<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 15:24:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734007" ref_strand="+" ref_description="SGN-E734007 [LB11CB07]">
      <seq>cggtttgtgaactttcccgtctcttcaatccctccggcgaactcatcggcgatctctgtctttatccggcgaagtcagtcatgaaggttagggcatcagtgaagaagatgtgcgagttctgtcgcacaatcaagcggcgcgggcgggtatatgtgctatgtacatctaatcccaagcacaaacaaagacaaggctattcaacctttgcctctgaaggcctcatatcaactacgcctgtgatgacgagggttaagcaggatacttcagttaccgaaggtattcactctctcgttcctggtaagatcgaggcaactgtgacaccttggtggaaaagggggatagcttccattctcttcaaggacggacagtaagcaagtagaagttttgttgcaaagagtgttacactgtaggcacgcactccgaaacattattgctttcttgaactttggtcagctttcttgctgctgttatttctcttgccccttcatacccttgaacacattgtcatgtgtgctatggttacaattgcaatgagctataagtatgttagtaccttcttctctttgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9314" stop="13602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9614" g_stop="9691" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9692" i_stop="11702" i_length="2011">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11703" g_stop="11856" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="232" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11857" i_stop="12967" i_length="1111">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12968" g_stop="13302" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="567" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="588"/>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E734007" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9614" e_stop="9691"/>
          <exon e_start="11703" e_stop="11856"/>
          <exon e_start="12968" e_stop="13302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTTGTGAACTTTCCCGTCTCTTCAATCCCTCCGGCGAACTCATCGGCGATCTCTGTCTTTATCCGGCGAAGTCAGGTAGTTAAGCTAATGTATTTCTCTCGATTATCCGTATTTTCTCATTTTAGTCTCGTAGATGCTTAAACCCTAAACCCCTCTTCTTACACTTTTTGATAATGGCTTGAATGTTTTGATTATGTGCTAATTGATTCCATTAAGTTATTAGGAAATGATGACGGAATAGTGATATGATTATAATATATGAATATTGTTTATGTTAATGTGAATAAAATGGAAATTGGAATAATCGATAGTAGAACTTTTACGGCTTGCATTTTGTGGAGGTTGTGGAGTATGTACGCCTGTCATTCAGAAACTTGATGTGCTTTACATATGATAAATCTGGAAGTGGATTGAAAAATTGGAAGGGATGAAAACAACTTGAAGATAATGTTTTTAAAGGCTCTTAATCGCGCTTAACGTCCTGATGCTCAGTTAAAGCTAGGTTGTGCACTTGGACTTTATGAGCTATCACTTTACAAGGTGAATCCTGCATGACTTGTACAATCTTTGGTAGCATTGTTTTGCTATGAATAAAATTCAGCGTATCAAATACGATGTTTGGTTAGCAATTTAGAATCACGCATAACTAATGTATGTGTAATGAGGGAATATTAGTGTTATTTATAGAAGATGGAATAAGTAATAGATGAATAACTAAACCTAACCAACAATCAAGTGACCCCTAAGGTGCTAAGGCATGCGGCATGTCACCCATTGGATCTGTCCTTAAGAGGGCAGTAGTATAGTAAATATTAAAATAGTTGGTAAGCTGATAGAAAAAAAGGTTAAAATGAAATTTCTTGTGATTAGGAATAAGAAATAAAGTAGCTTGGGAAACCGAAAACTATATTTTTTCCTCTAAATCAGAAATTTCAAATGCTTTTAGATTTGATTGATATGATTTGACTTCATACATTTAGCACAATTCATATGTCCTTCCAGTTGATTTTTCTTGCATTACATTTTTGTGTGTATATGCATGATAAGTAGTTAGATATTTCTTCATTAGTGTCTGTCTTCGTTTATGTCTACGCTTTAATTCAGCTTTGTGCTTAAATCCAACAACTTTGACGTTTTCCTGTGATATTCAGTCTTCATTTTTTACTATTCTTCTTGAAATTTTGGTAAAAATTATATGCTTTACCTTGTAGGCTTGTACCCCAATTCTACTTTTCATTCCTTGTTTAAGCGATAATTATTCATTTGAGAACTGATATATGAAGAATTCCCGAGGATTTCAGTTTTAGTACTTATAAAGCCACTAACTTTCTATGGCCTTCCAAAAGTAATCAAACTTTACTAAAGGAGGCCATGGTTCCGGAGCTTCACATGTTATAAAATTGGTCTCAAGTAAATCTGATGCAGATTTGGACATTGTAAGTTAGGCCAAAAGCAAGCTAAACTTTGCTCTAAAGTGAGCTATACGTCTTATCAATTTGGTACTCAACTGGATACCTATCAAATAGAGTTGTTGTTATTCAACTAATAAATAATGTTGCTGAGGAATCATTATATGTTGAATTAGTATGCTTGCATAGCTGGAAAATCGTTGTACAACTTTTTTCTCCCCCTCTCTCACCTTCTCTTTCTCTCAATCCTCACCCCACCCTCAACCCTAGATCTCTCTCTCACACAGACATGTATTCATTTAGGCACAAATACGTGTCCCGTCTTTATGCATAGTCGTGTTCCTTTTTTTTCTTTCATCGCTTTGCAAACTCTGATATATAGAAAAGCTAAAGAATTGCTTTGGTGAATGCTTGTACTAGTTCCTGATCTTTTTAAAAAAAAAAAACTGGTAACTTTAGTCTATACACCCGCAGGTATACTGCAACAGAAGTGTAGTTCCCTTTCAAAAGTATTACAACTTACAGAGTAAAACAGTTTTAATCTAAACTGCTGCCTATAAACAATCGAACAAATTGAAGTGTCTTCTGTCCTAGTTAATATATCTTGTTTACACCAAAAATAGTTCCTAGTCTCATTGATAAATTTCTCATTGTTTCCTTGTTTGCATCATTAACAGTCATGAAGGTTAGGGCATCAGTGAAGAAGATGTGCGAGTTCTGTCGCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTACGTATGCATTCTTGGGCTTCTTTATCTCTTTTAATATAAAAATAATACAGTTGTGTAAAAATGTACAAATTCTATTACTTGAATCTCTTTTTCTCTAAATGAACTAAAATAGAGATATGCCTATAGGGACACGAGCTTTGGTGGGCATAGTTATCCGGTACTTATGGAGGTAAAGGTACCGGTAGAATTAGTCAAGGCATGCTCAAGCTGAACAAAATGCCACCATCATTTTAAAAAGAAGATAGGGATGGGAGATGGAGTTTTCTCGTCCATCTTAAGTAGGGATGTCAAAGCTGTAGCTGAGGGGGGATTGGATGGGGTGGTATTTCATTTTTCTTTTAAAAATAGAGTTAGTCAGTTAGATAGCATTTCATATTGTTAATTTGAAACGCAGCAAGGCAGGCTTCTGGTAGAAAGGTTCACGGAAGGTAGCTGCACAAAATAGCTCACCTTTTAACCATATCCCTGAATAAAACATAATTATCAGACCGATTGATGTGAATTTGAAATATGAAGTCCGCGCTCCTGAATAGTCTCCTGTACACTATTTATCATCTCTGTACCTTGTGTGTTGATTTGTCAAATGTATTATGTTTACTTCCTAAAGTGGAGGCACTGCCACCTGCTTTGAAGAAAATAAGTCATAATTTTGGGATGGACTTAACAGAACCAGGCCAAGTAATAAAGTCGAGATGAGAGAGTTGCTGTTAAAAAATTGGACATGCCAATGGTGTACACCATATTTATAAACCAAAAGCTGTAAATGACTGCCATTAGTTGTTCGGAGAATAAGAGCACTTCTGAAAAGCCGTAATGTTGCTGCCATTAGTTATTTCTTCCACTGCAAGATTTGAACTTTTAAATTTTTGTTGCTGGCTTGCTTTGATGTGTGCCGAGGCTTTATTGGAAACAACTTCTCTACCTTCCAAAGTAGGGTCTGCCGAGGCACCACCCTCTCCAGACCCCACTTGTGGGGTTTACATTGGACATGTTGTCTTTATTTGATGTGTAATTTTTGGATGTGAATGATGGTATATGCAATCCATGTTAAAAGATTGTTATAAGTAGACTTATACCAGACTATTAAGACTTTTTGCTGGTAACCTCTTCAGGCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTACCTTCTTCTCTTTGA</genome_strand>
        <mrna_strand>CGGTTTGTGAACTTTCCCGTCTCTTCAATCCCTCCGGCGAACTCATCGGCGATCTCTGTCTTTATCCGGCGAAGTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGAAGGTTAGGGCATCAGTGAAGAAGATGTGCGAGTTCTGTCGCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTACCTTCTTCTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350666" ref_strand="+" ref_description="SGN-E350666 [cTOS-7-O11]">
      <seq>agtcatgaaggttagggcatcagtgaagaagatgtgcgagttctgtcgcacaatcaagcggcgcgggcgggtatatgtgctatgtacatctaatcccaagcacaaacaaagacaaggctattcaacctttgcctctgaaggcctcatatcaactacgcctgtgatgacgagggttaagcaggatacttcagttaccgaaggtattcactctctcgttcctggtaagatcgaggcaactgtgacaccttggtggaaaagggggatagcttccattctcttcaaggacggacagtaagcaagtagaagttttgttgcaaagagtgttacactgtaggcacgcactccgaaacattattgctttcttgaactttggtcagctttcttgctgctgttatttctcttgccccttcatacccttgaacacattgtcatgtgtgctatggttacaattgcaatgagctataagtatgttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11401" stop="13587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11701" g_stop="11856" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11857" i_stop="12967" i_length="1111">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12968" g_stop="13287" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="476" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E350666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11701" e_stop="11856"/>
          <exon e_start="12968" e_stop="13287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATGAAGGTTAGGGCATCAGTGAAGAAGATGTGCGAGTTCTGTCGCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTACGTATGCATTCTTGGGCTTCTTTATCTCTTTTAATATAAAAATAATACAGTTGTGTAAAAATGTACAAATTCTATTACTTGAATCTCTTTTTCTCTAAATGAACTAAAATAGAGATATGCCTATAGGGACACGAGCTTTGGTGGGCATAGTTATCCGGTACTTATGGAGGTAAAGGTACCGGTAGAATTAGTCAAGGCATGCTCAAGCTGAACAAAATGCCACCATCATTTTAAAAAGAAGATAGGGATGGGAGATGGAGTTTTCTCGTCCATCTTAAGTAGGGATGTCAAAGCTGTAGCTGAGGGGGGATTGGATGGGGTGGTATTTCATTTTTCTTTTAAAAATAGAGTTAGTCAGTTAGATAGCATTTCATATTGTTAATTTGAAACGCAGCAAGGCAGGCTTCTGGTAGAAAGGTTCACGGAAGGTAGCTGCACAAAATAGCTCACCTTTTAACCATATCCCTGAATAAAACATAATTATCAGACCGATTGATGTGAATTTGAAATATGAAGTCCGCGCTCCTGAATAGTCTCCTGTACACTATTTATCATCTCTGTACCTTGTGTGTTGATTTGTCAAATGTATTATGTTTACTTCCTAAAGTGGAGGCACTGCCACCTGCTTTGAAGAAAATAAGTCATAATTTTGGGATGGACTTAACAGAACCAGGCCAAGTAATAAAGTCGAGATGAGAGAGTTGCTGTTAAAAAATTGGACATGCCAATGGTGTACACCATATTTATAAACCAAAAGCTGTAAATGACTGCCATTAGTTGTTCGGAGAATAAGAGCACTTCTGAAAAGCCGTAATGTTGCTGCCATTAGTTATTTCTTCCACTGCAAGATTTGAACTTTTAAATTTTTGTTGCTGGCTTGCTTTGATGTGTGCCGAGGCTTTATTGGAAACAACTTCTCTACCTTCCAAAGTAGGGTCTGCCGAGGCACCACCCTCTCCAGACCCCACTTGTGGGGTTTACATTGGACATGTTGTCTTTATTTGATGTGTAATTTTTGGATGTGAATGATGGTATATGCAATCCATGTTAAAAGATTGTTATAAGTAGACTTATACCAGACTATTAAGACTTTTTGCTGGTAACCTCTTCAGGCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTA</genome_strand>
        <mrna_strand>AGTCATGAAGGTTAGGGCATCAGTGAAGAAGATGTGCGAGTTCTGTCGCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356131" ref_strand="+" ref_description="SGN-E356131 [cTOS-20-E21]">
      <seq>agtcatgaaggttagggcatcagtgaagaagatgtgcgagttctgtcgcacaatcaagcggcgcgggcgggtatatgtgctatgtacatctaatcccaagcacaaacaaagacaaggctattcaacctttgcctctgaaggcctcatatcaactacgcctgtgatgacgagggttaagcaggatacttcagttaccgaaggtattcactctctcgttcctggtaagatcgaggcaactgtgacaccttggtggaaaagggggatagcttccattctcttcaaggacggacagtaagcaagtagaagttttgttgcaaagagtgttacactgtaggcacgcactccgaaacattattgctttcttgaactttggtcagctttcttgctgctgttatttctcttgccccttcatacccttgaacacattgtcatgtgtgctatggttacaattgcaatgagctataagtatgttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11401" stop="13587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11701" g_stop="11856" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11857" i_stop="12967" i_length="1111">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12968" g_stop="13287" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="476" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E356131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11701" e_stop="11856"/>
          <exon e_start="12968" e_stop="13287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATGAAGGTTAGGGCATCAGTGAAGAAGATGTGCGAGTTCTGTCGCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTACGTATGCATTCTTGGGCTTCTTTATCTCTTTTAATATAAAAATAATACAGTTGTGTAAAAATGTACAAATTCTATTACTTGAATCTCTTTTTCTCTAAATGAACTAAAATAGAGATATGCCTATAGGGACACGAGCTTTGGTGGGCATAGTTATCCGGTACTTATGGAGGTAAAGGTACCGGTAGAATTAGTCAAGGCATGCTCAAGCTGAACAAAATGCCACCATCATTTTAAAAAGAAGATAGGGATGGGAGATGGAGTTTTCTCGTCCATCTTAAGTAGGGATGTCAAAGCTGTAGCTGAGGGGGGATTGGATGGGGTGGTATTTCATTTTTCTTTTAAAAATAGAGTTAGTCAGTTAGATAGCATTTCATATTGTTAATTTGAAACGCAGCAAGGCAGGCTTCTGGTAGAAAGGTTCACGGAAGGTAGCTGCACAAAATAGCTCACCTTTTAACCATATCCCTGAATAAAACATAATTATCAGACCGATTGATGTGAATTTGAAATATGAAGTCCGCGCTCCTGAATAGTCTCCTGTACACTATTTATCATCTCTGTACCTTGTGTGTTGATTTGTCAAATGTATTATGTTTACTTCCTAAAGTGGAGGCACTGCCACCTGCTTTGAAGAAAATAAGTCATAATTTTGGGATGGACTTAACAGAACCAGGCCAAGTAATAAAGTCGAGATGAGAGAGTTGCTGTTAAAAAATTGGACATGCCAATGGTGTACACCATATTTATAAACCAAAAGCTGTAAATGACTGCCATTAGTTGTTCGGAGAATAAGAGCACTTCTGAAAAGCCGTAATGTTGCTGCCATTAGTTATTTCTTCCACTGCAAGATTTGAACTTTTAAATTTTTGTTGCTGGCTTGCTTTGATGTGTGCCGAGGCTTTATTGGAAACAACTTCTCTACCTTCCAAAGTAGGGTCTGCCGAGGCACCACCCTCTCCAGACCCCACTTGTGGGGTTTACATTGGACATGTTGTCTTTATTTGATGTGTAATTTTTGGATGTGAATGATGGTATATGCAATCCATGTTAAAAGATTGTTATAAGTAGACTTATACCAGACTATTAAGACTTTTTGCTGGTAACCTCTTCAGGCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTA</genome_strand>
        <mrna_strand>AGTCATGAAGGTTAGGGCATCAGTGAAGAAGATGTGCGAGTTCTGTCGCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541972" ref_strand="+" ref_description="SGN-E541972 [TUS-63-A15]">
      <seq>gtcatgaaggttagggcatcagtgaagaagatgtgcgagttctgtcgcacaatcaagcggcgcgggcgggtatatgtgctatgtacatctaatcccaagcacaaacaaagacaaggctattcaacctttgcctctgaaggcctcatatcaactacgcctgtgatgacgagggttaagcaggatacttcagttaccgaaggtattcactctctcgttcctggtaagatcgaggcaactgtgacaccttggtggaaaagggggatagcttccattctcttcaaggacggacagtaagcaagtagaagttttgttgcaaagagtgttacactgtaggcacgcactccgaaacattattgctttcttgaactttggtcagctttcttgctgctgttatttctcttgccccttcatacccttgaacacattgtcatgtgtgctatggttacaattgcaatgagctataagtatgttagtaccttcttctctttgagttaattaccgaggcaaatgtccccgttccttgctttctaatattgaccatggagttgctgattcatccattggagaagagaaaaacaggatgattcaaatttctttactttttctatggaatactatgttttccttgatccgagggtctatcgaaacaactctctgcctctgagaaggtacaggtaaggtctgcatatactccacctccctagatcccattgtgtagcagtacacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11402" stop="13841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11702" g_stop="11856" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11857" i_stop="12967" i_length="1111">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12968" g_stop="13541" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="729" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E541972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11702" e_stop="11856"/>
          <exon e_start="12968" e_stop="13541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGAAGGTTAGGGCATCAGTGAAGAAGATGTGCGAGTTCTGTCGCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTACGTATGCATTCTTGGGCTTCTTTATCTCTTTTAATATAAAAATAATACAGTTGTGTAAAAATGTACAAATTCTATTACTTGAATCTCTTTTTCTCTAAATGAACTAAAATAGAGATATGCCTATAGGGACACGAGCTTTGGTGGGCATAGTTATCCGGTACTTATGGAGGTAAAGGTACCGGTAGAATTAGTCAAGGCATGCTCAAGCTGAACAAAATGCCACCATCATTTTAAAAAGAAGATAGGGATGGGAGATGGAGTTTTCTCGTCCATCTTAAGTAGGGATGTCAAAGCTGTAGCTGAGGGGGGATTGGATGGGGTGGTATTTCATTTTTCTTTTAAAAATAGAGTTAGTCAGTTAGATAGCATTTCATATTGTTAATTTGAAACGCAGCAAGGCAGGCTTCTGGTAGAAAGGTTCACGGAAGGTAGCTGCACAAAATAGCTCACCTTTTAACCATATCCCTGAATAAAACATAATTATCAGACCGATTGATGTGAATTTGAAATATGAAGTCCGCGCTCCTGAATAGTCTCCTGTACACTATTTATCATCTCTGTACCTTGTGTGTTGATTTGTCAAATGTATTATGTTTACTTCCTAAAGTGGAGGCACTGCCACCTGCTTTGAAGAAAATAAGTCATAATTTTGGGATGGACTTAACAGAACCAGGCCAAGTAATAAAGTCGAGATGAGAGAGTTGCTGTTAAAAAATTGGACATGCCAATGGTGTACACCATATTTATAAACCAAAAGCTGTAAATGACTGCCATTAGTTGTTCGGAGAATAAGAGCACTTCTGAAAAGCCGTAATGTTGCTGCCATTAGTTATTTCTTCCACTGCAAGATTTGAACTTTTAAATTTTTGTTGCTGGCTTGCTTTGATGTGTGCCGAGGCTTTATTGGAAACAACTTCTCTACCTTCCAAAGTAGGGTCTGCCGAGGCACCACCCTCTCCAGACCCCACTTGTGGGGTTTACATTGGACATGTTGTCTTTATTTGATGTGTAATTTTTGGATGTGAATGATGGTATATGCAATCCATGTTAAAAGATTGTTATAAGTAGACTTATACCAGACTATTAAGACTTTTTGCTGGTAACCTCTTCAGGCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTACCTTCTTCTCTTTGAGTTAATTACCGAGGCAAATGTCCCCGTTCCTTGCTTTCTAATATTGACCATGGAGTTGCTGATTCATCCATTGGAGAAGAGAAAAACAGGATGATTCAAATTTCTTTACTTTTTCTATGGAATACTATGTTTTCCTTGATCCGAGGGTCTATCGAAACAACTCTCTGCCTCTGAGAAGGTACAGGTAAGGTCTGCATATACTCCACCTCCCTAGATCCCATTGTGTAGCAGTACACTTG</genome_strand>
        <mrna_strand>GTCATGAAGGTTAGGGCATCAGTGAAGAAGATGTGCGAGTTCTGTCGCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTACCTTCTTCTCTTTGAGTTAATTACCGAGGCAAATGTCCCCGTTCCTTGCTTTCTAATATTGACCATGGAGTTGCTGATTCATCCATTGGAGAAGAGAAAAACAGGATGATTCAAATTTCTTTACTTTTTCTATGGAATACTATGTTTTCCTTGATCCGAGGGTCTATCGAAACAACTCTCTGCCTCTGAGAAGGTACAGGTAAGGTCTGCATATACTCCACCTCCCTAGATCCCATTGTGTAGCAGTACACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300933" ref_strand="+" ref_description="SGN-E300933 [cLEW-8-K21]">
      <seq>gaagaagatgtgcgagttctgtctcacaatcaagcggcgcgggcgggtatatgtgctatgtacatctaatcccaagcacaaacaaagacaaggctattcaacctttgcctctgaaggcctcatatcaactacgcctgtgatgacgagggttaagcaggatacttcagttaccgaaggtattcactctctcgttcctggtaagatcgaggcaactgtgacaccttggtggaaaagggggatagcttccattctcttcaaagacggacagtaagcaagtagaagttttgttgcaaagagtgttacactgtatgcacgcactccgaaacattattgctttcttgaactttggtcagctttcttgctgctgttatttctcttgccccttcatacccttgaacacattgtcatgtgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11425" stop="13550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11725" g_stop="11856" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11857" i_stop="12967" i_length="1111">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12968" g_stop="13250" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="415" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E300933" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11725" e_stop="11856"/>
          <exon e_start="12968" e_stop="13250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGATGTGCGAGTTCTGTCGCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTACGTATGCATTCTTGGGCTTCTTTATCTCTTTTAATATAAAAATAATACAGTTGTGTAAAAATGTACAAATTCTATTACTTGAATCTCTTTTTCTCTAAATGAACTAAAATAGAGATATGCCTATAGGGACACGAGCTTTGGTGGGCATAGTTATCCGGTACTTATGGAGGTAAAGGTACCGGTAGAATTAGTCAAGGCATGCTCAAGCTGAACAAAATGCCACCATCATTTTAAAAAGAAGATAGGGATGGGAGATGGAGTTTTCTCGTCCATCTTAAGTAGGGATGTCAAAGCTGTAGCTGAGGGGGGATTGGATGGGGTGGTATTTCATTTTTCTTTTAAAAATAGAGTTAGTCAGTTAGATAGCATTTCATATTGTTAATTTGAAACGCAGCAAGGCAGGCTTCTGGTAGAAAGGTTCACGGAAGGTAGCTGCACAAAATAGCTCACCTTTTAACCATATCCCTGAATAAAACATAATTATCAGACCGATTGATGTGAATTTGAAATATGAAGTCCGCGCTCCTGAATAGTCTCCTGTACACTATTTATCATCTCTGTACCTTGTGTGTTGATTTGTCAAATGTATTATGTTTACTTCCTAAAGTGGAGGCACTGCCACCTGCTTTGAAGAAAATAAGTCATAATTTTGGGATGGACTTAACAGAACCAGGCCAAGTAATAAAGTCGAGATGAGAGAGTTGCTGTTAAAAAATTGGACATGCCAATGGTGTACACCATATTTATAAACCAAAAGCTGTAAATGACTGCCATTAGTTGTTCGGAGAATAAGAGCACTTCTGAAAAGCCGTAATGTTGCTGCCATTAGTTATTTCTTCCACTGCAAGATTTGAACTTTTAAATTTTTGTTGCTGGCTTGCTTTGATGTGTGCCGAGGCTTTATTGGAAACAACTTCTCTACCTTCCAAAGTAGGGTCTGCCGAGGCACCACCCTCTCCAGACCCCACTTGTGGGGTTTACATTGGACATGTTGTCTTTATTTGATGTGTAATTTTTGGATGTGAATGATGGTATATGCAATCCATGTTAAAAGATTGTTATAAGTAGACTTATACCAGACTATTAAGACTTTTTGCTGGTAACCTCTTCAGGCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCT</genome_strand>
        <mrna_strand>GAAGAAGATGTGCGAGTTCTGTCTCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAAGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTATGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218427" ref_strand="+" ref_description="SGN-E218427 [cLEL-18-A4](-)">
      <seq>ttctgtcgcacaatcaaccggcgcgggcgggtatatgtgctatgtacatctaatcccaagcacaaacaaagacaaggctattcaacctttgcctctgaaggcctcatatcaactacgcctgtgatgacgagggttaagcaggatacttcagttaccgaaggtattcactctctcgttcctggtaagatcgaggcaactgtgacaccttggtggaaaagggggatagcttccattctcttcaaggacggacagtaagcaagtagaagttttgttgcaaagagtgttacactgtaggcacgcactccgaaacattattgctttcttgaactttggtcagctttcttgctgctgttatttctcttgccccttcatacccttgaacacattgtcatgtgtgctatggttacaattgcaatgagctataagtatgttagtaccttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11441" stop="13591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11741" g_stop="11856" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11857" i_stop="12967" i_length="1111">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12968" g_stop="13291" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="440" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="457"/>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E218427" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11741" e_stop="11856"/>
          <exon e_start="12968" e_stop="13291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTCGCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTACGTATGCATTCTTGGGCTTCTTTATCTCTTTTAATATAAAAATAATACAGTTGTGTAAAAATGTACAAATTCTATTACTTGAATCTCTTTTTCTCTAAATGAACTAAAATAGAGATATGCCTATAGGGACACGAGCTTTGGTGGGCATAGTTATCCGGTACTTATGGAGGTAAAGGTACCGGTAGAATTAGTCAAGGCATGCTCAAGCTGAACAAAATGCCACCATCATTTTAAAAAGAAGATAGGGATGGGAGATGGAGTTTTCTCGTCCATCTTAAGTAGGGATGTCAAAGCTGTAGCTGAGGGGGGATTGGATGGGGTGGTATTTCATTTTTCTTTTAAAAATAGAGTTAGTCAGTTAGATAGCATTTCATATTGTTAATTTGAAACGCAGCAAGGCAGGCTTCTGGTAGAAAGGTTCACGGAAGGTAGCTGCACAAAATAGCTCACCTTTTAACCATATCCCTGAATAAAACATAATTATCAGACCGATTGATGTGAATTTGAAATATGAAGTCCGCGCTCCTGAATAGTCTCCTGTACACTATTTATCATCTCTGTACCTTGTGTGTTGATTTGTCAAATGTATTATGTTTACTTCCTAAAGTGGAGGCACTGCCACCTGCTTTGAAGAAAATAAGTCATAATTTTGGGATGGACTTAACAGAACCAGGCCAAGTAATAAAGTCGAGATGAGAGAGTTGCTGTTAAAAAATTGGACATGCCAATGGTGTACACCATATTTATAAACCAAAAGCTGTAAATGACTGCCATTAGTTGTTCGGAGAATAAGAGCACTTCTGAAAAGCCGTAATGTTGCTGCCATTAGTTATTTCTTCCACTGCAAGATTTGAACTTTTAAATTTTTGTTGCTGGCTTGCTTTGATGTGTGCCGAGGCTTTATTGGAAACAACTTCTCTACCTTCCAAAGTAGGGTCTGCCGAGGCACCACCCTCTCCAGACCCCACTTGTGGGGTTTACATTGGACATGTTGTCTTTATTTGATGTGTAATTTTTGGATGTGAATGATGGTATATGCAATCCATGTTAAAAGATTGTTATAAGTAGACTTATACCAGACTATTAAGACTTTTTGCTGGTAACCTCTTCAGGCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTACCTT</genome_strand>
        <mrna_strand>TTCTGTCGCACAATCAACCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218496" ref_strand="+" ref_description="SGN-E218496 [cLEL-18-A4](-)">
      <seq>gaaggcctcatatcaactacgctgtgatgacgagggttaagcaggatacttcagttaccgaaggtattcactctctcgttcctggtaagatcgaggcaactgtgacaccttggtggaaaagggggatagcttccattctcttcaaggacggacagtaagcaagtagaagttttgttgcaaagagtgttacactgtaggcacgcactccgaaacattattgctttcttgaactttggtcagctttcttgctgctgttatttctcttgccccttcatacccttgaacacattgtcatgtgtgctatggttacaattgcaatgagctataagtatgttagtaccttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11537" stop="13591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11837" g_stop="11856" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11857" i_stop="12967" i_length="1111">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12968" g_stop="13291" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="343" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="360"/>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E218496" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11837" e_stop="11856"/>
          <exon e_start="12968" e_stop="13291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCCTCATATCAACTACGTATGCATTCTTGGGCTTCTTTATCTCTTTTAATATAAAAATAATACAGTTGTGTAAAAATGTACAAATTCTATTACTTGAATCTCTTTTTCTCTAAATGAACTAAAATAGAGATATGCCTATAGGGACACGAGCTTTGGTGGGCATAGTTATCCGGTACTTATGGAGGTAAAGGTACCGGTAGAATTAGTCAAGGCATGCTCAAGCTGAACAAAATGCCACCATCATTTTAAAAAGAAGATAGGGATGGGAGATGGAGTTTTCTCGTCCATCTTAAGTAGGGATGTCAAAGCTGTAGCTGAGGGGGGATTGGATGGGGTGGTATTTCATTTTTCTTTTAAAAATAGAGTTAGTCAGTTAGATAGCATTTCATATTGTTAATTTGAAACGCAGCAAGGCAGGCTTCTGGTAGAAAGGTTCACGGAAGGTAGCTGCACAAAATAGCTCACCTTTTAACCATATCCCTGAATAAAACATAATTATCAGACCGATTGATGTGAATTTGAAATATGAAGTCCGCGCTCCTGAATAGTCTCCTGTACACTATTTATCATCTCTGTACCTTGTGTGTTGATTTGTCAAATGTATTATGTTTACTTCCTAAAGTGGAGGCACTGCCACCTGCTTTGAAGAAAATAAGTCATAATTTTGGGATGGACTTAACAGAACCAGGCCAAGTAATAAAGTCGAGATGAGAGAGTTGCTGTTAAAAAATTGGACATGCCAATGGTGTACACCATATTTATAAACCAAAAGCTGTAAATGACTGCCATTAGTTGTTCGGAGAATAAGAGCACTTCTGAAAAGCCGTAATGTTGCTGCCATTAGTTATTTCTTCCACTGCAAGATTTGAACTTTTAAATTTTTGTTGCTGGCTTGCTTTGATGTGTGCCGAGGCTTTATTGGAAACAACTTCTCTACCTTCCAAAGTAGGGTCTGCCGAGGCACCACCCTCTCCAGACCCCACTTGTGGGGTTTACATTGGACATGTTGTCTTTATTTGATGTGTAATTTTTGGATGTGAATGATGGTATATGCAATCCATGTTAAAAGATTGTTATAAGTAGACTTATACCAGACTATTAAGACTTTTTGCTGGTAACCTCTTCAGGCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTACCTT</genome_strand>
        <mrna_strand>GAAGGCCTCATATCAACTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541969" ref_strand="+" ref_description="SGN-E541969 [TUS-63-A15](-)">
      <seq>gaactttggtcagctttcttgctgctgtatttctcttgccccttcatacccttgaacacattgtcatgtgtgctatggttacaattgcaatgagctataagtatgttagtaccttcttctctttgagttaattaccgaggcaaatgtccccgttccttgctttctaatattgaccatggagttgctgattcatccattggagaagagaaaaacaggatgattcaaatttctttactttttctatggaatactatgttttccttgatccgagggtctatcgaaacaactctctgcctctgagaaggtacaggtaaggtctgcatatactccacctccctagatcccattgtgtagcagtacacttggtacaccgttgtttcgtttatagaatagtaaaggtttctttcaggattggccctagttgcatgaagaatgaaagtggacttgctttaaaatgggatattaagcgaacttttaataattatgtcaaacattattggagtgtttgttaggtgtattattggatatcaattattttgatgactccattgttttgtgtcaaactcaacccacattttgtcactttcatttaaaagtagatggtggaagtatcattatatcatcttcaattagtttttcatattttccatggtggatatcatcagtagttaaaaggtgtaaaaaatatattagttcaatgttggttaaatgaattgaatatgtaaatgatacatgacttgcgtttttcgatttagtataaatagttagtactcgcatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="12876" stop="14255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13176" g_stop="13955" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="780" polyA_stop="790"/>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E541969" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13176" e_stop="13955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTACCTTCTTCTCTTTGAGTTAATTACCGAGGCAAATGTCCCCGTTCCTTGCTTTCTAATATTGACCATGGAGTTGCTGATTCATCCATTGGAGAAGAGAAAAACAGGATGATTCAAATTTCTTTACTTTTTCTATGGAATACTATGTTTTCCTTGATCCGAGGGTCTATCGAAACAACTCTCTGCCTCTGAGAAGGTACAGGTAAGGTCTGCATATACTCCACCTCCCTAGATCCCATTGTGTAGCAGTACACTTGGTACACCGTTGTTTCGTTTATAGAATAGTAAAGGTTTCTTTCAGGATTGGCCCTAGTTGCATGAAGAATGAAAGTGGACTTGCTTTAAAATGGGATATTAAGCGAACTTTTAATAATTATGTCAAACATTATTGGAGTGTTTGTTAGGTGTATTATTGGATATCAATTATTTTGATGACTCCATTGTTTTGTGTCAAACTCAACCCACATTTTGTCACTTTCATTTAAAAGTAGATGGTGGAAGTATCATTATATCATCTTCAATTAGTTTTTCATATTTTCCATGGTGGATATCATCAGTAGTTAAAAGGTGTAAAAAATATATTAGTTCAATGTTGGTTAAATGAATTGAATATGTAAATGATACATGACTTGCGTTTTTCGATTTAGTATAAATAGTTAGTACTCGCATCA</genome_strand>
        <mrna_strand>GAACTTTGGTCAGCTTTCTTGCTGCTG-TATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTACCTTCTTCTCTTTGAGTTAATTACCGAGGCAAATGTCCCCGTTCCTTGCTTTCTAATATTGACCATGGAGTTGCTGATTCATCCATTGGAGAAGAGAAAAACAGGATGATTCAAATTTCTTTACTTTTTCTATGGAATACTATGTTTTCCTTGATCCGAGGGTCTATCGAAACAACTCTCTGCCTCTGAGAAGGTACAGGTAAGGTCTGCATATACTCCACCTCCCTAGATCCCATTGTGTAGCAGTACACTTGGTACACCGTTGTTTCGTTTATAGAATAGTAAAGGTTTCTTTCAGGATTGGCCCTAGTTGCATGAAGAATGAAAGTGGACTTGCTTTAAAATGGGATATTAAGCGAACTTTTAATAATTATGTCAAACATTATTGGAGTGTTTGTTAGGTGTATTATTGGATATCAATTATTTTGATGACTCCATTGTTTTGTGTCAAACTCAACCCACATTTTGTCACTTTCATTTAAAAGTAGATGGTGGAAGTATCATTATATCATCTTCAATTAGTTTTTCATATTTTCCATGGTGGATATCATCAGTAGTTAAAAGGTGTAAAAAATATATTAGTTCAATGTTGGTTAAATGAATTGAATATGTAAATGATACATGACTTGCGTTTTTCGATTTAGTATAAATAGTTAGTACTCGCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248628" ref_strand="+" ref_description="SGN-E248628 [cLEF-58-G10]">
      <seq>ctatatggttttgctctgaggtcagaaaaagattggatttttatgtttggggttctgtgatctggttcattttggagctttgaagaggaattggatagtgattcttgtatgtttagatatatgatgctgtctagttctttcagtgcttggatcagtcattttctagcttgcatgggaggttgttttggttgctgtgcaaaatctcaaccagttattgctgtggatgaaccatctaaaggactacgaatacaaggaaagttggtgagaaaacagagtttgtcggatgatttttggagcaccagtacatgcgatctggagattagtactgttcaatctcatagaagtatgtcttccatcagtatctcaaatcagagcctcagtcaacagagtggcactggcaatgctagcaacaataatgaattcgtaaatcacggctatcttctttggaaccagaccaggcttcagtggctagcaagtaaaaatccagagaaccaaagagtcattgaagaaccgatgttaacgtgagaaccttgcttatgtttatgtttgtgatgaagcgtttctacactacagttgcaaatctcatggaatcaaatgttaggacttccctttaagtgttattatgccactagaagactcagaaataagctgtcactttttctttattactgtgctgtctggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="18644" stop="27908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18944" g_stop="18968" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18969" i_stop="19059" i_length="91">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.297" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19060" g_stop="19210" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="176" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19211" i_stop="26909" i_length="7699">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26910" g_stop="27166" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="433" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27167" i_stop="27358" i_length="192">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27359" g_stop="27608" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="683" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E248628" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18944" e_stop="18968"/>
          <exon e_start="19060" e_stop="19210"/>
          <exon e_start="26910" e_stop="27166"/>
          <exon e_start="27359" e_stop="27608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATATGGTTTTGCTCTGAGGTCAGGTAAAAAAAGTTGTCTTTTTTTATTTTCTTTCTATTTCTTATTCTGATTCTTGAAAAGTGAAAAGGGTTGTTTATTTTCTTGTTGGAACAGAAAAAGATTGGATTTTTATGTTTGGGGTTCTGTGATCTGGTTCATTTTGGAGCTTTGAAGAGGAATTGGATAGTGATTCTTGTATGTTTAGATATATGATGCTGTCTAGTTCTTTCAGTGCTTGGATCAGTCATTTTCTAGCTTGCATGGGGTATGTATTCAGATTCTTACAAATCAGTTTACTGTTTCTTGAATTGTTGTTGGTTTAGTGAAAGTTTTTTCTGTTTTTTTATTCAATTTGCTGAATTCTAGGCTGTTTGAAAGTGATTATATGTGTGTGATGGGGCTTTTTAGTGGTTTGTTGAACATATTATTTGATGTCATTGACTTTTTTATGAAAATTGTGATTCATTTGCCTATTTGGAAATATTTAGCTGCTATTTGTATATTTTAGCCACTGAAAAGGACACCCAAAGGGGGAAAATGGAATTGGAGGAAGGGGTTTTGCTCCTCAAGAGTGAGGGAGGAGAAAGTTTAAAACTTGTATGTTCTTTAGATGGAGGAGAAGGGGTTTGGGGGGTGGGGGGAGGGGGTGAATCAGATGTCTAGGAAAGTGAACTAAGAAATTTCTTGCCATCTGTCATAGTGGACAGAGTTACATTATCTAGTGTTTGGTGTTTGATCTTCCAAACTATGGTTTGAAGAGTAGCTGATAAAGTGAACTTCCTTTTGCAAAAGGCTAATTCTATCATATGATTATTTGTAATCTGTTAATTTAAATATTTGGGCATATGATTTGCGTTAATATTGATTCTTTCAAGACATAATTTCTGAAAATTTTGAAGAGAAACAAAATTGAAATGATTAGATAAATCAGATTAGGTTGAGGAAATAACCACATTTATCATTTTCAAGAACTAAAGGACTGTTTCAAACTTCTAATGAGCACCATCAGCTGTGGGACTTCAAATGCAATTAATAGTCGGTAGAATATTTAGGTGTGCTCTATGTACCTCACCTTGGAGTAATGGAATAATTAGCATAGAAGTAATCTATCTTGGAATATAAGATTACCAAAATGGATATTGTCATTAGCATGGGATGCTGGATACCTTTCATGTTTCATTTTTTCGGAATCATCTTTTCTTCTCCTATTGCTTTCAGTAAGCTTAGTTATTGGGAGATGCTAGAGCTGGTTTGGAAGGGTTTGTTATCTTGCAAAACAGTTTTAAGTGTATTTTTACTAGCAAATAGTCGCTACCCGAAAGATTGGTATATACATTCTGTATGCTTCCGGAAAGGGGGAGAGGAAGGGGAGAAGGGAGTTGGAGGTGAACTGGCTAATCTACTTCCACTTCATGAAGTATGTAACTATGTTAACCTTCAACTCTGGTTGTCTTGAATAGATTAAAAAGGAAATACAAGATATACTTCCTCCAGCCCTTCCAATTTTGCGAGGCTTGAAAAGACTTAAATCATTTCTACTATCTGTTGCTTCATTTTGCTTTGTATCTTGATAGTTTTCATTTTTTCTTTTAATTCCCTCTTAAGACGAAGGTCTATCAGTAACTGCCTCACTACCCCACAAAGGTAGATGTAAGGTCTGTGTGCATCTTACTCTCCCCAGATGCCATTGTGGGAGTATCTGCTATCTGGTTATGTTGTTGAAAAAAACTTAAATTGAAGGGAAGCATACTCTTCTAGTTTTACTCCATATCATTGTTCTCCTAAGAAAACATAAGGTAACAGCCCATCTTCCTTCCTCCTTTAATTCACCTTCTATAAGTCATTTTCTTAGAGTTTGTTACTTGGTGTGTCATATGGGTAATCAGTGAGGATGAGTTTGGAAATTTTTTGAGTTATCAATCCTTGAACCTCCGAAGTTAAAGAGGGCCTTTGATATATGATTTAGAAGGGGGTGGGGTGAGGGGGATGGGAAGGAGGCTTGAAAGTCTCTTTGGAGCAGCTTGTGATTGCTGAAAATCTGAGAGATATGTTTTATCTTGATATATTATGTCATATATGGTGGCTATTTGTGATATGATTTTGGATAACATCTGTCAGACTATGACTCTAAGTGGAGTTGTCATCTGGATATCTTTTATTTCATGTGTGTGTTCACTAATTGTTCCCAGTTACTTTACTGTCTTGTCTTCAGTACATCCCAATTTTTCTGATCTCTTCATTTGATTTTAGCTAATCTGTATGAAAGATCATTTGGTTGTCCTTTCCCAATTTTGTGCTAAGTGAAGGGCCTTATGGTTTATGAAAGGGAGGATAAGGAAGTCATAAAAATACGGAGATTAGGCTTGTTTTGTCCATCTCAATTTGTTGAAAAGCATGTGCCAAAAGAATGCTTGGTAGAAATTCATTCTTGGAGATCAAGAATGAAGAGTGCGGAGGAGACCTTTGGGCAATTTGTCCTTTTCTCTATTTTTATGATAGGAACCGGCAACTCATATAGTTAAAAATAGAGAGTCCATTCTCTCATCCCAACACATAAAGTAGAACATAGAAGCAAGAGCATAGAGCAATTCAGACATAAGAAATACAATCTTTAAGATAAATAGAGTACAAGCTGTATATAGTGAGCTATGTAATCAAAAGATGATTGTTTCTCTTAATTATGTAATGATACTAACCCTTCGGGGTGTCAGGTGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCTTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGGTTAGCTCGTGCACCAGGCTTGCCTAGTACGGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCCTGTGTACATCCAAAGGGTAGCGGCTACGGGTATCCCTTGTCGTCAAAAATAAAATAAAATTATGTAATAATACTATAGAGTGAAAATTCTGTTACTATAGTCATATTATTTTGCCACTCTAATAGAGCTTTCCATGTTAACATTTTGATGGTCTTGGTCTCTTTATTTTTTTAAACAGAGAGAACTTTTTCTATAGGAGATTACTCTAGGCAATACAACAAATCTGAACCCATAAAACCTGAGGATTATAAAAACAGCTAGTGCAATCAGAATTACTTTGGATATTTGTTTACACTTTTTGTGGGGAGCTATACCTTGGCACTTAAAATTACAGTAGAGTGGCATTCTCTACAATTGAATTGGATTATATTATTTTTACTAAAGCTGGCAAGGAAATGATGTGGCTCAAACTGTTTCTTCAAGAAATTTGGCTTGTGGAAGAATGAGTATGTGGTCTATTAGGACAGTCAAAGACTCAAAGTGTGACGGACATGAACAATAACTAAACATATTGATGTGAGATTTCATTGGATTCGAAAAAATGTAGAGACTAGATAACAAACTCTTACAAAACGTGAAAAAAGTAGAGACTGGAATGATTTCTTACAAATCGTGAAGATTTTCATTTGTGAGAATCCTTTAAATATGTTGACCAAGATAGTAACAAGAGACAAGTTTAAGTGTGTGAAAACCCTGTCGACTATGTTGCTCGGACAGACTTTGGTGTAGGTTTTTAATACCATGCTGATCTGGAGGTCAGACTCCTCATCACTTAAATTTGAGGATTTGGTGGTACGGATGCAAGTGCGGATACATGTGCTCGGATACGTCCATAAATGTCATATTAAAACATAAATAAGTATGCATTTTAATTAATCAAAGTTATTGAATTAAATAAATACGATTTAATTCTTTTATAAACACCTAATAGTTTGTTCTAAGATATCTCGTGTAAATCAAAATATTCTTGTTCTTTTTGGTCATACTTGTAGTCAAGGCACCCTAGGTAAGTTGACCAAATCCAGTGCGATGCCAAACCCACACCCAAACTATGTCGAATGGACATGGGTGCAACAAGGATTCGAAGGGCTTGTGTGTAGCATAGCCTCTAGGCGCATCTAGATATTCAGTGTTACCTTCATCAGGCTTAGGTGAATTGGTCTGGAGGGGTGAATTTATGGGGTCCATTCCCAATTTATTAAAAAACCATGTGCCAAAAAAACACTAGGTAAAAATTCATCTTAGAGGTCAAGAATAAAGTATGCGGGGGAGAACTTTCGAGCAATTGTTCCGACAAGTGACCTCTTGCATGAAAAGTTTTAGACAAGTGATTAGACACTTGTCATGAATAAAAGCATATTCATGTTGATCATTTGCAATCATAAACTAACAAGTCTCCCGCAACTAATCCAATTCTCTTTCGGGTAGAATCTGAATCTTAACTGCTCTTTTTCTTAATTCTTTTTTTAGTAGCCTACTTTGTTATTTGAATTTTGTGGTTCCTCCTTACTCATTGAGGAATTGTTGGCGAATATAATTGAAAAGGAAAATAAATATGTATACTGAAAGGTAAAAAAATATTTGTATAAAGTGATACGCGGCTTCTTGAACTCGTCCGCATTTTTCACTTTGACACCTTAACGAAAACTAGCACCTATTGAACATCTAAATTACCCAAAAACTGTACCTATTAAACACAAAAGGTGATATGACAATGTAAGCGTTCCTCACTTTCCTTGGGTGTGTAAATGCATCACAAATAATGATTTGTTTGTTTTTTTTGTTTGAAAAAACTGACATCTTTTGTGCATGACTATAACCAAATGATCTTACTTCACTTCTTGTTTAACAATTCGCCTCCACTCCAGCGCCACAAGTTTACCATTTTCATTCATCTGATTTGGCATTCAGGGAAATAATACTTCTGGCACTTGAATCTGAAGAAAGAAAGAAAGAAGATTCTTGGGTCATCTTGGTTAAAAATGTAGGCCAATATCCATCAATCCATTTCCGAGCAAACACCACCATTCAACAATCATTCTGTTAAACTATCTCAGAGAATTAGATAGAATCAATTTTAAATGACACAATCTGGATCCCCTCTCTATCTCTTCTTTATCGAACCGTTTATCTTCCACAAACATCTCAACCATTCTGTTAAGCTATATACTGTGTTTCATTGATTATTTTCACTTTTGTACTAAATCTGAACATATTGTTATAAGAAGGAAAGAAAACGGTGAGCTTTGTCGGAGGGGGTGGGGGTGACAACTAGAGACGAGGGTAAGAACATGAAAGTGGAAAGGGTTGGGTGAGTGGCTGTGAGGTGTAGAGAATGAGTTCCCCTTTTTCTTTTTTTCATTGATTATTTTTTTGAATTATAAGGGGTTCAGAACTATTTTCTTAATTGATTTATAATTATTTTGGGCCCATTCCCATAAGTCATTCTTTTATTCGTGGCTTTCTTTTACAAAGTTTGCTTGTGAGTTATACACTATTTCTTGGGTTGGTTGCCATTTGTGTTTAATAGGTACAAATTATTAAGGTTGGAGTGTCTTATAAGAGAACAAGGCTCCATTAAGGTGTCAAAGTGAAAGATGTGGACAAGAGTCGAGGGTGTGTTATGACTTTAGCCAAAATATTACTACAATATTTATCTCTGAGTACATATACAAATGTCTTGAACCATTCTAGGCACTGTCCTAATAAATTATTTCAGCAATGTGATAATTTTCCTAGGAATAATATTCTTTCTCTATAGGGGAGAAGGAACAACAACATATAAATAACAAACTAGCTAGTTAGAAAATGAGAATAAGAGGAACAACAGTTAAGATAAGAAAAAAAACGTTTCTTCGTGACAATGTCTAGACAGTTGTCCAAAACTTTTCATGTAAGATGTCACTTGGTTGATGATGCCATTTTCTTTTTTTAATGGAGGTTGATGAAGCCACTTGTCAAAAAGGAATTCTAAGTTAGTGTTTGGGACAGTTCCTAGCATGACTCAAGCCATTTGTTATCCACTCATACATAAAAGCTGTAGTAATTTTTTTAAAAAATCTTTCAACTTCAAATTCCTTAAAACCCTTATATTTGCCAACAAATCTTGGTTCTCTCTATTTCTGTTCTCGGAGTCTTCGGCTTCTGTTGTTGTAGATAGAGGGGCAATTTTCTCATTCCAGCTCTAGAAATATAGAGCATTGAAGCAAGAGTAGAGTGGAGGACAATTCACAGGAAGAAGAAAAGCGTTTGTGAGGAAAATTAGAGCGTGAGCAGTATTATAGTAAGGTGAATAAATCAAAAGAGGGTTGTTTCTTTCGAGTGTGTAGTGGTCTTTTGAGTATTTTACTATCTTGATATTATTTTTGGCATTTACGGCTATGGTTTTTTCCCTTGTTGAAAGGGGTTTTCACAATAAATTGTGTTCTTGTTTCTCTTTCTGTTCTCGCTAATTTTTTTGTTTTGGTGCTGCTTTTTTTTAATTCATGTTTATGTATCTTGAATATTATTTCTGTGAGCTATTTTCCTCAAAAATGCTGTTTTTGATGTCACAATGAGCAGAATCGTTAATGATCATTAATATCAAGAACTTGTCTTATATTTGTTGTCTAAGGGTTTCAAAAAATGTCTGTAAGGATATGGCCCGTTGCTTTGGCTCTTAAGATTTTGGGATTTTTCTTTTTGATGACCGTGCGGCATCGGCTTTCACGCACCTCGACTAATTCCACGGAATACCTGCCACTAGCAACATGCACTAGGTAACACTGTCCACAAAGGCTAGGACAGATGGAAAGAATCACCTAGTGTTTTTTTTCTTCACCGAGTTTTGAACTTCAGACCTCAAGGTTCTCAACCAGTTCATTGACTCAAATTCTTCCAAATGGTTTTAGAATTAAACTTAGGCAGGGTAGTTTTCACTACTGTCTTCTCTCTACCTATTCCACCAACCTGTGCCTCTCTATGTTCATTTTGTCAAGCTATTTGTAGGCACACTCCTTAGTCTATTGAGCTTTCTCTCTCTACTCCAAATAAAGAAAAAGTTGGAAAAAAAAGTGAGGAAAAGAATAAACAAAAGAAGGAAGAGAAAGGAAGTAGAATAGAGAAGTCGTCAAATCCTAGAACCGGATTATACGTGTGGAACTGTCTTAGAGAACCTGTCCCACATCGATTGAGTCGTGGTTTTAAAAAGTTTTTTCATGGTAAATTACAAACAATAACCACAACAACAACAATATACCCAGTGTGTTCCTACCAAGTGGGGTCTTGGGAGGGTAGAGCGACGCATAGCTTACCCCTACCTAAGAGGTAGAGAGGTTGTTTACAATAGACCCTCGCCTACAAGGTAAGTTACCAGTTTCAAAAAAGAAAAAATACGAGGTGTTGAGCTACTCCCTTCTCCACTTTTAGTATTAGATAATGAGTTGGATACTTAGATTCTTTCTCTTATAACTAGGATGTCGATTGTTGTCAATATGGAGTTACCAATGGACAACATAGAAAACGTATTCTGTGGAAATTCTGCTCTTCTCATTTTCTACCCTTCTTTGGGGCTTAGAAAGGAGCTGGTGAGTTGCATATGGGACATGCAAAGAGAATGCTGGTACAAATGCTTATATTCTATTCTATCATTTTGTGAAGTTATCAATCCACCATTGAGTGCTTTAGTGCACTAAAATTTTTGTGTCACTTGTTCTAATAATACTGAATCTATCAAACAGTTATTTTGCACCTCTCCTCCTACCCAAGGAAAGGACAAATATCCTACTGTCAGATAATCTGCCACACGCTCTTAAGCACTTTCACTTTACTGGTAACTATATGAAATTTAATTCAGGCTGACATTTCATTTCTTTAAACCGGGGTAACTAGACATCCTTCGAGTACAGTGTTCCCCTACCCATCGCCTTTTCTTGTTTTGCAGCTTGCATGTATATATTGTAAATCTGAGATTCCGTGTGCTTGTTTAATGATTCAAGAGCTCTGTTCTTTCGAATAAGTTATTGCTTCTTATTGTGGCGTCAAAACAGTTTTCATCTTGTTACCATGTGTTGTATATGCAAATAAACCTGAATTTGAACAGAGCAGAGGTTGTTTTGGTTGCTGTGCAAAATCTCAACCAGTTATTGCTGTGGATGAACCATCTAAAGGACTACGAATACAAGGAAAGTTGGTGAGAAAACAGAGTTTGTCGGATGATTTTTGGAGCACCAGTACATGCGATCTGGAGATTAGTACTGTTCAATCTCATAGAAGTATGTCTTCCATCAGTATCTCAAATCAGAGCCTCAGTCAACAGAGTGGCACTGGCAATGCTAGCAACAATAATGAATTCGTAAATCACGGTAAGTTTAATGCTCTTATGACTTGGCTTTTTTATATATTAGAAACCTATTCACTTCTGTGGCCTGACATTCAAGTCTTCATTTCACGACTTTCATTCAAAAACATAAGGCATTCCTAGTCGTGAAGTAGGTCATGCATTAATAGGGGCTATTTAATTTTTGTTTGCTATCTTGACTGTCTGCTGATTTCAGGCTATCTTCTTTGGAACCAGACCAGGCTTCAGTGGCTAGCAAGTAAAAATCCAGAGAACCAAAGAGTCATTGAAGAACCGATGTTAACGTGAGAACCTTGCTTATGTTTATGTTTGTGATGAAGCGTTTCTACACTACAGTTGCAAATCTCATGGAATCAAATGTTAGGACTTCCCTTTAAGTGTTATTATGCCACTAGAAGACTCAGAAATAAGCTTTCACTTTTTCTTTATTACTGTGCTGTCTGGTC</genome_strand>
        <mrna_strand>CTATATGGTTTTGCTCTGAGGTCAG...........................................................................................AAAAAGATTGGATTTTTATGTTTGGGGTTCTGTGATCTGGTTCATTTTGGAGCTTTGAAGAGGAATTGGATAGTGATTCTTGTATGTTTAGATATATGATGCTGTCTAGTTCTTTCAGTGCTTGGATCAGTCATTTTCTAGCTTGCATGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGTTTTGGTTGCTGTGCAAAATCTCAACCAGTTATTGCTGTGGATGAACCATCTAAAGGACTACGAATACAAGGAAAGTTGGTGAGAAAACAGAGTTTGTCGGATGATTTTTGGAGCACCAGTACATGCGATCTGGAGATTAGTACTGTTCAATCTCATAGAAGTATGTCTTCCATCAGTATCTCAAATCAGAGCCTCAGTCAACAGAGTGGCACTGGCAATGCTAGCAACAATAATGAATTCGTAAATCACG................................................................................................................................................................................................GCTATCTTCTTTGGAACCAGACCAGGCTTCAGTGGCTAGCAAGTAAAAATCCAGAGAACCAAAGAGTCATTGAAGAACCGATGTTAACGTGAGAACCTTGCTTATGTTTATGTTTGTGATGAAGCGTTTCTACACTACAGTTGCAAATCTCATGGAATCAAATGTTAGGACTTCCCTTTAAGTGTTATTATGCCACTAGAAGACTCAGAAATAAGCTGTCACTTTTTCTTTATTACTGTGCTGTCTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327291" ref_strand="+" ref_description="SGN-E327291 [cTOC-19-J13]">
      <seq>ttttgctctgaggtcagaaaaagattggatttttatgtttggggttctgtgatctggttcattttggagctttgaagaggaattggatagtgattcttgtatgtttagatatatgatgctgtctagttctttcagtgcttggatcagtcattttctagcttgcatgggaggttgttttggttgctgtgcaaaatctcaaccagttattgctgtggatgaaccatctaaaggactacgaatacaaggaaagttggtgagaaaacagagtttgtcggatgatttttggagcaccagtacatgcgatctggagattagtactgttcaatctcatagaagtatgtcttccatcagtatctcaaatcagagcctcagtcaacagagtggcactggcaatgctagcaacaataatgaattcgtaaatcacggctatcttctttggaaccagaccaggcttcagtggctagcaagtaaaaatccagagaaccaaagagtcattgaagaaccgatgttaacttggaacgtttcctatgatagcttatttgggactaacaagcgattccctcagccaattcctctctcggacatggtcgactttcttgctgatatttgggagcacgagggtttgtacgattaaccatgctgatcgatattgtgtattgatatcttcttcgctttatctgaatttttctggttgttttaacttctgataaattgtgcatagtttccagtatanagggagtgatggaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="18746" stop="28674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18952" g_stop="18968" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18969" i_stop="19059" i_length="91">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.297" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19060" g_stop="19210" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="168" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19211" i_stop="26909" i_length="7699">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26910" g_stop="27166" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="425" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27167" i_stop="27358" i_length="192">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27359" g_stop="27446" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="513" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27447" i_stop="28031" i_length="585">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28032" g_stop="28098" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="580" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28099" i_stop="28202" i_length="104">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28203" g_stop="28374" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="751" r_length="171" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E327291" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18952" e_stop="18968"/>
          <exon e_start="19060" e_stop="19210"/>
          <exon e_start="26910" e_stop="27166"/>
          <exon e_start="27359" e_stop="27446"/>
          <exon e_start="28032" e_stop="28098"/>
          <exon e_start="28203" e_stop="28374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTCTGAGGTCAGGTAAAAAAAGTTGTCTTTTTTTATTTTCTTTCTATTTCTTATTCTGATTCTTGAAAAGTGAAAAGGGTTGTTTATTTTCTTGTTGGAACAGAAAAAGATTGGATTTTTATGTTTGGGGTTCTGTGATCTGGTTCATTTTGGAGCTTTGAAGAGGAATTGGATAGTGATTCTTGTATGTTTAGATATATGATGCTGTCTAGTTCTTTCAGTGCTTGGATCAGTCATTTTCTAGCTTGCATGGGGTATGTATTCAGATTCTTACAAATCAGTTTACTGTTTCTTGAATTGTTGTTGGTTTAGTGAAAGTTTTTTCTGTTTTTTTATTCAATTTGCTGAATTCTAGGCTGTTTGAAAGTGATTATATGTGTGTGATGGGGCTTTTTAGTGGTTTGTTGAACATATTATTTGATGTCATTGACTTTTTTATGAAAATTGTGATTCATTTGCCTATTTGGAAATATTTAGCTGCTATTTGTATATTTTAGCCACTGAAAAGGACACCCAAAGGGGGAAAATGGAATTGGAGGAAGGGGTTTTGCTCCTCAAGAGTGAGGGAGGAGAAAGTTTAAAACTTGTATGTTCTTTAGATGGAGGAGAAGGGGTTTGGGGGGTGGGGGGAGGGGGTGAATCAGATGTCTAGGAAAGTGAACTAAGAAATTTCTTGCCATCTGTCATAGTGGACAGAGTTACATTATCTAGTGTTTGGTGTTTGATCTTCCAAACTATGGTTTGAAGAGTAGCTGATAAAGTGAACTTCCTTTTGCAAAAGGCTAATTCTATCATATGATTATTTGTAATCTGTTAATTTAAATATTTGGGCATATGATTTGCGTTAATATTGATTCTTTCAAGACATAATTTCTGAAAATTTTGAAGAGAAACAAAATTGAAATGATTAGATAAATCAGATTAGGTTGAGGAAATAACCACATTTATCATTTTCAAGAACTAAAGGACTGTTTCAAACTTCTAATGAGCACCATCAGCTGTGGGACTTCAAATGCAATTAATAGTCGGTAGAATATTTAGGTGTGCTCTATGTACCTCACCTTGGAGTAATGGAATAATTAGCATAGAAGTAATCTATCTTGGAATATAAGATTACCAAAATGGATATTGTCATTAGCATGGGATGCTGGATACCTTTCATGTTTCATTTTTTCGGAATCATCTTTTCTTCTCCTATTGCTTTCAGTAAGCTTAGTTATTGGGAGATGCTAGAGCTGGTTTGGAAGGGTTTGTTATCTTGCAAAACAGTTTTAAGTGTATTTTTACTAGCAAATAGTCGCTACCCGAAAGATTGGTATATACATTCTGTATGCTTCCGGAAAGGGGGAGAGGAAGGGGAGAAGGGAGTTGGAGGTGAACTGGCTAATCTACTTCCACTTCATGAAGTATGTAACTATGTTAACCTTCAACTCTGGTTGTCTTGAATAGATTAAAAAGGAAATACAAGATATACTTCCTCCAGCCCTTCCAATTTTGCGAGGCTTGAAAAGACTTAAATCATTTCTACTATCTGTTGCTTCATTTTGCTTTGTATCTTGATAGTTTTCATTTTTTCTTTTAATTCCCTCTTAAGACGAAGGTCTATCAGTAACTGCCTCACTACCCCACAAAGGTAGATGTAAGGTCTGTGTGCATCTTACTCTCCCCAGATGCCATTGTGGGAGTATCTGCTATCTGGTTATGTTGTTGAAAAAAACTTAAATTGAAGGGAAGCATACTCTTCTAGTTTTACTCCATATCATTGTTCTCCTAAGAAAACATAAGGTAACAGCCCATCTTCCTTCCTCCTTTAATTCACCTTCTATAAGTCATTTTCTTAGAGTTTGTTACTTGGTGTGTCATATGGGTAATCAGTGAGGATGAGTTTGGAAATTTTTTGAGTTATCAATCCTTGAACCTCCGAAGTTAAAGAGGGCCTTTGATATATGATTTAGAAGGGGGTGGGGTGAGGGGGATGGGAAGGAGGCTTGAAAGTCTCTTTGGAGCAGCTTGTGATTGCTGAAAATCTGAGAGATATGTTTTATCTTGATATATTATGTCATATATGGTGGCTATTTGTGATATGATTTTGGATAACATCTGTCAGACTATGACTCTAAGTGGAGTTGTCATCTGGATATCTTTTATTTCATGTGTGTGTTCACTAATTGTTCCCAGTTACTTTACTGTCTTGTCTTCAGTACATCCCAATTTTTCTGATCTCTTCATTTGATTTTAGCTAATCTGTATGAAAGATCATTTGGTTGTCCTTTCCCAATTTTGTGCTAAGTGAAGGGCCTTATGGTTTATGAAAGGGAGGATAAGGAAGTCATAAAAATACGGAGATTAGGCTTGTTTTGTCCATCTCAATTTGTTGAAAAGCATGTGCCAAAAGAATGCTTGGTAGAAATTCATTCTTGGAGATCAAGAATGAAGAGTGCGGAGGAGACCTTTGGGCAATTTGTCCTTTTCTCTATTTTTATGATAGGAACCGGCAACTCATATAGTTAAAAATAGAGAGTCCATTCTCTCATCCCAACACATAAAGTAGAACATAGAAGCAAGAGCATAGAGCAATTCAGACATAAGAAATACAATCTTTAAGATAAATAGAGTACAAGCTGTATATAGTGAGCTATGTAATCAAAAGATGATTGTTTCTCTTAATTATGTAATGATACTAACCCTTCGGGGTGTCAGGTGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCTTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGGTTAGCTCGTGCACCAGGCTTGCCTAGTACGGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCCTGTGTACATCCAAAGGGTAGCGGCTACGGGTATCCCTTGTCGTCAAAAATAAAATAAAATTATGTAATAATACTATAGAGTGAAAATTCTGTTACTATAGTCATATTATTTTGCCACTCTAATAGAGCTTTCCATGTTAACATTTTGATGGTCTTGGTCTCTTTATTTTTTTAAACAGAGAGAACTTTTTCTATAGGAGATTACTCTAGGCAATACAACAAATCTGAACCCATAAAACCTGAGGATTATAAAAACAGCTAGTGCAATCAGAATTACTTTGGATATTTGTTTACACTTTTTGTGGGGAGCTATACCTTGGCACTTAAAATTACAGTAGAGTGGCATTCTCTACAATTGAATTGGATTATATTATTTTTACTAAAGCTGGCAAGGAAATGATGTGGCTCAAACTGTTTCTTCAAGAAATTTGGCTTGTGGAAGAATGAGTATGTGGTCTATTAGGACAGTCAAAGACTCAAAGTGTGACGGACATGAACAATAACTAAACATATTGATGTGAGATTTCATTGGATTCGAAAAAATGTAGAGACTAGATAACAAACTCTTACAAAACGTGAAAAAAGTAGAGACTGGAATGATTTCTTACAAATCGTGAAGATTTTCATTTGTGAGAATCCTTTAAATATGTTGACCAAGATAGTAACAAGAGACAAGTTTAAGTGTGTGAAAACCCTGTCGACTATGTTGCTCGGACAGACTTTGGTGTAGGTTTTTAATACCATGCTGATCTGGAGGTCAGACTCCTCATCACTTAAATTTGAGGATTTGGTGGTACGGATGCAAGTGCGGATACATGTGCTCGGATACGTCCATAAATGTCATATTAAAACATAAATAAGTATGCATTTTAATTAATCAAAGTTATTGAATTAAATAAATACGATTTAATTCTTTTATAAACACCTAATAGTTTGTTCTAAGATATCTCGTGTAAATCAAAATATTCTTGTTCTTTTTGGTCATACTTGTAGTCAAGGCACCCTAGGTAAGTTGACCAAATCCAGTGCGATGCCAAACCCACACCCAAACTATGTCGAATGGACATGGGTGCAACAAGGATTCGAAGGGCTTGTGTGTAGCATAGCCTCTAGGCGCATCTAGATATTCAGTGTTACCTTCATCAGGCTTAGGTGAATTGGTCTGGAGGGGTGAATTTATGGGGTCCATTCCCAATTTATTAAAAAACCATGTGCCAAAAAAACACTAGGTAAAAATTCATCTTAGAGGTCAAGAATAAAGTATGCGGGGGAGAACTTTCGAGCAATTGTTCCGACAAGTGACCTCTTGCATGAAAAGTTTTAGACAAGTGATTAGACACTTGTCATGAATAAAAGCATATTCATGTTGATCATTTGCAATCATAAACTAACAAGTCTCCCGCAACTAATCCAATTCTCTTTCGGGTAGAATCTGAATCTTAACTGCTCTTTTTCTTAATTCTTTTTTTAGTAGCCTACTTTGTTATTTGAATTTTGTGGTTCCTCCTTACTCATTGAGGAATTGTTGGCGAATATAATTGAAAAGGAAAATAAATATGTATACTGAAAGGTAAAAAAATATTTGTATAAAGTGATACGCGGCTTCTTGAACTCGTCCGCATTTTTCACTTTGACACCTTAACGAAAACTAGCACCTATTGAACATCTAAATTACCCAAAAACTGTACCTATTAAACACAAAAGGTGATATGACAATGTAAGCGTTCCTCACTTTCCTTGGGTGTGTAAATGCATCACAAATAATGATTTGTTTGTTTTTTTTGTTTGAAAAAACTGACATCTTTTGTGCATGACTATAACCAAATGATCTTACTTCACTTCTTGTTTAACAATTCGCCTCCACTCCAGCGCCACAAGTTTACCATTTTCATTCATCTGATTTGGCATTCAGGGAAATAATACTTCTGGCACTTGAATCTGAAGAAAGAAAGAAAGAAGATTCTTGGGTCATCTTGGTTAAAAATGTAGGCCAATATCCATCAATCCATTTCCGAGCAAACACCACCATTCAACAATCATTCTGTTAAACTATCTCAGAGAATTAGATAGAATCAATTTTAAATGACACAATCTGGATCCCCTCTCTATCTCTTCTTTATCGAACCGTTTATCTTCCACAAACATCTCAACCATTCTGTTAAGCTATATACTGTGTTTCATTGATTATTTTCACTTTTGTACTAAATCTGAACATATTGTTATAAGAAGGAAAGAAAACGGTGAGCTTTGTCGGAGGGGGTGGGGGTGACAACTAGAGACGAGGGTAAGAACATGAAAGTGGAAAGGGTTGGGTGAGTGGCTGTGAGGTGTAGAGAATGAGTTCCCCTTTTTCTTTTTTTCATTGATTATTTTTTTGAATTATAAGGGGTTCAGAACTATTTTCTTAATTGATTTATAATTATTTTGGGCCCATTCCCATAAGTCATTCTTTTATTCGTGGCTTTCTTTTACAAAGTTTGCTTGTGAGTTATACACTATTTCTTGGGTTGGTTGCCATTTGTGTTTAATAGGTACAAATTATTAAGGTTGGAGTGTCTTATAAGAGAACAAGGCTCCATTAAGGTGTCAAAGTGAAAGATGTGGACAAGAGTCGAGGGTGTGTTATGACTTTAGCCAAAATATTACTACAATATTTATCTCTGAGTACATATACAAATGTCTTGAACCATTCTAGGCACTGTCCTAATAAATTATTTCAGCAATGTGATAATTTTCCTAGGAATAATATTCTTTCTCTATAGGGGAGAAGGAACAACAACATATAAATAACAAACTAGCTAGTTAGAAAATGAGAATAAGAGGAACAACAGTTAAGATAAGAAAAAAAACGTTTCTTCGTGACAATGTCTAGACAGTTGTCCAAAACTTTTCATGTAAGATGTCACTTGGTTGATGATGCCATTTTCTTTTTTTAATGGAGGTTGATGAAGCCACTTGTCAAAAAGGAATTCTAAGTTAGTGTTTGGGACAGTTCCTAGCATGACTCAAGCCATTTGTTATCCACTCATACATAAAAGCTGTAGTAATTTTTTTAAAAAATCTTTCAACTTCAAATTCCTTAAAACCCTTATATTTGCCAACAAATCTTGGTTCTCTCTATTTCTGTTCTCGGAGTCTTCGGCTTCTGTTGTTGTAGATAGAGGGGCAATTTTCTCATTCCAGCTCTAGAAATATAGAGCATTGAAGCAAGAGTAGAGTGGAGGACAATTCACAGGAAGAAGAAAAGCGTTTGTGAGGAAAATTAGAGCGTGAGCAGTATTATAGTAAGGTGAATAAATCAAAAGAGGGTTGTTTCTTTCGAGTGTGTAGTGGTCTTTTGAGTATTTTACTATCTTGATATTATTTTTGGCATTTACGGCTATGGTTTTTTCCCTTGTTGAAAGGGGTTTTCACAATAAATTGTGTTCTTGTTTCTCTTTCTGTTCTCGCTAATTTTTTTGTTTTGGTGCTGCTTTTTTTTAATTCATGTTTATGTATCTTGAATATTATTTCTGTGAGCTATTTTCCTCAAAAATGCTGTTTTTGATGTCACAATGAGCAGAATCGTTAATGATCATTAATATCAAGAACTTGTCTTATATTTGTTGTCTAAGGGTTTCAAAAAATGTCTGTAAGGATATGGCCCGTTGCTTTGGCTCTTAAGATTTTGGGATTTTTCTTTTTGATGACCGTGCGGCATCGGCTTTCACGCACCTCGACTAATTCCACGGAATACCTGCCACTAGCAACATGCACTAGGTAACACTGTCCACAAAGGCTAGGACAGATGGAAAGAATCACCTAGTGTTTTTTTTCTTCACCGAGTTTTGAACTTCAGACCTCAAGGTTCTCAACCAGTTCATTGACTCAAATTCTTCCAAATGGTTTTAGAATTAAACTTAGGCAGGGTAGTTTTCACTACTGTCTTCTCTCTACCTATTCCACCAACCTGTGCCTCTCTATGTTCATTTTGTCAAGCTATTTGTAGGCACACTCCTTAGTCTATTGAGCTTTCTCTCTCTACTCCAAATAAAGAAAAAGTTGGAAAAAAAAGTGAGGAAAAGAATAAACAAAAGAAGGAAGAGAAAGGAAGTAGAATAGAGAAGTCGTCAAATCCTAGAACCGGATTATACGTGTGGAACTGTCTTAGAGAACCTGTCCCACATCGATTGAGTCGTGGTTTTAAAAAGTTTTTTCATGGTAAATTACAAACAATAACCACAACAACAACAATATACCCAGTGTGTTCCTACCAAGTGGGGTCTTGGGAGGGTAGAGCGACGCATAGCTTACCCCTACCTAAGAGGTAGAGAGGTTGTTTACAATAGACCCTCGCCTACAAGGTAAGTTACCAGTTTCAAAAAAGAAAAAATACGAGGTGTTGAGCTACTCCCTTCTCCACTTTTAGTATTAGATAATGAGTTGGATACTTAGATTCTTTCTCTTATAACTAGGATGTCGATTGTTGTCAATATGGAGTTACCAATGGACAACATAGAAAACGTATTCTGTGGAAATTCTGCTCTTCTCATTTTCTACCCTTCTTTGGGGCTTAGAAAGGAGCTGGTGAGTTGCATATGGGACATGCAAAGAGAATGCTGGTACAAATGCTTATATTCTATTCTATCATTTTGTGAAGTTATCAATCCACCATTGAGTGCTTTAGTGCACTAAAATTTTTGTGTCACTTGTTCTAATAATACTGAATCTATCAAACAGTTATTTTGCACCTCTCCTCCTACCCAAGGAAAGGACAAATATCCTACTGTCAGATAATCTGCCACACGCTCTTAAGCACTTTCACTTTACTGGTAACTATATGAAATTTAATTCAGGCTGACATTTCATTTCTTTAAACCGGGGTAACTAGACATCCTTCGAGTACAGTGTTCCCCTACCCATCGCCTTTTCTTGTTTTGCAGCTTGCATGTATATATTGTAAATCTGAGATTCCGTGTGCTTGTTTAATGATTCAAGAGCTCTGTTCTTTCGAATAAGTTATTGCTTCTTATTGTGGCGTCAAAACAGTTTTCATCTTGTTACCATGTGTTGTATATGCAAATAAACCTGAATTTGAACAGAGCAGAGGTTGTTTTGGTTGCTGTGCAAAATCTCAACCAGTTATTGCTGTGGATGAACCATCTAAAGGACTACGAATACAAGGAAAGTTGGTGAGAAAACAGAGTTTGTCGGATGATTTTTGGAGCACCAGTACATGCGATCTGGAGATTAGTACTGTTCAATCTCATAGAAGTATGTCTTCCATCAGTATCTCAAATCAGAGCCTCAGTCAACAGAGTGGCACTGGCAATGCTAGCAACAATAATGAATTCGTAAATCACGGTAAGTTTAATGCTCTTATGACTTGGCTTTTTTATATATTAGAAACCTATTCACTTCTGTGGCCTGACATTCAAGTCTTCATTTCACGACTTTCATTCAAAAACATAAGGCATTCCTAGTCGTGAAGTAGGTCATGCATTAATAGGGGCTATTTAATTTTTGTTTGCTATCTTGACTGTCTGCTGATTTCAGGCTATCTTCTTTGGAACCAGACCAGGCTTCAGTGGCTAGCAAGTAAAAATCCAGAGAACCAAAGAGTCATTGAAGAACCGATGTTAACGTGAGAACCTTGCTTATGTTTATGTTTGTGATGAAGCGTTTCTACACTACAGTTGCAAATCTCATGGAATCAAATGTTAGGACTTCCCTTTAAGTGTTATTATGCCACTAGAAGACTCAGAAATAAGCTTTCACTTTTTCTTTATTACTGTGCTGTCTGGTCAGCTTGAGTGCACCCGAGACTAATTCACGGGGCACCCGCTATCAGAGGTGGAGCCAAAATTTTCAGTTATGGGTTCTGAACCACAACCTTGTTTGTTTATTGGATTCTACAATGATTATTAGACGTCTTAAATGATTTTTAAAAATACAGATATGTCAAACCCATAACTGGAAGGTACACTCGTGCCTGCTAGCTCCGATGTCCAACATAGGTATGGGTTAACTTTGTCCACCAAGGCTTGGATAGATTAGCAGAAAACACCTAGTGCTTAATAAAGCTTTGTTTAAACATCGTTTTTCATCGTTGAATATGGCTGCCACACTTTTCCATACACGGCAATTTTCCTGAGTTTGTTTTGCTCTTACATTATTTGAAGTTCATCTATATTTCTTGGCTAATTGTGCTTGTTCTGTCTCGCTATAGTTGGAACGTTTCCTATGATAGCTTATTTGGGACTAACAAGCGATTCCCTCAGCCAATTCCTCTCTCGGTGAGTCACTTCTCACTTCTCGGAACTTGTATTCACTTCTTTTTATCTTCCATTTGAAGTACAGACTCGGATTAACTTTTCTCCAAATTTCCTGTTCTTTATAGGACATGGTCGACTTTCTTGCTGATATTTGGGAGCACGAGGGTTTGTACGATTAACCATGCTGATCGATATTGTGTATTGATATCTTCTTCGCTTTATCTGAATTTTTCTGGTTGTTTTAACTTCTGATAAAATTGTGCATAGTTTCCAGTATAGAGGGAGTGATGGAGGATG</genome_strand>
        <mrna_strand>TTTTGCTCTGAGGTCAG...........................................................................................AAAAAGATTGGATTTTTATGTTTGGGGTTCTGTGATCTGGTTCATTTTGGAGCTTTGAAGAGGAATTGGATAGTGATTCTTGTATGTTTAGATATATGATGCTGTCTAGTTCTTTCAGTGCTTGGATCAGTCATTTTCTAGCTTGCATGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGTTTTGGTTGCTGTGCAAAATCTCAACCAGTTATTGCTGTGGATGAACCATCTAAAGGACTACGAATACAAGGAAAGTTGGTGAGAAAACAGAGTTTGTCGGATGATTTTTGGAGCACCAGTACATGCGATCTGGAGATTAGTACTGTTCAATCTCATAGAAGTATGTCTTCCATCAGTATCTCAAATCAGAGCCTCAGTCAACAGAGTGGCACTGGCAATGCTAGCAACAATAATGAATTCGTAAATCACG................................................................................................................................................................................................GCTATCTTCTTTGGAACCAGACCAGGCTTCAGTGGCTAGCAAGTAAAAATCCAGAGAACCAAAGAGTCATTGAAGAACCGATGTTAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAACGTTTCCTATGATAGCTTATTTGGGACTAACAAGCGATTCCCTCAGCCAATTCCTCTCTCG........................................................................................................GACATGGTCGACTTTCTTGCTGATATTTGGGAGCACGAGGGTTTGTACGATTAACCATGCTGATCGATATTGTGTATTGATATCTTCTTCGCTTTATCTGAATTTTTCTGGTTGTTTTAACTTCTGAT-AAATTGTGCATAGTTTCCAGTATANAGGGAGTGATGGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697853" ref_strand="+" ref_description="SGN-E697853 [FA04CA02]">
      <seq>cctatatacctgaatttgaacagagcagaggttgttttggttgctgtgcaaaatctcaaccagttattgctgtggatgaaccatctaaaggactacgaatacaaggaaagttggtgagaaaacagagtttgtcggatgatttttggagcaccagtacatgcgatctggagattagtactgttcaatctcatagaagtatgtcttccatcagtatctcaaatcagagcctcagtcaacagagtggcactggcaatgctagcaacaataatgaattcgtaaatcacggctatcttctttggaaccagaccaggcttcagtggctagcaagtaaaaatccagagaaccaaagagtcattgaagaaccgatgttaacgtgagaaccttgcttatgtttatgtttgtgatgaagcgtttctacactacagttgcaaatctcatggaatcaaatgttaggacttccctttaagtgttattatgccactagaagactcagaaataagctttcactttttctttattactgtgctgtctggtcagcttgagtgcacccgagactaattcacggggcacccgctatcagaggtggagccaaaattttcagttatgggttctgaaccacaaccttgtttgtttattggattctacaatgattattagacgtcttacatgatttttaaaaatacagatatgtccaacccataactggaaggtacactcgtgcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="26585" stop="28099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26882" g_stop="27166" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27167" i_stop="27358" i_length="192">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27359" g_stop="27799" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="726" r_length="441" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E697853" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26882" e_stop="27166"/>
          <exon e_start="27359" e_stop="27799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAAACCTGAATTTGAACAGAGCAGAGGTTGTTTTGGTTGCTGTGCAAAATCTCAACCAGTTATTGCTGTGGATGAACCATCTAAAGGACTACGAATACAAGGAAAGTTGGTGAGAAAACAGAGTTTGTCGGATGATTTTTGGAGCACCAGTACATGCGATCTGGAGATTAGTACTGTTCAATCTCATAGAAGTATGTCTTCCATCAGTATCTCAAATCAGAGCCTCAGTCAACAGAGTGGCACTGGCAATGCTAGCAACAATAATGAATTCGTAAATCACGGTAAGTTTAATGCTCTTATGACTTGGCTTTTTTATATATTAGAAACCTATTCACTTCTGTGGCCTGACATTCAAGTCTTCATTTCACGACTTTCATTCAAAAACATAAGGCATTCCTAGTCGTGAAGTAGGTCATGCATTAATAGGGGCTATTTAATTTTTGTTTGCTATCTTGACTGTCTGCTGATTTCAGGCTATCTTCTTTGGAACCAGACCAGGCTTCAGTGGCTAGCAAGTAAAAATCCAGAGAACCAAAGAGTCATTGAAGAACCGATGTTAACGTGAGAACCTTGCTTATGTTTATGTTTGTGATGAAGCGTTTCTACACTACAGTTGCAAATCTCATGGAATCAAATGTTAGGACTTCCCTTTAAGTGTTATTATGCCACTAGAAGACTCAGAAATAAGCTTTCACTTTTTCTTTATTACTGTGCTGTCTGGTCAGCTTGAGTGCACCCGAGACTAATTCACGGGGCACCCGCTATCAGAGGTGGAGCCAAAATTTTCAGTTATGGGTTCTGAACCACAACCTTGTTTGTTTATTGGATTCTACAATGATTATTAGACGTCTTAAATGATTTTTAAAAATACAGATATGTCAAACCCATAACTGGAAGGTACACTCGTGCCTGCT</genome_strand>
        <mrna_strand>CCTATATACCTGAATTTGAACAGAGCAGAGGTTGTTTTGGTTGCTGTGCAAAATCTCAACCAGTTATTGCTGTGGATGAACCATCTAAAGGACTACGAATACAAGGAAAGTTGGTGAGAAAACAGAGTTTGTCGGATGATTTTTGGAGCACCAGTACATGCGATCTGGAGATTAGTACTGTTCAATCTCATAGAAGTATGTCTTCCATCAGTATCTCAAATCAGAGCCTCAGTCAACAGAGTGGCACTGGCAATGCTAGCAACAATAATGAATTCGTAAATCACG................................................................................................................................................................................................GCTATCTTCTTTGGAACCAGACCAGGCTTCAGTGGCTAGCAAGTAAAAATCCAGAGAACCAAAGAGTCATTGAAGAACCGATGTTAACGTGAGAACCTTGCTTATGTTTATGTTTGTGATGAAGCGTTTCTACACTACAGTTGCAAATCTCATGGAATCAAATGTTAGGACTTCCCTTTAAGTGTTATTATGCCACTAGAAGACTCAGAAATAAGCTTTCACTTTTTCTTTATTACTGTGCTGTCTGGTCAGCTTGAGTGCACCCGAGACTAATTCACGGGGCACCCGCTATCAGAGGTGGAGCCAAAATTTTCAGTTATGGGTTCTGAACCACAACCTTGTTTGTTTATTGGATTCTACAATGATTATTAGACGTCTTACATGATTTTTAAAAATACAGATATGTCCAACCCATAACTGGAAGGTACACTCGTGCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286083" ref_strand="+" ref_description="SGN-E286083 [cLES-13-I2]">
      <seq>ccctcagccaattcctctctcggacatggtcgactttcttgctgatatttgggagcacgagggtttgtacgattaaccatgctgatcgatattgtgtattgatatcttcttcgctttatctgaatttttctggttgttttaacttctgataaaattgtgcatagtttccagtatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27889" stop="28656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28077" g_stop="28098" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28099" i_stop="28202" i_length="104">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28203" g_stop="28356" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="176" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E286083" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28077" e_stop="28098"/>
          <exon e_start="28203" e_stop="28356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCAGCCAATTCCTCTCTCGGTGAGTCACTTCTCACTTCTCGGAACTTGTATTCACTTCTTTTTATCTTCCATTTGAAGTACAGACTCGGATTAACTTTTCTCCAAATTTCCTGTTCTTTATAGGACATGGTCGACTTTCTTGCTGATATTTGGGAGCACGAGGGTTTGTACGATTAACCATGCTGATCGATATTGTGTATTGATATCTTCTTCGCTTTATCTGAATTTTTCTGGTTGTTTTAACTTCTGATAAAATTGTGCATAGTTTCCAGTATAG</genome_strand>
        <mrna_strand>CCCTCAGCCAATTCCTCTCTCG........................................................................................................GACATGGTCGACTTTCTTGCTGATATTTGGGAGCACGAGGGTTTGTACGATTAACCATGCTGATCGATATTGTGTATTGATATCTTCTTCGCTTTATCTGAATTTTTCTGGTTGTTTTAACTTCTGATAAAATTGTGCATAGTTTCCAGTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279140" ref_strand="+" ref_description="SGN-E279140 [cLEL-4-H21](-)">
      <seq>gtgaaccgtacgagccatgacccgggccataagaacccttagatgtctggccaccctcaaatgtcggcatagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaggcaccctgaaattgacctgatatacgagctcttttagggtccccaaactcctctctctccatcaattctgcctctttggcggcgctcacaatagactggaaagaagtcccccctagatgtccgaaacacagctgacctgatagagaaagtcaatcccctcacaaatctacggatcctctctgtttcatttggaataatggccaacgcatgcctagacaactggcaaaaacgcgccttacactctgtaaccgataaaccatcctgtctcagactctcaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="-" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40567" stop="39539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40267" g_stop="39839" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="-" ref_id="SGN-E279140" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40267" e_stop="39839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACCGTACGAGCCCTGACCTGGGCCATAAGAACCCCTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTACTGAAAAGAACCATTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAACTGGCCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTTGCGGCGCTCACAATGGACTGGAAAGAAGCCCCCTCCCTAGATGCCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTCAAACCTCAAGC</genome_strand>
        <mrna_strand>GTGAACCGTACGAGCCATGACCCGGGCCATAAGAACCCTTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAATTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATAGACTGGAAAGAAG-TCCC-CCCTAGATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTACGGATCCTCTCTGTTTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTTACACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTC-AA-CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352040" ref_strand="+" ref_description="SGN-E352040 [cTOS-13-B19]">
      <seq>ggtggtacctctaccccaactttgctgagctccaacaccactactagaaactctatcaccctacctgactgtactctgcaacgacctctaccctgtagagctagtggtctagtatggaatgaagaattaggtcgaggcccaccacgacccctttaagaagtacactgccgcattagatgatcgggatctccacaagtaaaacaaaatctctaacctgggaactgctgtgtggaccctgaaaacccacaataattgcctcgccctgaaggtcgctgctgtgaaccgtacgagccctgaaccaggacataagaacccctagatgtttggccaccctcaaatattgtcttagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaatcaccatgaaactgacttgatatacgggcccttatagggtccccaaactcctccctctcttcatcaattccaactctttggaggcgctcataatggactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="-" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="40845" stop="39769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40545" g_stop="40029" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="-" ref_id="SGN-E352040" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40545" e_stop="40029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTACCTCTACCCCCACTCTGCTGAGCCGCAACACCACTACTAGAAACTCTATCACCTCTACCTGACTGAACTCTGCCACGACCTCTACCCTGTGGTGCTGGTGGTCTAGTCTGGAATGAAGAATTTGGTCGAGGCCCACCACGACCCCTTTGAGAAGTACACTGCCGCATTAGATGATCGGGATCTCCACAAGTAAAACAAAATCTCTGACCTGGGAACTGTTGTGTGGACCCTGAAAACCCACTATAATTTCCTCGCCCTGTAGGTCGCTGTTGTGAACCGTACGAGCCCTGACCTGGGCCATAAGAACCCCTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTACTGAAAAGAACCATTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAACTGGCCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCT--CTCTCTCCATCAATTCTGCCTCTTTTGCGGCGCTCACAATGGACTGG</genome_strand>
        <mrna_strand>GGTGGTACCTCTACCCCAACTTTGCTGAGCTCCAACACCACTACTAGAAACTCTATCACC-CTACCTGACTGTACTCTGCAACGACCTCTACCCTGTAGAGCTAGTGGTCTAGTATGGAATGAAGAATTAGGTCGAGGCCCACCACGACCCCTTTAAGAAGTACACTGCCGCATTAGATGATCGGGATCTCCACAAGTAAAACAAAATCTCTAACCTGGGAACTGCTGTGTGGACCCTGAAAACCCACAATAATTGCCTCGCCCTGAAGGTCGCTGCTGTGAACCGTACGAGCCCTGAACCAGGACATAAGAACCCCTAGATGTTTGGCCACCCTCAAATATTGTCTTAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAATCACCATGAAACTGACTTGATATACGGGCCCTTATAGGGTCCCCAAACTCCTCCCTCTCTTCATCAATTCCAACTCTTTGGAGGCGCTCATAATGGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330288" ref_strand="+" ref_description="SGN-E330288 [cTOD-4-J5]">
      <seq>ttttgtatcatccggggaaggccaatgttgtggccgatgctttgagtaggaagactcatagcatggggagtcttgcatctcttagtgttgaggaaagaccattggctagagatgttcaattgttagctaacagtcttgtccgattacagatctcagaggagagtgatgggatgattgcttttattgaggctcgatcttctttagtcaagcagattcgtgcacaccagtttgatgacgaaaaattatgtctcattcgagacaaagtattgagaggggaagctaaggaggttgtccttgattctgatggtgtcttgaggatcggaggcaggatttgtgtgcccaagacaggcgatttgattagattgatccttgaggaggcccattgttctcgatattctatgcatccgggagaggcgaaaatgtatcatgatctgagtcagcattactggtggtgtgggatgaagagagatattacagactttgttttgaggtgtttgacttgccagttggtcaagtgtgagcaccagtggcctgggggtgtatctcaaaggatgcctattcttacttggacgtgggagtggattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0037D07-bpyqz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0037D07.1" temp_strand="+" temp_description="C07HBa0037D07.1  AC232624.1 htgs_phase:2 submitted_to_sgn_as:gi|205277492|gb|AC232624.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0037D07, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42098" stop="43285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42398" g_stop="42985" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0037D07.1" gen_strand="+" ref_id="SGN-E330288" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0037D07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42398" e_stop="42985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATCCAGGAAAGGCCAATGATGTGGCCGATGCTCTGAGTAAGAAGACTCCTAGCATGGGGAGTCTTGCAGCGCTTAGTATTATGGAGAGACCATTGGCTAGAGATGTGCAGATATTAGCTAACAGTCTTGTCCGCTTGCAGATTTCAGAAGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGGTCTTCTTTAGTCGAGCAAATCCGTGCACACCAGTTTGATGATGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAAGGGAAGCTAAGGAGGCTGTCCTTGATTCTGATAGTGTATTGCGGATCGGAGGCAGAATTTGTGGGCCTAGGACAGGCGATTTGATTAGATTGATTCTTGAAGAGGCCCATTGTTCTCGGTATTCTATCCATCCGGGAGCGGCGAAGATGTATCATGATCTGAGTCAACATTATTGGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTTTTTCGAGGTGTTTGACTTGCCAGCAGGTCAAGTGTGAGCACCAGCGGCCCGGGGGTGTATCTCAGAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</genome_strand>
        <mrna_strand>TTTTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATTCGTGCACACCAGTTTGATGACGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATGCATCCGGGAGAGGCGAAAATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTGCCAGTTGGTCAAGTGTGAGCACCAGTGGCCTGGGGGTGTATCTCAAAGGATGCCTATTCTTACTTGGACGTGGGAGTGGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9614" PGL_stop="13955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11701" e_stop="11856"/>
            <exon e_start="12968" e_stop="13955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.918" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11701" e_stop="11856" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.918">
            <gDNA_intron_boundary i_start="11857" i_stop="12967" i_length="1111"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="12968" e_stop="13955" e_length="988"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11701" stop="11856"/>
              <exon start="12968" stop="13287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11701" stop="11856"/>
              <exon start="12968" stop="13287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11702" stop="11856"/>
              <exon start="12968" stop="13541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11725" stop="11856"/>
              <exon start="12968" stop="13250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11741" stop="11856"/>
              <exon start="12968" stop="13291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11837" stop="11856"/>
              <exon start="12968" stop="13291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13176" stop="13955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTCATGAAGGTTAGGGCATCAGTGAAGAAGATGTGCGAGTTCTGTCGCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTAC : GCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTACCTTCTTCTCTTTGAGTTAATTACCGAGGCAAATGTCCCCGTTCCTTGCTTTCTAATATTGACCATGGAGTTGCTGATTCATCCATTGGAGAAGAGAAAAACAGGATGATTCAAATTTCTTTACTTTTTCTATGGAATACTATGTTTTCCTTGATCCGAGGGTCTATCGAAACAACTCTCTGCCTCTGAGAAGGTACAGGTAAGGTCTGCATATACTCCACCTCCCTAGATCCCATTGTGTAGCAGTACACTTGGTACACCGTTGTTTCGTTTATAGAATAGTAAAGGTTTCTTTCAGGATTGGCCCTAGTTGCATGAAGAATGAAAGTGGACTTGCTTTAAAATGGGATATTAAGCGAACTTTTAATAATTATGTCAAACATTATTGGAGTGTTTGTTAGGTGTATTATTGGATATCAATTATTTTGATGACTCCATTGTTTTGTGTCAAACTCAACCCACATTTTGTCACTTTCATTTAAAAGTAGATGGTGGAAGTATCATTATATCATCTTCAATTAGTTTTTCATATTTTCCATGGTGGATATCATCAGTAGTTAAAAGGTGTAAAAAATATATTAGTTCAATGTTGGTTAAATGAATTGAATATGTAAATGATACATGACTTGCGTTTTTCGATTTAGTATAAATAGTTAGTACTCGCATCA</gDNA_template>
            <first_frame> S  H  E  G  *  G  I  S  E  E  D  V  R  V  L  S  H  N  Q  A  A  R  A  G  I  C  A  M  Y  I  *  S  Q  A  Q  T  K  T  R  L  F  N  L  C  L  *  R  P  H  I  N  Y  :  A  C  D  D  E  G  *  A  G  Y  F  S  Y  R  R  Y  S  L  S  R  S  W  *  D  R  G  N  C  D  T  L  V  E  K  G  D  S  F  H  S  L  Q  G  R  T  V  S  K  *  K  F  C  C  K  E  C  Y  T  V  G  T  H  S  E  T  L  L  L  S  *  T  L  V  S  F  L  A  A  V  I  S  L  A  P  S  Y  P  *  T  H  C  H  V  C  Y  G  Y  N  C  N  E  L  *  V  C  *  Y  L  L  L  F  E  L  I  T  E  A  N  V  P  V  P  C  F  L  I  L  T  M  E  L  L  I  H  P  L  E  K  R  K  T  G  *  F  K  F  L  Y  F  F  Y  G  I  L  C  F  P  *  S  E  G  L  S  K  Q  L  S  A  S  E  K  V  Q  V  R  S  A  Y  T  P  P  P  *  I  P  L  C  S  S  T  L  G  T  P  L  F  R  L  *  N  S  K  G  F  F  Q  D  W  P  *  L  H  E  E  *  K  W  T  C  F  K  M  G  Y  *  A  N  F  *  *  L  C  Q  T  L  L  E  C  L  L  G  V  L  L  D  I  N  Y  F  D  D  S  I  V  L  C  Q  T  Q  P  T  F  C  H  F  H  L  K  V  D  G  G  S  I  I  I  S  S  S  I  S  F  S  Y  F  P  W  W  I  S  S  V  V  K  R  C  K  K  Y  I  S  S  M  L  V  K  *  I  E  Y  V  N  D  T  *  L  A  F  F  D  L  V  *  I  V  S  T  R  I  </first_frame>
            <second_frame>  V  M  K  V  R  A  S  V  K  K  M  C  E  F  C  R  T  I  K  R  R  G  R  V  Y  V  L  C  T  S  N  P  K  H  K  Q  R  Q  G  Y  S  T  F  A  S  E  G  L  I  S  T  T :   P  V  M  T  R  V  K  Q  D  T  S  V  T  E  G  I  H  S  L  V  P  G  K  I  E  A  T  V  T  P  W  W  K  R  G  I  A  S  I  L  F  K  D  G  Q  *  A  S  R  S  F  V  A  K  S  V  T  L  *  A  R  T  P  K  H  Y  C  F  L  E  L  W  S  A  F  L  L  L  L  F  L  L  P  L  H  T  L  E  H  I  V  M  C  A  M  V  T  I  A  M  S  Y  K  Y  V  S  T  F  F  S  L  S  *  L  P  R  Q  M  S  P  F  L  A  F  *  Y  *  P  W  S  C  *  F  I  H  W  R  R  E  K  Q  D  D  S  N  F  F  T  F  S  M  E  Y  Y  V  F  L  D  P  R  V  Y  R  N  N  S  L  P  L  R  R  Y  R  *  G  L  H  I  L  H  L  P  R  S  H  C  V  A  V  H  L  V  H  R  C  F  V  Y  R  I  V  K  V  S  F  R  I  G  P  S  C  M  K  N  E  S  G  L  A  L  K  W  D  I  K  R  T  F  N  N  Y  V  K  H  Y  W  S  V  C  *  V  Y  Y  W  I  S  I  I  L  M  T  P  L  F  C  V  K  L  N  P  H  F  V  T  F  I  *  K  *  M  V  E  V  S  L  Y  H  L  Q  L  V  F  H  I  F  H  G  G  Y  H  Q  *  L  K  G  V  K  N  I  L  V  Q  C  W  L  N  E  L  N  M  *  M  I  H  D  L  R  F  S  I  *  Y  K  *  L  V  L  A  S </second_frame>
            <third_frame>   S  *  R  L  G  H  Q  *  R  R  C  A  S  S  V  A  Q  S  S  G  A  G  G  Y  M  C  Y  V  H  L  I  P  S  T  N  K  D  K  A  I  Q  P  L  P  L  K  A  S  Y  Q  L   : R  L  *  *  R  G  L  S  R  I  L  Q  L  P  K  V  F  T  L  S  F  L  V  R  S  R  Q  L  *  H  L  G  G  K  G  G  *  L  P  F  S  S  R  T  D  S  K  Q  V  E  V  L  L  Q  R  V  L  H  C  R  H  A  L  R  N  I  I  A  F  L  N  F  G  Q  L  S  C  C  C  Y  F  S  C  P  F  I  P  L  N  T  L  S  C  V  L  W  L  Q  L  Q  *  A  I  S  M  L  V  P  S  S  L  *  V  N  Y  R  G  K  C  P  R  S  L  L  S  N  I  D  H  G  V  A  D  S  S  I  G  E  E  K  N  R  M  I  Q  I  S  L  L  F  L  W  N  T  M  F  S  L  I  R  G  S  I  E  T  T  L  C  L  *  E  G  T  G  K  V  C  I  Y  S  T  S  L  D  P  I  V  *  Q  Y  T  W  Y  T  V  V  S  F  I  E  *  *  R  F  L  S  G  L  A  L  V  A  *  R  M  K  V  D  L  L  *  N  G  I  L  S  E  L  L  I  I  M  S  N  I  I  G  V  F  V  R  C  I  I  G  Y  Q  L  F  *  *  L  H  C  F  V  S  N  S  T  H  I  L  S  L  S  F  K  S  R  W  W  K  Y  H  Y  I  I  F  N  *  F  F  I  F  S  M  V  D  I  I  S  S  *  K  V  *  K  I  Y  *  F  N  V  G  *  M  N  *  I  C  K  *  Y  M  T  C  V  F  R  F  S  I  N  S  *  Y  S  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0037D07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11702" stop="11856"/>
                    <exon start="12968" stop="13106"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMKVRASVKKMCEFCRTIKRRGRVYVLCTSNPKHKQRQGYSTFASEGLISTTPVMTRVKQDTSVTEGIHSLVPGKIEATVTPWWKRGIASILFKDGQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0037D07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13658" stop="13888"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCQTLLECLLGVLLDINYFDDSIVLCQTQPTFCHFHLKVDGGSIIISSSISFSYFPWWISSVVKRCKKYISSMLVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0037D07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13491" stop="13688"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLHILHLPRSHCVAVHLVHRCFVYRIVKVSFRIGPSCMKNESGLALKWDIKRTFNNYVKHYWSVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9614" e_stop="9691"/>
            <exon e_start="11703" e_stop="11856"/>
            <exon e_start="12968" e_stop="13955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.992" e_score="0.987"/>
          <exon-intron don_prob="0.995" acc_prob="0.918" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="9614" e_stop="9691" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9692" i_stop="11702" i_length="2011"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11703" e_stop="11856" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.918">
            <gDNA_intron_boundary i_start="11857" i_stop="12967" i_length="1111"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="12968" e_stop="13955" e_length="988"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9614" stop="9691"/>
              <exon start="11703" stop="11856"/>
              <exon start="12968" stop="13302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11725" stop="11856"/>
              <exon start="12968" stop="13250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11741" stop="11856"/>
              <exon start="12968" stop="13291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11837" stop="11856"/>
              <exon start="12968" stop="13291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13176" stop="13955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGCTTGTGAACTTTCCCGTCTCTTCAATCCCTCCGGCGAACTCATCGGCGATCTCTGTCTTTATCCGGCGAAGTCAG : TCATGAAGGTTAGGGCATCAGTGAAGAAGATGTGCGAGTTCTGTCGCACAATCAAGCGGCGCGGGCGGGTATATGTGCTATGTACATCTAATCCCAAGCACAAACAAAGACAAGGCTATTCAACCTTTGCCTCTGAAGGCCTCATATCAACTAC : GCCTGTGATGACGAGGGTTAAGCAGGATACTTCAGTTACCGAAGGTATTCACTCTCTCGTTCCTGGTAAGATCGAGGCAACTGTGACACCTTGGTGGAAAAGGGGGATAGCTTCCATTCTCTTCAAGGACGGACAGTAAGCAAGTAGAAGTTTTGTTGCAAAGAGTGTTACACTGTAGGCACGCACTCCGAAACATTATTGCTTTCTTGAACTTTGGTCAGCTTTCTTGCTGCTGTTATTTCTCTTGCCCCTTCATACCCTTGAACACATTGTCATGTGTGCTATGGTTACAATTGCAATGAGCTATAAGTATGTTAGTACCTTCTTCTCTTTGAGTTAATTACCGAGGCAAATGTCCCCGTTCCTTGCTTTCTAATATTGACCATGGAGTTGCTGATTCATCCATTGGAGAAGAGAAAAACAGGATGATTCAAATTTCTTTACTTTTTCTATGGAATACTATGTTTTCCTTGATCCGAGGGTCTATCGAAACAACTCTCTGCCTCTGAGAAGGTACAGGTAAGGTCTGCATATACTCCACCTCCCTAGATCCCATTGTGTAGCAGTACACTTGGTACACCGTTGTTTCGTTTATAGAATAGTAAAGGTTTCTTTCAGGATTGGCCCTAGTTGCATGAAGAATGAAAGTGGACTTGCTTTAAAATGGGATATTAAGCGAACTTTTAATAATTATGTCAAACATTATTGGAGTGTTTGTTAGGTGTATTATTGGATATCAATTATTTTGATGACTCCATTGTTTTGTGTCAAACTCAACCCACATTTTGTCACTTTCATTTAAAAGTAGATGGTGGAAGTATCATTATATCATCTTCAATTAGTTTTTCATATTTTCCATGGTGGATATCATCAGTAGTTAAAAGGTGTAAAAAATATATTAGTTCAATGTTGGTTAAATGAATTGAATATGTAAATGATACATGACTTGCGTTTTTCGATTTAGTATAAATAGTTAGTACTCGCATCA</gDNA_template>
            <first_frame> R  L  V  N  F  P  V  S  S  I  P  P  A  N  S  S  A  I  S  V  F  I  R  R  S  Q  :  S  *  R  L  G  H  Q  *  R  R  C  A  S  S  V  A  Q  S  S  G  A  G  G  Y  M  C  Y  V  H  L  I  P  S  T  N  K  D  K  A  I  Q  P  L  P  L  K  A  S  Y  Q  L   : R  L  *  *  R  G  L  S  R  I  L  Q  L  P  K  V  F  T  L  S  F  L  V  R  S  R  Q  L  *  H  L  G  G  K  G  G  *  L  P  F  S  S  R  T  D  S  K  Q  V  E  V  L  L  Q  R  V  L  H  C  R  H  A  L  R  N  I  I  A  F  L  N  F  G  Q  L  S  C  C  C  Y  F  S  C  P  F  I  P  L  N  T  L  S  C  V  L  W  L  Q  L  Q  *  A  I  S  M  L  V  P  S  S  L  *  V  N  Y  R  G  K  C  P  R  S  L  L  S  N  I  D  H  G  V  A  D  S  S  I  G  E  E  K  N  R  M  I  Q  I  S  L  L  F  L  W  N  T  M  F  S  L  I  R  G  S  I  E  T  T  L  C  L  *  E  G  T  G  K  V  C  I  Y  S  T  S  L  D  P  I  V  *  Q  Y  T  W  Y  T  V  V  S  F  I  E  *  *  R  F  L  S  G  L  A  L  V  A  *  R  M  K  V  D  L  L  *  N  G  I  L  S  E  L  L  I  I  M  S  N  I  I  G  V  F  V  R  C  I  I  G  Y  Q  L  F  *  *  L  H  C  F  V  S  N  S  T  H  I  L  S  L  S  F  K  S  R  W  W  K  Y  H  Y  I  I  F  N  *  F  F  I  F  S  M  V  D  I  I  S  S  *  K  V  *  K  I  Y  *  F  N  V  G  *  M  N  *  I  C  K  *  Y  M  T  C  V  F  R  F  S  I  N  S  *  Y  S  H   </first_frame>
            <second_frame>  G  L  *  T  F  P  S  L  Q  S  L  R  R  T  H  R  R  S  L  S  L  S  G  E  V  S :   H  E  G  *  G  I  S  E  E  D  V  R  V  L  S  H  N  Q  A  A  R  A  G  I  C  A  M  Y  I  *  S  Q  A  Q  T  K  T  R  L  F  N  L  C  L  *  R  P  H  I  N  Y  :  A  C  D  D  E  G  *  A  G  Y  F  S  Y  R  R  Y  S  L  S  R  S  W  *  D  R  G  N  C  D  T  L  V  E  K  G  D  S  F  H  S  L  Q  G  R  T  V  S  K  *  K  F  C  C  K  E  C  Y  T  V  G  T  H  S  E  T  L  L  L  S  *  T  L  V  S  F  L  A  A  V  I  S  L  A  P  S  Y  P  *  T  H  C  H  V  C  Y  G  Y  N  C  N  E  L  *  V  C  *  Y  L  L  L  F  E  L  I  T  E  A  N  V  P  V  P  C  F  L  I  L  T  M  E  L  L  I  H  P  L  E  K  R  K  T  G  *  F  K  F  L  Y  F  F  Y  G  I  L  C  F  P  *  S  E  G  L  S  K  Q  L  S  A  S  E  K  V  Q  V  R  S  A  Y  T  P  P  P  *  I  P  L  C  S  S  T  L  G  T  P  L  F  R  L  *  N  S  K  G  F  F  Q  D  W  P  *  L  H  E  E  *  K  W  T  C  F  K  M  G  Y  *  A  N  F  *  *  L  C  Q  T  L  L  E  C  L  L  G  V  L  L  D  I  N  Y  F  D  D  S  I  V  L  C  Q  T  Q  P  T  F  C  H  F  H  L  K  V  D  G  G  S  I  I  I  S  S  S  I  S  F  S  Y  F  P  W  W  I  S  S  V  V  K  R  C  K  K  Y  I  S  S  M  L  V  K  *  I  E  Y  V  N  D  T  *  L  A  F  F  D  L  V  *  I  V  S  T  R  I  </second_frame>
            <third_frame>   A  C  E  L  S  R  L  F  N  P  S  G  E  L  I  G  D  L  C  L  Y  P  A  K  S   : V  M  K  V  R  A  S  V  K  K  M  C  E  F  C  R  T  I  K  R  R  G  R  V  Y  V  L  C  T  S  N  P  K  H  K  Q  R  Q  G  Y  S  T  F  A  S  E  G  L  I  S  T  T :   P  V  M  T  R  V  K  Q  D  T  S  V  T  E  G  I  H  S  L  V  P  G  K  I  E  A  T  V  T  P  W  W  K  R  G  I  A  S  I  L  F  K  D  G  Q  *  A  S  R  S  F  V  A  K  S  V  T  L  *  A  R  T  P  K  H  Y  C  F  L  E  L  W  S  A  F  L  L  L  L  F  L  L  P  L  H  T  L  E  H  I  V  M  C  A  M  V  T  I  A  M  S  Y  K  Y  V  S  T  F  F  S  L  S  *  L  P  R  Q  M  S  P  F  L  A  F  *  Y  *  P  W  S  C  *  F  I  H  W  R  R  E  K  Q  D  D  S  N  F  F  T  F  S  M  E  Y  Y  V  F  L  D  P  R  V  Y  R  N  N  S  L  P  L  R  R  Y  R  *  G  L  H  I  L  H  L  P  R  S  H  C  V  A  V  H  L  V  H  R  C  F  V  Y  R  I  V  K  V  S  F  R  I  G  P  S  C  M  K  N  E  S  G  L  A  L  K  W  D  I  K  R  T  F  N  N  Y  V  K  H  Y  W  S  V  C  *  V  Y  Y  W  I  S  I  I  L  M  T  P  L  F  C  V  K  L  N  P  H  F  V  T  F  I  *  K  *  M  V  E  V  S  L  Y  H  L  Q  L  V  F  H  I  F  H  G  G  Y  H  Q  *  L  K  G  V  K  N  I  L  V  Q  C  W  L  N  E  L  N  M  *  M  I  H  D  L  R  F  S  I  *  Y  K  *  L  V  L  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0037D07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9616" stop="9691"/>
                    <exon start="11703" stop="11856"/>
                    <exon start="12968" stop="13106"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACELSRLFNPSGELIGDLCLYPAKSVMKVRASVKKMCEFCRTIKRRGRVYVLCTSNPKHKQRQGYSTFASEGLISTTPVMTRVKQDTSVTEGIHSLVPGKIEATVTPWWKRGIASILFKDGQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0037D07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13658" stop="13888"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCQTLLECLLGVLLDINYFDDSIVLCQTQPTFCHFHLKVDGGSIIISSSISFSYFPWWISSVVKRCKKYISSMLVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0037D07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13491" stop="13688"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLHILHLPRSHCVAVHLVHRCFVYRIVKVSFRIGPSCMKNESGLALKWDIKRTFNNYVKHYWSVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18944" PGL_stop="28374"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18952" e_stop="18968"/>
            <exon e_start="19060" e_stop="19210"/>
            <exon e_start="26910" e_stop="27166"/>
            <exon e_start="27359" e_stop="27446"/>
            <exon e_start="28032" e_stop="28098"/>
            <exon e_start="28203" e_stop="28374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.297" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18952" e_stop="18968" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.297">
            <gDNA_intron_boundary i_start="18969" i_stop="19059" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19060" e_stop="19210" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19211" i_stop="26909" i_length="7699"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26910" e_stop="27166" e_length="257"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27167" i_stop="27358" i_length="192"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27359" e_stop="27446" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.857">
            <gDNA_intron_boundary i_start="27447" i_stop="28031" i_length="585"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28032" e_stop="28098" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28099" i_stop="28202" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28203" e_stop="28374" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18952" stop="18968"/>
              <exon start="19060" stop="19210"/>
              <exon start="26910" stop="27166"/>
              <exon start="27359" stop="27446"/>
              <exon start="28032" stop="28098"/>
              <exon start="28203" stop="28374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28077" stop="28098"/>
              <exon start="28203" stop="28356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGCTCTGAGGTCAG : AAAAAGATTGGATTTTTATGTTTGGGGTTCTGTGATCTGGTTCATTTTGGAGCTTTGAAGAGGAATTGGATAGTGATTCTTGTATGTTTAGATATATGATGCTGTCTAGTTCTTTCAGTGCTTGGATCAGTCATTTTCTAGCTTGCATGGG : AGGTTGTTTTGGTTGCTGTGCAAAATCTCAACCAGTTATTGCTGTGGATGAACCATCTAAAGGACTACGAATACAAGGAAAGTTGGTGAGAAAACAGAGTTTGTCGGATGATTTTTGGAGCACCAGTACATGCGATCTGGAGATTAGTACTGTTCAATCTCATAGAAGTATGTCTTCCATCAGTATCTCAAATCAGAGCCTCAGTCAACAGAGTGGCACTGGCAATGCTAGCAACAATAATGAATTCGTAAATCACG : GCTATCTTCTTTGGAACCAGACCAGGCTTCAGTGGCTAGCAAGTAAAAATCCAGAGAACCAAAGAGTCATTGAAGAACCGATGTTAAC : TTGGAACGTTTCCTATGATAGCTTATTTGGGACTAACAAGCGATTCCCTCAGCCAATTCCTCTCTCG : GACATGGTCGACTTTCTTGCTGATATTTGGGAGCACGAGGGTTTGTACGATTAACCATGCTGATCGATATTGTGTATTGATATCTTCTTCGCTTTATCTGAATTTTTCTGGTTGTTTTAACTTCTGATAAAATTGTGCATAGTTTCCAGTATAGAGGGAGTGATGGAGGATG</gDNA_template>
            <first_frame> F  C  S  E  V  R :   K  R  L  D  F  Y  V  W  G  S  V  I  W  F  I  L  E  L  *  R  G  I  G  *  *  F  L  Y  V  *  I  Y  D  A  V  *  F  F  Q  C  L  D  Q  S  F  S  S  L  H  G  :  R  L  F  W  L  L  C  K  I  S  T  S  Y  C  C  G  *  T  I  *  R  T  T  N  T  R  K  V  G  E  K  T  E  F  V  G  *  F  L  E  H  Q  Y  M  R  S  G  D  *  Y  C  S  I  S  *  K  Y  V  F  H  Q  Y  L  K  S  E  P  Q  S  T  E  W  H  W  Q  C  *  Q  Q  *  *  I  R  K  S  R :   L  S  S  L  E  P  D  Q  A  S  V  A  S  K  *  K  S  R  E  P  K  S  H  *  R  T  D  V  N  :  L  E  R  F  L  *  *  L  I  W  D  *  Q  A  I  P  S  A  N  S  S  L   : G  H  G  R  L  S  C  *  Y  L  G  A  R  G  F  V  R  L  T  M  L  I  D  I  V  Y  *  Y  L  L  R  F  I  *  I  F  L  V  V  L  T  S  D  K  I  V  H  S  F  Q  Y  R  G  S  D  G  G   </first_frame>
            <second_frame>  F  A  L  R  S   : E  K  D  W  I  F  M  F  G  V  L  *  S  G  S  F  W  S  F  E  E  E  L  D  S  D  S  C  M  F  R  Y  M  M  L  S  S  S  F  S  A  W  I  S  H  F  L  A  C  M  G :   G  C  F  G  C  C  A  K  S  Q  P  V  I  A  V  D  E  P  S  K  G  L  R  I  Q  G  K  L  V  R  K  Q  S  L  S  D  D  F  W  S  T  S  T  C  D  L  E  I  S  T  V  Q  S  H  R  S  M  S  S  I  S  I  S  N  Q  S  L  S  Q  Q  S  G  T  G  N  A  S  N  N  N  E  F  V  N  H   : G  Y  L  L  W  N  Q  T  R  L  Q  W  L  A  S  K  N  P  E  N  Q  R  V  I  E  E  P  M  L  T :   W  N  V  S  Y  D  S  L  F  G  T  N  K  R  F  P  Q  P  I  P  L  S  :  D  M  V  D  F  L  A  D  I  W  E  H  E  G  L  Y  D  *  P  C  *  S  I  L  C  I  D  I  F  F  A  L  S  E  F  F  W  L  F  *  L  L  I  K  L  C  I  V  S  S  I  E  G  V  M  E  D  </second_frame>
            <third_frame>   L  L  *  G  Q  :  K  K  I  G  F  L  C  L  G  F  C  D  L  V  H  F  G  A  L  K  R  N  W  I  V  I  L  V  C  L  D  I  *  C  C  L  V  L  S  V  L  G  S  V  I  F  *  L  A  W   : E  V  V  L  V  A  V  Q  N  L  N  Q  L  L  L  W  M  N  H  L  K  D  Y  E  Y  K  E  S  W  *  E  N  R  V  C  R  M  I  F  G  A  P  V  H  A  I  W  R  L  V  L  F  N  L  I  E  V  C  L  P  S  V  S  Q  I  R  A  S  V  N  R  V  A  L  A  M  L  A  T  I  M  N  S  *  I  T  :  A  I  F  F  G  T  R  P  G  F  S  G  *  Q  V  K  I  Q  R  T  K  E  S  L  K  N  R  C  *   : L  G  T  F  P  M  I  A  Y  L  G  L  T  S  D  S  L  S  Q  F  L  S  R :   T  W  S  T  F  L  L  I  F  G  S  T  R  V  C  T  I  N  H  A  D  R  Y  C  V  L  I  S  S  S  L  Y  L  N  F  S  G  C  F  N  F  *  *  N  C  A  *  F  P  V  *  R  E  *  W  R  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0037D07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19095" stop="19210"/>
                    <exon start="26910" stop="27166"/>
                    <exon start="27359" stop="27446"/>
                    <exon start="28032" stop="28098"/>
                    <exon start="28203" stop="28256"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGSFWSFEEELDSDSCMFRYMMLSSSFSAWISHFLACMGGCFGCCAKSQPVIAVDEPSKGLRIQGKLVRKQSLSDDFWSTSTCDLEISTVQSHRSMSSISISNQSLSQQSGTGNASNNNEFVNHGYLLWNQTRLQWLASKNPENQRVIEEPMLTWNVSYDSLFGTNKRFPQPIPLSDMVDFLADIWEHEGLYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26882" e_stop="27166"/>
            <exon e_start="27359" e_stop="27799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="0.989"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="26882" e_stop="27166" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27167" i_stop="27358" i_length="192"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="27359" e_stop="27799" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26882" stop="27166"/>
              <exon start="27359" stop="27799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697853" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATAAACCTGAATTTGAACAGAGCAGAGGTTGTTTTGGTTGCTGTGCAAAATCTCAACCAGTTATTGCTGTGGATGAACCATCTAAAGGACTACGAATACAAGGAAAGTTGGTGAGAAAACAGAGTTTGTCGGATGATTTTTGGAGCACCAGTACATGCGATCTGGAGATTAGTACTGTTCAATCTCATAGAAGTATGTCTTCCATCAGTATCTCAAATCAGAGCCTCAGTCAACAGAGTGGCACTGGCAATGCTAGCAACAATAATGAATTCGTAAATCACG : GCTATCTTCTTTGGAACCAGACCAGGCTTCAGTGGCTAGCAAGTAAAAATCCAGAGAACCAAAGAGTCATTGAAGAACCGATGTTAACGTGAGAACCTTGCTTATGTTTATGTTTGTGATGAAGCGTTTCTACACTACAGTTGCAAATCTCATGGAATCAAATGTTAGGACTTCCCTTTAAGTGTTATTATGCCACTAGAAGACTCAGAAATAAGCTTTCACTTTTTCTTTATTACTGTGCTGTCTGGTCAGCTTGAGTGCACCCGAGACTAATTCACGGGGCACCCGCTATCAGAGGTGGAGCCAAAATTTTCAGTTATGGGTTCTGAACCACAACCTTGTTTGTTTATTGGATTCTACAATGATTATTAGACGTCTTAAATGATTTTTAAAAATACAGATATGTCAAACCCATAACTGGAAGGTACACTCGTGCCTGCT</gDNA_template>
            <first_frame> Q  I  N  L  N  L  N  R  A  E  V  V  L  V  A  V  Q  N  L  N  Q  L  L  L  W  M  N  H  L  K  D  Y  E  Y  K  E  S  W  *  E  N  R  V  C  R  M  I  F  G  A  P  V  H  A  I  W  R  L  V  L  F  N  L  I  E  V  C  L  P  S  V  S  Q  I  R  A  S  V  N  R  V  A  L  A  M  L  A  T  I  M  N  S  *  I  T  :  A  I  F  F  G  T  R  P  G  F  S  G  *  Q  V  K  I  Q  R  T  K  E  S  L  K  N  R  C  *  R  E  N  L  A  Y  V  Y  V  C  D  E  A  F  L  H  Y  S  C  K  S  H  G  I  K  C  *  D  F  P  L  S  V  I  M  P  L  E  D  S  E  I  S  F  H  F  F  F  I  T  V  L  S  G  Q  L  E  C  T  R  D  *  F  T  G  H  P  L  S  E  V  E  P  K  F  S  V  M  G  S  E  P  Q  P  C  L  F  I  G  F  Y  N  D  Y  *  T  S  *  M  I  F  K  N  T  D  M  S  N  P  *  L  E  G  T  L  V  P  A </first_frame>
            <second_frame>  K  *  T  *  I  *  T  E  Q  R  L  F  W  L  L  C  K  I  S  T  S  Y  C  C  G  *  T  I  *  R  T  T  N  T  R  K  V  G  E  K  T  E  F  V  G  *  F  L  E  H  Q  Y  M  R  S  G  D  *  Y  C  S  I  S  *  K  Y  V  F  H  Q  Y  L  K  S  E  P  Q  S  T  E  W  H  W  Q  C  *  Q  Q  *  *  I  R  K  S  R :   L  S  S  L  E  P  D  Q  A  S  V  A  S  K  *  K  S  R  E  P  K  S  H  *  R  T  D  V  N  V  R  T  L  L  M  F  M  F  V  M  K  R  F  Y  T  T  V  A  N  L  M  E  S  N  V  R  T  S  L  *  V  L  L  C  H  *  K  T  Q  K  *  A  F  T  F  S  L  L  L  C  C  L  V  S  L  S  A  P  E  T  N  S  R  G  T  R  Y  Q  R  W  S  Q  N  F  Q  L  W  V  L  N  H  N  L  V  C  L  L  D  S  T  M  I  I  R  R  L  K  *  F  L  K  I  Q  I  C  Q  T  H  N  W  K  V  H  S  C  L   </second_frame>
            <third_frame>   N  K  P  E  F  E  Q  S  R  G  C  F  G  C  C  A  K  S  Q  P  V  I  A  V  D  E  P  S  K  G  L  R  I  Q  G  K  L  V  R  K  Q  S  L  S  D  D  F  W  S  T  S  T  C  D  L  E  I  S  T  V  Q  S  H  R  S  M  S  S  I  S  I  S  N  Q  S  L  S  Q  Q  S  G  T  G  N  A  S  N  N  N  E  F  V  N  H   : G  Y  L  L  W  N  Q  T  R  L  Q  W  L  A  S  K  N  P  E  N  Q  R  V  I  E  E  P  M  L  T  *  E  P  C  L  C  L  C  L  *  *  S  V  S  T  L  Q  L  Q  I  S  W  N  Q  M  L  G  L  P  F  K  C  Y  Y  A  T  R  R  L  R  N  K  L  S  L  F  L  Y  Y  C  A  V  W  S  A  *  V  H  P  R  L  I  H  G  A  P  A  I  R  G  G  A  K  I  F  S  Y  G  F  *  T  T  T  L  F  V  Y  W  I  L  Q  *  L  L  D  V  L  N  D  F  *  K  Y  R  Y  V  K  P  I  T  G  R  Y  T  R  A  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0037D07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26884" stop="27166"/>
                    <exon start="27359" stop="27450"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKPEFEQSRGCFGCCAKSQPVIAVDEPSKGLRIQGKLVRKQSLSDDFWSTSTCDLEISTVQSHRSMSSISISNQSLSQQSGTGNASNNNEFVNHGYLLWNQTRLQWLASKNPENQRVIEEPMLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18944" e_stop="18968"/>
            <exon e_start="19060" e_stop="19210"/>
            <exon e_start="26910" e_stop="27166"/>
            <exon e_start="27359" e_stop="27608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.297" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18944" e_stop="18968" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.297">
            <gDNA_intron_boundary i_start="18969" i_stop="19059" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19060" e_stop="19210" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19211" i_stop="26909" i_length="7699"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26910" e_stop="27166" e_length="257"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27167" i_stop="27358" i_length="192"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="27359" e_stop="27608" e_length="250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18944" stop="18968"/>
              <exon start="19060" stop="19210"/>
              <exon start="26910" stop="27166"/>
              <exon start="27359" stop="27608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATATGGTTTTGCTCTGAGGTCAG : AAAAAGATTGGATTTTTATGTTTGGGGTTCTGTGATCTGGTTCATTTTGGAGCTTTGAAGAGGAATTGGATAGTGATTCTTGTATGTTTAGATATATGATGCTGTCTAGTTCTTTCAGTGCTTGGATCAGTCATTTTCTAGCTTGCATGGG : AGGTTGTTTTGGTTGCTGTGCAAAATCTCAACCAGTTATTGCTGTGGATGAACCATCTAAAGGACTACGAATACAAGGAAAGTTGGTGAGAAAACAGAGTTTGTCGGATGATTTTTGGAGCACCAGTACATGCGATCTGGAGATTAGTACTGTTCAATCTCATAGAAGTATGTCTTCCATCAGTATCTCAAATCAGAGCCTCAGTCAACAGAGTGGCACTGGCAATGCTAGCAACAATAATGAATTCGTAAATCACG : GCTATCTTCTTTGGAACCAGACCAGGCTTCAGTGGCTAGCAAGTAAAAATCCAGAGAACCAAAGAGTCATTGAAGAACCGATGTTAACGTGAGAACCTTGCTTATGTTTATGTTTGTGATGAAGCGTTTCTACACTACAGTTGCAAATCTCATGGAATCAAATGTTAGGACTTCCCTTTAAGTGTTATTATGCCACTAGAAGACTCAGAAATAAGCTTTCACTTTTTCTTTATTACTGTGCTGTCTGGTC</gDNA_template>
            <first_frame> L  Y  G  F  A  L  R  S   : E  K  D  W  I  F  M  F  G  V  L  *  S  G  S  F  W  S  F  E  E  E  L  D  S  D  S  C  M  F  R  Y  M  M  L  S  S  S  F  S  A  W  I  S  H  F  L  A  C  M  G :   G  C  F  G  C  C  A  K  S  Q  P  V  I  A  V  D  E  P  S  K  G  L  R  I  Q  G  K  L  V  R  K  Q  S  L  S  D  D  F  W  S  T  S  T  C  D  L  E  I  S  T  V  Q  S  H  R  S  M  S  S  I  S  I  S  N  Q  S  L  S  Q  Q  S  G  T  G  N  A  S  N  N  N  E  F  V  N  H   : G  Y  L  L  W  N  Q  T  R  L  Q  W  L  A  S  K  N  P  E  N  Q  R  V  I  E  E  P  M  L  T  *  E  P  C  L  C  L  C  L  *  *  S  V  S  T  L  Q  L  Q  I  S  W  N  Q  M  L  G  L  P  F  K  C  Y  Y  A  T  R  R  L  R  N  K  L  S  L  F  L  Y  Y  C  A  V  W   </first_frame>
            <second_frame>  Y  M  V  L  L  *  G  Q  :  K  K  I  G  F  L  C  L  G  F  C  D  L  V  H  F  G  A  L  K  R  N  W  I  V  I  L  V  C  L  D  I  *  C  C  L  V  L  S  V  L  G  S  V  I  F  *  L  A  W   : E  V  V  L  V  A  V  Q  N  L  N  Q  L  L  L  W  M  N  H  L  K  D  Y  E  Y  K  E  S  W  *  E  N  R  V  C  R  M  I  F  G  A  P  V  H  A  I  W  R  L  V  L  F  N  L  I  E  V  C  L  P  S  V  S  Q  I  R  A  S  V  N  R  V  A  L  A  M  L  A  T  I  M  N  S  *  I  T  :  A  I  F  F  G  T  R  P  G  F  S  G  *  Q  V  K  I  Q  R  T  K  E  S  L  K  N  R  C  *  R  E  N  L  A  Y  V  Y  V  C  D  E  A  F  L  H  Y  S  C  K  S  H  G  I  K  C  *  D  F  P  L  S  V  I  M  P  L  E  D  S  E  I  S  F  H  F  F  F  I  T  V  L  S  G  </second_frame>
            <third_frame>   I  W  F  C  S  E  V  R :   K  R  L  D  F  Y  V  W  G  S  V  I  W  F  I  L  E  L  *  R  G  I  G  *  *  F  L  Y  V  *  I  Y  D  A  V  *  F  F  Q  C  L  D  Q  S  F  S  S  L  H  G  :  R  L  F  W  L  L  C  K  I  S  T  S  Y  C  C  G  *  T  I  *  R  T  T  N  T  R  K  V  G  E  K  T  E  F  V  G  *  F  L  E  H  Q  Y  M  R  S  G  D  *  Y  C  S  I  S  *  K  Y  V  F  H  Q  Y  L  K  S  E  P  Q  S  T  E  W  H  W  Q  C  *  Q  Q  *  *  I  R  K  S  R :   L  S  S  L  E  P  D  Q  A  S  V  A  S  K  *  K  S  R  E  P  K  S  H  *  R  T  D  V  N  V  R  T  L  L  M  F  M  F  V  M  K  R  F  Y  T  T  V  A  N  L  M  E  S  N  V  R  T  S  L  *  V  L  L  C  H  *  K  T  Q  K  *  A  F  T  F  S  L  L  L  C  C  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0037D07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19095" stop="19210"/>
                    <exon start="26910" stop="27166"/>
                    <exon start="27359" stop="27450"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGSFWSFEEELDSDSCMFRYMMLSSSFSAWISHFLACMGGCFGCCAKSQPVIAVDEPSKGLRIQGKLVRKQSLSDDFWSTSTCDLEISTVQSHRSMSSISISNQSLSQQSGTGNASNNNEFVNHGYLLWNQTRLQWLASKNPENQRVIEEPMLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="40545" PGL_stop="39839"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40545" e_stop="39839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="40545" e_stop="39839" e_length="707"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40545" stop="40029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40267" stop="39839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGGTACCTCTACCCCCACTCTGCTGAGCCGCAACACCACTACTAGAAACTCTATCACCTCTACCTGACTGAACTCTGCCACGACCTCTACCCTGTGGTGCTGGTGGTCTAGTCTGGAATGAAGAATTTGGTCGAGGCCCACCACGACCCCTTTGAGAAGTACACTGCCGCATTAGATGATCGGGATCTCCACAAGTAAAACAAAATCTCTGACCTGGGAACTGTTGTGTGGACCCTGAAAACCCACTATAATTTCCTCGCCCTGTAGGTCGCTGTTGTGAACCGTACGAGCCCTGACCTGGGCCATAAGAACCCCTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTACTGAAAAGAACCATTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAACTGGCCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTTGCGGCGCTCACAATGGACTGGAAAGAAGCCCCCTCCCTAGATGCCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTCAAACCTCAAGC</gDNA_template>
            <first_frame> G  G  T  S  T  P  T  L  L  S  R  N  T  T  T  R  N  S  I  T  S  T  *  L  N  S  A  T  T  S  T  L  W  C  W  W  S  S  L  E  *  R  I  W  S  R  P  T  T  T  P  L  R  S  T  L  P  H  *  M  I  G  I  S  T  S  K  T  K  S  L  T  W  E  L  L  C  G  P  *  K  P  T  I  I  S  S  P  C  R  S  L  L  *  T  V  R  A  L  T  W  A  I  R  T  P  R  C  L  A  T  L  K  C  R  H  R  C  M  N  R  S  P  L  L  K  R  T  I  H  S  L  *  S  P  T  S  R  *  G  T  L  K  L  A  *  Y  T  S  S  F  R  V  P  K  L  L  S  L  H  Q  F  C  L  F  C  G  A  H  N  G  L  E  R  S  P  L  P  R  C  P  K  H  S  *  P  D  R  E  S  Q  S  P  H  K  S  A  D  P  L  C  L  I  W  N  N  G  Q  R  M  P  R  Q  L  A  K  T  R  L  I  L  C  N  R  *  T  I  L  S  Q  T  L  K  P  Q   </first_frame>
            <second_frame>  V  V  P  L  P  P  L  C  *  A  A  T  P  L  L  E  T  L  S  P  L  P  D  *  T  L  P  R  P  L  P  C  G  A  G  G  L  V  W  N  E  E  F  G  R  G  P  P  R  P  L  *  E  V  H  C  R  I  R  *  S  G  S  P  Q  V  K  Q  N  L  *  P  G  N  C  C  V  D  P  E  N  P  L  *  F  P  R  P  V  G  R  C  C  E  P  Y  E  P  *  P  G  P  *  E  P  L  D  V  W  P  P  S  N  V  G  I  D  A  *  I  G  P  R  Y  *  K  E  P  F  T  L  C  D  P  L  P  P  D  E  A  P  *  N  W  P  D  I  R  A  L  L  G  S  P  N  S  S  L  S  I  N  S  A  S  F  A  A  L  T  M  D  W  K  E  A  P  S  L  D  A  R  N  T  A  D  L  I  E  K  V  N  P  L  T  N  L  R  I  L  S  V  S  F  G  I  M  A  N  A  C  L  D  N  W  Q  K  R  A  S  Y  S  V  T  D  K  P  S  C  L  R  L  S  N  L  K  </second_frame>
            <third_frame>   W  Y  L  Y  P  H  S  A  E  P  Q  H  H  Y  *  K  L  Y  H  L  Y  L  T  E  L  C  H  D  L  Y  P  V  V  L  V  V  *  S  G  M  K  N  L  V  E  A  H  H  D  P  F  E  K  Y  T  A  A  L  D  D  R  D  L  H  K  *  N  K  I  S  D  L  G  T  V  V  W  T  L  K  T  H  Y  N  F  L  A  L  *  V  A  V  V  N  R  T  S  P  D  L  G  H  K  N  P  *  M  S  G  H  P  Q  M  S  A  *  M  H  E  *  V  P  A  T  E  K  N  H  S  L  S  V  I  P  Y  L  Q  M  R  H  P  E  T  G  L  I  Y  E  L  F  *  G  P  Q  T  P  L  S  P  S  I  L  P  L  L  R  R  S  Q  W  T  G  K  K  P  P  P  *  M  P  E  T  Q  L  T  *  *  R  K  S  I  P  S  Q  I  C  G  S  S  L  S  H  L  E  *  W  P  T  H  A  *  T  T  G  K  N  A  P  H  T  L  *  P  I  N  H  P  V  S  D  S  Q  T  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0037D07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40118" stop="39840"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWPDIRALLGSPNSSLSINSASFAALTMDWKEAPSLDARNTADLIEKVNPLTNLRILSVSFGIMANACLDNWQKRASYSVTDKPSCLRLSNLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="42398" PGL_stop="42985"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42398" e_stop="42985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="42398" e_stop="42985" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42398" stop="42985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGTATCATCCAGGAAAGGCCAATGATGTGGCCGATGCTCTGAGTAAGAAGACTCCTAGCATGGGGAGTCTTGCAGCGCTTAGTATTATGGAGAGACCATTGGCTAGAGATGTGCAGATATTAGCTAACAGTCTTGTCCGCTTGCAGATTTCAGAAGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGGTCTTCTTTAGTCGAGCAAATCCGTGCACACCAGTTTGATGATGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAAGGGAAGCTAAGGAGGCTGTCCTTGATTCTGATAGTGTATTGCGGATCGGAGGCAGAATTTGTGGGCCTAGGACAGGCGATTTGATTAGATTGATTCTTGAAGAGGCCCATTGTTCTCGGTATTCTATCCATCCGGGAGCGGCGAAGATGTATCATGATCTGAGTCAACATTATTGGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTTTTTCGAGGTGTTTGACTTGCCAGCAGGTCAAGTGTGAGCACCAGCGGCCCGGGGGTGTATCTCAGAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</gDNA_template>
            <first_frame> F  C  I  I  Q  E  R  P  M  M  W  P  M  L  *  V  R  R  L  L  A  W  G  V  L  Q  R  L  V  L  W  R  D  H  W  L  E  M  C  R  Y  *  L  T  V  L  S  A  C  R  F  Q  K  R  V  M  G  *  L  L  L  L  R  L  G  L  L  *  S  S  K  S  V  H  T  S  L  M  M  K  N  Y  V  S  F  E  T  K  Y  *  E  G  K  L  R  R  L  S  L  I  L  I  V  Y  C  G  S  E  A  E  F  V  G  L  G  Q  A  I  *  L  D  *  F  L  K  R  P  I  V  L  G  I  L  S  I  R  E  R  R  R  C  I  M  I  *  V  N  I  I  G  G  V  G  *  R  E  I  F  Q  T  F  F  R  G  V  *  L  A  S  R  S  S  V  S  T  S  G  P  G  V  Y  L  R  G  C  L  F  L  L  G  S  G  S  G  L  L </first_frame>
            <second_frame>  S  V  S  S  R  K  G  Q  *  C  G  R  C  S  E  *  E  D  S  *  H  G  E  S  C  S  A  *  Y  Y  G  E  T  I  G  *  R  C  A  D  I  S  *  Q  S  C  P  L  A  D  F  R  R  E  *  W  D  D  C  F  Y  *  G  S  V  F  F  S  R  A  N  P  C  T  P  V  *  *  *  K  I  M  S  H  S  R  Q  S  I  E  K  G  S  *  G  G  C  P  *  F  *  *  C  I  A  D  R  R  Q  N  L  W  A  *  D  R  R  F  D  *  I  D  S  *  R  G  P  L  F  S  V  F  Y  P  S  G  S  G  E  D  V  S  *  S  E  S  T  L  L  V  V  W  D  E  E  R  Y  F  R  L  F  F  E  V  F  D  L  P  A  G  Q  V  *  A  P  A  A  R  G  C  I  S  E  D  A  Y  S  Y  L  E  V  G  A  D  Y   </second_frame>
            <third_frame>   L  Y  H  P  G  K  A  N  D  V  A  D  A  L  S  K  K  T  P  S  M  G  S  L  A  A  L  S  I  M  E  R  P  L  A  R  D  V  Q  I  L  A  N  S  L  V  R  L  Q  I  S  E  E  S  D  G  M  I  A  F  I  E  A  R  S  S  L  V  E  Q  I  R  A  H  Q  F  D  D  E  K  L  C  L  I  R  D  K  V  L  R  R  E  A  K  E  A  V  L  D  S  D  S  V  L  R  I  G  G  R  I  C  G  P  R  T  G  D  L  I  R  L  I  L  E  E  A  H  C  S  R  Y  S  I  H  P  G  A  A  K  M  Y  H  D  L  S  Q  H  Y  W  W  C  G  M  K  R  D  I  S  D  F  F  S  R  C  L  T  C  Q  Q  V  K  C  E  H  Q  R  P  G  G  V  S  Q  R  M  P  I  P  T  W  K  W  E  R  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0037D07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42400" stop="42984"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHPGKANDVADALSKKTPSMGSLAALSIMERPLARDVQILANSLVRLQISEESDGMIAFIEARSSLVEQIRAHQFDDEKLCLIRDKVLRREAKEAVLDSDSVLRIGGRICGPRTGDLIRLILEEAHCSRYSIHPGAAKMYHDLSQHYWWCGMKRDISDFFSRCLTCQQVKCEHQRPGGVSQRMPIPTWKWERIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 72 chains have been computed
$ 
$ memory statistics:
$ 31704 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 2113 bytes was the average size of a spliced alignment
$ 9704 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2426 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 80 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 15:25:44
-->
