<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:45:07"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7356" ref_strand="+" ref_description="SGN-M7356 C2_At2g30520 [cosii_markers]">
      <seq>gacagacaaacttttctctatgtatcttatataataagacccctactctttattatatccacataaaagttttccgctctatgcactaaaaccaatctcacatggctactcctctcaaaaataccaatagactctctcttgcaatggaaagaactggccaatgggtattttcacaagaaattccaactgatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttgtctgatattcctggagggccagagatgtttgagaaggcagccaagttctgctatggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagcagaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgttgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatcgccggtgctaaggcgtgtgtggaggcgaattttcctagcagatcaccaccaaattggtggacggaagagttaactatcttagatgtagcttttttcgagagaattattgttgcaatgaaaactcgtggggcaaaagcgttaaccatagcaagtgccataatcacatatacagagagatctcttcgtgatcttgtacgtgaccactcaggaaacaacacgagattaatggtaccagaggattcggatatgagaatgcatcaacgggaacttctagagtcgattgtgactctgttgcccgcggagagagcagcttttccaatcaatttcttgtgttgtctcctgcgtacagctattttcttaagagcagccagtagctgcaagaatgaattggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30320" stop="28437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30020" g_stop="29858" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="233" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29188" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="611" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29120" g_stop="28737" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="995" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-M7356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>995</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30020" e_stop="29858"/>
          <exon e_start="29783" e_stop="29714"/>
          <exon e_start="29565" e_stop="29188"/>
          <exon e_start="29120" e_stop="28737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGACAAACTTTTCTCTATGTATCTTATATAATAAGACCCCTACTCTTTATTATATCCACATAAAAGTTTTCCGCTCTATGCACTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATGGTACTACCACTATCTCTTAATTTTTCCTTCATGTATGTTTTGTTTTGTGTTAACAATTATAGTCCATGTTACAGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAGGTAGTTAGTTAGTTACATATATTCTATTCGTATATGGATTAGGTGAATACTAATTATGTCCTTGTAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTTCTTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGGAGAAA</genome_strand>
        <mrna_strand>GACAGACAAACTTTTCTCTATGTATCTTATATAATAAGACCCCTACTCTTTATTATATCCACATAAAAGTTTTCCGCTCTATGCACTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATG..........................................................................GGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAG...................................................................GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTTCTTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7356-2" ref_strand="+" ref_description="SGN-M7356-2 C2_At2g30520-2 [cosii_markers]">
      <seq>ctaaaatctcacatggctactcctctcaagaataccaatagactttctcttgcaatggaaagaactggccaatgggtattttcacaagaaattccaacggatgttattgttgaagtaggtgaagcaaactttaatcttcacaagttcatgctagtagcaaagagcaattacataaggaaacttatacttgatactaaagaaagtgatgtaagtcgtataaacttatcggatattcctggagggccagagatgtttgagaaggcagctaagttctgctacggagttaactttgaaatcacagtacataacgttgctgctcttcgttgtgctgctgaatatcttcaaatgactgataaatactgtgacaacaatctcgcaagccgaacagaggattttctagctcaagttgccttgactagcctttctggtgcacttgtcgtgttaaagtcatgtgaaaatcttcttcctcttgcacatgatctcaatatcattcaaagatgtgttgacatcgccggtgctaaggcgtgtgtggaagcgaattttcctagcagatcaccaccaaattggtggacggaagagttaactatcttagatgtagcttttttcgagagaattattgttgcaatgaaagctcgtggggcaaaagcgttaacaatagcaagtgctataatcacatatacagagagatctcttcgtgatcttgtacgtgaccactcangaaacaacacgagattaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0049C13-NfiJe/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0049C13.2" temp_strand="-" temp_description="C07HBa0049C13.2  AC212618.2 htgs_phase:2 submitted_to_sgn_as:gi|164698548|gb|AC212618.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0049C13, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30227" stop="28604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29931" g_stop="29858" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29783" g_stop="29714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="144" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29188" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="522" r_length="378" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29120" g_stop="28903" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="740" r_length="218" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0049C13.2" gen_strand="-" ref_id="SGN-M7356-2" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0049C13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7356-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29931" e_stop="29858"/>
          <exon e_start="29783" e_stop="29714"/>
          <exon e_start="29565" e_stop="29188"/>
          <exon e_start="29120" e_stop="28903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATGGTACTACCACTATCTCTTAATTTTTCCTTCATGTATGTTTTGTTTTGTGTTAACAATTATAGTCCATGTTACAGGGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAGGTATGTACACATTCAAGATCTATGATTTTTAGATGCAATTAATACTGAATCTAATGACAATTAACTAATGTTGTTGGCCAGCTAGTACTACTGCACCAAAAATGATTCTAATGACAATTAACTAATGGTGATGTTTCTGTTATGTCAGTTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAGGTAGTTAGTTAGTTACATATATTCTATTCGTATATGGATTAGGTGAATACTAATTATGTCCTTGTAGGCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGT</genome_strand>
        <mrna_strand>CTAAAATCTCACATGGCTACTCCTCTCAAGAATACCAATAGACTTTCTCTTGCAATGGAAAGAACTGGCCAATG..........................................................................GGTATTTTCACAAGAAATTCCAACGGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG....................................................................................................................................................TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTATCGGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCTAAGTTCTGCTACGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCCGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTCGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAG...................................................................GCGTGTGTGGAAGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAGCTCGTGGGGCAAAAGCGTTAACAATAGCAAGTGCTATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCANGAAACAACACGAGATTAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="30020" PGL_stop="28737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30020" e_stop="29858"/>
            <exon e_start="29783" e_stop="29714"/>
            <exon e_start="29565" e_stop="29188"/>
            <exon e_start="29120" e_stop="28737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30020" e_stop="29858" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29857" i_stop="29784" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29783" e_stop="29714" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.798">
            <gDNA_intron_boundary i_start="29713" i_stop="29566" i_length="148"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29565" e_stop="29188" e_length="378"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29187" i_stop="29121" i_length="67"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29120" e_stop="28737" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30020" stop="29858"/>
              <exon start="29783" stop="29714"/>
              <exon start="29565" stop="29188"/>
              <exon start="29120" stop="28737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29931" stop="29858"/>
              <exon start="29783" stop="29714"/>
              <exon start="29565" stop="29188"/>
              <exon start="29120" stop="28903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7356-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAGACAAACTTTTCTCTATGTATCTTATATAATAAGACCCCTACTCTTTATTATATCCACATAAAAGTTTTCCGCTCTATGCACTAAAACCAATCTCACATGGCTACTCCTCTCAAAAATACCAATAGACTCTCTCTTGCAATGGAAAGAACTGGCCAATG : GGTATTTTCACAAGAAATTCCAACTGATGTTATTGTTGAAGTAGGTGAAGCAAACTTTAATCTTCACAAG : TTCATGCTAGTAGCAAAGAGCAATTACATAAGGAAACTTATACTTGATACTAAAGAAAGTGATGTAAGTCGTATAAACTTGTCTGATATTCCTGGAGGGCCAGAGATGTTTGAGAAGGCAGCCAAGTTCTGCTATGGAGTTAACTTTGAAATCACAGTACATAACGTTGCTGCTCTTCGTTGTGCTGCTGAATATCTTCAAATGACTGATAAATACTGTGACAACAATCTCGCAAGCAGAACAGAGGATTTTCTAGCTCAAGTTGCCTTGACTAGCCTTTCTGGTGCACTTGTTGTGTTAAAGTCATGTGAAAATCTTCTTCCTCTTGCACATGATCTCAATATCATTCAAAGATGTGTTGACATCGCCGGTGCTAAG : GCGTGTGTGGAGGCGAATTTTCCTAGCAGATCACCACCAAATTGGTGGACGGAAGAGTTAACTATCTTAGATGTAGCTTTTTTCGAGAGAATTATTGTTGCAATGAAAACTCGTGGGGCAAAAGCGTTAACCATAGCAAGTGCCATAATCACATATACAGAGAGATCTCTTCGTGATCTTGTACGTGACCACTCAGGAAACAACACGAGATTAATGGTACCAGAGGATTCGGATATGAGAATGCATCAACGGGAACTTCTAGAGTCGATTGTGACTCTGTTGCCCGCGGAGAGAGCAGCTTTTCCAATCAATTTCTTGTGTTGTCTCCTGCGTACAGCTATTTTCTTAAGAGCAGCCAGTAGCTGCAAGAATGAATTGGAGAAA</gDNA_template>
            <first_frame> D  R  Q  T  F  L  Y  V  S  Y  I  I  R  P  L  L  F  I  I  S  T  *  K  F  S  A  L  C  T  K  T  N  L  T  W  L  L  L  S  K  I  P  I  D  S  L  L  Q  W  K  E  L  A  N   : G  Y  F  H  K  K  F  Q  L  M  L  L  L  K  *  V  K  Q  T  L  I  F  T  S :   S  C  *  *  Q  R  A  I  T  *  G  N  L  Y  L  I  L  K  K  V  M  *  V  V  *  T  C  L  I  F  L  E  G  Q  R  C  L  R  R  Q  P  S  S  A  M  E  L  T  L  K  S  Q  Y  I  T  L  L  L  F  V  V  L  L  N  I  F  K  *  L  I  N  T  V  T  T  I  S  Q  A  E  Q  R  I  F  *  L  K  L  P  *  L  A  F  L  V  H  L  L  C  *  S  H  V  K  I  F  F  L  L  H  M  I  S  I  S  F  K  D  V  L  T  S  P  V  L  R :   R  V  W  R  R  I  F  L  A  D  H  H  Q  I  G  G  R  K  S  *  L  S  *  M  *  L  F  S  R  E  L  L  L  Q  *  K  L  V  G  Q  K  R  *  P  *  Q  V  P  *  S  H  I  Q  R  D  L  F  V  I  L  Y  V  T  T  Q  E  T  T  R  D  *  W  Y  Q  R  I  R  I  *  E  C  I  N  G  N  F  *  S  R  L  *  L  C  C  P  R  R  E  Q  L  F  Q  S  I  S  C  V  V  S  C  V  Q  L  F  S  *  E  Q  P  V  A  A  R  M  N  W  R   </first_frame>
            <second_frame>  T  D  K  L  F  S  M  Y  L  I  *  *  D  P  Y  S  L  L  Y  P  H  K  S  F  P  L  Y  A  L  K  P  I  S  H  G  Y  S  S  Q  K  Y  Q  *  T  L  S  C  N  G  K  N  W  P  M  :  G  I  F  T  R  N  S  N  *  C  Y  C  *  S  R  *  S  K  L  *  S  S  Q   : V  H  A  S  S  K  E  Q  L  H  K  E  T  Y  T  *  Y  *  R  K  *  C  K  S  Y  K  L  V  *  Y  S  W  R  A  R  D  V  *  E  G  S  Q  V  L  L  W  S  *  L  *  N  H  S  T  *  R  C  C  S  S  L  C  C  *  I  S  S  N  D  *  *  I  L  *  Q  Q  S  R  K  Q  N  R  G  F  S  S  S  S  C  L  D  *  P  F  W  C  T  C  C  V  K  V  M  *  K  S  S  S  S  C  T  *  S  Q  Y  H  S  K  M  C  *  H  R  R  C  *   : G  V  C  G  G  E  F  S  *  Q  I  T  T  K  L  V  D  G  R  V  N  Y  L  R  C  S  F  F  R  E  N  Y  C  C  N  E  N  S  W  G  K  S  V  N  H  S  K  C  H  N  H  I  Y  R  E  I  S  S  *  S  C  T  *  P  L  R  K  Q  H  E  I  N  G  T  R  G  F  G  Y  E  N  A  S  T  G  T  S  R  V  D  C  D  S  V  A  R  G  E  S  S  F  S  N  Q  F  L  V  L  S  P  A  Y  S  Y  F  L  K  S  S  Q  *  L  Q  E  *  I  G  E  </second_frame>
            <third_frame>   Q  T  N  F  S  L  C  I  L  Y  N  K  T  P  T  L  Y  Y  I  H  I  K  V  F  R  S  M  H  *  N  Q  S  H  M  A  T  P  L  K  N  T  N  R  L  S  L  A  M  E  R  T  G  Q  W :   V  F  S  Q  E  I  P  T  D  V  I  V  E  V  G  E  A  N  F  N  L  H  K  :  F  M  L  V  A  K  S  N  Y  I  R  K  L  I  L  D  T  K  E  S  D  V  S  R  I  N  L  S  D  I  P  G  G  P  E  M  F  E  K  A  A  K  F  C  Y  G  V  N  F  E  I  T  V  H  N  V  A  A  L  R  C  A  A  E  Y  L  Q  M  T  D  K  Y  C  D  N  N  L  A  S  R  T  E  D  F  L  A  Q  V  A  L  T  S  L  S  G  A  L  V  V  L  K  S  C  E  N  L  L  P  L  A  H  D  L  N  I  I  Q  R  C  V  D  I  A  G  A  K  :  A  C  V  E  A  N  F  P  S  R  S  P  P  N  W  W  T  E  E  L  T  I  L  D  V  A  F  F  E  R  I  I  V  A  M  K  T  R  G  A  K  A  L  T  I  A  S  A  I  I  T  Y  T  E  R  S  L  R  D  L  V  R  D  H  S  G  N  N  T  R  L  M  V  P  E  D  S  D  M  R  M  H  Q  R  E  L  L  E  S  I  V  T  L  L  P  A  E  R  A  A  F  P  I  N  F  L  C  C  L  L  R  T  A  I  F  L  R  A  A  S  S  C  K  N  E  L  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0049C13.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29931" stop="29858"/>
                    <exon start="29783" stop="29714"/>
                    <exon start="29565" stop="29188"/>
                    <exon start="29120" stop="28737"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQSHMATPLKNTNRLSLAMERTGQWVFSQEIPTDVIVEVGEANFNLHKFMLVAKSNYIRKLILDTKESDVSRINLSDIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEYLQMTDKYCDNNLASRTEDFLAQVALTSLSGALVVLKSCENLLPLAHDLNIIQRCVDIAGAKACVEANFPSRSPPNWWTEELTILDVAFFERIIVAMKTRGAKALTIASAIITYTERSLRDLVRDHSGNNTRLMVPEDSDMRMHQRELLESIVTLLPAERAAFPINFLCCLLRTAIFLRAASSCKNELEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 25 chains have been computed
$ 
$ memory statistics:
$ 4560 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5624 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5624 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 27 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:45:13
-->
