATTTGCTGGTGACAGGAAGCAGTACAGATCTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTCTTTCTTGTAATTGAATTTGTGAGATCACGAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTA</genome_strand>
        <mrna_strand>GACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGATCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGCAACAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAATGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGCCAGGAGGGGAAACATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCGCCTAGGCAATGGAACAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAAAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTTCAGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGG-ATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTCAATTTGCTAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="54511" stop="53611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54211" g_stop="53911" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54211" e_stop="53911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAAGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTATCACTCGCCGTGCGCAACAATTAGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTTTCTGTATGGGCTCAAGCAAGCCCCCCATGCTTGGTACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="54937" stop="53852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54637" g_stop="54152" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54637" e_stop="54152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCACACCCACAACATCTCCAGACCGATCCGTTTTGGGTCCTTCCCGGCCACCCTTGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCGGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATACTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGAAGATGACAGTATTTCCAGGTACAAGGCTTGTTTGGTTGCTAAAGGCTACAATCAAGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716188" ref_strand="+" ref_description="SGN-E716188 [FB16BD12]">
      <seq>ctgatacacagcagcagcaacaacaacctacagctgcagatttttctcaccggaagaatggaatctgtaaccaagcatgcaattgtgattaaaatcatgggtcgtactggatccagggggcaggtgactcaggtgagagtcaagtttcttgacgaccagaacaggtttatcatgagaaatgtcaagggaccagtcagagagggtgatattctcacattgttggagtctgagagggaggccaggagattgcgctgagcccataattatgattgccatatcgagtacttgattattggctgggatttatttcctatttaatagtctttgattttgtttgcttagactctataattttgaatatgttgattttgttgcactttatgtttctggaatagtttcatgtcaaaattttgctagcattgcgtcaatggcaacaagcgatggttcttatttgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62781" stop="63833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63081" g_stop="63551" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E716188" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63081" e_stop="63551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACATAGCAGCAGCAATAACAACTTATAGCTACAAATTTTTTTCACAGGAAGAATAAAATATGTAACCAAGCATGCAATTGTGATTAAAATCATGGGCCGTACTGGATCCAGGGGGC-GGTGACTCAAGTGAGAGTCAAGTTTCTTGACGACCAGAACATGTTTATCATGAGAAATTTCAAGGGACCAGTCAGAGAGGGTGATATTATCACATTGTTGGAATCTGAGAGGAAGGCTAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGTTGGGATTTATTTCCTATATAAATAGTGTTTGATTTTATTTGCTTAGACTCTTATAAGTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTTAAAATTTTGCTAGCATTGCTTCAATGGCAACAAGTAATGGTTCTTATTAAAAAAAAAAAAAAATAT</genome_strand>
        <mrna_strand>CTGATACACAGCAGCAGCAACAACAACCTACAGCTGCAGATTTTTCTCACCGGAAGAATGGAATCTGTAACCAAGCATGCAATTGTGATTAAAATCATGGGTCGTACTGGATCCAGGGGGCAGGTGACTCAGGTGAGAGTCAAGTTTCTTGACGACCAGAACAGGTTTATCATGAGAAATGTCAAGGGACCAGTCAGAGAGGGTGATATTCTCACATTGTTGGAGTCTGAGAGGGAGGCCAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGCTGGGATTTATTTCCTAT-TTAATAGTCTTTGATTTTGTTTGCTTAGACTC-TATAATTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTCAAAATTTTGCTAGCATTGCGTCAATGGCAACAAGCGATGGTTCTTATTTGTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712836" ref_strand="+" ref_description="SGN-E712836 [FB05DH02]">
      <seq>gatacacagcagcagcaacaacaacctacagctgcagatttttctcaccggaagaatggaatctgtaaccaagcatgcaattgtgattaaaatcatgggtcgtactggatccagggggcaggtgactcaggtgagagtcaagtttcttgacgaccagaacaggtttatcatgagaaatgtcaagggaccagtcagagagggtgatattctcacattgttggagtctgagagggaggccaggagattgcgctgagcccataattatgattgccatatcgagtacttgattattggctgggatttatttcctatttaatagtctttgattttgtttgcttagactctataattttgaatatgttgattttgttgcactttatgtttctggaatagtttcatgtcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62783" stop="63789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63083" g_stop="63488" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E712836" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63083" e_stop="63488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACATAGCAGCAGCAATAACAACTTATAGCTACAAATTTTTTTCACAGGAAGAATAAAATATGTAACCAAGCATGCAATTGTGATTAAAATCATGGGCCGTACTGGATCCAGGGGGC-GGTGACTCAAGTGAGAGTCAAGTTTCTTGACGACCAGAACATGTTTATCATGAGAAATTTCAAGGGACCAGTCAGAGAGGGTGATATTATCACATTGTTGGAATCTGAGAGGAAGGCTAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGTTGGGATTTATTTCCTATATAAATAGTGTTTGATTTTATTTGCTTAGACTCTTATAAGTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTTAAA</genome_strand>
        <mrna_strand>GATACACAGCAGCAGCAACAACAACCTACAGCTGCAGATTTTTCTCACCGGAAGAATGGAATCTGTAACCAAGCATGCAATTGTGATTAAAATCATGGGTCGTACTGGATCCAGGGGGCAGGTGACTCAGGTGAGAGTCAAGTTTCTTGACGACCAGAACAGGTTTATCATGAGAAATGTCAAGGGACCAGTCAGAGAGGGTGATATTCTCACATTGTTGGAGTCTGAGAGGGAGGCCAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGCTGGGATTTATTTCCTAT-TTAATAGTCTTTGATTTTGTTTGCTTAGACTC-TATAATTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733211" ref_strand="+" ref_description="SGN-E733211 [LB04BB03]">
      <seq>cgatagcagcagcaacaacaacctacagctgcagatttttctcaccggaagaatggaatctgtaaccaagcatgcaattgtgattaaaatcatgggtcgtactggatccagggggcaggtgactcaggtgagagtcaagtttcttgacgaccagaacaggtttatcatgagaaatgtcaagggaccagtcagagagggtgatattctcacattgttggagtctgagagggaggccaggagattgcgctgagcccataattatgattgccatatcgagtacttgattattggctgggatttatttcctatttaatagtctttgattttgtttgcttagactctataattttgaatatgttgattttgttgcactttatgtttctggaatagtttcatgtcaaaattttgctagcattgcgtcaatggcaacaagcgatggttcttatttgttttcgtgtgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62788" stop="63833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63086" g_stop="63530" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="480"/>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E733211" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63086" e_stop="63530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAGCAGCAGCAATAACAACTTATAGCTACAAATTTTTTTCACAGGAAGAATAAAATATGTAACCAAGCATGCAATTGTGATTAAAATCATGGGCCGTACTGGATCCAGGGGGC-GGTGACTCAAGTGAGAGTCAAGTTTCTTGACGACCAGAACATGTTTATCATGAGAAATTTCAAGGGACCAGTCAGAGAGGGTGATATTATCACATTGTTGGAATCTGAGAGGAAGGCTAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGTTGGGATTTATTTCCTATATAAATAGTGTTTGATTTTATTTGCTTAGACTCTTATAAGTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTTAAAATTTTGCTAGCATTGCTTCAATGGCAACAAGTAATGGTTCTT</genome_strand>
        <mrna_strand>CGATAGCAGCAGCAACAACAACCTACAGCTGCAGATTTTTCTCACCGGAAGAATGGAATCTGTAACCAAGCATGCAATTGTGATTAAAATCATGGGTCGTACTGGATCCAGGGGGCAGGTGACTCAGGTGAGAGTCAAGTTTCTTGACGACCAGAACAGGTTTATCATGAGAAATGTCAAGGGACCAGTCAGAGAGGGTGATATTCTCACATTGTTGGAGTCTGAGAGGGAGGCCAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGCTGGGATTTATTTCCTAT-TTAATAGTCTTTGATTTTGTTTGCTTAGACTC-TATAATTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTCAAAATTTTGCTAGCATTGCGTCAATGGCAACAAGCGATGGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733386" ref_strand="+" ref_description="SGN-E733386 [LB04DA01]">
      <seq>cacagcagcagcaacaacaacctacagctgcagatttttctcaccggaagaatggaatctgtaaccaagcatgcaattgtgattaaaatcatgggtcgtactggatcctgggggcaggtgactcaggtgagagtcaagtttcttgacgaccagaacaggtttatcatgagaaatgtcaagggaccagtcagagagggtgatattctcacattgttggagtctgagagggaggccaggagattgcgctgagcccataattatgattgccatatcgagtacttgattattggctgggatttatttcctatttaatagtctttgattttgtttgcttagactctataattttgaatatgttgattttgttgcactttatgtttctggaatagtttcatgtcaaaattttgctagcattgcgtcaatggcaacaagcgatggttcttatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62787" stop="63850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63087" g_stop="63551" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E733386" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63087" e_stop="63551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGCAGCAGCAATAACAACTTATAGCTACAAATTTTTTTCACAGGAAGAATAAAATATGTAACCAAGCATGCAATTGTGATTAAAATCATGGGCCGTACTGGATCCAGGGGGC-GGTGACTCAAGTGAGAGTCAAGTTTCTTGACGACCAGAACATGTTTATCATGAGAAATTTCAAGGGACCAGTCAGAGAGGGTGATATTATCACATTGTTGGAATCTGAGAGGAAGGCTAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGTTGGGATTTATTTCCTATATAAATAGTGTTTGATTTTATTTGCTTAGACTCTTATAAGTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTTAAAATTTTGCTAGCATTGCTTCAATGGCAACAAGTAATGGTTCTTATTAAAAAAAAAAAAAAATAT</genome_strand>
        <mrna_strand>CACAGCAGCAGCAACAACAACCTACAGCTGCAGATTTTTCTCACCGGAAGAATGGAATCTGTAACCAAGCATGCAATTGTGATTAAAATCATGGGTCGTACTGGATCCTGGGGGCAGGTGACTCAGGTGAGAGTCAAGTTTCTTGACGACCAGAACAGGTTTATCATGAGAAATGTCAAGGGACCAGTCAGAGAGGGTGATATTCTCACATTGTTGGAGTCTGAGAGGGAGGCCAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGCTGGGATTTATTTCCTAT-TTAATAGTCTTTGATTTTGTTTGCTTAGACTC-TATAATTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTCAAAATTTTGCTAGCATTGCGTCAATGGCAACAAGCGATGGTTCTTATTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734961" ref_strand="+" ref_description="SGN-E734961 [LB14AC04]">
      <seq>cactgcagcagcaacaacaacctacagctgcagatttttctcaccggaagaatggaatctgtaaccaagcatgcaattgtgattaaaatcatgggtcgtactggatccagggggcaggtgactcaggtgagagtcaagtttcttgacgaccagaacaggtttatcatgagaaatgtcaagggaccagtcagagagggtgatattctcacattgttggagtctgagagggaggccaggagattgcgctgagcccataattatgattgccatatcgagtacttgattattggctgggatttatttcctatttaatagtctttgattttgtttgcttagactctataattttgaatatgttgattttgttgcactttatgtttctggaatagtttcatgtcaaaattttgctagcattgcgtcaatggcaacaagcgatggttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62787" stop="63841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63087" g_stop="63541" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E734961" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63087" e_stop="63541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGCAGCAGCAATAACAACTTATAGCTACAAATTTTTTTCACAGGAAGAATAAAATATGTAACCAAGCATGCAATTGTGATTAAAATCATGGGCCGTACTGGATCCAGGGGGC-GGTGACTCAAGTGAGAGTCAAGTTTCTTGACGACCAGAACATGTTTATCATGAGAAATTTCAAGGGACCAGTCAGAGAGGGTGATATTATCACATTGTTGGAATCTGAGAGGAAGGCTAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGTTGGGATTTATTTCCTATATAAATAGTGTTTGATTTTATTTGCTTAGACTCTTATAAGTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTTAAAATTTTGCTAGCATTGCTTCAATGGCAACAAGTAATGGTTCTTATTAAAAAAAA</genome_strand>
        <mrna_strand>CACTGCAGCAGCAACAACAACCTACAGCTGCAGATTTTTCTCACCGGAAGAATGGAATCTGTAACCAAGCATGCAATTGTGATTAAAATCATGGGTCGTACTGGATCCAGGGGGCAGGTGACTCAGGTGAGAGTCAAGTTTCTTGACGACCAGAACAGGTTTATCATGAGAAATGTCAAGGGACCAGTCAGAGAGGGTGATATTCTCACATTGTTGGAGTCTGAGAGGGAGGCCAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGCTGGGATTTATTTCCTAT-TTAATAGTCTTTGATTTTGTTTGCTTAGACTC-TATAATTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTCAAAATTTTGCTAGCATTGCGTCAATGGCAACAAGCGATGGTTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734230" ref_strand="+" ref_description="SGN-E734230 [LB12AE05]">
      <seq>gcagcagcaacaacaacctacagctgcagatttttctcaccggaagaatggaatctgtaaccaagcatgcaattgtgattaaaatcatgggtcgtactggatccagggggcaggtgactcaggtgagagtcaagtttcttgacgaccagaacaggtttatcatgagaaatgtcaagggaccagtcagagagggtgatattctcacattgttggagtctgagagggaggccaggagattgcgctgagcccataattatgattgccatatcgagtacttgattattggctgggatttatttcctatttaatagtctttgattttgtttgcttagactctataattttgaatatgttgattttgttgcactttatgtttctggaatagtttcatgtcaaaattttgctagcattgcgtcaatggcaacaagcgatggttcttattaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62791" stop="63850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63091" g_stop="63555" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E734230" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63091" e_stop="63555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAGCAATAACAACTTATAGCTACAAATTTTTTTCACAGGAAGAATAAAATATGTAACCAAGCATGCAATTGTGATTAAAATCATGGGCCGTACTGGATCCAGGGGGC-GGTGACTCAAGTGAGAGTCAAGTTTCTTGACGACCAGAACATGTTTATCATGAGAAATTTCAAGGGACCAGTCAGAGAGGGTGATATTATCACATTGTTGGAATCTGAGAGGAAGGCTAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGTTGGGATTTATTTCCTATATAAATAGTGTTTGATTTTATTTGCTTAGACTCTTATAAGTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTTAAAATTTTGCTAGCATTGCTTCAATGGCAACAAGTAATGGTTCTTATTAAAAAAAAAAAAAAATATGTTG</genome_strand>
        <mrna_strand>GCAGCAGCAACAACAACCTACAGCTGCAGATTTTTCTCACCGGAAGAATGGAATCTGTAACCAAGCATGCAATTGTGATTAAAATCATGGGTCGTACTGGATCCAGGGGGCAGGTGACTCAGGTGAGAGTCAAGTTTCTTGACGACCAGAACAGGTTTATCATGAGAAATGTCAAGGGACCAGTCAGAGAGGGTGATATTCTCACATTGTTGGAGTCTGAGAGGGAGGCCAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGCTGGGATTTATTTCCTAT-TTAATAGTCTTTGATTTTGTTTGCTTAGACTC-TATAATTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTCAAAATTTTGCTAGCATTGCGTCAATGGCAACAAGCGATGGTTCTTATTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334987" ref_strand="+" ref_description="SGN-E334987 [cTOE-9-H6]">
      <seq>agcaacaacaacctacagctgcagatttttctcaccggaagaatggaatctgtaaccaagcatgcaattgtgattaaaatcatgggtcgtactggatccagggggcaggtgactcaggtgagagtcaagtttcttgacgaccagaacaggtttatcatgagaaatgtcaagggaccagtcagagagggtgatattctcacattgttggagtctgagagggaggccaggagattgcgctgagcccataattatgattgccatatcgagtacttgattattggctgggatttatttcctatttaatagtctttgattttgtttgcttagactctataattttgaatatgttgattttgttgcactttatgtttctggaatagtttcatgtcaaaattttgctagcattgcgtcaatggcaacaagcgatggttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62796" stop="63840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63096" g_stop="63540" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E334987" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63096" e_stop="63540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATAACAACTTATAGCTACAAATTTTTTTCACAGGAAGAATAAAATATGTAACCAAGCATGCAATTGTGATTAAAATCATGGGCCGTACTGGATCCAGGGGGC-GGTGACTCAAGTGAGAGTCAAGTTTCTTGACGACCAGAACATGTTTATCATGAGAAATTTCAAGGGACCAGTCAGAGAGGGTGATATTATCACATTGTTGGAATCTGAGAGGAAGGCTAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGTTGGGATTTATTTCCTATATAAATAGTGTTTGATTTTATTTGCTTAGACTCTTATAAGTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTTAAAATTTTGCTAGCATTGCTTCAATGGCAACAAGTAATGGTTCTTATTAAAAAAA</genome_strand>
        <mrna_strand>AGCAACAACAACCTACAGCTGCAGATTTTTCTCACCGGAAGAATGGAATCTGTAACCAAGCATGCAATTGTGATTAAAATCATGGGTCGTACTGGATCCAGGGGGCAGGTGACTCAGGTGAGAGTCAAGTTTCTTGACGACCAGAACAGGTTTATCATGAGAAATGTCAAGGGACCAGTCAGAGAGGGTGATATTCTCACATTGTTGGAGTCTGAGAGGGAGGCCAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGCTGGGATTTATTTCCTAT-TTAATAGTCTTTGATTTTGTTTGCTTAGACTC-TATAATTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTCAAAATTTTGCTAGCATTGCGTCAATGGCAACAAGCGATGGTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335693" ref_strand="+" ref_description="SGN-E335693 [cTOE-8-G6]">
      <seq>agcaacaacaacctacagctgcagatttttctcaccggaagaatggaatctgtaaccaagcatgcaattgtgattaaaatcatgggtcgtactggatccagggggcaggtgactcangtgagagtcaagtttcttgacgaccacaacaggtttatcatgagaaatgtcaagggaccagtcagagagggtgatattctcacattgttggagtctgagagggaggccaggagattgcgctgagcccataattatgattgccatatcgagtacttgattattggctgggatttatttcctatttaatagtctttgattttgtttgcttagactctataattttgaatatgttgattttggtgcactttatgtttctggaatagtttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62796" stop="63783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63096" g_stop="63483" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E335693" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63096" e_stop="63483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATAACAACTTATAGCTACAAATTTTTTTCACAGGAAGAATAAAATATGTAACCAAGCATGCAATTGTGATTAAAATCATGGGCCGTACTGGATCCAGGGGGC-GGTGACTCAAGTGAGAGTCAAGTTTCTTGACGACCAGAACATGTTTATCATGAGAAATTTCAAGGGACCAGTCAGAGAGGGTGATATTATCACATTGTTGGAATCTGAGAGGAAGGCTAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGTTGGGATTTATTTCCTATATAAATAGTGTTTGATTTTATTTGCTTAGACTCTTATAAGTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATG</genome_strand>
        <mrna_strand>AGCAACAACAACCTACAGCTGCAGATTTTTCTCACCGGAAGAATGGAATCTGTAACCAAGCATGCAATTGTGATTAAAATCATGGGTCGTACTGGATCCAGGGGGCAGGTGACTCANGTGAGAGTCAAGTTTCTTGACGACCACAACAGGTTTATCATGAGAAATGTCAAGGGACCAGTCAGAGAGGGTGATATTCTCACATTGTTGGAGTCTGAGAGGGAGGCCAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGCTGGGATTTATTTCCTAT-TTAATAGTCTTTGATTTTGTTTGCTTAGACTC-TATAATTTTGAATATGTTGATTTTGGTGCACTTTATGTTTCTGGAATAGTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335352" ref_strand="+" ref_description="SGN-E335352 [cTOE-2-G1]">
      <seq>caacctacagctgcagatttttctcaccggaagaatggaatctgtaaccaagcatgcaattgtgattaaaatcatgggtcgtactggatccagggggcaggtgactcaggtgagagtcaagtttcttgacgaccagaacaggtttatcatgagaaatgtcaagggaccagtcagagagggtgatattctcacattgttggagtctgagagggaggccaggagattgcgctgagcccataattatgattgccatatcgagtacttgattattggctgggatttatttcctatttaatagtctttgattttgtttgcttagactctataattttgaatatgttgattttgttgcactttatgtttctggaatagtttcatgtcaaaattttgctagcattgcgtcaatggcaacaagcgatggttcttattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62804" stop="63845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63104" g_stop="63545" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E335352" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63104" e_stop="63545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTATAGCTACAAATTTTTTTCACAGGAAGAATAAAATATGTAACCAAGCATGCAATTGTGATTAAAATCATGGGCCGTACTGGATCCAGGGGGC-GGTGACTCAAGTGAGAGTCAAGTTTCTTGACGACCAGAACATGTTTATCATGAGAAATTTCAAGGGACCAGTCAGAGAGGGTGATATTATCACATTGTTGGAATCTGAGAGGAAGGCTAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGTTGGGATTTATTTCCTATATAAATAGTGTTTGATTTTATTTGCTTAGACTCTTATAAGTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTTAAAATTTTGCTAGCATTGCTTCAATGGCAACAAGTAATGGTTCTTATTAAAAAAAAAAAA</genome_strand>
        <mrna_strand>CAACCTACAGCTGCAGATTTTTCTCACCGGAAGAATGGAATCTGTAACCAAGCATGCAATTGTGATTAAAATCATGGGTCGTACTGGATCCAGGGGGCAGGTGACTCAGGTGAGAGTCAAGTTTCTTGACGACCAGAACAGGTTTATCATGAGAAATGTCAAGGGACCAGTCAGAGAGGGTGATATTCTCACATTGTTGGAGTCTGAGAGGGAGGCCAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGCTGGGATTTATTTCCTAT-TTAATAGTCTTTGATTTTGTTTGCTTAGACTC-TATAATTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTCAAAATTTTGCTAGCATTGCGTCAATGGCAACAAGCGATGGTTCTTATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234188" ref_strand="+" ref_description="SGN-E234188 [cLEL-8-F23](-)">
      <seq>atggaatctgtaaccaagcatgcaattgtgattaaaatcatgggtcgtactggatccagggggcaggtgactcaggtgagagtcaagtttcttgacgaccagaacnaggtttatcatgagaaatgtcaagggaccagtcagagagggtgatattctcacattgttggagtctgagagggaggccaggagattgcgctgagcccataattatgattgccatatcgagtacttgattattggctgggatttatttcctatttaatagtctttgattttgtttgcttagactctataattttgaatatgttgattttgttgcactttatgtttctggaatagtttcatgtcaaaattttgctagcattgcgtcaatggcaacaagcgatggttcttatttgttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="62838" stop="91829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63138" g_stop="63551" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63552" i_stop="64342" i_length="791">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="0.808" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64343" g_stop="64347" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="419" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E234188" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63138" e_stop="63551"/>
          <exon e_start="64343" e_stop="64347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATATGTAACCAAGCATGCAATTGTGATTAAAATCATGGGCCGTACTGGATCCAGGGGGC-GGTGACTCAAGTGAGAGTCAAGTTTCTTGACGACCAGAAC-ATGTTTATCATGAGAAATTTCAAGGGACCAGTCAGAGAGGGTGATATTATCACATTGTTGGAATCTGAGAGGAAGGCTAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGTTGGGATTTATTTCCTATATAAATAGTGTTTGATTTTATTTGCTTAGACTCTTATAAGTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTTAAAATTTTGCTAGCATTGCTTCAATGGCAACAAGTAATGGTTCTTATTAAAAAAAAAAAAAAATATGTTGGCAATGATTTTCTTAAAAGGATTGAAGTGCTTTACAATAAGAAAACACAAGAAATTATAGTATCTTAATTTTTTTTTACTATGAGAAAATGCAAATCATCTTAGTTTTCCAATTAAGTAATTGATGTATATCTTTGCCTGCCATGATGAAGTTCAATAGTGCATCAGGCATATACTTTGAATCTGTTTTAAGTTAGTTACAGACACTTTGAAAAGTTTCACGTAACCGATATGCTGGATCTCGCAATAATCTATGCAAATAATATCATGTGAAAGAAACCTTTGTTTAAGGTATTTTACATTTTCAAGACGTGGTTCAAGAATGCTAGAGAATCGCATCTACTTCAATTGAACTCCAGCCTAGTGGCTCCCTCATCAATCAATTGCCTTATTTCGTAGCATCCTCCGACCTCTCTGCAGTGGCTTAAGTACCTGATGATAGAAAATAATTATCAGGATCTGATTGAAGAAGTTTATTTGCAGAAATTTCAGCAAGATTCACATTAACGTGAAGTTTACTAGCACCTACACAATATTCTCCTCAAAACCACATCTGCCTCCATAGACTAAGATTTATAAACTCAAATGCTCTATTAAAATTACTAGATTAGCACAACAAATCAACAAGACATCCATAATGCTTCATTTCTGGAACCAATCCATGACGTTTTCCCATACTCTCGAAGTATTATAAACCTTTGTCCACTGAACCTGCATGAGCACAAACAAGTAATACACTAATAAAAGTACCATGAGTTAGTTTACAACCTTTTCCTAACATCTGCCAGAAGAA</genome_strand>
        <mrna_strand>ATGGAATCTGTAACCAAGCATGCAATTGTGATTAAAATCATGGGTCGTACTGGATCCAGGGGGCAGGTGACTCAGGTGAGAGTCAAGTTTCTTGACGACCAGAACNAGGTTTATCATGAGAAATGTCAAGGGACCAGTCAGAGAGGGTGATATTCTCACATTGTTGGAGTCTGAGAGGGAGGCCAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGCTGGGATTTATTTCCTAT-TTAATAGTCTTTGATTTTGTTTGCTTAGACTC-TATAATTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTCAAAATTTTGCTAGCATTGCGTCAATGGCAACAAGCGATGGTTCTTATTTGTTTTAAAAAAAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324090" ref_strand="+" ref_description="SGN-E324090 [cTOC-3-O10]">
      <seq>caaattaactcattgattaagtagaaaaaaaaatgtggaagctaaaaacagcacaaggggaaggattatggctaacaagtagcaataattatattggaaggcaacattgggaatatgatgaagaaggtggaactcttcaagaaagagctattgttgatgaaatgcgccaaaatttcacaaaaaatagattccttcataaacaaagttccgatttactcatgcgtatgcaggtaaggaaagaaaatggatgtgttgaaattggaggagaagtgaagttagaagaatcagaagatgtaagagaagaggctgtgaaaattagattgagaaaaagtataagttattactcaacaattcaagcacatgatggtcattggccggctgaatctgccggccctttattcttcctacccccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="68383" stop="69514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68683" g_stop="68912" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68913" i_stop="69029" i_length="117">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69030" g_stop="69214" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="415" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E324090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68683" e_stop="68912"/>
          <exon e_start="69030" e_stop="69214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTAACTCATTGATTAAGTAGAAAAAAAAATGTGGAAGCTAAAAACAGCACAAGGGGAAGGATTATGGCTAACAAGTAGCAATAATTATATTGGAAGGCAACATTGGGAATATGATGAAGAAGGTGGAACTCTTCAAGAAAGAGCTATTGTTGATGAAATGCGCCAAAATTTCACAAAAAATAGATTCCTTCATAAACAAAGTTCCGATTTACTCATGCGTATGCAGGTCTGCTTACTTTTACGTGTTCATTATGTTGAAAATATATGTTTATTTGTCACTTTTAACACGTCATCAAGACATACAAGAAACGTTATTGTTATTATTATTATTATTTTCATGTAGGTAAGGAAAGAAAATGGATGTGTTGAAATTGGAGGAGAAGTGAAGTTAGAAGAATCAGAAGATGTAAGAGAAGAGGCTGTGAAAATTAGATTGAGAAAAAGTATAAGTTATTACTCAACAATTCAAGCACATGATGGTCATTGGCCGGCTGAATCTGCCGGCCCTTTATTCTTCCTACCCCCTTT</genome_strand>
        <mrna_strand>CAAATTAACTCATTGATTAAGTAGAAAAAAAAATGTGGAAGCTAAAAACAGCACAAGGGGAAGGATTATGGCTAACAAGTAGCAATAATTATATTGGAAGGCAACATTGGGAATATGATGAAGAAGGTGGAACTCTTCAAGAAAGAGCTATTGTTGATGAAATGCGCCAAAATTTCACAAAAAATAGATTCCTTCATAAACAAAGTTCCGATTTACTCATGCGTATGCAG.....................................................................................................................GTAAGGAAAGAAAATGGATGTGTTGAAATTGGAGGAGAAGTGAAGTTAGAAGAATCAGAAGATGTAAGAGAAGAGGCTGTGAAAATTAGATTGAGAAAAAGTATAAGTTATTACTCAACAATTCAAGCACATGATGGTCATTGGCCGGCTGAATCTGCCGGCCCTTTATTCTTCCTACCCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336437" ref_strand="+" ref_description="SGN-E336437 [cTOE-4-A12]">
      <seq>ttaactcattgattaagtagaaaaaaaaatgtggaagctaaaaacagcacaaggggaaggattatggctaacaagtagcaataattatattggaaggcaacattgggaatatnantaagaaggtggaactcttcaagaaagagctattgttgatgaaatgcgccaaaatttcacaaaaaatagattccttcataaacaaagttccgatttactcatgcgtatgcaggtaaggaaagaaaatggatgtgttgaaattggaggagaagtgaagttagaagaatcagaagatgtaagagaagaggctgtgaaaattagattgagaaaaagtataagttattactcaacaattcaagcacatgatggtcattggccggctgaatctgccggccctttattcttcctaccccctttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="68387" stop="69517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68687" g_stop="68912" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68913" i_stop="69029" i_length="117">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69030" g_stop="69215" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="412" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E336437" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68687" e_stop="68912"/>
          <exon e_start="69030" e_stop="69215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTCATTGATTAAGTAGAAAAAAAAATGTGGAAGCTAAAAACAGCACAAGGGGAAGGATTATGGCTAACAAGTAGCAATAATTATATTGGAAGGCAACATTGGGAATATGATGAAGAAGGTGGAACTCTTCAAGAAAGAGCTATTGTTGATGAAATGCGCCAAAATTTCACAAAAAATAGATTCCTTCATAAACAAAGTTCCGATTTACTCATGCGTATGCAGGTCTGCTTACTTTTACGTGTTCATTATGTTGAAAATATATGTTTATTTGTCACTTTTAACACGTCATCAAGACATACAAGAAACGTTATTGTTATTATTATTATTATTTTCATGTAGGTAAGGAAAGAAAATGGATGTGTTGAAATTGGAGGAGAAGTGAAGTTAGAAGAATCAGAAGATGTAAGAGAAGAGGCTGTGAAAATTAGATTGAGAAAAAGTATAAGTTATTACTCAACAATTCAAGCACATGATGGTCATTGGCCGGCTGAATCTGCCGGCCCTTTATTCTTCCTACCCCCTTTG</genome_strand>
        <mrna_strand>TTAACTCATTGATTAAGTAGAAAAAAAAATGTGGAAGCTAAAAACAGCACAAGGGGAAGGATTATGGCTAACAAGTAGCAATAATTATATTGGAAGGCAACATTGGGAATATNANTAAGAAGGTGGAACTCTTCAAGAAAGAGCTATTGTTGATGAAATGCGCCAAAATTTCACAAAAAATAGATTCCTTCATAAACAAAGTTCCGATTTACTCATGCGTATGCAG.....................................................................................................................GTAAGGAAAGAAAATGGATGTGTTGAAATTGGAGGAGAAGTGAAGTTAGAAGAATCAGAAGATGTAAGAGAAGAGGCTGTGAAAATTAGATTGAGAAAAAGTATAAGTTATTACTCAACAATTCAAGCACATGATGGTCATTGGCCGGCTGAATCTGCCGGCCCTTTATTCTTCCTACCCCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740879" ref_strand="+" ref_description="SGN-E740879 [LC23BB06]">
      <seq>cgataaaaaaatgtggaagctaaaaacagcacaaggggaaggattatggctaacaagtagcaataattatattggaaggcaacattgggaatatgatgaagaaggtggaactcttcaagaaagagctattgttgatgaaatgcgccaaaatttcacaaaaaatagattccttcataaacaaagttccgatttactcatgcgtatgcaggtaaggaaagaaaatggatgtgttgaaattggaggagaagtgaagttagaagaatcagaagatgtaagagaagaggctgtgaaaattagattgagaaaaagtataagttattactcaacaattcaagcacatgatggtcattggccggctgaatctgccggccctttattcttcctaccccctttggtgatggcattgtatgtgactggagatatgaatgttgttttgtcaccagctcatcaaatggagattaaacgctacacttacaatcatcaggtcttattctacatataataatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="68406" stop="70241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68705" g_stop="68912" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68913" i_stop="69029" i_length="117">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69030" g_stop="69215" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="394" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69216" i_stop="69827" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69828" g_stop="69941" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="508" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E740879" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68705" e_stop="68912"/>
          <exon e_start="69030" e_stop="69215"/>
          <exon e_start="69828" e_stop="69941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAAAATGTGGAAGCTAAAAACAGCACAAGGGGAAGGATTATGGCTAACAAGTAGCAATAATTATATTGGAAGGCAACATTGGGAATATGATGAAGAAGGTGGAACTCTTCAAGAAAGAGCTATTGTTGATGAAATGCGCCAAAATTTCACAAAAAATAGATTCCTTCATAAACAAAGTTCCGATTTACTCATGCGTATGCAGGTCTGCTTACTTTTACGTGTTCATTATGTTGAAAATATATGTTTATTTGTCACTTTTAACACGTCATCAAGACATACAAGAAACGTTATTGTTATTATTATTATTATTTTCATGTAGGTAAGGAAAGAAAATGGATGTGTTGAAATTGGAGGAGAAGTGAAGTTAGAAGAATCAGAAGATGTAAGAGAAGAGGCTGTGAAAATTAGATTGAGAAAAAGTATAAGTTATTACTCAACAATTCAAGCACATGATGGTCATTGGCCGGCTGAATCTGCCGGCCCTTTATTCTTCCTACCCCCTTTGGTAATAATTAATTACTATATATACTACTTTTTTATAAATATTTACTACTTAGGACCTATCAAAAGTCATTTTCGTGACAAAAATATTTTACTAGTTTTCGTTTGTTTTATGTTTTTTTTATTATTTTAAAATTATTTTTCTAGAAAATATACGACTCATTCAGCTAGCTAGTGATATTGTTTGTTTTGAGTGTAAGCTCATACAAGTTTAAAACAAAGTTATTAGGATGTAAGATATGCTTACTTATATACACAATATTTTTTCATGTGTTTTATCGTAAGTTTGAGTGTTGAGGTTTACCCCCACCGCATGAGATTTGTTAGACATTTCCCCCTCTTTCTTGGGATTTGTCTATTCACTTGAATTACAACTCATACTGACAAGGCTGACACATCTTTAAAACGTGTTTAGTGGGTAAGACTTGCTTACTTAATACTTATATATCCATATGCCATGTATTTTGGGTGTCACGTATTGAAAAGAAGGATAAATATGAAAAAAGGTCCGAACAACATAATTCTCTTCAACAATTCACTTAATATAGACGTGAGGAATATTAGTCGGAGCTACTTACAAATTTTCAGTCGTAGTAACACGTACTTAATTGTGAAGGTGATGGCATTGTATGTGACTGGAGATATGAATGTTGTTTTGTCACCAGCTCATCAAATGGAGATTAAACGCTACACTTACAATCATCAGGTCTTATTCTACATATAATAATAT</genome_strand>
        <mrna_strand>CGATAAAAAAATGTGGAAGCTAAAAACAGCACAAGGGGAAGGATTATGGCTAACAAGTAGCAATAATTATATTGGAAGGCAACATTGGGAATATGATGAAGAAGGTGGAACTCTTCAAGAAAGAGCTATTGTTGATGAAATGCGCCAAAATTTCACAAAAAATAGATTCCTTCATAAACAAAGTTCCGATTTACTCATGCGTATGCAG.....................................................................................................................GTAAGGAAAGAAAATGGATGTGTTGAAATTGGAGGAGAAGTGAAGTTAGAAGAATCAGAAGATGTAAGAGAAGAGGCTGTGAAAATTAGATTGAGAAAAAGTATAAGTTATTACTCAACAATTCAAGCACATGATGGTCATTGGCCGGCTGAATCTGCCGGCCCTTTATTCTTCCTACCCCCTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGCATTGTATGTGACTGGAGATATGAATGTTGTTTTGTCACCAGCTCATCAAATGGAGATTAAACGCTACACTTACAATCATCAGGTCTTATTCTACATATAATAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738155" ref_strand="+" ref_description="SGN-E738155 [LC12CD04]">
      <seq>gaaataaaaatgtggaagctaaaaacagcacaaggggaaggattatggctaacaagtagcaataattatattggaaggcaacattgggaatatgatgaagaaggtggaactcttcaagaaagagctattgttgatgaaatgcgccaaaatttcacaaaaaatagattccttcataaacaaagttccgatttactcatgcgtatgcaggtaaggaaagaaaatggatgtgttgaaattggaggagaagtgaagttagaagaatcagaagatgtaagagaagaggctgtgaaaattagattgagaaaaagtataagttattactcaacaattcaagcacatgatggtcattggccggctgaatctgccggccctttattcttcctaccccctttggtgatggcattgtatgtgactggagatatgaatgttgttttgtcaccagctcatcaaatggagattaaacgctacacttacaatcatcaggtcttattctacatataataatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="68406" stop="70241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68706" g_stop="68912" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68913" i_stop="69029" i_length="117">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69030" g_stop="69215" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="393" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69216" i_stop="69827" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69828" g_stop="69941" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="507" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E738155" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68706" e_stop="68912"/>
          <exon e_start="69030" e_stop="69215"/>
          <exon e_start="69828" e_stop="69941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAAAATGTGGAAGCTAAAAACAGCACAAGGGGAAGGATTATGGCTAACAAGTAGCAATAATTATATTGGAAGGCAACATTGGGAATATGATGAAGAAGGTGGAACTCTTCAAGAAAGAGCTATTGTTGATGAAATGCGCCAAAATTTCACAAAAAATAGATTCCTTCATAAACAAAGTTCCGATTTACTCATGCGTATGCAGGTCTGCTTACTTTTACGTGTTCATTATGTTGAAAATATATGTTTATTTGTCACTTTTAACACGTCATCAAGACATACAAGAAACGTTATTGTTATTATTATTATTATTTTCATGTAGGTAAGGAAAGAAAATGGATGTGTTGAAATTGGAGGAGAAGTGAAGTTAGAAGAATCAGAAGATGTAAGAGAAGAGGCTGTGAAAATTAGATTGAGAAAAAGTATAAGTTATTACTCAACAATTCAAGCACATGATGGTCATTGGCCGGCTGAATCTGCCGGCCCTTTATTCTTCCTACCCCCTTTGGTAATAATTAATTACTATATATACTACTTTTTTATAAATATTTACTACTTAGGACCTATCAAAAGTCATTTTCGTGACAAAAATATTTTACTAGTTTTCGTTTGTTTTATGTTTTTTTTATTATTTTAAAATTATTTTTCTAGAAAATATACGACTCATTCAGCTAGCTAGTGATATTGTTTGTTTTGAGTGTAAGCTCATACAAGTTTAAAACAAAGTTATTAGGATGTAAGATATGCTTACTTATATACACAATATTTTTTCATGTGTTTTATCGTAAGTTTGAGTGTTGAGGTTTACCCCCACCGCATGAGATTTGTTAGACATTTCCCCCTCTTTCTTGGGATTTGTCTATTCACTTGAATTACAACTCATACTGACAAGGCTGACACATCTTTAAAACGTGTTTAGTGGGTAAGACTTGCTTACTTAATACTTATATATCCATATGCCATGTATTTTGGGTGTCACGTATTGAAAAGAAGGATAAATATGAAAAAAGGTCCGAACAACATAATTCTCTTCAACAATTCACTTAATATAGACGTGAGGAATATTAGTCGGAGCTACTTACAAATTTTCAGTCGTAGTAACACGTACTTAATTGTGAAGGTGATGGCATTGTATGTGACTGGAGATATGAATGTTGTTTTGTCACCAGCTCATCAAATGGAGATTAAACGCTACACTTACAATCATCAGGTCTTATTCTACATATAATAATAT</genome_strand>
        <mrna_strand>GAAATAAAAATGTGGAAGCTAAAAACAGCACAAGGGGAAGGATTATGGCTAACAAGTAGCAATAATTATATTGGAAGGCAACATTGGGAATATGATGAAGAAGGTGGAACTCTTCAAGAAAGAGCTATTGTTGATGAAATGCGCCAAAATTTCACAAAAAATAGATTCCTTCATAAACAAAGTTCCGATTTACTCATGCGTATGCAG.....................................................................................................................GTAAGGAAAGAAAATGGATGTGTTGAAATTGGAGGAGAAGTGAAGTTAGAAGAATCAGAAGATGTAAGAGAAGAGGCTGTGAAAATTAGATTGAGAAAAAGTATAAGTTATTACTCAACAATTCAAGCACATGATGGTCATTGGCCGGCTGAATCTGCCGGCCCTTTATTCTTCCTACCCCCTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGCATTGTATGTGACTGGAGATATGAATGTTGTTTTGTCACCAGCTCATCAAATGGAGATTAAACGCTACACTTACAATCATCAGGTCTTATTCTACATATAATAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325992" ref_strand="+" ref_description="SGN-E325992 [cTOD-1-E9]">
      <seq>agatggccatttaacaagttgagagaaaaggctttgaaagttgccatggaacatattcactacgaggaccaaactagtagatacatttgcattggatgtgttgaaaaggttttatgtcttatggcttgttgggtggaagatccaaattcagaagcatataaacgccaccttgctcgattaccagattattattggatatctgaagatggtttaaaatttcagtcctttggttgtcaaacttgggatgcagtattttcaatccaagcaattttatcaagtgatgtggctgaagaatttgggccaacactcaaaaaggcaaataattttctaaaagcatcacaggtgagggagaatcctagtggggactttaaaaaaatgtataggcacatatctaaaggtggttggccattttccatgcaagatcatggttggcaagtctcagattgcacttctgaaggattaaagtgtgcactcttattttcacaaatgcctacacaacttgttggggaaaaactcgatgttgagcgcttatatgatgcagtaaatgttattttatctctccagagcgaaaatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="70909" stop="75313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71209" g_stop="71316" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71317" i_stop="73845" i_length="2529">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73846" g_stop="73959" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="222" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73960" i_stop="74081" i_length="122">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74082" g_stop="74201" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="342" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74202" i_stop="74299" i_length="98">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74300" g_stop="74422" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="465" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74423" i_stop="74906" i_length="484">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74907" g_stop="75005" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="564" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75006" i_stop="75209" i_length="204">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75210" g_stop="75222" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="577" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E325992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71209" e_stop="71316"/>
          <exon e_start="73846" e_stop="73959"/>
          <exon e_start="74082" e_stop="74201"/>
          <exon e_start="74300" e_stop="74422"/>
          <exon e_start="74907" e_stop="75005"/>
          <exon e_start="75210" e_stop="75222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGCCATTTAACAAGTTGAGAGAAAAGGCTTTGAAAGTTGCCATGGAACATATTCACTACGAGGACCAAACTAGTAGATACATTTGCATTGGATGTGTTGAAAAGGTATGCCTCTAACTTACTAAATTCATTCCTTCAATTTGTGGCGATGTTTCACTTAGTACCGAGTTTAAGAAAAAAATAAGTAAGAAATTAAAATTTTGTAATATAAAATAAGTTTTAGATATATAAAACTTGTTTCGATTCAATGATTTGGAATTTTCTACAAGAAGTTTAATTTTGTTCAGAAGGAAACACTTGCTCTTCTTGAAATTGTCACGACCCAAATCCGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATATAATATCAACAGAAAGTAATGCGGAAGACTTAAACTCATTAATAAAATCAATAACTATTATTATCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACGATCAAACGACTAAACTAAGATTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAACATTAGCTCACCCTGAATTTCCGGTGTAGTGAAGACTGACTTGAATTATTGTTGAGTTGAAGACGACGGCACGTTTGCTGCACTCCACAAATAACAAAGAAGAAAACATAAAAGTAGGGGGTCAGTACAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAGTCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTATGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCTGATTCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTCCTTCCATCAATTCATCAAGCCTTCTTTCTTACCAAGGCATCATCAATCTCATTACTTTAGGTCATCAAGCCTTCTCCCTTACCAAGGCATCATCATTAAAAAGAGATTAGGTTTTTATCAAGATTTGGGATTCAATAACTTCATCATGCTTAATATAATTACAATTATATAATCACGTTCATGCATGCATACAATTAAGCACATAGCAGGGTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTTCCTCCACTGAAGATTCGTGATCAAGCAAGCAATTTCCCAAGCTTTGTGTTTTTCCTCTCGTTCGATCCTCTCTCTCGTTCAACTTTCTCTCTCTTTCTCTTGTTCTTTCTATTTTCTTTATTCAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATGCCCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTAAAACGTATCAAGAAATCCGACCCAGACTGGGATTGCGCAACCTGTGACGGGTTGTCGTGCAGGTCGTCGCAAAGTTCAGAGACCCAAATTTCCACCAAGGGTCTGTGACAGTCCGTCACACCTGTGACGGTCCGTCCTGCCATTTCGTTACAAAGTTCAGAGAGTCGATTTCAGCACCCAAATTTTAGAATTTGTAAGTGTTTTGGGACGAGACACCCTCGACGGTCCGTTGTGCCCATGACGTTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACATGTCGTATTTATCTTTCGGCTATTACAACATTACAATCAGCTTCTTATTGACTTACTATAGTGATTAAAGGCAAAATAAATTTTAAACATATTTGTAATATTTGGATTAAATAAAAAGTATTTTTAAGTTAAAAAGATAAAATTAAGCCTAAAGTCATAAGCTCATCCAAATATCATATTTCCTCGGTCTCGTTATAAGTGTCATTAGGCAAAATTATACTTATTAAGAAATCAATAAAAAAAATGTTTTTTAATAAACATTTCTCGAAAATTGAATACTATTAAAAAGGAGTATAAGGCTATAATTGAAAGGAAAAAAACTTACTTTTCCTAATTAGCTTCGAAACATAATTAACATAATAAAATTTATATTACAACCGTGTTAAATTAACATAATAAAAATATAATAATTGCTTTGTTAGGTTTTATGTCTTATGGCTTGTTGGGTGGAAGATCCAAATTCAGAAGCATATAAACGCCACCTTGCTCGATTACCAGATTATTATTGGATATCTGAAGATGGTTTAAAATTTCAGGTTATTTTTTCATATATATATCCTTTCGATTTTTTCCATGAATCTAATATAGATATCGAATCCTGAACGACAAAATTAAATAATTAGCTAATTAAAATTAGTACAATATGGTTTGCATGCAGTCCTTTGGTTGTCAAACTTGGGATGCAGTATTTTCAATCCAAGCAATTTTATCAAGTGATGTGGCTGAAGAATTTGGGCCAACACTCAAAAAGGCAAATAATTTTCTAAAAGCATCACAGGTTATATAAATAATTATTCCTTATTCATAGAAATAAATTAGGATAAAATGTTACATCTGAAAAAATAATAATTTATTTTGAATTACGACTATTATTAGGTGAGGGAGAATCCTAGTGGGGACTTTAAAAAAATGTATAGGCACATATCTAAAGGTGGTTGGCCATTTTCCATGCAAGATCATGGTTGGCAAGTCTCAGATTGCACTTCTGAAGGATTAAAGGTAATTCTTCGTATCACGATAAAAGAGATATTTAGTGATAATAATTTTTTTATTGTTATAGTAGTTAAGTCAACTATTGTATTCAGAATTGCTAAATTATTTAGCGATATTCATATCAAATGTTAATTATAAATACCTGACACTAATATTATTGCAATTAGTTGTTATATAGCGACGACGATTATATTATTATCGATACATTCTTTTATTTGTTATGTTATAATATATGATGAGGCCTAACCGTCAATAAAGTTAAACAAAAATCAAGGGATATTAGGGTTCAAATTCTTAGCAAATGGCAAAAATGTTAGTGTTCCTTCCATTTCAATTCATGTATTGTAATTTTTCTTTCAATTGGTAACTAAAAATAATGATATATTTAAATTTTTAAAATAATTTATAAACTTTCTACTTTTATTTTATTTTTCGTTTGTGTTTTAGCTACTTAAATATTATAAGACGTTGTGTGCAATTATTTTTTCAGTGTGCACTCTTATTTTCACAAATGCCTACACAACTTGTTGGGGAAAAACTCGATGTTGAGCGCTTATATGATGCAGTAAATGTTATTTTATCTCTCCAGGTAAAAATAAATCTTGATTTAGTGATATATTATGATGGATGATTAAATTGTTTTGAACATATTTAGTTTAATTTGTAAGCAAGAAACTATAATTTATATGCTTTCTTGGTAATATATTTAGTTCATGATCAAATAATTTAATGTGCTACGTACTTTAATTAAAACCGTTCTTGCTATTATTAATTGTAAATTTTAATAATGTAGAGCGAAAATGGGG</genome_strand>
        <mrna_strand>AGATGGCCATTTAACAAGTTGAGAGAAAAGGCTTTGAAAGTTGCCATGGAACATATTCACTACGAGGACCAAACTAGTAGATACATTTGCATTGGATGTGTTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATGTCTTATGGCTTGTTGGGTGGAAGATCCAAATTCAGAAGCATATAAACGCCACCTTGCTCGATTACCAGATTATTATTGGATATCTGAAGATGGTTTAAAATTTCAG..........................................................................................................................TCCTTTGGTTGTCAAACTTGGGATGCAGTATTTTCAATCCAAGCAATTTTATCAAGTGATGTGGCTGAAGAATTTGGGCCAACACTCAAAAAGGCAAATAATTTTCTAAAAGCATCACAG..................................................................................................GTGAGGGAGAATCCTAGTGGGGACTTTAAAAAAATGTATAGGCACATATCTAAAGGTGGTTGGCCATTTTCCATGCAAGATCATGGTTGGCAAGTCTCAGATTGCACTTCTGAAGGATTAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCACTCTTATTTTCACAAATGCCTACACAACTTGTTGGGGAAAAACTCGATGTTGAGCGCTTATATGATGCAGTAAATGTTATTTTATCTCTCCAG............................................................................................................................................................................................................AGCGAAAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="-" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>agtccaagctagaagcattagctcaccctgaatttccgatgtagtaagactggcttgaattactgttgagttgaacacgatggcacgtttgctgcactccacaaataaacaagaagagaacataaaagtaggggtcagtacaaaacacgggtactgagtagatatcatcggccaactcaaaatagaaatcaatatatataccaagtaatatcataaaatcaactatgatactcaacatgtagcaacaacaaatactatatcattaacaattaccgtcaagttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagattgagtatattaacatctttcaagattcattatctttatttctcttgtgtcggtacgtgacactccgctccctcaatattcattaatcctcttgtgtcggtacgtgacactccgatcccctaaatctatatgtcggtttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="71517" stop="72676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71817" g_stop="72252" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72253" i_stop="72334" i_length="82">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72335" g_stop="72376" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="481" r_length="43" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71817" e_stop="72252"/>
          <exon e_start="72335" e_stop="72376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCAAGCTAGAAACATTAGCTCACCCTGAATTTCCGGTGTAGTGAAGACTGACTTGAATTATTGTTGAGTTGAAGACGACGGCACGTTTGCTGCACTCCACAAATAACAAAGAAGAAAACATAAAAGTAGGGGGTCAGTAC-AAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAAC-A-ATATATACCAAGTAATATCATAAAGTCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACAC-CCGATCCCCTAAATCTATGTGTCGGTTCGTG</genome_strand>
        <mrna_strand>AGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGT-AAGACTGGCTTGAATTACTGTTGAGTTGAACACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAGAACATAAAAGTA-GGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCG..................................................................................GTACGTGACACTCCGATCCCCTAAATCTATATGTCGGTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="-" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>atcaacaaatactatatcattaacaattaccgtcaagttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagattgagtatattaacatctttcaagattcattatctttatttctcttgtgtcggtacgtgacactccgctccctcaatattcattaatcctcttgtgtcggtacgtgacactccgatcccctaaatctatatgtcggtttgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="71761" stop="72677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72059" g_stop="72252" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72253" i_stop="72334" i_length="82">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72335" g_stop="72377" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="239" r_length="44" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72059" e_stop="72252"/>
          <exon e_start="72335" e_stop="72377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACAC-CCGATCCCCTAAATCTATGTGTCGGTTCGTGA</genome_strand>
        <mrna_strand>ATCAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCG..................................................................................GTACGTGACACTCCGATCCCCTAAATCTATATGTCGGTTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="110331" stop="72134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72834" g_stop="72433" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72834" e_stop="72433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTTCAGTGGAGGAAGGTTATGGTTT-TCATGC--T-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTAATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGACCTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGAATCAGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGA-TTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGATTAAGGG-ATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326732" ref_strand="+" ref_description="SGN-E326732 [cTOC-25-E13]">
      <seq>ttgggtggaagatccaaattcagaagcatataaacgccaccttgctcgattaccagattattattggatatctgaagatggtttaaaatttcagtcctttggttgtcaaacttgggatgcagtattttcaatccaagcaattttatcaagtgatgtggctgaagaatttgggccaacactcaaaaaggcaaataattttctaaaagcatcacaggtgagggagaatcctagtggggactttaaaaaaatgtataggcacatatctaaaggtggttggccattttccatgcaagatcatggttggcaagtctcagattgcacttctgaaggattaaagtgtgcactcttattttcacaaatgcctacacaacttgttggggaaaaactcgatgttgagcgcttatatgatgcagtaaatgttattttatctctccagagcgaaaatgggggttttccagcttgggagcctcaacatgcctatcgttggttggagaaatttaatccaactgaattttttgaggataccataattgaacgagagtatgtggaatgcacttcatcatcaatccaagctttatcattatttaaaaagttgcaccctggacatagaaggaaggaaattgatgttgcaattacaaaaggtttgcaatacattgaaaatacacaaaatcccgatggctcttggacgggttgttggggaatttgttatacatatggaacatggtttgctgtggatggattatagcttgtggaagaccctatctactagtcatgcccttcaaaagcttgtcaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="73566" stop="76271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73866" g_stop="73959" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73960" i_stop="74081" i_length="122">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74082" g_stop="74201" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="214" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74202" i_stop="74299" i_length="98">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74300" g_stop="74422" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="337" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74423" i_stop="74906" i_length="484">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74907" g_stop="75005" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="436" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75006" i_stop="75209" i_length="204">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75210" g_stop="75266" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="493" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75267" i_stop="75449" i_length="183">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75450" g_stop="75496" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="540" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75497" i_stop="75616" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75617" g_stop="75760" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="684" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75761" i_stop="75855" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="75856" g_stop="75971" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="797" r_length="113" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E326732" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73866" e_stop="73959"/>
          <exon e_start="74082" e_stop="74201"/>
          <exon e_start="74300" e_stop="74422"/>
          <exon e_start="74907" e_stop="75005"/>
          <exon e_start="75210" e_stop="75266"/>
          <exon e_start="75450" e_stop="75496"/>
          <exon e_start="75617" e_stop="75760"/>
          <exon e_start="75856" e_stop="75971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTGGAAGATCCAAATTCAGAAGCATATAAACGCCACCTTGCTCGATTACCAGATTATTATTGGATATCTGAAGATGGTTTAAAATTTCAGGTTATTTTTTCATATATATATCCTTTCGATTTTTTCCATGAATCTAATATAGATATCGAATCCTGAACGACAAAATTAAATAATTAGCTAATTAAAATTAGTACAATATGGTTTGCATGCAGTCCTTTGGTTGTCAAACTTGGGATGCAGTATTTTCAATCCAAGCAATTTTATCAAGTGATGTGGCTGAAGAATTTGGGCCAACACTCAAAAAGGCAAATAATTTTCTAAAAGCATCACAGGTTATATAAATAATTATTCCTTATTCATAGAAATAAATTAGGATAAAATGTTACATCTGAAAAAATAATAATTTATTTTGAATTACGACTATTATTAGGTGAGGGAGAATCCTAGTGGGGACTTTAAAAAAATGTATAGGCACATATCTAAAGGTGGTTGGCCATTTTCCATGCAAGATCATGGTTGGCAAGTCTCAGATTGCACTTCTGAAGGATTAAAGGTAATTCTTCGTATCACGATAAAAGAGATATTTAGTGATAATAATTTTTTTATTGTTATAGTAGTTAAGTCAACTATTGTATTCAGAATTGCTAAATTATTTAGCGATATTCATATCAAATGTTAATTATAAATACCTGACACTAATATTATTGCAATTAGTTGTTATATAGCGACGACGATTATATTATTATCGATACATTCTTTTATTTGTTATGTTATAATATATGATGAGGCCTAACCGTCAATAAAGTTAAACAAAAATCAAGGGATATTAGGGTTCAAATTCTTAGCAAATGGCAAAAATGTTAGTGTTCCTTCCATTTCAATTCATGTATTGTAATTTTTCTTTCAATTGGTAACTAAAAATAATGATATATTTAAATTTTTAAAATAATTTATAAACTTTCTACTTTTATTTTATTTTTCGTTTGTGTTTTAGCTACTTAAATATTATAAGACGTTGTGTGCAATTATTTTTTCAGTGTGCACTCTTATTTTCACAAATGCCTACACAACTTGTTGGGGAAAAACTCGATGTTGAGCGCTTATATGATGCAGTAAATGTTATTTTATCTCTCCAGGTAAAAATAAATCTTGATTTAGTGATATATTATGATGGATGATTAAATTGTTTTGAACATATTTAGTTTAATTTGTAAGCAAGAAACTATAATTTATATGCTTTCTTGGTAATATATTTAGTTCATGATCAAATAATTTAATGTGCTACGTACTTTAATTAAAACCGTTCTTGCTATTATTAATTGTAAATTTTAATAATGTAGAGCGAAAATGGGGGTTTTCCAGCTTGGGAGCCTCAACATGCCTATCGTTGGTTGGAGGTAACATACTCAAAATCCTTTTTTAATTACTATCGTGTGTTAAACTATATGAATATCTTTGTATATAACTTAAATTCTGTTTGGATTCCCAAACTCATATATATTTTTCTTATAGGTGTTAGTTGTTTAGTTTTGTATGTTAAATTTATTTGATTAACTATTTAACCTTTTTTTCCTTGTCAGAAATTTAATCCAACTGAATTTTTTGAGGATACCATAATTGAACGAGAGTAAGTACTCTATCCTACTTTTTTCTTTTAAAATTCTACATTTATTAGAAAATATTAAATATACATTCAACAATATTTTAATTATAAGATTAATATATGTTAATTAATGAATATATGAAGGTATGTGGAATGCACTTCATCATCAATCCAAGCTTTATCATTATTTAAAAAGTTGCACCCTGGACATAGAAGGAAGGAAATTGATGTTGCAATTACAAAAGGTTTGCAATACATTGAAAATACACAAAATCCCGATGGCTCTTGGTAAATATATATCCTTCGTCAAAAAAAAAATTATATTACTGATGAATTTTTAGATATATTTAATAAAATTTCTAATTTTGCTGCTGCTCATATAGGACGGGTTGTTGGGGAATTTGTTATACATATGGAACATGGTTTGCTGTGGATGGATTAATAGCTTGTGGAAGAACCTATTCTACTAGTCATGCCCTTCAAAAAGCTTGTCAATTTT</genome_strand>
        <mrna_strand>TTGGGTGGAAGATCCAAATTCAGAAGCATATAAACGCCACCTTGCTCGATTACCAGATTATTATTGGATATCTGAAGATGGTTTAAAATTTCAG..........................................................................................................................TCCTTTGGTTGTCAAACTTGGGATGCAGTATTTTCAATCCAAGCAATTTTATCAAGTGATGTGGCTGAAGAATTTGGGCCAACACTCAAAAAGGCAAATAATTTTCTAAAAGCATCACAG..................................................................................................GTGAGGGAGAATCCTAGTGGGGACTTTAAAAAAATGTATAGGCACATATCTAAAGGTGGTTGGCCATTTTCCATGCAAGATCATGGTTGGCAAGTCTCAGATTGCACTTCTGAAGGATTAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCACTCTTATTTTCACAAATGCCTACACAACTTGTTGGGGAAAAACTCGATGTTGAGCGCTTATATGATGCAGTAAATGTTATTTTATCTCTCCAG............................................................................................................................................................................................................AGCGAAAATGGGGGTTTTCCAGCTTGGGAGCCTCAACATGCCTATCGTTGGTTGGAG.......................................................................................................................................................................................AAATTTAATCCAACTGAATTTTTTGAGGATACCATAATTGAACGAGA........................................................................................................................GTATGTGGAATGCACTTCATCATCAATCCAAGCTTTATCATTATTTAAAAAGTTGCACCCTGGACATAGAAGGAAGGAAATTGATGTTGCAATTACAAAAGGTTTGCAATACATTGAAAATACACAAAATCCCGATGGCTCTTG...............................................................................................GACGGGTTGTTGGGGAATTTGTTATACATATGGAACATGGTTTGCTGTGGATGGATT-ATAGCTTGTGGAAGACCCTA-TCTACTAGTCATGCCCTTC-AAAAGCTTGTCAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367598" ref_strand="+" ref_description="SGN-E367598 [cLPT-14-A13]">
      <seq>tttgggccaacactcaaaaaagcaaataattttctaaaagcatcacaggtgagggagaatcctagtggggactttaaaaaaatgtataggcacatatctaaaggtggttggccattttccatgcaagatcatgggtggcaagtatcagattgttcttctgaaggatcaaagcgtgcactcttattttcacaaatgcgctacgcaactaggtggagaaaaattctatgctgagcgcttatatgatgcagtaaatgttattttatgtctccagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="73854" stop="75305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74154" g_stop="74201" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74202" i_stop="74299" i_length="98">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74300" g_stop="74422" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="171" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74423" i_stop="74906" i_length="484">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.859" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74907" g_stop="75005" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="271" r_length="100" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E367598" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74154" e_stop="74201"/>
          <exon e_start="74300" e_stop="74422"/>
          <exon e_start="74907" e_stop="75005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGCCAACACTCAAAAAGGCAAATAATTTTCTAAAAGCATCACAGGTTATATAAATAATTATTCCTTATTCATAGAAATAAATTAGGATAAAATGTTACATCTGAAAAAATAATAATTTATTTTGAATTACGACTATTATTAGGTGAGGGAGAATCCTAGTGGGGACTTTAAAAAAATGTATAGGCACATATCTAAAGGTGGTTGGCCATTTTCCATGCAAGATCATGGTTGGCAAGTCTCAGATTGCACTTCTGAAGGATTAAAGGTAATTCTTCGTATCACGATAAAAGAGATATTTAGTGATAATAATTTTTTTATTGTTATAGTAGTTAAGTCAACTATTGTATTCAGAATTGCTAAATTATTTAGCGATATTCATATCAAATGTTAATTATAAATACCTGACACTAATATTATTGCAATTAGTTGTTATATAGCGACGACGATTATATTATTATCGATACATTCTTTTATTTGTTATGTTATAATATATGATGAGGCCTAACCGTCAATAAAGTTAAACAAAAATCAAGGGATATTAGGGTTCAAATTCTTAGCAAATGGCAAAAATGTTAGTGTTCCTTCCATTTCAATTCATGTATTGTAATTTTTCTTTCAATTGGTAACTAAAAATAATGATATATTTAAATTTTTAAAATAATTTATAAACTTTCTACTTTTATTTTATTTTTCGTTTGTGTTTTAGCTACTTAAATATTATAAGACGTTGTGTGCAATTATTTTTTCAGTGTGCACTCTTATTTTCACAAATGC-CTACACAACTTGTTGGGGAAAAACTCGATGTTGAGCGCTTATATGATGCAGTAAATGTTATTTTATCTCTCCAG</genome_strand>
        <mrna_strand>TTTGGGCCAACACTCAAAAAAGCAAATAATTTTCTAAAAGCATCACAG..................................................................................................GTGAGGGAGAATCCTAGTGGGGACTTTAAAAAAATGTATAGGCACATATCTAAAGGTGGTTGGCCATTTTCCATGCAAGATCATGGGTGGCAAGTATCAGATTGTTCTTCTGAAGGATCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCACTCTTATTTTCACAAATGCGCTACGCAACTAGGTGGAGAAAAATTCTATGCTGAGCGCTTATATGATGCAGTAAATGTTATTTTATGTCTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257717" ref_strand="+" ref_description="SGN-E257717 [cLEG-39-H11]">
      <seq>cacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaggtaaagaatacactctgtactggctgtatgaggaacttatccacctgatttctggcacgctgctgtgttggtcgtaaaatcgtaatgcttgcttctattggacctggaattggtctagagactactgcgagtcaagtcgtaaaattcattagaaatgttgtgtattagctttccttaacacttttgcggcttgagtttccaaatagttaatacttaatggttggatgtattctttctgcaaatggttcgtcaagtaaggtttttgaatttgattggnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="80127" stop="3497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79827" g_stop="79368" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79367" i_stop="79315" i_length="53">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79314" g_stop="79306" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="469" r_length="9" r_score="0.889"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79305" i_stop="76578" i_length="2728">
            <donor d_prob="0.484" d_score="0.00"/>
            <acceptor a_prob="0.382" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76577" g_stop="76544" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="503" r_length="34" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E257717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79827" e_stop="79368"/>
          <exon e_start="79314" e_stop="79306"/>
          <exon e_start="76577" e_stop="76544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAATTACTCGTGCCTTTTCTTTTCAGTGGAAAAAAGTGAAATTTCTTCATGGCCAAATAATGTTGGTATTATTCAACTCTATGATTATTTAAATGTGTACTAAGTTCATTGATACATACAATGTTACTAATTTATCAACATAAAGTTGATATTTTAACTTTAAAGCATAAAAAATGTAATACTTCATATAGCTTCCACGAGGTCAAAGCTAAAACCAATTGCCAAAAGACGAAATATATTTTGTGATCCACCTCTTTTTAGCAAAGATGAAAATACAGAAAAGAAAATATAGAAGTACATTTATTTAGTATACATATTGAATTAGTAAAATAAAAATTTTCTAGTTGAGTTTGTTGAGAAGACGTTTGTGATATTGTGCAAGAGCCCATATTGGGAATATATTTCTGTATGATGCATAGTTTAAGGTGCAATTCTTCATGAATGCCCCTGTCACTCCCTGCACAACAATTATAACAAAATAAATATCATAAATGTTAAAATTATCATTTTTAAGGCAACTAATTGTTACCTGTTGTGGATAGTCACCATCTTCCATTTGTGAATTCATTAACAATCTTATTCCACAATGTATTGGTGATGGATCAATTTCTCCCTAACGAACAACAACAGAAAAAAAACAAAAAACAAAGAGAGAGTTAGGACCGTTGAAACGATATATTATATTCTTTAGTTAACTAATTTTTTTTTCATCCAGTGTCCGGTGCCCACGTTAGAGCCTCACTAAATTTGGATTCACGTCGGAAAGTCCCACATTGAGAGGGTAAAATGCTTCTTAATAAAGGCAACTCAGTACCCAGGGGGACTTGGACCCGAGACTCTAGTTGAGGATGAATGAGTACTCATTCACTCCACCACAATTCTTGTCGATCATTGGTCAATTAAATCTGGATTCACGCTGGAAAGTCCCACATTGAGGGGGTAAAACACTCCATAATAAAGGAAATTTTGTACCCAAGGGGAACTTGAATTCGAAACCTCTAGTTAAGGATAAATGAGTACTTTATCACTCTACCATAATTCTTGTTGATCTTTTGATCAACTAGTTTATCAATAAAGCCTTATTATATACAAAATATATATACTATCAATGTGTTTGTCACATAAATATGCTATATTATAAAAATATTTACCATTTATTTCAATATAATTTTTCTAACTAAATACAAGATTTTTTGGAATTAAGAAAATTGTACGGTTTTCGCCTCTTTCTCAAGCCTTTTTCCTATTCTTCTTTTTATTCTTATGCTTCTTTGACTCTTTCTTTCTTTCTTTCTTTTTACTCTGCTGCTTCTTCGCCTCTTTCTTCTTCTTTTTTTACTCTTTTAATTTTTTGTCTCTTTCACTGGTGTTATTTATCTTCCTCCTCTTTTTTTTTTTTTTAATTCTTGTTCTTTTTTAAAACTTTTTATCTAAATAATAATATTCCTCAAATCAGTTATTTTTCATGTCACTATTTTTATTCAAAAATAAGATGAAAAGAGGAACAAAAAGATAGCAAATTTGTATAAAATTACGTTTTTAAGTAGAAATTTCAAATCTTTGAAATTACAAAAGTAAGAGTTCACCATTGATGATCATTATAAAGCTTTGTGATAAGTTTGAGTAGGTAGTTCCTACAAATGATTGAAAATGTCGTTTGGAGTTTATATCTCAATTTTAAGAGGGTTTGGTTAAGTTTAAAATTGATTTTAGGAATAATATTAGATTGAAATGAATTAAATATAATATTAAAATGGTCTTGCAACTGTATTAAAGTTGAATTAGATAATACAATTTTAATGCAAATTTAATTCATTTTGAAGTTTTTTGATTGATTTGTTACTATTGGATACTTGTTTAATCCATTATTGATATAACTTATCAATTTATTGATCATGGTCATATCTTTCGTTAGTTACGTTTTCTATTCATTCTTAATTCTCTTTTCTAATTCAACTTTAAATATTGTGTAGTACAATTTTAATGCAAATTTAATTCATTTTACAACCTTTTGATTTATTGTTACTATCAGATACTTGTTTAATTCATTATTGATACAAGTTTAATTCACTCTACAAATCATTGTCTTGTCAGTCATAGTTATGTTTTCCATTTATTCTTAATTCTCTCTTCTTATTCAAATTTAATACCATCTAATACAATTTTAATACAAATTTAATTCATTTTGCAGTTTTTTATTCATTTTTTTATTCCTATTGGATACTTGTTTGATTGATTATGAATATAAGTTTAATTCACTTTATAAATCGCTGTCTAATATTTTTATTCATTACATTTTTTTATTCATGTTTAATTCTCTCTTCTACCTCAACGTTAATACTTGTGTAATACACTTTTGTATTTTTAATTCACTTTGCGATTAATCAATTGATTTGTTACGATCGGTTACTTGTTTAATTTATTATTCATACAAGTTTTATTCAGTTTACATGCAGATCAAAGAATGCTCTTTTGTTTTCTACATTCTGCATTCATATTTAATTATCTTCTAATAATTCAACTTTAATATGTTTGTAATACATTCTTAATTCAAGTTTAATTCATTTTACAGTTTCTTATGCCTCTTCATTTGTTATGATTATATTACTTCTCTTCTAATAATTCAACTTTACATTTTAATTAAAGTTTAATTCATGTTGCAGTTTTTATGCCTCTTCATTTGTTACGATTATATTACTTGTCTAATTAACTATTAATACAAGTTTTGTTCAATCTAGAATCATTGACTATTCTACAAAAAAGAGAGGGAGAAAAAGCAAAAAAAAAAAAAAGGAGA</genome_strand>
        <mrna_strand>CACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGAT.....................................................TGGNAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552266" ref_strand="+" ref_description="SGN-E552266 [cTSB-3-F9]">
      <seq>atgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaggtaaagaatacactctgtactggctgtatgaggaacttatccacctgatttctggcacgctgctgtgttggtcgtaaaatcgtaatgcttgcttctattggacctggaattggtctagagactactgcgagtcaagtcgtaaaattcattagaaatgttgtgtattagctttccttaacacttttgcggcttgagtttccaaatagttaatacttaatggttggatgtattctttctgcaaatggttcgtcaagtaaggtttttgaatttgattgaagatatattgtcttcaaaattggagaaaaaaannaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88023" stop="3494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87723" g_stop="87694" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="136" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="143" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="228" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79851" g_stop="79338" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="742" r_length="514" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79337" i_stop="76578" i_length="2760">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76577" g_stop="76549" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="771" r_length="29" r_score="0.724"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E552266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87723" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79338"/>
          <exon e_start="76577" e_stop="76549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAATTACTCGTGCCTTTTCTTTTCAGTGGAAAAAAGTGAAATTTCTTCATGGCCAAATAATGTTGGTATTATTCAACTCTATGATTATTTAAATGTGTACTAAGTTCATTGATACATACAATGTTACTAATTTATCAACATAAAGTTGATATTTTAACTTTAAAGCATAAAAAATGTAATACTTCATATAGCTTCCACGAGGTCAAAGCTAAAACCAATTGCCAAAAGACGAAATATATTTTGTGATCCACCTCTTTTTAGCAAAGATGAAAATACAGAAAAGAAAATATAGAAGTACATTTATTTAGTATACATATTGAATTAGTAAAATAAAAATTTTCTAGTTGAGTTTGTTGAGAAGACGTTTGTGATATTGTGCAAGAGCCCATATTGGGAATATATTTCTGTATGATGCATAGTTTAAGGTGCAATTCTTCATGAATGCCCCTGTCACTCCCTGCACAACAATTATAACAAAATAAATATCATAAATGTTAAAATTATCATTTTTAAGGCAACTAATTGTTACCTGTTGTGGATAGTCACCATCTTCCATTTGTGAATTCATTAACAATCTTATTCCACAATGTATTGGTGATGGATCAATTTCTCCCTAACGAACAACAACAGAAAAAAAACAAAAAACAAAGAGAGAGTTAGGACCGTTGAAACGATATATTATATTCTTTAGTTAACTAATTTTTTTTTCATCCAGTGTCCGGTGCCCACGTTAGAGCCTCACTAAATTTGGATTCACGTCGGAAAGTCCCACATTGAGAGGGTAAAATGCTTCTTAATAAAGGCAACTCAGTACCCAGGGGGACTTGGACCCGAGACTCTAGTTGAGGATGAATGAGTACTCATTCACTCCACCACAATTCTTGTCGATCATTGGTCAATTAAATCTGGATTCACGCTGGAAAGTCCCACATTGAGGGGGTAAAACACTCCATAATAAAGGAAATTTTGTACCCAAGGGGAACTTGAATTCGAAACCTCTAGTTAAGGATAAATGAGTACTTTATCACTCTACCATAATTCTTGTTGATCTTTTGATCAACTAGTTTATCAATAAAGCCTTATTATATACAAAATATATATACTATCAATGTGTTTGTCACATAAATATGCTATATTATAAAAATATTTACCATTTATTTCAATATAATTTTTCTAACTAAATACAAGATTTTTTGGAATTAAGAAAATTGTACGGTTTTCGCCTCTTTCTCAAGCCTTTTTCCTATTCTTCTTTTTATTCTTATGCTTCTTTGACTCTTTCTTTCTTTCTTTCTTTTTACTCTGCTGCTTCTTCGCCTCTTTCTTCTTCTTTTTTTACTCTTTTAATTTTTTGTCTCTTTCACTGGTGTTATTTATCTTCCTCCTCTTTTTTTTTTTTTTAATTCTTGTTCTTTTTTAAAACTTTTTATCTAAATAATAATATTCCTCAAATCAGTTATTTTTCATGTCACTATTTTTATTCAAAAATAAGATGAAAAGAGGAACAAAAAGATAGCAAATTTGTATAAAATTACGTTTTTAAGTAGAAATTTCAAATCTTTGAAATTACAAAAGTAAGAGTTCACCATTGATGATCATTATAAAGCTTTGTGATAAGTTTGAGTAGGTAGTTCCTACAAATGATTGAAAATGTCGTTTGGAGTTTATATCTCAATTTTAAGAGGGTTTGGTTAAGTTTAAAATTGATTTTAGGAATAATATTAGATTGAAATGAATTAAATATAATATTAAAATGGTCTTGCAACTGTATTAAAGTTGAATTAGATAATACAATTTTAATGCAAATTTAATTCATTTTGAAGTTTTTTGATTGATTTGTTACTATTGGATACTTGTTTAATCCATTATTGATATAACTTATCAATTTATTGATCATGGTCATATCTTTCGTTAGTTACGTTTTCTATTCATTCTTAATTCTCTTTTCTAATTCAACTTTAAATATTGTGTAGTACAATTTTAATGCAAATTTAATTCATTTTACAACCTTTTGATTTATTGTTACTATCAGATACTTGTTTAATTCATTATTGATACAAGTTTAATTCACTCTACAAATCATTGTCTTGTCAGTCATAGTTATGTTTTCCATTTATTCTTAATTCTCTCTTCTTATTCAAATTTAATACCATCTAATACAATTTTAATACAAATTTAATTCATTTTGCAGTTTTTTATTCATTTTTTTATTCCTATTGGATACTTGTTTGATTGATTATGAATATAAGTTTAATTCACTTTATAAATCGCTGTCTAATATTTTTATTCATTACATTTTTTTATTCATGTTTAATTCTCTCTTCTACCTCAACGTTAATACTTGTGTAATACACTTTTGTATTTTTAATTCACTTTGCGATTAATCAATTGATTTGTTACGATCGGTTACTTGTTTAATTTATTATTCATACAAGTTTTATTCAGTTTACATGCAGATCAAAGAATGCTCTTTTGTTTTCTACATTCTGCATTCATATTTAATTATCTTCTAATAATTCAACTTTAATATGTTTGTAATACATTCTTAATTCAAGTTTAATTCATTTTACAGTTTCTTATGCCTCTTCATTTGTTATGATTATATTACTTCTCTTCTAATAATTCAACTTTACATTTTAATTAAAGTTTAATTCATGTTGCAGTTTTTATGCCTCTTCATTTGTTACGATTATATTACTTGTCTAATTAACTATTAATACAAGTTTTGTTCAATCTAGAATCATTGACTATTCTACAAAAAAGAGAGGGAGAAAAAGCAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>ATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAANNAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411043" ref_strand="-" ref_description="SGN-E411043 [STM-14-C17]">
      <seq>ttttgtatcgcacttaggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttatgaaaattcagggtcgaatgatagagactcccgggaaatgaagcaggttcaaccccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgataccaatacatacaaagccataggaagaacgtttgtcttagagccaaaggctgtgttaatgaatgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataatcttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcatagattttctgcttctgaagtttgttttgtcaactctttccttggaagaaaaaaaaagatagcttctcaaagattttctggaacttcaaattctaggtaaagaatacattgtgtactggctgtatgaggaacttatccacctgatttctggcacttcaactattgctgctgtgttggtcgtaaatcgtaatgcttgcttctattggacctggagttggtctagagactgctgcgggtgaagttgcaattcattagaaatgttgtgtattagctaccttagcaattttgtgggcttgaatttccaaataattaaggaaacaagtggttggatgcatctttctgtttgcagactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88191" stop="79131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87891" g_stop="87835" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="110" r_length="53" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="216" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="223" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="308" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79432" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="731" r_length="423" r_score="0.883"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79431" i_stop="79315" i_length="117">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79314" g_stop="79306" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="740" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="772" polyA_stop="781"/>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E411043" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411043" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87891" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79432"/>
          <exon e_start="79314" e_stop="79306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTATCTGCACTT-GGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGG-----C-AC----GCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTG-CGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAATTACTCGTGCCTTTTCTTTTCAGTGGAAAAAA</genome_strand>
        <mrna_strand>TTTTGTATC-GCACTTAGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATGAAAATTCAGGGTCGAATGATAGAGACTCCCGGGAAA-TGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAACCCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGATACCAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................GTTTGTCTTAGAGCCAAAGGCTGTGTTAATGAATGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAATCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCATAGAT-T-TTCTGCTTCTGAAGTTTGTTTTGTCAACTCTTTCCTTGGAAG-AAAAAAAAA-GATAGCTTCTCAAAGATTTTCTGGAACTTCAAATTCTAGGTAAAGAATACATTGTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACTTCAACTATTGCTGCTGTGTTGGTCGT-AAATCGTAATGCTTGCTTCTATTGGACCTGGAGTTGGTCTAGAGACTGCTGCGGGTGAAGT--TGCAATTCATTAGAAATGTTGTGTATTAGC-TACCTTAGCAATTTTGTGGGCTTGAATTTCCAAATAATTA.....................................................................................................................AGGAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554289" ref_strand="+" ref_description="SGN-E554289 [cTSC-3-N12]">
      <seq>gtttttgtatctgcacttggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttattgaaattcagggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaggtaaagaatacactctgtactggctgtatgaggaacttatccacctgatttctggcacgctgctgtgttggtcgtaaaatcgtaatgcttgcttctattggacctggaattggtctagagactactgcgagtcaagtcgtaaaattcattagaaatgttgtgtattagctttccttaacacttttgcggcttgagtttccaaatagttaatacttaatggttggatgtattctttctgcaaatggttcgtcaagtaaggtttttgaatttgattgaaaatatattgtcttcaaaattggagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88193" stop="79038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87893" g_stop="87835" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="113" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="219" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="226" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="311" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79331" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="832" r_length="521" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E554289" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87893" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAATTACTCG</genome_strand>
        <mrna_strand>GTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAAATATATTGTCTTCAAAATTGGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343454" ref_strand="+" ref_description="SGN-E343454 [cTOF-19-N23]">
      <seq>gaaagtagaattatattctagggcttcagtttttgtatctgcacttggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttattgaaattcagggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtaaagaatacactctgtactggctgtatgaggaacttatccacctgatttctggcacgctgctgtgttggtcgtaaaatcgtaatgcttgcttctattggacctggaattggtctagagactactgcgagtcaagtcgtaaaattcattagaaatgttgtgtattagctttccttaacacttttgcggcttgagtttccaaatagttaatacttaatggttggatgtattctttctgcaaatggttcgtcaagtaaggtttttgaatttgattgaagatatattgtcttcaaaattggagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88221" stop="79038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87921" g_stop="87835" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="141" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="247" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="254" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="339" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79751" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="440" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79750" i_stop="79641" i_length="110">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79640" g_stop="79333" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="748" r_length="308" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E343454" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87921" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79751"/>
          <exon e_start="79640" e_stop="79333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAATTACT</genome_strand>
        <mrna_strand>GAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCAT..............................................................................................................GTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368809" ref_strand="+" ref_description="SGN-E368809 [TUS-26-I3](-)">
      <seq>aaaaaaaaaaaaaaaaaaaaanctcgagactagttcccaactgcttttattaaattcagggtcgaatgatagagactaccggtaaattgaaccaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaggtaaagaatacactctgtactggctgtatgaggaacttatccacctgatttctggcacgctgctgtgttggtcgtaaaatcgtaatgcttgcttctattggacctggaattggtctagagactactgcgagtcaagtcgtaaaattcattagaaatgttgtgtattagctttccttaacacttttgcggcttgagtttccaaatagttaatacttaatggttggatgtattctttctgcaaatggttcgtcaagtaaggtttttgaatttgattgaagatatattgtcttcaaaattggagaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88047" stop="79035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="95" r_length="53" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="201" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="208" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="293" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79851" g_stop="79335" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="810" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="811" polyA_stop="821"/>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E368809" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAATTA</genome_strand>
        <mrna_strand>GCTTTTATT-AAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAACCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552452" ref_strand="+" ref_description="SGN-E552452 [cTSB-3-P17]">
      <seq>atgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaggtaaagaatacactctgtactggctgtatgaggaacttatccacctgatttctggcacgctgctgtgttggtcgtaaaatcgtaatgcttgcttctattggacctggaattggtctagagactactgcgagtcaagtcgtaaaattcattagaaatgttgtgtattagctttccttaacacttttgcggcttgagtttccaaatagttaatacttaatggttggatgtattctttctgcaaatggttcgtcaagtaaggtttttgaatttgattgaagatatattgtcttcaaaattggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88023" stop="79038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87723" g_stop="87694" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="136" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="143" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="228" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79851" g_stop="79337" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="743" r_length="515" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E552452" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87723" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAAT</genome_strand>
        <mrna_strand>ATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357498" ref_strand="+" ref_description="SGN-E357498 [cTOS-23-I10]">
      <seq>tcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaggtaaagaatacactctgtactggctgtatgaggaacttatccacctgatttctggcacgctgctgtgttggtcgtaaaatcgtaatgcttgcttctattggacctggaattggtctagagactactgcgagtcaagtcgtaaaattcattagaaatgttgtgtattagctttccttaacacttttgcggcttgagtttccaaatagttaatacttaatggttggatgtattctttctgcaaatggttcgtcaagtaaggtttttgaatttgattgaagatatattgtcttcaaaattggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="80074" stop="79039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79774" g_stop="79339" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E357498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79774" e_stop="79339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGA</genome_strand>
        <mrna_strand>TCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347073" ref_strand="+" ref_description="SGN-E347073 [cTOF-25-B24]">
      <seq>gaaagtagaattatattctagggcttcagtttttgtatctgcacttggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttattgaaattcagggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtaaagaatacactctgtactggctgtatgaggaacttatccacctgatttctggcacgctgctgtgttggtcgtaaaatcgtaatgcttgcttctattggacctggaattggtctagagactactgcgagtcaagtcgtaaaattcattagaaatgttgtgtattagctttccttaacacttttgcggcttgagtttccaaatagttaatacttaatggttggatgtattctttctgcaaatggttcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88221" stop="79090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87921" g_stop="87835" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="141" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="247" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="254" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="339" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79751" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="440" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79750" i_stop="79641" i_length="110">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79640" g_stop="79390" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="691" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E347073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87921" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79751"/>
          <exon e_start="79640" e_stop="79390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTC</genome_strand>
        <mrna_strand>GAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCAT..............................................................................................................GTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326775" ref_strand="+" ref_description="SGN-E326775 [cTOC-25-E22]">
      <seq>tagaattatattctagggcttcagtttttgtatctgcacttggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttattgaaattcagggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaggtaaagaatacactctgtactggctgtatgaggaacttatccacctgatttctggcacgctgctgtgttggtcgtaaaatcgtaatgcttgcttctattggacctggaattggtctagagactactgcgagtcaagtcgtaaaattcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88216" stop="79191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87916" g_stop="87835" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="136" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="242" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="249" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="334" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79491" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="695" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E326775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87916" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATT</genome_strand>
        <mrna_strand>TAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306676" ref_strand="+" ref_description="SGN-E306676 [cLEY-19-G1]">
      <seq>aaaaatggcggacgaagcaaatagaactgcttttattgaaattcagggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaggtaaagaatacactctgtactggctgtatgaggaacttatccacctgatttctggcacgctgctgtgttggtcgtaaaatcgtaatgcttgcttctattggacctggaattggtctagagactactgcgagtcaagtcgtaaaattcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88162" stop="79191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87862" g_stop="87835" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="82" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="188" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="195" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="280" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79491" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="641" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E306676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87862" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATT</genome_strand>
        <mrna_strand>AAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310670" ref_strand="+" ref_description="SGN-E310670 [cLEZ-19-L8]">
      <seq>aagtagaattatattctagggcttcagtttttgtatctgcacttggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttattgaaattcagggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcagaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaggtaaagaatacactctgtactggctgtatgaggaacttatccacctgatttctggcacgctgctgtgttggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88219" stop="79267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87919" g_stop="87835" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="139" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="245" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="252" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="337" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79567" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="622" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E310670" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87919" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCG</genome_strand>
        <mrna_strand>AAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAGAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411042" ref_strand="+" ref_description="SGN-E411042 [STM-14-C17]">
      <seq>atattctagggcttcagtttttgtatctgcacttaggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttattgaaattcagggtcgaatgatagagactaccgggaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgataccaatacatacaaagccataggaagaacgtttgtcttagagccaaaggctgtgttaatgaatgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataatcttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcatagattttctgcttctgaagtttgttttgtcaactctttccttggaagaaaaaaaaagatagcttctcaaagattttctggaacttcaaattctaggtaaagaatacattgtgtactggctgtatgaggaacttatccacctgatttctggcacttcaactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88209" stop="79283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87909" g_stop="87835" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="130" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="236" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="243" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="328" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79572" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="603" r_length="275" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E411042" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87909" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCTAGGGCTTCAGTTTTTGTATCTGCACTT-GGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTT</genome_strand>
        <mrna_strand>ATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTAGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGGAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGATACCAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................GTTTGTCTTAGAGCCAAAGGCTGTGTTAATGAATGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAATCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCATAGAT-T-TTCTGCTTCTGAAGTTTGTTTTGTCAACTCTTTCCTTGGAAG-AAAAAAAAA-GATAGCTTCTCAAAGATTTTCTGGAACTTCAAATTCTAGGTAAAGAATACATTGTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCAC-TTCAACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326557" ref_strand="+" ref_description="SGN-E326557 [cTOC-17-N13]">
      <seq>tagaattatattctagggcttcagtttttgtatctgcacttggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttattgaaattcagggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaagtaaagaatacactctgtactggctgtatgaggaacttatccacctgatttctggcacgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88216" stop="79277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87916" g_stop="87835" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="136" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="242" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="249" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="334" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79577" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="609" r_length="275" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E326557" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87916" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCT</genome_strand>
        <mrna_strand>TAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAAGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291367" ref_strand="+" ref_description="SGN-E291367 [cLET-2-L13]">
      <seq>gaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacgtaagttttgaactgaagtctatcgtgttgctgttatctgaaaaaaggaaaaggatatgtgcatcatatacattattgacctggaattttcaaatttttctacttttgtacttatctcactcagaacaatcttttatgtgcagatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaggtaaagaatacactctgtactggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="87636" stop="79316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87336" g_stop="87291" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84891" g_stop="84657" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="281" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79851" g_stop="79616" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="517" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E291367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87336" e_stop="87291"/>
          <exon e_start="84891" e_stop="84657"/>
          <exon e_start="79851" e_stop="79616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCT</genome_strand>
        <mrna_strand>GAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238169" ref_strand="+" ref_description="SGN-E238169 [cLED-22-C23]">
      <seq>gcttttattgaaattcagggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttagggagctcttgcaacaagatcctggtcttgctcgtcagataatgaccatgtctgtagcgtagatatcttctgcttctgaagttccttttgtcaactctttccttggaagaaaaaaaaaacgatagcttctcaaagattttttggaacttcaaattctaggtaaagaatacactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88047" stop="79325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="160" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="167" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="252" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79851" g_stop="79625" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="479" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E238169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCT</genome_strand>
        <mrna_strand>GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336949" ref_strand="+" ref_description="SGN-E336949 [cTOE-5-E14]">
      <seq>tcactcgcctgttttcagaaagtagaattatattctagggcttcagtttttgtatctgcacttggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttattgaaattcagggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttanggagctcttgcaacaagatcctggtcttgctcgtcagataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88238" stop="79455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87938" g_stop="87835" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="158" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="264" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="271" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="356" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79755" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="453" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E336949" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87938" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCGCCTGTTTTCAGAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGA</genome_strand>
        <mrna_strand>TCACTCGCCTGTTTTCAGAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTANGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317616" ref_strand="+" ref_description="SGN-E317616 [cTOB-8-E4]">
      <seq>ttctcactcgcctgttttcagaaagtagaattatattctagggcttcagtttttgtatctgcacttggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttattgaaattcagggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatgtgtcttagagccaaaggctgtgttaatgaacgagctagagcaaaaactcaaggatggtgaaactgcaattgcctgtttgcagacttctaaagagtatttggaaaagcacatggcggaggtggagaataaccttacggagctcttgcaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88241" stop="79482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87941" g_stop="87835" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="161" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="267" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="274" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="359" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.356" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79782" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="429" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E317616" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87941" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCACTCGCCTGTTTTCAGAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAG</genome_strand>
        <mrna_strand>TTCTCACTCGCCTGTTTTCAGAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATGTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCTAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTGTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTACGGAGCTCTTGCAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294743" ref_strand="-" ref_description="SGN-E294743 [cLET-17-K19](-)">
      <seq>aaagtagaattatattctagggcttcagtttttgtatctgcacttggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttattgaaattcagggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88220" stop="79522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87920" g_stop="87835" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="140" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="246" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="253" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="338" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79822" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="368" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E294743" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294743" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87920" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATG</genome_strand>
        <mrna_strand>AAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294742" ref_strand="+" ref_description="SGN-E294742 [cLET-17-K19]">
      <seq>aaagtagaattatattctagggcttcagtttttgtatctgcacttggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttattgaaattcagggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgcaattgcctctttgcagacttctaaagagtatttggaaaagcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88220" stop="79522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87920" g_stop="87835" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="140" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="246" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="253" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84657" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="338" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.356" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79822" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="368" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E294742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87920" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84657"/>
          <exon e_start="79851" e_stop="79822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAGGTGTTCTCAAATTTCTTTTTTCATTCAGCATTTTGCTACTCACTTTCATACCAATCCTTTCTTCTTCTTCATAGTTATAAAAGTTACTTCTGAATGACAAAATCAATATAGTAATTAAATAGAGATGTCTCAAGTTTATAAAGTTTTCAAGTCTCAATTTTTGGTCTTAGGCTTAGATTAATGTTTTCTTCTTACAAACGAATCTTGACGTTTTGCTGTTAACACAACATATCAAAAAGTGTTCCTATGGTGCACCCAAGGGTGTTTCCTAGTTGTCAAGGAAGTGTTTGAGACCCATGAAGTTTCAGGTTCAAATCCAAGCGGATACAAAAACAGATTCTTTCCATTTGCCTTAGCCTTGGTGGACAGAGTTACCTGGTACCTATTGCTAGTAGGAGGTGATAGGTATTCCGTGGAATTAGTCAAGGTGCGTGAAAACTTGCCCAGACACCATGATCATAAAAAAGTGTTCCTATGGTCAAAGAACATTATTGGAACAGAAAGGTCCATTCTACATCTCAAACCTCATTACTAGACATTAACTACCTTCCTTCAGTTCTGCAGATAGGAACTTCCTGCTTCTTCTGTAGCTTGCCTCTTCCTCACTTTTCATTTACCTACTTTTCACACATTTCTAGTCTCCATATTTAGCATATGGTCCCTTGGGAGAACTAAATGCTTTATGCTGTTAAATGAACTGTAGTTGCCACCTTTACCTAACTACAATTGTTAACGTGGTACATTCATTCTACTCTATTTTATGTATATCTTAAACCTCATTACTGGACATCAACTTCCTTCCTTTAGTTCTGCAGATAGGAACTTCCTACTTCGTCTGTAGCTTGCCTCTTCCTCACCTTTCATTACCTACTTTTCACACATTTCTAGTCTCCATGTTTAGCATATGGTCCCTTGGGAGAAACTAAATGCTTTATGCTGTTGAACGAACTGTAGTTGCCACCTTTACCTCAACATTCATTCTACTCTATTAATGTATAGAAGAAAAAGAGGAAGAAATTAAAGGATCTTAAACCCGCAGCCCTGGTTGCTGAAACTTAGTTCCAACAGCATTTTCTTGGGTATTCGTTGGAACACCATATAGTTTTTGGCCAAAAGCATCCCTAAACTATACCCTCAACTTTAACTACATCCTTAAATTATCCTTCTCAACAGAAAACATCCCCAAGTATTTAAAAAGTAACCACTTTTATCCTTTTGTTAAAATAATTAATGGATTTTACACAAAAATATGTGCAGGTCACAGTGCTCTCAGTAAAACTTTTCCCACATAATTTCATTATCCGTTGGAAAAATCCCCCCTCCCAAAAAATAAATAAATAAATTTTTTGAGACCCTTATTTCCTAACAACTGTTGAGTGGCTTTGAAGATTTAGCAGGAATGAAGTAGTAGTTTGGATTAAAATAGTTGAAGTTATCTATGGTAGCAGACAAGGCTGGAATCCCCCTTCAAATATTTTATACACTAGATGGGGAGTATGGAAAGGGATTTGTATATGATGGGCCGAGTTTAAACAATTGACCATATTGGAGGTGGGAAATGGAGCAAAAAATAGATTTTGGAGTTTGGACTGACTTATGGACTGGTGATGAGTGCTTGAAACACATATTTCCTCTCTTTTCAGTTGTTGCAATAATTAAGATGGAGTTATGGCTGATTTTTATTTAAACACTAGATGGCAATTTTAGAAGGAATCTGAATGATAGTGAAATTGGGGACTTTTGTCAATTATTCCTTCAACTGGATTATACCTACATTGATCAAAGTAAGGGAGATTCACTAGTATGGATAGCTAATAAAGATCTTTTCAGTAAAAAGTGTTAGGTCTTCTAATGAAGCAAACAGGATACTGGGATACTAGTTGGCCATGGAAAGGGATTTGGAGAACTAAAGGTCCTATAAAGGTAGCTTGCTTTGGTTGGATTGCAGCATGAGGAGCTTGCCTTACTCGGGATAATCTTCAGAAAAAGGGTTTTGCACTAAGTAATAGATGTTACTTATGTGAAGAAGAGTTGGAGACTGTGAGCACCTTATGCATTGCAGAATAGCTAGACAATGTTGGGAATTTTTCTTCAGTATTTGCAGGATCTCTTGGATCATGCCTCAGATTGTGAAGGAATTATTGGAGAGTTGGCAGCACCAAGGAATGCATAAAGCTTTGAAGCCATTTTGGAGAACTATACCTTTGTGCATATTGTGGACTATTTGGCTAGAAAGAAATAACACTTGTTTTGATGGGCAAAAAGACCATATTTCTAGAGTTTAAAATTAGTGTTTACATAATTTTTTTGTTGGTGTAAAAGTAATTCCATTGATAATATAGATCAATATATGGAGTTTTGGGAGTTGCTAGGGAAATGTTGTAACTGACTGTGTATGGATATTCCCTGCAGTCTTTTGTAACTTTTGATTTTGGTACCTTCTTGATACTTGGTCAATAAACCTTTACCTTACCAAAAGAAAAGCTGTTGAGATCTTTTCATAAAGAATATTAGGAGTAATTGCCTTCCTTATGTTGTGATTAAACGACTCTATGCTATTGCGTAGGTTATTTGAGGGGCTCTTGGGATGATTCAATGAAAAAGTGAATCATATACATTGCAGTAGACAATATGATATCAAAGGAGAGAAAAGGGGAGAAGGGATTGTGCACTAGATTTGAAAGGGTTAGAAACTCATTACATGGATCAGTTCAACTCATGAATTTATATTGCATCAACCGACTTGGAGATCTAATAACTTACTGAGAATCAAATAGACCTAGGGAGTATGTTTTGACTTGACGGTAGACCAGGGGCAGATGTACTGGGTGCGGGTTCCCGGTAACCCACAACTTTTATGCAGACCTGTATTTATATAGAGAAATCTAATAAATATATTTAATTCCGGAATTATTCACTATGTGGATAAAATATCTATATGTACTTATATTATAAACATAAGTATATATGCATTAAGTACGTGCAGTAGATACATAGTGTCTAGTAGTAGTCACTTGGTTCAGCTGTAGTGAAGGAACCCCCTTAAGCTTAGTTGGCCCTTTTTTTTTGAGAAGGCTTAGTTGGCCTTTTGTATTGGGTGTGATCCCCCTTTGGCACATAAAAAGAAGTTCCTTTTTTTACTTGAGATTTTTGAGAACCCATAAACTTCAAATCCTAGATCTGCCTCTCTGGTAGACCATGTATTTGTTGGTAGTATGCTTAGATTCTTGTAGGATATCTACTTTTACTTATCCAAACAAAAAACAAAAAGAAGAGATTCTAGCAATATACCTGACCAGTGTCTGAGGCTCTATTGCATTCTAACAGGTAAATCACATTAAATTTAATCTTTCATTTGTTTGACTGGAATTATATGAAATACTGTTGATACTTGAAATCTGGAAGGTTGCAGTTTTCAGGATATCCTGTACCACTTTCAATAGCTCTTTTATGACTGGGGAATTTGTTGTTTCAGCTTTAAACTCAAGAATGATGAGCTCACCGTATGCTTTTATCCACTTATATACCAGACTTGATTCAACAACTAGGTTTCGAATTTGTGAGCTGCACCTACAAGTCTCAACACATCCCGTGCTACACTACTTTTCTCTTTGAACGAAAGCTTTAGGGCCTATACGACTTTCAATAGTTTGTGTTACTAAGAGTGCATAATCCTAAATATTAAATACAAGAAAGTCATCCAGTTTCTAGTCTTCTATGAATCTCTTAGTTCTTTTTGAAGAGAAGTTAGGGATCTCTACCTATCGATTATTATGCCTCAAATCTAAATCAGTTGGGTTTAGGCGTTTAGCTATATGAATGCCCTGTAGTCAATCCAGTATATTTAGAGGAATGATTATGGTTACCTTATTCTAGGCTAGCAGTCAACCCACTGAACTGTCATCTATTTGTACCAACTACCAGGAAACCAACTATGCTTTGTGGAGCTCATCATGGGCCTTTTGCTCATATGCGTAGCCAATATTGGGTCTGCCATGAGCTTTTTGTTAGCTGATTGAGCAACAAGGTGCAACTGTGGAAGCTGCTCAGTCTTAAGGATAGTAATTATGTTGAAAGAACTAATTAGGCATTTTGGAAACATTGGTGTTTAGGAGGGGGCTGAATTCAGATCTGAGGTGTGCTGCAAGTAAACTCATGTGCAACTTTAGACATTTTGGTAGGAAATATCTTAAAATAACTAGTGAACATTTTAAAGTGTTCGATTACTTTGAATTATGAACAATATTTTCTTCAAAGAAAATGTTTGCTACCAAAATGGATAAAATGACAATCATCACTCATGGACCATAGTAATTTTTCTTTACAAGTATCTTAATCTTCATTTTGTCATTTACCTCAATCAACATTAGACTGTCATCAACCCTAACTACTGAAAAACATTAAAATAATATTCTTGCATCTTTTATTGAAACCAGTAATAGTATCATAGATCCGCAGCACAGAGGCTGTGCTGAATGCTGATAGCCATAATTTACAATTCAAAAACAACAAAAGTAAGTCCATGTTAGTCTTATAAGGAACCTATAATATCTATCAGTGGTTCGGAATATTTCTCACACTAAGGGTTTTTTCATGGAGAACAATTTCCTTCGTACTAAATGTTGGTCTCCATATTTCTGTTCTTTTAACTTATAGGTTAAATAGCTCTTTATTTTCTGACATCTATCCATTTTTGTTTCTAGTAAATACTGCTATTTATTATAGTTTTCCATTTGCTGATTGTGTGGGAACATTAACCGGATACACCAGTCAAGGGATGTTAATAGAAATTGCTTGTTGAACAGACTTCTAAAGAGTATTTGGAAAAGCACATG</genome_strand>
        <mrna_strand>AAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCTAAAGAGTATTTGGAAAAGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283514" ref_strand="+" ref_description="SGN-E283514 [cLER-12-O23]">
      <seq>tttgtatctgcacttggaattgcagttgaaaaatggcggacgaagcaaatagaactgcttttattgaaattcanggtcgaatgatagagactaccggtaaattgaagcaggttcaaacccagattcgaaacaaagaaaccgagaagaagcgtgcttatttgacattggaggaactgaaacagctgtctgatgacactaatacatacaaagccataggaagaacatttgtcttagagccaaaggctgtgttaatgaacgagcaagagcaaaaactcaaggatggtgaaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="-" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="88190" stop="84373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87890" g_stop="87835" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87747" g_stop="87694" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="110" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87396" g_stop="87291" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="216" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84891" g_stop="84885" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="223" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84741" g_stop="84673" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="292" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="-" ref_id="SGN-E283514" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87890" e_stop="87835"/>
          <exon e_start="87747" e_stop="87694"/>
          <exon e_start="87396" e_stop="87291"/>
          <exon e_start="84891" e_stop="84885"/>
          <exon e_start="84741" e_stop="84673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACTGTAAATTTCGTTTTTCATTTCACAATTTCTGTTTTTTTCCCCTCGAATTTTTACTCCTGATTATTTGTTTTTTATTTCCTTCAACAGGCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAGGTTAGTTCTTATTTTCATTTACATGTGTCTTTTACTCAGTTTCATGTTCGTAGAACTGTGAAAAATATCAACTTTTGTCTGTGAGATCGATTTGAAATTTTTCTAAAAAAACGTTATGGATTAATTTACTGATTATTTGCTTCTTCAGATTTGTATCCTGAAGAAAATGAAATGGGAAAATATATGCTTAAGAGTTGAATGAAATCTGAAAGGAACTGAAATTGGGCATCATTGAATTGATTGATTGAGATATTAATATGTTGTTGACTTAAGGTGAAGAGTTTTTTTGGTTTGTAGGTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAGGTTAGCTTCTGCCAAAAGAAAATATAAGTTAGTTTAAATTTGTGCTCTAGTCATAAACTACTTTTGATCTGATAGTCTGAAAAATTTGTTCTTTCTTTTCTACTCTCACTTCGTGCGTCAAGCAAATATATGAAGAGGTCTCAGTGGTTGGTGTATTTTTTTTCCATTTTGTAGCCTCTCACTGTGTGGCAGATCAAGTACATTAATTGATTCAGTAGCAAACTATTAGTTTCTATTTTAACAGAAGAATCAAAGGTACACTAGTTTTTAGGAGAACTGGTTCTCTTAGGTATCACATTGTATATTTTTGTGTCTGACACACACGTAAATATAGGTGTTCGTACAAGTAATATAGAATTTGAGTCCATATATCATTCGTTCCCACAAATACTTAGAATTGACTGTTTAATTTGAATTCCAACAATAACTATCCGAGAAATCAACAATTTTTGGAGTTTGTTATGCTAATGATTTAACTAAGAGAAAACAGTAAAAATGATGCAATGCTAAGACAATTTTGTTTTATCAGATTAGAGAGAAATCTAGGGCTATGACATCTAACAGTCCAGTTGAGTCTTTTGATCGTCATACCTATTGATTTTCCTGAGTTACTAGTTGCAGGTTAATATTATCTTATGAGTCTCGAATTGCTCACATTCCTATTCAAGCTACTCCAACGCCTACATCTCTATGGTCGTCAGACTGTAGCTGAATGTATTTAAATCTTTGTATCAACTAAGTGAGGCTTAAGGCCAAAGGGTGTATCTCTATCCACTCTAGTGAAACAATCCCCTGTCTATTGGTTCATGAACATACTCAATTTATCAGTGCCAAAACCCTAGGAGCTAGGACTATGGAGTTTAGCTACACATGATTCCAATACAATGACAAGAATTGATGAATAGCATGTGGCCATGATGAAAAAATAAGACGAAGAAAGATAAGCGCCCTACAAATAAGACTCTTAGCCCTTGCTCTGCTTCTAAACAATGTTGATTCCCCTTAAAATCATGTTTAAGGAGCATATATAGAGTATCTATTAGCCCGAGAGAAAATACCCTTAGATGAATGAATTATAGAACTCAGCACCGCCTTGGTGCATTTTGCAGTTCCTTTGTTCCAGGAACTTGACTGCTCGGCAAGCGACAACAGGCACATTTGCACATGGACAAAATGTGCCGATGTCGTTTTTCTTCTGGTTTCCGCGTGCATTCCATCGTCGGACCTCAAAGCTCCAAATCACTTGTTTTAGGTCCAACATTCTTCATTTTCATCCTACACCAAAAACACAATAATAAGCACAAAGTGATCAAAGTTATACTCAAATGACTACAAAAGAGCCCAAATTTGGTTAATGGAGATTTAATAAAATACCTACAAACTGCAAGGGAAGTTCTAAAGAGCAATCGTGAGATCAACAACTTCACATTAAAGTGGATATGGGTCCTCAAAAACTCAATAAATATGCACAATGAGTGTGGTGTAGTTATATTGGAAAGTCATACTCAAATGCTATGAAAGAACCCAAATGTCATAAATAGCGATATGATAAATACCTACAAATTGGAAAGGTACTTCTAATGAACAACTGTGAAACCAACAATGTTACATTAAAGTGGATATAGGTCCTCCAAAAACCAATATATCTGCACGAGTGTGGTAGAGATTCTTCTATGAAGATGCATCCATTGTCATATAATATTGAACAGACTTAGAAAATTATCACATCCAAGCACGAGCGTAGTTATGATTAGAGGTTGGTTTGGCCAATGTCCTATATAAAACTCTAAATGCATTGGTCCATAGATGTGAAACTATGATGATTGAAGGTTCTTAAAAGGGACGTGACATACAAATCAAATGGAGGGAAGTTATTCCAAAATACATACAATTTCTTGAAATCAATGAGGATTTAGTTTCGAACTAACCACAATGGAATTAAAAGATCCATAAATGTGCTACCAATAAGCAGGGATTACAATTTTATTGTTTTAATTTTGTTAAATTATGTTAGGTTCAGTATTTGCCATTTGGCATGCGACTTTTTGGTCGGGTTAGATATCTTCTATCAGTAAAGGAAAAGTGTGACATTCAGAAAACCTCTGTGGTTAAAACGATAAAGAATAAAACCTCTAATTTTAAAGAATTCATATTTGCCTGAAGAATTTTTTTAAATGAACACTTCGAAAAGAATATTATTTGATGTTGAACTCATTTGGCCTCGAAGACAGTGAAGTAATTATAGAAGATCTCTTGTAGACTGTAGTCAATCCAACCAGTTTGGGAGTGAGAGTTATTTAATTGTGTGATTTGTTAATCTTGAAATATCACTTCTTAAATTAAATTTGAACAGAGTTCTAATAATGTTGTGTTCCATGGTTTTCTATCTTTTGTTGCAGGAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGC</genome_strand>
        <mrna_strand>TTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT.......................................................................................GCTTTTATTGAAATTCANGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG.........................................................................................................................................................................................................................................................................................................GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAC...............................................................................................................................................ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707410" ref_strand="+" ref_description="SGN-E707410 [FA32DF11]">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="107722" stop="109061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108021" g_stop="108761" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E707410" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108021" e_stop="108761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTGATACGGGTGCCACCTCATGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAGCCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGATGGAAGCAACCTCTTACAAATCGGTAACCAAGAAGGTGGTGGCTGATTTTGTCCGCAACAATTTGATATGCAGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCGAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTCAAGATTACTCATCGAAGGTCAATTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTCTGAGGAAAATGATCAACAAGCAGCGAGGTTGGCATGAAATGTTGCCATATGCTCTACTAGGTTATCGAACAATGGTCAGAACATCGACTGGGGCTACTCCATACCTGCTAGTATATGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCATTGAGGATCATCCAAGAAGCTGAGTTAAGCAACGCGGATTGGGTTAGCAAACGAATTGATCAACTATCTTTGATTGATGAGAAGAGAATGGTCGCCGTCTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTCGAAGTTGGTCAGTTGGTCCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTG-CGTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355122" ref_strand="+" ref_description="SGN-E355122 [cTOS-18-H18]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="107785" stop="109115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108080" g_stop="108815" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E355122" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108080" e_stop="108815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAGCCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGATGGAAGCAACCTCTTACAAATCGGTAACCAAGAAGGTGGTGGCTGATTTTGTCCGCAACAATTTGATATGCAGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCGAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTCAAGATTACTCATCGAAGGTCAATTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTCTGAGGAAAATGATCAACAAGCAGCGAGGTTGGCATGAAATGTTGCCATATGCTCTACTAGGTTATCGAACAATGGTCAGAACATCGACTGGGGCTACTCCATACCTGCTAGTATATGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCATTGAGGATCATCCAAGAAGCTGAGTTAAGCAACGCGGATTGGGTTAGCAAACGAATTGATCAACTATCTTTGATTGATGAGAAGAGAATGGTCGCCGTCTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTCGAAGTTGGTCAGTTGGTCCTTAAGCGTATTTTTCCTCATCAAGACGAATACAAAGGAAAGTTCGCACCAAACTG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350936" ref_strand="+" ref_description="SGN-E350936 [cTOS-7-D2]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcancaaagagtaagagccagaattttgaaagtggccagttggttcttaagcgtatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="107785" stop="109075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108080" g_stop="108775" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E350936" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108080" e_stop="108775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAGCCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGATGGAAGCAACCTCTTACAAATCGGTAACCAAGAAGGTGGTGGCTGATTTTGTCCGCAACAATTTGATATGCAGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCGAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTCAAGATTACTCATCGAAGGTCAATTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTCTGAGGAAAATGATCAACAAGCAGCGAGGTTGGCATGAAATGTTGCCATATGCTCTACTAGGTTATCGAACAATGGTCAGAACATCGACTGGGGCTACTCCATACCTGCTAGTATATGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCATTGAGGATCATCCAAGAAGCTGAGTTAAGCAACGCGGATTGGGTTAGCAAACGAATTGATCAACTATCTTTGATTGATGAGAAGAGAATGGTCGCCGTCTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTCGAAGTTGGTCAGTTGGTCCTTAAGCGTATTTTTC</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCANCAAAGAGTAAGAGCCAG-AATTTTGAAAGTGGCCAGTTGGTTCTTAAGCGTATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353644" ref_strand="+" ref_description="SGN-E353644 [cTOS-10-I24]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033D17-eXSaf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0033D17.1" temp_strand="+" temp_description="C07HBa0033D17.1  AC236935.1 htgs_phase:1 submitted_to_sgn_as:gi|242118053|gb|AC236935.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0033D17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces">
        <position start="107785" stop="109074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108080" g_stop="108774" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033D17.1" gen_strand="+" ref_id="SGN-E353644" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033D17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108080" e_stop="108774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAGCCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGATGGAAGCAACCTCTTACAAATCGGTAACCAAGAAGGTGGTGGCTGATTTTGTCCGCAACAATTTGATATGCAGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCGAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTCAAGATTACTCATCGAAGGTCAATTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTCTGAGGAAAATGATCAACAAGCAGCGAGGTTGGCATGAAATGTTGCCATATGCTCTACTAGGTTATCGAACAATGGTCAGAACATCGACTGGGGCTACTCCATACCTGCTAGTATATGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCATTGAGGATCATCCAAGAAGCTGAGTTAAGCAACGCGGATTGGGTTAGCAAACGAATTGATCAACTATCTTTGATTGATGAGAAGAGAATGGTCGCCGTCTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTCGAAGTTGGTCAGTTGGTCCTTAAGCGTATTTTT</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>62</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11674" PGL_stop="10829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11674" e_stop="11449"/>
            <exon e_start="11060" e_stop="10829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.642" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11674" e_stop="11449" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.642">
            <gDNA_intron_boundary i_start="11448" i_stop="11061" i_length="388"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11060" e_stop="10829" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11674" stop="11449"/>
              <exon start="11060" stop="10829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCATTTGTTAAAAGAGAAGTAGAAAACTGGTATTTACAACTTTCTAAGAAGAGATTATAAGTTCTATACCATCTTTGCCTTTGTTTAAATTTTGATGCAGGAATTTAACGCAAAGCTTTCTGACTTTGGACTTGCAAAAGATGGGCCCATGGGAGATCAAACACATGTATCAACTCGTGTGATGGGCACTTATGGCTATGCTGCTCCAGAGTATGTCATGACCG : GACATTTAACAGCCAGAAGTGATGTTTATGGTTTTGGCGTTGTTTTGCTTGAAATGCTCATTGGAAGGAGAGCTATGGACAAAAGTAAACCTAGCCGGGAGCATAACCTTGTAGAGTTTGCTCGGCCTCTCTTGAATCATGGCAAGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> V  H  L  L  K  E  K  *  K  T  G  I  Y  N  F  L  R  R  D  Y  K  F  Y  T  I  F  A  F  V  *  I  L  M  Q  E  F  N  A  K  L  S  D  F  G  L  A  K  D  G  P  M  G  D  Q  T  H  V  S  T  R  V  M  G  T  Y  G  Y  A  A  P  E  Y  V  M  T   : G  H  L  T  A  R  S  D  V  Y  G  F  G  V  V  L  L  E  M  L  I  G  R  R  A  M  D  K  S  K  P  S  R  E  H  N  L  V  E  F  A  R  P  L  L  N  H  G  K  K  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  F  I  C  *  K  R  S  R  K  L  V  F  T  T  F  *  E  E  I  I  S  S  I  P  S  L  P  L  F  K  F  *  C  R  N  L  T  Q  S  F  L  T  L  D  L  Q  K  M  G  P  W  E  I  K  H  M  Y  Q  L  V  *  W  A  L  M  A  M  L  L  Q  S  M  S  *  P  :  D  I  *  Q  P  E  V  M  F  M  V  L  A  L  F  C  L  K  C  S  L  E  G  E  L  W  T  K  V  N  L  A  G  S  I  T  L  *  S  L  L  G  L  S  *  I  M  A  R  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   S  F  V  K  R  E  V  E  N  W  Y  L  Q  L  S  K  K  R  L  *  V  L  Y  H  L  C  L  C  L  N  F  D  A  G  I  *  R  K  A  F  *  L  W  T  C  K  R  W  A  H  G  R  S  N  T  C  I  N  S  C  D  G  H  L  W  L  C  C  S  R  V  C  H  D  R :   T  F  N  S  Q  K  *  C  L  W  F  W  R  C  F  A  *  N  A  H  W  K  E  S  Y  G  Q  K  *  T  *  P  G  A  *  P  C  R  V  C  S  A  S  L  E  S  W  Q  E  A  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11584" stop="11449"/>
                    <exon start="11060" stop="10831"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILMQEFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRAMDKSKPSREHNLVEFARPLLNHGKKLFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15615" PGL_stop="11770"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15615" e_stop="15170"/>
            <exon e_start="14326" e_stop="13983"/>
            <exon e_start="12345" e_stop="12210"/>
            <exon e_start="11877" e_stop="11770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.807" acc_prob="0.087" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15615" e_stop="15170" e_length="446"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15169" i_stop="14327" i_length="843"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14326" e_stop="13983" e_length="344"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13982" i_stop="12346" i_length="1637"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="12345" e_stop="12210" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.807" acc_prob="0.087">
            <gDNA_intron_boundary i_start="12209" i_stop="11878" i_length="332"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11877" e_stop="11770" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15615" stop="15170"/>
              <exon start="14326" stop="14161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15519" stop="15170"/>
              <exon start="14326" stop="13983"/>
              <exon start="12345" stop="12268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15518" stop="15170"/>
              <exon start="14326" stop="14061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15518" stop="15170"/>
              <exon start="14326" stop="14211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15473" stop="15170"/>
              <exon start="14326" stop="14057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15464" stop="15170"/>
              <exon start="14326" stop="13983"/>
              <exon start="12345" stop="12226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15464" stop="15170"/>
              <exon start="14326" stop="14150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15461" stop="15170"/>
              <exon start="14326" stop="14016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15387" stop="15170"/>
              <exon start="14326" stop="13983"/>
              <exon start="12345" stop="12230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15276" stop="15170"/>
              <exon start="14326" stop="14049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14093" stop="13983"/>
              <exon start="12345" stop="12210"/>
              <exon start="11877" stop="11770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208768" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTATCTTCCTACCAAAACACTTGACTGAATGAATAATCAGATCAAACACTCTCTTAAAAAACCCGAAAAAATTAAAATGAATTTAGTGGTTCCACTTGTTTAGACCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATTACATACAAGATTTTTCTCTGTTCCCCTCACATTTCTTGGAGTATCCCCACTGACCCAGATCGGATTCTTGCAATATTTATCAAGTTTCCTGTTACCCATTTCAGATTCTGTTGGCAATTGAGAGTGACAACTTAGTAAACTGTTTTAAGGAAAAAGAAAGGATTTTTAGTGCATAAAGATCTTATCTTTAAGTTTCTTTTGGGTAACTGAAATGCAAATCTGTTGTTAAGGACAGATTTCATGGGTTCTTGTTTTAGTATTGAAGAAGATGAATCAGAACCGCGACCACATAACAAGCCAG : TTGGCCATGGAGTTGGTGCATATCCCAGATCAAATCCTGTAATTCCCCAGAATGCAAATCTTAATGCTCATGACCCCGAAAAGGCAAACAGCATTGTGGTGATTCCCAAAAATGTCAAGGACCTGCGGCAGAATCCTGGGAGTAGCGACCTTGATATCTTCACATATGAAGAGATGAAGTTGTCTACCAAGCACTTCCGACCAGATAAGGTACTCGGAGAGGGTGGGTTTGGCATTGTCTACAAAGGAGTTATTGATGAAAATGTCAGACCAGGATACAAGACCACATATGTTGCCATTAAGGAGCTTGATCCAGAAAGTCTTCAGGGCGACAGAGAGTGGCTG : GCAGAGGTGAATTACTTGGGGCATATTCGACATCCGAATCTGGTGAAGCTGATAGGGTATTGCTGTGAGGATTACCATAGACTGTTGGTTTATGAATATATGGCATCTGGCAGCCTGGAAAAGCACCTTTTCCCTA : AAGTGTGTGCTACTCTATCTTGGTCAAGAAGAATGAGAATTGCTTTGGATGCTGCTAAAGGGCTTGCTTTTCTTCATGGGGCTGAAAGGCCTATAATATATAGGGACT</gDNA_template>
            <first_frame> N  Y  L  P  T  K  T  L  D  *  M  N  N  Q  I  K  H  S  L  K  K  P  E  K  I  K  M  N  L  V  V  P  L  V  *  T  L  P  S  S  S  S  S  S  S  S  L  H  Y  I  Q  D  F  S  L  F  P  S  H  F  L  E  Y  P  H  *  P  R  S  D  S  C  N  I  Y  Q  V  S  C  Y  P  F  Q  I  L  L  A  I  E  S  D  N  L  V  N  C  F  K  E  K  E  R  I  F  S  A  *  R  S  Y  L  *  V  S  F  G  *  L  K  C  K  S  V  V  K  D  R  F  H  G  F  L  F  *  Y  *  R  R  *  I  R  T  A  T  T  *  Q  A  S :   W  P  W  S  W  C  I  S  Q  I  K  S  C  N  S  P  E  C  K  S  *  C  S  *  P  R  K  G  K  Q  H  C  G  D  S  Q  K  C  Q  G  P  A  A  E  S  W  E  *  R  P  *  Y  L  H  I  *  R  D  E  V  V  Y  Q  A  L  P  T  R  *  G  T  R  R  G  W  V  W  H  C  L  Q  R  S  Y  *  *  K  C  Q  T  R  I  Q  D  H  I  C  C  H  *  G  A  *  S  R  K  S  S  G  R  Q  R  V  A   : G  R  G  E  L  L  G  A  Y  S  T  S  E  S  G  E  A  D  R  V  L  L  *  G  L  P  *  T  V  G  L  *  I  Y  G  I  W  Q  P  G  K  A  P  F  P  * :   S  V  C  Y  S  I  L  V  K  K  N  E  N  C  F  G  C  C  *  R  A  C  F  S  S  W  G  *  K  A  Y  N  I  *  G   </first_frame>
            <second_frame>  I  I  F  L  P  K  H  L  T  E  *  I  I  R  S  N  T  L  L  K  N  P  K  K  L  K  *  I  *  W  F  H  L  F  R  P  F  L  L  L  L  L  L  L  L  L  C  I  T  Y  K  I  F  L  C  S  P  H  I  S  W  S  I  P  T  D  P  D  R  I  L  A  I  F  I  K  F  P  V  T  H  F  R  F  C  W  Q  L  R  V  T  T  *  *  T  V  L  R  K  K  K  G  F  L  V  H  K  D  L  I  F  K  F  L  L  G  N  *  N  A  N  L  L  L  R  T  D  F  M  G  S  C  F  S  I  E  E  D  E  S  E  P  R  P  H  N  K  P   : V  G  H  G  V  G  A  Y  P  R  S  N  P  V  I  P  Q  N  A  N  L  N  A  H  D  P  E  K  A  N  S  I  V  V  I  P  K  N  V  K  D  L  R  Q  N  P  G  S  S  D  L  D  I  F  T  Y  E  E  M  K  L  S  T  K  H  F  R  P  D  K  V  L  G  E  G  G  F  G  I  V  Y  K  G  V  I  D  E  N  V  R  P  G  Y  K  T  T  Y  V  A  I  K  E  L  D  P  E  S  L  Q  G  D  R  E  W  L  :  A  E  V  N  Y  L  G  H  I  R  H  P  N  L  V  K  L  I  G  Y  C  C  E  D  Y  H  R  L  L  V  Y  E  Y  M  A  S  G  S  L  E  K  H  L  F  P   : K  V  C  A  T  L  S  W  S  R  R  M  R  I  A  L  D  A  A  K  G  L  A  F  L  H  G  A  E  R  P  I  I  Y  R  D  </second_frame>
            <third_frame>   L  S  S  Y  Q  N  T  *  L  N  E  *  S  D  Q  T  L  S  *  K  T  R  K  N  *  N  E  F  S  G  S  T  C  L  D  P  S  F  F  F  F  F  F  F  F  S  A  L  H  T  R  F  F  S  V  P  L  T  F  L  G  V  S  P  L  T  Q  I  G  F  L  Q  Y  L  S  S  F  L  L  P  I  S  D  S  V  G  N  *  E  *  Q  L  S  K  L  F  *  G  K  R  K  D  F  *  C  I  K  I  L  S  L  S  F  F  W  V  T  E  M  Q  I  C  C  *  G  Q  I  S  W  V  L  V  L  V  L  K  K  M  N  Q  N  R  D  H  I  T  S  Q  :  L  A  M  E  L  V  H  I  P  D  Q  I  L  *  F  P  R  M  Q  I  L  M  L  M  T  P  K  R  Q  T  A  L  W  *  F  P  K  M  S  R  T  C  G  R  I  L  G  V  A  T  L  I  S  S  H  M  K  R  *  S  C  L  P  S  T  S  D  Q  I  R  Y  S  E  R  V  G  L  A  L  S  T  K  E  L  L  M  K  M  S  D  Q  D  T  R  P  H  M  L  P  L  R  S  L  I  Q  K  V  F  R  A  T  E  S  G  W :   Q  R  *  I  T  W  G  I  F  D  I  R  I  W  *  S  *  *  G  I  A  V  R  I  T  I  D  C  W  F  M  N  I  W  H  L  A  A  W  K  S  T  F  S  L  :  K  C  V  L  L  Y  L  G  Q  E  E  *  E  L  L  W  M  L  L  K  G  L  L  F  F  M  G  L  K  G  L  *  Y  I  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15260" stop="15170"/>
                    <exon start="14326" stop="13983"/>
                    <exon start="12345" stop="12210"/>
                    <exon start="11877" stop="11771"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NANLLLRTDFMGSCFSIEEDESEPRPHNKPVGHGVGAYPRSNPVIPQNANLNAHDPEKANSIVVIPKNVKDLRQNPGSSDLDIFTYEEMKLSTKHFRPDKVLGEGGFGIVYKGVIDENVRPGYKTTYVAIKELDPESLQGDREWLAEVNYLGHIRHPNLVKLIGYCCEDYHRLLVYEYMASGSLEKHLFPKVCATLSWSRRMRIALDAAKGLAFLHGAERPIIYRD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="49677" PGL_stop="50352"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49677" e_stop="50352"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="49677" e_stop="50352" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49677" stop="50352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49697" stop="50271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49699" stop="50271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGTGGAAAGGTACAAGGCTTGACTTGTAGCTAAAGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTGCTAAGATGGTCACTGTCAGGTCAGTTGTGGCTGTGGTAGCAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAAGTGTATTTGGAGGTTCCTTCTGGTTTTGCTAGCCAGGAGGGGAATCATGTTGTCTGCAAATTACATAAGTCTTTTTATGGACTCAAACAGGCACCTAGGCAATGGAACAAGAAATTCACTGATGCATTGATACAACTTGGCTTCTCATAAAGTCATTTTGACTATTCCTTATTCACCAAGACAGTTCAAGGAGAGTTGGCAGTTGTTTTAGTTTATGTGGATGATTTGCTGGTGACAGGAAGCAGTACAGATCTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTCTTTCTTGTAATTGAATTTGTGAGATCACGAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTAGTGAGTTGGGATTGAGTGGCTCTAAACCAGTTAACACACCTTTGGAGACAAATCTGAAACTTACATCAGTTGACTATGATG</gDNA_template>
            <first_frame> A  V  E  R  Y  K  A  *  L  V  A  K  G  Y  S  Q  Q  E  G  L  D  Y  T  E  T  F  S  P  V  A  K  M  V  T  V  R  S  V  V  A  V  V  A  A  K  H  W  S  I  F  Q  M  D  V  H  N  A  F  L  Q  G  D  L  V  E  E  V  Y  L  E  V  P  S  G  F  A  S  Q  E  G  N  H  V  V  C  K  L  H  K  S  F  Y  G  L  K  Q  A  P  R  Q  W  N  K  K  F  T  D  A  L  I  Q  L  G  F  S  *  S  H  F  D  Y  S  L  F  T  K  T  V  Q  G  E  L  A  V  V  L  V  Y  V  D  D  L  L  V  T  G  S  S  T  D  L  I  L  Q  T  R  N  D  L  K  L  K  F  K  M  K  D  L  G  E  L  K  F  F  L  V  I  E  F  V  R  S  R  K  G  I  V  M  S  Q  R  K  Y  A  L  E  L  I  S  E  L  G  L  S  G  S  K  P  V  N  T  P  L  E  T  N  L  K  L  T  S  V  D  Y  D  </first_frame>
            <second_frame>  L  W  K  G  T  R  L  D  L  *  L  K  V  I  A  N  K  R  G  *  I  T  L  R  P  S  L  Q  L  L  R  W  S  L  S  G  Q  L  W  L  W  *  Q  L  N  I  G  L  F  F  R  W  M  F  I  M  L  F  F  K  G  I  *  W  R  K  C  I  W  R  F  L  L  V  L  L  A  R  R  G  I  M  L  S  A  N  Y  I  S  L  F  M  D  S  N  R  H  L  G  N  G  T  R  N  S  L  M  H  *  Y  N  L  A  S  H  K  V  I  L  T  I  P  Y  S  P  R  Q  F  K  E  S  W  Q  L  F  *  F  M  W  M  I  C  W  *  Q  E  A  V  Q  I  *  F  Y  K  Q  G  M  T  *  S  *  S  S  K  *  K  I  L  E  N  *  S  S  F  L  *  L  N  L  *  D  H  E  R  E  *  *  *  A  K  G  S  M  H  W  N  *  L  V  S  W  D  *  V  A  L  N  Q  L  T  H  L  W  R  Q  I  *  N  L  H  Q  L  T  M  M </second_frame>
            <third_frame>   C  G  K  V  Q  G  L  T  C  S  *  R  L  *  P  T  R  G  V  R  L  H  *  D  L  L  S  S  C  *  D  G  H  C  Q  V  S  C  G  C  G  S  S  *  T  L  V  Y  F  S  D  G  C  S  *  C  F  S  S  R  G  F  S  G  G  S  V  F  G  G  S  F  W  F  C  *  P  G  G  E  S  C  C  L  Q  I  T  *  V  F  L  W  T  Q  T  G  T  *  A  M  E  Q  E  I  H  *  C  I  D  T  T  W  L  L  I  K  S  F  *  L  F  L  I  H  Q  D  S  S  R  R  V  G  S  C  F  S  L  C  G  *  F  A  G  D  R  K  Q  Y  R  S  D  S  T  N  K  E  *  L  K  A  K  V  Q  N  E  R  S  W  R  I  E  V  L  S  C  N  *  I  C  E  I  T  K  G  N  S  D  E  P  K  E  V  C  I  G  T  N  *  *  V  G  I  E  W  L  *  T  S  *  H  T  F  G  D  K  S  E  T  Y  I  S  *  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50025" stop="50351"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHFDYSLFTKTVQGELAVVLVYVDDLLVTGSSTDLILQTRNDLKLKFKMKDLGELKFFLVIEFVRSRKGIVMSQRKYALELISELGLSGSKPVNTPLETNLKLTSVDYD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49701" stop="50024"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVAKGYSQQEGLDYTETFSPVAKMVTVRSVVAVVAAKHWSIFQMDVHNAFLQGDLVEEVYLEVPSGFASQEGNHVVCKLHKSFYGLKQAPRQWNKKFTDALIQLGFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="54637" PGL_stop="53911"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54637" e_stop="53911"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="54637" e_stop="53911" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54637" stop="54152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54211" stop="53911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCACACCCACAACATCTCCAGACCGATCCGTTTTGGGTCCTTCCCGGCCACCCTTGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCGGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATACTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGAAGATGACAGTATTTCCAGGTACAAGGCTTGTTTGGTTGCTAAAGGCTACAATCAAGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTATCACTCGCCGTGCGCAACAATTAGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTTTCTGTATGGGCTCAAGCAAGCCCCCCATGCTTGGTACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  T  P  T  T  S  P  D  R  S  V  L  G  P  S  R  P  P  L  N  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  R  I  V  N  Q  Q  P  T  L  L  P  Q  K  I  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  K  M  T  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  K  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  Y  H  S  P  C  A  T  I  S  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  F  C  M  G  S  S  K  P  P  M  L  G  T  H  V  *  K  R  </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  H  P  Q  H  L  Q  T  D  P  F  W  V  L  P  G  H  P  *  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  G  *  *  T  N  N  L  L  C  C  L  K  K  Y  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  *  R  *  Q  Y  F  Q  V  Q  G  L  F  G  C  *  R  L  Q  S  R  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  I  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  S  E  N  V </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  R  P  I  R  F  G  S  F  P  A  T  L  E  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  R  G  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  T  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  E  D  D  S  I  S  R  Y  K  A  C  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  A  V  R  N  N  *  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  F  L  Y  G  L  K  Q  A  P  H  A  W  Y  T  R  L  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54635" stop="54093"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISRPIRFGSFPATLESPPPVPPPNTHPMLTRGKAGIFKPKTFQATILPNTPLPDSEPTTYSVASKNTYWRHAMDDEFKALTDQKTWVLVPKPHGRHPVGCKWVYKIKHNEDDSISRYKACLVAKGYNQEYGLDYSETFSPVIRQETIRLVLSLAVRNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="63081" PGL_stop="64347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63081" e_stop="63555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="63081" e_stop="63555" e_length="475"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63081" stop="63551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63083" stop="63488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63086" stop="63530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63087" stop="63551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63087" stop="63541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63091" stop="63555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63096" stop="63540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63096" stop="63483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63104" stop="63545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATACATAGCAGCAGCAATAACAACTTATAGCTACAAATTTTTTTCACAGGAAGAATAAAATATGTAACCAAGCATGCAATTGTGATTAAAATCATGGGCCGTACTGGATCCAGGGGGCGGTGACTCAAGTGAGAGTCAAGTTTCTTGACGACCAGAACATGTTTATCATGAGAAATTTCAAGGGACCAGTCAGAGAGGGTGATATTATCACATTGTTGGAATCTGAGAGGAAGGCTAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGTTGGGATTTATTTCCTATATAAATAGTGTTTGATTTTATTTGCTTAGACTCTTATAAGTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTTAAAATTTTGCTAGCATTGCTTCAATGGCAACAAGTAATGGTTCTTATTAAAAAAAAAAAAAAATATGTTG</gDNA_template>
            <first_frame> L  I  H  S  S  S  N  N  N  L  *  L  Q  I  F  F  T  G  R  I  K  Y  V  T  K  H  A  I  V  I  K  I  M  G  R  T  G  S  R  G  R  *  L  K  *  E  S  S  F  L  T  T  R  T  C  L  S  *  E  I  S  R  D  Q  S  E  R  V  I  L  S  H  C  W  N  L  R  G  R  L  G  D  C  A  E  P  I  I  M  I  A  I  S  S  T  *  L  L  V  G  I  Y  F  L  Y  K  *  C  L  I  L  F  A  *  T  L  I  S  L  N  M  L  I  L  L  H  F  M  F  L  E  *  F  H  V  K  I  L  L  A  L  L  Q  W  Q  Q  V  M  V  L  I  K  K  K  K  K  Y  V  </first_frame>
            <second_frame>  *  Y  I  A  A  A  I  T  T  Y  S  Y  K  F  F  S  Q  E  E  *  N  M  *  P  S  M  Q  L  *  L  K  S  W  A  V  L  D  P  G  G  G  D  S  S  E  S  Q  V  S  *  R  P  E  H  V  Y  H  E  K  F  Q  G  T  S  Q  R  G  *  Y  Y  H  I  V  G  I  *  E  E  G  *  E  I  A  L  S  P  *  L  *  L  P  Y  R  V  L  D  Y  W  L  G  F  I  S  Y  I  N  S  V  *  F  Y  L  L  R  L  L  *  V  *  I  C  *  F  C  C  T  L  C  F  W  N  S  F  M  L  K  F  C  *  H  C  F  N  G  N  K  *  W  F  L  L  K  K  K  K  N  M  L </second_frame>
            <third_frame>   D  T  *  Q  Q  Q  *  Q  L  I  A  T  N  F  F  H  R  K  N  K  I  C  N  Q  A  C  N  C  D  *  N  H  G  P  Y  W  I  Q  G  A  V  T  Q  V  R  V  K  F  L  D  D  Q  N  M  F  I  M  R  N  F  K  G  P  V  R  E  G  D  I  I  T  L  L  E  S  E  R  K  A  R  R  L  R  *  A  H  N  Y  D  C  H  I  E  Y  L  I  I  G  W  D  L  F  P  I  *  I  V  F  D  F  I  C  L  D  S  Y  K  F  E  Y  V  D  F  V  A  L  Y  V  S  G  I  V  S  C  *  N  F  A  S  I  A  S  M  A  T  S  N  G  S  Y  *  K  K  K  K  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0033D17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63081" e_stop="63551"/>
            <exon e_start="64343" e_stop="64347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.808" e_score="0.932"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="63081" e_stop="63551" e_length="471"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.808">
            <gDNA_intron_boundary i_start="63552" i_stop="64342" i_length="791"/>
          </intron>
          <exon e_serial="2" e_score="0.800">
            <gDNA_exon_boundary e_start="64343" e_stop="64347" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63081" stop="63551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63083" stop="63488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63086" stop="63530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63087" stop="63551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63087" stop="63541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63096" stop="63540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63096" stop="63483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63104" stop="63545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63138" stop="63551"/>
              <exon start="64343" stop="64347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234188" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATACATAGCAGCAGCAATAACAACTTATAGCTACAAATTTTTTTCACAGGAAGAATAAAATATGTAACCAAGCATGCAATTGTGATTAAAATCATGGGCCGTACTGGATCCAGGGGGCGGTGACTCAAGTGAGAGTCAAGTTTCTTGACGACCAGAACATGTTTATCATGAGAAATTTCAAGGGACCAGTCAGAGAGGGTGATATTATCACATTGTTGGAATCTGAGAGGAAGGCTAGGAGATTGCGCTGAGCCCATAATTATGATTGCCATATCGAGTACTTGATTATTGGTTGGGATTTATTTCCTATATAAATAGTGTTTGATTTTATTTGCTTAGACTCTTATAAGTTTGAATATGTTGATTTTGTTGCACTTTATGTTTCTGGAATAGTTTCATGTTAAAATTTTGCTAGCATTGCTTCAATGGCAACAAGTAATGGTTCTTATTAAAAAAAAAAAAAAATAT : AAGAA</gDNA_template>
            <first_frame> L  I  H  S  S  S  N  N  N  L  *  L  Q  I  F  F  T  G  R  I  K  Y  V  T  K  H  A  I  V  I  K  I  M  G  R  T  G  S  R  G  R  *  L  K  *  E  S  S  F  L  T  T  R  T  C  L  S  *  E  I  S  R  D  Q  S  E  R  V  I  L  S  H  C  W  N  L  R  G  R  L  G  D  C  A  E  P  I  I  M  I  A  I  S  S  T  *  L  L  V  G  I  Y  F  L  Y  K  *  C  L  I  L  F  A  *  T  L  I  S  L  N  M  L  I  L  L  H  F  M  F  L  E  *  F  H  V  K  I  L  L  A  L  L  Q  W  Q  Q  V  M  V  L  I  K  K  K  K  K  Y  :  K   </first_frame>
            <second_frame>  *  Y  I  A  A  A  I  T  T  Y  S  Y  K  F  F  S  Q  E  E  *  N  M  *  P  S  M  Q  L  *  L  K  S  W  A  V  L  D  P  G  G  G  D  S  S  E  S  Q  V  S  *  R  P  E  H  V  Y  H  E  K  F  Q  G  T  S  Q  R  G  *  Y  Y  H  I  V  G  I  *  E  E  G  *  E  I  A  L  S  P  *  L  *  L  P  Y  R  V  L  D  Y  W  L  G  F  I  S  Y  I  N  S  V  *  F  Y  L  L  R  L  L  *  V  *  I  C  *  F  C  C  T  L  C  F  W  N  S  F  M  L  K  F  C  *  H  C  F  N  G  N  K  *  W  F  L  L  K  K  K  K  N  I :   R  </second_frame>
            <third_frame>   D  T  *  Q  Q  Q  *  Q  L  I  A  T  N  F  F  H  R  K  N  K  I  C  N  Q  A  C  N  C  D  *  N  H  G  P  Y  W  I  Q  G  A  V  T  Q  V  R  V  K  F  L  D  D  Q  N  M  F  I  M  R  N  F  K  G  P  V  R  E  G  D  I  I  T  L  L  E  S  E  R  K  A  R  R  L  R  *  A  H  N  Y  D  C  H  I  E  Y  L  I  I  G  W  D  L  F  P  I  *  I  V  F  D  F  I  C  L  D  S  Y  K  F  E  Y  V  D  F  V  A  L  Y  V  S  G  I  V  S  C  *  N  F  A  S  I  A  S  M  A  T  S  N  G  S  Y  *  K  K  K  K  I   : *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0033D17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="68683" PGL_stop="69941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68683" e_stop="68912"/>
            <exon e_start="69030" e_stop="69215"/>
            <exon e_start="69828" e_stop="69941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68683" e_stop="68912" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68913" i_stop="69029" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69030" e_stop="69215" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.820">
            <gDNA_intron_boundary i_start="69216" i_stop="69827" i_length="612"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69828" e_stop="69941" e_length="114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68683" stop="68912"/>
              <exon start="69030" stop="69214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68687" stop="68912"/>
              <exon start="69030" stop="69215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68705" stop="68912"/>
              <exon start="69030" stop="69215"/>
              <exon start="69828" stop="69941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68706" stop="68912"/>
              <exon start="69030" stop="69215"/>
              <exon start="69828" stop="69941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738155" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTAACTCATTGATTAAGTAGAAAAAAAAATGTGGAAGCTAAAAACAGCACAAGGGGAAGGATTATGGCTAACAAGTAGCAATAATTATATTGGAAGGCAACATTGGGAATATGATGAAGAAGGTGGAACTCTTCAAGAAAGAGCTATTGTTGATGAAATGCGCCAAAATTTCACAAAAAATAGATTCCTTCATAAACAAAGTTCCGATTTACTCATGCGTATGCAG : GTAAGGAAAGAAAATGGATGTGTTGAAATTGGAGGAGAAGTGAAGTTAGAAGAATCAGAAGATGTAAGAGAAGAGGCTGTGAAAATTAGATTGAGAAAAAGTATAAGTTATTACTCAACAATTCAAGCACATGATGGTCATTGGCCGGCTGAATCTGCCGGCCCTTTATTCTTCCTACCCCCTTTG : GTGATGGCATTGTATGTGACTGGAGATATGAATGTTGTTTTGTCACCAGCTCATCAAATGGAGATTAAACGCTACACTTACAATCATCAGGTCTTATTCTACATATAATAATAT</gDNA_template>
            <first_frame> Q  I  N  S  L  I  K  *  K  K  K  C  G  S  *  K  Q  H  K  G  K  D  Y  G  *  Q  V  A  I  I  I  L  E  G  N  I  G  N  M  M  K  K  V  E  L  F  K  K  E  L  L  L  M  K  C  A  K  I  S  Q  K  I  D  S  F  I  N  K  V  P  I  Y  S  C  V  C  R :   *  G  K  K  M  D  V  L  K  L  E  E  K  *  S  *  K  N  Q  K  M  *  E  K  R  L  *  K  L  D  *  E  K  V  *  V  I  T  Q  Q  F  K  H  M  M  V  I  G  R  L  N  L  P  A  L  Y  S  S  Y  P  L  W :   *  W  H  C  M  *  L  E  I  *  M  L  F  C  H  Q  L  I  K  W  R  L  N  A  T  L  T  I  I  R  S  Y  S  T  Y  N  N   </first_frame>
            <second_frame>  K  L  T  H  *  L  S  R  K  K  N  V  E  A  K  N  S  T  R  G  R  I  M  A  N  K  *  Q  *  L  Y  W  K  A  T  L  G  I  *  *  R  R  W  N  S  S  R  K  S  Y  C  *  *  N  A  P  K  F  H  K  K  *  I  P  S  *  T  K  F  R  F  T  H  A  Y  A   : G  K  E  R  K  W  M  C  *  N  W  R  R  S  E  V  R  R  I  R  R  C  K  R  R  G  C  E  N  *  I  E  K  K  Y  K  L  L  L  N  N  S  S  T  *  W  S  L  A  G  *  I  C  R  P  F  I  L  P  T  P  F   : G  D  G  I  V  C  D  W  R  Y  E  C  C  F  V  T  S  S  S  N  G  D  *  T  L  H  L  Q  S  S  G  L  I  L  H  I  I  I  </second_frame>
            <third_frame>   N  *  L  I  D  *  V  E  K  K  M  W  K  L  K  T  A  Q  G  E  G  L  W  L  T  S  S  N  N  Y  I  G  R  Q  H  W  E  Y  D  E  E  G  G  T  L  Q  E  R  A  I  V  D  E  M  R  Q  N  F  T  K  N  R  F  L  H  K  Q  S  S  D  L  L  M  R  M  Q  :  V  R  K  E  N  G  C  V  E  I  G  G  E  V  K  L  E  E  S  E  D  V  R  E  E  A  V  K  I  R  L  R  K  S  I  S  Y  Y  S  T  I  Q  A  H  D  G  H  W  P  A  E  S  A  G  P  L  F  F  L  P  P  L  :  V  M  A  L  Y  V  T  G  D  M  N  V  V  L  S  P  A  H  Q  M  E  I  K  R  Y  T  Y  N  H  Q  V  L  F  Y  I  *  *  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68703" stop="68912"/>
                    <exon start="69030" stop="69215"/>
                    <exon start="69828" stop="69935"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEKKMWKLKTAQGEGLWLTSSNNYIGRQHWEYDEEGGTLQERAIVDEMRQNFTKNRFLHKQSSDLLMRMQVRKENGCVEIGGEVKLEESEDVREEAVKIRLRKSISYYSTIQAHDGHWPAESAGPLFFLPPLVMALYVTGDMNVVLSPAHQMEIKRYTYNHQVLFYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="71209" PGL_stop="75971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71209" e_stop="71316"/>
            <exon e_start="73846" e_stop="73959"/>
            <exon e_start="74082" e_stop="74201"/>
            <exon e_start="74300" e_stop="74422"/>
            <exon e_start="74907" e_stop="75005"/>
            <exon e_start="75210" e_stop="75266"/>
            <exon e_start="75450" e_stop="75496"/>
            <exon e_start="75617" e_stop="75760"/>
            <exon e_start="75856" e_stop="75971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.739" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.471" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71209" e_stop="71316" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.739">
            <gDNA_intron_boundary i_start="71317" i_stop="73845" i_length="2529"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73846" e_stop="73959" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.908" acc_prob="0.471">
            <gDNA_intron_boundary i_start="73960" i_stop="74081" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74082" e_stop="74201" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.986">
            <gDNA_intron_boundary i_start="74202" i_stop="74299" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74300" e_stop="74422" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.859">
            <gDNA_intron_boundary i_start="74423" i_stop="74906" i_length="484"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74907" e_stop="75005" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75006" i_stop="75209" i_length="204"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75210" e_stop="75266" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="75267" i_stop="75449" i_length="183"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75450" e_stop="75496" e_length="47"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.865">
            <gDNA_intron_boundary i_start="75497" i_stop="75616" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="75617" e_stop="75760" e_length="144"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.957">
            <gDNA_intron_boundary i_start="75761" i_stop="75855" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="0.966">
            <gDNA_exon_boundary e_start="75856" e_stop="75971" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71209" stop="71316"/>
              <exon start="73846" stop="73959"/>
              <exon start="74082" stop="74201"/>
              <exon start="74300" stop="74422"/>
              <exon start="74907" stop="75005"/>
              <exon start="75210" stop="75222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73866" stop="73959"/>
              <exon start="74082" stop="74201"/>
              <exon start="74300" stop="74422"/>
              <exon start="74907" stop="75005"/>
              <exon start="75210" stop="75266"/>
              <exon start="75450" stop="75496"/>
              <exon start="75617" stop="75760"/>
              <exon start="75856" stop="75971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74154" stop="74201"/>
              <exon start="74300" stop="74422"/>
              <exon start="74907" stop="75005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367598" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGGCCATTTAACAAGTTGAGAGAAAAGGCTTTGAAAGTTGCCATGGAACATATTCACTACGAGGACCAAACTAGTAGATACATTTGCATTGGATGTGTTGAAAAG : GTTTTATGTCTTATGGCTTGTTGGGTGGAAGATCCAAATTCAGAAGCATATAAACGCCACCTTGCTCGATTACCAGATTATTATTGGATATCTGAAGATGGTTTAAAATTTCAG : TCCTTTGGTTGTCAAACTTGGGATGCAGTATTTTCAATCCAAGCAATTTTATCAAGTGATGTGGCTGAAGAATTTGGGCCAACACTCAAAAAGGCAAATAATTTTCTAAAAGCATCACAG : GTGAGGGAGAATCCTAGTGGGGACTTTAAAAAAATGTATAGGCACATATCTAAAGGTGGTTGGCCATTTTCCATGCAAGATCATGGTTGGCAAGTCTCAGATTGCACTTCTGAAGGATTAAAG : TGTGCACTCTTATTTTCACAAATGCCTACACAACTTGTTGGGGAAAAACTCGATGTTGAGCGCTTATATGATGCAGTAAATGTTATTTTATCTCTCCAG : AGCGAAAATGGGGGTTTTCCAGCTTGGGAGCCTCAACATGCCTATCGTTGGTTGGAG : AAATTTAATCCAACTGAATTTTTTGAGGATACCATAATTGAACGAGA : GTATGTGGAATGCACTTCATCATCAATCCAAGCTTTATCATTATTTAAAAAGTTGCACCCTGGACATAGAAGGAAGGAAATTGATGTTGCAATTACAAAAGGTTTGCAATACATTGAAAATACACAAAATCCCGATGGCTCTTG : GACGGGTTGTTGGGGAATTTGTTATACATATGGAACATGGTTTGCTGTGGATGGATTAATAGCTTGTGGAAGAACCTATTCTACTAGTCATGCCCTTCAAAAAGCTTGTCAATTTT</gDNA_template>
            <first_frame> R  W  P  F  N  K  L  R  E  K  A  L  K  V  A  M  E  H  I  H  Y  E  D  Q  T  S  R  Y  I  C  I  G  C  V  E  K  :  V  L  C  L  M  A  C  W  V  E  D  P  N  S  E  A  Y  K  R  H  L  A  R  L  P  D  Y  Y  W  I  S  E  D  G  L  K  F  Q  :  S  F  G  C  Q  T  W  D  A  V  F  S  I  Q  A  I  L  S  S  D  V  A  E  E  F  G  P  T  L  K  K  A  N  N  F  L  K  A  S  Q  :  V  R  E  N  P  S  G  D  F  K  K  M  Y  R  H  I  S  K  G  G  W  P  F  S  M  Q  D  H  G  W  Q  V  S  D  C  T  S  E  G  L  K  :  C  A  L  L  F  S  Q  M  P  T  Q  L  V  G  E  K  L  D  V  E  R  L  Y  D  A  V  N  V  I  L  S  L  Q  :  S  E  N  G  G  F  P  A  W  E  P  Q  H  A  Y  R  W  L  E  :  K  F  N  P  T  E  F  F  E  D  T  I  I  E  R  E :   Y  V  E  C  T  S  S  S  I  Q  A  L  S  L  F  K  K  L  H  P  G  H  R  R  K  E  I  D  V  A  I  T  K  G  L  Q  Y  I  E  N  T  Q  N  P  D  G  S  W :   T  G  C  W  G  I  C  Y  T  Y  G  T  W  F  A  V  D  G  L  I  A  C  G  R  T  Y  S  T  S  H  A  L  Q  K  A  C  Q  F  </first_frame>
            <second_frame>  D  G  H  L  T  S  *  E  K  R  L  *  K  L  P  W  N  I  F  T  T  R  T  K  L  V  D  T  F  A  L  D  V  L  K  R :   F  Y  V  L  W  L  V  G  W  K  I  Q  I  Q  K  H  I  N  A  T  L  L  D  Y  Q  I  I  I  G  Y  L  K  M  V  *  N  F  S :   P  L  V  V  K  L  G  M  Q  Y  F  Q  S  K  Q  F  Y  Q  V  M  W  L  K  N  L  G  Q  H  S  K  R  Q  I  I  F  *  K  H  H  R :   *  G  R  I  L  V  G  T  L  K  K  C  I  G  T  Y  L  K  V  V  G  H  F  P  C  K  I  M  V  G  K  S  Q  I  A  L  L  K  D  *  S :   V  H  S  Y  F  H  K  C  L  H  N  L  L  G  K  N  S  M  L  S  A  Y  M  M  Q  *  M  L  F  Y  L  S  R :   A  K  M  G  V  F  Q  L  G  S  L  N  M  P  I  V  G  W  R :   N  L  I  Q  L  N  F  L  R  I  P  *  L  N  E   : S  M  W  N  A  L  H  H  Q  S  K  L  Y  H  Y  L  K  S  C  T  L  D  I  E  G  R  K  L  M  L  Q  L  Q  K  V  C  N  T  L  K  I  H  K  I  P  M  A  L   : G  R  V  V  G  E  F  V  I  H  M  E  H  G  L  L  W  M  D  *  *  L  V  E  E  P  I  L  L  V  M  P  F  K  K  L  V  N  F </second_frame>
            <third_frame>   M  A  I  *  Q  V  E  R  K  G  F  E  S  C  H  G  T  Y  S  L  R  G  P  N  *  *  I  H  L  H  W  M  C  *  K   : G  F  M  S  Y  G  L  L  G  G  R  S  K  F  R  S  I  *  T  P  P  C  S  I  T  R  L  L  L  D  I  *  R  W  F  K  I  S   : V  L  W  L  S  N  L  G  C  S  I  F  N  P  S  N  F  I  K  *  C  G  *  R  I  W  A  N  T  Q  K  G  K  *  F  S  K  S  I  T   : G  E  G  E  S  *  W  G  L  *  K  N  V  *  A  H  I  *  R  W  L  A  I  F  H  A  R  S  W  L  A  S  L  R  L  H  F  *  R  I  K   : V  C  T  L  I  F  T  N  A  Y  T  T  C  W  G  K  T  R  C  *  A  L  I  *  C  S  K  C  Y  F  I  S  P   : E  R  K  W  G  F  S  S  L  G  A  S  T  C  L  S  L  V  G   : E  I  *  S  N  *  I  F  *  G  Y  H  N  *  T  R  :  V  C  G  M  H  F  I  I  N  P  S  F  I  I  I  *  K  V  A  P  W  T  *  K  E  G  N  *  C  C  N  Y  K  R  F  A  I  H  *  K  Y  T  K  S  R  W  L  L  :  D  G  L  L  G  N  L  L  Y  I  W  N  M  V  C  C  G  W  I  N  S  L  W  K  N  L  F  Y  *  S  C  P  S  K  S  L  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71209" stop="71316"/>
                    <exon start="73846" stop="73959"/>
                    <exon start="74082" stop="74201"/>
                    <exon start="74300" stop="74422"/>
                    <exon start="74907" stop="75005"/>
                    <exon start="75210" stop="75266"/>
                    <exon start="75450" stop="75496"/>
                    <exon start="75617" stop="75760"/>
                    <exon start="75856" stop="75970"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RWPFNKLREKALKVAMEHIHYEDQTSRYICIGCVEKVLCLMACWVEDPNSEAYKRHLARLPDYYWISEDGLKFQSFGCQTWDAVFSIQAILSSDVAEEFGPTLKKANNFLKASQVRENPSGDFKKMYRHISKGGWPFSMQDHGWQVSDCTSEGLKCALLFSQMPTQLVGEKLDVERLYDAVNVILSLQSENGGFPAWEPQHAYRWLEKFNPTEFFEDTIIEREYVECTSSSIQALSLFKKLHPGHRRKEIDVAITKGLQYIENTQNPDGSWTGCWGICYTYGTWFAVDGLIACGRTYSTSHALQKACQF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71817" e_stop="72252"/>
            <exon e_start="72335" e_stop="72377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.000" e_score="0.950"/>
          <exon-only e_score="0.884"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="71817" e_stop="72252" e_length="436"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72253" i_stop="72334" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.884">
            <gDNA_exon_boundary e_start="72335" e_stop="72377" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71817" stop="72252"/>
              <exon start="72335" stop="72376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72059" stop="72252"/>
              <exon start="72335" stop="72377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTCCAAGCTAGAAACATTAGCTCACCCTGAATTTCCGGTGTAGTGAAGACTGACTTGAATTATTGTTGAGTTGAAGACGACGGCACGTTTGCTGCACTCCACAAATAACAAAGAAGAAAACATAAAAGTAGGGGGTCAGTACAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAGTCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCG : GTTCGTGACACCCGATCCCCTAAATCTATGTGTCGGTTCGTGA</gDNA_template>
            <first_frame> S  P  S  *  K  H  *  L  T  L  N  F  R  C  S  E  D  *  L  E  L  L  L  S  *  R  R  R  H  V  C  C  T  P  Q  I  T  K  K  K  T  *  K  *  G  V  S  T  N  T  G  T  E  *  I  S  S  A  N  S  K  *  K  T  I  Y  T  K  *  Y  H  K  V  N  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V   : G  S  *  H  P  I  P  *  I  Y  V  S  V  R   </first_frame>
            <second_frame>  V  Q  A  R  N  I  S  S  P  *  I  S  G  V  V  K  T  D  L  N  Y  C  *  V  E  D  D  G  T  F  A  A  L  H  K  *  Q  R  R  K  H  K  S  R  G  S  V  Q  T  R  V  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  :  V  R  D  T  R  S  P  K  S  M  C  R  F  V  </second_frame>
            <third_frame>   S  K  L  E  T  L  A  H  P  E  F  P  V  *  *  R  L  T  *  I  I  V  E  L  K  T  T  A  R  L  L  H  S  T  N  N  K  E  E  N  I  K  V  G  G  Q  Y  K  H  G  Y  *  V  D  I  I  G  Q  L  K  I  E  N  N  I  Y  Q  V  I  S  *  S  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R :   F  V  T  P  D  P  L  N  L  C  V  G  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0033D17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="72834" PGL_stop="72433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72834" e_stop="72433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="72834" e_stop="72433" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72834" stop="72433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCTTCAGTGGAGGAAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTAATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGACCTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGAATCAGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> E  S  S  V  E  E  G  Y  G  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  G  S  I  V  N  P  A  M  C  L  I  V  C  M  H  E  R  D  Y  I  I  V  I  I  L  S  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  D  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  W  K  E  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  N  Q  V  S  R  T  D  T </first_frame>
            <second_frame>  N  L  Q  W  R  K  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  V  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  M  T  *  S  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  G  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  R  C  H  E  P  T   </second_frame>
            <third_frame>   I  F  S  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  W  *  Y  C  K  P  C  Y  V  L  N  C  M  H  A  *  T  *  L  Y  N  C  N  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  A  L  V  R  E  K  A  *  *  P  K  V  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  M  E  G  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  E  S  G  V  T  N  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0033D17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="87941" PGL_stop="76544"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87941" e_stop="87835"/>
            <exon e_start="87747" e_stop="87694"/>
            <exon e_start="87396" e_stop="87291"/>
            <exon e_start="84891" e_stop="84885"/>
            <exon e_start="84741" e_stop="84657"/>
            <exon e_start="79851" e_stop="79331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.356" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87941" e_stop="87835" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87747" e_stop="87694" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87396" e_stop="87291" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84891" e_stop="84885" e_length="7"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84741" e_stop="84657" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.356">
            <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79851" e_stop="79331" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87941" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87938" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87919" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87909" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87893" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87890" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87862" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87723" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79774" stop="79339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCACTCGCCTGTTTTCAGAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT : GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG : GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG : GAAGAAC : ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG : ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAATTACTCG</gDNA_template>
            <first_frame> F  S  L  A  C  F  Q  K  V  E  L  Y  S  R  A  S  V  F  V  S  A  L  G  I  A  V  E  K  W  R  T  K  Q  I  E  L :   L  L  L  K  F  R  V  E  *  *  R  L  P  V  N  *  S  R :   F  K  P  R  F  E  T  K  K  P  R  R  S  V  L  I  *  H  W  R  N  *  N  S  C  L  M  T  L  I  H  T  K  P  *  :  E  E   : H  L  S  *  S  Q  R  L  C  *  *  T  S  K  S  K  N  S  R  M  V  K  L  Q  L  P  L  C  R :   L  L  K  S  I  W  K  S  T  W  R  R  W  R  I  T  L  G  S  S  C  N  K  I  L  V  L  L  V  R  *  *  P  C  L  *  R  R  Y  L  L  L  L  K  F  L  L  S  T  L  S  L  E  E  K  K  N  D  S  F  S  K  I  F  W  N  F  K  F  *  V  K  N  T  L  C  T  G  C  M  R  N  L  S  T  *  F  L  A  R  C  C  V  G  R  K  I  V  M  L  A  S  I  G  P  G  I  G  L  E  T  T  A  S  Q  V  V  K  F  I  R  N  V  V  Y  *  L  S  L  T  L  L  R  L  E  F  P  N  S  *  Y  L  M  V  G  C  I  L  S  A  N  G  S  S  S  K  V  F  E  F  D  *  R  Y  I  V  F  K  I  G  E  L  L  </first_frame>
            <second_frame>  S  H  S  P  V  F  R  K  *  N  Y  I  L  G  L  Q  F  L  Y  L  H  L  E  L  Q  L  K  N  G  G  R  S  K  *  N   : C  F  Y  *  N  S  G  S  N  D  R  D  Y  R  *  I  E  A   : G  S  N  P  D  S  K  Q  R  N  R  E  E  A  C  L  F  D  I  G  G  T  E  T  A  V  *  *  H  *  Y  I  Q  S  H  R :   K  N  :  I  C  L  R  A  K  G  C  V  N  E  R  A  R  A  K  T  Q  G  W  *  N  C  N  C  L  F  A   : D  F  *  R  V  F  G  K  A  H  G  G  G  G  E  *  P  *  G  A  L  A  T  R  S  W  S  C  S  S  D  N  D  H  V  C  S  V  D  I  F  C  F  *  S  S  F  C  Q  L  F  P  W  K  K  K  K  T  I  A  S  Q  R  F  F  G  T  S  N  S  R  *  R  I  H  S  V  L  A  V  *  G  T  Y  P  P  D  F  W  H  A  A  V  L  V  V  K  S  *  C  L  L  L  L  D  L  E  L  V  *  R  L  L  R  V  K  S  *  N  S  L  E  M  L  C  I  S  F  P  *  H  F  C  G  L  S  F  Q  I  V  N  T  *  W  L  D  V  F  F  L  Q  M  V  R  Q  V  R  F  L  N  L  I  E  D  I  L  S  S  K  L  E  N  Y  S </second_frame>
            <third_frame>   L  T  R  L  F  S  E  S  R  I  I  F  *  G  F  S  F  C  I  C  T  W  N  C  S  *  K  M  A  D  E  A  N  R  T  :  A  F  I  E  I  Q  G  R  M  I  E  T  T  G  K  L  K  Q  :  V  Q  T  Q  I  R  N  K  E  T  E  K  K  R  A  Y  L  T  L  E  E  L  K  Q  L  S  D  D  T  N  T  Y  K  A  I   : G  R  T :   F  V  L  E  P  K  A  V  L  M  N  E  Q  E  Q  K  L  K  D  G  E  T  A  I  A  S  L  Q  :  T  S  K  E  Y  L  E  K  H  M  A  E  V  E  N  N  L  R  E  L  L  Q  Q  D  P  G  L  A  R  Q  I  M  T  M  S  V  A  *  I  S  S  A  S  E  V  P  F  V  N  S  F  L  G  R  K  K  K  R  *  L  L  K  D  F  L  E  L  Q  I  L  G  K  E  Y  T  L  Y  W  L  Y  E  E  L  I  H  L  I  S  G  T  L  L  C  W  S  *  N  R  N  A  C  F  Y  W  T  W  N  W  S  R  D  Y  C  E  S  S  R  K  I  H  *  K  C  C  V  L  A  F  L  N  T  F  A  A  *  V  S  K  *  L  I  L  N  G  W  M  Y  S  F  C  K  W  F  V  K  *  G  F  *  I  *  L  K  I  Y  C  L  Q  N  W  R  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87861" stop="87835"/>
                    <exon start="87747" stop="87694"/>
                    <exon start="87396" stop="87291"/>
                    <exon start="84891" stop="84885"/>
                    <exon start="84741" stop="84657"/>
                    <exon start="79851" stop="79738"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMADEANRTAFIEIQGRMIETTGKLKQVQTQIRNKETEKKRAYLTLEELKQLSDDTNTYKAIGRTFVLEPKAVLMNEQEQKLKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLARQIMTMSVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87941" e_stop="87835"/>
            <exon e_start="87747" e_stop="87694"/>
            <exon e_start="87396" e_stop="87291"/>
            <exon e_start="84891" e_stop="84885"/>
            <exon e_start="84741" e_stop="84657"/>
            <exon e_start="79851" e_stop="79338"/>
            <exon e_start="76577" e_stop="76549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.356" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.382" e_score="1.000"/>
          <exon-only e_score="0.724"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87941" e_stop="87835" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87747" e_stop="87694" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87396" e_stop="87291" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84891" e_stop="84885" e_length="7"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84741" e_stop="84657" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.356">
            <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79851" e_stop="79338" e_length="514"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.382">
            <gDNA_intron_boundary i_start="79337" i_stop="76578" i_length="2760"/>
          </intron>
          <exon e_serial="7" e_score="0.724">
            <gDNA_exon_boundary e_start="76577" e_stop="76549" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87941" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87938" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87919" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87909" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87890" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87862" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87723" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79338"/>
              <exon start="76577" stop="76549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79774" stop="79339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCACTCGCCTGTTTTCAGAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT : GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG : GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG : GAAGAAC : ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG : ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAA : AGAGGGAGAAAAAGCAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> F  S  L  A  C  F  Q  K  V  E  L  Y  S  R  A  S  V  F  V  S  A  L  G  I  A  V  E  K  W  R  T  K  Q  I  E  L :   L  L  L  K  F  R  V  E  *  *  R  L  P  V  N  *  S  R :   F  K  P  R  F  E  T  K  K  P  R  R  S  V  L  I  *  H  W  R  N  *  N  S  C  L  M  T  L  I  H  T  K  P  *  :  E  E   : H  L  S  *  S  Q  R  L  C  *  *  T  S  K  S  K  N  S  R  M  V  K  L  Q  L  P  L  C  R :   L  L  K  S  I  W  K  S  T  W  R  R  W  R  I  T  L  G  S  S  C  N  K  I  L  V  L  L  V  R  *  *  P  C  L  *  R  R  Y  L  L  L  L  K  F  L  L  S  T  L  S  L  E  E  K  K  N  D  S  F  S  K  I  F  W  N  F  K  F  *  V  K  N  T  L  C  T  G  C  M  R  N  L  S  T  *  F  L  A  R  C  C  V  G  R  K  I  V  M  L  A  S  I  G  P  G  I  G  L  E  T  T  A  S  Q  V  V  K  F  I  R  N  V  V  Y  *  L  S  L  T  L  L  R  L  E  F  P  N  S  *  Y  L  M  V  G  C  I  L  S  A  N  G  S  S  S  K  V  F  E  F  D  *  R  Y  I  V  F  K  I  G  E  :  R  G  R  K  S  K  K  K  K   </first_frame>
            <second_frame>  S  H  S  P  V  F  R  K  *  N  Y  I  L  G  L  Q  F  L  Y  L  H  L  E  L  Q  L  K  N  G  G  R  S  K  *  N   : C  F  Y  *  N  S  G  S  N  D  R  D  Y  R  *  I  E  A   : G  S  N  P  D  S  K  Q  R  N  R  E  E  A  C  L  F  D  I  G  G  T  E  T  A  V  *  *  H  *  Y  I  Q  S  H  R :   K  N  :  I  C  L  R  A  K  G  C  V  N  E  R  A  R  A  K  T  Q  G  W  *  N  C  N  C  L  F  A   : D  F  *  R  V  F  G  K  A  H  G  G  G  G  E  *  P  *  G  A  L  A  T  R  S  W  S  C  S  S  D  N  D  H  V  C  S  V  D  I  F  C  F  *  S  S  F  C  Q  L  F  P  W  K  K  K  K  T  I  A  S  Q  R  F  F  G  T  S  N  S  R  *  R  I  H  S  V  L  A  V  *  G  T  Y  P  P  D  F  W  H  A  A  V  L  V  V  K  S  *  C  L  L  L  L  D  L  E  L  V  *  R  L  L  R  V  K  S  *  N  S  L  E  M  L  C  I  S  F  P  *  H  F  C  G  L  S  F  Q  I  V  N  T  *  W  L  D  V  F  F  L  Q  M  V  R  Q  V  R  F  L  N  L  I  E  D  I  L  S  S  K  L  E  K :   E  G  E  K  A  K  K  K  K  </second_frame>
            <third_frame>   L  T  R  L  F  S  E  S  R  I  I  F  *  G  F  S  F  C  I  C  T  W  N  C  S  *  K  M  A  D  E  A  N  R  T  :  A  F  I  E  I  Q  G  R  M  I  E  T  T  G  K  L  K  Q  :  V  Q  T  Q  I  R  N  K  E  T  E  K  K  R  A  Y  L  T  L  E  E  L  K  Q  L  S  D  D  T  N  T  Y  K  A  I   : G  R  T :   F  V  L  E  P  K  A  V  L  M  N  E  Q  E  Q  K  L  K  D  G  E  T  A  I  A  S  L  Q  :  T  S  K  E  Y  L  E  K  H  M  A  E  V  E  N  N  L  R  E  L  L  Q  Q  D  P  G  L  A  R  Q  I  M  T  M  S  V  A  *  I  S  S  A  S  E  V  P  F  V  N  S  F  L  G  R  K  K  K  R  *  L  L  K  D  F  L  E  L  Q  I  L  G  K  E  Y  T  L  Y  W  L  Y  E  E  L  I  H  L  I  S  G  T  L  L  C  W  S  *  N  R  N  A  C  F  Y  W  T  W  N  W  S  R  D  Y  C  E  S  S  R  K  I  H  *  K  C  C  V  L  A  F  L  N  T  F  A  A  *  V  S  K  *  L  I  L  N  G  W  M  Y  S  F  C  K  W  F  V  K  *  G  F  *  I  *  L  K  I  Y  C  L  Q  N  W  R   : K  R  E  K  K  Q  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87861" stop="87835"/>
                    <exon start="87747" stop="87694"/>
                    <exon start="87396" stop="87291"/>
                    <exon start="84891" stop="84885"/>
                    <exon start="84741" stop="84657"/>
                    <exon start="79851" stop="79738"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMADEANRTAFIEIQGRMIETTGKLKQVQTQIRNKETEKKRAYLTLEELKQLSDDTNTYKAIGRTFVLEPKAVLMNEQEQKLKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLARQIMTMSVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="87941" e_stop="87835"/>
            <exon e_start="87747" e_stop="87694"/>
            <exon e_start="87396" e_stop="87291"/>
            <exon e_start="84891" e_stop="84885"/>
            <exon e_start="84741" e_stop="84657"/>
            <exon e_start="79851" e_stop="79368"/>
            <exon e_start="79314" e_stop="79306"/>
            <exon e_start="76577" e_stop="76544"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.356" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.484" acc_prob="0.382" e_score="0.889"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87941" e_stop="87835" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87747" e_stop="87694" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87396" e_stop="87291" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84891" e_stop="84885" e_length="7"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84741" e_stop="84657" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.356">
            <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79851" e_stop="79368" e_length="484"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.876">
            <gDNA_intron_boundary i_start="79367" i_stop="79315" i_length="53"/>
          </intron>
          <exon e_serial="7" e_score="0.889">
            <gDNA_exon_boundary e_start="79314" e_stop="79306" e_length="9"/>
          </exon>
          <intron i_serial="7" don_prob="0.484" acc_prob="0.382">
            <gDNA_intron_boundary i_start="79305" i_stop="76578" i_length="2728"/>
          </intron>
          <exon e_serial="8" e_score="0.706">
            <gDNA_exon_boundary e_start="76577" e_stop="76544" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87941" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87938" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87919" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87909" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87890" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87862" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79827" stop="79368"/>
              <exon start="79314" stop="79306"/>
              <exon start="76577" stop="76544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257717" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCACTCGCCTGTTTTCAGAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT : GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG : GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG : GAAGAAC : ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG : ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGAT : TGGAAAAAA : AGAGGGAGAAAAAGCAAAAAAAAAAAAAAGGAGA</gDNA_template>
            <first_frame> F  S  L  A  C  F  Q  K  V  E  L  Y  S  R  A  S  V  F  V  S  A  L  G  I  A  V  E  K  W  R  T  K  Q  I  E  L :   L  L  L  K  F  R  V  E  *  *  R  L  P  V  N  *  S  R :   F  K  P  R  F  E  T  K  K  P  R  R  S  V  L  I  *  H  W  R  N  *  N  S  C  L  M  T  L  I  H  T  K  P  *  :  E  E   : H  L  S  *  S  Q  R  L  C  *  *  T  S  K  S  K  N  S  R  M  V  K  L  Q  L  P  L  C  R :   L  L  K  S  I  W  K  S  T  W  R  R  W  R  I  T  L  G  S  S  C  N  K  I  L  V  L  L  V  R  *  *  P  C  L  *  R  R  Y  L  L  L  L  K  F  L  L  S  T  L  S  L  E  E  K  K  N  D  S  F  S  K  I  F  W  N  F  K  F  *  V  K  N  T  L  C  T  G  C  M  R  N  L  S  T  *  F  L  A  R  C  C  V  G  R  K  I  V  M  L  A  S  I  G  P  G  I  G  L  E  T  T  A  S  Q  V  V  K  F  I  R  N  V  V  Y  *  L  S  L  T  L  L  R  L  E  F  P  N  S  *  Y  L  M  V  G  C  I  L  S  A  N  G  S  S  S  K  V  F  E  F  D  :  W  K  K  :  R  G  R  K  S  K  K  K  K  K  E  </first_frame>
            <second_frame>  S  H  S  P  V  F  R  K  *  N  Y  I  L  G  L  Q  F  L  Y  L  H  L  E  L  Q  L  K  N  G  G  R  S  K  *  N   : C  F  Y  *  N  S  G  S  N  D  R  D  Y  R  *  I  E  A   : G  S  N  P  D  S  K  Q  R  N  R  E  E  A  C  L  F  D  I  G  G  T  E  T  A  V  *  *  H  *  Y  I  Q  S  H  R :   K  N  :  I  C  L  R  A  K  G  C  V  N  E  R  A  R  A  K  T  Q  G  W  *  N  C  N  C  L  F  A   : D  F  *  R  V  F  G  K  A  H  G  G  G  G  E  *  P  *  G  A  L  A  T  R  S  W  S  C  S  S  D  N  D  H  V  C  S  V  D  I  F  C  F  *  S  S  F  C  Q  L  F  P  W  K  K  K  K  T  I  A  S  Q  R  F  F  G  T  S  N  S  R  *  R  I  H  S  V  L  A  V  *  G  T  Y  P  P  D  F  W  H  A  A  V  L  V  V  K  S  *  C  L  L  L  L  D  L  E  L  V  *  R  L  L  R  V  K  S  *  N  S  L  E  M  L  C  I  S  F  P  *  H  F  C  G  L  S  F  Q  I  V  N  T  *  W  L  D  V  F  F  L  Q  M  V  R  Q  V  R  F  L  N  L  I :   G  K  K :   E  G  E  K  A  K  K  K  K  R  R </second_frame>
            <third_frame>   L  T  R  L  F  S  E  S  R  I  I  F  *  G  F  S  F  C  I  C  T  W  N  C  S  *  K  M  A  D  E  A  N  R  T  :  A  F  I  E  I  Q  G  R  M  I  E  T  T  G  K  L  K  Q  :  V  Q  T  Q  I  R  N  K  E  T  E  K  K  R  A  Y  L  T  L  E  E  L  K  Q  L  S  D  D  T  N  T  Y  K  A  I   : G  R  T :   F  V  L  E  P  K  A  V  L  M  N  E  Q  E  Q  K  L  K  D  G  E  T  A  I  A  S  L  Q  :  T  S  K  E  Y  L  E  K  H  M  A  E  V  E  N  N  L  R  E  L  L  Q  Q  D  P  G  L  A  R  Q  I  M  T  M  S  V  A  *  I  S  S  A  S  E  V  P  F  V  N  S  F  L  G  R  K  K  K  R  *  L  L  K  D  F  L  E  L  Q  I  L  G  K  E  Y  T  L  Y  W  L  Y  E  E  L  I  H  L  I  S  G  T  L  L  C  W  S  *  N  R  N  A  C  F  Y  W  T  W  N  W  S  R  D  Y  C  E  S  S  R  K  I  H  *  K  C  C  V  L  A  F  L  N  T  F  A  A  *  V  S  K  *  L  I  L  N  G  W  M  Y  S  F  C  K  W  F  V  K  *  G  F  *  I  *   : L  E  K   : K  R  E  K  K  Q  K  K  K  K  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87861" stop="87835"/>
                    <exon start="87747" stop="87694"/>
                    <exon start="87396" stop="87291"/>
                    <exon start="84891" stop="84885"/>
                    <exon start="84741" stop="84657"/>
                    <exon start="79851" stop="79738"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMADEANRTAFIEIQGRMIETTGKLKQVQTQIRNKETEKKRAYLTLEELKQLSDDTNTYKAIGRTFVLEPKAVLMNEQEQKLKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLARQIMTMSVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="87941" e_stop="87835"/>
            <exon e_start="87747" e_stop="87694"/>
            <exon e_start="87396" e_stop="87291"/>
            <exon e_start="84891" e_stop="84885"/>
            <exon e_start="84741" e_stop="84657"/>
            <exon e_start="79851" e_stop="79432"/>
            <exon e_start="79314" e_stop="79306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.356" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.876" e_score="0.883"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87941" e_stop="87835" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87747" e_stop="87694" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87396" e_stop="87291" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84891" e_stop="84885" e_length="7"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84741" e_stop="84657" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.356">
            <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805"/>
          </intron>
          <exon e_serial="6" e_score="0.883">
            <gDNA_exon_boundary e_start="79851" e_stop="79432" e_length="420"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.876">
            <gDNA_intron_boundary i_start="79431" i_stop="79315" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="0.778">
            <gDNA_exon_boundary e_start="79314" e_stop="79306" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87941" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87938" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87919" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87916" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87909" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87891" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79432"/>
              <exon start="79314" stop="79306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411043" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87890" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87862" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCACTCGCCTGTTTTCAGAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT : GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG : GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG : GAAGAAC : ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG : ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTA : TGGAAAAAA</gDNA_template>
            <first_frame> F  S  L  A  C  F  Q  K  V  E  L  Y  S  R  A  S  V  F  V  S  A  L  G  I  A  V  E  K  W  R  T  K  Q  I  E  L :   L  L  L  K  F  R  V  E  *  *  R  L  P  V  N  *  S  R :   F  K  P  R  F  E  T  K  K  P  R  R  S  V  L  I  *  H  W  R  N  *  N  S  C  L  M  T  L  I  H  T  K  P  *  :  E  E   : H  L  S  *  S  Q  R  L  C  *  *  T  S  K  S  K  N  S  R  M  V  K  L  Q  L  P  L  C  R :   L  L  K  S  I  W  K  S  T  W  R  R  W  R  I  T  L  G  S  S  C  N  K  I  L  V  L  L  V  R  *  *  P  C  L  *  R  R  Y  L  L  L  L  K  F  L  L  S  T  L  S  L  E  E  K  K  N  D  S  F  S  K  I  F  W  N  F  K  F  *  V  K  N  T  L  C  T  G  C  M  R  N  L  S  T  *  F  L  A  R  C  C  V  G  R  K  I  V  M  L  A  S  I  G  P  G  I  G  L  E  T  T  A  S  Q  V  V  K  F  I  R  N  V  V  Y  *  L  S  L  T  L  L  R  L  E  F  P  N  S  Y :   G  K   </first_frame>
            <second_frame>  S  H  S  P  V  F  R  K  *  N  Y  I  L  G  L  Q  F  L  Y  L  H  L  E  L  Q  L  K  N  G  G  R  S  K  *  N   : C  F  Y  *  N  S  G  S  N  D  R  D  Y  R  *  I  E  A   : G  S  N  P  D  S  K  Q  R  N  R  E  E  A  C  L  F  D  I  G  G  T  E  T  A  V  *  *  H  *  Y  I  Q  S  H  R :   K  N  :  I  C  L  R  A  K  G  C  V  N  E  R  A  R  A  K  T  Q  G  W  *  N  C  N  C  L  F  A   : D  F  *  R  V  F  G  K  A  H  G  G  G  G  E  *  P  *  G  A  L  A  T  R  S  W  S  C  S  S  D  N  D  H  V  C  S  V  D  I  F  C  F  *  S  S  F  C  Q  L  F  P  W  K  K  K  K  T  I  A  S  Q  R  F  F  G  T  S  N  S  R  *  R  I  H  S  V  L  A  V  *  G  T  Y  P  P  D  F  W  H  A  A  V  L  V  V  K  S  *  C  L  L  L  L  D  L  E  L  V  *  R  L  L  R  V  K  S  *  N  S  L  E  M  L  C  I  S  F  P  *  H  F  C  G  L  S  F  Q  I  V   : M  E  K  </second_frame>
            <third_frame>   L  T  R  L  F  S  E  S  R  I  I  F  *  G  F  S  F  C  I  C  T  W  N  C  S  *  K  M  A  D  E  A  N  R  T  :  A  F  I  E  I  Q  G  R  M  I  E  T  T  G  K  L  K  Q  :  V  Q  T  Q  I  R  N  K  E  T  E  K  K  R  A  Y  L  T  L  E  E  L  K  Q  L  S  D  D  T  N  T  Y  K  A  I   : G  R  T :   F  V  L  E  P  K  A  V  L  M  N  E  Q  E  Q  K  L  K  D  G  E  T  A  I  A  S  L  Q  :  T  S  K  E  Y  L  E  K  H  M  A  E  V  E  N  N  L  R  E  L  L  Q  Q  D  P  G  L  A  R  Q  I  M  T  M  S  V  A  *  I  S  S  A  S  E  V  P  F  V  N  S  F  L  G  R  K  K  K  R  *  L  L  K  D  F  L  E  L  Q  I  L  G  K  E  Y  T  L  Y  W  L  Y  E  E  L  I  H  L  I  S  G  T  L  L  C  W  S  *  N  R  N  A  C  F  Y  W  T  W  N  W  S  R  D  Y  C  E  S  S  R  K  I  H  *  K  C  C  V  L  A  F  L  N  T  F  A  A  *  V  S  K  *  L  :  W  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87861" stop="87835"/>
                    <exon start="87747" stop="87694"/>
                    <exon start="87396" stop="87291"/>
                    <exon start="84891" stop="84885"/>
                    <exon start="84741" stop="84657"/>
                    <exon start="79851" stop="79738"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMADEANRTAFIEIQGRMIETTGKLKQVQTQIRNKETEKKRAYLTLEELKQLSDDTNTYKAIGRTFVLEPKAVLMNEQEQKLKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLARQIMTMSVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="87941" e_stop="87835"/>
            <exon e_start="87747" e_stop="87694"/>
            <exon e_start="87396" e_stop="87291"/>
            <exon e_start="84891" e_stop="84885"/>
            <exon e_start="84741" e_stop="84657"/>
            <exon e_start="79851" e_stop="79751"/>
            <exon e_start="79640" e_stop="79333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.356" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87941" e_stop="87835" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87834" i_stop="87748" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87747" e_stop="87694" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87693" i_stop="87397" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87396" e_stop="87291" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84891" e_stop="84885" e_length="7"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84884" i_stop="84742" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84741" e_stop="84657" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.356">
            <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79851" e_stop="79751" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79750" i_stop="79641" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="79640" e_stop="79333" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87941" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87938" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87921" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79751"/>
              <exon start="79640" stop="79333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87921" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79751"/>
              <exon start="79640" stop="79390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87920" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84657"/>
              <exon start="79851" stop="79822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87890" stop="87835"/>
              <exon start="87747" stop="87694"/>
              <exon start="87396" stop="87291"/>
              <exon start="84891" stop="84885"/>
              <exon start="84741" stop="84673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCACTCGCCTGTTTTCAGAAAGTAGAATTATATTCTAGGGCTTCAGTTTTTGTATCTGCACTTGGAATTGCAGTTGAAAAATGGCGGACGAAGCAAATAGAACT : GCTTTTATTGAAATTCAGGGTCGAATGATAGAGACTACCGGTAAATTGAAGCAG : GTTCAAACCCAGATTCGAAACAAAGAAACCGAGAAGAAGCGTGCTTATTTGACATTGGAGGAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG : GAAGAAC : ATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG : ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCAT : GTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGATTGAAGATATATTGTCTTCAAAATTGGAGAATTACT</gDNA_template>
            <first_frame> F  S  L  A  C  F  Q  K  V  E  L  Y  S  R  A  S  V  F  V  S  A  L  G  I  A  V  E  K  W  R  T  K  Q  I  E  L :   L  L  L  K  F  R  V  E  *  *  R  L  P  V  N  *  S  R :   F  K  P  R  F  E  T  K  K  P  R  R  S  V  L  I  *  H  W  R  N  *  N  S  C  L  M  T  L  I  H  T  K  P  *  :  E  E   : H  L  S  *  S  Q  R  L  C  *  *  T  S  K  S  K  N  S  R  M  V  K  L  Q  L  P  L  C  R :   L  L  K  S  I  W  K  S  T  W  R  R  W  R  I  T  L  G  S  S  C  N  K  I  L  V  L  L  V  R  *  *  P   : C  K  E  Y  T  L  Y  W  L  Y  E  E  L  I  H  L  I  S  G  T  L  L  C  W  S  *  N  R  N  A  C  F  Y  W  T  W  N  W  S  R  D  Y  C  E  S  S  R  K  I  H  *  K  C  C  V  L  A  F  L  N  T  F  A  A  *  V  S  K  *  L  I  L  N  G  W  M  Y  S  F  C  K  W  F  V  K  *  G  F  *  I  *  L  K  I  Y  C  L  Q  N  W  R  I  T </first_frame>
            <second_frame>  S  H  S  P  V  F  R  K  *  N  Y  I  L  G  L  Q  F  L  Y  L  H  L  E  L  Q  L  K  N  G  G  R  S  K  *  N   : C  F  Y  *  N  S  G  S  N  D  R  D  Y  R  *  I  E  A   : G  S  N  P  D  S  K  Q  R  N  R  E  E  A  C  L  F  D  I  G  G  T  E  T  A  V  *  *  H  *  Y  I  Q  S  H  R :   K  N  :  I  C  L  R  A  K  G  C  V  N  E  R  A  R  A  K  T  Q  G  W  *  N  C  N  C  L  F  A   : D  F  *  R  V  F  G  K  A  H  G  G  G  G  E  *  P  *  G  A  L  A  T  R  S  W  S  C  S  S  D  N  D  H  :  V  K  N  T  L  C  T  G  C  M  R  N  L  S  T  *  F  L  A  R  C  C  V  G  R  K  I  V  M  L  A  S  I  G  P  G  I  G  L  E  T  T  A  S  Q  V  V  K  F  I  R  N  V  V  Y  *  L  S  L  T  L  L  R  L  E  F  P  N  S  *  Y  L  M  V  G  C  I  L  S  A  N  G  S  S  S  K  V  F  E  F  D  *  R  Y  I  V  F  K  I  G  E  L   </second_frame>
            <third_frame>   L  T  R  L  F  S  E  S  R  I  I  F  *  G  F  S  F  C  I  C  T  W  N  C  S  *  K  M  A  D  E  A  N  R  T  :  A  F  I  E  I  Q  G  R  M  I  E  T  T  G  K  L  K  Q  :  V  Q  T  Q  I  R  N  K  E  T  E  K  K  R  A  Y  L  T  L  E  E  L  K  Q  L  S  D  D  T  N  T  Y  K  A  I   : G  R  T :   F  V  L  E  P  K  A  V  L  M  N  E  Q  E  Q  K  L  K  D  G  E  T  A  I  A  S  L  Q  :  T  S  K  E  Y  L  E  K  H  M  A  E  V  E  N  N  L  R  E  L  L  Q  Q  D  P  G  L  A  R  Q  I  M  T  M :   *  R  I  H  S  V  L  A  V  *  G  T  Y  P  P  D  F  W  H  A  A  V  L  V  V  K  S  *  C  L  L  L  L  D  L  E  L  V  *  R  L  L  R  V  K  S  *  N  S  L  E  M  L  C  I  S  F  P  *  H  F  C  G  L  S  F  Q  I  V  N  T  *  W  L  D  V  F  F  L  Q  M  V  R  Q  V  R  F  L  N  L  I  E  D  I  L  S  S  K  L  E  N  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87861" stop="87835"/>
                    <exon start="87747" stop="87694"/>
                    <exon start="87396" stop="87291"/>
                    <exon start="84891" stop="84885"/>
                    <exon start="84741" stop="84657"/>
                    <exon start="79851" stop="79751"/>
                    <exon start="79640" stop="79637"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMADEANRTAFIEIQGRMIETTGKLKQVQTQIRNKETEKKRAYLTLEELKQLSDDTNTYKAIGRTFVLEPKAVLMNEQEQKLKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLARQIMTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="87336" e_stop="87291"/>
            <exon e_start="84891" e_stop="84657"/>
            <exon e_start="79851" e_stop="79368"/>
            <exon e_start="79314" e_stop="79306"/>
            <exon e_start="76577" e_stop="76544"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.356" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.484" acc_prob="0.382" e_score="0.889"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87336" e_stop="87291" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87290" i_stop="84892" i_length="2399"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84891" e_stop="84657" e_length="235"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.356">
            <gDNA_intron_boundary i_start="84656" i_stop="79852" i_length="4805"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79851" e_stop="79368" e_length="484"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.876">
            <gDNA_intron_boundary i_start="79367" i_stop="79315" i_length="53"/>
          </intron>
          <exon e_serial="4" e_score="0.889">
            <gDNA_exon_boundary e_start="79314" e_stop="79306" e_length="9"/>
          </exon>
          <intron i_serial="4" don_prob="0.484" acc_prob="0.382">
            <gDNA_intron_boundary i_start="79305" i_stop="76578" i_length="2728"/>
          </intron>
          <exon e_serial="5" e_score="0.706">
            <gDNA_exon_boundary e_start="76577" e_stop="76544" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87336" stop="87291"/>
              <exon start="84891" stop="84657"/>
              <exon start="79851" stop="79616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79827" stop="79368"/>
              <exon start="79314" stop="79306"/>
              <exon start="76577" stop="76544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257717" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACTGAAACAGCTGTCTGATGACACTAATACATACAAAGCCATAG : GAAGAACGTAAGTTTTGAACTGAAGTCTATCGTGTTGCTGTTATCTGAAAAAAGGAAAAGGATATGTGCATCATATACATTATTGACCTGGAATTTTCAAATTTTTCTACTTTTGTACTTATCTCACTCAGAACAATCTTTTATGTGCAGATTTGTCTTAGAGCCAAAGGCTGTGTTAATGAACGAGCAAGAGCAAAAACTCAAGGATGGTGAAACTGCAATTGCCTCTTTGCAG : ACTTCTAAAGAGTATTTGGAAAAGCACATGGCGGAGGTGGAGAATAACCTTAGGGAGCTCTTGCAACAAGATCCTGGTCTTGCTCGTCAGATAATGACCATGTCTGTAGCGTAGATATCTTCTGCTTCTGAAGTTCCTTTTGTCAACTCTTTCCTTGGAAGAAAAAAAAAACGATAGCTTCTCAAAGATTTTTTGGAACTTCAAATTCTAGGTAAAGAATACACTCTGTACTGGCTGTATGAGGAACTTATCCACCTGATTTCTGGCACGCTGCTGTGTTGGTCGTAAAATCGTAATGCTTGCTTCTATTGGACCTGGAATTGGTCTAGAGACTACTGCGAGTCAAGTCGTAAAATTCATTAGAAATGTTGTGTATTAGCTTTCCTTAACACTTTTGCGGCTTGAGTTTCCAAATAGTTAATACTTAATGGTTGGATGTATTCTTTCTGCAAATGGTTCGTCAAGTAAGGTTTTTGAATTTGAT : TGGAAAAAA : AGAGGGAGAAAAAGCAAAAAAAAAAAAAAGGAGA</gDNA_template>
            <first_frame> E  L  K  Q  L  S  D  D  T  N  T  Y  K  A  I   : G  R  T  *  V  L  N  *  S  L  S  C  C  C  Y  L  K  K  G  K  G  Y  V  H  H  I  H  Y  *  P  G  I  F  K  F  F  Y  F  C  T  Y  L  T  Q  N  N  L  L  C  A  D  L  S  *  S  Q  R  L  C  *  *  T  S  K  S  K  N  S  R  M  V  K  L  Q  L  P  L  C  R :   L  L  K  S  I  W  K  S  T  W  R  R  W  R  I  T  L  G  S  S  C  N  K  I  L  V  L  L  V  R  *  *  P  C  L  *  R  R  Y  L  L  L  L  K  F  L  L  S  T  L  S  L  E  E  K  K  N  D  S  F  S  K  I  F  W  N  F  K  F  *  V  K  N  T  L  C  T  G  C  M  R  N  L  S  T  *  F  L  A  R  C  C  V  G  R  K  I  V  M  L  A  S  I  G  P  G  I  G  L  E  T  T  A  S  Q  V  V  K  F  I  R  N  V  V  Y  *  L  S  L  T  L  L  R  L  E  F  P  N  S  *  Y  L  M  V  G  C  I  L  S  A  N  G  S  S  S  K  V  F  E  F  D  :  W  K  K  :  R  G  R  K  S  K  K  K  K  K  E  </first_frame>
            <second_frame>  N  *  N  S  C  L  M  T  L  I  H  T  K  P  *  :  E  E  R  K  F  *  T  E  V  Y  R  V  A  V  I  *  K  K  E  K  D  M  C  I  I  Y  I  I  D  L  E  F  S  N  F  S  T  F  V  L  I  S  L  R  T  I  F  Y  V  Q  I  C  L  R  A  K  G  C  V  N  E  R  A  R  A  K  T  Q  G  W  *  N  C  N  C  L  F  A   : D  F  *  R  V  F  G  K  A  H  G  G  G  G  E  *  P  *  G  A  L  A  T  R  S  W  S  C  S  S  D  N  D  H  V  C  S  V  D  I  F  C  F  *  S  S  F  C  Q  L  F  P  W  K  K  K  K  T  I  A  S  Q  R  F  F  G  T  S  N  S  R  *  R  I  H  S  V  L  A  V  *  G  T  Y  P  P  D  F  W  H  A  A  V  L  V  V  K  S  *  C  L  L  L  L  D  L  E  L  V  *  R  L  L  R  V  K  S  *  N  S  L  E  M  L  C  I  S  F  P  *  H  F  C  G  L  S  F  Q  I  V  N  T  *  W  L  D  V  F  F  L  Q  M  V  R  Q  V  R  F  L  N  L  I :   G  K  K :   E  G  E  K  A  K  K  K  K  R  R </second_frame>
            <third_frame>   T  E  T  A  V  *  *  H  *  Y  I  Q  S  H  R :   K  N  V  S  F  E  L  K  S  I  V  L  L  L  S  E  K  R  K  R  I  C  A  S  Y  T  L  L  T  W  N  F  Q  I  F  L  L  L  Y  L  S  H  S  E  Q  S  F  M  C  R  F  V  L  E  P  K  A  V  L  M  N  E  Q  E  Q  K  L  K  D  G  E  T  A  I  A  S  L  Q  :  T  S  K  E  Y  L  E  K  H  M  A  E  V  E  N  N  L  R  E  L  L  Q  Q  D  P  G  L  A  R  Q  I  M  T  M  S  V  A  *  I  S  S  A  S  E  V  P  F  V  N  S  F  L  G  R  K  K  K  R  *  L  L  K  D  F  L  E  L  Q  I  L  G  K  E  Y  T  L  Y  W  L  Y  E  E  L  I  H  L  I  S  G  T  L  L  C  W  S  *  N  R  N  A  C  F  Y  W  T  W  N  W  S  R  D  Y  C  E  S  S  R  K  I  H  *  K  C  C  V  L  A  F  L  N  T  F  A  A  *  V  S  K  *  L  I  L  N  G  W  M  Y  S  F  C  K  W  F  V  K  *  G  F  *  I  *   : L  E  K   : K  R  E  K  K  Q  K  K  K  K  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87307" stop="87291"/>
                    <exon start="84891" stop="84657"/>
                    <exon start="79851" stop="79738"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIQSHRKNVSFELKSIVLLLSEKRKRICASYTLLTWNFQIFLLLYLSHSEQSFMCRFVLEPKAVLMNEQEQKLKDGETAIASLQTSKEYLEKHMAEVENNLRELLQQDPGLARQIMTMSVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="108021" PGL_stop="108815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108021" e_stop="108815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="108021" e_stop="108815" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108021" stop="108761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108080" stop="108815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108080" stop="108775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108080" stop="108774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCTGATACGGGTGCCACCTCATGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAGCCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGATGGAAGCAACCTCTTACAAATCGGTAACCAAGAAGGTGGTGGCTGATTTTGTCCGCAACAATTTGATATGCAGATTTGGAGTTCCAGAATCCATCATCACTGATAACGGTGCGAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTCAAGATTACTCATCGAAGGTCAATTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTCTGAGGAAAATGATCAACAAGCAGCGAGGTTGGCATGAAATGTTGCCATATGCTCTACTAGGTTATCGAACAATGGTCAGAACATCGACTGGGGCTACTCCATACCTGCTAGTATATGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCATTGAGGATCATCCAAGAAGCTGAGTTAAGCAACGCGGATTGGGTTAGCAAACGAATTGATCAACTATCTTTGATTGATGAGAAGAGAATGGTCGCCGTCTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTCGAAGTTGGTCAGTTGGTCCTTAAGCGTATTTTTCCTCATCAAGACGAATACAAAGGAAAGTTCGCACCAAACTG</gDNA_template>
            <first_frame> *  S  D  T  G  A  T  S  *  T  *  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  A  S  R  F  *  W  T  Q  I  H  F  G  C  H  *  L  F  H  Q  V  D  G  S  N  L  L  Q  I  G  N  Q  E  G  G  G  *  F  C  P  Q  Q  F  D  M  Q  I  W  S  S  R  I  H  H  H  *  *  R  C  E  S  Q  Q  S  S  D  E  R  D  M  *  T  I  Q  D  Y  S  S  K  V  N  C  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  Y  Q  K  D  S  E  E  N  D  Q  Q  A  A  R  L  A  *  N  V  A  I  C  S  T  R  L  S  N  N  G  Q  N  I  D  W  G  Y  S  I  P  A  S  I  W  N  R  S  S  R  T  C  R  S  R  D  T  V  I  E  D  H  P  R  S  *  V  K  Q  R  G  L  G  *  Q  T  N  *  S  T  I  F  D  *  *  E  E  N  G  R  R  L  S  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  R  S  W  S  V  G  P  *  A  Y  F  S  S  S  R  R  I  Q  R  K  V  R  T  K  L </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  A  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  M  E  A  T  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  T  H  R  R  S  I  A  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  N  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  M  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  D  W  V  S  K  R  I  D  Q  L  S  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  Q  D  E  Y  K  G  K  F  A  P  N   </second_frame>
            <third_frame>   I  *  Y  G  C  H  L  M  N  L  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  V  L  *  S  Q  P  L  L  M  D  T  D  S  F  W  L  P  L  I  I  S  P  S  G  W  K  Q  P  L  T  N  R  *  P  R  R  W  W  L  I  L  S  A  T  I  *  Y  A  D  L  E  F  Q  N  P  S  S  L  I  T  V  R  I  S  T  V  I  *  *  K  R  Y  V  N  N  S  R  L  L  I  E  G  Q  L  L  I  A  L  K  *  T  E  L  *  R  P  P  T  R  I  S  K  R  F  *  G  K  *  S  T  S  S  E  V  G  M  K  C  C  H  M  L  Y  *  V  I  E  Q  W  S  E  H  R  L  G  L  L  H  T  C  *  Y  M  E  Q  K  Q  S  Y  L  S  K  S  R  Y  R  H  *  G  S  S  K  K  L  S  *  A  T  R  I  G  L  A  N  E  L  I  N  Y  L  *  L  M  R  R  E  W  S  P  S  V  M  A  S  C  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  S  K  L  V  S  W  S  L  S  V  F  F  L  I  K  T  N  T  K  E  S  S  H  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033D17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108022" stop="108813"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIGPIEPAASNGHRFILVAIDYFTKWMEATSYKSVTKKVVADFVRNNLICRFGVPESIITDNGANLNSHLMKEICEQFKITHRRSIAYRPQMNGAVEAANKNIKKILRKMINKQRGWHEMLPYALLGYRTMVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNADWVSKRIDQLSLIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHQDEYKGKFAPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 332 chains have been computed
$ 
$ memory statistics:
$ 557680 bytes spliced alignments in total
$ 62 spliced alignments have been stored
$ 8994 bytes was the average size of a spliced alignment
$ 18776 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1877 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 389 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:05:01
-->
